AMJ96_CH00387 f291569b36eb2582a1d91c413e5a66d4 417 SUPERFAMILY SSF55973 133 256 8.24E-41 T 12-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMJ96_CH00387 f291569b36eb2582a1d91c413e5a66d4 417 SUPERFAMILY SSF55973 4 129 5.1E-30 T 12-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMJ96_CH00387 f291569b36eb2582a1d91c413e5a66d4 417 SUPERFAMILY SSF55973 257 412 1.37E-63 T 12-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMJ96_CH00387 f291569b36eb2582a1d91c413e5a66d4 417 Gene3D G3DSA:3.30.300.10 12 294 7.1E-149 T 12-10-2018 AMJ96_CH00387 f291569b36eb2582a1d91c413e5a66d4 417 PIRSF PIRSF000497 1 412 3.4E-147 T 12-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMJ96_CH00387 f291569b36eb2582a1d91c413e5a66d4 417 Gene3D G3DSA:3.30.300.10 6 257 7.1E-149 T 12-10-2018 AMJ96_CH00387 f291569b36eb2582a1d91c413e5a66d4 417 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 283 291 - T 12-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMJ96_CH00387 f291569b36eb2582a1d91c413e5a66d4 417 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 4 121 6.1E-32 T 12-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMJ96_CH00387 f291569b36eb2582a1d91c413e5a66d4 417 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 257 400 3.7E-64 T 12-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMJ96_CH00387 f291569b36eb2582a1d91c413e5a66d4 417 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 6 410 1.7E-133 T 12-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMJ96_CH00387 f291569b36eb2582a1d91c413e5a66d4 417 Pfam PF02772 S-adenosylmethionine synthetase, central domain 137 255 3.7E-36 T 12-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMJ96_CH00387 f291569b36eb2582a1d91c413e5a66d4 417 Gene3D G3DSA:3.30.300.10 122 402 7.1E-149 T 12-10-2018 AMJ96_CH00387 f291569b36eb2582a1d91c413e5a66d4 417 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 138 148 - T 12-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AMJ96_PA00200 2163f5abeba42fd97388e89f1c6663ce 297 SUPERFAMILY SSF51735 85 266 4.39E-51 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PA00200 2163f5abeba42fd97388e89f1c6663ce 297 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 13 296 1.3E-25 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AMJ96_PA00200 2163f5abeba42fd97388e89f1c6663ce 297 Gene3D G3DSA:3.40.50.720 3 292 6.8E-115 T 12-10-2018 AMJ96_PA00200 2163f5abeba42fd97388e89f1c6663ce 297 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 93 265 3.2E-48 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMJ96_PA00200 2163f5abeba42fd97388e89f1c6663ce 297 SUPERFAMILY SSF52283 5 117 2.84E-29 T 12-10-2018 AMJ96_PA00200 2163f5abeba42fd97388e89f1c6663ce 297 Gene3D G3DSA:3.40.50.720 85 268 6.8E-115 T 12-10-2018 AMJ96_CH00232 dd50b56460ab258e483f56dcd49d2aa6 349 SUPERFAMILY SSF51445 29 322 2.24E-76 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH00232 dd50b56460ab258e483f56dcd49d2aa6 349 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 150 159 - T 12-10-2018 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 AMJ96_CH00232 dd50b56460ab258e483f56dcd49d2aa6 349 Gene3D G3DSA:3.20.20.80 28 338 2.5E-89 T 12-10-2018 AMJ96_CH00232 dd50b56460ab258e483f56dcd49d2aa6 349 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 32 304 2.3E-50 T 12-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 AMJ96_CH00290 4df21162e996acd7fa4bea88e8f2aaf5 196 Pfam PF02525 Flavodoxin-like fold 1 191 3.6E-37 T 12-10-2018 IPR003680 Flavodoxin-like fold AMJ96_CH00290 4df21162e996acd7fa4bea88e8f2aaf5 196 SUPERFAMILY SSF52218 1 196 2.44E-51 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_CH00290 4df21162e996acd7fa4bea88e8f2aaf5 196 Gene3D G3DSA:3.40.50.360 1 196 3.5E-49 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_PD00581 dcfcccc41abec70ec02af0b1534d17f0 92 SUPERFAMILY SSF143100 1 75 4.58E-14 T 12-10-2018 IPR035069 TTHA1013/TTHA0281-like AMJ96_PD00581 dcfcccc41abec70ec02af0b1534d17f0 92 Pfam PF05534 HicB family 54 83 4.2E-10 T 12-10-2018 IPR008651 Uncharacterised protein family HicB AMJ96_CH03508 c94cde8b6e6cf9cd0ccd165ca38d3351 137 Pfam PF07883 Cupin domain 44 113 1.3E-16 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_CH03508 c94cde8b6e6cf9cd0ccd165ca38d3351 137 Gene3D G3DSA:2.60.120.10 23 126 7.3E-21 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH03508 c94cde8b6e6cf9cd0ccd165ca38d3351 137 PIRSF PIRSF037087 1 136 8.2E-70 T 12-10-2018 IPR017102 Uncharacterised conserved protein UCP037087 AMJ96_CH03508 c94cde8b6e6cf9cd0ccd165ca38d3351 137 SUPERFAMILY SSF51182 21 130 2.77E-24 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_PC00366 4d91ce6653c9e86c872c92dc7fc269f2 490 Gene3D G3DSA:1.20.1740.10 23 480 4.0E-57 T 12-10-2018 AMJ96_PC00366 4d91ce6653c9e86c872c92dc7fc269f2 490 ProSitePatterns PS00218 Amino acid permeases signature. 56 86 - T 12-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AMJ96_PC00366 4d91ce6653c9e86c872c92dc7fc269f2 490 PIRSF PIRSF006060 7 484 2.4E-61 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMJ96_PC00366 4d91ce6653c9e86c872c92dc7fc269f2 490 Pfam PF00324 Amino acid permease 32 466 1.5E-95 T 12-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 AMJ96_CH03011 47d14f6a09a0e19bc7f62168b372c865 308 Gene3D G3DSA:3.30.470.20 87 299 1.6E-67 T 12-10-2018 AMJ96_CH03011 47d14f6a09a0e19bc7f62168b372c865 308 SUPERFAMILY SSF52440 3 97 3.84E-32 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMJ96_CH03011 47d14f6a09a0e19bc7f62168b372c865 308 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 243 275 - T 12-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH03011 47d14f6a09a0e19bc7f62168b372c865 308 Gene3D G3DSA:3.40.50.20 1 85 2.5E-29 T 12-10-2018 AMJ96_CH03011 47d14f6a09a0e19bc7f62168b372c865 308 SUPERFAMILY SSF56059 97 304 2.89E-50 T 12-10-2018 AMJ96_CH03011 47d14f6a09a0e19bc7f62168b372c865 308 PIRSF PIRSF039102 1 53 4.2E-10 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH03011 47d14f6a09a0e19bc7f62168b372c865 308 PIRSF PIRSF039102 47 307 9.3E-73 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH03011 47d14f6a09a0e19bc7f62168b372c865 308 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 5 304 4.9E-87 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH03011 47d14f6a09a0e19bc7f62168b372c865 308 Pfam PF01820 D-ala D-ala ligase N-terminus 6 85 6.8E-19 T 12-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH03011 47d14f6a09a0e19bc7f62168b372c865 308 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 4 305 35.102 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH03011 47d14f6a09a0e19bc7f62168b372c865 308 Pfam PF07478 D-ala D-ala ligase C-terminus 128 301 4.7E-43 T 12-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH03011 47d14f6a09a0e19bc7f62168b372c865 308 Gene3D G3DSA:3.30.1490.20 112 177 1.6E-67 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMJ96_CH03011 47d14f6a09a0e19bc7f62168b372c865 308 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 64 75 - T 12-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_PC00264 97646b11eedb9674a92c079a8efc168f 410 Pfam PF01546 Peptidase family M20/M25/M40 141 403 1.8E-16 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 AMJ96_PC00264 97646b11eedb9674a92c079a8efc168f 410 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 140 179 - T 12-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AMJ96_PC00264 97646b11eedb9674a92c079a8efc168f 410 Gene3D G3DSA:3.40.630.10 5 402 2.6E-170 T 12-10-2018 AMJ96_PC00264 97646b11eedb9674a92c079a8efc168f 410 SUPERFAMILY SSF55031 211 321 1.92E-29 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMJ96_PC00264 97646b11eedb9674a92c079a8efc168f 410 Pfam PF07687 Peptidase dimerisation domain 212 307 7.2E-11 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain AMJ96_PC00264 97646b11eedb9674a92c079a8efc168f 410 Gene3D G3DSA:3.30.70.360 211 321 2.6E-170 T 12-10-2018 AMJ96_PC00264 97646b11eedb9674a92c079a8efc168f 410 PIRSF PIRSF037215 1 410 1.9E-173 T 12-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 AMJ96_PC00264 97646b11eedb9674a92c079a8efc168f 410 SUPERFAMILY SSF53187 3 404 5.03E-77 T 12-10-2018 AMJ96_PC00264 97646b11eedb9674a92c079a8efc168f 410 TIGRFAM TIGR01882 peptidase-T: peptidase T 4 410 9.7E-138 T 12-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 AMJ96_CH01493 23de68474ae5db3480d6245401395e93 314 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 1 292 8.3E-96 T 12-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 AMJ96_CH01493 23de68474ae5db3480d6245401395e93 314 PIRSF PIRSF000446 1 313 6.1E-95 T 12-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 AMJ96_CH01493 23de68474ae5db3480d6245401395e93 314 Pfam PF00698 Acyl transferase domain 5 270 2.4E-37 T 12-10-2018 IPR014043 Acyl transferase AMJ96_CH01493 23de68474ae5db3480d6245401395e93 314 Gene3D G3DSA:3.30.70.250 129 201 3.2E-99 T 12-10-2018 AMJ96_CH01493 23de68474ae5db3480d6245401395e93 314 SUPERFAMILY SSF52151 2 312 8.37E-75 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMJ96_CH01493 23de68474ae5db3480d6245401395e93 314 Gene3D G3DSA:3.40.366.10 5 288 3.2E-99 T 12-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 AMJ96_CH01493 23de68474ae5db3480d6245401395e93 314 SUPERFAMILY SSF55048 132 199 2.22E-16 T 12-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding AMJ96_CH01493 23de68474ae5db3480d6245401395e93 314 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 314 8.5E-40 T 12-10-2018 IPR020801 Polyketide synthase, acyl transferase domain AMJ96_CH00920 8bc622ef730f31c41fe848654a75ddd3 326 Pfam PF03481 Putative GTP-binding controlling metal-binding 201 321 1.3E-19 T 12-10-2018 IPR005145 Putative GTP-binding controlling metal-binding domain AMJ96_CH00920 8bc622ef730f31c41fe848654a75ddd3 326 SUPERFAMILY SSF55821 11 207 4.27E-56 T 12-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily AMJ96_CH00920 8bc622ef730f31c41fe848654a75ddd3 326 PIRSF PIRSF004930 1 326 8.6E-98 T 12-10-2018 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 AMJ96_CH00920 8bc622ef730f31c41fe848654a75ddd3 326 Pfam PF01300 Telomere recombination 21 196 2.3E-49 T 12-10-2018 IPR006070 YrdC-like domain GO:0003725 AMJ96_CH00920 8bc622ef730f31c41fe848654a75ddd3 326 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 10 206 1.7E-45 T 12-10-2018 IPR006070 YrdC-like domain GO:0003725 AMJ96_CH00920 8bc622ef730f31c41fe848654a75ddd3 326 Gene3D G3DSA:3.90.870.10 2 210 5.6E-67 T 12-10-2018 AMJ96_CH00920 8bc622ef730f31c41fe848654a75ddd3 326 Gene3D G3DSA:3.40.50.11030 211 326 3.9E-15 T 12-10-2018 IPR038385 Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily AMJ96_CH03527 447461148436a10a7c6b5f9c912bf70b 231 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 231 8.2E-102 T 12-10-2018 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE AMJ96_CH03527 447461148436a10a7c6b5f9c912bf70b 231 SMART SM00382 26 218 2.1E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03527 447461148436a10a7c6b5f9c912bf70b 231 Pfam PF00005 ABC transporter 17 160 1.9E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03527 447461148436a10a7c6b5f9c912bf70b 231 SUPERFAMILY SSF52540 2 220 1.18E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03527 447461148436a10a7c6b5f9c912bf70b 231 Gene3D G3DSA:3.40.50.300 1 230 6.6E-57 T 12-10-2018 AMJ96_PD00147 49feb914be076b68cb510bf0972f31ac 301 PIRSF PIRSF001365 1 300 2.7E-58 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PD00147 49feb914be076b68cb510bf0972f31ac 301 SMART SM01130 5 301 7.8E-63 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PD00147 49feb914be076b68cb510bf0972f31ac 301 SUPERFAMILY SSF51569 5 299 1.78E-67 T 12-10-2018 AMJ96_PD00147 49feb914be076b68cb510bf0972f31ac 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 39 60 8.7E-11 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PD00147 49feb914be076b68cb510bf0972f31ac 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 136 153 8.7E-11 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PD00147 49feb914be076b68cb510bf0972f31ac 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 75 93 8.7E-11 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PD00147 49feb914be076b68cb510bf0972f31ac 301 Pfam PF00701 Dihydrodipicolinate synthetase family 7 294 2.0E-43 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PD00147 49feb914be076b68cb510bf0972f31ac 301 Gene3D G3DSA:3.20.20.70 4 300 3.6E-83 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_PA00029 9d33b915a9b73cb149418b60b5311b19 487 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 247 254 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMJ96_PA00029 9d33b915a9b73cb149418b60b5311b19 487 Gene3D G3DSA:3.40.605.10 8 469 1.1E-163 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_PA00029 9d33b915a9b73cb149418b60b5311b19 487 Pfam PF00171 Aldehyde dehydrogenase family 17 471 2.4E-161 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_PA00029 9d33b915a9b73cb149418b60b5311b19 487 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 275 286 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMJ96_PA00029 9d33b915a9b73cb149418b60b5311b19 487 Gene3D G3DSA:3.40.309.10 252 441 1.1E-163 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_PA00029 9d33b915a9b73cb149418b60b5311b19 487 SUPERFAMILY SSF53720 2 476 3.67E-158 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_CH02466 a27d80617f2fae8278439f422b171937 255 SUPERFAMILY SSF51735 5 252 5.37E-77 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02466 a27d80617f2fae8278439f422b171937 255 Gene3D G3DSA:3.40.50.720 1 253 1.1E-75 T 12-10-2018 AMJ96_CH02466 a27d80617f2fae8278439f422b171937 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 251 2.6E-62 T 12-10-2018 AMJ96_CH02466 a27d80617f2fae8278439f422b171937 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 189 0.0021 T 12-10-2018 AMJ96_CH02466 a27d80617f2fae8278439f422b171937 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 3.2E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02466 a27d80617f2fae8278439f422b171937 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.2E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02466 a27d80617f2fae8278439f422b171937 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 3.2E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02466 a27d80617f2fae8278439f422b171937 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 3.2E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02466 a27d80617f2fae8278439f422b171937 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 3.2E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02466 a27d80617f2fae8278439f422b171937 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 3.2E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02466 a27d80617f2fae8278439f422b171937 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 2.5E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02466 a27d80617f2fae8278439f422b171937 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.5E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01228 c10ea911d1559fa75800f8432549fe11 256 SUPERFAMILY SSF53335 17 255 1.13E-26 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH01228 c10ea911d1559fa75800f8432549fe11 256 Gene3D G3DSA:3.40.50.150 8 253 1.8E-86 T 12-10-2018 AMJ96_CH01228 c10ea911d1559fa75800f8432549fe11 256 Gene3D G3DSA:1.10.150.290 131 236 1.8E-86 T 12-10-2018 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal GO:0030798 AMJ96_CH01228 c10ea911d1559fa75800f8432549fe11 256 Hamap MF_00560 Trans-aconitate 2-methyltransferase [tam]. 1 256 42.736 T 12-10-2018 IPR023506 Trans-aconitate 2-methyltransferase GO:0030798 AMJ96_CH01228 c10ea911d1559fa75800f8432549fe11 256 Pfam PF13649 Methyltransferase domain 35 123 1.9E-10 T 12-10-2018 AMJ96_CH02706 c633db0e959210d01dd556af71d11e22 266 Gene3D G3DSA:3.40.50.150 3 241 1.0E-42 T 12-10-2018 AMJ96_CH02706 c633db0e959210d01dd556af71d11e22 266 Pfam PF08241 Methyltransferase domain 41 135 1.2E-23 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMJ96_CH02706 c633db0e959210d01dd556af71d11e22 266 SUPERFAMILY SSF53335 11 211 4.03E-45 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH00194 1208d1f6c9da5a73771ae4b9daa7b7ba 503 SUPERFAMILY SSF52540 4 229 1.66E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00194 1208d1f6c9da5a73771ae4b9daa7b7ba 503 Pfam PF00005 ABC transporter 275 431 1.9E-18 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00194 1208d1f6c9da5a73771ae4b9daa7b7ba 503 SMART SM00382 284 480 0.32 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00194 1208d1f6c9da5a73771ae4b9daa7b7ba 503 SMART SM00382 31 219 8.7E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00194 1208d1f6c9da5a73771ae4b9daa7b7ba 503 Gene3D G3DSA:3.40.50.300 1 246 6.3E-57 T 12-10-2018 AMJ96_CH00194 1208d1f6c9da5a73771ae4b9daa7b7ba 503 Gene3D G3DSA:3.40.50.300 258 495 6.2E-42 T 12-10-2018 AMJ96_CH00194 1208d1f6c9da5a73771ae4b9daa7b7ba 503 SUPERFAMILY SSF52540 248 489 2.47E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00194 1208d1f6c9da5a73771ae4b9daa7b7ba 503 Pfam PF00005 ABC transporter 23 170 2.0E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00194 1208d1f6c9da5a73771ae4b9daa7b7ba 503 ProSitePatterns PS00211 ABC transporters family signature. 404 418 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00155 427ae4de9aa8d4fc3b377b753fdd62e2 594 Gene3D G3DSA:3.40.50.970 355 577 5.4E-52 T 12-10-2018 AMJ96_PD00155 427ae4de9aa8d4fc3b377b753fdd62e2 594 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 173 2.8E-46 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMJ96_PD00155 427ae4de9aa8d4fc3b377b753fdd62e2 594 Gene3D G3DSA:3.40.50.970 1 179 2.9E-56 T 12-10-2018 AMJ96_PD00155 427ae4de9aa8d4fc3b377b753fdd62e2 594 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 388 543 5.0E-23 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMJ96_PD00155 427ae4de9aa8d4fc3b377b753fdd62e2 594 SUPERFAMILY SSF52518 3 174 3.07E-47 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_PD00155 427ae4de9aa8d4fc3b377b753fdd62e2 594 Gene3D G3DSA:3.40.50.1220 186 342 2.6E-39 T 12-10-2018 AMJ96_PD00155 427ae4de9aa8d4fc3b377b753fdd62e2 594 SUPERFAMILY SSF52518 364 562 2.86E-48 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_PD00155 427ae4de9aa8d4fc3b377b753fdd62e2 594 SUPERFAMILY SSF52467 188 359 3.09E-40 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMJ96_PD00155 427ae4de9aa8d4fc3b377b753fdd62e2 594 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 199 328 1.4E-23 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMJ96_CH01511 d3b01c7194994f5332a5d887e0eeb926 283 Pfam PF01522 Polysaccharide deacetylase 78 190 1.1E-23 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMJ96_CH01511 d3b01c7194994f5332a5d887e0eeb926 283 Gene3D G3DSA:3.20.20.370 64 265 5.8E-51 T 12-10-2018 AMJ96_CH01511 d3b01c7194994f5332a5d887e0eeb926 283 SUPERFAMILY SSF88713 77 262 2.15E-48 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMJ96_CH03892 eba5ffa62344c24d9fa18add8a2fb8df 737 SMART SM00267 292 464 2.8E-44 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH03892 eba5ffa62344c24d9fa18add8a2fb8df 737 SMART SM00052 474 715 4.1E-93 T 12-10-2018 IPR001633 EAL domain AMJ96_CH03892 eba5ffa62344c24d9fa18add8a2fb8df 737 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 302 463 9.1E-33 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH03892 eba5ffa62344c24d9fa18add8a2fb8df 737 Gene3D G3DSA:3.30.70.270 298 476 1.3E-46 T 12-10-2018 AMJ96_CH03892 eba5ffa62344c24d9fa18add8a2fb8df 737 Pfam PF00563 EAL domain 481 710 4.0E-71 T 12-10-2018 IPR001633 EAL domain AMJ96_CH03892 eba5ffa62344c24d9fa18add8a2fb8df 737 Pfam PF00990 Diguanylate cyclase, GGDEF domain 303 459 1.4E-34 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH03892 eba5ffa62344c24d9fa18add8a2fb8df 737 Pfam PF05228 CHASE4 domain 64 224 4.6E-18 T 12-10-2018 IPR007892 CHASE4 AMJ96_CH03892 eba5ffa62344c24d9fa18add8a2fb8df 737 SUPERFAMILY SSF141868 481 723 9.68E-83 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH03892 eba5ffa62344c24d9fa18add8a2fb8df 737 Gene3D G3DSA:3.20.20.450 477 732 8.7E-91 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH03892 eba5ffa62344c24d9fa18add8a2fb8df 737 SUPERFAMILY SSF55073 308 466 7.85E-40 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH04092 8c04dbeb813efea38dae8b6836d54cc0 304 Pfam PF13377 Periplasmic binding protein-like domain 142 297 1.4E-32 T 12-10-2018 AMJ96_CH04092 8c04dbeb813efea38dae8b6836d54cc0 304 SMART SM00354 2 44 5.0E-4 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH04092 8c04dbeb813efea38dae8b6836d54cc0 304 Gene3D G3DSA:3.40.50.2300 132 257 1.1E-60 T 12-10-2018 AMJ96_CH04092 8c04dbeb813efea38dae8b6836d54cc0 304 SUPERFAMILY SSF53822 34 298 1.07E-61 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH04092 8c04dbeb813efea38dae8b6836d54cc0 304 Gene3D G3DSA:3.40.50.2300 34 276 1.1E-60 T 12-10-2018 AMJ96_CH04092 8c04dbeb813efea38dae8b6836d54cc0 304 Gene3D G3DSA:1.10.260.40 1 31 1.1E-6 T 12-10-2018 AMJ96_CH03275 792db53af0d9e500ba9ab78fa81e98d0 497 Hamap MF_00186 Glycerol kinase [glpK]. 2 497 54.503 T 12-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 AMJ96_CH03275 792db53af0d9e500ba9ab78fa81e98d0 497 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 4 494 9.9E-213 T 12-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 AMJ96_CH03275 792db53af0d9e500ba9ab78fa81e98d0 497 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 360 380 - T 12-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AMJ96_CH03275 792db53af0d9e500ba9ab78fa81e98d0 497 Gene3D G3DSA:3.30.420.40 3 251 2.2E-107 T 12-10-2018 AMJ96_CH03275 792db53af0d9e500ba9ab78fa81e98d0 497 PIRSF PIRSF000538 2 496 8.3E-170 T 12-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AMJ96_CH03275 792db53af0d9e500ba9ab78fa81e98d0 497 SUPERFAMILY SSF53067 253 495 2.85E-76 T 12-10-2018 AMJ96_CH03275 792db53af0d9e500ba9ab78fa81e98d0 497 SUPERFAMILY SSF53067 4 253 1.81E-92 T 12-10-2018 AMJ96_CH03275 792db53af0d9e500ba9ab78fa81e98d0 497 Gene3D G3DSA:3.30.420.40 252 496 1.1E-85 T 12-10-2018 AMJ96_CH03275 792db53af0d9e500ba9ab78fa81e98d0 497 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 250 2.7E-77 T 12-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AMJ96_CH03275 792db53af0d9e500ba9ab78fa81e98d0 497 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 260 449 6.6E-54 T 12-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AMJ96_CH03251 916567842b7dba07d108c52752510e18 565 Pfam PF13382 Adenine deaminase C-terminal domain 395 561 8.4E-67 T 12-10-2018 IPR026912 Adenine deaminase C-terminal domain KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 AMJ96_CH03251 916567842b7dba07d108c52752510e18 565 Pfam PF01979 Amidohydrolase family 66 349 3.1E-26 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMJ96_CH03251 916567842b7dba07d108c52752510e18 565 Gene3D G3DSA:3.20.20.140 70 311 2.0E-117 T 12-10-2018 AMJ96_CH03251 916567842b7dba07d108c52752510e18 565 Gene3D G3DSA:2.30.40.10 14 347 2.0E-117 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH03251 916567842b7dba07d108c52752510e18 565 SUPERFAMILY SSF51556 70 316 6.81E-31 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_CH03251 916567842b7dba07d108c52752510e18 565 Hamap MF_01518 Adenine deaminase [ade]. 19 565 37.687 T 12-10-2018 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 AMJ96_CH03251 916567842b7dba07d108c52752510e18 565 TIGRFAM TIGR01178 ade: adenine deaminase 19 564 7.6E-176 T 12-10-2018 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 AMJ96_CH03251 916567842b7dba07d108c52752510e18 565 SUPERFAMILY SSF51338 17 347 5.32E-12 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH00628 3e85769558690e471d8476984f080449 153 SUPERFAMILY SSF51182 5 148 1.87E-25 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH00628 3e85769558690e471d8476984f080449 153 Pfam PF07883 Cupin domain 42 109 3.2E-17 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_CH00628 3e85769558690e471d8476984f080449 153 Gene3D G3DSA:2.60.120.10 2 152 6.3E-34 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PB00071 b8416e68f83ce263342326c5bcb19805 373 SUPERFAMILY SSF55347 123 358 9.81E-61 T 12-10-2018 AMJ96_PB00071 b8416e68f83ce263342326c5bcb19805 373 Gene3D G3DSA:3.40.50.720 4 344 5.6E-74 T 12-10-2018 AMJ96_PB00071 b8416e68f83ce263342326c5bcb19805 373 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 4 100 6.4E-19 T 12-10-2018 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 AMJ96_PB00071 b8416e68f83ce263342326c5bcb19805 373 SUPERFAMILY SSF51735 1 174 6.34E-23 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PB00071 b8416e68f83ce263342326c5bcb19805 373 Gene3D G3DSA:3.30.360.10 123 310 5.6E-74 T 12-10-2018 AMJ96_PB00071 b8416e68f83ce263342326c5bcb19805 373 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 122 346 5.0E-20 T 12-10-2018 IPR032095 Saccharopine dehydrogenase, C-terminal Reactome: R-HSA-71064 AMJ96_CH01478 350f97f55c8d7c4feae736ee12401f43 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.4E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01478 350f97f55c8d7c4feae736ee12401f43 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 5.4E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01478 350f97f55c8d7c4feae736ee12401f43 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 5.4E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01478 350f97f55c8d7c4feae736ee12401f43 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 5.4E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01478 350f97f55c8d7c4feae736ee12401f43 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 5.4E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01478 350f97f55c8d7c4feae736ee12401f43 246 Gene3D G3DSA:3.40.50.720 1 246 4.7E-70 T 12-10-2018 AMJ96_CH01478 350f97f55c8d7c4feae736ee12401f43 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH01478 350f97f55c8d7c4feae736ee12401f43 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.2E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01478 350f97f55c8d7c4feae736ee12401f43 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.2E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01478 350f97f55c8d7c4feae736ee12401f43 246 SUPERFAMILY SSF51735 1 235 5.0E-63 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01478 350f97f55c8d7c4feae736ee12401f43 246 Pfam PF00106 short chain dehydrogenase 9 200 3.2E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01195 1bf6060abfdb86dc2e4573d72745edce 298 SUPERFAMILY SSF53850 95 293 4.16E-35 T 12-10-2018 AMJ96_CH01195 1bf6060abfdb86dc2e4573d72745edce 298 Gene3D G3DSA:3.40.190.10 103 286 3.8E-56 T 12-10-2018 AMJ96_CH01195 1bf6060abfdb86dc2e4573d72745edce 298 Gene3D G3DSA:3.40.190.10 163 259 3.8E-56 T 12-10-2018 AMJ96_CH01195 1bf6060abfdb86dc2e4573d72745edce 298 Gene3D G3DSA:1.10.10.10 7 96 2.5E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01195 1bf6060abfdb86dc2e4573d72745edce 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 1.1E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01195 1bf6060abfdb86dc2e4573d72745edce 298 Pfam PF03466 LysR substrate binding domain 95 290 7.9E-33 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH01195 1bf6060abfdb86dc2e4573d72745edce 298 SUPERFAMILY SSF46785 7 114 1.54E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PA00112 993907d2007bc539b0a5cdb490cc7af1 260 SMART SM01134 75 236 1.2E-56 T 12-10-2018 AMJ96_PA00112 993907d2007bc539b0a5cdb490cc7af1 260 SUPERFAMILY SSF100950 76 236 1.02E-24 T 12-10-2018 IPR037171 NagB/RpiA transferase-like AMJ96_PA00112 993907d2007bc539b0a5cdb490cc7af1 260 SUPERFAMILY SSF46785 6 62 1.08E-9 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PA00112 993907d2007bc539b0a5cdb490cc7af1 260 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 41 59 4.4E-6 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMJ96_PA00112 993907d2007bc539b0a5cdb490cc7af1 260 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 27 41 4.4E-6 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMJ96_PA00112 993907d2007bc539b0a5cdb490cc7af1 260 ProSitePatterns PS00894 DeoR-type HTH domain signature. 9 43 - T 12-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AMJ96_PA00112 993907d2007bc539b0a5cdb490cc7af1 260 Gene3D G3DSA:1.10.10.10 3 56 1.7E-5 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PA00112 993907d2007bc539b0a5cdb490cc7af1 260 Pfam PF08220 DeoR-like helix-turn-helix domain 9 61 5.7E-12 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMJ96_PA00112 993907d2007bc539b0a5cdb490cc7af1 260 Pfam PF00455 DeoR C terminal sensor domain 77 235 2.6E-43 T 12-10-2018 IPR014036 DeoR C-terminal sensor domain AMJ96_PA00112 993907d2007bc539b0a5cdb490cc7af1 260 SMART SM00420 9 61 7.6E-10 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMJ96_CH02477 03f2af1387341511dbefbbd295d0ed67 350 Pfam PF00561 alpha/beta hydrolase fold 78 204 1.6E-20 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH02477 03f2af1387341511dbefbbd295d0ed67 350 PRINTS PR00412 Epoxide hydrolase signature 325 347 9.5E-16 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_CH02477 03f2af1387341511dbefbbd295d0ed67 350 PRINTS PR00412 Epoxide hydrolase signature 166 179 9.5E-16 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_CH02477 03f2af1387341511dbefbbd295d0ed67 350 PRINTS PR00412 Epoxide hydrolase signature 291 307 9.5E-16 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_CH02477 03f2af1387341511dbefbbd295d0ed67 350 PRINTS PR00412 Epoxide hydrolase signature 152 165 9.5E-16 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_CH02477 03f2af1387341511dbefbbd295d0ed67 350 PRINTS PR00412 Epoxide hydrolase signature 104 119 9.5E-16 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_CH02477 03f2af1387341511dbefbbd295d0ed67 350 PRINTS PR00412 Epoxide hydrolase signature 84 102 9.5E-16 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_CH02477 03f2af1387341511dbefbbd295d0ed67 350 SUPERFAMILY SSF53474 58 346 1.01E-59 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02477 03f2af1387341511dbefbbd295d0ed67 350 Gene3D G3DSA:3.40.50.1820 48 350 7.5E-87 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PA00075 711b18f7f2561fd2d3a3a84c85c0de36 295 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 60 257 2.4E-14 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMJ96_PA00075 711b18f7f2561fd2d3a3a84c85c0de36 295 SUPERFAMILY SSF111369 51 260 3.4E-17 T 12-10-2018 AMJ96_PA00075 711b18f7f2561fd2d3a3a84c85c0de36 295 Gene3D G3DSA:2.40.50.100 59 200 3.8E-37 T 12-10-2018 AMJ96_PA00075 711b18f7f2561fd2d3a3a84c85c0de36 295 Gene3D G3DSA:1.10.287.470 98 167 3.8E-37 T 12-10-2018 AMJ96_PA00075 711b18f7f2561fd2d3a3a84c85c0de36 295 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 283 6.1E-40 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMJ96_PA00075 711b18f7f2561fd2d3a3a84c85c0de36 295 Gene3D G3DSA:2.40.420.20 278 288 3.8E-37 T 12-10-2018 AMJ96_PA00075 711b18f7f2561fd2d3a3a84c85c0de36 295 Gene3D G3DSA:2.40.30.170 45 277 3.8E-37 T 12-10-2018 AMJ96_CH03939 855e429636f687e8a56c501f07179834 317 SUPERFAMILY SSF100950 61 316 5.69E-68 T 12-10-2018 IPR037171 NagB/RpiA transferase-like AMJ96_CH03939 855e429636f687e8a56c501f07179834 317 Gene3D G3DSA:3.40.50.1360 57 316 1.2E-66 T 12-10-2018 AMJ96_CH03939 855e429636f687e8a56c501f07179834 317 Gene3D G3DSA:1.10.10.10 2 56 9.4E-11 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03939 855e429636f687e8a56c501f07179834 317 Pfam PF04198 Putative sugar-binding domain 61 316 2.7E-76 T 12-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 AMJ96_CH00814 ad23682e4bc6e7eac3286fee815ea222 239 Pfam PF01728 FtsJ-like methyltransferase 49 227 7.9E-52 T 12-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 AMJ96_CH00814 ad23682e4bc6e7eac3286fee815ea222 239 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 33 228 29.056 T 12-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 AMJ96_CH00814 ad23682e4bc6e7eac3286fee815ea222 239 Gene3D G3DSA:3.40.50.150 46 236 1.4E-57 T 12-10-2018 AMJ96_CH00814 ad23682e4bc6e7eac3286fee815ea222 239 PIRSF PIRSF005461 15 239 7.2E-70 T 12-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 AMJ96_CH00814 ad23682e4bc6e7eac3286fee815ea222 239 SUPERFAMILY SSF53335 22 229 1.71E-36 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_PC00340 942de974fd0efd831ddd8ce0e05b929e 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 45 1.1E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00340 942de974fd0efd831ddd8ce0e05b929e 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 13 24 1.1E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00340 942de974fd0efd831ddd8ce0e05b929e 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 34 1.1E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00340 942de974fd0efd831ddd8ce0e05b929e 292 Gene3D G3DSA:1.10.10.10 1 79 3.4E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00340 942de974fd0efd831ddd8ce0e05b929e 292 Pfam PF03466 LysR substrate binding domain 82 272 1.1E-20 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PC00340 942de974fd0efd831ddd8ce0e05b929e 292 SUPERFAMILY SSF53850 83 288 4.71E-26 T 12-10-2018 AMJ96_PC00340 942de974fd0efd831ddd8ce0e05b929e 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 1 57 4.7E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00340 942de974fd0efd831ddd8ce0e05b929e 292 Gene3D G3DSA:3.40.190.10 94 283 7.9E-37 T 12-10-2018 AMJ96_PC00340 942de974fd0efd831ddd8ce0e05b929e 292 Gene3D G3DSA:3.40.190.10 153 259 7.9E-37 T 12-10-2018 AMJ96_PC00340 942de974fd0efd831ddd8ce0e05b929e 292 TIGRFAM TIGR03418 chol_sulf_TF: putative choline sulfate-utilization transcription factor 1 286 2.0E-99 T 12-10-2018 IPR017786 Transcription factor, choline sulphate-utilisation, putative AMJ96_PC00340 942de974fd0efd831ddd8ce0e05b929e 292 SUPERFAMILY SSF46785 1 104 1.33E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01988 d3efb370fe7de9d0fa9904c2e1469cd4 779 Gene3D G3DSA:3.10.20.310 187 278 1.2E-23 T 12-10-2018 AMJ96_CH01988 d3efb370fe7de9d0fa9904c2e1469cd4 779 Pfam PF01103 Surface antigen 461 779 1.1E-78 T 12-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 AMJ96_CH01988 d3efb370fe7de9d0fa9904c2e1469cd4 779 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 40 779 4.8E-242 T 12-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AMJ96_CH01988 d3efb370fe7de9d0fa9904c2e1469cd4 779 Gene3D G3DSA:3.10.20.310 108 184 4.3E-12 T 12-10-2018 AMJ96_CH01988 d3efb370fe7de9d0fa9904c2e1469cd4 779 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 11 779 23.167 T 12-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AMJ96_CH01988 d3efb370fe7de9d0fa9904c2e1469cd4 779 Gene3D G3DSA:3.10.20.310 279 355 5.3E-13 T 12-10-2018 AMJ96_CH01988 d3efb370fe7de9d0fa9904c2e1469cd4 779 Gene3D G3DSA:3.10.20.310 361 436 3.0E-24 T 12-10-2018 AMJ96_CH01988 d3efb370fe7de9d0fa9904c2e1469cd4 779 Pfam PF07244 Surface antigen variable number repeat 188 275 1.3E-15 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMJ96_CH01988 d3efb370fe7de9d0fa9904c2e1469cd4 779 Pfam PF07244 Surface antigen variable number repeat 292 357 1.0E-7 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMJ96_CH01988 d3efb370fe7de9d0fa9904c2e1469cd4 779 Pfam PF07244 Surface antigen variable number repeat 40 105 2.0E-7 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMJ96_CH01988 d3efb370fe7de9d0fa9904c2e1469cd4 779 Pfam PF07244 Surface antigen variable number repeat 361 430 5.1E-15 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMJ96_CH01988 d3efb370fe7de9d0fa9904c2e1469cd4 779 Pfam PF07244 Surface antigen variable number repeat 109 184 5.3E-12 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMJ96_CH01988 d3efb370fe7de9d0fa9904c2e1469cd4 779 Gene3D G3DSA:2.40.160.50 437 779 6.5E-90 T 12-10-2018 AMJ96_CH01988 d3efb370fe7de9d0fa9904c2e1469cd4 779 PIRSF PIRSF006076 3 779 5.5E-245 T 12-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AMJ96_CH01988 d3efb370fe7de9d0fa9904c2e1469cd4 779 Gene3D G3DSA:3.10.20.310 32 106 6.6E-21 T 12-10-2018 AMJ96_CH00528 518f4d6a598fb0944cf49bb451b456af 271 Gene3D G3DSA:3.40.50.300 26 268 3.5E-65 T 12-10-2018 AMJ96_CH00528 518f4d6a598fb0944cf49bb451b456af 271 SMART SM00382 48 242 3.0E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00528 518f4d6a598fb0944cf49bb451b456af 271 ProSitePatterns PS00211 ABC transporters family signature. 168 182 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00528 518f4d6a598fb0944cf49bb451b456af 271 SUPERFAMILY SSF52540 27 258 2.37E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00528 518f4d6a598fb0944cf49bb451b456af 271 Pfam PF00005 ABC transporter 41 195 1.6E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00528 518f4d6a598fb0944cf49bb451b456af 271 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 26 271 1.1E-123 T 12-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 AMJ96_CH01738 d3178b0bff6c5c1b42a33aff30dbb734 122 ProSitePatterns PS00646 Ribosomal protein S13 signature. 88 101 - T 12-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01738 d3178b0bff6c5c1b42a33aff30dbb734 122 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 119 27.216 T 12-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01738 d3178b0bff6c5c1b42a33aff30dbb734 122 Gene3D G3DSA:4.10.910.10 73 118 9.3E-27 T 12-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01738 d3178b0bff6c5c1b42a33aff30dbb734 122 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 115 8.6E-54 T 12-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01738 d3178b0bff6c5c1b42a33aff30dbb734 122 Gene3D G3DSA:1.10.8.50 1 72 9.3E-28 T 12-10-2018 AMJ96_CH01738 d3178b0bff6c5c1b42a33aff30dbb734 122 Pfam PF00416 Ribosomal protein S13/S18 3 109 5.8E-32 T 12-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01738 d3178b0bff6c5c1b42a33aff30dbb734 122 SUPERFAMILY SSF46946 2 121 2.35E-46 T 12-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AMJ96_CH01738 d3178b0bff6c5c1b42a33aff30dbb734 122 PIRSF PIRSF002134 1 122 2.4E-44 T 12-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01232 f391db86f4edfc5b07bace7fffb63914 347 SUPERFAMILY SSF50129 1 167 1.24E-48 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_CH01232 f391db86f4edfc5b07bace7fffb63914 347 SUPERFAMILY SSF51735 138 313 6.99E-42 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01232 f391db86f4edfc5b07bace7fffb63914 347 Pfam PF00107 Zinc-binding dehydrogenase 176 303 2.8E-28 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_CH01232 f391db86f4edfc5b07bace7fffb63914 347 SMART SM00829 8 343 1.4E-7 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_CH01232 f391db86f4edfc5b07bace7fffb63914 347 Gene3D G3DSA:3.90.180.10 1 345 6.1E-92 T 12-10-2018 AMJ96_CH01232 f391db86f4edfc5b07bace7fffb63914 347 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMJ96_CH01232 f391db86f4edfc5b07bace7fffb63914 347 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 130 5.1E-29 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_PB00388 d15021279b12275209095b35059200bf 110 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 45 98 6.0E-9 T 12-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 AMJ96_PB00388 d15021279b12275209095b35059200bf 110 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 63 70 - T 12-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 AMJ96_PB00388 d15021279b12275209095b35059200bf 110 Gene3D G3DSA:3.40.50.1980 31 103 7.0E-15 T 12-10-2018 AMJ96_PB00388 d15021279b12275209095b35059200bf 110 SUPERFAMILY SSF53807 2 97 9.81E-18 T 12-10-2018 AMJ96_CH00435 7ccc158e0d64cd2d13f381865748d099 265 Gene3D G3DSA:3.30.70.580 1 108 5.7E-31 T 12-10-2018 AMJ96_CH00435 7ccc158e0d64cd2d13f381865748d099 265 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 247 32.667 T 12-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH00435 7ccc158e0d64cd2d13f381865748d099 265 Gene3D G3DSA:3.30.70.660 109 246 4.1E-43 T 12-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 AMJ96_CH00435 7ccc158e0d64cd2d13f381865748d099 265 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 4 241 5.3E-56 T 12-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH00435 7ccc158e0d64cd2d13f381865748d099 265 PIRSF PIRSF001430 1 261 4.7E-70 T 12-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH00435 7ccc158e0d64cd2d13f381865748d099 265 SUPERFAMILY SSF55120 1 252 6.33E-82 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH00435 7ccc158e0d64cd2d13f381865748d099 265 Pfam PF01416 tRNA pseudouridine synthase 8 106 8.6E-11 T 12-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH00435 7ccc158e0d64cd2d13f381865748d099 265 Pfam PF01416 tRNA pseudouridine synthase 146 248 2.3E-29 T 12-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH03188 65403db1e5a01408a8167494c67e27c3 153 Pfam PF00583 Acetyltransferase (GNAT) family 28 141 3.1E-11 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH03188 65403db1e5a01408a8167494c67e27c3 153 Gene3D G3DSA:3.40.630.30 5 153 1.6E-32 T 12-10-2018 AMJ96_CH03188 65403db1e5a01408a8167494c67e27c3 153 SUPERFAMILY SSF55729 5 147 1.22E-25 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_PC00022 c87e0e43e6d507a15b4545ba6a32f894 632 ProSitePatterns PS00211 ABC transporters family signature. 512 526 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00022 c87e0e43e6d507a15b4545ba6a32f894 632 SMART SM00382 400 586 2.0E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00022 c87e0e43e6d507a15b4545ba6a32f894 632 Gene3D G3DSA:3.40.50.300 371 619 6.5E-86 T 12-10-2018 AMJ96_PC00022 c87e0e43e6d507a15b4545ba6a32f894 632 Pfam PF00005 ABC transporter 391 540 1.2E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00022 c87e0e43e6d507a15b4545ba6a32f894 632 SUPERFAMILY SSF90123 44 360 4.05E-69 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_PC00022 c87e0e43e6d507a15b4545ba6a32f894 632 SUPERFAMILY SSF52540 368 610 3.15E-88 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00022 c87e0e43e6d507a15b4545ba6a32f894 632 Pfam PF00664 ABC transporter transmembrane region 65 327 9.0E-37 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_PC00022 c87e0e43e6d507a15b4545ba6a32f894 632 Gene3D G3DSA:1.20.1560.10 33 360 2.5E-76 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH03870 80554ae68c1d9080f3cb3fe2ea90a324 321 SUPERFAMILY SSF52283 3 131 3.02E-26 T 12-10-2018 AMJ96_CH03870 80554ae68c1d9080f3cb3fe2ea90a324 321 Gene3D G3DSA:3.40.50.720 98 283 3.0E-98 T 12-10-2018 AMJ96_CH03870 80554ae68c1d9080f3cb3fe2ea90a324 321 Gene3D G3DSA:3.40.50.720 7 302 3.0E-98 T 12-10-2018 AMJ96_CH03870 80554ae68c1d9080f3cb3fe2ea90a324 321 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 106 280 1.3E-42 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMJ96_CH03870 80554ae68c1d9080f3cb3fe2ea90a324 321 SUPERFAMILY SSF51735 99 281 1.26E-47 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03870 80554ae68c1d9080f3cb3fe2ea90a324 321 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 10 311 5.8E-19 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AMJ96_CH00774 5f7aced0f696a28fabe998e943cf84ef 160 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 133 2.1E-34 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type AMJ96_CH00774 5f7aced0f696a28fabe998e943cf84ef 160 Gene3D G3DSA:1.10.10.10 1 141 2.3E-37 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00774 5f7aced0f696a28fabe998e943cf84ef 160 Pfam PF02082 Transcriptional regulator 1 81 3.0E-26 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type AMJ96_CH00774 5f7aced0f696a28fabe998e943cf84ef 160 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 48 66 - T 12-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site AMJ96_CH00774 5f7aced0f696a28fabe998e943cf84ef 160 SUPERFAMILY SSF46785 2 134 2.18E-36 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00197 d9471711c29263c21ba1850381d6060a 129 Gene3D G3DSA:3.40.140.10 1 128 2.4E-45 T 12-10-2018 AMJ96_CH00197 d9471711c29263c21ba1850381d6060a 129 SUPERFAMILY SSF53927 4 126 3.18E-41 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMJ96_CH00197 d9471711c29263c21ba1850381d6060a 129 TIGRFAM TIGR01354 cyt_deam_tetra: cytidine deaminase 4 126 5.7E-44 T 12-10-2018 IPR006262 Cytidine deaminase, homotetrameric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199|Reactome: R-HSA-6798695|Reactome: R-HSA-73614 AMJ96_CH00197 d9471711c29263c21ba1850381d6060a 129 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 52 92 - T 12-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AMJ96_CH00197 d9471711c29263c21ba1850381d6060a 129 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 5 100 3.2E-11 T 12-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain AMJ96_PB00276 6b073b4b85b8d95a80136d08e24f1f87 242 SMART SM00947 80 240 5.4E-50 T 12-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMJ96_PB00276 6b073b4b85b8d95a80136d08e24f1f87 242 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 10 37 4.3E-4 T 12-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMJ96_PB00276 6b073b4b85b8d95a80136d08e24f1f87 242 SUPERFAMILY SSF53056 26 239 8.37E-53 T 12-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 AMJ96_PB00276 6b073b4b85b8d95a80136d08e24f1f87 242 Gene3D G3DSA:3.40.1050.10 37 242 1.1E-60 T 12-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 AMJ96_PB00276 6b073b4b85b8d95a80136d08e24f1f87 242 Pfam PF00484 Carbonic anhydrase 87 235 3.2E-36 T 12-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMJ96_PB00276 6b073b4b85b8d95a80136d08e24f1f87 242 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 92 99 - T 12-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMJ96_CH03805 5fa09587e704be3dadd028263ca05ddc 512 Gene3D G3DSA:2.40.160.20 250 394 4.9E-5 T 12-10-2018 AMJ96_CH03805 5fa09587e704be3dadd028263ca05ddc 512 Pfam PF10082 Putative beta-barrel porin 2 139 512 1.5E-113 T 12-10-2018 IPR018759 Putative beta-barrel porin 2 AMJ96_CH03805 5fa09587e704be3dadd028263ca05ddc 512 SUPERFAMILY SSF103515 224 376 2.35E-8 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily AMJ96_CH00938 fbfea001be7fdbe39a5fad54a260adc0 83 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 13 73 15.816 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMJ96_CH00938 fbfea001be7fdbe39a5fad54a260adc0 83 Pfam PF02609 Exonuclease VII small subunit 14 65 2.9E-20 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMJ96_CH00938 fbfea001be7fdbe39a5fad54a260adc0 83 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 13 53 2.0E-15 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMJ96_CH00938 fbfea001be7fdbe39a5fad54a260adc0 83 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 13 67 2.5E-23 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AMJ96_CH00938 fbfea001be7fdbe39a5fad54a260adc0 83 Gene3D G3DSA:1.10.287.1040 8 81 9.4E-21 T 12-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 AMJ96_CH00938 fbfea001be7fdbe39a5fad54a260adc0 83 SUPERFAMILY SSF116842 8 69 3.27E-20 T 12-10-2018 AMJ96_CH02025 66e7759b24ae164b826228c86d1d4315 418 SUPERFAMILY SSF53383 25 415 1.97E-93 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH02025 66e7759b24ae164b826228c86d1d4315 418 Gene3D G3DSA:3.40.640.10 95 319 7.8E-131 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH02025 66e7759b24ae164b826228c86d1d4315 418 Pfam PF00155 Aminotransferase class I and II 94 411 5.2E-36 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_CH02025 66e7759b24ae164b826228c86d1d4315 418 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 27 415 5.7E-125 T 12-10-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 AMJ96_CH02025 66e7759b24ae164b826228c86d1d4315 418 Gene3D G3DSA:3.90.1150.10 35 411 7.8E-131 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_PD00285 edf687eb447cb71c69e9dfcda3388a72 282 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 40 263 6.2E-39 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PD00285 edf687eb447cb71c69e9dfcda3388a72 282 SMART SM00062 38 266 1.1E-27 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PD00285 edf687eb447cb71c69e9dfcda3388a72 282 Gene3D G3DSA:3.40.190.10 124 225 7.9E-79 T 12-10-2018 AMJ96_PD00285 edf687eb447cb71c69e9dfcda3388a72 282 SUPERFAMILY SSF53850 12 263 1.15E-39 T 12-10-2018 AMJ96_PD00285 edf687eb447cb71c69e9dfcda3388a72 282 TIGRFAM TIGR02995 ectoine_ehuB: ectoine/hydroxyectoine ABC transporter solute-binding protein EhuB 13 278 2.0E-126 T 12-10-2018 IPR014337 Ectoine/Hydroxyectoine ABC transporter, substrate-binding protein EhuB GO:0033294|GO:0051470 AMJ96_PD00285 edf687eb447cb71c69e9dfcda3388a72 282 Gene3D G3DSA:3.40.190.10 45 260 7.9E-79 T 12-10-2018 AMJ96_CH00165 0ae116ddd2d7da2aba60488ec8aa3162 319 SUPERFAMILY SSF161098 114 299 3.14E-33 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00165 0ae116ddd2d7da2aba60488ec8aa3162 319 Gene3D G3DSA:1.10.3720.10 105 310 2.6E-30 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00165 0ae116ddd2d7da2aba60488ec8aa3162 319 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 27 309 2.4E-73 T 12-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 AMJ96_CH00165 0ae116ddd2d7da2aba60488ec8aa3162 319 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 137 309 5.5E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00535 15470909e4a813a925c7f34e30585557 587 Pfam PF08447 PAS fold 52 132 9.4E-14 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 AMJ96_PD00535 15470909e4a813a925c7f34e30585557 587 Pfam PF00563 EAL domain 330 560 6.7E-58 T 12-10-2018 IPR001633 EAL domain AMJ96_PD00535 15470909e4a813a925c7f34e30585557 587 Gene3D G3DSA:3.30.450.20 29 93 5.5E-10 T 12-10-2018 AMJ96_PD00535 15470909e4a813a925c7f34e30585557 587 Gene3D G3DSA:2.10.70.100 97 141 8.0E-8 T 12-10-2018 AMJ96_PD00535 15470909e4a813a925c7f34e30585557 587 SUPERFAMILY SSF141868 330 572 1.44E-61 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_PD00535 15470909e4a813a925c7f34e30585557 587 Pfam PF00990 Diguanylate cyclase, GGDEF domain 159 310 3.4E-39 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PD00535 15470909e4a813a925c7f34e30585557 587 SMART SM00052 324 565 3.8E-67 T 12-10-2018 IPR001633 EAL domain AMJ96_PD00535 15470909e4a813a925c7f34e30585557 587 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 158 313 5.5E-39 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PD00535 15470909e4a813a925c7f34e30585557 587 SUPERFAMILY SSF55785 16 139 7.85E-14 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PD00535 15470909e4a813a925c7f34e30585557 587 SUPERFAMILY SSF55073 164 316 1.26E-41 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_PD00535 15470909e4a813a925c7f34e30585557 587 SMART SM00267 148 314 8.1E-53 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PD00535 15470909e4a813a925c7f34e30585557 587 Gene3D G3DSA:3.20.20.450 323 576 8.3E-68 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_PD00535 15470909e4a813a925c7f34e30585557 587 Gene3D G3DSA:3.30.70.270 145 316 1.3E-47 T 12-10-2018 AMJ96_CH04010 b6fc752b8cee9aca231490530a3a5f9d 413 Gene3D G3DSA:3.60.70.12 14 284 5.8E-86 T 12-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMJ96_CH04010 b6fc752b8cee9aca231490530a3a5f9d 413 Pfam PF01960 ArgJ family 24 413 5.2E-139 T 12-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMJ96_CH04010 b6fc752b8cee9aca231490530a3a5f9d 413 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 26 411 1.0E-176 T 12-10-2018 AMJ96_CH04010 b6fc752b8cee9aca231490530a3a5f9d 413 SUPERFAMILY SSF56266 20 410 7.19E-135 T 12-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMJ96_CH04010 b6fc752b8cee9aca231490530a3a5f9d 413 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 19 413 8.8E-115 T 12-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMJ96_CH04010 b6fc752b8cee9aca231490530a3a5f9d 413 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 413 153.948 T 12-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMJ96_CH04010 b6fc752b8cee9aca231490530a3a5f9d 413 Gene3D G3DSA:3.10.20.340 285 413 4.2E-46 T 12-10-2018 AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 369 418 1.0E-18 T 12-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 SUPERFAMILY SSF69705 8 130 3.53E-38 T 12-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 SUPERFAMILY SSF54814 204 281 1.9E-31 T 12-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 SUPERFAMILY SSF47794 357 418 1.49E-15 T 12-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 SMART SM00316 138 204 1.3E-11 T 12-10-2018 IPR022967 RNA-binding domain, S1 AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 Gene3D G3DSA:2.40.50.140 140 202 1.7E-24 T 12-10-2018 AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 Gene3D G3DSA:3.30.300.20 203 281 1.1E-33 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 9 346 1.8E-140 T 12-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 Pfam PF13184 NusA-like KH domain 234 300 1.7E-28 T 12-10-2018 IPR025249 KH domain, NusA-like GO:0003723 AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 7 414 31.028 T 12-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 Pfam PF08529 NusA N-terminal domain 9 129 1.1E-34 T 12-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 Pfam PF14520 Helix-hairpin-helix domain 377 416 8.3E-5 T 12-10-2018 AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 Gene3D G3DSA:3.30.1480.10 7 132 6.5E-41 T 12-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 SMART SM00322 308 419 0.032 T 12-10-2018 IPR004087 K Homology domain GO:0003676 AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 SMART SM00322 234 307 1.2 T 12-10-2018 IPR004087 K Homology domain GO:0003676 AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 Gene3D G3DSA:3.30.300.20 282 350 3.7E-29 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 Gene3D G3DSA:1.10.150.20 359 424 1.4E-22 T 12-10-2018 AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 SUPERFAMILY SSF54814 283 346 3.2E-17 T 12-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 Pfam PF00575 S1 RNA binding domain 136 198 5.5E-8 T 12-10-2018 IPR003029 S1 domain GO:0003676 AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 SUPERFAMILY SSF50249 136 203 5.58E-21 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH00121 f9614bd53fcede13a1358bc41318d2d9 533 Gene3D G3DSA:1.10.150.20 435 485 7.0E-7 T 12-10-2018 AMJ96_CH03268 1359aef513518c71b0c55a67c23a0c74 394 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 23 386 8.1E-119 T 12-10-2018 IPR010645 Uncharacterised MFS-type transporter YbfB AMJ96_CH03268 1359aef513518c71b0c55a67c23a0c74 394 SUPERFAMILY SSF103473 15 392 9.55E-31 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH03268 1359aef513518c71b0c55a67c23a0c74 394 Gene3D G3DSA:1.20.1250.20 14 392 2.7E-24 T 12-10-2018 AMJ96_CH00407 221a2ff166d8692cb014ff5e1795e3fc 908 SUPERFAMILY SSF48334 298 603 1.02E-72 T 12-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily AMJ96_CH00407 221a2ff166d8692cb014ff5e1795e3fc 908 SUPERFAMILY SSF55271 23 139 1.96E-40 T 12-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AMJ96_CH00407 221a2ff166d8692cb014ff5e1795e3fc 908 Pfam PF01624 MutS domain I 27 143 3.5E-42 T 12-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AMJ96_CH00407 221a2ff166d8692cb014ff5e1795e3fc 908 SMART SM00534 655 842 6.6E-114 T 12-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AMJ96_CH00407 221a2ff166d8692cb014ff5e1795e3fc 908 Pfam PF05192 MutS domain III 300 598 1.0E-35 T 12-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AMJ96_CH00407 221a2ff166d8692cb014ff5e1795e3fc 908 Gene3D G3DSA:3.40.50.300 608 908 8.1E-96 T 12-10-2018 AMJ96_CH00407 221a2ff166d8692cb014ff5e1795e3fc 908 SUPERFAMILY SSF52540 606 846 5.64E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00407 221a2ff166d8692cb014ff5e1795e3fc 908 Gene3D G3DSA:1.10.1420.10 420 542 1.2E-80 T 12-10-2018 AMJ96_CH00407 221a2ff166d8692cb014ff5e1795e3fc 908 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 26 899 23.629 T 12-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 AMJ96_CH00407 221a2ff166d8692cb014ff5e1795e3fc 908 Gene3D G3DSA:1.10.1420.10 297 598 1.2E-80 T 12-10-2018 AMJ96_CH00407 221a2ff166d8692cb014ff5e1795e3fc 908 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 27 905 1.3E-249 T 12-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 AMJ96_CH00407 221a2ff166d8692cb014ff5e1795e3fc 908 Pfam PF00488 MutS domain V 658 845 1.3E-85 T 12-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AMJ96_CH00407 221a2ff166d8692cb014ff5e1795e3fc 908 Pfam PF05190 MutS family domain IV 463 557 3.5E-20 T 12-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 AMJ96_CH00407 221a2ff166d8692cb014ff5e1795e3fc 908 Gene3D G3DSA:3.40.1170.10 18 145 1.9E-47 T 12-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AMJ96_CH00407 221a2ff166d8692cb014ff5e1795e3fc 908 Pfam PF05188 MutS domain II 152 279 2.9E-26 T 12-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 AMJ96_CH00407 221a2ff166d8692cb014ff5e1795e3fc 908 PIRSF PIRSF037677 18 888 4.9E-151 T 12-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 AMJ96_CH00407 221a2ff166d8692cb014ff5e1795e3fc 908 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 736 752 - T 12-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AMJ96_CH00407 221a2ff166d8692cb014ff5e1795e3fc 908 Gene3D G3DSA:3.30.420.110 151 289 2.5E-22 T 12-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 AMJ96_CH00407 221a2ff166d8692cb014ff5e1795e3fc 908 SMART SM00533 314 630 2.2E-79 T 12-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AMJ96_CH00407 221a2ff166d8692cb014ff5e1795e3fc 908 SUPERFAMILY SSF53150 141 311 1.44E-33 T 12-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 AMJ96_PB00385 e1fd5ab7499db59d21b4a029aeb0f715 105 Pfam PF12838 4Fe-4S dicluster domain 25 93 5.5E-8 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMJ96_PB00385 e1fd5ab7499db59d21b4a029aeb0f715 105 TIGRFAM TIGR02936 fdxN_nitrog: ferredoxin III, nif-specific 5 98 2.7E-38 T 12-10-2018 IPR014283 Ferredoxin III 4[4Fe-4S], nif-specific AMJ96_PB00385 e1fd5ab7499db59d21b4a029aeb0f715 105 SUPERFAMILY SSF46548 13 96 1.92E-16 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMJ96_PB00385 e1fd5ab7499db59d21b4a029aeb0f715 105 Gene3D G3DSA:3.30.70.20 19 105 9.2E-9 T 12-10-2018 AMJ96_PB00385 e1fd5ab7499db59d21b4a029aeb0f715 105 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 80 91 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMJ96_PD00309 f2b1f1b1860acf8b47b5777667d70f6d 341 Pfam PF02653 Branched-chain amino acid transport system / permease component 31 300 3.0E-49 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_PD00458 f5fb4a1c50fe68965df0a4a75da82f77 284 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 17 48 3.4E-5 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMJ96_PD00458 f5fb4a1c50fe68965df0a4a75da82f77 284 Gene3D G3DSA:1.10.3720.10 72 284 2.3E-9 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00458 f5fb4a1c50fe68965df0a4a75da82f77 284 SUPERFAMILY SSF161098 78 267 7.36E-16 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00458 f5fb4a1c50fe68965df0a4a75da82f77 284 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 280 2.3E-22 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02270 19d9f4ab5eb2a001dd8f5ea5d4b233b4 508 Pfam PF05036 Sporulation related domain 427 505 3.6E-12 T 12-10-2018 IPR007730 Sporulation-like domain GO:0042834 AMJ96_CH02270 19d9f4ab5eb2a001dd8f5ea5d4b233b4 508 SUPERFAMILY SSF56601 19 278 3.76E-71 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMJ96_CH02270 19d9f4ab5eb2a001dd8f5ea5d4b233b4 508 Gene3D G3DSA:3.40.710.10 24 300 6.6E-75 T 12-10-2018 AMJ96_CH02270 19d9f4ab5eb2a001dd8f5ea5d4b233b4 508 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 48 264 1.5E-54 T 12-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AMJ96_CH02270 19d9f4ab5eb2a001dd8f5ea5d4b233b4 508 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 152 165 9.9E-10 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMJ96_CH02270 19d9f4ab5eb2a001dd8f5ea5d4b233b4 508 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 72 83 9.9E-10 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMJ96_CH02270 19d9f4ab5eb2a001dd8f5ea5d4b233b4 508 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 125 142 9.9E-10 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMJ96_CH02270 19d9f4ab5eb2a001dd8f5ea5d4b233b4 508 SUPERFAMILY SSF110997 426 504 8.24E-7 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMJ96_CH02270 19d9f4ab5eb2a001dd8f5ea5d4b233b4 508 Gene3D G3DSA:3.30.70.1070 429 507 7.2E-7 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMJ96_PB00411 c2126f1706c3fe09b01324731aae676d 88 Pfam PF01527 Transposase 4 71 1.5E-16 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMJ96_PB00411 c2126f1706c3fe09b01324731aae676d 88 SUPERFAMILY SSF46689 1 73 2.33E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH00374 a7f41a9b7b6f6175c5e8cb7f677615a9 400 Gene3D G3DSA:3.80.30.20 6 324 1.5E-92 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMJ96_CH00374 a7f41a9b7b6f6175c5e8cb7f677615a9 400 SMART SM00729 23 243 6.9E-54 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMJ96_CH00374 a7f41a9b7b6f6175c5e8cb7f677615a9 400 Pfam PF04055 Radical SAM superfamily 28 197 2.9E-21 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMJ96_CH00374 a7f41a9b7b6f6175c5e8cb7f677615a9 400 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 26 361 4.5E-88 T 12-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 AMJ96_CH00374 a7f41a9b7b6f6175c5e8cb7f677615a9 400 Pfam PF06969 HemN C-terminal domain 329 389 2.1E-8 T 12-10-2018 IPR010723 HemN, C-terminal AMJ96_CH00374 a7f41a9b7b6f6175c5e8cb7f677615a9 400 SUPERFAMILY SSF102114 14 398 1.96E-107 T 12-10-2018 AMJ96_CH01180 de81dbb7c26e7abe4c116f971ac3cacf 334 Pfam PF00107 Zinc-binding dehydrogenase 157 272 2.7E-29 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_CH01180 de81dbb7c26e7abe4c116f971ac3cacf 334 SUPERFAMILY SSF51735 118 293 3.71E-48 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01180 de81dbb7c26e7abe4c116f971ac3cacf 334 Gene3D G3DSA:3.40.50.720 126 268 2.4E-122 T 12-10-2018 AMJ96_CH01180 de81dbb7c26e7abe4c116f971ac3cacf 334 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 7 331 2.0E-143 T 12-10-2018 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 AMJ96_CH01180 de81dbb7c26e7abe4c116f971ac3cacf 334 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 34 93 3.8E-9 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_CH01180 de81dbb7c26e7abe4c116f971ac3cacf 334 SMART SM00829 16 329 1.8E-52 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_CH01180 de81dbb7c26e7abe4c116f971ac3cacf 334 SUPERFAMILY SSF50129 7 144 8.52E-36 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_CH01180 de81dbb7c26e7abe4c116f971ac3cacf 334 Gene3D G3DSA:3.90.180.10 26 327 2.4E-122 T 12-10-2018 AMJ96_CH03525 f5bad3259a1abea2ae424106c7ed8c1f 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 100 1.2E-47 T 12-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_CH03525 f5bad3259a1abea2ae424106c7ed8c1f 100 Pfam PF00547 Urease, gamma subunit 1 99 2.9E-47 T 12-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_CH03525 f5bad3259a1abea2ae424106c7ed8c1f 100 PIRSF PIRSF001223 1 100 1.5E-49 T 12-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_CH03525 f5bad3259a1abea2ae424106c7ed8c1f 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 5.0E-45 T 12-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_CH03525 f5bad3259a1abea2ae424106c7ed8c1f 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 33.951 T 12-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_CH03525 f5bad3259a1abea2ae424106c7ed8c1f 100 SUPERFAMILY SSF54111 1 100 3.53E-45 T 12-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_CH03525 f5bad3259a1abea2ae424106c7ed8c1f 100 Gene3D G3DSA:3.30.280.10 1 100 2.7E-47 T 12-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_CH01200 110eaacf27a65880d70944b91ddf1ec5 770 SMART SM00267 327 500 7.9E-59 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01200 110eaacf27a65880d70944b91ddf1ec5 770 Pfam PF13185 GAF domain 198 326 1.4E-12 T 12-10-2018 IPR003018 GAF domain GO:0005515 AMJ96_CH01200 110eaacf27a65880d70944b91ddf1ec5 770 SUPERFAMILY SSF55073 343 501 1.69E-47 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH01200 110eaacf27a65880d70944b91ddf1ec5 770 PIRSF PIRSF005925 34 767 9.1E-181 T 12-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase AMJ96_CH01200 110eaacf27a65880d70944b91ddf1ec5 770 SUPERFAMILY SSF55785 49 162 1.27E-15 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH01200 110eaacf27a65880d70944b91ddf1ec5 770 SMART SM00052 510 755 3.9E-113 T 12-10-2018 IPR001633 EAL domain AMJ96_CH01200 110eaacf27a65880d70944b91ddf1ec5 770 SMART SM00091 44 111 4.9E-4 T 12-10-2018 IPR000014 PAS domain AMJ96_CH01200 110eaacf27a65880d70944b91ddf1ec5 770 SUPERFAMILY SSF141868 515 765 5.75E-89 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH01200 110eaacf27a65880d70944b91ddf1ec5 770 Gene3D G3DSA:3.30.450.40 182 333 1.8E-27 T 12-10-2018 IPR029016 GAF-like domain superfamily AMJ96_CH01200 110eaacf27a65880d70944b91ddf1ec5 770 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 45 165 5.4E-9 T 12-10-2018 IPR000014 PAS domain AMJ96_CH01200 110eaacf27a65880d70944b91ddf1ec5 770 Gene3D G3DSA:3.30.70.270 334 503 3.6E-55 T 12-10-2018 AMJ96_CH01200 110eaacf27a65880d70944b91ddf1ec5 770 Pfam PF00563 EAL domain 515 750 1.3E-74 T 12-10-2018 IPR001633 EAL domain AMJ96_CH01200 110eaacf27a65880d70944b91ddf1ec5 770 Gene3D G3DSA:3.30.450.20 30 171 2.4E-22 T 12-10-2018 AMJ96_CH01200 110eaacf27a65880d70944b91ddf1ec5 770 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 335 499 2.0E-47 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01200 110eaacf27a65880d70944b91ddf1ec5 770 SMART SM00065 183 335 5.6E-12 T 12-10-2018 IPR003018 GAF domain GO:0005515 AMJ96_CH01200 110eaacf27a65880d70944b91ddf1ec5 770 Pfam PF00990 Diguanylate cyclase, GGDEF domain 338 496 1.4E-47 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01200 110eaacf27a65880d70944b91ddf1ec5 770 Pfam PF08448 PAS fold 52 162 3.4E-19 T 12-10-2018 IPR013656 PAS fold-4 AMJ96_CH01200 110eaacf27a65880d70944b91ddf1ec5 770 Gene3D G3DSA:3.20.20.450 513 764 2.4E-101 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH01200 110eaacf27a65880d70944b91ddf1ec5 770 SUPERFAMILY SSF55781 155 327 1.77E-26 T 12-10-2018 AMJ96_CH03510 d933f0efdf8a63012a8ede29db47062a 309 Gene3D G3DSA:1.10.3720.10 86 305 4.4E-16 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03510 d933f0efdf8a63012a8ede29db47062a 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 303 6.1E-19 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03510 d933f0efdf8a63012a8ede29db47062a 309 SUPERFAMILY SSF161098 88 286 9.68E-17 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03765 8f5f4e19a814d5987b0cc20cdd429861 169 SUPERFAMILY SSF50341 18 160 6.41E-28 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMJ96_CH03765 8f5f4e19a814d5987b0cc20cdd429861 169 Gene3D G3DSA:2.30.30.40 23 152 9.2E-30 T 12-10-2018 AMJ96_CH03765 8f5f4e19a814d5987b0cc20cdd429861 169 SMART SM00260 17 158 4.1E-28 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMJ96_CH03765 8f5f4e19a814d5987b0cc20cdd429861 169 Gene3D G3DSA:2.40.50.180 40 153 9.2E-30 T 12-10-2018 AMJ96_CH03765 8f5f4e19a814d5987b0cc20cdd429861 169 Pfam PF01584 CheW-like domain 21 159 3.7E-25 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMJ96_CH03997 fb2e7c811245e629521882c820f79586 359 Pfam PF03462 PCRF domain 13 204 1.3E-67 T 12-10-2018 IPR005139 Peptide chain release factor GO:0006415 AMJ96_CH03997 fb2e7c811245e629521882c820f79586 359 Gene3D G3DSA:3.30.70.1660 113 341 2.3E-99 T 12-10-2018 AMJ96_CH03997 fb2e7c811245e629521882c820f79586 359 SUPERFAMILY SSF75620 12 352 8.24E-127 T 12-10-2018 AMJ96_CH03997 fb2e7c811245e629521882c820f79586 359 SMART SM00937 64 179 1.8E-60 T 12-10-2018 IPR005139 Peptide chain release factor GO:0006415 AMJ96_CH03997 fb2e7c811245e629521882c820f79586 359 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMJ96_CH03997 fb2e7c811245e629521882c820f79586 359 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 7 356 1.5E-153 T 12-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 AMJ96_CH03997 fb2e7c811245e629521882c820f79586 359 Gene3D G3DSA:3.30.160.20 211 296 2.3E-99 T 12-10-2018 AMJ96_CH03997 fb2e7c811245e629521882c820f79586 359 Pfam PF00472 RF-1 domain 212 320 7.5E-41 T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMJ96_CH03997 fb2e7c811245e629521882c820f79586 359 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 356 39.701 T 12-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 AMJ96_CH00161 eccc5f84ea010ed5adc769f064cf0dbe 198 SMART SM00072 14 194 2.6E-4 T 12-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AMJ96_CH00161 eccc5f84ea010ed5adc769f064cf0dbe 198 Hamap MF_00836 Ribose 1,5-bisphosphate phosphokinase PhnN [phnN]. 14 191 35.161 T 12-10-2018 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_CH00161 eccc5f84ea010ed5adc769f064cf0dbe 198 Gene3D G3DSA:3.40.50.300 19 164 1.6E-17 T 12-10-2018 AMJ96_CH00161 eccc5f84ea010ed5adc769f064cf0dbe 198 TIGRFAM TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN 15 191 1.6E-67 T 12-10-2018 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_CH00161 eccc5f84ea010ed5adc769f064cf0dbe 198 Pfam PF13238 AAA domain 18 151 2.9E-7 T 12-10-2018 AMJ96_CH00161 eccc5f84ea010ed5adc769f064cf0dbe 198 Gene3D G3DSA:3.30.63.10 49 104 1.6E-17 T 12-10-2018 AMJ96_CH00161 eccc5f84ea010ed5adc769f064cf0dbe 198 SUPERFAMILY SSF52540 12 195 7.87E-35 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00309 f509ea4f59f6068be9e3847bf77a1026 279 Pfam PF09339 IclR helix-turn-helix domain 35 84 4.6E-6 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMJ96_PC00309 f509ea4f59f6068be9e3847bf77a1026 279 Gene3D G3DSA:1.10.10.10 27 103 4.9E-11 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00309 f509ea4f59f6068be9e3847bf77a1026 279 SUPERFAMILY SSF46785 32 105 2.07E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00309 f509ea4f59f6068be9e3847bf77a1026 279 SUPERFAMILY SSF55781 96 277 1.45E-38 T 12-10-2018 AMJ96_PC00309 f509ea4f59f6068be9e3847bf77a1026 279 Pfam PF01614 Bacterial transcriptional regulator 150 272 4.3E-17 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal AMJ96_PC00309 f509ea4f59f6068be9e3847bf77a1026 279 Gene3D G3DSA:3.30.450.40 105 279 1.3E-35 T 12-10-2018 IPR029016 GAF-like domain superfamily AMJ96_PC00309 f509ea4f59f6068be9e3847bf77a1026 279 SMART SM00346 32 121 0.0023 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMJ96_CH00740 21880d9889a4f17553a74b453359b261 387 Gene3D G3DSA:1.10.3720.10 134 373 4.1E-50 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00740 21880d9889a4f17553a74b453359b261 387 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 190 379 2.8E-12 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00740 21880d9889a4f17553a74b453359b261 387 SUPERFAMILY SSF161098 13 386 9.0E-61 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03622 96d1b9f7dd024c803e67fe33a022dc9d 121 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 22 119 3.2E-35 T 12-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03622 96d1b9f7dd024c803e67fe33a022dc9d 121 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 2 120 19.491 T 12-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 AMJ96_CH03622 96d1b9f7dd024c803e67fe33a022dc9d 121 Gene3D G3DSA:1.20.58.1610 1 120 8.6E-39 T 12-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH00912 c9e0d59be30c9210fe16e6d41f3714af 769 SUPERFAMILY SSF47781 559 630 7.56E-20 T 12-10-2018 IPR010994 RuvA domain 2-like AMJ96_CH00912 c9e0d59be30c9210fe16e6d41f3714af 769 Pfam PF16921 Tex protein YqgF-like domain 325 450 2.4E-50 T 12-10-2018 IPR032639 Tex protein, YqgF-like domain AMJ96_CH00912 c9e0d59be30c9210fe16e6d41f3714af 769 Pfam PF00575 S1 RNA binding domain 649 719 4.9E-21 T 12-10-2018 IPR003029 S1 domain GO:0003676 AMJ96_CH00912 c9e0d59be30c9210fe16e6d41f3714af 769 Gene3D G3DSA:3.30.420.140 323 450 5.7E-145 T 12-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 AMJ96_CH00912 c9e0d59be30c9210fe16e6d41f3714af 769 SUPERFAMILY SSF50249 637 722 2.54E-26 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH00912 c9e0d59be30c9210fe16e6d41f3714af 769 SUPERFAMILY SSF47781 469 557 1.22E-26 T 12-10-2018 IPR010994 RuvA domain 2-like AMJ96_CH00912 c9e0d59be30c9210fe16e6d41f3714af 769 SUPERFAMILY SSF158832 9 319 5.36E-109 T 12-10-2018 AMJ96_CH00912 c9e0d59be30c9210fe16e6d41f3714af 769 Pfam PF09371 Tex-like protein N-terminal domain 12 193 7.2E-66 T 12-10-2018 IPR018974 Tex-like protein, N-terminal AMJ96_CH00912 c9e0d59be30c9210fe16e6d41f3714af 769 SMART SM00732 324 423 1.3E-36 T 12-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 AMJ96_CH00912 c9e0d59be30c9210fe16e6d41f3714af 769 Gene3D G3DSA:1.10.3500.10 115 497 5.7E-145 T 12-10-2018 IPR023323 Tex-like domain superfamily AMJ96_CH00912 c9e0d59be30c9210fe16e6d41f3714af 769 Gene3D G3DSA:2.40.50.140 630 724 1.5E-29 T 12-10-2018 AMJ96_CH00912 c9e0d59be30c9210fe16e6d41f3714af 769 Gene3D G3DSA:1.10.150.310 498 629 8.3E-48 T 12-10-2018 AMJ96_CH00912 c9e0d59be30c9210fe16e6d41f3714af 769 SUPERFAMILY SSF53098 320 468 1.14E-48 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_CH00912 c9e0d59be30c9210fe16e6d41f3714af 769 SMART SM00316 648 719 3.3E-26 T 12-10-2018 IPR022967 RNA-binding domain, S1 AMJ96_CH00912 c9e0d59be30c9210fe16e6d41f3714af 769 Pfam PF12836 Helix-hairpin-helix motif 490 554 3.6E-26 T 12-10-2018 AMJ96_CH00912 c9e0d59be30c9210fe16e6d41f3714af 769 Gene3D G3DSA:1.10.10.650 5 112 1.7E-38 T 12-10-2018 IPR023319 Tex-like protein, HTH domain superfamily AMJ96_CH04200 9e5a0171ab2b7758393e24274ac09fd5 520 SUPERFAMILY SSF47364 217 289 3.01E-20 T 12-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 AMJ96_CH04200 9e5a0171ab2b7758393e24274ac09fd5 520 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 490 503 - T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMJ96_CH04200 9e5a0171ab2b7758393e24274ac09fd5 520 SUPERFAMILY SSF52540 314 516 2.13E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04200 9e5a0171ab2b7758393e24274ac09fd5 520 SMART SM00382 315 495 5.2E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04200 9e5a0171ab2b7758393e24274ac09fd5 520 Pfam PF02881 SRP54-type protein, helical bundle domain 233 294 2.1E-8 T 12-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMJ96_CH04200 9e5a0171ab2b7758393e24274ac09fd5 520 Gene3D G3DSA:3.40.50.300 316 505 6.6E-108 T 12-10-2018 AMJ96_CH04200 9e5a0171ab2b7758393e24274ac09fd5 520 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 245 515 8.3E-96 T 12-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 AMJ96_CH04200 9e5a0171ab2b7758393e24274ac09fd5 520 SMART SM00963 222 301 2.0E-15 T 12-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMJ96_CH04200 9e5a0171ab2b7758393e24274ac09fd5 520 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 245 517 59.961 T 12-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 AMJ96_CH04200 9e5a0171ab2b7758393e24274ac09fd5 520 SMART SM00962 316 517 6.2E-110 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMJ96_CH04200 9e5a0171ab2b7758393e24274ac09fd5 520 Pfam PF00448 SRP54-type protein, GTPase domain 316 515 3.9E-72 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMJ96_CH04200 9e5a0171ab2b7758393e24274ac09fd5 520 Gene3D G3DSA:1.20.120.140 219 515 6.6E-108 T 12-10-2018 AMJ96_CH01408 5c4ae46544fdfaca693c6889c515fce3 345 SUPERFAMILY SSF55347 128 272 1.0E-18 T 12-10-2018 AMJ96_CH01408 5c4ae46544fdfaca693c6889c515fce3 345 Gene3D G3DSA:3.30.360.10 126 288 1.3E-90 T 12-10-2018 AMJ96_CH01408 5c4ae46544fdfaca693c6889c515fce3 345 SUPERFAMILY SSF51735 2 147 8.6E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01408 5c4ae46544fdfaca693c6889c515fce3 345 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 121 9.1E-26 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_CH01408 5c4ae46544fdfaca693c6889c515fce3 345 Gene3D G3DSA:3.40.50.720 4 321 1.3E-90 T 12-10-2018 AMJ96_CH02443 d7ab3841d6b2030bf8a095da22ad19d2 463 ProSitePatterns PS00163 Fumarate lyases signature. 317 326 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AMJ96_CH02443 d7ab3841d6b2030bf8a095da22ad19d2 463 Gene3D G3DSA:1.20.200.10 139 406 2.9E-121 T 12-10-2018 AMJ96_CH02443 d7ab3841d6b2030bf8a095da22ad19d2 463 Gene3D G3DSA:1.10.275.10 5 138 2.2E-57 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal AMJ96_CH02443 d7ab3841d6b2030bf8a095da22ad19d2 463 Pfam PF00206 Lyase 12 342 6.7E-110 T 12-10-2018 IPR022761 Fumarate lyase, N-terminal AMJ96_CH02443 d7ab3841d6b2030bf8a095da22ad19d2 463 Gene3D G3DSA:1.10.40.30 408 463 8.6E-28 T 12-10-2018 AMJ96_CH02443 d7ab3841d6b2030bf8a095da22ad19d2 463 PRINTS PR00145 Argininosuccinate lyase family signature 175 195 9.5E-5 T 12-10-2018 AMJ96_CH02443 d7ab3841d6b2030bf8a095da22ad19d2 463 PRINTS PR00145 Argininosuccinate lyase family signature 317 333 9.5E-5 T 12-10-2018 AMJ96_CH02443 d7ab3841d6b2030bf8a095da22ad19d2 463 PRINTS PR00145 Argininosuccinate lyase family signature 133 155 9.5E-5 T 12-10-2018 AMJ96_CH02443 d7ab3841d6b2030bf8a095da22ad19d2 463 Hamap MF_00743 Fumarate hydratase class II [fumC]. 4 462 90.519 T 12-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMJ96_CH02443 d7ab3841d6b2030bf8a095da22ad19d2 463 Pfam PF10415 Fumarase C C-terminus 408 461 3.0E-23 T 12-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMJ96_CH02443 d7ab3841d6b2030bf8a095da22ad19d2 463 SUPERFAMILY SSF48557 4 462 5.65E-154 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMJ96_CH02443 d7ab3841d6b2030bf8a095da22ad19d2 463 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 5 461 8.4E-223 T 12-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMJ96_CH02443 d7ab3841d6b2030bf8a095da22ad19d2 463 PRINTS PR00149 Fumarate lyase superfamily signature 134 152 3.7E-32 T 12-10-2018 IPR000362 Fumarate lyase family AMJ96_CH02443 d7ab3841d6b2030bf8a095da22ad19d2 463 PRINTS PR00149 Fumarate lyase superfamily signature 317 333 3.7E-32 T 12-10-2018 IPR000362 Fumarate lyase family AMJ96_CH02443 d7ab3841d6b2030bf8a095da22ad19d2 463 PRINTS PR00149 Fumarate lyase superfamily signature 180 198 3.7E-32 T 12-10-2018 IPR000362 Fumarate lyase family AMJ96_CH02443 d7ab3841d6b2030bf8a095da22ad19d2 463 PRINTS PR00149 Fumarate lyase superfamily signature 271 298 3.7E-32 T 12-10-2018 IPR000362 Fumarate lyase family AMJ96_PC00358 8f15b6ec57794aaf212d668eff2f09e2 165 SUPERFAMILY SSF55298 14 162 1.16E-53 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMJ96_PC00358 8f15b6ec57794aaf212d668eff2f09e2 165 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 18 155 2.3E-28 T 12-10-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AMJ96_PC00358 8f15b6ec57794aaf212d668eff2f09e2 165 Gene3D G3DSA:3.30.1330.40 7 164 4.9E-59 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMJ96_CH00149 bdb6676e7b5c4bad713755d3fa2929a0 375 SMART SM00271 4 62 1.3E-30 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH00149 bdb6676e7b5c4bad713755d3fa2929a0 375 SUPERFAMILY SSF49493 116 264 1.57E-20 T 12-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMJ96_CH00149 bdb6676e7b5c4bad713755d3fa2929a0 375 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 352 9.8E-134 T 12-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AMJ96_CH00149 bdb6676e7b5c4bad713755d3fa2929a0 375 Pfam PF01556 DnaJ C terminal domain 123 336 3.7E-44 T 12-10-2018 IPR002939 Chaperone DnaJ, C-terminal AMJ96_CH00149 bdb6676e7b5c4bad713755d3fa2929a0 375 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 372 41.593 T 12-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AMJ96_CH00149 bdb6676e7b5c4bad713755d3fa2929a0 375 Pfam PF00684 DnaJ central domain 149 209 3.9E-14 T 12-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 AMJ96_CH00149 bdb6676e7b5c4bad713755d3fa2929a0 375 SUPERFAMILY SSF49493 261 347 3.53E-23 T 12-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMJ96_CH00149 bdb6676e7b5c4bad713755d3fa2929a0 375 Gene3D G3DSA:2.60.260.20 256 364 2.5E-31 T 12-10-2018 AMJ96_CH00149 bdb6676e7b5c4bad713755d3fa2929a0 375 SUPERFAMILY SSF57938 136 213 3.92E-22 T 12-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily AMJ96_CH00149 bdb6676e7b5c4bad713755d3fa2929a0 375 Pfam PF00226 DnaJ domain 5 67 1.6E-27 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH00149 bdb6676e7b5c4bad713755d3fa2929a0 375 Gene3D G3DSA:1.10.287.110 1 112 2.2E-37 T 12-10-2018 IPR036869 Chaperone J-domain superfamily AMJ96_CH00149 bdb6676e7b5c4bad713755d3fa2929a0 375 Gene3D G3DSA:2.10.230.10 149 209 2.3E-39 T 12-10-2018 AMJ96_CH00149 bdb6676e7b5c4bad713755d3fa2929a0 375 SUPERFAMILY SSF46565 1 106 3.14E-35 T 12-10-2018 IPR036869 Chaperone J-domain superfamily AMJ96_CH00149 bdb6676e7b5c4bad713755d3fa2929a0 375 PRINTS PR00625 DnaJ domain signature 25 40 1.1E-31 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH00149 bdb6676e7b5c4bad713755d3fa2929a0 375 PRINTS PR00625 DnaJ domain signature 42 62 1.1E-31 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH00149 bdb6676e7b5c4bad713755d3fa2929a0 375 PRINTS PR00625 DnaJ domain signature 62 81 1.1E-31 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH00149 bdb6676e7b5c4bad713755d3fa2929a0 375 PRINTS PR00625 DnaJ domain signature 7 25 1.1E-31 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH00149 bdb6676e7b5c4bad713755d3fa2929a0 375 Gene3D G3DSA:2.60.260.20 119 251 2.3E-39 T 12-10-2018 AMJ96_CH00149 bdb6676e7b5c4bad713755d3fa2929a0 375 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 12-10-2018 IPR018253 DnaJ domain, conserved site AMJ96_CH03378 802fa649cb9486700e8ecab1d0f65742 305 Gene3D G3DSA:3.40.190.10 91 291 1.7E-54 T 12-10-2018 AMJ96_CH03378 802fa649cb9486700e8ecab1d0f65742 305 Pfam PF03466 LysR substrate binding domain 90 293 1.4E-35 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH03378 802fa649cb9486700e8ecab1d0f65742 305 Gene3D G3DSA:1.10.10.10 3 87 3.3E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03378 802fa649cb9486700e8ecab1d0f65742 305 SUPERFAMILY SSF46785 3 112 7.04E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03378 802fa649cb9486700e8ecab1d0f65742 305 SUPERFAMILY SSF53850 91 299 6.52E-39 T 12-10-2018 AMJ96_CH03378 802fa649cb9486700e8ecab1d0f65742 305 Gene3D G3DSA:3.40.190.10 163 266 1.7E-54 T 12-10-2018 AMJ96_CH03378 802fa649cb9486700e8ecab1d0f65742 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 5.1E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH00894 ce0da4a65f0eb866bead4c8cc7cf14e1 294 Gene3D G3DSA:3.30.70.890 173 293 5.4E-28 T 12-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily AMJ96_CH00894 ce0da4a65f0eb866bead4c8cc7cf14e1 294 Pfam PF00288 GHMP kinases N terminal domain 98 153 5.3E-9 T 12-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 AMJ96_CH00894 ce0da4a65f0eb866bead4c8cc7cf14e1 294 PIRSF PIRSF010376 11 293 1.8E-82 T 12-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AMJ96_CH00894 ce0da4a65f0eb866bead4c8cc7cf14e1 294 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 12 289 31.715 T 12-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AMJ96_CH00894 ce0da4a65f0eb866bead4c8cc7cf14e1 294 SUPERFAMILY SSF54211 13 168 5.69E-36 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_CH00894 ce0da4a65f0eb866bead4c8cc7cf14e1 294 SUPERFAMILY SSF55060 172 287 3.6E-26 T 12-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily AMJ96_CH00894 ce0da4a65f0eb866bead4c8cc7cf14e1 294 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 13 273 2.6E-56 T 12-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AMJ96_CH00894 ce0da4a65f0eb866bead4c8cc7cf14e1 294 Gene3D G3DSA:3.30.230.10 4 170 8.8E-51 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMJ96_CH00894 ce0da4a65f0eb866bead4c8cc7cf14e1 294 Pfam PF08544 GHMP kinases C terminal 221 277 9.4E-8 T 12-10-2018 IPR013750 GHMP kinase, C-terminal domain AMJ96_CH02776 d5d695c523b6c1c675491ace050995ac 592 Gene3D G3DSA:1.20.210.10 18 565 5.4E-188 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02776 d5d695c523b6c1c675491ace050995ac 592 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 277 331 - T 12-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02776 d5d695c523b6c1c675491ace050995ac 592 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 32 555 1.8E-202 T 12-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 AMJ96_CH02776 d5d695c523b6c1c675491ace050995ac 592 SUPERFAMILY SSF81442 28 551 1.57E-152 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02776 d5d695c523b6c1c675491ace050995ac 592 PRINTS PR01165 Cytochrome c oxidase subunit I signature 380 398 3.3E-69 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02776 d5d695c523b6c1c675491ace050995ac 592 PRINTS PR01165 Cytochrome c oxidase subunit I signature 275 296 3.3E-69 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02776 d5d695c523b6c1c675491ace050995ac 592 PRINTS PR01165 Cytochrome c oxidase subunit I signature 345 366 3.3E-69 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02776 d5d695c523b6c1c675491ace050995ac 592 PRINTS PR01165 Cytochrome c oxidase subunit I signature 107 131 3.3E-69 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02776 d5d695c523b6c1c675491ace050995ac 592 PRINTS PR01165 Cytochrome c oxidase subunit I signature 408 427 3.3E-69 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02776 d5d695c523b6c1c675491ace050995ac 592 PRINTS PR01165 Cytochrome c oxidase subunit I signature 31 56 3.3E-69 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02776 d5d695c523b6c1c675491ace050995ac 592 PRINTS PR01165 Cytochrome c oxidase subunit I signature 79 102 3.3E-69 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02776 d5d695c523b6c1c675491ace050995ac 592 PRINTS PR01165 Cytochrome c oxidase subunit I signature 321 336 3.3E-69 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02776 d5d695c523b6c1c675491ace050995ac 592 PRINTS PR01165 Cytochrome c oxidase subunit I signature 458 479 3.3E-69 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02776 d5d695c523b6c1c675491ace050995ac 592 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 41 505 5.6E-131 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH01432 31300ceaf8d1c730aa6642b16ca4c816 134 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 1 130 3.1E-27 T 12-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 AMJ96_CH01432 31300ceaf8d1c730aa6642b16ca4c816 134 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 2 129 2.2E-23 T 12-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 AMJ96_CH01432 31300ceaf8d1c730aa6642b16ca4c816 134 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 88 4.0E-41 T 12-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 AMJ96_CH01432 31300ceaf8d1c730aa6642b16ca4c816 134 Gene3D G3DSA:3.90.470.20 1 129 1.1E-32 T 12-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMJ96_CH01432 31300ceaf8d1c730aa6642b16ca4c816 134 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 102 9.3E-17 T 12-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMJ96_CH01432 31300ceaf8d1c730aa6642b16ca4c816 134 SUPERFAMILY SSF56214 1 128 5.36E-27 T 12-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMJ96_CH01432 31300ceaf8d1c730aa6642b16ca4c816 134 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 129 23.966 T 12-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 AMJ96_PC00043 06213f6d0fc4eddeec29c0ed1d5502bc 629 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00043 06213f6d0fc4eddeec29c0ed1d5502bc 629 Pfam PF00005 ABC transporter 337 491 1.4E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00043 06213f6d0fc4eddeec29c0ed1d5502bc 629 SMART SM00382 36 242 4.5E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00043 06213f6d0fc4eddeec29c0ed1d5502bc 629 SMART SM00382 345 541 4.3E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00043 06213f6d0fc4eddeec29c0ed1d5502bc 629 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 543 577 3.4E-5 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PC00043 06213f6d0fc4eddeec29c0ed1d5502bc 629 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 244 276 1.7E-6 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PC00043 06213f6d0fc4eddeec29c0ed1d5502bc 629 SUPERFAMILY SSF52540 7 263 7.48E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00043 06213f6d0fc4eddeec29c0ed1d5502bc 629 Gene3D G3DSA:3.40.50.300 305 617 2.2E-84 T 12-10-2018 AMJ96_PC00043 06213f6d0fc4eddeec29c0ed1d5502bc 629 Gene3D G3DSA:3.40.50.300 5 300 6.8E-77 T 12-10-2018 AMJ96_PC00043 06213f6d0fc4eddeec29c0ed1d5502bc 629 ProSitePatterns PS00211 ABC transporters family signature. 464 478 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00043 06213f6d0fc4eddeec29c0ed1d5502bc 629 SUPERFAMILY SSF52540 307 563 1.18E-69 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00043 06213f6d0fc4eddeec29c0ed1d5502bc 629 Pfam PF00005 ABC transporter 28 192 3.0E-23 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH04035 e739167197ca26986e5f643ab87e38d1 309 Gene3D G3DSA:3.40.50.1220 183 309 3.0E-55 T 12-10-2018 AMJ96_CH04035 e739167197ca26986e5f643ab87e38d1 309 PIRSF PIRSF000089 1 309 7.0E-101 T 12-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 AMJ96_CH04035 e739167197ca26986e5f643ab87e38d1 309 SUPERFAMILY SSF52467 188 308 4.36E-45 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMJ96_CH04035 e739167197ca26986e5f643ab87e38d1 309 SUPERFAMILY SSF52402 3 180 2.6E-51 T 12-10-2018 AMJ96_CH04035 e739167197ca26986e5f643ab87e38d1 309 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 189 272 2.4E-34 T 12-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 AMJ96_CH04035 e739167197ca26986e5f643ab87e38d1 309 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 253 279 - T 12-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 AMJ96_CH04035 e739167197ca26986e5f643ab87e38d1 309 Gene3D G3DSA:3.40.50.620 2 182 2.8E-50 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH04035 e739167197ca26986e5f643ab87e38d1 309 Pfam PF01012 Electron transfer flavoprotein domain 4 168 5.3E-34 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMJ96_CH04035 e739167197ca26986e5f643ab87e38d1 309 SMART SM00893 3 181 1.6E-49 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMJ96_CH01713 68b2adf0c90a69118ae09c5c39d4b8c7 391 Pfam PF03144 Elongation factor Tu domain 2 222 291 4.6E-16 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMJ96_CH01713 68b2adf0c90a69118ae09c5c39d4b8c7 391 SUPERFAMILY SSF52540 6 216 6.59E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01713 68b2adf0c90a69118ae09c5c39d4b8c7 391 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 144 1.6E-15 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMJ96_CH01713 68b2adf0c90a69118ae09c5c39d4b8c7 391 SUPERFAMILY SSF50465 299 391 3.17E-35 T 12-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMJ96_CH01713 68b2adf0c90a69118ae09c5c39d4b8c7 391 Gene3D G3DSA:2.40.30.10 204 331 1.6E-52 T 12-10-2018 AMJ96_CH01713 68b2adf0c90a69118ae09c5c39d4b8c7 391 Gene3D G3DSA:3.40.50.300 1 200 2.3E-68 T 12-10-2018 AMJ96_CH01713 68b2adf0c90a69118ae09c5c39d4b8c7 391 Pfam PF00009 Elongation factor Tu GTP binding domain 10 198 1.1E-56 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01713 68b2adf0c90a69118ae09c5c39d4b8c7 391 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 391 59.599 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMJ96_CH01713 68b2adf0c90a69118ae09c5c39d4b8c7 391 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site AMJ96_CH01713 68b2adf0c90a69118ae09c5c39d4b8c7 391 PRINTS PR00315 GTP-binding elongation factor signature 73 83 3.3E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01713 68b2adf0c90a69118ae09c5c39d4b8c7 391 PRINTS PR00315 GTP-binding elongation factor signature 53 61 3.3E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01713 68b2adf0c90a69118ae09c5c39d4b8c7 391 PRINTS PR00315 GTP-binding elongation factor signature 89 100 3.3E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01713 68b2adf0c90a69118ae09c5c39d4b8c7 391 PRINTS PR00315 GTP-binding elongation factor signature 14 27 3.3E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01713 68b2adf0c90a69118ae09c5c39d4b8c7 391 PRINTS PR00315 GTP-binding elongation factor signature 126 135 3.3E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01713 68b2adf0c90a69118ae09c5c39d4b8c7 391 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 391 7.1E-221 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMJ96_CH01713 68b2adf0c90a69118ae09c5c39d4b8c7 391 Gene3D G3DSA:2.40.30.10 335 390 1.9E-26 T 12-10-2018 AMJ96_CH01713 68b2adf0c90a69118ae09c5c39d4b8c7 391 SUPERFAMILY SSF50447 200 298 1.06E-29 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMJ96_CH01713 68b2adf0c90a69118ae09c5c39d4b8c7 391 Pfam PF03143 Elongation factor Tu C-terminal domain 295 389 5.1E-33 T 12-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal AMJ96_CH01692 68b2adf0c90a69118ae09c5c39d4b8c7 391 Pfam PF03144 Elongation factor Tu domain 2 222 291 4.6E-16 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMJ96_CH01692 68b2adf0c90a69118ae09c5c39d4b8c7 391 SUPERFAMILY SSF52540 6 216 6.59E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01692 68b2adf0c90a69118ae09c5c39d4b8c7 391 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 144 1.6E-15 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMJ96_CH01692 68b2adf0c90a69118ae09c5c39d4b8c7 391 SUPERFAMILY SSF50465 299 391 3.17E-35 T 12-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMJ96_CH01692 68b2adf0c90a69118ae09c5c39d4b8c7 391 Gene3D G3DSA:2.40.30.10 204 331 1.6E-52 T 12-10-2018 AMJ96_CH01692 68b2adf0c90a69118ae09c5c39d4b8c7 391 Gene3D G3DSA:3.40.50.300 1 200 2.3E-68 T 12-10-2018 AMJ96_CH01692 68b2adf0c90a69118ae09c5c39d4b8c7 391 Pfam PF00009 Elongation factor Tu GTP binding domain 10 198 1.1E-56 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01692 68b2adf0c90a69118ae09c5c39d4b8c7 391 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 391 59.599 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMJ96_CH01692 68b2adf0c90a69118ae09c5c39d4b8c7 391 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site AMJ96_CH01692 68b2adf0c90a69118ae09c5c39d4b8c7 391 PRINTS PR00315 GTP-binding elongation factor signature 73 83 3.3E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01692 68b2adf0c90a69118ae09c5c39d4b8c7 391 PRINTS PR00315 GTP-binding elongation factor signature 53 61 3.3E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01692 68b2adf0c90a69118ae09c5c39d4b8c7 391 PRINTS PR00315 GTP-binding elongation factor signature 89 100 3.3E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01692 68b2adf0c90a69118ae09c5c39d4b8c7 391 PRINTS PR00315 GTP-binding elongation factor signature 14 27 3.3E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01692 68b2adf0c90a69118ae09c5c39d4b8c7 391 PRINTS PR00315 GTP-binding elongation factor signature 126 135 3.3E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01692 68b2adf0c90a69118ae09c5c39d4b8c7 391 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 391 7.1E-221 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMJ96_CH01692 68b2adf0c90a69118ae09c5c39d4b8c7 391 Gene3D G3DSA:2.40.30.10 335 390 1.9E-26 T 12-10-2018 AMJ96_CH01692 68b2adf0c90a69118ae09c5c39d4b8c7 391 SUPERFAMILY SSF50447 200 298 1.06E-29 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMJ96_CH01692 68b2adf0c90a69118ae09c5c39d4b8c7 391 Pfam PF03143 Elongation factor Tu C-terminal domain 295 389 5.1E-33 T 12-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal AMJ96_CH03369 a513238ed7a39a84bed479b6fefafe3e 321 Pfam PF05621 Bacterial TniB protein 63 285 1.3E-22 T 12-10-2018 IPR008868 Bacterial TniB AMJ96_CH03369 a513238ed7a39a84bed479b6fefafe3e 321 SUPERFAMILY SSF52540 41 295 3.68E-9 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00826 fcc77cc781d138673b2038ddf58b1bd8 245 SUPERFAMILY SSF75217 77 244 1.99E-45 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases AMJ96_CH00826 fcc77cc781d138673b2038ddf58b1bd8 245 Gene3D G3DSA:3.40.1280.10 77 245 2.9E-57 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMJ96_CH00826 fcc77cc781d138673b2038ddf58b1bd8 245 Gene3D G3DSA:2.40.240.20 8 76 1.0E-25 T 12-10-2018 AMJ96_CH00826 fcc77cc781d138673b2038ddf58b1bd8 245 Pfam PF04452 RNA methyltransferase 24 239 3.3E-56 T 12-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMJ96_CH00826 fcc77cc781d138673b2038ddf58b1bd8 245 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 7 243 2.1E-38 T 12-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMJ96_CH00826 fcc77cc781d138673b2038ddf58b1bd8 245 SUPERFAMILY SSF88697 6 76 5.22E-15 T 12-10-2018 IPR015947 PUA-like superfamily AMJ96_CH00826 fcc77cc781d138673b2038ddf58b1bd8 245 PIRSF PIRSF015601 6 244 1.3E-53 T 12-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 AMJ96_PB00174 911c7be9f4706da404b5dd4e60669813 509 ProSitePatterns PS00211 ABC transporters family signature. 400 414 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PB00174 911c7be9f4706da404b5dd4e60669813 509 Pfam PF00005 ABC transporter 271 427 2.6E-10 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PB00174 911c7be9f4706da404b5dd4e60669813 509 SMART SM00382 29 218 2.2E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PB00174 911c7be9f4706da404b5dd4e60669813 509 SMART SM00382 278 497 22.0 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PB00174 911c7be9f4706da404b5dd4e60669813 509 Pfam PF00005 ABC transporter 20 170 6.2E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PB00174 911c7be9f4706da404b5dd4e60669813 509 SUPERFAMILY SSF52540 4 227 1.09E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PB00174 911c7be9f4706da404b5dd4e60669813 509 Gene3D G3DSA:3.40.50.300 1 237 2.8E-54 T 12-10-2018 AMJ96_PB00174 911c7be9f4706da404b5dd4e60669813 509 Gene3D G3DSA:3.40.50.300 258 501 7.9E-34 T 12-10-2018 AMJ96_PB00174 911c7be9f4706da404b5dd4e60669813 509 SUPERFAMILY SSF52540 271 486 5.33E-32 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00317 2140a30437fc929a26b30656f3ea781c 230 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 193 205 4.3E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00317 2140a30437fc929a26b30656f3ea781c 230 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 193 4.3E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00317 2140a30437fc929a26b30656f3ea781c 230 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 177 4.3E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00317 2140a30437fc929a26b30656f3ea781c 230 Pfam PF00072 Response regulator receiver domain 27 136 9.5E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00317 2140a30437fc929a26b30656f3ea781c 230 Gene3D G3DSA:1.10.10.10 155 218 2.0E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00317 2140a30437fc929a26b30656f3ea781c 230 ProSitePatterns PS00622 LuxR-type HTH domain signature. 177 204 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00317 2140a30437fc929a26b30656f3ea781c 230 SUPERFAMILY SSF52172 26 168 2.99E-30 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PD00317 2140a30437fc929a26b30656f3ea781c 230 Pfam PF00196 Bacterial regulatory proteins, luxR family 162 215 4.5E-19 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00317 2140a30437fc929a26b30656f3ea781c 230 SMART SM00421 160 217 2.9E-18 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00317 2140a30437fc929a26b30656f3ea781c 230 SMART SM00448 25 136 9.2E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00317 2140a30437fc929a26b30656f3ea781c 230 SUPERFAMILY SSF46894 153 217 1.56E-17 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_PD00317 2140a30437fc929a26b30656f3ea781c 230 Gene3D G3DSA:3.40.50.2300 20 150 6.3E-44 T 12-10-2018 AMJ96_PD00563 992c81b11f61591ef548036460c75a42 240 SUPERFAMILY SSF52172 1 123 1.39E-18 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PD00563 992c81b11f61591ef548036460c75a42 240 Gene3D G3DSA:3.40.50.2300 1 142 1.3E-20 T 12-10-2018 AMJ96_PD00563 992c81b11f61591ef548036460c75a42 240 SMART SM00448 1 119 1.4E-5 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00563 992c81b11f61591ef548036460c75a42 240 Gene3D G3DSA:1.10.10.10 145 221 3.1E-10 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00563 992c81b11f61591ef548036460c75a42 240 Pfam PF00072 Response regulator receiver domain 3 119 1.0E-14 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00563 992c81b11f61591ef548036460c75a42 240 SMART SM00421 145 211 0.0054 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00563 992c81b11f61591ef548036460c75a42 240 SUPERFAMILY SSF46894 143 193 1.16E-8 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH01841 1047757545d8b1a4118eb249083a9857 421 Pfam PF13660 Domain of unknown function (DUF4147) 10 228 2.8E-76 T 12-10-2018 IPR025286 MOFRL-associated domain Reactome: R-HSA-70350 AMJ96_CH01841 1047757545d8b1a4118eb249083a9857 421 Pfam PF05161 MOFRL family 308 414 2.9E-36 T 12-10-2018 IPR007835 MOFRL domain Reactome: R-HSA-70350 AMJ96_CH01841 1047757545d8b1a4118eb249083a9857 421 SUPERFAMILY SSF82544 5 420 1.96E-146 T 12-10-2018 AMJ96_CH01841 1047757545d8b1a4118eb249083a9857 421 Gene3D G3DSA:3.40.1480.10 253 415 3.8E-140 T 12-10-2018 IPR037035 Glycerate kinase-like, C-terminal domain superfamily AMJ96_CH01841 1047757545d8b1a4118eb249083a9857 421 Gene3D G3DSA:3.40.50.10180 35 252 3.8E-140 T 12-10-2018 IPR038614 Glycerate kinase, N-terminal domain superfamily Reactome: R-HSA-70350 AMJ96_CH00734 a7172f0eaf3d477d4b4ed4dfe4c2e04a 279 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 67 238 7.5E-34 T 12-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 AMJ96_CH00734 a7172f0eaf3d477d4b4ed4dfe4c2e04a 279 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 70 236 4.6E-48 T 12-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 AMJ96_CH02681 d2e7373fc4e18b5a79be70b2c4d043bb 613 Pfam PF13091 PLD-like domain 231 354 1.6E-8 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AMJ96_CH02681 d2e7373fc4e18b5a79be70b2c4d043bb 613 Gene3D G3DSA:3.30.870.10 212 361 1.4E-16 T 12-10-2018 AMJ96_CH02681 d2e7373fc4e18b5a79be70b2c4d043bb 613 Gene3D G3DSA:3.30.870.10 411 547 3.1E-6 T 12-10-2018 AMJ96_CH02681 d2e7373fc4e18b5a79be70b2c4d043bb 613 SUPERFAMILY SSF56024 493 546 3.59E-5 T 12-10-2018 AMJ96_CH02681 d2e7373fc4e18b5a79be70b2c4d043bb 613 SUPERFAMILY SSF56024 208 355 5.34E-12 T 12-10-2018 AMJ96_PD00528 8d954a5a894522c1e458e8cfab17c732 623 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 23 45 4.0E-5 T 12-10-2018 AMJ96_PD00528 8d954a5a894522c1e458e8cfab17c732 623 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 560 575 4.0E-5 T 12-10-2018 AMJ96_PD00528 8d954a5a894522c1e458e8cfab17c732 623 Pfam PF05199 GMC oxidoreductase 480 610 5.2E-16 T 12-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 AMJ96_PD00528 8d954a5a894522c1e458e8cfab17c732 623 Gene3D G3DSA:3.50.50.60 524 623 6.2E-9 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00528 8d954a5a894522c1e458e8cfab17c732 623 Pfam PF00732 GMC oxidoreductase 306 385 3.0E-6 T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AMJ96_PD00528 8d954a5a894522c1e458e8cfab17c732 623 SUPERFAMILY SSF51905 21 619 5.72E-42 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00234 6b81c3cba13986b111ae71f71eb9e4fc 334 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 70 267 5.6E-20 T 12-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain AMJ96_PD00234 6b81c3cba13986b111ae71f71eb9e4fc 334 SUPERFAMILY SSF47413 10 68 3.9E-17 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PD00234 6b81c3cba13986b111ae71f71eb9e4fc 334 Gene3D G3DSA:3.40.50.2300 161 333 3.7E-32 T 12-10-2018 AMJ96_PD00234 6b81c3cba13986b111ae71f71eb9e4fc 334 SMART SM00354 10 80 4.6E-20 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00234 6b81c3cba13986b111ae71f71eb9e4fc 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 15 57 1.4E-13 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00234 6b81c3cba13986b111ae71f71eb9e4fc 334 SUPERFAMILY SSF53822 69 331 6.52E-44 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PD00234 6b81c3cba13986b111ae71f71eb9e4fc 334 Gene3D G3DSA:1.10.260.40 3 67 2.7E-20 T 12-10-2018 AMJ96_PD00234 6b81c3cba13986b111ae71f71eb9e4fc 334 Gene3D G3DSA:3.40.50.2300 68 157 1.7E-8 T 12-10-2018 AMJ96_CH00317 b3498744e3af88ce5351e843b83cedf6 424 Gene3D G3DSA:1.20.1420.20 21 402 3.0E-82 T 12-10-2018 IPR038352 Imelysin-like domain superfamily AMJ96_CH00317 b3498744e3af88ce5351e843b83cedf6 424 Pfam PF09375 Imelysin 40 395 8.6E-99 T 12-10-2018 IPR018976 Imelysin-like domain AMJ96_CH00870 ca06d19887173ed5357d8eb93c6a564c 610 SUPERFAMILY SSF118116 419 609 4.71E-57 T 12-10-2018 IPR037198 MutL, C-terminal domain superfamily AMJ96_CH00870 ca06d19887173ed5357d8eb93c6a564c 610 Gene3D G3DSA:3.30.565.10 1 210 7.9E-59 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00870 ca06d19887173ed5357d8eb93c6a564c 610 Gene3D G3DSA:3.30.1370.100 467 562 5.3E-55 T 12-10-2018 AMJ96_CH00870 ca06d19887173ed5357d8eb93c6a564c 610 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 607 27.908 T 12-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 AMJ96_CH00870 ca06d19887173ed5357d8eb93c6a564c 610 SUPERFAMILY SSF54211 194 325 2.47E-35 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_CH00870 ca06d19887173ed5357d8eb93c6a564c 610 SMART SM00853 424 567 1.3E-53 T 12-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 AMJ96_CH00870 ca06d19887173ed5357d8eb93c6a564c 610 Gene3D G3DSA:3.30.230.10 212 324 9.9E-32 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMJ96_CH00870 ca06d19887173ed5357d8eb93c6a564c 610 Gene3D G3DSA:2.30.42.20 426 604 5.3E-55 T 12-10-2018 AMJ96_CH00870 ca06d19887173ed5357d8eb93c6a564c 610 SUPERFAMILY SSF55874 2 204 4.98E-49 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00870 ca06d19887173ed5357d8eb93c6a564c 610 Pfam PF08676 MutL C terminal dimerisation domain 420 567 5.1E-48 T 12-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 AMJ96_CH00870 ca06d19887173ed5357d8eb93c6a564c 610 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 305 9.3E-90 T 12-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 AMJ96_CH00870 ca06d19887173ed5357d8eb93c6a564c 610 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 208 324 7.7E-36 T 12-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 AMJ96_CH00870 ca06d19887173ed5357d8eb93c6a564c 610 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 91 97 - T 12-10-2018 IPR014762 DNA mismatch repair, conserved site AMJ96_CH00870 ca06d19887173ed5357d8eb93c6a564c 610 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 115 2.0E-8 T 12-10-2018 AMJ96_CH00870 ca06d19887173ed5357d8eb93c6a564c 610 SMART SM01340 207 325 2.3E-55 T 12-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 AMJ96_CH03017 556bdaf1f12a21a6aa2083c3e8f98a4d 470 SUPERFAMILY SSF53244 316 456 2.79E-36 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMJ96_CH03017 556bdaf1f12a21a6aa2083c3e8f98a4d 470 SUPERFAMILY SSF53623 110 314 2.49E-52 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMJ96_CH03017 556bdaf1f12a21a6aa2083c3e8f98a4d 470 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 10 456 32.21 T 12-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMJ96_CH03017 556bdaf1f12a21a6aa2083c3e8f98a4d 470 Gene3D G3DSA:3.40.1190.10 98 316 5.1E-56 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMJ96_CH03017 556bdaf1f12a21a6aa2083c3e8f98a4d 470 Gene3D G3DSA:3.90.190.20 322 459 5.8E-35 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMJ96_CH03017 556bdaf1f12a21a6aa2083c3e8f98a4d 470 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 117 140 - T 12-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 AMJ96_CH03017 556bdaf1f12a21a6aa2083c3e8f98a4d 470 Pfam PF08245 Mur ligase middle domain 119 297 8.0E-33 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMJ96_CH03017 556bdaf1f12a21a6aa2083c3e8f98a4d 470 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 11 453 8.1E-105 T 12-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMJ96_CH03017 556bdaf1f12a21a6aa2083c3e8f98a4d 470 Gene3D G3DSA:3.40.50.720 6 97 2.1E-13 T 12-10-2018 AMJ96_CH03017 556bdaf1f12a21a6aa2083c3e8f98a4d 470 SUPERFAMILY SSF51984 6 97 4.71E-12 T 12-10-2018 AMJ96_PD00188 845ec969210991581c3b08a79ec535e0 200 Gene3D G3DSA:1.20.120.80 17 196 1.9E-28 T 12-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00188 845ec969210991581c3b08a79ec535e0 200 Pfam PF00510 Cytochrome c oxidase subunit III 25 196 2.6E-10 T 12-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00188 845ec969210991581c3b08a79ec535e0 200 SUPERFAMILY SSF81452 12 197 2.35E-32 T 12-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH01440 2162e62dd7c26e376e24695a20654041 283 Pfam PF03473 MOSC domain 139 268 2.6E-26 T 12-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 AMJ96_CH01440 2162e62dd7c26e376e24695a20654041 283 SUPERFAMILY SSF50800 2 270 2.09E-16 T 12-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily AMJ96_CH01440 2162e62dd7c26e376e24695a20654041 283 SUPERFAMILY SSF141673 3 128 1.57E-26 T 12-10-2018 AMJ96_CH01440 2162e62dd7c26e376e24695a20654041 283 Pfam PF03476 MOSC N-terminal beta barrel domain 2 113 1.9E-18 T 12-10-2018 IPR005303 MOSC, N-terminal beta barrel KEGG: 00790+2.8.1.9|MetaCyc: PWY-5963 AMJ96_CH01904 ff905aabf9e471b788d5e265a1044d40 395 PIRSF PIRSF000138 1 395 9.2E-125 T 12-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 AMJ96_CH01904 ff905aabf9e471b788d5e265a1044d40 395 Gene3D G3DSA:3.20.20.70 17 395 1.7E-121 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH01904 ff905aabf9e471b788d5e265a1044d40 395 SUPERFAMILY SSF51395 18 390 4.4E-91 T 12-10-2018 AMJ96_CH01904 ff905aabf9e471b788d5e265a1044d40 395 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 290 296 - T 12-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 AMJ96_CH01904 ff905aabf9e471b788d5e265a1044d40 395 Pfam PF01070 FMN-dependent dehydrogenase 28 393 7.9E-125 T 12-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 AMJ96_PC00126 c813667031c833597f2e75d152a90632 322 SUPERFAMILY SSF46785 12 118 3.07E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00126 c813667031c833597f2e75d152a90632 322 SUPERFAMILY SSF53850 95 303 4.96E-47 T 12-10-2018 AMJ96_PC00126 c813667031c833597f2e75d152a90632 322 Gene3D G3DSA:3.40.190.10 98 298 1.4E-60 T 12-10-2018 AMJ96_PC00126 c813667031c833597f2e75d152a90632 322 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 69 1.8E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00126 c813667031c833597f2e75d152a90632 322 Pfam PF03466 LysR substrate binding domain 94 299 2.2E-47 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PC00126 c813667031c833597f2e75d152a90632 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 9.2E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00126 c813667031c833597f2e75d152a90632 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 9.2E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00126 c813667031c833597f2e75d152a90632 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 9.2E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00126 c813667031c833597f2e75d152a90632 322 Gene3D G3DSA:1.10.10.10 9 92 3.3E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00126 c813667031c833597f2e75d152a90632 322 Gene3D G3DSA:3.40.190.10 169 272 1.4E-60 T 12-10-2018 AMJ96_CH03871 5b2e979338ed2c00d1c9ba73cdcecfbe 340 Gene3D G3DSA:3.40.50.2300 164 330 1.7E-70 T 12-10-2018 AMJ96_CH03871 5b2e979338ed2c00d1c9ba73cdcecfbe 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 9 51 4.8E-7 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03871 5b2e979338ed2c00d1c9ba73cdcecfbe 340 Gene3D G3DSA:1.10.260.40 1 61 4.3E-14 T 12-10-2018 AMJ96_CH03871 5b2e979338ed2c00d1c9ba73cdcecfbe 340 SMART SM00354 4 74 1.3E-16 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03871 5b2e979338ed2c00d1c9ba73cdcecfbe 340 SUPERFAMILY SSF53822 64 336 4.71E-77 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH03871 5b2e979338ed2c00d1c9ba73cdcecfbe 340 Pfam PF13377 Periplasmic binding protein-like domain 172 333 1.9E-36 T 12-10-2018 AMJ96_CH03871 5b2e979338ed2c00d1c9ba73cdcecfbe 340 Gene3D G3DSA:3.40.50.2300 65 325 1.7E-70 T 12-10-2018 AMJ96_CH03871 5b2e979338ed2c00d1c9ba73cdcecfbe 340 SUPERFAMILY SSF47413 4 62 5.63E-13 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PC00374 a39225d6dc29f5ab3010168406a902a6 278 Gene3D G3DSA:1.10.3720.10 2 265 6.7E-61 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00374 a39225d6dc29f5ab3010168406a902a6 278 SUPERFAMILY SSF161098 12 278 2.62E-70 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00374 a39225d6dc29f5ab3010168406a902a6 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 267 5.8E-23 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PB00106 fdcac36e9cfe1f87997263212b4c9527 265 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 209 227 4.6E-12 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMJ96_PB00106 fdcac36e9cfe1f87997263212b4c9527 265 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 11 33 4.6E-12 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMJ96_PB00106 fdcac36e9cfe1f87997263212b4c9527 265 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 229 246 4.6E-12 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMJ96_PB00106 fdcac36e9cfe1f87997263212b4c9527 265 Gene3D G3DSA:3.40.1690.10 219 263 2.0E-8 T 12-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal AMJ96_PB00106 fdcac36e9cfe1f87997263212b4c9527 265 Pfam PF01312 FlhB HrpN YscU SpaS Family 8 255 1.5E-51 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMJ96_CH00584 376c559e0dad1597d2fda80ab51840b8 1167 Gene3D G3DSA:1.10.287.130 765 864 4.7E-12 T 12-10-2018 AMJ96_CH00584 376c559e0dad1597d2fda80ab51840b8 1167 Pfam PF12860 PAS fold 651 760 2.4E-31 T 12-10-2018 AMJ96_CH00584 376c559e0dad1597d2fda80ab51840b8 1167 SUPERFAMILY SSF47384 785 866 3.73E-9 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH00584 376c559e0dad1597d2fda80ab51840b8 1167 Gene3D G3DSA:3.30.450.20 631 764 1.2E-11 T 12-10-2018 AMJ96_CH00584 376c559e0dad1597d2fda80ab51840b8 1167 SUPERFAMILY SSF55874 857 1018 1.57E-38 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00584 376c559e0dad1597d2fda80ab51840b8 1167 Gene3D G3DSA:1.20.1730.10 36 522 2.2E-11 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily AMJ96_CH00584 376c559e0dad1597d2fda80ab51840b8 1167 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 911 1019 1.7E-20 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00584 376c559e0dad1597d2fda80ab51840b8 1167 Pfam PF00512 His Kinase A (phospho-acceptor) domain 802 866 1.5E-7 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH00584 376c559e0dad1597d2fda80ab51840b8 1167 Gene3D G3DSA:3.40.50.2300 1038 1167 6.1E-16 T 12-10-2018 AMJ96_CH00584 376c559e0dad1597d2fda80ab51840b8 1167 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1004 1017 2.7E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00584 376c559e0dad1597d2fda80ab51840b8 1167 PRINTS PR00344 Bacterial sensor protein C-terminal signature 946 960 2.7E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00584 376c559e0dad1597d2fda80ab51840b8 1167 PRINTS PR00344 Bacterial sensor protein C-terminal signature 964 974 2.7E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00584 376c559e0dad1597d2fda80ab51840b8 1167 PRINTS PR00344 Bacterial sensor protein C-terminal signature 980 998 2.7E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00584 376c559e0dad1597d2fda80ab51840b8 1167 SMART SM00448 1043 1155 6.1E-10 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00584 376c559e0dad1597d2fda80ab51840b8 1167 SMART SM00388 801 866 1.1E-8 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH00584 376c559e0dad1597d2fda80ab51840b8 1167 SUPERFAMILY SSF52172 1041 1163 2.56E-19 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH00584 376c559e0dad1597d2fda80ab51840b8 1167 Pfam PF00072 Response regulator receiver domain 1045 1155 1.3E-9 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00584 376c559e0dad1597d2fda80ab51840b8 1167 Gene3D G3DSA:3.30.565.10 872 1026 6.6E-35 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00584 376c559e0dad1597d2fda80ab51840b8 1167 SUPERFAMILY SSF55785 635 754 3.35E-9 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH00584 376c559e0dad1597d2fda80ab51840b8 1167 SMART SM00387 910 1020 3.0E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH01464 12421eb4c22f317cfd689b3dd11f4762 311 Gene3D G3DSA:3.40.190.10 180 278 4.5E-43 T 12-10-2018 AMJ96_CH01464 12421eb4c22f317cfd689b3dd11f4762 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 43 5.3E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01464 12421eb4c22f317cfd689b3dd11f4762 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 53 5.3E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01464 12421eb4c22f317cfd689b3dd11f4762 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 53 64 5.3E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01464 12421eb4c22f317cfd689b3dd11f4762 311 SUPERFAMILY SSF53850 99 305 1.57E-31 T 12-10-2018 AMJ96_CH01464 12421eb4c22f317cfd689b3dd11f4762 311 Gene3D G3DSA:3.40.190.10 101 302 4.5E-43 T 12-10-2018 AMJ96_CH01464 12421eb4c22f317cfd689b3dd11f4762 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 17 75 1.5E-14 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01464 12421eb4c22f317cfd689b3dd11f4762 311 SUPERFAMILY SSF46785 12 92 3.26E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01464 12421eb4c22f317cfd689b3dd11f4762 311 Gene3D G3DSA:1.10.10.10 8 96 3.4E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01464 12421eb4c22f317cfd689b3dd11f4762 311 Pfam PF03466 LysR substrate binding domain 104 305 1.4E-19 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH01494 6d76ea61a66dc0c459597399ca5d8a4a 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 3.2E-16 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01494 6d76ea61a66dc0c459597399ca5d8a4a 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 3.2E-16 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01494 6d76ea61a66dc0c459597399ca5d8a4a 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 3.2E-16 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01494 6d76ea61a66dc0c459597399ca5d8a4a 245 SUPERFAMILY SSF51735 6 244 1.15E-86 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01494 6d76ea61a66dc0c459597399ca5d8a4a 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH01494 6d76ea61a66dc0c459597399ca5d8a4a 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 187 2.5E-6 T 12-10-2018 AMJ96_CH01494 6d76ea61a66dc0c459597399ca5d8a4a 245 Gene3D G3DSA:3.40.50.720 1 245 1.0E-89 T 12-10-2018 AMJ96_CH01494 6d76ea61a66dc0c459597399ca5d8a4a 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 3.3E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01494 6d76ea61a66dc0c459597399ca5d8a4a 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 3.3E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01494 6d76ea61a66dc0c459597399ca5d8a4a 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 3.3E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01494 6d76ea61a66dc0c459597399ca5d8a4a 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.3E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01494 6d76ea61a66dc0c459597399ca5d8a4a 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 3.3E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01494 6d76ea61a66dc0c459597399ca5d8a4a 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 3.3E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01494 6d76ea61a66dc0c459597399ca5d8a4a 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 242 3.4E-66 T 12-10-2018 AMJ96_CH01494 6d76ea61a66dc0c459597399ca5d8a4a 245 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 9 243 4.4E-101 T 12-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMJ96_CH02386 23c140ffb3cc2f738759656b8babff99 884 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 6 865 9.0E-291 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMJ96_CH02386 23c140ffb3cc2f738759656b8babff99 884 SUPERFAMILY SSF50447 451 550 6.56E-20 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMJ96_CH02386 23c140ffb3cc2f738759656b8babff99 884 PRINTS PR00980 Alanyl-tRNA synthetase signature 199 210 2.0E-31 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMJ96_CH02386 23c140ffb3cc2f738759656b8babff99 884 PRINTS PR00980 Alanyl-tRNA synthetase signature 75 86 2.0E-31 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMJ96_CH02386 23c140ffb3cc2f738759656b8babff99 884 PRINTS PR00980 Alanyl-tRNA synthetase signature 226 239 2.0E-31 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMJ96_CH02386 23c140ffb3cc2f738759656b8babff99 884 PRINTS PR00980 Alanyl-tRNA synthetase signature 296 309 2.0E-31 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMJ96_CH02386 23c140ffb3cc2f738759656b8babff99 884 PRINTS PR00980 Alanyl-tRNA synthetase signature 272 288 2.0E-31 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AMJ96_CH02386 23c140ffb3cc2f738759656b8babff99 884 SUPERFAMILY SSF55186 550 724 4.06E-49 T 12-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 AMJ96_CH02386 23c140ffb3cc2f738759656b8babff99 884 SUPERFAMILY SSF101353 246 459 6.02E-60 T 12-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 AMJ96_CH02386 23c140ffb3cc2f738759656b8babff99 884 SUPERFAMILY SSF55681 4 245 4.47E-107 T 12-10-2018 AMJ96_CH02386 23c140ffb3cc2f738759656b8babff99 884 Gene3D G3DSA:2.40.30.130 445 549 5.1E-10 T 12-10-2018 AMJ96_CH02386 23c140ffb3cc2f738759656b8babff99 884 Pfam PF01411 tRNA synthetases class II (A) 6 553 4.2E-218 T 12-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 AMJ96_CH02386 23c140ffb3cc2f738759656b8babff99 884 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 651 704 2.1E-16 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMJ96_CH02386 23c140ffb3cc2f738759656b8babff99 884 Gene3D G3DSA:3.30.54.20 622 685 1.1E-48 T 12-10-2018 AMJ96_CH02386 23c140ffb3cc2f738759656b8babff99 884 Gene3D G3DSA:3.30.980.10 561 705 1.1E-48 T 12-10-2018 AMJ96_CH02386 23c140ffb3cc2f738759656b8babff99 884 Gene3D G3DSA:3.30.930.10 2 242 3.2E-108 T 12-10-2018 AMJ96_CH02386 23c140ffb3cc2f738759656b8babff99 884 Gene3D G3DSA:3.10.310.40 773 884 4.0E-25 T 12-10-2018 AMJ96_CH02386 23c140ffb3cc2f738759656b8babff99 884 Pfam PF02272 DHHA1 domain 740 878 6.9E-21 T 12-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 AMJ96_CH02386 23c140ffb3cc2f738759656b8babff99 884 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 884 198.747 T 12-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 AMJ96_CH02386 23c140ffb3cc2f738759656b8babff99 884 SMART SM00863 651 704 2.8E-19 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMJ96_CH04250 94040c0faa7406c442155a70305d3020 251 Gene3D G3DSA:3.30.450.80 3 177 1.9E-27 T 12-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily AMJ96_CH04250 94040c0faa7406c442155a70305d3020 251 Pfam PF00196 Bacterial regulatory proteins, luxR family 189 244 2.3E-17 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH04250 94040c0faa7406c442155a70305d3020 251 Gene3D G3DSA:1.10.10.10 187 251 2.3E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH04250 94040c0faa7406c442155a70305d3020 251 SUPERFAMILY SSF46894 181 250 8.16E-19 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH04250 94040c0faa7406c442155a70305d3020 251 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 190 204 1.1E-9 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH04250 94040c0faa7406c442155a70305d3020 251 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 204 220 1.1E-9 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH04250 94040c0faa7406c442155a70305d3020 251 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 220 232 1.1E-9 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH04250 94040c0faa7406c442155a70305d3020 251 Pfam PF03472 Autoinducer binding domain 19 169 1.9E-28 T 12-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain AMJ96_CH04250 94040c0faa7406c442155a70305d3020 251 SUPERFAMILY SSF75516 8 174 3.92E-33 T 12-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily AMJ96_CH04250 94040c0faa7406c442155a70305d3020 251 SMART SM00421 187 244 1.5E-18 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH02769 8a9746c1df1063d15b48ebf2b7fb9cc6 234 Gene3D G3DSA:3.40.50.300 8 233 3.2E-60 T 12-10-2018 AMJ96_CH02769 8a9746c1df1063d15b48ebf2b7fb9cc6 234 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02769 8a9746c1df1063d15b48ebf2b7fb9cc6 234 SUPERFAMILY SSF52540 9 230 5.32E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02769 8a9746c1df1063d15b48ebf2b7fb9cc6 234 Pfam PF00005 ABC transporter 30 176 1.6E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02769 8a9746c1df1063d15b48ebf2b7fb9cc6 234 SMART SM00382 37 225 9.5E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00260 e005bcd63ed6d0ec832a89b674c4d5fa 464 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 335 2.5E-71 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMJ96_PA00260 e005bcd63ed6d0ec832a89b674c4d5fa 464 Gene3D G3DSA:3.30.470.130 4 461 6.8E-178 T 12-10-2018 AMJ96_PA00260 e005bcd63ed6d0ec832a89b674c4d5fa 464 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 167 181 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMJ96_PA00260 e005bcd63ed6d0ec832a89b674c4d5fa 464 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 299 306 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMJ96_PA00260 e005bcd63ed6d0ec832a89b674c4d5fa 464 Pfam PF00289 Biotin carboxylase, N-terminal domain 15 123 1.1E-39 T 12-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_PA00260 e005bcd63ed6d0ec832a89b674c4d5fa 464 SUPERFAMILY SSF51246 344 457 2.35E-41 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMJ96_PA00260 e005bcd63ed6d0ec832a89b674c4d5fa 464 SUPERFAMILY SSF52440 12 126 4.6E-43 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMJ96_PA00260 e005bcd63ed6d0ec832a89b674c4d5fa 464 SUPERFAMILY SSF56059 128 340 6.72E-63 T 12-10-2018 AMJ96_PA00260 e005bcd63ed6d0ec832a89b674c4d5fa 464 Pfam PF02785 Biotin carboxylase C-terminal domain 349 455 4.8E-41 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_PA00260 e005bcd63ed6d0ec832a89b674c4d5fa 464 SMART SM00878 349 454 2.9E-61 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_PA00155 428a16b75a0f708283619e9cad342fb4 233 Gene3D G3DSA:1.10.10.10 150 233 3.9E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PA00155 428a16b75a0f708283619e9cad342fb4 233 SMART SM00100 15 133 7.6E-17 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_PA00155 428a16b75a0f708283619e9cad342fb4 233 Gene3D G3DSA:2.60.120.10 1 149 2.6E-36 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PA00155 428a16b75a0f708283619e9cad342fb4 233 Pfam PF13545 Crp-like helix-turn-helix domain 154 226 9.2E-18 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00155 428a16b75a0f708283619e9cad342fb4 233 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 194 209 5.3E-6 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00155 428a16b75a0f708283619e9cad342fb4 233 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 178 194 5.3E-6 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00155 428a16b75a0f708283619e9cad342fb4 233 SUPERFAMILY SSF51206 9 147 5.63E-31 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like AMJ96_PA00155 428a16b75a0f708283619e9cad342fb4 233 SMART SM00419 172 220 1.2E-16 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00155 428a16b75a0f708283619e9cad342fb4 233 Pfam PF00027 Cyclic nucleotide-binding domain 34 121 1.7E-17 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_PA00155 428a16b75a0f708283619e9cad342fb4 233 SUPERFAMILY SSF46785 151 230 1.33E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00708 fc175785c9005b82a3f874a8b1dfb651 177 SUPERFAMILY SSF53474 4 174 1.8E-31 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH00708 fc175785c9005b82a3f874a8b1dfb651 177 Pfam PF06821 Serine hydrolase 6 170 2.5E-53 T 12-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 AMJ96_CH00708 fc175785c9005b82a3f874a8b1dfb651 177 Gene3D G3DSA:3.40.50.1820 1 176 5.8E-47 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02507 be82c7d64ff91e67dc02e91cb0ef2ad4 511 SMART SM00388 261 330 9.9E-24 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH02507 be82c7d64ff91e67dc02e91cb0ef2ad4 511 Gene3D G3DSA:1.10.287.130 227 328 1.4E-27 T 12-10-2018 AMJ96_CH02507 be82c7d64ff91e67dc02e91cb0ef2ad4 511 SUPERFAMILY SSF55874 319 487 1.7E-39 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02507 be82c7d64ff91e67dc02e91cb0ef2ad4 511 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 467 5.3E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02507 be82c7d64ff91e67dc02e91cb0ef2ad4 511 PRINTS PR00344 Bacterial sensor protein C-terminal signature 473 486 5.3E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02507 be82c7d64ff91e67dc02e91cb0ef2ad4 511 PRINTS PR00344 Bacterial sensor protein C-terminal signature 414 428 5.3E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02507 be82c7d64ff91e67dc02e91cb0ef2ad4 511 SMART SM00387 376 489 2.5E-31 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH02507 be82c7d64ff91e67dc02e91cb0ef2ad4 511 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 377 487 2.3E-22 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH02507 be82c7d64ff91e67dc02e91cb0ef2ad4 511 Pfam PF00512 His Kinase A (phospho-acceptor) domain 261 330 4.1E-21 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH02507 be82c7d64ff91e67dc02e91cb0ef2ad4 511 SUPERFAMILY SSF47384 250 331 2.75E-22 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH02507 be82c7d64ff91e67dc02e91cb0ef2ad4 511 Gene3D G3DSA:3.30.565.10 329 490 1.7E-37 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00410 9a00fa6e90dd6be1bfe56663b2f8122f 760 SMART SM00448 627 746 2.4E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00410 9a00fa6e90dd6be1bfe56663b2f8122f 760 SMART SM00388 243 308 4.7E-22 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH00410 9a00fa6e90dd6be1bfe56663b2f8122f 760 SUPERFAMILY SSF55874 297 464 6.55E-44 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00410 9a00fa6e90dd6be1bfe56663b2f8122f 760 Gene3D G3DSA:3.40.50.12740 626 760 4.9E-28 T 12-10-2018 AMJ96_CH00410 9a00fa6e90dd6be1bfe56663b2f8122f 760 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 356 463 1.3E-27 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00410 9a00fa6e90dd6be1bfe56663b2f8122f 760 SMART SM00387 355 465 7.1E-34 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00410 9a00fa6e90dd6be1bfe56663b2f8122f 760 Pfam PF00072 Response regulator receiver domain 629 746 1.1E-18 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00410 9a00fa6e90dd6be1bfe56663b2f8122f 760 Pfam PF00512 His Kinase A (phospho-acceptor) domain 243 306 8.3E-21 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH00410 9a00fa6e90dd6be1bfe56663b2f8122f 760 SUPERFAMILY SSF47384 231 309 1.9E-18 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH00410 9a00fa6e90dd6be1bfe56663b2f8122f 760 Gene3D G3DSA:3.30.565.10 307 470 2.9E-46 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00410 9a00fa6e90dd6be1bfe56663b2f8122f 760 Gene3D G3DSA:1.10.287.130 214 306 3.4E-24 T 12-10-2018 AMJ96_CH00410 9a00fa6e90dd6be1bfe56663b2f8122f 760 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 462 7.4E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00410 9a00fa6e90dd6be1bfe56663b2f8122f 760 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 405 7.4E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00410 9a00fa6e90dd6be1bfe56663b2f8122f 760 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 443 7.4E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00410 9a00fa6e90dd6be1bfe56663b2f8122f 760 SUPERFAMILY SSF52172 625 753 9.96E-28 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH02926 7b838b0e979a4aafec514ab6e667a697 154 Gene3D G3DSA:1.10.10.10 3 54 2.6E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02926 7b838b0e979a4aafec514ab6e667a697 154 SUPERFAMILY SSF46785 2 92 7.98E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02926 7b838b0e979a4aafec514ab6e667a697 154 SMART SM00344 2 111 6.7E-40 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMJ96_CH02926 7b838b0e979a4aafec514ab6e667a697 154 Gene3D G3DSA:3.30.70.920 55 137 2.8E-18 T 12-10-2018 AMJ96_CH02926 7b838b0e979a4aafec514ab6e667a697 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 18 29 3.3E-12 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH02926 7b838b0e979a4aafec514ab6e667a697 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 3.3E-12 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH02926 7b838b0e979a4aafec514ab6e667a697 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 3.3E-12 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH02926 7b838b0e979a4aafec514ab6e667a697 154 Pfam PF01037 Lrp/AsnC ligand binding domain 69 140 1.3E-15 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMJ96_CH02926 7b838b0e979a4aafec514ab6e667a697 154 Pfam PF13412 Winged helix-turn-helix DNA-binding 2 48 2.9E-19 T 12-10-2018 AMJ96_CH02926 7b838b0e979a4aafec514ab6e667a697 154 SUPERFAMILY SSF54909 63 150 1.19E-15 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH02926 7b838b0e979a4aafec514ab6e667a697 154 ProSitePatterns PS00519 AsnC-type HTH domain signature. 20 46 - T 12-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AMJ96_PA00008 0200536373d81f4bffe12b996901dfb2 314 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 73 292 1.1E-40 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PA00008 0200536373d81f4bffe12b996901dfb2 314 Gene3D G3DSA:3.40.190.10 75 292 6.3E-44 T 12-10-2018 AMJ96_PA00008 0200536373d81f4bffe12b996901dfb2 314 Gene3D G3DSA:3.40.190.10 149 256 6.3E-44 T 12-10-2018 AMJ96_PA00008 0200536373d81f4bffe12b996901dfb2 314 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 88 101 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site AMJ96_PA00008 0200536373d81f4bffe12b996901dfb2 314 SMART SM00062 63 296 1.2E-30 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PA00008 0200536373d81f4bffe12b996901dfb2 314 SUPERFAMILY SSF53850 14 293 6.79E-47 T 12-10-2018 AMJ96_CH02534 303f64f40070c9b442f8aca0362ceb70 459 SUPERFAMILY SSF56176 20 213 4.63E-56 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMJ96_CH02534 303f64f40070c9b442f8aca0362ceb70 459 ProSitePatterns PS00862 Oxygen oxidoreductases covalent FAD-binding site. 48 81 - T 12-10-2018 IPR006093 Oxygen oxidoreductase covalent FAD-binding site GO:0016491|GO:0055114 AMJ96_CH02534 303f64f40070c9b442f8aca0362ceb70 459 Pfam PF08031 Berberine and berberine like 413 456 2.6E-10 T 12-10-2018 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 AMJ96_CH02534 303f64f40070c9b442f8aca0362ceb70 459 Gene3D G3DSA:3.30.43.10 23 101 6.6E-32 T 12-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AMJ96_CH02534 303f64f40070c9b442f8aca0362ceb70 459 Gene3D G3DSA:3.40.462.20 214 417 1.3E-102 T 12-10-2018 AMJ96_CH02534 303f64f40070c9b442f8aca0362ceb70 459 Gene3D G3DSA:3.30.465.10 114 444 1.3E-102 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMJ96_CH02534 303f64f40070c9b442f8aca0362ceb70 459 Pfam PF01565 FAD binding domain 48 182 6.6E-33 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMJ96_PB00246 1449551d787951271805369b39fbc158 184 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 7 162 6.7E-52 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 AMJ96_PB00246 1449551d787951271805369b39fbc158 184 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 11 160 1.5E-53 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 AMJ96_PB00246 1449551d787951271805369b39fbc158 184 PIRSF PIRSF028301 1 174 6.0E-56 T 12-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 AMJ96_PA00009 2afb3301fbf6fc5b14801e2b7e1d0e13 336 Gene3D G3DSA:3.40.190.10 175 279 2.2E-43 T 12-10-2018 AMJ96_PA00009 2afb3301fbf6fc5b14801e2b7e1d0e13 336 SMART SM00062 88 320 7.3E-20 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PA00009 2afb3301fbf6fc5b14801e2b7e1d0e13 336 SUPERFAMILY SSF53850 35 318 3.86E-45 T 12-10-2018 AMJ96_PA00009 2afb3301fbf6fc5b14801e2b7e1d0e13 336 Gene3D G3DSA:3.40.190.10 87 309 2.2E-43 T 12-10-2018 AMJ96_PA00009 2afb3301fbf6fc5b14801e2b7e1d0e13 336 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 90 317 3.2E-39 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH02464 6edc05d336ae44d9d21bef9758f9548c 262 Gene3D G3DSA:3.40.50.720 2 261 1.2E-76 T 12-10-2018 AMJ96_CH02464 6edc05d336ae44d9d21bef9758f9548c 262 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 155 183 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH02464 6edc05d336ae44d9d21bef9758f9548c 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 5.5E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02464 6edc05d336ae44d9d21bef9758f9548c 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 93 104 5.5E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02464 6edc05d336ae44d9d21bef9758f9548c 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 5.5E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02464 6edc05d336ae44d9d21bef9758f9548c 262 SUPERFAMILY SSF51735 12 261 1.5E-75 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02464 6edc05d336ae44d9d21bef9758f9548c 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 189 206 4.3E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02464 6edc05d336ae44d9d21bef9758f9548c 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 18 35 4.3E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02464 6edc05d336ae44d9d21bef9758f9548c 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 187 4.3E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02464 6edc05d336ae44d9d21bef9758f9548c 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 4.3E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02464 6edc05d336ae44d9d21bef9758f9548c 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 93 104 4.3E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02464 6edc05d336ae44d9d21bef9758f9548c 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 4.3E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02464 6edc05d336ae44d9d21bef9758f9548c 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 23 259 6.9E-61 T 12-10-2018 AMJ96_CH00500 6c28e0320feb74578b1857d34ee533bb 124 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 116 2.2E-9 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH00500 6c28e0320feb74578b1857d34ee533bb 124 SUPERFAMILY SSF54593 1 120 2.28E-22 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH00500 6c28e0320feb74578b1857d34ee533bb 124 Gene3D G3DSA:3.10.180.10 1 121 8.4E-25 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 SUPERFAMILY SSF82714 704 789 9.02E-15 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 SUPERFAMILY SSF82693 553 649 4.97E-13 T 12-10-2018 AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 Gene3D G3DSA:3.30.70.1430 555 649 2.8E-294 T 12-10-2018 AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 SUPERFAMILY SSF82693 135 321 6.07E-21 T 12-10-2018 AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 SUPERFAMILY SSF82714 182 266 2.09E-19 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 Gene3D G3DSA:3.30.70.1320 134 325 2.8E-294 T 12-10-2018 AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 Gene3D G3DSA:3.30.70.1440 650 848 2.8E-294 T 12-10-2018 AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 SUPERFAMILY SSF82693 39 129 3.14E-20 T 12-10-2018 AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 SUPERFAMILY SSF82866 289 487 8.24E-45 T 12-10-2018 AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 SUPERFAMILY SSF82866 813 1009 3.92E-43 T 12-10-2018 AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 Gene3D G3DSA:3.30.70.1430 39 798 2.8E-294 T 12-10-2018 AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 1.6E-70 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 1.6E-70 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 1.6E-70 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 1.6E-70 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 1.6E-70 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 1.6E-70 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 1.6E-70 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 1.6E-70 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 PRINTS PR00702 Acriflavin resistance protein family signature 606 620 1.6E-70 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 Gene3D G3DSA:3.30.2090.10 178 268 2.8E-294 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 Gene3D G3DSA:3.30.2090.10 702 790 2.8E-294 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 Gene3D G3DSA:1.20.1640.10 501 1006 2.8E-294 T 12-10-2018 AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 Pfam PF00873 AcrB/AcrD/AcrF family 5 1008 9.2E-300 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH01345 369fd448cfcc8257f1bf824023c122bd 1039 Gene3D G3DSA:1.20.1640.10 9 500 2.8E-294 T 12-10-2018 AMJ96_CH03420 a6d73a718184209346529ba4cd7a5234 273 SUPERFAMILY SSF53448 4 241 5.06E-8 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03420 a6d73a718184209346529ba4cd7a5234 273 Gene3D G3DSA:3.90.550.10 1 180 5.5E-5 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH02400 441c4be8e150dffb0117137e1a46a479 301 Gene3D G3DSA:3.20.20.20 21 292 4.2E-96 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMJ96_CH02400 441c4be8e150dffb0117137e1a46a479 301 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 37 288 1.7E-91 T 12-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 AMJ96_CH02400 441c4be8e150dffb0117137e1a46a479 301 SUPERFAMILY SSF51717 25 290 1.31E-88 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMJ96_CH02400 441c4be8e150dffb0117137e1a46a479 301 Pfam PF00809 Pterin binding enzyme 38 273 2.0E-75 T 12-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMJ96_CH02400 441c4be8e150dffb0117137e1a46a479 301 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 71 84 - T 12-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMJ96_CH02400 441c4be8e150dffb0117137e1a46a479 301 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 37 52 - T 12-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMJ96_PA00250 96b267c27574aa36c14e01d023eec4e1 254 Pfam PF00005 ABC transporter 28 178 1.9E-37 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00250 96b267c27574aa36c14e01d023eec4e1 254 SUPERFAMILY SSF52540 13 248 2.85E-80 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00250 96b267c27574aa36c14e01d023eec4e1 254 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PA00250 96b267c27574aa36c14e01d023eec4e1 254 Gene3D G3DSA:3.40.50.300 8 253 4.1E-81 T 12-10-2018 AMJ96_PA00250 96b267c27574aa36c14e01d023eec4e1 254 PIRSF PIRSF039085 9 254 1.2E-108 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMJ96_PA00250 96b267c27574aa36c14e01d023eec4e1 254 SMART SM00382 37 226 1.9E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03326 a6ec2168d6a06d50b814302f876423f8 289 Pfam PF13403 Hint domain 81 216 1.2E-41 T 12-10-2018 IPR028992 Hedgehog/Intein (Hint) domain AMJ96_CH03326 a6ec2168d6a06d50b814302f876423f8 289 Gene3D G3DSA:2.170.16.10 74 128 3.2E-8 T 12-10-2018 AMJ96_CH03326 a6ec2168d6a06d50b814302f876423f8 289 SUPERFAMILY SSF51294 80 168 4.84E-14 T 12-10-2018 IPR036844 Hint domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMJ96_CH02542 452fa2e32019b215d7fbdd497678bdd9 428 Gene3D G3DSA:3.40.47.10 4 270 3.3E-53 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH02542 452fa2e32019b215d7fbdd497678bdd9 428 SUPERFAMILY SSF53901 229 423 1.57E-61 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH02542 452fa2e32019b215d7fbdd497678bdd9 428 Gene3D G3DSA:3.40.47.10 273 428 2.2E-45 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH02542 452fa2e32019b215d7fbdd497678bdd9 428 SUPERFAMILY SSF53901 15 268 8.91E-48 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH02542 452fa2e32019b215d7fbdd497678bdd9 428 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 169 185 - T 12-10-2018 IPR018201 Beta-ketoacyl synthase, active site AMJ96_CH02542 452fa2e32019b215d7fbdd497678bdd9 428 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 15 261 7.8E-31 T 12-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AMJ96_CH02542 452fa2e32019b215d7fbdd497678bdd9 428 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 270 383 4.1E-29 T 12-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AMJ96_CH02542 452fa2e32019b215d7fbdd497678bdd9 428 SMART SM00825 Beta-ketoacyl synthase 15 428 1.8E-13 T 12-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMJ96_CH01724 17ff0d4267c4db99a8cbc42e965d8a7e 79 PRINTS PR00973 Ribosomal protein S17 family signature 22 45 5.8E-11 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01724 17ff0d4267c4db99a8cbc42e965d8a7e 79 PRINTS PR00973 Ribosomal protein S17 family signature 54 64 5.8E-11 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01724 17ff0d4267c4db99a8cbc42e965d8a7e 79 PRINTS PR00973 Ribosomal protein S17 family signature 64 71 5.8E-11 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01724 17ff0d4267c4db99a8cbc42e965d8a7e 79 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 1 74 7.0E-36 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01724 17ff0d4267c4db99a8cbc42e965d8a7e 79 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 3 73 5.5E-35 T 12-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01724 17ff0d4267c4db99a8cbc42e965d8a7e 79 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 3 77 22.898 T 12-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01724 17ff0d4267c4db99a8cbc42e965d8a7e 79 SUPERFAMILY SSF50249 3 75 1.88E-30 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH01724 17ff0d4267c4db99a8cbc42e965d8a7e 79 Pfam PF00366 Ribosomal protein S17 8 74 4.7E-32 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01724 17ff0d4267c4db99a8cbc42e965d8a7e 79 Gene3D G3DSA:2.40.50.140 1 79 9.1E-34 T 12-10-2018 AMJ96_PC00093 affba2fdde32ca5477dad242eb02aa71 234 SUPERFAMILY SSF161098 13 207 2.09E-33 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00093 affba2fdde32ca5477dad242eb02aa71 234 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 30 218 8.8E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00093 affba2fdde32ca5477dad242eb02aa71 234 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 11 116 4.3E-19 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_PC00093 affba2fdde32ca5477dad242eb02aa71 234 Gene3D G3DSA:1.10.3720.10 1 224 2.4E-42 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02024 5a295aa3e3ec1ca5e5807ae4e1d27727 297 Pfam PF03466 LysR substrate binding domain 89 293 1.7E-30 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH02024 5a295aa3e3ec1ca5e5807ae4e1d27727 297 Gene3D G3DSA:3.40.190.10 163 268 2.1E-62 T 12-10-2018 AMJ96_CH02024 5a295aa3e3ec1ca5e5807ae4e1d27727 297 Gene3D G3DSA:1.10.10.10 1 89 7.2E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02024 5a295aa3e3ec1ca5e5807ae4e1d27727 297 Gene3D G3DSA:3.40.190.10 90 290 2.1E-62 T 12-10-2018 AMJ96_CH02024 5a295aa3e3ec1ca5e5807ae4e1d27727 297 SUPERFAMILY SSF46785 1 108 1.15E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02024 5a295aa3e3ec1ca5e5807ae4e1d27727 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 3.0E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02024 5a295aa3e3ec1ca5e5807ae4e1d27727 297 SUPERFAMILY SSF53850 90 294 2.41E-33 T 12-10-2018 AMJ96_CH03620 a95ea0291eb2b7a2fe57ca87ebb20568 491 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 322 341 1.5E-45 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03620 a95ea0291eb2b7a2fe57ca87ebb20568 491 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 164 188 1.5E-45 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03620 a95ea0291eb2b7a2fe57ca87ebb20568 491 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 134 153 1.5E-45 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03620 a95ea0291eb2b7a2fe57ca87ebb20568 491 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 374 400 1.5E-45 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03620 a95ea0291eb2b7a2fe57ca87ebb20568 491 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 234 258 1.5E-45 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03620 a95ea0291eb2b7a2fe57ca87ebb20568 491 Pfam PF00361 Proton-conducting membrane transporter 128 416 3.0E-78 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03620 a95ea0291eb2b7a2fe57ca87ebb20568 491 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 6 483 3.2E-192 T 12-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01406 31da358e7281d77406f63b100105bb4f 251 Gene3D G3DSA:3.40.50.2300 33 164 5.2E-8 T 12-10-2018 AMJ96_CH01406 31da358e7281d77406f63b100105bb4f 251 ProSitePatterns PS00622 LuxR-type HTH domain signature. 201 228 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH01406 31da358e7281d77406f63b100105bb4f 251 SUPERFAMILY SSF46894 179 242 2.28E-15 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH01406 31da358e7281d77406f63b100105bb4f 251 Gene3D G3DSA:1.10.10.10 176 246 2.6E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01406 31da358e7281d77406f63b100105bb4f 251 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 187 201 7.9E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH01406 31da358e7281d77406f63b100105bb4f 251 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 201 217 7.9E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH01406 31da358e7281d77406f63b100105bb4f 251 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 217 229 7.9E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH01406 31da358e7281d77406f63b100105bb4f 251 SMART SM00421 184 241 1.0E-14 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH01406 31da358e7281d77406f63b100105bb4f 251 SUPERFAMILY SSF52172 34 152 1.61E-7 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH01406 31da358e7281d77406f63b100105bb4f 251 Pfam PF00196 Bacterial regulatory proteins, luxR family 187 238 7.7E-16 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH03312 3c7ed30a98648a172481dffbab196fa7 464 Pfam PF14403 Circularly permuted ATP-grasp type 2 64 440 1.4E-160 T 12-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 AMJ96_CH03312 3c7ed30a98648a172481dffbab196fa7 464 PIRSF PIRSF005522 1 464 1.3E-218 T 12-10-2018 IPR016450 Uncharacterised conserved protein UCP005522 AMJ96_CH03312 3c7ed30a98648a172481dffbab196fa7 464 Gene3D G3DSA:3.40.50.11290 203 300 1.5E-38 T 12-10-2018 AMJ96_CH03312 3c7ed30a98648a172481dffbab196fa7 464 SUPERFAMILY SSF56059 8 455 1.06E-67 T 12-10-2018 AMJ96_CH03312 3c7ed30a98648a172481dffbab196fa7 464 Gene3D G3DSA:3.30.1490.270 337 397 4.5E-27 T 12-10-2018 AMJ96_CH01221 0f77a0e22619cbaf0bb811bd4c352102 506 Gene3D G3DSA:3.40.50.300 305 501 3.1E-31 T 12-10-2018 AMJ96_CH01221 0f77a0e22619cbaf0bb811bd4c352102 506 Pfam PF00005 ABC transporter 323 445 4.9E-10 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH01221 0f77a0e22619cbaf0bb811bd4c352102 506 SMART SM00382 27 198 3.5E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01221 0f77a0e22619cbaf0bb811bd4c352102 506 SMART SM00382 322 490 1.1E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01221 0f77a0e22619cbaf0bb811bd4c352102 506 Gene3D G3DSA:3.40.50.300 1 240 4.9E-46 T 12-10-2018 AMJ96_CH01221 0f77a0e22619cbaf0bb811bd4c352102 506 SUPERFAMILY SSF52540 3 197 7.79E-38 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01221 0f77a0e22619cbaf0bb811bd4c352102 506 Pfam PF00005 ABC transporter 19 152 2.4E-21 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH01221 0f77a0e22619cbaf0bb811bd4c352102 506 ProSitePatterns PS00211 ABC transporters family signature. 124 138 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH01221 0f77a0e22619cbaf0bb811bd4c352102 506 SUPERFAMILY SSF52540 293 503 5.26E-30 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00298 30c8ff473a17b969494bacd27ca34e0b 353 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 31 337 1.2E-59 T 12-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 AMJ96_CH00298 30c8ff473a17b969494bacd27ca34e0b 353 Gene3D G3DSA:3.40.630.10 2 338 1.2E-59 T 12-10-2018 AMJ96_CH00298 30c8ff473a17b969494bacd27ca34e0b 353 SUPERFAMILY SSF53187 18 339 5.62E-39 T 12-10-2018 AMJ96_CH02656 0335a9b80004b0d1edf3299fbf6c8a39 422 Pfam PF01566 Natural resistance-associated macrophage protein 34 396 1.2E-78 T 12-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 AMJ96_CH00427 40e83998cd9f8740f9ef22bd8100f0c6 784 SMART SM00304 424 476 0.012 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH00427 40e83998cd9f8740f9ef22bd8100f0c6 784 SMART SM00304 343 396 1.6E-4 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH00427 40e83998cd9f8740f9ef22bd8100f0c6 784 SMART SM00283 477 724 2.2E-90 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH00427 40e83998cd9f8740f9ef22bd8100f0c6 784 SUPERFAMILY SSF158472 345 393 4.05E-5 T 12-10-2018 AMJ96_CH00427 40e83998cd9f8740f9ef22bd8100f0c6 784 SUPERFAMILY SSF58104 444 725 2.62E-68 T 12-10-2018 AMJ96_CH00427 40e83998cd9f8740f9ef22bd8100f0c6 784 Gene3D G3DSA:1.10.287.950 424 726 4.1E-75 T 12-10-2018 AMJ96_CH00427 40e83998cd9f8740f9ef22bd8100f0c6 784 Gene3D G3DSA:1.20.1480.50 310 402 1.0E-10 T 12-10-2018 AMJ96_CH00427 40e83998cd9f8740f9ef22bd8100f0c6 784 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 536 692 9.7E-49 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH00427 40e83998cd9f8740f9ef22bd8100f0c6 784 Gene3D G3DSA:3.30.450.20 55 309 2.6E-40 T 12-10-2018 AMJ96_CH00427 40e83998cd9f8740f9ef22bd8100f0c6 784 Gene3D G3DSA:3.30.450.20 65 212 2.6E-40 T 12-10-2018 AMJ96_CH01003 982a8e3802e015cfec183ca13761e47b 461 Gene3D G3DSA:1.20.1250.20 259 455 8.9E-19 T 12-10-2018 AMJ96_CH01003 982a8e3802e015cfec183ca13761e47b 461 Pfam PF07690 Major Facilitator Superfamily 26 412 2.0E-45 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH01003 982a8e3802e015cfec183ca13761e47b 461 Gene3D G3DSA:1.20.1720.10 23 251 2.4E-35 T 12-10-2018 AMJ96_CH01003 982a8e3802e015cfec183ca13761e47b 461 SUPERFAMILY SSF103473 14 447 4.84E-58 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH01003 982a8e3802e015cfec183ca13761e47b 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 116 136 2.8E-8 T 12-10-2018 AMJ96_CH01003 982a8e3802e015cfec183ca13761e47b 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 146 170 2.8E-8 T 12-10-2018 AMJ96_CH01003 982a8e3802e015cfec183ca13761e47b 461 PRINTS PR01036 Tetracycline resistance protein TetB signature 25 49 2.8E-8 T 12-10-2018 AMJ96_CH01461 591f054da2ca2079e993c878d80f7a95 625 SUPERFAMILY SSF52540 353 596 1.22E-91 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01461 591f054da2ca2079e993c878d80f7a95 625 Pfam PF00664 ABC transporter transmembrane region 42 315 2.1E-30 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_CH01461 591f054da2ca2079e993c878d80f7a95 625 Gene3D G3DSA:1.20.1560.10 22 350 9.7E-108 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH01461 591f054da2ca2079e993c878d80f7a95 625 SMART SM00382 386 572 1.2E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01461 591f054da2ca2079e993c878d80f7a95 625 Gene3D G3DSA:3.40.50.300 351 613 1.1E-96 T 12-10-2018 AMJ96_CH01461 591f054da2ca2079e993c878d80f7a95 625 ProSitePatterns PS00211 ABC transporters family signature. 498 512 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH01461 591f054da2ca2079e993c878d80f7a95 625 Pfam PF00005 ABC transporter 377 526 4.3E-36 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH01461 591f054da2ca2079e993c878d80f7a95 625 SUPERFAMILY SSF90123 19 344 1.2E-54 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH01938 055ff39a7ec7288f870ee5bcd6ce526d 405 Pfam PF00155 Aminotransferase class I and II 31 382 2.7E-51 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_CH01938 055ff39a7ec7288f870ee5bcd6ce526d 405 Gene3D G3DSA:3.40.640.10 63 287 2.7E-120 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH01938 055ff39a7ec7288f870ee5bcd6ce526d 405 Gene3D G3DSA:3.90.1150.10 288 385 2.7E-120 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH01938 055ff39a7ec7288f870ee5bcd6ce526d 405 SUPERFAMILY SSF53383 3 388 7.56E-108 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH01938 055ff39a7ec7288f870ee5bcd6ce526d 405 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 235 248 - T 12-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AMJ96_CH03189 5508cb7e7b87b395821a39f531448236 103 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 8 97 21.085 T 12-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS AMJ96_CH03189 5508cb7e7b87b395821a39f531448236 103 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 20 98 1.6E-23 T 12-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 AMJ96_CH03189 5508cb7e7b87b395821a39f531448236 103 SUPERFAMILY SSF54736 17 101 9.42E-24 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMJ96_CH03189 5508cb7e7b87b395821a39f531448236 103 Gene3D G3DSA:3.30.1390.10 20 103 2.1E-31 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMJ96_CH00068 7e6d40ef942b3fda9ed464bf936df0a6 260 Pfam PF00196 Bacterial regulatory proteins, luxR family 188 241 1.3E-21 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00068 7e6d40ef942b3fda9ed464bf936df0a6 260 ProSitePatterns PS00622 LuxR-type HTH domain signature. 203 230 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00068 7e6d40ef942b3fda9ed464bf936df0a6 260 SUPERFAMILY SSF46894 179 245 4.76E-20 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH00068 7e6d40ef942b3fda9ed464bf936df0a6 260 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 219 231 7.6E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00068 7e6d40ef942b3fda9ed464bf936df0a6 260 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 203 219 7.6E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00068 7e6d40ef942b3fda9ed464bf936df0a6 260 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 189 203 7.6E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00068 7e6d40ef942b3fda9ed464bf936df0a6 260 Gene3D G3DSA:1.10.10.10 121 253 2.3E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00068 7e6d40ef942b3fda9ed464bf936df0a6 260 SMART SM00421 186 243 3.3E-23 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00488 ecd17e849911d887f47f70ec30ee5ca0 309 SMART SM00893 3 181 1.8E-48 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMJ96_PD00488 ecd17e849911d887f47f70ec30ee5ca0 309 Gene3D G3DSA:3.40.50.1220 183 309 4.2E-55 T 12-10-2018 AMJ96_PD00488 ecd17e849911d887f47f70ec30ee5ca0 309 SUPERFAMILY SSF52402 3 180 2.85E-51 T 12-10-2018 AMJ96_PD00488 ecd17e849911d887f47f70ec30ee5ca0 309 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 253 279 - T 12-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 AMJ96_PD00488 ecd17e849911d887f47f70ec30ee5ca0 309 SUPERFAMILY SSF52467 188 308 3.82E-45 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMJ96_PD00488 ecd17e849911d887f47f70ec30ee5ca0 309 Pfam PF01012 Electron transfer flavoprotein domain 4 167 7.4E-34 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMJ96_PD00488 ecd17e849911d887f47f70ec30ee5ca0 309 PIRSF PIRSF000089 1 309 1.1E-100 T 12-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 AMJ96_PD00488 ecd17e849911d887f47f70ec30ee5ca0 309 Gene3D G3DSA:3.40.50.620 2 182 4.4E-51 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_PD00488 ecd17e849911d887f47f70ec30ee5ca0 309 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 189 272 3.5E-34 T 12-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 AMJ96_CH02139 a9b04e324cf9b4832729b80a6162967a 326 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 95 7.1E-10 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_CH02139 a9b04e324cf9b4832729b80a6162967a 326 Gene3D G3DSA:3.90.180.10 14 320 1.5E-111 T 12-10-2018 AMJ96_CH02139 a9b04e324cf9b4832729b80a6162967a 326 SUPERFAMILY SSF51735 113 272 3.94E-49 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02139 a9b04e324cf9b4832729b80a6162967a 326 SUPERFAMILY SSF50129 4 146 8.11E-35 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_CH02139 a9b04e324cf9b4832729b80a6162967a 326 Pfam PF00107 Zinc-binding dehydrogenase 153 258 2.5E-31 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_CH02139 a9b04e324cf9b4832729b80a6162967a 326 SMART SM00829 13 324 5.7E-33 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_CH02139 a9b04e324cf9b4832729b80a6162967a 326 Gene3D G3DSA:3.40.50.720 125 270 1.5E-111 T 12-10-2018 AMJ96_CH03650 e84098c69cb09eb461f304b493606c53 340 Gene3D G3DSA:3.40.190.10 130 334 5.2E-78 T 12-10-2018 AMJ96_CH03650 e84098c69cb09eb461f304b493606c53 340 SUPERFAMILY SSF53850 27 336 4.83E-57 T 12-10-2018 AMJ96_CH03650 e84098c69cb09eb461f304b493606c53 340 Gene3D G3DSA:3.40.190.10 41 305 5.2E-78 T 12-10-2018 AMJ96_CH03650 e84098c69cb09eb461f304b493606c53 340 Pfam PF13416 Bacterial extracellular solute-binding protein 44 300 1.2E-27 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PD00263 955c2e152b92da57c6622a3de26f33ee 361 Gene3D G3DSA:3.40.50.300 17 253 4.1E-78 T 12-10-2018 AMJ96_PD00263 955c2e152b92da57c6622a3de26f33ee 361 Gene3D G3DSA:3.30.70.260 254 356 7.4E-8 T 12-10-2018 AMJ96_PD00263 955c2e152b92da57c6622a3de26f33ee 361 SUPERFAMILY SSF55021 263 357 2.98E-10 T 12-10-2018 AMJ96_PD00263 955c2e152b92da57c6622a3de26f33ee 361 Pfam PF00005 ABC transporter 37 185 1.3E-37 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00263 955c2e152b92da57c6622a3de26f33ee 361 SUPERFAMILY SSF52540 22 255 3.8E-81 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00263 955c2e152b92da57c6622a3de26f33ee 361 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00263 955c2e152b92da57c6622a3de26f33ee 361 SMART SM00930 278 354 6.3E-10 T 12-10-2018 IPR018449 NIL domain AMJ96_PD00263 955c2e152b92da57c6622a3de26f33ee 361 Pfam PF09383 NIL domain 281 353 2.6E-9 T 12-10-2018 IPR018449 NIL domain AMJ96_PD00263 955c2e152b92da57c6622a3de26f33ee 361 SMART SM00382 46 234 1.0E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00366 9286925b02ca36137c75486f7c57081a 522 SUPERFAMILY SSF48557 4 493 1.73E-108 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMJ96_CH00366 9286925b02ca36137c75486f7c57081a 522 Pfam PF00221 Aromatic amino acid lyase 16 463 1.9E-89 T 12-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 AMJ96_CH00366 9286925b02ca36137c75486f7c57081a 522 Gene3D G3DSA:1.20.200.10 201 501 8.3E-42 T 12-10-2018 AMJ96_CH00366 9286925b02ca36137c75486f7c57081a 522 Gene3D G3DSA:1.10.275.10 1 199 1.1E-50 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal AMJ96_CH01326 a495ba69d88d1e0b104e61aa0b88bcb7 223 Gene3D G3DSA:3.40.50.2300 1 118 2.0E-40 T 12-10-2018 AMJ96_CH01326 a495ba69d88d1e0b104e61aa0b88bcb7 223 SUPERFAMILY SSF52172 1 118 1.85E-38 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH01326 a495ba69d88d1e0b104e61aa0b88bcb7 223 Pfam PF00072 Response regulator receiver domain 3 112 4.0E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01326 a495ba69d88d1e0b104e61aa0b88bcb7 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 216 1.2E-23 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH01326 a495ba69d88d1e0b104e61aa0b88bcb7 223 SUPERFAMILY SSF46894 119 217 2.1E-27 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH01326 a495ba69d88d1e0b104e61aa0b88bcb7 223 SMART SM00862 145 216 1.9E-24 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH01326 a495ba69d88d1e0b104e61aa0b88bcb7 223 SMART SM00448 1 112 6.1E-40 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01326 a495ba69d88d1e0b104e61aa0b88bcb7 223 Gene3D G3DSA:1.10.10.10 119 222 8.0E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH04053 eaaeed83372191e587b648d6d7b175a4 308 Gene3D G3DSA:3.40.50.720 5 180 7.3E-60 T 12-10-2018 AMJ96_CH04053 eaaeed83372191e587b648d6d7b175a4 308 Gene3D G3DSA:1.10.3660.10 181 288 6.9E-35 T 12-10-2018 AMJ96_CH04053 eaaeed83372191e587b648d6d7b175a4 308 Pfam PF02153 Prephenate dehydrogenase 20 277 9.0E-77 T 12-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 AMJ96_CH04053 eaaeed83372191e587b648d6d7b175a4 308 SUPERFAMILY SSF48179 177 287 4.53E-33 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_CH04053 eaaeed83372191e587b648d6d7b175a4 308 SUPERFAMILY SSF51735 7 173 6.21E-53 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00597 a0a750e3bb2d56774c53077c8ecaf84f 347 Pfam PF00589 Phage integrase family 155 316 2.7E-28 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMJ96_CH00597 a0a750e3bb2d56774c53077c8ecaf84f 347 Gene3D G3DSA:1.10.443.10 154 342 5.2E-38 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMJ96_CH00597 a0a750e3bb2d56774c53077c8ecaf84f 347 SUPERFAMILY SSF56349 78 322 6.47E-47 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMJ96_CH04105 33f504d5f372029df2568b97ca7ce9f9 518 SUPERFAMILY SSF52833 3 84 1.43E-6 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH04105 33f504d5f372029df2568b97ca7ce9f9 518 Gene3D G3DSA:1.20.1440.230 424 514 3.4E-22 T 12-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH04105 33f504d5f372029df2568b97ca7ce9f9 518 SUPERFAMILY SSF142984 341 421 6.8E-19 T 12-10-2018 AMJ96_CH04105 33f504d5f372029df2568b97ca7ce9f9 518 SMART SM00928 426 471 2.0E-17 T 12-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH04105 33f504d5f372029df2568b97ca7ce9f9 518 Gene3D G3DSA:3.40.50.11540 150 328 5.1E-71 T 12-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH04105 33f504d5f372029df2568b97ca7ce9f9 518 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 439 450 - T 12-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH04105 33f504d5f372029df2568b97ca7ce9f9 518 Gene3D G3DSA:3.10.20.600 329 423 9.4E-21 T 12-10-2018 AMJ96_CH04105 33f504d5f372029df2568b97ca7ce9f9 518 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 428 508 1.8E-28 T 12-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH04105 33f504d5f372029df2568b97ca7ce9f9 518 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 145 316 2.3E-45 T 12-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH04105 33f504d5f372029df2568b97ca7ce9f9 518 SUPERFAMILY SSF142019 97 337 1.96E-86 T 12-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH04105 33f504d5f372029df2568b97ca7ce9f9 518 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 264 279 - T 12-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH04105 33f504d5f372029df2568b97ca7ce9f9 518 SUPERFAMILY SSF140490 423 509 3.66E-27 T 12-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_PC00039 3bbdd8317ce80c1ef7f85f2c5188bb83 402 Gene3D G3DSA:3.40.50.2000 203 367 1.8E-16 T 12-10-2018 AMJ96_PC00039 3bbdd8317ce80c1ef7f85f2c5188bb83 402 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 225 360 5.8E-8 T 12-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 AMJ96_PC00039 3bbdd8317ce80c1ef7f85f2c5188bb83 402 PIRSF PIRSF017085 1 399 3.0E-163 T 12-10-2018 IPR016683 Glycosyl transferase, family 28, RedA, predicted AMJ96_PC00039 3bbdd8317ce80c1ef7f85f2c5188bb83 402 SUPERFAMILY SSF53756 9 360 4.32E-14 T 12-10-2018 AMJ96_CH01757 d3ed91ba04fa4a9eb43298e61587beb4 187 Gene3D G3DSA:3.40.50.450 1 166 2.7E-37 T 12-10-2018 AMJ96_CH01757 d3ed91ba04fa4a9eb43298e61587beb4 187 SUPERFAMILY SSF52309 1 162 1.65E-36 T 12-10-2018 AMJ96_CH01757 d3ed91ba04fa4a9eb43298e61587beb4 187 Pfam PF05014 Nucleoside 2-deoxyribosyltransferase 4 146 1.4E-37 T 12-10-2018 IPR007710 Nucleoside 2-deoxyribosyltransferase Reactome: R-HSA-74259 AMJ96_CH03754 673207e56520f2c6c8e10f4b55ed17f4 62 Gene3D G3DSA:3.30.160.160 1 48 1.0E-25 T 12-10-2018 AMJ96_CH03754 673207e56520f2c6c8e10f4b55ed17f4 62 SUPERFAMILY SSF160113 1 58 2.35E-20 T 12-10-2018 IPR036913 YegP-like superfamily AMJ96_CH03754 673207e56520f2c6c8e10f4b55ed17f4 62 Pfam PF07411 Domain of unknown function (DUF1508) 9 56 3.0E-23 T 12-10-2018 IPR010879 Domain of unknown function DUF1508 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 222 239 - T 12-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 147 157 - T 12-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 Gene3D G3DSA:3.40.50.740 279 347 1.2E-18 T 12-10-2018 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 Pfam PF12838 4Fe-4S dicluster domain 147 202 1.0E-6 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 Pfam PF00384 Molybdopterin oxidoreductase 274 407 1.1E-11 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 Pfam PF00384 Molybdopterin oxidoreductase 484 674 1.6E-20 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 Gene3D G3DSA:3.40.228.10 348 439 1.2E-18 T 12-10-2018 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 Gene3D G3DSA:3.40.50.740 497 716 4.6E-48 T 12-10-2018 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 SMART SM00929 83 123 1.1E-20 T 12-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 PIRSF PIRSF036643 1 725 6.3E-160 T 12-10-2018 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 PIRSF PIRSF036643 736 837 5.4E-9 T 12-10-2018 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 SUPERFAMILY SSF54862 75 213 1.34E-36 T 12-10-2018 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 Pfam PF01568 Molydopterin dinucleotide binding domain 745 831 5.1E-13 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 SUPERFAMILY SSF54292 1 74 5.0E-20 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 83 121 2.8E-17 T 12-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 Gene3D G3DSA:2.20.25.90 217 271 1.4E-17 T 12-10-2018 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 Gene3D G3DSA:3.10.20.740 1 123 8.5E-45 T 12-10-2018 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 672 3.4E-147 T 12-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 2 76 1.2E-19 T 12-10-2018 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 Gene3D G3DSA:2.40.40.20 741 849 1.5E-15 T 12-10-2018 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 12-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 SMART SM00926 217 271 2.9E-13 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 188 199 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 219 270 4.8E-15 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 Gene3D G3DSA:3.30.70.20 130 205 1.7E-16 T 12-10-2018 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 SUPERFAMILY SSF53706 215 724 5.1E-98 T 12-10-2018 AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 SUPERFAMILY SSF50692 734 844 3.52E-20 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMJ96_CH03628 42c82e062258b4f210857114b5c42a40 859 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 98 110 - T 12-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH02804 c122cfb7bb2ce765724a8af6c6e6853c 401 SUPERFAMILY SSF55424 303 397 6.73E-19 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMJ96_CH02804 c122cfb7bb2ce765724a8af6c6e6853c 401 Gene3D G3DSA:3.30.390.30 309 400 2.2E-18 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMJ96_CH02804 c122cfb7bb2ce765724a8af6c6e6853c 401 Gene3D G3DSA:3.50.50.60 110 228 7.9E-90 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02804 c122cfb7bb2ce765724a8af6c6e6853c 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 97 115 2.3E-27 T 12-10-2018 AMJ96_CH02804 c122cfb7bb2ce765724a8af6c6e6853c 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 140 158 2.3E-27 T 12-10-2018 AMJ96_CH02804 c122cfb7bb2ce765724a8af6c6e6853c 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 221 237 2.3E-27 T 12-10-2018 AMJ96_CH02804 c122cfb7bb2ce765724a8af6c6e6853c 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 246 268 2.3E-27 T 12-10-2018 AMJ96_CH02804 c122cfb7bb2ce765724a8af6c6e6853c 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 2.3E-27 T 12-10-2018 AMJ96_CH02804 c122cfb7bb2ce765724a8af6c6e6853c 401 SUPERFAMILY SSF51905 4 324 1.08E-42 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02804 c122cfb7bb2ce765724a8af6c6e6853c 401 Pfam PF14759 Reductase C-terminal 309 395 5.8E-20 T 12-10-2018 IPR028202 Reductase, C-terminal AMJ96_CH02804 c122cfb7bb2ce765724a8af6c6e6853c 401 Gene3D G3DSA:3.50.50.60 4 298 7.9E-90 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02804 c122cfb7bb2ce765724a8af6c6e6853c 401 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 290 6.3E-63 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_CH02804 c122cfb7bb2ce765724a8af6c6e6853c 401 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 136 160 5.4E-11 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_CH02804 c122cfb7bb2ce765724a8af6c6e6853c 401 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 98 106 5.4E-11 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_CH02804 c122cfb7bb2ce765724a8af6c6e6853c 401 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 3 25 5.4E-11 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_CH02804 c122cfb7bb2ce765724a8af6c6e6853c 401 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 256 274 5.4E-11 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_PD00017 100de277dc7a345da389d860efc78ef5 399 Gene3D G3DSA:3.40.47.10 14 274 1.7E-124 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_PD00017 100de277dc7a345da389d860efc78ef5 399 SUPERFAMILY SSF53901 14 268 2.51E-64 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_PD00017 100de277dc7a345da389d860efc78ef5 399 Pfam PF00108 Thiolase, N-terminal domain 14 260 5.8E-68 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AMJ96_PD00017 100de277dc7a345da389d860efc78ef5 399 Pfam PF02803 Thiolase, C-terminal domain 276 394 2.8E-29 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMJ96_PD00017 100de277dc7a345da389d860efc78ef5 399 PIRSF PIRSF000429 8 397 3.9E-118 T 12-10-2018 IPR002155 Thiolase GO:0016747 AMJ96_PD00017 100de277dc7a345da389d860efc78ef5 399 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 15 394 9.5E-117 T 12-10-2018 IPR002155 Thiolase GO:0016747 AMJ96_PD00017 100de277dc7a345da389d860efc78ef5 399 Gene3D G3DSA:3.40.47.10 133 392 1.7E-124 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_PD00017 100de277dc7a345da389d860efc78ef5 399 SUPERFAMILY SSF53901 274 389 2.3E-25 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_PD00017 100de277dc7a345da389d860efc78ef5 399 ProSitePatterns PS00737 Thiolases signature 2. 338 354 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 AMJ96_CH00322 a85b36e010c91c07f89a20d1c4eb0d99 230 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 76 4.4E-12 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMJ96_CH00322 a85b36e010c91c07f89a20d1c4eb0d99 230 SUPERFAMILY SSF47616 81 227 2.42E-26 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMJ96_CH00322 a85b36e010c91c07f89a20d1c4eb0d99 230 Gene3D G3DSA:3.40.30.10 4 230 4.4E-94 T 12-10-2018 AMJ96_CH00322 a85b36e010c91c07f89a20d1c4eb0d99 230 Gene3D G3DSA:1.20.1050.10 83 205 4.4E-94 T 12-10-2018 AMJ96_CH00322 a85b36e010c91c07f89a20d1c4eb0d99 230 SUPERFAMILY SSF52833 1 104 4.84E-17 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH00322 a85b36e010c91c07f89a20d1c4eb0d99 230 Pfam PF00043 Glutathione S-transferase, C-terminal domain 146 206 1.9E-7 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMJ96_CH03787 9ebebb1f24bb7606b895a0e718732488 479 SUPERFAMILY SSF51621 3 340 1.15E-88 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMJ96_CH03787 9ebebb1f24bb7606b895a0e718732488 479 Pfam PF00224 Pyruvate kinase, barrel domain 5 335 4.2E-108 T 12-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMJ96_CH03787 9ebebb1f24bb7606b895a0e718732488 479 Gene3D G3DSA:3.40.1380.20 334 467 8.5E-165 T 12-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMJ96_CH03787 9ebebb1f24bb7606b895a0e718732488 479 Pfam PF02887 Pyruvate kinase, alpha/beta domain 356 468 7.1E-32 T 12-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMJ96_CH03787 9ebebb1f24bb7606b895a0e718732488 479 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 5 470 1.2E-145 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMJ96_CH03787 9ebebb1f24bb7606b895a0e718732488 479 PRINTS PR01050 Pyruvate kinase family signature 242 266 3.5E-65 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMJ96_CH03787 9ebebb1f24bb7606b895a0e718732488 479 PRINTS PR01050 Pyruvate kinase family signature 188 202 3.5E-65 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMJ96_CH03787 9ebebb1f24bb7606b895a0e718732488 479 PRINTS PR01050 Pyruvate kinase family signature 267 291 3.5E-65 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMJ96_CH03787 9ebebb1f24bb7606b895a0e718732488 479 PRINTS PR01050 Pyruvate kinase family signature 311 327 3.5E-65 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMJ96_CH03787 9ebebb1f24bb7606b895a0e718732488 479 PRINTS PR01050 Pyruvate kinase family signature 62 78 3.5E-65 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMJ96_CH03787 9ebebb1f24bb7606b895a0e718732488 479 PRINTS PR01050 Pyruvate kinase family signature 215 241 3.5E-65 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMJ96_CH03787 9ebebb1f24bb7606b895a0e718732488 479 PRINTS PR01050 Pyruvate kinase family signature 292 310 3.5E-65 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMJ96_CH03787 9ebebb1f24bb7606b895a0e718732488 479 SUPERFAMILY SSF52935 321 471 6.15E-39 T 12-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMJ96_CH03787 9ebebb1f24bb7606b895a0e718732488 479 Gene3D G3DSA:2.40.33.10 73 169 8.5E-165 T 12-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMJ96_CH03787 9ebebb1f24bb7606b895a0e718732488 479 ProSitePatterns PS00110 Pyruvate kinase active site signature. 213 225 - T 12-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AMJ96_CH03787 9ebebb1f24bb7606b895a0e718732488 479 Gene3D G3DSA:3.20.20.60 5 333 8.5E-165 T 12-10-2018 AMJ96_CH03787 9ebebb1f24bb7606b895a0e718732488 479 SUPERFAMILY SSF50800 73 166 3.14E-25 T 12-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily AMJ96_PB00326 4edf70a91d07e940a8acb67256eafb1a 207 Pfam PF13007 Transposase C of IS166 homeodomain 45 121 1.2E-18 T 12-10-2018 IPR024463 Transposase TnpC, homeodomain AMJ96_PB00326 4edf70a91d07e940a8acb67256eafb1a 207 Pfam PF13005 zinc-finger binding domain of transposase IS66 127 172 4.0E-15 T 12-10-2018 IPR024474 Zinc-finger binding domain of transposase IS66 AMJ96_CH04300 c346baecbba57947aa58e01c177b6899 1103 Pfam PF13440 Polysaccharide biosynthesis protein 30 327 1.9E-11 T 12-10-2018 AMJ96_CH04300 c346baecbba57947aa58e01c177b6899 1103 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 333 467 4.9E-7 T 12-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain AMJ96_CH04300 c346baecbba57947aa58e01c177b6899 1103 SUPERFAMILY SSF53474 818 1099 8.11E-24 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH04300 c346baecbba57947aa58e01c177b6899 1103 SUPERFAMILY SSF53474 541 783 9.31E-17 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH04300 c346baecbba57947aa58e01c177b6899 1103 Gene3D G3DSA:3.40.50.1820 537 723 1.2E-14 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH04300 c346baecbba57947aa58e01c177b6899 1103 Gene3D G3DSA:3.40.50.1820 814 1097 5.7E-22 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH03397 82315ba869beceb607bab1dfec68d151 384 SUPERFAMILY SSF56601 30 381 4.15E-86 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMJ96_CH03397 82315ba869beceb607bab1dfec68d151 384 Pfam PF00144 Beta-lactamase 34 380 1.9E-74 T 12-10-2018 IPR001466 Beta-lactamase-related AMJ96_CH03397 82315ba869beceb607bab1dfec68d151 384 Gene3D G3DSA:3.40.710.10 23 383 4.4E-124 T 12-10-2018 AMJ96_CH03397 82315ba869beceb607bab1dfec68d151 384 ProSitePatterns PS00336 Beta-lactamase class-C active site. 82 89 - T 12-10-2018 IPR001586 Beta-lactamase, class-C active site GO:0008800|GO:0017001|GO:0030288 KEGG: 00311+3.5.2.6 AMJ96_CH00056 9301f016d67d59cbef0771ad1ba1c060 192 SUPERFAMILY SSF52172 20 178 2.85E-33 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH00056 9301f016d67d59cbef0771ad1ba1c060 192 Pfam PF00072 Response regulator receiver domain 24 132 2.2E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00056 9301f016d67d59cbef0771ad1ba1c060 192 Gene3D G3DSA:1.10.10.60 136 192 2.2E-23 T 12-10-2018 AMJ96_CH00056 9301f016d67d59cbef0771ad1ba1c060 192 Pfam PF02954 Bacterial regulatory protein, Fis family 156 184 1.7E-4 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMJ96_CH00056 9301f016d67d59cbef0771ad1ba1c060 192 Gene3D G3DSA:3.40.50.2300 22 135 1.5E-29 T 12-10-2018 AMJ96_CH00056 9301f016d67d59cbef0771ad1ba1c060 192 SMART SM00448 21 132 1.2E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02734 3bfd4332dc29c90a1040acc0bf5227f8 223 Gene3D G3DSA:3.40.50.2300 1 121 4.3E-34 T 12-10-2018 AMJ96_CH02734 3bfd4332dc29c90a1040acc0bf5227f8 223 SMART SM00448 1 112 1.8E-30 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02734 3bfd4332dc29c90a1040acc0bf5227f8 223 Gene3D G3DSA:1.10.10.10 122 223 3.2E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02734 3bfd4332dc29c90a1040acc0bf5227f8 223 SUPERFAMILY SSF52172 1 166 8.4E-35 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH02734 3bfd4332dc29c90a1040acc0bf5227f8 223 SMART SM00862 145 220 2.0E-17 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH02734 3bfd4332dc29c90a1040acc0bf5227f8 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 8.2E-18 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH02734 3bfd4332dc29c90a1040acc0bf5227f8 223 Pfam PF00072 Response regulator receiver domain 3 112 7.7E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PA00084 b5b6f32149a7627838adeb436d11f3be 355 SUPERFAMILY SSF46689 297 346 5.82E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PA00084 b5b6f32149a7627838adeb436d11f3be 355 Pfam PF12833 Helix-turn-helix domain 268 345 4.5E-17 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PA00084 b5b6f32149a7627838adeb436d11f3be 355 SMART SM00342 261 344 9.4E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PA00084 b5b6f32149a7627838adeb436d11f3be 355 Gene3D G3DSA:1.10.10.60 245 354 3.0E-21 T 12-10-2018 AMJ96_PA00084 b5b6f32149a7627838adeb436d11f3be 355 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 44 218 2.4E-40 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal AMJ96_PA00084 b5b6f32149a7627838adeb436d11f3be 355 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 313 328 9.3E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_PA00084 b5b6f32149a7627838adeb436d11f3be 355 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 328 344 9.3E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_CH03252 cf19e627f3b8997612ed2a7670e05b50 573 SUPERFAMILY SSF51445 10 471 1.33E-130 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH03252 cf19e627f3b8997612ed2a7670e05b50 573 Gene3D G3DSA:2.60.40.1180 478 548 7.4E-6 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta AMJ96_CH03252 cf19e627f3b8997612ed2a7670e05b50 573 Pfam PF16657 Maltogenic Amylase, C-terminal domain 474 540 4.7E-8 T 12-10-2018 IPR032091 Maltogenic Amylase, C-terminal AMJ96_CH03252 cf19e627f3b8997612ed2a7670e05b50 573 Gene3D G3DSA:3.20.20.80 11 466 1.7E-172 T 12-10-2018 AMJ96_CH03252 cf19e627f3b8997612ed2a7670e05b50 573 Gene3D G3DSA:3.90.400.10 111 181 1.7E-172 T 12-10-2018 AMJ96_CH03252 cf19e627f3b8997612ed2a7670e05b50 573 Pfam PF00128 Alpha amylase, catalytic domain 34 385 2.7E-85 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_CH03252 cf19e627f3b8997612ed2a7670e05b50 573 SUPERFAMILY SSF51011 474 548 9.6E-10 T 12-10-2018 AMJ96_CH03252 cf19e627f3b8997612ed2a7670e05b50 573 SMART SM00642 19 411 1.8E-118 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 SMART SM00889 424 539 6.0E-7 T 12-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 PRINTS PR00315 GTP-binding elongation factor signature 87 98 5.3E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 PRINTS PR00315 GTP-binding elongation factor signature 71 81 5.3E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 PRINTS PR00315 GTP-binding elongation factor signature 123 132 5.3E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 PRINTS PR00315 GTP-binding elongation factor signature 5 18 5.3E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 PRINTS PR00315 GTP-binding elongation factor signature 51 59 5.3E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 Pfam PF00009 Elongation factor Tu GTP binding domain 2 248 2.1E-52 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 Pfam PF03764 Elongation factor G, domain IV 445 539 1.9E-15 T 12-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 SUPERFAMILY SSF54980 349 425 8.63E-13 T 12-10-2018 IPR035647 EF-G domain III/V-like AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 SUPERFAMILY SSF54211 444 538 2.96E-15 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 Pfam PF14492 Elongation Factor G, domain II 348 420 1.1E-9 T 12-10-2018 AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 SUPERFAMILY SSF50447 233 336 3.77E-10 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 Gene3D G3DSA:3.30.230.10 450 620 4.8E-22 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 Gene3D G3DSA:2.40.30.10 257 342 3.0E-6 T 12-10-2018 AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 SUPERFAMILY SSF54980 541 625 6.23E-10 T 12-10-2018 IPR035647 EF-G domain III/V-like AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 SUPERFAMILY SSF52540 3 248 6.27E-66 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 Gene3D G3DSA:3.40.50.300 1 256 1.9E-71 T 12-10-2018 AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 Gene3D G3DSA:3.30.70.870 349 422 7.1E-10 T 12-10-2018 AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 Pfam PF00679 Elongation factor G C-terminus 541 623 3.2E-10 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 Gene3D G3DSA:3.30.70.240 545 615 4.8E-22 T 12-10-2018 AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 PRINTS PR01037 Tetracycline resistance protein TetO/TetQ/TetM family signature 462 476 3.8E-27 T 12-10-2018 AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 PRINTS PR01037 Tetracycline resistance protein TetO/TetQ/TetM family signature 477 499 3.8E-27 T 12-10-2018 AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 PRINTS PR01037 Tetracycline resistance protein TetO/TetQ/TetM family signature 222 244 3.8E-27 T 12-10-2018 AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 PRINTS PR01037 Tetracycline resistance protein TetO/TetQ/TetM family signature 511 528 3.8E-27 T 12-10-2018 AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 PRINTS PR01037 Tetracycline resistance protein TetO/TetQ/TetM family signature 109 132 3.8E-27 T 12-10-2018 AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 PRINTS PR01037 Tetracycline resistance protein TetO/TetQ/TetM family signature 276 302 3.8E-27 T 12-10-2018 AMJ96_CH02923 299838392aeac7f3eca4525c973ab822 648 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 1 151 7.5E-27 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMJ96_CH02472 c6bf43edfebb91beba8bac090eeb6f13 329 SUPERFAMILY SSF51430 1 314 2.1E-99 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH02472 c6bf43edfebb91beba8bac090eeb6f13 329 Gene3D G3DSA:3.20.20.100 1 328 9.6E-115 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH02472 c6bf43edfebb91beba8bac090eeb6f13 329 Pfam PF00248 Aldo/keto reductase family 16 308 3.3E-72 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_CH01825 3bde1c129310e98b1f4655dcdf279ed2 289 Gene3D G3DSA:3.40.250.10 151 281 1.5E-37 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily AMJ96_CH01825 3bde1c129310e98b1f4655dcdf279ed2 289 SUPERFAMILY SSF52821 6 154 1.44E-44 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily AMJ96_CH01825 3bde1c129310e98b1f4655dcdf279ed2 289 Gene3D G3DSA:3.40.250.10 8 150 6.2E-48 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily AMJ96_CH01825 3bde1c129310e98b1f4655dcdf279ed2 289 ProSitePatterns PS00380 Rhodanese signature 1. 44 55 - T 12-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 AMJ96_CH01825 3bde1c129310e98b1f4655dcdf279ed2 289 SUPERFAMILY SSF52821 160 286 3.93E-34 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily AMJ96_CH01825 3bde1c129310e98b1f4655dcdf279ed2 289 SMART SM00450 10 134 1.3E-24 T 12-10-2018 IPR001763 Rhodanese-like domain AMJ96_CH01825 3bde1c129310e98b1f4655dcdf279ed2 289 SMART SM00450 157 277 5.7E-14 T 12-10-2018 IPR001763 Rhodanese-like domain AMJ96_CH01825 3bde1c129310e98b1f4655dcdf279ed2 289 Pfam PF00581 Rhodanese-like domain 161 272 7.5E-9 T 12-10-2018 IPR001763 Rhodanese-like domain AMJ96_CH01825 3bde1c129310e98b1f4655dcdf279ed2 289 Pfam PF00581 Rhodanese-like domain 11 130 2.0E-18 T 12-10-2018 IPR001763 Rhodanese-like domain AMJ96_CH03630 0430dbaabe8b7c13e0c7be7823d37728 188 Gene3D G3DSA:3.30.70.3270 40 183 1.0E-37 T 12-10-2018 AMJ96_CH03630 0430dbaabe8b7c13e0c7be7823d37728 188 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 14 153 27.273 T 12-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03630 0430dbaabe8b7c13e0c7be7823d37728 188 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 68 79 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMJ96_CH03630 0430dbaabe8b7c13e0c7be7823d37728 188 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 107 118 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMJ96_CH03630 0430dbaabe8b7c13e0c7be7823d37728 188 SUPERFAMILY SSF54862 44 144 2.09E-22 T 12-10-2018 AMJ96_CH03630 0430dbaabe8b7c13e0c7be7823d37728 188 Pfam PF12838 4Fe-4S dicluster domain 67 121 1.9E-9 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMJ96_CH03630 0430dbaabe8b7c13e0c7be7823d37728 188 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 24 145 1.7E-49 T 12-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01223 356e139baa4c801e8ac069d2822dd67a 518 Gene3D G3DSA:3.40.50.300 206 389 7.9E-21 T 12-10-2018 AMJ96_CH01223 356e139baa4c801e8ac069d2822dd67a 518 Pfam PF05872 Bacterial protein of unknown function (DUF853) 15 516 8.1E-242 T 12-10-2018 IPR033186 Helicase HerA-like C-terminal AMJ96_CH01223 356e139baa4c801e8ac069d2822dd67a 518 SUPERFAMILY SSF52540 20 390 3.14E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01223 356e139baa4c801e8ac069d2822dd67a 518 Gene3D G3DSA:3.40.50.300 9 134 3.7E-9 T 12-10-2018 AMJ96_CH00696 1319a018b54b49285b0deed555e2669d 465 SUPERFAMILY SSF52540 106 374 7.45E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00696 1319a018b54b49285b0deed555e2669d 465 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 32 438 7.3E-124 T 12-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_CH00696 1319a018b54b49285b0deed555e2669d 465 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 361 370 - T 12-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_CH00696 1319a018b54b49285b0deed555e2669d 465 TIGRFAM TIGR03498 FliI_clade3: flagellar protein export ATPase FliI 36 447 3.5E-185 T 12-10-2018 IPR022426 Flagellum-specific ATP synthase FliI, clade 3 GO:0009288|GO:0016887|GO:0030257|GO:0044781 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_CH00696 1319a018b54b49285b0deed555e2669d 465 Gene3D G3DSA:3.40.50.12240 30 449 5.9E-119 T 12-10-2018 AMJ96_CH00696 1319a018b54b49285b0deed555e2669d 465 SMART SM00382 172 354 5.3E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00696 1319a018b54b49285b0deed555e2669d 465 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 370 2.5E-69 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_CH02660 5de5ce9d9c1bc563336a0f059cbc53e9 1052 Gene3D G3DSA:3.40.50.300 753 945 4.8E-33 T 12-10-2018 AMJ96_CH02660 5de5ce9d9c1bc563336a0f059cbc53e9 1052 Gene3D G3DSA:3.40.960.10 952 1052 1.8E-14 T 12-10-2018 AMJ96_CH02660 5de5ce9d9c1bc563336a0f059cbc53e9 1052 SUPERFAMILY SSF52540 360 926 4.77E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02660 5de5ce9d9c1bc563336a0f059cbc53e9 1052 SUPERFAMILY SSF52980 949 1050 3.16E-10 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMJ96_CH02660 5de5ce9d9c1bc563336a0f059cbc53e9 1052 Pfam PF13604 AAA domain 361 438 1.6E-6 T 12-10-2018 AMJ96_CH02660 5de5ce9d9c1bc563336a0f059cbc53e9 1052 Pfam PF13087 AAA domain 732 920 6.9E-30 T 12-10-2018 AMJ96_CH02660 5de5ce9d9c1bc563336a0f059cbc53e9 1052 Pfam PF04480 Protein of unknown function (DUF559) 988 1050 5.4E-6 T 12-10-2018 IPR007569 Protein of unknown function DUF559 AMJ96_CH02107 c307192305302367d8e4a08933d114bb 357 SMART SM00382 28 211 2.8E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02107 c307192305302367d8e4a08933d114bb 357 Gene3D G3DSA:2.40.50.940 222 350 1.9E-29 T 12-10-2018 AMJ96_CH02107 c307192305302367d8e4a08933d114bb 357 SUPERFAMILY SSF50331 236 356 1.43E-26 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH02107 c307192305302367d8e4a08933d114bb 357 Pfam PF08402 TOBE domain 280 349 1.5E-6 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_CH02107 c307192305302367d8e4a08933d114bb 357 Gene3D G3DSA:2.40.50.140 286 341 1.9E-29 T 12-10-2018 AMJ96_CH02107 c307192305302367d8e4a08933d114bb 357 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02107 c307192305302367d8e4a08933d114bb 357 Gene3D G3DSA:3.40.50.300 3 221 4.1E-68 T 12-10-2018 AMJ96_CH02107 c307192305302367d8e4a08933d114bb 357 SUPERFAMILY SSF52540 4 242 6.36E-87 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02107 c307192305302367d8e4a08933d114bb 357 Pfam PF00005 ABC transporter 20 161 3.3E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00617 cb743d60667785d008fe9828511de6a7 431 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 6 428 41.419 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMJ96_CH00617 cb743d60667785d008fe9828511de6a7 431 PIRSF PIRSF000099 3 430 8.8E-161 T 12-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMJ96_CH00617 cb743d60667785d008fe9828511de6a7 431 Gene3D G3DSA:3.40.50.1980 33 232 6.0E-122 T 12-10-2018 AMJ96_CH00617 cb743d60667785d008fe9828511de6a7 431 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 230 262 - T 12-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 AMJ96_CH00617 cb743d60667785d008fe9828511de6a7 431 PRINTS PR00083 Histidinol dehydrogenase signature 171 197 2.6E-85 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMJ96_CH00617 cb743d60667785d008fe9828511de6a7 431 PRINTS PR00083 Histidinol dehydrogenase signature 201 226 2.6E-85 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMJ96_CH00617 cb743d60667785d008fe9828511de6a7 431 PRINTS PR00083 Histidinol dehydrogenase signature 362 380 2.6E-85 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMJ96_CH00617 cb743d60667785d008fe9828511de6a7 431 PRINTS PR00083 Histidinol dehydrogenase signature 252 271 2.6E-85 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMJ96_CH00617 cb743d60667785d008fe9828511de6a7 431 PRINTS PR00083 Histidinol dehydrogenase signature 34 58 2.6E-85 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMJ96_CH00617 cb743d60667785d008fe9828511de6a7 431 PRINTS PR00083 Histidinol dehydrogenase signature 230 251 2.6E-85 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMJ96_CH00617 cb743d60667785d008fe9828511de6a7 431 PRINTS PR00083 Histidinol dehydrogenase signature 321 346 2.6E-85 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMJ96_CH00617 cb743d60667785d008fe9828511de6a7 431 PRINTS PR00083 Histidinol dehydrogenase signature 137 163 2.6E-85 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMJ96_CH00617 cb743d60667785d008fe9828511de6a7 431 SUPERFAMILY SSF53720 26 429 2.16E-79 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_CH00617 cb743d60667785d008fe9828511de6a7 431 Gene3D G3DSA:3.40.50.1980 234 350 6.0E-122 T 12-10-2018 AMJ96_CH00617 cb743d60667785d008fe9828511de6a7 431 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 35 427 3.9E-157 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMJ96_CH00617 cb743d60667785d008fe9828511de6a7 431 Pfam PF00815 Histidinol dehydrogenase 23 428 5.3E-164 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AMJ96_CH00752 f3109c964f1961dfddeae9acff182e53 615 Pfam PF17201 Cache 3/Cache 2 fusion domain 62 192 4.3E-33 T 12-10-2018 IPR033462 Cache 3/Cache 2 fusion domain AMJ96_CH00752 f3109c964f1961dfddeae9acff182e53 615 Gene3D G3DSA:1.10.287.950 298 601 8.6E-74 T 12-10-2018 AMJ96_CH00752 f3109c964f1961dfddeae9acff182e53 615 SMART SM00283 352 599 6.0E-92 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH00752 f3109c964f1961dfddeae9acff182e53 615 SMART SM00304 218 271 2.1E-6 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH00752 f3109c964f1961dfddeae9acff182e53 615 Gene3D G3DSA:1.20.1480.50 184 276 7.8E-11 T 12-10-2018 AMJ96_CH00752 f3109c964f1961dfddeae9acff182e53 615 SUPERFAMILY SSF58104 319 601 1.57E-64 T 12-10-2018 AMJ96_CH00752 f3109c964f1961dfddeae9acff182e53 615 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 412 567 5.5E-49 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH00752 f3109c964f1961dfddeae9acff182e53 615 SUPERFAMILY SSF103190 94 185 2.63E-9 T 12-10-2018 IPR029151 Periplasmic sensor-like domain superfamily AMJ96_CH00752 f3109c964f1961dfddeae9acff182e53 615 SUPERFAMILY SSF158472 219 267 4.32E-6 T 12-10-2018 AMJ96_PB00434 4d4fc32607ee9d3420d6676a0359f796 344 Gene3D G3DSA:3.90.180.10 14 330 1.8E-55 T 12-10-2018 AMJ96_PB00434 4d4fc32607ee9d3420d6676a0359f796 344 SUPERFAMILY SSF50129 4 175 3.25E-34 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_PB00434 4d4fc32607ee9d3420d6676a0359f796 344 SUPERFAMILY SSF51735 143 311 1.04E-19 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PB00434 4d4fc32607ee9d3420d6676a0359f796 344 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 135 6.6E-18 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_PB00434 4d4fc32607ee9d3420d6676a0359f796 344 Gene3D G3DSA:3.40.50.720 153 290 1.8E-55 T 12-10-2018 AMJ96_CH01823 66be4771c28793a15e4c0d3f2ccf5b18 169 Pfam PF06718 Protein of unknown function (DUF1203) 38 156 2.0E-36 T 12-10-2018 IPR009593 Protein of unknown function DUF1203 AMJ96_CH01823 66be4771c28793a15e4c0d3f2ccf5b18 169 PIRSF PIRSF034110 1 157 1.7E-56 T 12-10-2018 IPR009593 Protein of unknown function DUF1203 AMJ96_CH01861 7a9ac6e6f7102a782bf90bc6baeb077e 947 Hamap MF_02004 Valine--tRNA ligase [valS]. 2 944 15.704 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMJ96_CH01861 7a9ac6e6f7102a782bf90bc6baeb077e 947 SUPERFAMILY SSF50677 194 382 4.06E-55 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMJ96_CH01861 7a9ac6e6f7102a782bf90bc6baeb077e 947 SUPERFAMILY SSF52374 3 641 7.43E-140 T 12-10-2018 AMJ96_CH01861 7a9ac6e6f7102a782bf90bc6baeb077e 947 Gene3D G3DSA:1.10.287.380 872 944 1.1E-20 T 12-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 AMJ96_CH01861 7a9ac6e6f7102a782bf90bc6baeb077e 947 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 15 631 3.5E-206 T 12-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH01861 7a9ac6e6f7102a782bf90bc6baeb077e 947 SUPERFAMILY SSF46589 879 942 1.26E-16 T 12-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 AMJ96_CH01861 7a9ac6e6f7102a782bf90bc6baeb077e 947 Pfam PF08264 Anticodon-binding domain of tRNA 673 821 2.6E-42 T 12-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 AMJ96_CH01861 7a9ac6e6f7102a782bf90bc6baeb077e 947 TIGRFAM TIGR00422 valS: valine--tRNA ligase 3 926 0.0 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMJ96_CH01861 7a9ac6e6f7102a782bf90bc6baeb077e 947 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 879 942 4.1E-20 T 12-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 AMJ96_CH01861 7a9ac6e6f7102a782bf90bc6baeb077e 947 Gene3D G3DSA:3.90.740.10 178 382 2.1E-286 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMJ96_CH01861 7a9ac6e6f7102a782bf90bc6baeb077e 947 PRINTS PR00986 Valyl-tRNA synthetase signature 253 270 2.2E-35 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMJ96_CH01861 7a9ac6e6f7102a782bf90bc6baeb077e 947 PRINTS PR00986 Valyl-tRNA synthetase signature 38 49 2.2E-35 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMJ96_CH01861 7a9ac6e6f7102a782bf90bc6baeb077e 947 PRINTS PR00986 Valyl-tRNA synthetase signature 506 527 2.2E-35 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMJ96_CH01861 7a9ac6e6f7102a782bf90bc6baeb077e 947 PRINTS PR00986 Valyl-tRNA synthetase signature 386 399 2.2E-35 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMJ96_CH01861 7a9ac6e6f7102a782bf90bc6baeb077e 947 PRINTS PR00986 Valyl-tRNA synthetase signature 537 555 2.2E-35 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AMJ96_CH01861 7a9ac6e6f7102a782bf90bc6baeb077e 947 Gene3D G3DSA:3.40.50.620 22 592 2.1E-286 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH01861 7a9ac6e6f7102a782bf90bc6baeb077e 947 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 45 56 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH01861 7a9ac6e6f7102a782bf90bc6baeb077e 947 SUPERFAMILY SSF47323 643 893 3.92E-62 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH01861 7a9ac6e6f7102a782bf90bc6baeb077e 947 Gene3D G3DSA:1.10.730.10 2 809 2.1E-286 T 12-10-2018 AMJ96_CH03726 98917e467465575cae44cc0f4dc66ada 125 Pfam PF07681 DoxX 10 88 1.2E-8 T 12-10-2018 IPR032808 DoxX family AMJ96_PB00308 116a0de430406a24faade23de805486f 584 Pfam PF01590 GAF domain 46 186 7.4E-15 T 12-10-2018 IPR003018 GAF domain GO:0005515 AMJ96_PB00308 116a0de430406a24faade23de805486f 584 SMART SM00382 249 392 1.4E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PB00308 116a0de430406a24faade23de805486f 584 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 560 580 4.8E-9 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMJ96_PB00308 116a0de430406a24faade23de805486f 584 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 543 560 4.8E-9 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMJ96_PB00308 116a0de430406a24faade23de805486f 584 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 441 450 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AMJ96_PB00308 116a0de430406a24faade23de805486f 584 TIGRFAM TIGR01817 nifA: Nif-specific regulatory protein 29 584 1.9E-229 T 12-10-2018 IPR010113 Nif-specific regulatory protein GO:0003700|GO:0006355|GO:0009399 AMJ96_PB00308 116a0de430406a24faade23de805486f 584 SUPERFAMILY SSF55781 29 191 1.13E-17 T 12-10-2018 AMJ96_PB00308 116a0de430406a24faade23de805486f 584 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 253 266 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMJ96_PB00308 116a0de430406a24faade23de805486f 584 Pfam PF02954 Bacterial regulatory protein, Fis family 541 577 2.8E-11 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMJ96_PB00308 116a0de430406a24faade23de805486f 584 Gene3D G3DSA:3.40.50.300 221 399 1.2E-66 T 12-10-2018 AMJ96_PB00308 116a0de430406a24faade23de805486f 584 SUPERFAMILY SSF52540 228 469 7.25E-71 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PB00308 116a0de430406a24faade23de805486f 584 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 315 330 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMJ96_PB00308 116a0de430406a24faade23de805486f 584 SMART SM00065 45 197 1.8E-27 T 12-10-2018 IPR003018 GAF domain GO:0005515 AMJ96_PB00308 116a0de430406a24faade23de805486f 584 Gene3D G3DSA:3.30.450.40 27 200 2.4E-28 T 12-10-2018 IPR029016 GAF-like domain superfamily AMJ96_PB00308 116a0de430406a24faade23de805486f 584 Gene3D G3DSA:1.10.8.60 400 465 6.1E-18 T 12-10-2018 AMJ96_PB00308 116a0de430406a24faade23de805486f 584 Gene3D G3DSA:1.10.10.60 534 584 1.3E-7 T 12-10-2018 AMJ96_PB00308 116a0de430406a24faade23de805486f 584 Pfam PF00158 Sigma-54 interaction domain 229 395 7.4E-71 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMJ96_CH04043 a59c62ef16b785ff8e6e269e563d1485 119 Gene3D G3DSA:3.40.50.2300 1 119 4.8E-30 T 12-10-2018 AMJ96_CH04043 a59c62ef16b785ff8e6e269e563d1485 119 SUPERFAMILY SSF52172 1 117 1.29E-31 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH04043 a59c62ef16b785ff8e6e269e563d1485 119 Pfam PF00072 Response regulator receiver domain 4 113 9.2E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH04043 a59c62ef16b785ff8e6e269e563d1485 119 SMART SM00448 2 113 4.2E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01255 c68a97f5ee188670b7d0073ff303df44 304 Gene3D G3DSA:1.10.760.10 4 159 8.7E-10 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_CH01255 c68a97f5ee188670b7d0073ff303df44 304 Gene3D G3DSA:1.10.760.10 178 303 9.2E-8 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_CH01255 c68a97f5ee188670b7d0073ff303df44 304 SUPERFAMILY SSF46626 184 303 2.01E-13 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_CH01255 c68a97f5ee188670b7d0073ff303df44 304 Pfam PF00034 Cytochrome c 46 150 4.5E-7 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH01255 c68a97f5ee188670b7d0073ff303df44 304 SUPERFAMILY SSF46626 43 171 1.52E-22 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_PD00698 8bcaff758e38a5b66d7617d26863c052 324 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 53 230 4.2E-35 T 12-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 AMJ96_PD00698 8bcaff758e38a5b66d7617d26863c052 324 SMART SM00470 53 144 7.0E-24 T 12-10-2018 IPR003115 ParB/Sulfiredoxin AMJ96_PD00698 8bcaff758e38a5b66d7617d26863c052 324 Pfam PF02195 ParB-like nuclease domain 66 143 3.6E-19 T 12-10-2018 IPR003115 ParB/Sulfiredoxin AMJ96_PD00698 8bcaff758e38a5b66d7617d26863c052 324 SUPERFAMILY SSF109709 138 194 2.49E-8 T 12-10-2018 AMJ96_PD00698 8bcaff758e38a5b66d7617d26863c052 324 Gene3D G3DSA:3.90.1530.30 67 130 1.6E-12 T 12-10-2018 AMJ96_PD00698 8bcaff758e38a5b66d7617d26863c052 324 TIGRFAM TIGR03454 partition_RepB: plasmid partitioning protein RepB 2 315 9.4E-105 T 12-10-2018 IPR017819 Plasmid partitioning protein, RepB AMJ96_PD00698 8bcaff758e38a5b66d7617d26863c052 324 Gene3D G3DSA:1.10.10.2830 131 241 7.7E-6 T 12-10-2018 AMJ96_PD00698 8bcaff758e38a5b66d7617d26863c052 324 Pfam PF07506 RepB plasmid partitioning protein 145 315 2.2E-34 T 12-10-2018 IPR011111 RepB plasmid partition AMJ96_PD00698 8bcaff758e38a5b66d7617d26863c052 324 SUPERFAMILY SSF110849 53 146 1.43E-19 T 12-10-2018 IPR036086 ParB/Sulfiredoxin superfamily AMJ96_CH00372 35d581ab45e1b84bbb8973da9012e406 516 SMART SM00760 424 493 2.7E-40 T 12-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AMJ96_CH00372 35d581ab45e1b84bbb8973da9012e406 516 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 425 493 7.7E-31 T 12-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AMJ96_CH00372 35d581ab45e1b84bbb8973da9012e406 516 Gene3D G3DSA:1.10.8.60 342 415 2.1E-8 T 12-10-2018 AMJ96_CH00372 35d581ab45e1b84bbb8973da9012e406 516 Gene3D G3DSA:3.40.50.300 168 340 1.1E-38 T 12-10-2018 AMJ96_CH00372 35d581ab45e1b84bbb8973da9012e406 516 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 474 493 3.5E-41 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMJ96_CH00372 35d581ab45e1b84bbb8973da9012e406 516 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 210 230 3.5E-41 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMJ96_CH00372 35d581ab45e1b84bbb8973da9012e406 516 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 242 256 3.5E-41 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMJ96_CH00372 35d581ab45e1b84bbb8973da9012e406 516 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 274 288 3.5E-41 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMJ96_CH00372 35d581ab45e1b84bbb8973da9012e406 516 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 307 334 3.5E-41 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AMJ96_CH00372 35d581ab45e1b84bbb8973da9012e406 516 Gene3D G3DSA:1.10.1750.10 416 516 4.0E-35 T 12-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMJ96_CH00372 35d581ab45e1b84bbb8973da9012e406 516 SUPERFAMILY SSF52540 175 392 9.71E-30 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00372 35d581ab45e1b84bbb8973da9012e406 516 SUPERFAMILY SSF48295 414 515 6.28E-36 T 12-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMJ96_CH00372 35d581ab45e1b84bbb8973da9012e406 516 Pfam PF11638 DnaA N-terminal domain 40 100 3.9E-19 T 12-10-2018 IPR024633 DnaA N-terminal domain AMJ96_CH00372 35d581ab45e1b84bbb8973da9012e406 516 Pfam PF00308 Bacterial dnaA protein 175 398 3.3E-85 T 12-10-2018 IPR013317 Chromosomal replication initiator protein DnaA AMJ96_CH00372 35d581ab45e1b84bbb8973da9012e406 516 Gene3D G3DSA:3.30.300.180 33 114 1.6E-11 T 12-10-2018 IPR038454 DnaA, N-terminal domain superfamily AMJ96_CH00372 35d581ab45e1b84bbb8973da9012e406 516 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 42 513 2.1E-147 T 12-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMJ96_CH00372 35d581ab45e1b84bbb8973da9012e406 516 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 38 515 28.781 T 12-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMJ96_CH00372 35d581ab45e1b84bbb8973da9012e406 516 SMART SM00382 209 337 2.2E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00372 35d581ab45e1b84bbb8973da9012e406 516 ProSitePatterns PS01008 DnaA protein signature. 474 493 - T 12-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AMJ96_CH00626 b13d51eda36cdfd193732ce5b79a7bf5 205 SUPERFAMILY SSF101874 29 199 1.7E-32 T 12-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily AMJ96_CH00626 b13d51eda36cdfd193732ce5b79a7bf5 205 SMART SM00867 30 198 2.6E-43 T 12-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AMJ96_CH00626 b13d51eda36cdfd193732ce5b79a7bf5 205 Gene3D G3DSA:2.40.128.110 28 199 2.7E-34 T 12-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily AMJ96_CH00626 b13d51eda36cdfd193732ce5b79a7bf5 205 Pfam PF04264 YceI-like domain 31 196 3.0E-27 T 12-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AMJ96_PD00518 39ffd7dbfcd8cb05539ea20ea183b849 182 SUPERFAMILY SSF47413 3 69 2.25E-16 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PD00518 39ffd7dbfcd8cb05539ea20ea183b849 182 Pfam PF01381 Helix-turn-helix 9 63 1.6E-12 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_PD00518 39ffd7dbfcd8cb05539ea20ea183b849 182 Gene3D G3DSA:1.10.260.40 1 68 6.6E-16 T 12-10-2018 AMJ96_PD00518 39ffd7dbfcd8cb05539ea20ea183b849 182 SMART SM00530 8 63 1.2E-12 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_PD00518 39ffd7dbfcd8cb05539ea20ea183b849 182 SUPERFAMILY SSF51182 60 182 1.12E-25 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_PD00518 39ffd7dbfcd8cb05539ea20ea183b849 182 Gene3D G3DSA:2.60.120.10 69 181 1.8E-20 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PD00518 39ffd7dbfcd8cb05539ea20ea183b849 182 Pfam PF07883 Cupin domain 109 175 6.0E-19 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_CH01798 d05a1456b27b8b9fc69478fa578a191c 421 SUPERFAMILY SSF52151 26 287 3.66E-28 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMJ96_CH01798 d05a1456b27b8b9fc69478fa578a191c 421 Pfam PF01734 Patatin-like phospholipase 30 249 2.2E-20 T 12-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AMJ96_CH01798 d05a1456b27b8b9fc69478fa578a191c 421 Gene3D G3DSA:3.40.1090.10 11 86 8.0E-12 T 12-10-2018 AMJ96_CH01798 d05a1456b27b8b9fc69478fa578a191c 421 Gene3D G3DSA:3.40.1090.10 125 303 1.1E-7 T 12-10-2018 AMJ96_CH01096 ee07fb9faa09f2dc0aff9cb1f48ab10e 1427 SMART SM00237 727 836 1.0E-6 T 12-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 AMJ96_CH01096 ee07fb9faa09f2dc0aff9cb1f48ab10e 1427 SMART SM00237 850 949 2.3E-25 T 12-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 AMJ96_CH01096 ee07fb9faa09f2dc0aff9cb1f48ab10e 1427 Pfam PF03160 Calx-beta domain 743 834 3.3E-11 T 12-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 AMJ96_CH01096 ee07fb9faa09f2dc0aff9cb1f48ab10e 1427 Pfam PF03160 Calx-beta domain 852 949 4.3E-20 T 12-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 AMJ96_CH01096 ee07fb9faa09f2dc0aff9cb1f48ab10e 1427 Gene3D G3DSA:2.60.40.2030 861 969 3.2E-32 T 12-10-2018 IPR038081 CalX-like domain superfamily AMJ96_CH01096 ee07fb9faa09f2dc0aff9cb1f48ab10e 1427 Gene3D G3DSA:2.60.40.2030 740 859 2.0E-24 T 12-10-2018 IPR038081 CalX-like domain superfamily AMJ96_CH01096 ee07fb9faa09f2dc0aff9cb1f48ab10e 1427 Gene3D G3DSA:2.60.40.2700 93 182 1.4E-8 T 12-10-2018 AMJ96_CH01096 ee07fb9faa09f2dc0aff9cb1f48ab10e 1427 Gene3D G3DSA:2.60.40.2700 191 286 2.8E-5 T 12-10-2018 AMJ96_CH01096 ee07fb9faa09f2dc0aff9cb1f48ab10e 1427 Gene3D G3DSA:2.60.40.2700 382 478 1.8E-10 T 12-10-2018 AMJ96_CH01096 ee07fb9faa09f2dc0aff9cb1f48ab10e 1427 Gene3D G3DSA:2.60.40.2700 287 378 3.0E-8 T 12-10-2018 AMJ96_CH01096 ee07fb9faa09f2dc0aff9cb1f48ab10e 1427 Gene3D G3DSA:2.60.40.2700 2 92 9.0E-7 T 12-10-2018 AMJ96_CH01096 ee07fb9faa09f2dc0aff9cb1f48ab10e 1427 SUPERFAMILY SSF141072 743 860 4.05E-24 T 12-10-2018 IPR038081 CalX-like domain superfamily AMJ96_CH01096 ee07fb9faa09f2dc0aff9cb1f48ab10e 1427 Gene3D G3DSA:2.120.10.30 970 1112 3.9E-27 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMJ96_CH01096 ee07fb9faa09f2dc0aff9cb1f48ab10e 1427 Gene3D G3DSA:2.120.10.30 1129 1413 6.8E-49 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMJ96_CH01096 ee07fb9faa09f2dc0aff9cb1f48ab10e 1427 SUPERFAMILY SSF141072 861 981 1.96E-33 T 12-10-2018 IPR038081 CalX-like domain superfamily AMJ96_CH01096 ee07fb9faa09f2dc0aff9cb1f48ab10e 1427 SUPERFAMILY SSF50952 976 1415 1.2E-26 T 12-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AMJ96_CH01096 ee07fb9faa09f2dc0aff9cb1f48ab10e 1427 Pfam PF13313 Domain of unknown function (DUF4082) 586 727 1.2E-45 T 12-10-2018 IPR025141 Domain of unknown function DUF4082 AMJ96_CH01096 ee07fb9faa09f2dc0aff9cb1f48ab10e 1427 Pfam PF07995 Glucose / Sorbosone dehydrogenase 985 1070 1.4E-10 T 12-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase AMJ96_CH01096 ee07fb9faa09f2dc0aff9cb1f48ab10e 1427 Pfam PF07995 Glucose / Sorbosone dehydrogenase 1167 1402 5.0E-21 T 12-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase AMJ96_CH01994 1c758095c20f408933e193d7e5b7389b 429 Pfam PF00285 Citrate synthase, C-terminal domain 46 412 1.4E-132 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 AMJ96_CH01994 1c758095c20f408933e193d7e5b7389b 429 PIRSF PIRSF001369 37 429 8.5E-168 T 12-10-2018 IPR024176 Citrate synthase, bacterial-type AMJ96_CH01994 1c758095c20f408933e193d7e5b7389b 429 PRINTS PR00143 Citrate synthase signature 241 269 6.2E-56 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 AMJ96_CH01994 1c758095c20f408933e193d7e5b7389b 429 PRINTS PR00143 Citrate synthase signature 380 394 6.2E-56 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 AMJ96_CH01994 1c758095c20f408933e193d7e5b7389b 429 PRINTS PR00143 Citrate synthase signature 296 316 6.2E-56 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 AMJ96_CH01994 1c758095c20f408933e193d7e5b7389b 429 PRINTS PR00143 Citrate synthase signature 360 376 6.2E-56 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 AMJ96_CH01994 1c758095c20f408933e193d7e5b7389b 429 PRINTS PR00143 Citrate synthase signature 219 234 6.2E-56 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 AMJ96_CH01994 1c758095c20f408933e193d7e5b7389b 429 PRINTS PR00143 Citrate synthase signature 165 178 6.2E-56 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 AMJ96_CH01994 1c758095c20f408933e193d7e5b7389b 429 SUPERFAMILY SSF48256 3 429 2.75E-167 T 12-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 AMJ96_CH01994 1c758095c20f408933e193d7e5b7389b 429 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 12 423 2.4E-241 T 12-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 AMJ96_CH01994 1c758095c20f408933e193d7e5b7389b 429 Gene3D G3DSA:2.20.28.60 2 50 5.2E-17 T 12-10-2018 AMJ96_CH01994 1c758095c20f408933e193d7e5b7389b 429 Gene3D G3DSA:1.10.580.10 57 412 4.4E-145 T 12-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMJ96_CH01994 1c758095c20f408933e193d7e5b7389b 429 Gene3D G3DSA:1.10.230.10 268 377 4.4E-145 T 12-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain AMJ96_CH01994 1c758095c20f408933e193d7e5b7389b 429 ProSitePatterns PS00480 Citrate synthase signature. 303 315 - T 12-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMJ96_CH04213 9d60ab99f6a0b7cc75f0091caeac0143 469 PRINTS PR00415 Aconitase family signature 111 119 7.6E-49 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMJ96_CH04213 9d60ab99f6a0b7cc75f0091caeac0143 469 PRINTS PR00415 Aconitase family signature 289 303 7.6E-49 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMJ96_CH04213 9d60ab99f6a0b7cc75f0091caeac0143 469 PRINTS PR00415 Aconitase family signature 346 357 7.6E-49 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMJ96_CH04213 9d60ab99f6a0b7cc75f0091caeac0143 469 PRINTS PR00415 Aconitase family signature 198 211 7.6E-49 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMJ96_CH04213 9d60ab99f6a0b7cc75f0091caeac0143 469 PRINTS PR00415 Aconitase family signature 136 151 7.6E-49 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMJ96_CH04213 9d60ab99f6a0b7cc75f0091caeac0143 469 PRINTS PR00415 Aconitase family signature 85 98 7.6E-49 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMJ96_CH04213 9d60ab99f6a0b7cc75f0091caeac0143 469 PRINTS PR00415 Aconitase family signature 122 135 7.6E-49 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMJ96_CH04213 9d60ab99f6a0b7cc75f0091caeac0143 469 PRINTS PR00415 Aconitase family signature 212 225 7.6E-49 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMJ96_CH04213 9d60ab99f6a0b7cc75f0091caeac0143 469 PRINTS PR00415 Aconitase family signature 402 415 7.6E-49 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMJ96_CH04213 9d60ab99f6a0b7cc75f0091caeac0143 469 SUPERFAMILY SSF53732 4 468 2.09E-169 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 AMJ96_CH04213 9d60ab99f6a0b7cc75f0091caeac0143 469 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 3 469 60.798 T 12-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 AMJ96_CH04213 9d60ab99f6a0b7cc75f0091caeac0143 469 Pfam PF00330 Aconitase family (aconitate hydratase) 9 460 2.5E-162 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMJ96_CH04213 9d60ab99f6a0b7cc75f0091caeac0143 469 Gene3D G3DSA:3.30.499.20 6 289 2.8E-104 T 12-10-2018 AMJ96_CH04213 9d60ab99f6a0b7cc75f0091caeac0143 469 ProSitePatterns PS01244 Aconitase family signature 2. 402 415 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMJ96_CH04213 9d60ab99f6a0b7cc75f0091caeac0143 469 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 4 467 5.7E-244 T 12-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 AMJ96_CH04213 9d60ab99f6a0b7cc75f0091caeac0143 469 ProSitePatterns PS00450 Aconitase family signature 1. 342 358 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMJ96_CH04213 9d60ab99f6a0b7cc75f0091caeac0143 469 Gene3D G3DSA:3.30.499.10 328 469 4.5E-50 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AMJ96_PC00081 5de15233759a6ae74310bcd7772e376e 209 Pfam PF00226 DnaJ domain 3 61 4.6E-17 T 12-10-2018 IPR001623 DnaJ domain AMJ96_PC00081 5de15233759a6ae74310bcd7772e376e 209 SMART SM00271 2 56 2.2E-17 T 12-10-2018 IPR001623 DnaJ domain AMJ96_PC00081 5de15233759a6ae74310bcd7772e376e 209 SUPERFAMILY SSF46565 2 67 1.07E-22 T 12-10-2018 IPR036869 Chaperone J-domain superfamily AMJ96_PC00081 5de15233759a6ae74310bcd7772e376e 209 Gene3D G3DSA:1.10.287.110 1 77 1.1E-19 T 12-10-2018 IPR036869 Chaperone J-domain superfamily AMJ96_PC00081 5de15233759a6ae74310bcd7772e376e 209 ProSitePatterns PS00636 Nt-dnaJ domain signature. 41 60 - T 12-10-2018 IPR018253 DnaJ domain, conserved site AMJ96_PC00081 5de15233759a6ae74310bcd7772e376e 209 PRINTS PR00625 DnaJ domain signature 23 38 3.4E-9 T 12-10-2018 IPR001623 DnaJ domain AMJ96_PC00081 5de15233759a6ae74310bcd7772e376e 209 PRINTS PR00625 DnaJ domain signature 56 75 3.4E-9 T 12-10-2018 IPR001623 DnaJ domain AMJ96_PC00081 5de15233759a6ae74310bcd7772e376e 209 PRINTS PR00625 DnaJ domain signature 5 23 3.4E-9 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH01908 4286a37468db5ed123e52788c29ab9a8 219 SUPERFAMILY SSF46689 20 91 2.46E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH01908 4286a37468db5ed123e52788c29ab9a8 219 SUPERFAMILY SSF48498 106 218 9.64E-9 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH01908 4286a37468db5ed123e52788c29ab9a8 219 Gene3D G3DSA:1.10.357.10 21 217 2.0E-22 T 12-10-2018 AMJ96_CH01908 4286a37468db5ed123e52788c29ab9a8 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 53 76 1.2E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH01908 4286a37468db5ed123e52788c29ab9a8 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 45 1.2E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH01908 4286a37468db5ed123e52788c29ab9a8 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 32 78 2.2E-11 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH01688 a0a9f4b2434cf26cc62882d82b996b5c 296 SUPERFAMILY SSF75217 126 291 1.7E-41 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases AMJ96_CH01688 a0a9f4b2434cf26cc62882d82b996b5c 296 SMART SM00967 65 138 2.9E-13 T 12-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AMJ96_CH01688 a0a9f4b2434cf26cc62882d82b996b5c 296 Pfam PF00588 SpoU rRNA Methylase family 148 288 3.9E-33 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMJ96_CH01688 a0a9f4b2434cf26cc62882d82b996b5c 296 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 65 136 2.5E-12 T 12-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AMJ96_CH01688 a0a9f4b2434cf26cc62882d82b996b5c 296 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 63 289 1.1E-50 T 12-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 AMJ96_CH01688 a0a9f4b2434cf26cc62882d82b996b5c 296 Gene3D G3DSA:3.30.1330.30 57 133 6.1E-6 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like AMJ96_CH01688 a0a9f4b2434cf26cc62882d82b996b5c 296 SUPERFAMILY SSF55315 54 135 7.3E-13 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like AMJ96_CH01688 a0a9f4b2434cf26cc62882d82b996b5c 296 Gene3D G3DSA:3.40.1280.10 134 292 7.9E-44 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMJ96_CH00660 585c6fa0c368ed89915c944396a84266 494 Pfam PF13454 FAD-NAD(P)-binding 31 183 2.3E-32 T 12-10-2018 IPR038732 FAD-dependent urate hydroxylase HpyO, FAD/NAD(P)-binding domain AMJ96_CH00660 585c6fa0c368ed89915c944396a84266 494 SUPERFAMILY SSF51905 220 481 9.88E-6 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH00660 585c6fa0c368ed89915c944396a84266 494 SUPERFAMILY SSF51905 28 252 1.04E-18 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00197 ff76b5e312df355fe415fac977e9c39f 269 SMART SM00382 37 234 7.5E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00197 ff76b5e312df355fe415fac977e9c39f 269 Gene3D G3DSA:3.40.50.300 1 267 4.1E-65 T 12-10-2018 AMJ96_PC00197 ff76b5e312df355fe415fac977e9c39f 269 SUPERFAMILY SSF52540 3 255 6.96E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00197 ff76b5e312df355fe415fac977e9c39f 269 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00197 ff76b5e312df355fe415fac977e9c39f 269 Pfam PF00005 ABC transporter 28 184 7.8E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 782 797 3.4 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 544 559 0.23 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1440 1456 20.0 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1037 1054 3.0E-4 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 965 980 0.074 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 643 659 42.0 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1285 1301 0.025 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1457 1474 0.0067 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1112 1129 0.1 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1376 1391 0.036 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 608 624 66.0 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1362 1374 0.77 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 865 881 1.1 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 699 715 46.0 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 334 350 0.36 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 369 385 14.0 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1130 1146 0.051 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 433 449 2.4 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 351 368 0.0029 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 451 466 0.043 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 626 642 0.0029 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 882 898 0.15 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 947 963 4.5 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 526 542 0.0079 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 717 732 0.076 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 799 814 0.0049 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1203 1219 0.18 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Pfam PF08548 Peptidase M10 serralysin C terminal 225 394 3.0E-7 T 12-10-2018 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 366 384 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 SUPERFAMILY SSF51120 511 673 4.49E-21 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 SUPERFAMILY SSF51120 377 514 1.06E-12 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 SUPERFAMILY SSF51120 1358 1434 8.63E-12 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Gene3D G3DSA:2.150.10.10 1260 1350 4.1E-13 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Gene3D G3DSA:2.150.10.10 605 700 3.9E-17 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Gene3D G3DSA:2.150.10.10 1010 1105 9.7E-16 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Gene3D G3DSA:2.150.10.10 944 1009 1.6E-11 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Gene3D G3DSA:2.150.10.10 1435 1550 5.6E-17 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 447 465 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 PRINTS PR00313 NodO calcium binding signature 626 634 3.7E-10 T 12-10-2018 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 PRINTS PR00313 NodO calcium binding signature 532 543 3.7E-10 T 12-10-2018 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 PRINTS PR00313 NodO calcium binding signature 644 653 3.7E-10 T 12-10-2018 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 PRINTS PR00313 NodO calcium binding signature 635 643 3.7E-10 T 12-10-2018 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 357 375 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 SUPERFAMILY SSF51120 1195 1333 2.47E-13 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Gene3D G3DSA:2.150.10.10 1106 1194 7.4E-12 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Gene3D G3DSA:2.150.10.10 519 604 3.8E-14 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Gene3D G3DSA:2.150.10.10 1351 1434 3.5E-12 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 622 640 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 SUPERFAMILY SSF51120 697 832 7.2E-20 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 631 649 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Gene3D G3DSA:2.150.10.10 204 409 5.6E-50 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1281 1299 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 531 549 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 SUPERFAMILY SSF51120 1023 1192 9.72E-21 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Gene3D G3DSA:2.150.10.10 410 518 1.1E-13 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 SUPERFAMILY SSF51120 225 425 6.41E-19 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 SUPERFAMILY SSF51120 1439 1548 6.67E-18 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 SUPERFAMILY SSF51120 865 1026 4.06E-20 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Gene3D G3DSA:2.150.10.10 1195 1259 3.4E-6 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 795 813 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Gene3D G3DSA:3.40.390.10 24 163 3.1E-17 T 12-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 SUPERFAMILY SSF55486 3 223 2.94E-26 T 12-10-2018 AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1043 1061 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Gene3D G3DSA:2.150.10.10 746 836 9.2E-16 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 540 558 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMJ96_CH00768 c36a65dd3e52e93ee197d6a2099211cb 1550 Gene3D G3DSA:2.150.10.10 837 943 2.1E-15 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_PB00198 22f63015239b85b53e4b6b510491f61d 390 Gene3D G3DSA:2.40.128.260 187 355 2.2E-48 T 12-10-2018 AMJ96_PB00198 22f63015239b85b53e4b6b510491f61d 390 Gene3D G3DSA:1.10.1200.160 306 336 2.2E-48 T 12-10-2018 AMJ96_PB00198 22f63015239b85b53e4b6b510491f61d 390 Pfam PF03743 Bacterial conjugation TrbI-like protein 184 357 1.9E-53 T 12-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI AMJ96_PD00646 fe236c05a851dd8a536e5b49b0ad66d8 232 SMART SM00345 24 82 2.7E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00646 fe236c05a851dd8a536e5b49b0ad66d8 232 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 74 8.2E-12 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00646 fe236c05a851dd8a536e5b49b0ad66d8 232 Gene3D G3DSA:1.10.10.10 7 83 2.7E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00646 fe236c05a851dd8a536e5b49b0ad66d8 232 Pfam PF07729 FCD domain 92 214 1.0E-15 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00646 fe236c05a851dd8a536e5b49b0ad66d8 232 SMART SM00895 92 216 8.8E-10 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00646 fe236c05a851dd8a536e5b49b0ad66d8 232 SUPERFAMILY SSF46785 17 93 4.76E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00646 fe236c05a851dd8a536e5b49b0ad66d8 232 SUPERFAMILY SSF48008 90 223 3.14E-17 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00646 fe236c05a851dd8a536e5b49b0ad66d8 232 Gene3D G3DSA:1.20.120.530 88 225 7.9E-22 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH03755 2527c48fbe830480878432d0020e2c76 112 SUPERFAMILY SSF54909 1 110 1.15E-27 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH03755 2527c48fbe830480878432d0020e2c76 112 Pfam PF03795 YCII-related domain 1 108 1.1E-16 T 12-10-2018 IPR005545 YCII-related AMJ96_CH03755 2527c48fbe830480878432d0020e2c76 112 Gene3D G3DSA:3.30.70.1060 1 112 2.6E-31 T 12-10-2018 AMJ96_CH02488 a0db5feb1d12feec86d663362598b832 113 Pfam PF12840 Helix-turn-helix domain 10 68 8.1E-14 T 12-10-2018 AMJ96_CH02488 a0db5feb1d12feec86d663362598b832 113 SUPERFAMILY SSF46785 7 101 3.76E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02488 a0db5feb1d12feec86d663362598b832 113 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 12 27 2.9E-8 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH02488 a0db5feb1d12feec86d663362598b832 113 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 59 74 2.9E-8 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH02488 a0db5feb1d12feec86d663362598b832 113 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 44 59 2.9E-8 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH02488 a0db5feb1d12feec86d663362598b832 113 Gene3D G3DSA:1.10.10.10 1 110 2.7E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02488 a0db5feb1d12feec86d663362598b832 113 SMART SM00418 10 91 1.1E-13 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH00178 c5ea9d954fe64251c3670abed950dd59 595 SUPERFAMILY SSF52540 342 587 1.49E-92 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00178 c5ea9d954fe64251c3670abed950dd59 595 Pfam PF00005 ABC transporter 367 516 5.9E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00178 c5ea9d954fe64251c3670abed950dd59 595 SMART SM00382 376 562 2.1E-19 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00178 c5ea9d954fe64251c3670abed950dd59 595 Gene3D G3DSA:1.20.1560.10 3 338 2.5E-63 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH00178 c5ea9d954fe64251c3670abed950dd59 595 SUPERFAMILY SSF90123 22 340 6.67E-62 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH00178 c5ea9d954fe64251c3670abed950dd59 595 Pfam PF00664 ABC transporter transmembrane region 37 298 9.8E-36 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_CH00178 c5ea9d954fe64251c3670abed950dd59 595 Gene3D G3DSA:3.40.50.300 343 594 2.7E-95 T 12-10-2018 AMJ96_CH00178 c5ea9d954fe64251c3670abed950dd59 595 ProSitePatterns PS00211 ABC transporters family signature. 488 502 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PA00077 dcf2f6b4e2c80ea34ebfd081fc33a081 429 Gene3D G3DSA:3.30.565.10 267 421 1.9E-32 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PA00077 dcf2f6b4e2c80ea34ebfd081fc33a081 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 364 374 4.5E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PA00077 dcf2f6b4e2c80ea34ebfd081fc33a081 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 397 4.5E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PA00077 dcf2f6b4e2c80ea34ebfd081fc33a081 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 346 360 4.5E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PA00077 dcf2f6b4e2c80ea34ebfd081fc33a081 429 SMART SM00304 144 199 2.0E-5 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PA00077 dcf2f6b4e2c80ea34ebfd081fc33a081 429 SMART SM00388 200 263 2.1E-12 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PA00077 dcf2f6b4e2c80ea34ebfd081fc33a081 429 SUPERFAMILY SSF47384 183 263 6.28E-14 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_PA00077 dcf2f6b4e2c80ea34ebfd081fc33a081 429 Pfam PF00512 His Kinase A (phospho-acceptor) domain 201 263 2.6E-13 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PA00077 dcf2f6b4e2c80ea34ebfd081fc33a081 429 SUPERFAMILY SSF158472 144 197 6.8E-6 T 12-10-2018 AMJ96_PA00077 dcf2f6b4e2c80ea34ebfd081fc33a081 429 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 314 417 2.9E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PA00077 dcf2f6b4e2c80ea34ebfd081fc33a081 429 SUPERFAMILY SSF55874 253 420 9.82E-35 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PA00077 dcf2f6b4e2c80ea34ebfd081fc33a081 429 Gene3D G3DSA:1.10.287.130 148 263 4.2E-25 T 12-10-2018 AMJ96_PA00077 dcf2f6b4e2c80ea34ebfd081fc33a081 429 SMART SM00387 309 419 9.2E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00382 961625ee432d8e1abd122b4f0217db5f 85 Pfam PF06620 Protein of unknown function (DUF1150) 10 85 1.4E-31 T 12-10-2018 IPR009531 Protein of unknown function DUF1150 AMJ96_PD00610 b7b5e33bee42b249cabc78ea867e2187 250 SUPERFAMILY SSF48008 102 236 3.4E-23 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00610 b7b5e33bee42b249cabc78ea867e2187 250 Pfam PF07729 FCD domain 106 228 2.7E-21 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00610 b7b5e33bee42b249cabc78ea867e2187 250 SUPERFAMILY SSF46785 15 92 3.83E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00610 b7b5e33bee42b249cabc78ea867e2187 250 SMART SM00345 24 83 2.8E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00610 b7b5e33bee42b249cabc78ea867e2187 250 Gene3D G3DSA:1.10.10.10 14 89 7.9E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00610 b7b5e33bee42b249cabc78ea867e2187 250 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 57 73 4.6E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00610 b7b5e33bee42b249cabc78ea867e2187 250 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 57 4.6E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00610 b7b5e33bee42b249cabc78ea867e2187 250 SMART SM00895 105 230 2.7E-17 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00610 b7b5e33bee42b249cabc78ea867e2187 250 Gene3D G3DSA:1.20.120.530 99 239 1.5E-25 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00610 b7b5e33bee42b249cabc78ea867e2187 250 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 83 9.5E-18 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00208 69933d8e7b53a2eee010fd5a857264f9 252 TIGRFAM TIGR02431 pcaR_pcaU: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family 4 250 6.7E-101 T 12-10-2018 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR GO:0003677|GO:0045893|GO:0046278 AMJ96_PC00208 69933d8e7b53a2eee010fd5a857264f9 252 Pfam PF01614 Bacterial transcriptional regulator 122 246 1.4E-32 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal AMJ96_PC00208 69933d8e7b53a2eee010fd5a857264f9 252 SMART SM00346 7 95 2.9E-21 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMJ96_PC00208 69933d8e7b53a2eee010fd5a857264f9 252 Gene3D G3DSA:3.30.450.40 76 251 4.5E-54 T 12-10-2018 IPR029016 GAF-like domain superfamily AMJ96_PC00208 69933d8e7b53a2eee010fd5a857264f9 252 Gene3D G3DSA:1.10.10.10 2 75 2.6E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00208 69933d8e7b53a2eee010fd5a857264f9 252 SUPERFAMILY SSF46785 8 78 1.11E-11 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00208 69933d8e7b53a2eee010fd5a857264f9 252 Pfam PF09339 IclR helix-turn-helix domain 11 60 1.3E-13 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMJ96_PC00208 69933d8e7b53a2eee010fd5a857264f9 252 SUPERFAMILY SSF55781 71 249 4.38E-47 T 12-10-2018 AMJ96_CH03159 4cf047ab0c6148cf816ea2aa02f241e2 253 SUPERFAMILY SSF63817 98 234 3.34E-19 T 12-10-2018 IPR023365 Sortase domain superfamily AMJ96_CH03159 4cf047ab0c6148cf816ea2aa02f241e2 253 TIGRFAM TIGR03784 marine_sortase: sortase, marine proteobacterial type 60 230 5.5E-64 T 12-10-2018 IPR022445 Sortase, proteobacterial type AMJ96_CH03159 4cf047ab0c6148cf816ea2aa02f241e2 253 Gene3D G3DSA:2.40.260.10 104 237 8.5E-28 T 12-10-2018 IPR023365 Sortase domain superfamily AMJ96_CH03159 4cf047ab0c6148cf816ea2aa02f241e2 253 Pfam PF04203 Sortase family 113 233 7.0E-19 T 12-10-2018 IPR005754 Sortase family AMJ96_PA00185 0c451b4fe586fd77f2688f0dc6e9005c 684 SUPERFAMILY SSF52210 132 290 3.14E-29 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMJ96_PA00185 0c451b4fe586fd77f2688f0dc6e9005c 684 Pfam PF13380 CoA binding domain 14 134 4.0E-20 T 12-10-2018 IPR003781 CoA-binding GO:0048037 AMJ96_PA00185 0c451b4fe586fd77f2688f0dc6e9005c 684 Gene3D G3DSA:3.30.470.20 478 680 6.7E-54 T 12-10-2018 AMJ96_PA00185 0c451b4fe586fd77f2688f0dc6e9005c 684 SUPERFAMILY SSF56059 480 680 9.19E-29 T 12-10-2018 AMJ96_PA00185 0c451b4fe586fd77f2688f0dc6e9005c 684 SUPERFAMILY SSF52210 297 458 2.38E-21 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMJ96_PA00185 0c451b4fe586fd77f2688f0dc6e9005c 684 Pfam PF13549 ATP-grasp domain 477 681 1.0E-42 T 12-10-2018 AMJ96_PA00185 0c451b4fe586fd77f2688f0dc6e9005c 684 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 155 289 3.9E-33 T 12-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain AMJ96_PA00185 0c451b4fe586fd77f2688f0dc6e9005c 684 Gene3D G3DSA:3.40.50.720 4 129 1.3E-25 T 12-10-2018 AMJ96_PA00185 0c451b4fe586fd77f2688f0dc6e9005c 684 Gene3D G3DSA:3.40.50.261 146 291 2.9E-33 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMJ96_PA00185 0c451b4fe586fd77f2688f0dc6e9005c 684 SUPERFAMILY SSF51735 2 135 1.35E-25 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PA00185 0c451b4fe586fd77f2688f0dc6e9005c 684 Gene3D G3DSA:3.40.50.261 294 457 5.1E-11 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMJ96_PA00185 0c451b4fe586fd77f2688f0dc6e9005c 684 Gene3D G3DSA:3.30.1490.20 497 562 6.7E-54 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMJ96_PA00185 0c451b4fe586fd77f2688f0dc6e9005c 684 SMART SM00881 9 99 3.4E-18 T 12-10-2018 IPR003781 CoA-binding GO:0048037 AMJ96_CH01963 d841e21f9209ec6043bf6cf58bf80ebf 384 SUPERFAMILY SSF51905 6 352 2.37E-47 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01963 d841e21f9209ec6043bf6cf58bf80ebf 384 Gene3D G3DSA:3.30.9.30 38 348 1.3E-89 T 12-10-2018 AMJ96_CH01963 d841e21f9209ec6043bf6cf58bf80ebf 384 Gene3D G3DSA:3.50.50.60 7 340 1.3E-89 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01963 d841e21f9209ec6043bf6cf58bf80ebf 384 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 308 2.9E-18 T 12-10-2018 AMJ96_CH01963 d841e21f9209ec6043bf6cf58bf80ebf 384 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 142 157 2.9E-18 T 12-10-2018 AMJ96_CH01963 d841e21f9209ec6043bf6cf58bf80ebf 384 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 277 292 2.9E-18 T 12-10-2018 AMJ96_CH01963 d841e21f9209ec6043bf6cf58bf80ebf 384 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 2.9E-18 T 12-10-2018 AMJ96_CH01963 d841e21f9209ec6043bf6cf58bf80ebf 384 Pfam PF01494 FAD binding domain 143 335 3.4E-13 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 AMJ96_CH01963 d841e21f9209ec6043bf6cf58bf80ebf 384 SUPERFAMILY SSF54373 167 267 7.85E-8 T 12-10-2018 AMJ96_CH01963 d841e21f9209ec6043bf6cf58bf80ebf 384 Pfam PF13450 NAD(P)-binding Rossmann-like domain 8 38 2.1E-6 T 12-10-2018 AMJ96_CH00818 86c43e76e70b9d28031a8bf07e7c05a1 494 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 13 491 82.598 T 12-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AMJ96_CH00818 86c43e76e70b9d28031a8bf07e7c05a1 494 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 13 460 1.7E-196 T 12-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AMJ96_CH00818 86c43e76e70b9d28031a8bf07e7c05a1 494 PIRSF PIRSF000130 2 492 9.1E-204 T 12-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AMJ96_CH00818 86c43e76e70b9d28031a8bf07e7c05a1 494 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 13 478 5.9E-156 T 12-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 AMJ96_CH00818 86c43e76e70b9d28031a8bf07e7c05a1 494 SMART SM00116 162 210 5.0E-8 T 12-10-2018 IPR000644 CBS domain AMJ96_CH00818 86c43e76e70b9d28031a8bf07e7c05a1 494 SMART SM00116 101 149 4.1E-12 T 12-10-2018 IPR000644 CBS domain AMJ96_CH00818 86c43e76e70b9d28031a8bf07e7c05a1 494 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 299 311 - T 12-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 AMJ96_CH00818 86c43e76e70b9d28031a8bf07e7c05a1 494 SUPERFAMILY SSF51412 12 482 3.66E-120 T 12-10-2018 AMJ96_CH00818 86c43e76e70b9d28031a8bf07e7c05a1 494 SMART SM01240 12 478 0.0 T 12-10-2018 AMJ96_CH00818 86c43e76e70b9d28031a8bf07e7c05a1 494 SUPERFAMILY SSF54631 98 208 9.98E-32 T 12-10-2018 AMJ96_CH00818 86c43e76e70b9d28031a8bf07e7c05a1 494 Gene3D G3DSA:3.20.20.70 5 491 2.2E-213 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH00818 86c43e76e70b9d28031a8bf07e7c05a1 494 Pfam PF00571 CBS domain 98 147 1.9E-12 T 12-10-2018 IPR000644 CBS domain AMJ96_CH00818 86c43e76e70b9d28031a8bf07e7c05a1 494 Pfam PF00571 CBS domain 155 205 1.7E-7 T 12-10-2018 IPR000644 CBS domain AMJ96_CH01951 4103de9ad83826f84b2e06cc92a90d69 101 Pfam PF04800 ETC complex I subunit conserved region 3 96 8.3E-32 T 12-10-2018 IPR006885 NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial GO:0016651|GO:0022900 AMJ96_CH01951 4103de9ad83826f84b2e06cc92a90d69 101 Gene3D G3DSA:3.30.160.190 1 80 3.4E-32 T 12-10-2018 IPR038532 NADH dehydrogenase ubiquinone Fe-S protein 4-like superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH02583 9fc8d904661b2ce33523ca7cdfeb66da 330 Pfam PF02733 Dak1 domain 17 325 1.7E-112 T 12-10-2018 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AMJ96_CH02583 9fc8d904661b2ce33523ca7cdfeb66da 330 Gene3D G3DSA:3.40.50.10440 11 182 1.3E-58 T 12-10-2018 AMJ96_CH02583 9fc8d904661b2ce33523ca7cdfeb66da 330 Gene3D G3DSA:3.30.1180.20 183 330 1.5E-45 T 12-10-2018 AMJ96_CH02583 9fc8d904661b2ce33523ca7cdfeb66da 330 SUPERFAMILY SSF82549 11 329 2.62E-108 T 12-10-2018 AMJ96_CH03023 157f3e2d02bea0af150db05815417ff5 341 PIRSF PIRSF004486 16 317 3.7E-98 T 12-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AMJ96_CH03023 157f3e2d02bea0af150db05815417ff5 341 Pfam PF01795 MraW methylase family 17 314 2.9E-94 T 12-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AMJ96_CH03023 157f3e2d02bea0af150db05815417ff5 341 SUPERFAMILY SSF53335 19 315 2.54E-47 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH03023 157f3e2d02bea0af150db05815417ff5 341 Gene3D G3DSA:3.40.50.150 19 312 1.6E-96 T 12-10-2018 AMJ96_CH03023 157f3e2d02bea0af150db05815417ff5 341 Gene3D G3DSA:1.10.150.170 120 222 1.6E-96 T 12-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 AMJ96_CH03023 157f3e2d02bea0af150db05815417ff5 341 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 18 315 1.3E-89 T 12-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AMJ96_CH03023 157f3e2d02bea0af150db05815417ff5 341 SUPERFAMILY SSF81799 122 221 1.96E-32 T 12-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 AMJ96_CH03023 157f3e2d02bea0af150db05815417ff5 341 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 19 316 35.336 T 12-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 AMJ96_CH02551 4e5e0a087ff6b731ab47340a0553f17f 435 SUPERFAMILY SSF52317 243 428 4.59E-28 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH02551 4e5e0a087ff6b731ab47340a0553f17f 435 Gene3D G3DSA:3.40.50.880 250 426 1.8E-9 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH02551 4e5e0a087ff6b731ab47340a0553f17f 435 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 243 428 1.5E-34 T 12-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 AMJ96_CH02551 4e5e0a087ff6b731ab47340a0553f17f 435 Hamap MF_00027 Hydrogenobyrinate a,c-diamide synthase [cobB]. 1 433 40.156 T 12-10-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 AMJ96_CH02551 4e5e0a087ff6b731ab47340a0553f17f 435 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 186 1.8E-18 T 12-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AMJ96_CH02551 4e5e0a087ff6b731ab47340a0553f17f 435 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 5 427 4.4E-96 T 12-10-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 AMJ96_CH02551 4e5e0a087ff6b731ab47340a0553f17f 435 SUPERFAMILY SSF52540 1 194 5.32E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02551 4e5e0a087ff6b731ab47340a0553f17f 435 Gene3D G3DSA:3.40.50.300 3 182 1.9E-23 T 12-10-2018 AMJ96_CH04374 4f2313f8b225f693e0fdb6f8e106208b 346 Pfam PF06144 DNA polymerase III, delta subunit 24 192 3.8E-8 T 12-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 AMJ96_CH04374 4f2313f8b225f693e0fdb6f8e106208b 346 SUPERFAMILY SSF52540 17 212 6.37E-11 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04374 4f2313f8b225f693e0fdb6f8e106208b 346 Gene3D G3DSA:1.20.272.10 219 317 4.7E-6 T 12-10-2018 AMJ96_CH04374 4f2313f8b225f693e0fdb6f8e106208b 346 SUPERFAMILY SSF48019 216 335 4.08E-14 T 12-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AMJ96_CH04374 4f2313f8b225f693e0fdb6f8e106208b 346 Gene3D G3DSA:3.40.50.300 14 137 9.6E-10 T 12-10-2018 AMJ96_CH04374 4f2313f8b225f693e0fdb6f8e106208b 346 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 22 335 4.3E-46 T 12-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 AMJ96_CH04374 4f2313f8b225f693e0fdb6f8e106208b 346 Gene3D G3DSA:1.10.8.60 146 214 3.2E-5 T 12-10-2018 AMJ96_CH02038 6084343f7631521796ee2cbe571d20e9 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.5E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02038 6084343f7631521796ee2cbe571d20e9 312 SUPERFAMILY SSF53850 91 301 4.89E-31 T 12-10-2018 AMJ96_CH02038 6084343f7631521796ee2cbe571d20e9 312 Gene3D G3DSA:1.10.10.10 3 93 9.0E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02038 6084343f7631521796ee2cbe571d20e9 312 Gene3D G3DSA:3.40.190.290 94 305 3.1E-35 T 12-10-2018 AMJ96_CH02038 6084343f7631521796ee2cbe571d20e9 312 SUPERFAMILY SSF46785 4 87 5.44E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02038 6084343f7631521796ee2cbe571d20e9 312 Pfam PF03466 LysR substrate binding domain 90 296 1.2E-32 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH02038 6084343f7631521796ee2cbe571d20e9 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 3.8E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02038 6084343f7631521796ee2cbe571d20e9 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 3.8E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02038 6084343f7631521796ee2cbe571d20e9 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 3.8E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01495 881ea50e62247ec9d8ff7b0530d39850 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 12-10-2018 IPR006162 Phosphopantetheine attachment site AMJ96_CH01495 881ea50e62247ec9d8ff7b0530d39850 78 SMART SM00823 Phosphopantetheine attachment site 5 63 0.0025 T 12-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AMJ96_CH01495 881ea50e62247ec9d8ff7b0530d39850 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.03 T 12-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AMJ96_CH01495 881ea50e62247ec9d8ff7b0530d39850 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 76 4.3E-32 T 12-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AMJ96_CH01495 881ea50e62247ec9d8ff7b0530d39850 78 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 34 73 1.0E-12 T 12-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AMJ96_CH01495 881ea50e62247ec9d8ff7b0530d39850 78 SUPERFAMILY SSF47336 2 76 2.36E-22 T 12-10-2018 IPR036736 ACP-like superfamily AMJ96_CH01495 881ea50e62247ec9d8ff7b0530d39850 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 1.3E-13 T 12-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMJ96_CH01495 881ea50e62247ec9d8ff7b0530d39850 78 Gene3D G3DSA:1.10.1200.10 1 78 9.0E-29 T 12-10-2018 IPR036736 ACP-like superfamily AMJ96_PA00069 1abe5d87bab5f9a86d5d173cb5a91d72 580 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 128 138 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMJ96_PA00069 1abe5d87bab5f9a86d5d173cb5a91d72 580 Pfam PF00920 Dehydratase family 45 561 5.5E-177 T 12-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMJ96_PA00069 1abe5d87bab5f9a86d5d173cb5a91d72 580 SUPERFAMILY SSF52016 382 566 1.26E-58 T 12-10-2018 AMJ96_PA00069 1abe5d87bab5f9a86d5d173cb5a91d72 580 Gene3D G3DSA:3.50.30.80 381 536 8.1E-49 T 12-10-2018 AMJ96_PA00069 1abe5d87bab5f9a86d5d173cb5a91d72 580 SUPERFAMILY SSF143975 4 380 3.27E-122 T 12-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMJ96_CH03693 90b8b3f7c6d60ccb76fca7b244a73173 392 TIGRFAM TIGR01365 serC_2: phosphoserine aminotransferase 10 382 3.8E-211 T 12-10-2018 IPR006271 Phosphoserine aminotransferase, Methanosarcina-type GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52 AMJ96_CH03693 90b8b3f7c6d60ccb76fca7b244a73173 392 Gene3D G3DSA:3.90.1150.10 268 382 6.6E-11 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH03693 90b8b3f7c6d60ccb76fca7b244a73173 392 PIRSF PIRSF000525 19 384 1.3E-53 T 12-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 AMJ96_CH03693 90b8b3f7c6d60ccb76fca7b244a73173 392 Pfam PF00266 Aminotransferase class-V 140 316 1.3E-6 T 12-10-2018 IPR000192 Aminotransferase class V domain AMJ96_CH03693 90b8b3f7c6d60ccb76fca7b244a73173 392 SUPERFAMILY SSF53383 11 381 4.68E-73 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH03693 90b8b3f7c6d60ccb76fca7b244a73173 392 Gene3D G3DSA:3.40.640.10 29 265 3.0E-41 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_PC00188 3702d367c31bba5428374901f19b252a 330 SUPERFAMILY SSF161098 89 315 5.49E-53 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00188 3702d367c31bba5428374901f19b252a 330 Gene3D G3DSA:1.10.3720.10 84 329 1.2E-57 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00188 3702d367c31bba5428374901f19b252a 330 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 325 1.5E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00408 7a8c6bfc3ff0de683a95c9bdd6839d73 760 Gene3D G3DSA:3.40.50.10750 581 732 9.7E-93 T 12-10-2018 AMJ96_CH00408 7a8c6bfc3ff0de683a95c9bdd6839d73 760 Pfam PF00390 Malic enzyme, N-terminal domain 29 161 2.6E-26 T 12-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMJ96_CH00408 7a8c6bfc3ff0de683a95c9bdd6839d73 760 PIRSF PIRSF036684 8 760 0.0 T 12-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 AMJ96_CH00408 7a8c6bfc3ff0de683a95c9bdd6839d73 760 ProSitePatterns PS00331 Malic enzymes signature. 169 185 - T 12-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 AMJ96_CH00408 7a8c6bfc3ff0de683a95c9bdd6839d73 760 SUPERFAMILY SSF53659 441 757 6.99E-88 T 12-10-2018 AMJ96_CH00408 7a8c6bfc3ff0de683a95c9bdd6839d73 760 SMART SM00919 173 410 1.3E-136 T 12-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AMJ96_CH00408 7a8c6bfc3ff0de683a95c9bdd6839d73 760 Gene3D G3DSA:3.40.50.720 171 447 1.7E-83 T 12-10-2018 AMJ96_CH00408 7a8c6bfc3ff0de683a95c9bdd6839d73 760 Pfam PF03949 Malic enzyme, NAD binding domain 175 369 7.3E-24 T 12-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AMJ96_CH00408 7a8c6bfc3ff0de683a95c9bdd6839d73 760 Gene3D G3DSA:3.40.50.10950 448 756 9.7E-93 T 12-10-2018 AMJ96_CH00408 7a8c6bfc3ff0de683a95c9bdd6839d73 760 SUPERFAMILY SSF53223 19 171 1.51E-52 T 12-10-2018 AMJ96_CH00408 7a8c6bfc3ff0de683a95c9bdd6839d73 760 SMART SM01274 28 161 8.1E-79 T 12-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMJ96_CH00408 7a8c6bfc3ff0de683a95c9bdd6839d73 760 SUPERFAMILY SSF51735 173 462 1.53E-84 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00408 7a8c6bfc3ff0de683a95c9bdd6839d73 760 Pfam PF01515 Phosphate acetyl/butaryl transferase 441 756 7.1E-103 T 12-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMJ96_CH00408 7a8c6bfc3ff0de683a95c9bdd6839d73 760 Gene3D G3DSA:3.40.50.10380 6 170 9.4E-65 T 12-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 AMJ96_CH00778 9e058b6fc2dd75b2197fd23570d94eca 338 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00778 9e058b6fc2dd75b2197fd23570d94eca 338 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 233 299 5.3E-19 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_CH00778 9e058b6fc2dd75b2197fd23570d94eca 338 SUPERFAMILY SSF52540 3 252 3.01E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00778 9e058b6fc2dd75b2197fd23570d94eca 338 Gene3D G3DSA:3.40.50.300 2 307 1.8E-87 T 12-10-2018 AMJ96_CH00778 9e058b6fc2dd75b2197fd23570d94eca 338 Pfam PF00005 ABC transporter 24 181 6.1E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00778 9e058b6fc2dd75b2197fd23570d94eca 338 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 297 2.5E-18 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_CH00778 9e058b6fc2dd75b2197fd23570d94eca 338 SMART SM00382 32 230 2.2E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00251 f56ffc383857d1e140781a21da7ff0f2 360 SUPERFAMILY SSF50331 236 359 2.26E-25 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_PD00251 f56ffc383857d1e140781a21da7ff0f2 360 Gene3D G3DSA:2.40.50.140 289 344 2.0E-32 T 12-10-2018 AMJ96_PD00251 f56ffc383857d1e140781a21da7ff0f2 360 Pfam PF00005 ABC transporter 20 161 8.8E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00251 f56ffc383857d1e140781a21da7ff0f2 360 SMART SM00382 28 219 2.7E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00251 f56ffc383857d1e140781a21da7ff0f2 360 Gene3D G3DSA:2.40.50.940 222 353 2.0E-32 T 12-10-2018 AMJ96_PD00251 f56ffc383857d1e140781a21da7ff0f2 360 SUPERFAMILY SSF52540 4 243 3.99E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00251 f56ffc383857d1e140781a21da7ff0f2 360 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00251 f56ffc383857d1e140781a21da7ff0f2 360 Gene3D G3DSA:3.40.50.300 4 221 4.4E-65 T 12-10-2018 AMJ96_PD00251 f56ffc383857d1e140781a21da7ff0f2 360 Pfam PF08402 TOBE domain 282 352 2.4E-5 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_CH01664 5da79bca97cb7c1eb39d04896fb6d65f 123 SUPERFAMILY SSF52172 3 121 6.97E-35 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH01664 5da79bca97cb7c1eb39d04896fb6d65f 123 Gene3D G3DSA:3.40.50.12740 1 123 1.4E-40 T 12-10-2018 AMJ96_CH01664 5da79bca97cb7c1eb39d04896fb6d65f 123 Pfam PF00072 Response regulator receiver domain 5 116 7.9E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01664 5da79bca97cb7c1eb39d04896fb6d65f 123 SMART SM00448 3 116 6.2E-33 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01642 3a30c1ec37d80b5c97d94f187f0a97aa 693 Gene3D G3DSA:3.30.70.20 134 213 2.9E-7 T 12-10-2018 AMJ96_CH01642 3a30c1ec37d80b5c97d94f187f0a97aa 693 SUPERFAMILY SSF54292 1 68 2.71E-17 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMJ96_CH01642 3a30c1ec37d80b5c97d94f187f0a97aa 693 Pfam PF00384 Molybdopterin oxidoreductase 280 603 2.2E-68 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01642 3a30c1ec37d80b5c97d94f187f0a97aa 693 Gene3D G3DSA:3.40.50.740 540 650 3.2E-14 T 12-10-2018 AMJ96_CH01642 3a30c1ec37d80b5c97d94f187f0a97aa 693 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 92 131 5.2E-18 T 12-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01642 3a30c1ec37d80b5c97d94f187f0a97aa 693 Pfam PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal 637 680 1.2E-15 T 12-10-2018 IPR015405 NADH-quinone oxidoreductase, chain G, C-terminal GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01642 3a30c1ec37d80b5c97d94f187f0a97aa 693 SUPERFAMILY SSF54862 84 220 6.7E-39 T 12-10-2018 AMJ96_CH01642 3a30c1ec37d80b5c97d94f187f0a97aa 693 Gene3D G3DSA:3.40.50.740 281 422 2.9E-6 T 12-10-2018 AMJ96_CH01642 3a30c1ec37d80b5c97d94f187f0a97aa 693 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 154 164 - T 12-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01642 3a30c1ec37d80b5c97d94f187f0a97aa 693 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 601 1.9E-220 T 12-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01642 3a30c1ec37d80b5c97d94f187f0a97aa 693 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 107 119 - T 12-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01642 3a30c1ec37d80b5c97d94f187f0a97aa 693 Gene3D G3DSA:3.40.50.1220 434 539 2.5E-7 T 12-10-2018 AMJ96_CH01642 3a30c1ec37d80b5c97d94f187f0a97aa 693 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 69 1.3E-11 T 12-10-2018 AMJ96_CH01642 3a30c1ec37d80b5c97d94f187f0a97aa 693 Gene3D G3DSA:3.10.20.740 1 133 4.5E-33 T 12-10-2018 AMJ96_CH01642 3a30c1ec37d80b5c97d94f187f0a97aa 693 SMART SM00929 92 132 3.1E-22 T 12-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01642 3a30c1ec37d80b5c97d94f187f0a97aa 693 SUPERFAMILY SSF53706 222 635 9.91E-101 T 12-10-2018 AMJ96_CH03066 8efac6fadbd02de73507b192b59082c9 353 Gene3D G3DSA:3.30.360.10 126 353 3.5E-20 T 12-10-2018 AMJ96_CH03066 8efac6fadbd02de73507b192b59082c9 353 SUPERFAMILY SSF51735 4 152 1.93E-40 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03066 8efac6fadbd02de73507b192b59082c9 353 SUPERFAMILY SSF55347 127 279 1.18E-13 T 12-10-2018 AMJ96_CH03066 8efac6fadbd02de73507b192b59082c9 353 Gene3D G3DSA:3.40.50.720 2 125 4.4E-30 T 12-10-2018 AMJ96_CH03066 8efac6fadbd02de73507b192b59082c9 353 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 7 123 3.3E-25 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_CH04154 0201b15526a47a07fabe85e68e0fc611 309 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 5 299 35.776 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMJ96_CH04154 0201b15526a47a07fabe85e68e0fc611 309 Gene3D G3DSA:3.40.190.10 7 212 2.3E-75 T 12-10-2018 AMJ96_CH04154 0201b15526a47a07fabe85e68e0fc611 309 SUPERFAMILY SSF54782 222 308 4.18E-21 T 12-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMJ96_CH04154 0201b15526a47a07fabe85e68e0fc611 309 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 7 298 2.9E-100 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMJ96_CH04154 0201b15526a47a07fabe85e68e0fc611 309 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 233 249 - T 12-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMJ96_CH04154 0201b15526a47a07fabe85e68e0fc611 309 Gene3D G3DSA:3.30.160.40 224 307 7.3E-23 T 12-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMJ96_CH04154 0201b15526a47a07fabe85e68e0fc611 309 PIRSF PIRSF001438 1 309 1.0E-105 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMJ96_CH04154 0201b15526a47a07fabe85e68e0fc611 309 SUPERFAMILY SSF53850 5 220 9.41E-74 T 12-10-2018 AMJ96_CH04154 0201b15526a47a07fabe85e68e0fc611 309 Gene3D G3DSA:3.40.190.10 105 204 2.3E-75 T 12-10-2018 AMJ96_CH04154 0201b15526a47a07fabe85e68e0fc611 309 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 7 214 3.7E-71 T 12-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMJ96_CH04154 0201b15526a47a07fabe85e68e0fc611 309 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 229 295 2.2E-13 T 12-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMJ96_CH04154 0201b15526a47a07fabe85e68e0fc611 309 PRINTS PR00151 Porphobilinogen deaminase signature 232 249 8.0E-39 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMJ96_CH04154 0201b15526a47a07fabe85e68e0fc611 309 PRINTS PR00151 Porphobilinogen deaminase signature 145 162 8.0E-39 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMJ96_CH04154 0201b15526a47a07fabe85e68e0fc611 309 PRINTS PR00151 Porphobilinogen deaminase signature 126 143 8.0E-39 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMJ96_CH04154 0201b15526a47a07fabe85e68e0fc611 309 PRINTS PR00151 Porphobilinogen deaminase signature 47 67 8.0E-39 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMJ96_CH04154 0201b15526a47a07fabe85e68e0fc611 309 PRINTS PR00151 Porphobilinogen deaminase signature 78 97 8.0E-39 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMJ96_CH04358 40bd55e8ec2cdeef3deb6a9247165368 213 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 89 109 - T 12-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMJ96_CH04358 40bd55e8ec2cdeef3deb6a9247165368 213 SUPERFAMILY SSF53056 5 209 1.19E-62 T 12-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 AMJ96_CH04358 40bd55e8ec2cdeef3deb6a9247165368 213 SMART SM00947 32 202 1.3E-66 T 12-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMJ96_CH04358 40bd55e8ec2cdeef3deb6a9247165368 213 Pfam PF00484 Carbonic anhydrase 39 198 2.0E-49 T 12-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMJ96_CH04358 40bd55e8ec2cdeef3deb6a9247165368 213 Gene3D G3DSA:3.40.1050.10 2 209 7.1E-67 T 12-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 AMJ96_CH04184 f0fa215fcdebcb208f6470a375c18f19 214 Gene3D G3DSA:3.40.50.1110 29 210 5.8E-63 T 12-10-2018 IPR036514 SGNH hydrolase superfamily AMJ96_CH04184 f0fa215fcdebcb208f6470a375c18f19 214 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 33 190 5.4E-23 T 12-10-2018 IPR013830 SGNH hydrolase-type esterase domain AMJ96_CH04184 f0fa215fcdebcb208f6470a375c18f19 214 SUPERFAMILY SSF52266 26 201 3.21E-46 T 12-10-2018 AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 Pfam PF01627 Hpt domain 8 98 7.9E-16 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 Gene3D G3DSA:1.20.120.160 4 128 3.1E-32 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 Gene3D G3DSA:3.30.565.10 355 539 1.3E-55 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 SMART SM01231 294 354 8.0E-17 T 12-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 SUPERFAMILY SSF55874 356 538 2.75E-39 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 402 539 5.1E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 Gene3D G3DSA:2.40.50.180 563 624 3.3E-37 T 12-10-2018 AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 297 353 2.8E-13 T 12-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 Gene3D G3DSA:2.30.30.40 540 665 3.3E-37 T 12-10-2018 AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 SMART SM00073 3 100 4.2E-25 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 Pfam PF01584 CheW-like domain 545 670 6.5E-24 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 SMART SM00387 399 540 4.2E-25 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 458 3.6E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 PRINTS PR00344 Bacterial sensor protein C-terminal signature 500 518 3.6E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 PRINTS PR00344 Bacterial sensor protein C-terminal signature 524 537 3.6E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 PRINTS PR00344 Bacterial sensor protein C-terminal signature 484 494 3.6E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 SMART SM00260 532 669 1.8E-32 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 SUPERFAMILY SSF50341 539 669 1.7E-30 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 SUPERFAMILY SSF47226 7 121 2.36E-26 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 SUPERFAMILY SSF47384 296 355 2.0E-12 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH03766 7bf97f21aa8b3c5edf7e729ebfbfc8ff 683 Gene3D G3DSA:1.10.287.560 294 354 4.2E-14 T 12-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 AMJ96_CH04220 5676935bd05a471d6abb490a00cbc8c2 894 Pfam PF01580 FtsK/SpoIIIE family 499 718 1.4E-64 T 12-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AMJ96_CH04220 5676935bd05a471d6abb490a00cbc8c2 894 SMART SM00843 824 888 8.5E-38 T 12-10-2018 IPR018541 FtsK gamma domain AMJ96_CH04220 5676935bd05a471d6abb490a00cbc8c2 894 SUPERFAMILY SSF46785 824 888 9.93E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH04220 5676935bd05a471d6abb490a00cbc8c2 894 Gene3D G3DSA:3.30.980.40 390 495 7.7E-30 T 12-10-2018 AMJ96_CH04220 5676935bd05a471d6abb490a00cbc8c2 894 Pfam PF09397 Ftsk gamma domain 826 885 9.0E-26 T 12-10-2018 IPR018541 FtsK gamma domain AMJ96_CH04220 5676935bd05a471d6abb490a00cbc8c2 894 SMART SM00382 534 739 0.0012 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04220 5676935bd05a471d6abb490a00cbc8c2 894 SUPERFAMILY SSF52540 479 788 4.85E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04220 5676935bd05a471d6abb490a00cbc8c2 894 Gene3D G3DSA:1.10.10.10 819 884 3.7E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH04220 5676935bd05a471d6abb490a00cbc8c2 894 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 26 180 6.6E-19 T 12-10-2018 IPR025199 DNA translocase FtsK, 4TM region AMJ96_CH04220 5676935bd05a471d6abb490a00cbc8c2 894 Gene3D G3DSA:3.40.50.300 496 803 1.3E-114 T 12-10-2018 AMJ96_PB00359 8ec21006b90eba40c0a7f0348e9c882b 316 Pfam PF00005 ABC transporter 34 176 5.2E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PB00359 8ec21006b90eba40c0a7f0348e9c882b 316 SMART SM00382 42 225 9.8E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PB00359 8ec21006b90eba40c0a7f0348e9c882b 316 SUPERFAMILY SSF52540 18 238 1.41E-66 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PB00359 8ec21006b90eba40c0a7f0348e9c882b 316 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PB00359 8ec21006b90eba40c0a7f0348e9c882b 316 Gene3D G3DSA:3.40.50.300 6 244 8.7E-74 T 12-10-2018 AMJ96_PB00359 8ec21006b90eba40c0a7f0348e9c882b 316 TIGRFAM TIGR01288 nodI: nodulation ABC transporter NodI 17 316 5.4E-176 T 12-10-2018 IPR005978 Nodulation ABC transporter, NodI GO:0005215|GO:0005524|GO:0009877|GO:0016020 AMJ96_CH00662 4eccf67efac5c9de80992b91c14449fe 559 Gene3D G3DSA:3.40.50.1820 331 537 5.2E-43 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH00662 4eccf67efac5c9de80992b91c14449fe 559 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 24 284 5.3E-16 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH00662 4eccf67efac5c9de80992b91c14449fe 559 SUPERFAMILY SSF53474 332 535 3.1E-42 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH00662 4eccf67efac5c9de80992b91c14449fe 559 Gene3D G3DSA:3.10.180.10 85 229 2.1E-83 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH00662 4eccf67efac5c9de80992b91c14449fe 559 SUPERFAMILY SSF54593 21 306 3.52E-31 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH00662 4eccf67efac5c9de80992b91c14449fe 559 Gene3D G3DSA:3.10.180.10 24 308 2.1E-83 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01755 b73606f9503bcde2225b4d2f43034713 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 2.3E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01755 b73606f9503bcde2225b4d2f43034713 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 2.3E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01755 b73606f9503bcde2225b4d2f43034713 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 2.3E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01755 b73606f9503bcde2225b4d2f43034713 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 2.3E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01755 b73606f9503bcde2225b4d2f43034713 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 2.3E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01755 b73606f9503bcde2225b4d2f43034713 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 6.3E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01755 b73606f9503bcde2225b4d2f43034713 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 6.3E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01755 b73606f9503bcde2225b4d2f43034713 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 6.3E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01755 b73606f9503bcde2225b4d2f43034713 283 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH01755 b73606f9503bcde2225b4d2f43034713 283 Pfam PF00106 short chain dehydrogenase 2 186 1.5E-48 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01755 b73606f9503bcde2225b4d2f43034713 283 SUPERFAMILY SSF51735 1 249 6.95E-61 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01755 b73606f9503bcde2225b4d2f43034713 283 Gene3D G3DSA:3.40.50.720 1 278 4.2E-77 T 12-10-2018 AMJ96_PB00356 387c2634a9b7c1b0c92f6b81a74b4b5f 314 Pfam PF03466 LysR substrate binding domain 99 294 9.0E-9 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PB00356 387c2634a9b7c1b0c92f6b81a74b4b5f 314 SUPERFAMILY SSF53850 90 297 1.28E-41 T 12-10-2018 AMJ96_PB00356 387c2634a9b7c1b0c92f6b81a74b4b5f 314 Gene3D G3DSA:3.40.190.10 170 269 2.4E-52 T 12-10-2018 AMJ96_PB00356 387c2634a9b7c1b0c92f6b81a74b4b5f 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 6.2E-14 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PB00356 387c2634a9b7c1b0c92f6b81a74b4b5f 314 Gene3D G3DSA:3.40.190.10 92 293 2.4E-52 T 12-10-2018 AMJ96_PB00356 387c2634a9b7c1b0c92f6b81a74b4b5f 314 SUPERFAMILY SSF46785 3 80 4.42E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PB00356 387c2634a9b7c1b0c92f6b81a74b4b5f 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.0E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PB00356 387c2634a9b7c1b0c92f6b81a74b4b5f 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.0E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PB00356 387c2634a9b7c1b0c92f6b81a74b4b5f 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.0E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PB00356 387c2634a9b7c1b0c92f6b81a74b4b5f 314 Gene3D G3DSA:1.10.10.10 1 89 1.3E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00644 1fea3b3b999aae3181f6426119dc644d 569 Gene3D G3DSA:3.40.50.970 2 180 1.6E-43 T 12-10-2018 AMJ96_PD00644 1fea3b3b999aae3181f6426119dc644d 569 Gene3D G3DSA:3.40.50.1220 190 371 5.6E-42 T 12-10-2018 AMJ96_PD00644 1fea3b3b999aae3181f6426119dc644d 569 Gene3D G3DSA:3.40.50.970 372 567 6.1E-58 T 12-10-2018 AMJ96_PD00644 1fea3b3b999aae3181f6426119dc644d 569 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 195 334 6.7E-34 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMJ96_PD00644 1fea3b3b999aae3181f6426119dc644d 569 SUPERFAMILY SSF52518 6 173 7.36E-36 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_PD00644 1fea3b3b999aae3181f6426119dc644d 569 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 404 549 1.2E-35 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMJ96_PD00644 1fea3b3b999aae3181f6426119dc644d 569 SUPERFAMILY SSF52467 188 392 2.36E-37 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMJ96_PD00644 1fea3b3b999aae3181f6426119dc644d 569 SUPERFAMILY SSF52518 375 559 4.95E-52 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_PD00644 1fea3b3b999aae3181f6426119dc644d 569 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 439 458 - T 12-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AMJ96_PD00644 1fea3b3b999aae3181f6426119dc644d 569 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 7 171 2.2E-38 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMJ96_CH04174 2a75fb8f99082101982224ab6c97ec1b 264 SMART SM00382 31 234 6.0E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04174 2a75fb8f99082101982224ab6c97ec1b 264 Gene3D G3DSA:3.40.50.300 1 255 6.5E-52 T 12-10-2018 AMJ96_CH04174 2a75fb8f99082101982224ab6c97ec1b 264 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH04174 2a75fb8f99082101982224ab6c97ec1b 264 SUPERFAMILY SSF52540 2 230 7.27E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04174 2a75fb8f99082101982224ab6c97ec1b 264 Pfam PF00005 ABC transporter 22 177 3.8E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03795 7101a55103bf139834b2caae5cf21b25 385 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 52 376 3.0E-125 T 12-10-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 AMJ96_CH03795 7101a55103bf139834b2caae5cf21b25 385 Pfam PF00425 chorismate binding enzyme 120 373 3.1E-82 T 12-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AMJ96_CH03795 7101a55103bf139834b2caae5cf21b25 385 Gene3D G3DSA:3.60.120.10 5 380 6.5E-111 T 12-10-2018 IPR005801 ADC synthase GO:0009058 AMJ96_CH03795 7101a55103bf139834b2caae5cf21b25 385 PRINTS PR00095 Anthranilate synthase component I signature 329 343 1.4E-10 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMJ96_CH03795 7101a55103bf139834b2caae5cf21b25 385 PRINTS PR00095 Anthranilate synthase component I signature 234 247 1.4E-10 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMJ96_CH03795 7101a55103bf139834b2caae5cf21b25 385 PRINTS PR00095 Anthranilate synthase component I signature 220 233 1.4E-10 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMJ96_CH03795 7101a55103bf139834b2caae5cf21b25 385 PRINTS PR00095 Anthranilate synthase component I signature 314 328 1.4E-10 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMJ96_CH03795 7101a55103bf139834b2caae5cf21b25 385 SUPERFAMILY SSF56322 35 377 3.79E-106 T 12-10-2018 IPR005801 ADC synthase GO:0009058 AMJ96_CH01409 e280e19e9d7764dfe9ee41c979701b28 367 SUPERFAMILY SSF53383 9 364 3.23E-119 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH01409 e280e19e9d7764dfe9ee41c979701b28 367 PIRSF PIRSF000390 1 367 8.0E-115 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMJ96_CH01409 e280e19e9d7764dfe9ee41c979701b28 367 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 14 361 3.9E-127 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMJ96_CH01409 e280e19e9d7764dfe9ee41c979701b28 367 Gene3D G3DSA:3.40.640.10 1 237 5.4E-99 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH01409 e280e19e9d7764dfe9ee41c979701b28 367 Gene3D G3DSA:3.90.1150.10 238 366 1.5E-37 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH00155 d0dae37c926e90b2e3ec91c0c3ee87a6 795 SUPERFAMILY SSF55073 355 512 3.77E-45 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH00155 d0dae37c926e90b2e3ec91c0c3ee87a6 795 SUPERFAMILY SSF55785 259 346 4.71E-10 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH00155 d0dae37c926e90b2e3ec91c0c3ee87a6 795 Pfam PF13188 PAS domain 244 284 5.8E-5 T 12-10-2018 IPR000014 PAS domain AMJ96_CH00155 d0dae37c926e90b2e3ec91c0c3ee87a6 795 Gene3D G3DSA:3.30.450.20 247 348 4.1E-8 T 12-10-2018 AMJ96_CH00155 d0dae37c926e90b2e3ec91c0c3ee87a6 795 Gene3D G3DSA:3.30.70.270 349 524 1.7E-54 T 12-10-2018 AMJ96_CH00155 d0dae37c926e90b2e3ec91c0c3ee87a6 795 Pfam PF00990 Diguanylate cyclase, GGDEF domain 350 506 2.2E-46 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH00155 d0dae37c926e90b2e3ec91c0c3ee87a6 795 SUPERFAMILY SSF141868 526 758 2.75E-85 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH00155 d0dae37c926e90b2e3ec91c0c3ee87a6 795 SMART SM00267 339 511 1.2E-59 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH00155 d0dae37c926e90b2e3ec91c0c3ee87a6 795 SMART SM00052 521 764 5.3E-99 T 12-10-2018 IPR001633 EAL domain AMJ96_CH00155 d0dae37c926e90b2e3ec91c0c3ee87a6 795 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 247 345 8.9E-9 T 12-10-2018 IPR000014 PAS domain AMJ96_CH00155 d0dae37c926e90b2e3ec91c0c3ee87a6 795 Pfam PF00563 EAL domain 527 758 1.8E-70 T 12-10-2018 IPR001633 EAL domain AMJ96_CH00155 d0dae37c926e90b2e3ec91c0c3ee87a6 795 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 346 508 1.6E-39 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH00155 d0dae37c926e90b2e3ec91c0c3ee87a6 795 Pfam PF03707 Bacterial signalling protein N terminal repeat 121 175 2.0E-8 T 12-10-2018 IPR005330 MHYT domain AMJ96_CH00155 d0dae37c926e90b2e3ec91c0c3ee87a6 795 Pfam PF03707 Bacterial signalling protein N terminal repeat 58 116 5.5E-15 T 12-10-2018 IPR005330 MHYT domain AMJ96_CH00155 d0dae37c926e90b2e3ec91c0c3ee87a6 795 Gene3D G3DSA:3.20.20.450 525 775 3.4E-92 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH02429 bb0128fa788b4a5e81f6cc62fce46eb0 275 Pfam PF07676 WD40-like Beta Propeller Repeat 102 136 2.1E-4 T 12-10-2018 IPR011659 WD40-like Beta Propeller AMJ96_CH02429 bb0128fa788b4a5e81f6cc62fce46eb0 275 Pfam PF07676 WD40-like Beta Propeller Repeat 146 181 2.6E-9 T 12-10-2018 IPR011659 WD40-like Beta Propeller AMJ96_CH02429 bb0128fa788b4a5e81f6cc62fce46eb0 275 SUPERFAMILY SSF82171 3 273 9.42E-40 T 12-10-2018 AMJ96_CH02429 bb0128fa788b4a5e81f6cc62fce46eb0 275 Gene3D G3DSA:2.120.10.30 1 275 4.0E-114 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 Gene3D G3DSA:3.30.390.30 337 451 6.8E-30 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 38 48 - T 12-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 PIRSF PIRSF000350 1 441 6.3E-95 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 307 2.0E-60 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 1.9E-25 T 12-10-2018 AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 171 189 1.9E-25 T 12-10-2018 AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 270 1.9E-25 T 12-10-2018 AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 1.9E-25 T 12-10-2018 AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 305 1.9E-25 T 12-10-2018 AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 Gene3D G3DSA:3.50.50.60 144 261 1.6E-98 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 340 445 2.3E-24 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 Gene3D G3DSA:3.50.50.60 4 324 1.6E-98 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 255 269 4.9E-48 T 12-10-2018 AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 305 4.9E-48 T 12-10-2018 AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 4.9E-48 T 12-10-2018 AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 421 441 4.9E-48 T 12-10-2018 AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 399 414 4.9E-48 T 12-10-2018 AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 4.9E-48 T 12-10-2018 AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 334 355 4.9E-48 T 12-10-2018 AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 171 196 4.9E-48 T 12-10-2018 AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 37 52 4.9E-48 T 12-10-2018 AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 SUPERFAMILY SSF51905 1 327 1.73E-51 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00281 273d2652c6b07298e2c5900e9f8a2ed9 453 SUPERFAMILY SSF55424 339 447 1.13E-30 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMJ96_PD00163 39f0a9126ea9800b7ff06023895e3143 389 Pfam PF00107 Zinc-binding dehydrogenase 196 268 1.1E-11 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_PD00163 39f0a9126ea9800b7ff06023895e3143 389 SMART SM00829 8 387 0.0027 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_PD00163 39f0a9126ea9800b7ff06023895e3143 389 Pfam PF13823 Alcohol dehydrogenase GroES-associated 2 23 1.2E-10 T 12-10-2018 IPR027399 Alcohol dehydrogenase GroES-associated AMJ96_PD00163 39f0a9126ea9800b7ff06023895e3143 389 Gene3D G3DSA:3.90.180.10 8 375 6.2E-131 T 12-10-2018 AMJ96_PD00163 39f0a9126ea9800b7ff06023895e3143 389 Gene3D G3DSA:3.40.50.720 177 340 6.2E-131 T 12-10-2018 AMJ96_PD00163 39f0a9126ea9800b7ff06023895e3143 389 SUPERFAMILY SSF51735 163 351 2.42E-64 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00163 39f0a9126ea9800b7ff06023895e3143 389 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 150 1.0E-29 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_PD00163 39f0a9126ea9800b7ff06023895e3143 389 SUPERFAMILY SSF50129 2 199 2.74E-60 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_CH01254 3883df22b8ac377976996fd1b32b9c7e 147 Pfam PF01322 Cytochrome C' 29 143 1.1E-29 T 12-10-2018 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 AMJ96_CH01254 3883df22b8ac377976996fd1b32b9c7e 147 PIRSF PIRSF000027 4 145 6.1E-39 T 12-10-2018 IPR012127 Cytochrome c prime GO:0005506|GO:0009055|GO:0020037|GO:0042597 AMJ96_CH01254 3883df22b8ac377976996fd1b32b9c7e 147 PRINTS PR00608 Class II cytochrome C signature 132 143 3.0E-7 T 12-10-2018 IPR015984 Cytochrome c prime, subgroup AMJ96_CH01254 3883df22b8ac377976996fd1b32b9c7e 147 PRINTS PR00608 Class II cytochrome C signature 109 132 3.0E-7 T 12-10-2018 IPR015984 Cytochrome c prime, subgroup AMJ96_CH01254 3883df22b8ac377976996fd1b32b9c7e 147 Gene3D G3DSA:1.20.120.10 19 144 6.1E-31 T 12-10-2018 AMJ96_CH01254 3883df22b8ac377976996fd1b32b9c7e 147 SUPERFAMILY SSF47175 27 145 2.65E-31 T 12-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 AMJ96_PC00278 8e67479a00220e7425af1f9d47da6acc 120 Gene3D G3DSA:2.60.40.1220 22 120 3.0E-16 T 12-10-2018 AMJ96_PC00278 8e67479a00220e7425af1f9d47da6acc 120 SUPERFAMILY SSF81296 27 119 1.75E-17 T 12-10-2018 IPR014756 Immunoglobulin E-set AMJ96_PC00278 8e67479a00220e7425af1f9d47da6acc 120 Pfam PF04234 CopC domain 28 118 5.7E-13 T 12-10-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 AMJ96_CH03762 0de0930d13acec68a7cfc16c2cb7d3f3 158 SUPERFAMILY SSF50341 8 149 9.02E-33 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMJ96_CH03762 0de0930d13acec68a7cfc16c2cb7d3f3 158 Gene3D G3DSA:2.30.30.40 11 140 4.4E-33 T 12-10-2018 AMJ96_CH03762 0de0930d13acec68a7cfc16c2cb7d3f3 158 SMART SM00260 5 146 7.0E-32 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMJ96_CH03762 0de0930d13acec68a7cfc16c2cb7d3f3 158 Pfam PF01584 CheW-like domain 9 148 5.4E-30 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMJ96_CH03762 0de0930d13acec68a7cfc16c2cb7d3f3 158 Gene3D G3DSA:2.40.50.180 28 141 4.4E-33 T 12-10-2018 AMJ96_PD00501 0a6434131a9f27ed4955c39774c17944 642 SUPERFAMILY SSF55073 470 630 1.02E-46 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_PD00501 0a6434131a9f27ed4955c39774c17944 642 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 461 628 1.7E-52 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PD00501 0a6434131a9f27ed4955c39774c17944 642 SUPERFAMILY SSF55785 219 328 4.71E-14 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PD00501 0a6434131a9f27ed4955c39774c17944 642 SMART SM00091 331 398 48.0 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00501 0a6434131a9f27ed4955c39774c17944 642 SMART SM00091 208 275 0.39 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00501 0a6434131a9f27ed4955c39774c17944 642 Pfam PF07694 5TMR of 5TMR-LYT 38 197 5.5E-23 T 12-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 AMJ96_PD00501 0a6434131a9f27ed4955c39774c17944 642 SMART SM00267 454 630 1.1E-62 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PD00501 0a6434131a9f27ed4955c39774c17944 642 SUPERFAMILY SSF55785 316 445 4.19E-10 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PD00501 0a6434131a9f27ed4955c39774c17944 642 Pfam PF12860 PAS fold 338 451 2.3E-15 T 12-10-2018 AMJ96_PD00501 0a6434131a9f27ed4955c39774c17944 642 Gene3D G3DSA:3.30.450.20 329 456 4.4E-10 T 12-10-2018 AMJ96_PD00501 0a6434131a9f27ed4955c39774c17944 642 Gene3D G3DSA:3.30.450.20 199 328 1.3E-22 T 12-10-2018 AMJ96_PD00501 0a6434131a9f27ed4955c39774c17944 642 Pfam PF00990 Diguanylate cyclase, GGDEF domain 465 626 1.9E-46 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PD00501 0a6434131a9f27ed4955c39774c17944 642 Gene3D G3DSA:3.30.70.270 457 630 3.0E-58 T 12-10-2018 AMJ96_PD00501 0a6434131a9f27ed4955c39774c17944 642 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 209 326 2.2E-10 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00501 0a6434131a9f27ed4955c39774c17944 642 Pfam PF08448 PAS fold 214 320 1.6E-17 T 12-10-2018 IPR013656 PAS fold-4 AMJ96_CH04243 3ee8958850e30bcbc43df37d8dff892f 249 Pfam PF00005 ABC transporter 20 167 1.4E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH04243 3ee8958850e30bcbc43df37d8dff892f 249 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH04243 3ee8958850e30bcbc43df37d8dff892f 249 SUPERFAMILY SSF52540 4 228 9.37E-67 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04243 3ee8958850e30bcbc43df37d8dff892f 249 SMART SM00382 29 216 7.7E-20 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04243 3ee8958850e30bcbc43df37d8dff892f 249 Gene3D G3DSA:3.40.50.300 2 247 2.5E-77 T 12-10-2018 AMJ96_PC00266 c8ac8ccfaf614fc05583932d17054795 346 SMART SM00382 27 214 1.2E-19 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00266 c8ac8ccfaf614fc05583932d17054795 346 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00266 c8ac8ccfaf614fc05583932d17054795 346 SUPERFAMILY SSF52540 3 246 1.77E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00266 c8ac8ccfaf614fc05583932d17054795 346 Gene3D G3DSA:2.40.50.140 280 336 9.4E-6 T 12-10-2018 AMJ96_PC00266 c8ac8ccfaf614fc05583932d17054795 346 Pfam PF00005 ABC transporter 18 164 9.4E-36 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00266 c8ac8ccfaf614fc05583932d17054795 346 Gene3D G3DSA:3.40.50.300 2 225 6.2E-74 T 12-10-2018 AMJ96_PC00266 c8ac8ccfaf614fc05583932d17054795 346 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 4 243 3.6E-111 T 12-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 AMJ96_PC00266 c8ac8ccfaf614fc05583932d17054795 346 Pfam PF12857 TOBE-like domain 285 338 4.0E-8 T 12-10-2018 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 AMJ96_PC00266 c8ac8ccfaf614fc05583932d17054795 346 Gene3D G3DSA:2.40.50.940 226 345 9.4E-6 T 12-10-2018 AMJ96_PA00199 6971418e26499b6ab54c06c8cb88cd29 343 SUPERFAMILY SSF50129 1 178 2.36E-52 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_PA00199 6971418e26499b6ab54c06c8cb88cd29 343 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMJ96_PA00199 6971418e26499b6ab54c06c8cb88cd29 343 SUPERFAMILY SSF51735 143 308 3.51E-30 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PA00199 6971418e26499b6ab54c06c8cb88cd29 343 Gene3D G3DSA:3.90.180.10 9 330 3.5E-100 T 12-10-2018 AMJ96_PA00199 6971418e26499b6ab54c06c8cb88cd29 343 SMART SM00829 7 341 9.1E-5 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_PA00199 6971418e26499b6ab54c06c8cb88cd29 343 Pfam PF00107 Zinc-binding dehydrogenase 179 303 4.0E-18 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_PA00199 6971418e26499b6ab54c06c8cb88cd29 343 Gene3D G3DSA:3.40.50.720 156 290 3.5E-100 T 12-10-2018 AMJ96_PA00199 6971418e26499b6ab54c06c8cb88cd29 343 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 139 6.3E-32 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_PC00202 92abe89af893bab16171a0abfa21e077 502 SMART SM00813 290 494 5.2E-89 T 12-10-2018 IPR010720 Alpha-L-arabinofuranosidase, C-terminal GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 AMJ96_PC00202 92abe89af893bab16171a0abfa21e077 502 SUPERFAMILY SSF51445 16 383 1.92E-113 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_PC00202 92abe89af893bab16171a0abfa21e077 502 SUPERFAMILY SSF51011 364 500 5.4E-38 T 12-10-2018 AMJ96_PC00202 92abe89af893bab16171a0abfa21e077 502 Pfam PF06964 Alpha-L-arabinofuranosidase C-terminal domain 290 494 9.4E-42 T 12-10-2018 IPR010720 Alpha-L-arabinofuranosidase, C-terminal GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 AMJ96_PC00202 92abe89af893bab16171a0abfa21e077 502 Gene3D G3DSA:2.60.40.1180 5 499 2.4E-215 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta AMJ96_PC00202 92abe89af893bab16171a0abfa21e077 502 Gene3D G3DSA:3.20.20.80 17 383 2.4E-215 T 12-10-2018 AMJ96_PB00166 837772cdf038c835b8f46a5bd0adb800 431 SUPERFAMILY SSF53383 32 418 1.01E-107 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_PB00166 837772cdf038c835b8f46a5bd0adb800 431 Pfam PF00155 Aminotransferase class I and II 61 412 6.3E-52 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_PB00166 837772cdf038c835b8f46a5bd0adb800 431 Gene3D G3DSA:3.90.1150.10 318 415 3.1E-120 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_PB00166 837772cdf038c835b8f46a5bd0adb800 431 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 265 278 - T 12-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AMJ96_PB00166 837772cdf038c835b8f46a5bd0adb800 431 Gene3D G3DSA:3.40.640.10 93 317 3.1E-120 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 SUPERFAMILY SSF50677 227 418 1.26E-44 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 Gene3D G3DSA:3.40.50.620 34 581 0.0 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 222 412 1.7E-65 T 12-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 43 54 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 5 876 22.692 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 6 876 2.7E-302 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 SUPERFAMILY SSF47323 675 876 1.81E-28 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 Gene3D G3DSA:3.10.330.110 582 641 0.0 T 12-10-2018 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 186 199 1.7E-44 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 501 519 1.7E-44 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 216 235 1.7E-44 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 128 145 1.7E-44 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 572 582 1.7E-44 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 539 561 1.7E-44 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 PRINTS PR00985 Leucyl-tRNA synthetase signature 154 170 1.7E-44 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 Gene3D G3DSA:3.10.20.590 816 876 5.8E-17 T 12-10-2018 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 Gene3D G3DSA:1.10.730.10 10 806 0.0 T 12-10-2018 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 SUPERFAMILY SSF52374 5 681 4.28E-153 T 12-10-2018 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 Gene3D G3DSA:3.90.740.10 228 428 0.0 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 Pfam PF08264 Anticodon-binding domain of tRNA 716 839 8.3E-17 T 12-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 15 172 5.4E-25 T 12-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 431 604 3.5E-9 T 12-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH04372 dc60b2a7371fc8806511d83170241a40 876 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 631 671 1.5E-8 T 12-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH02445 30c13f862bec5b48833c6a7f013a78ba 535 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 367 531 2.3E-56 T 12-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AMJ96_CH02445 30c13f862bec5b48833c6a7f013a78ba 535 PIRSF PIRSF001394 24 535 5.1E-227 T 12-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 AMJ96_CH02445 30c13f862bec5b48833c6a7f013a78ba 535 Pfam PF05681 Fumarate hydratase (Fumerase) 45 319 9.7E-86 T 12-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AMJ96_CH02445 30c13f862bec5b48833c6a7f013a78ba 535 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 77 320 7.9E-32 T 12-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AMJ96_CH02445 30c13f862bec5b48833c6a7f013a78ba 535 Pfam PF05683 Fumarase C-terminus 326 531 4.1E-93 T 12-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AMJ96_CH02445 30c13f862bec5b48833c6a7f013a78ba 535 Gene3D G3DSA:3.20.130.10 343 531 1.4E-57 T 12-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 AMJ96_CH02445 30c13f862bec5b48833c6a7f013a78ba 535 ProSitePatterns PS00163 Fumarate lyases signature. 450 459 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AMJ96_CH02445 30c13f862bec5b48833c6a7f013a78ba 535 SUPERFAMILY SSF117457 355 530 3.4E-61 T 12-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 AMJ96_CH00746 d5f03eceff0f8ace38db764195130e7c 491 SUPERFAMILY SSF55347 179 488 2.22E-115 T 12-10-2018 AMJ96_CH00746 d5f03eceff0f8ace38db764195130e7c 491 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 14 189 7.8E-60 T 12-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH00746 d5f03eceff0f8ace38db764195130e7c 491 PIRSF PIRSF000110 1 491 8.7E-175 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH00746 d5f03eceff0f8ace38db764195130e7c 491 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 10 489 88.891 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH00746 d5f03eceff0f8ace38db764195130e7c 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 329 355 6.0E-49 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH00746 d5f03eceff0f8ace38db764195130e7c 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 221 238 6.0E-49 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH00746 d5f03eceff0f8ace38db764195130e7c 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 145 158 6.0E-49 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH00746 d5f03eceff0f8ace38db764195130e7c 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 169 197 6.0E-49 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH00746 d5f03eceff0f8ace38db764195130e7c 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 239 255 6.0E-49 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH00746 d5f03eceff0f8ace38db764195130e7c 491 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 179 185 - T 12-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH00746 d5f03eceff0f8ace38db764195130e7c 491 SUPERFAMILY SSF51735 3 192 8.86E-59 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00746 d5f03eceff0f8ace38db764195130e7c 491 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 11 489 4.1E-181 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH00746 d5f03eceff0f8ace38db764195130e7c 491 Gene3D G3DSA:3.30.360.10 178 489 7.5E-125 T 12-10-2018 AMJ96_CH00746 d5f03eceff0f8ace38db764195130e7c 491 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 191 488 1.2E-118 T 12-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH00746 d5f03eceff0f8ace38db764195130e7c 491 Gene3D G3DSA:3.40.50.720 10 177 6.5E-47 T 12-10-2018 AMJ96_CH02476 3f73dc86a7f86ccc82c0cae39f9dccb4 246 SMART SM00448 5 117 3.9E-38 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02476 3f73dc86a7f86ccc82c0cae39f9dccb4 246 SUPERFAMILY SSF46894 136 236 5.95E-25 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH02476 3f73dc86a7f86ccc82c0cae39f9dccb4 246 Gene3D G3DSA:3.40.50.2300 1 125 1.9E-37 T 12-10-2018 AMJ96_CH02476 3f73dc86a7f86ccc82c0cae39f9dccb4 246 Gene3D G3DSA:1.10.10.10 129 239 2.8E-32 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02476 3f73dc86a7f86ccc82c0cae39f9dccb4 246 Pfam PF00072 Response regulator receiver domain 7 118 5.9E-29 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02476 3f73dc86a7f86ccc82c0cae39f9dccb4 246 SMART SM00862 159 235 4.4E-19 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH02476 3f73dc86a7f86ccc82c0cae39f9dccb4 246 SUPERFAMILY SSF52172 6 134 5.98E-41 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH02476 3f73dc86a7f86ccc82c0cae39f9dccb4 246 Pfam PF00486 Transcriptional regulatory protein, C terminal 159 235 5.0E-20 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH02000 4f8c37c2f9dd06b0a6e78147564f7aea 424 SMART SM01193 4 133 1.3E-95 T 12-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMJ96_CH02000 4f8c37c2f9dd06b0a6e78147564f7aea 424 Hamap MF_00318 Enolase [eno]. 2 410 44.253 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMJ96_CH02000 4f8c37c2f9dd06b0a6e78147564f7aea 424 Pfam PF00113 Enolase, C-terminal TIM barrel domain 140 423 7.0E-131 T 12-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMJ96_CH02000 4f8c37c2f9dd06b0a6e78147564f7aea 424 SMART SM01192 138 424 7.1E-216 T 12-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMJ96_CH02000 4f8c37c2f9dd06b0a6e78147564f7aea 424 SUPERFAMILY SSF51604 139 421 1.02E-124 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_CH02000 4f8c37c2f9dd06b0a6e78147564f7aea 424 ProSitePatterns PS00164 Enolase signature. 333 346 - T 12-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH02000 4f8c37c2f9dd06b0a6e78147564f7aea 424 Gene3D G3DSA:3.30.390.10 1 126 2.4E-55 T 12-10-2018 IPR029017 Enolase-like, N-terminal AMJ96_CH02000 4f8c37c2f9dd06b0a6e78147564f7aea 424 PIRSF PIRSF001400 1 424 4.3E-187 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMJ96_CH02000 4f8c37c2f9dd06b0a6e78147564f7aea 424 Pfam PF03952 Enolase, N-terminal domain 4 133 9.9E-60 T 12-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMJ96_CH02000 4f8c37c2f9dd06b0a6e78147564f7aea 424 Gene3D G3DSA:3.20.20.120 127 423 3.6E-127 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_CH02000 4f8c37c2f9dd06b0a6e78147564f7aea 424 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 421 2.2E-204 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMJ96_CH02000 4f8c37c2f9dd06b0a6e78147564f7aea 424 PRINTS PR00148 Enolase signature 37 51 1.9E-48 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMJ96_CH02000 4f8c37c2f9dd06b0a6e78147564f7aea 424 PRINTS PR00148 Enolase signature 106 122 1.9E-48 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMJ96_CH02000 4f8c37c2f9dd06b0a6e78147564f7aea 424 PRINTS PR00148 Enolase signature 362 379 1.9E-48 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMJ96_CH02000 4f8c37c2f9dd06b0a6e78147564f7aea 424 PRINTS PR00148 Enolase signature 310 321 1.9E-48 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMJ96_CH02000 4f8c37c2f9dd06b0a6e78147564f7aea 424 PRINTS PR00148 Enolase signature 160 173 1.9E-48 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMJ96_CH02000 4f8c37c2f9dd06b0a6e78147564f7aea 424 PRINTS PR00148 Enolase signature 333 347 1.9E-48 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AMJ96_CH02000 4f8c37c2f9dd06b0a6e78147564f7aea 424 SUPERFAMILY SSF54826 4 135 1.33E-55 T 12-10-2018 AMJ96_CH04125 9026fcaceba867916f9eb8e04804df9e 310 Gene3D G3DSA:3.20.20.70 2 307 2.1E-99 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH04125 9026fcaceba867916f9eb8e04804df9e 310 SMART SM01130 7 302 1.5E-59 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH04125 9026fcaceba867916f9eb8e04804df9e 310 SUPERFAMILY SSF51569 5 300 1.26E-61 T 12-10-2018 AMJ96_CH04125 9026fcaceba867916f9eb8e04804df9e 310 Pfam PF00701 Dihydrodipicolinate synthetase family 9 297 5.1E-30 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH04125 9026fcaceba867916f9eb8e04804df9e 310 PRINTS PR00146 Dihydrodipicolinate synthase signature 77 95 6.5E-6 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH04125 9026fcaceba867916f9eb8e04804df9e 310 PRINTS PR00146 Dihydrodipicolinate synthase signature 134 151 6.5E-6 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH04125 9026fcaceba867916f9eb8e04804df9e 310 PRINTS PR00146 Dihydrodipicolinate synthase signature 41 62 6.5E-6 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH04125 9026fcaceba867916f9eb8e04804df9e 310 PIRSF PIRSF001365 5 308 2.0E-49 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PA00224 525defe970bf278526f3c8db8e0c3d35 140 Pfam PF01850 PIN domain 4 124 2.5E-16 T 12-10-2018 IPR002716 PIN domain AMJ96_PA00224 525defe970bf278526f3c8db8e0c3d35 140 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 3 137 11.369 T 12-10-2018 IPR022907 VapC family GO:0004540 AMJ96_PA00224 525defe970bf278526f3c8db8e0c3d35 140 Gene3D G3DSA:3.40.50.1010 3 139 7.6E-43 T 12-10-2018 AMJ96_PA00224 525defe970bf278526f3c8db8e0c3d35 140 SUPERFAMILY SSF88723 4 138 5.61E-31 T 12-10-2018 IPR029060 PIN-like domain superfamily AMJ96_CH01835 6f6edf44a54c2ab4f06c66a01360e115 413 Gene3D G3DSA:1.20.1250.20 7 192 9.8E-45 T 12-10-2018 AMJ96_CH01835 6f6edf44a54c2ab4f06c66a01360e115 413 Pfam PF07690 Major Facilitator Superfamily 23 258 9.5E-26 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH01835 6f6edf44a54c2ab4f06c66a01360e115 413 SUPERFAMILY SSF103473 17 403 4.32E-65 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH01835 6f6edf44a54c2ab4f06c66a01360e115 413 Gene3D G3DSA:1.20.1250.20 209 406 3.4E-54 T 12-10-2018 AMJ96_CH02784 daccfc4c3987ec702778194d06a2885c 176 Gene3D G3DSA:3.90.1140.10 14 174 7.0E-22 T 12-10-2018 AMJ96_CH02784 daccfc4c3987ec702778194d06a2885c 176 Pfam PF13563 2'-5' RNA ligase superfamily 34 157 1.1E-16 T 12-10-2018 AMJ96_CH02784 daccfc4c3987ec702778194d06a2885c 176 SUPERFAMILY SSF55144 36 160 3.4E-16 T 12-10-2018 IPR009097 Cyclic phosphodiesterase AMJ96_CH01188 bf9832551b6fff2d45c313501cbad87d 267 Pfam PF06182 ABC-2 family transporter protein 42 266 1.0E-35 T 12-10-2018 IPR010390 Protein of unknown function DUF990 AMJ96_CH00665 77f3c47b662d963fa8bfacd164d55b86 733 SMART SM00086 430 470 1.9E-5 T 12-10-2018 IPR001610 PAC motif AMJ96_CH00665 77f3c47b662d963fa8bfacd164d55b86 733 Pfam PF00512 His Kinase A (phospho-acceptor) domain 498 563 4.3E-8 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH00665 77f3c47b662d963fa8bfacd164d55b86 733 Gene3D G3DSA:3.30.565.10 563 727 1.2E-33 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00665 77f3c47b662d963fa8bfacd164d55b86 733 SMART SM00091 354 420 7.5E-11 T 12-10-2018 IPR000014 PAS domain AMJ96_CH00665 77f3c47b662d963fa8bfacd164d55b86 733 Gene3D G3DSA:3.30.450.20 351 467 5.1E-37 T 12-10-2018 AMJ96_CH00665 77f3c47b662d963fa8bfacd164d55b86 733 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 352 476 4.2E-31 T 12-10-2018 IPR000014 PAS domain AMJ96_CH00665 77f3c47b662d963fa8bfacd164d55b86 733 SMART SM00388 497 565 2.6E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH00665 77f3c47b662d963fa8bfacd164d55b86 733 Gene3D G3DSA:1.10.287.130 468 562 3.1E-15 T 12-10-2018 AMJ96_CH00665 77f3c47b662d963fa8bfacd164d55b86 733 SUPERFAMILY SSF47384 483 565 3.92E-15 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH00665 77f3c47b662d963fa8bfacd164d55b86 733 SUPERFAMILY SSF55785 365 478 4.83E-29 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH00665 77f3c47b662d963fa8bfacd164d55b86 733 SUPERFAMILY SSF55874 554 722 2.75E-34 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00665 77f3c47b662d963fa8bfacd164d55b86 733 Pfam PF00989 PAS fold 358 467 5.6E-17 T 12-10-2018 IPR013767 PAS fold GO:0006355 AMJ96_CH00665 77f3c47b662d963fa8bfacd164d55b86 733 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 608 722 4.9E-20 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00665 77f3c47b662d963fa8bfacd164d55b86 733 SMART SM00387 607 726 2.7E-24 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00665 77f3c47b662d963fa8bfacd164d55b86 733 PRINTS PR00344 Bacterial sensor protein C-terminal signature 686 704 6.5E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00665 77f3c47b662d963fa8bfacd164d55b86 733 PRINTS PR00344 Bacterial sensor protein C-terminal signature 652 666 6.5E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00665 77f3c47b662d963fa8bfacd164d55b86 733 PRINTS PR00344 Bacterial sensor protein C-terminal signature 710 723 6.5E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03124 b120e07d702163b2a4a8295dd654e39c 106 Gene3D G3DSA:3.30.70.100 2 91 2.2E-9 T 12-10-2018 AMJ96_CH03124 b120e07d702163b2a4a8295dd654e39c 106 SUPERFAMILY SSF54909 5 82 2.98E-10 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH02936 72314a7fa674a0b41325629d94583614 308 Gene3D G3DSA:3.40.190.10 162 262 1.2E-55 T 12-10-2018 AMJ96_CH02936 72314a7fa674a0b41325629d94583614 308 Gene3D G3DSA:3.40.190.10 91 288 1.2E-55 T 12-10-2018 AMJ96_CH02936 72314a7fa674a0b41325629d94583614 308 SUPERFAMILY SSF46785 5 83 3.67E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02936 72314a7fa674a0b41325629d94583614 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 7.5E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02936 72314a7fa674a0b41325629d94583614 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 7.5E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02936 72314a7fa674a0b41325629d94583614 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 7.5E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02936 72314a7fa674a0b41325629d94583614 308 Gene3D G3DSA:1.10.10.10 4 87 5.0E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02936 72314a7fa674a0b41325629d94583614 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 7.6E-22 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02936 72314a7fa674a0b41325629d94583614 308 SUPERFAMILY SSF53850 91 294 2.9E-36 T 12-10-2018 AMJ96_CH02936 72314a7fa674a0b41325629d94583614 308 Pfam PF03466 LysR substrate binding domain 91 291 3.6E-34 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH00348 22c8fa82be18894c319bc69f3116be12 581 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 15 558 3.3E-197 T 12-10-2018 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 AMJ96_CH00348 22c8fa82be18894c319bc69f3116be12 581 ProSitePatterns PS00211 ABC transporters family signature. 469 483 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00348 22c8fa82be18894c319bc69f3116be12 581 Gene3D G3DSA:3.40.50.300 325 577 8.4E-65 T 12-10-2018 AMJ96_CH00348 22c8fa82be18894c319bc69f3116be12 581 Pfam PF00005 ABC transporter 346 496 6.3E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00348 22c8fa82be18894c319bc69f3116be12 581 Gene3D G3DSA:1.20.1560.10 10 317 4.8E-30 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH00348 22c8fa82be18894c319bc69f3116be12 581 Pfam PF00664 ABC transporter transmembrane region 33 279 2.5E-13 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_CH00348 22c8fa82be18894c319bc69f3116be12 581 SMART SM00382 355 544 2.5E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00348 22c8fa82be18894c319bc69f3116be12 581 SUPERFAMILY SSF52540 322 555 1.26E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00348 22c8fa82be18894c319bc69f3116be12 581 SUPERFAMILY SSF90123 14 321 1.01E-39 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH02514 824b66f17818f1a08e5e1bc66340e76f 307 Gene3D G3DSA:1.10.10.10 2 87 1.1E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02514 824b66f17818f1a08e5e1bc66340e76f 307 Gene3D G3DSA:3.40.190.10 93 277 1.0E-32 T 12-10-2018 AMJ96_CH02514 824b66f17818f1a08e5e1bc66340e76f 307 SUPERFAMILY SSF53850 92 295 9.19E-40 T 12-10-2018 AMJ96_CH02514 824b66f17818f1a08e5e1bc66340e76f 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 1.2E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02514 824b66f17818f1a08e5e1bc66340e76f 307 Gene3D G3DSA:3.40.190.10 165 267 1.0E-32 T 12-10-2018 AMJ96_CH02514 824b66f17818f1a08e5e1bc66340e76f 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 6.0E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02514 824b66f17818f1a08e5e1bc66340e76f 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 6.0E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02514 824b66f17818f1a08e5e1bc66340e76f 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 6.0E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02514 824b66f17818f1a08e5e1bc66340e76f 307 Pfam PF03466 LysR substrate binding domain 92 291 1.3E-41 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH02514 824b66f17818f1a08e5e1bc66340e76f 307 SUPERFAMILY SSF46785 1 110 1.02E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00122 6e936550e17f74975258c62d631fcfce 198 SUPERFAMILY SSF74942 98 172 9.68E-15 T 12-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily AMJ96_CH00122 6e936550e17f74975258c62d631fcfce 198 Pfam PF17384 RimP C-terminal SH3 domain 100 170 7.0E-21 T 12-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal AMJ96_CH00122 6e936550e17f74975258c62d631fcfce 198 Pfam PF02576 RimP N-terminal domain 25 97 1.2E-25 T 12-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal AMJ96_CH00122 6e936550e17f74975258c62d631fcfce 198 Gene3D G3DSA:3.30.300.70 16 94 1.5E-16 T 12-10-2018 IPR035956 RimP, N-terminal domain superfamily AMJ96_CH00122 6e936550e17f74975258c62d631fcfce 198 SUPERFAMILY SSF75420 12 97 5.1E-21 T 12-10-2018 IPR035956 RimP, N-terminal domain superfamily AMJ96_CH00122 6e936550e17f74975258c62d631fcfce 198 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 20 171 21.121 T 12-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 AMJ96_PB00300 ce6bcd7dab27fb6c5b41f919e0369df4 105 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 102 1.2E-20 T 12-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AMJ96_PB00300 ce6bcd7dab27fb6c5b41f919e0369df4 105 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 87 104 - T 12-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 AMJ96_PB00300 ce6bcd7dab27fb6c5b41f919e0369df4 105 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 2 104 3.5E-33 T 12-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 AMJ96_PB00300 ce6bcd7dab27fb6c5b41f919e0369df4 105 Gene3D G3DSA:2.60.300.12 1 105 3.7E-30 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMJ96_PB00300 ce6bcd7dab27fb6c5b41f919e0369df4 105 SUPERFAMILY SSF89360 1 94 9.61E-26 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMJ96_PC00314 8678e516d24d69e813475731403a5bee 175 SUPERFAMILY SSF46785 28 165 6.34E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00314 8678e516d24d69e813475731403a5bee 175 Pfam PF13463 Winged helix DNA-binding domain 60 122 3.0E-16 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_PC00314 8678e516d24d69e813475731403a5bee 175 PIRSF PIRSF036158 1 175 9.0E-64 T 12-10-2018 IPR014601 Transcriptional regulator with MarR-type HTH domain AMJ96_PC00314 8678e516d24d69e813475731403a5bee 175 Gene3D G3DSA:1.10.10.10 36 167 2.9E-8 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00323 965b6fc4689e3c9cff58b7c898821706 573 SUPERFAMILY SSF52540 12 268 4.9E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00323 965b6fc4689e3c9cff58b7c898821706 573 ProSitePatterns PS00211 ABC transporters family signature. 170 184 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00323 965b6fc4689e3c9cff58b7c898821706 573 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 250 283 0.0045 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PD00323 965b6fc4689e3c9cff58b7c898821706 573 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 520 557 7.0E-8 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PD00323 965b6fc4689e3c9cff58b7c898821706 573 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00323 965b6fc4689e3c9cff58b7c898821706 573 SUPERFAMILY SSF52540 296 540 3.59E-67 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00323 965b6fc4689e3c9cff58b7c898821706 573 Pfam PF00005 ABC transporter 33 197 3.6E-24 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00323 965b6fc4689e3c9cff58b7c898821706 573 SMART SM00382 321 518 2.5E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00323 965b6fc4689e3c9cff58b7c898821706 573 SMART SM00382 41 247 6.2E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00323 965b6fc4689e3c9cff58b7c898821706 573 Gene3D G3DSA:3.40.50.300 295 572 2.7E-82 T 12-10-2018 AMJ96_PD00323 965b6fc4689e3c9cff58b7c898821706 573 Gene3D G3DSA:3.40.50.300 10 294 1.3E-81 T 12-10-2018 AMJ96_PD00323 965b6fc4689e3c9cff58b7c898821706 573 Pfam PF00005 ABC transporter 312 469 1.2E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03816 88c05f4c325859da91dbb774f60b4e32 324 Pfam PF12146 Serine aminopeptidase, S33 42 294 5.1E-47 T 12-10-2018 IPR022742 Serine aminopeptidase, S33 AMJ96_CH03816 88c05f4c325859da91dbb774f60b4e32 324 SUPERFAMILY SSF53474 10 304 9.46E-40 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH03816 88c05f4c325859da91dbb774f60b4e32 324 Gene3D G3DSA:3.40.50.1820 12 311 1.3E-48 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH03816 88c05f4c325859da91dbb774f60b4e32 324 PRINTS PR00111 Alpha/beta hydrolase fold signature 124 137 6.9E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH03816 88c05f4c325859da91dbb774f60b4e32 324 PRINTS PR00111 Alpha/beta hydrolase fold signature 70 85 6.9E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH03816 88c05f4c325859da91dbb774f60b4e32 324 PRINTS PR00111 Alpha/beta hydrolase fold signature 138 151 6.9E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH03816 88c05f4c325859da91dbb774f60b4e32 324 PRINTS PR00111 Alpha/beta hydrolase fold signature 251 265 6.9E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PD00493 e5fbe17ad1ff27c4a7b547c7302f13d2 264 SUPERFAMILY SSF51735 6 149 4.26E-17 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00493 e5fbe17ad1ff27c4a7b547c7302f13d2 264 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 6 93 6.0E-8 T 12-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal AMJ96_PD00493 e5fbe17ad1ff27c4a7b547c7302f13d2 264 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 5 260 18.25 T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMJ96_PD00493 e5fbe17ad1ff27c4a7b547c7302f13d2 264 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 156 259 3.3E-22 T 12-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMJ96_PD00493 e5fbe17ad1ff27c4a7b547c7302f13d2 264 Gene3D G3DSA:3.40.50.720 1 157 9.8E-28 T 12-10-2018 AMJ96_PD00493 e5fbe17ad1ff27c4a7b547c7302f13d2 264 Gene3D G3DSA:1.10.3730.10 158 263 1.2E-21 T 12-10-2018 AMJ96_PD00493 e5fbe17ad1ff27c4a7b547c7302f13d2 264 PIRSF PIRSF000193 5 263 5.7E-48 T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMJ96_PD00493 e5fbe17ad1ff27c4a7b547c7302f13d2 264 SUPERFAMILY SSF48179 156 262 1.11E-21 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_CH03276 3d46f153c0baab4f1f77d48443fb5833 258 Gene3D G3DSA:3.40.50.720 1 258 2.9E-84 T 12-10-2018 AMJ96_CH03276 3d46f153c0baab4f1f77d48443fb5833 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH03276 3d46f153c0baab4f1f77d48443fb5833 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 256 1.2E-59 T 12-10-2018 AMJ96_CH03276 3d46f153c0baab4f1f77d48443fb5833 258 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 3 257 2.0E-116 T 12-10-2018 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 AMJ96_CH03276 3d46f153c0baab4f1f77d48443fb5833 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 9.3E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03276 3d46f153c0baab4f1f77d48443fb5833 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 9.3E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03276 3d46f153c0baab4f1f77d48443fb5833 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 9.3E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03276 3d46f153c0baab4f1f77d48443fb5833 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.9E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03276 3d46f153c0baab4f1f77d48443fb5833 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.9E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03276 3d46f153c0baab4f1f77d48443fb5833 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.9E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03276 3d46f153c0baab4f1f77d48443fb5833 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 1.9E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03276 3d46f153c0baab4f1f77d48443fb5833 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 1.9E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03276 3d46f153c0baab4f1f77d48443fb5833 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.9E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03276 3d46f153c0baab4f1f77d48443fb5833 258 SUPERFAMILY SSF51735 3 257 3.26E-79 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00100 ab899a555fa2ea7f599b6818a7f69763 355 Gene3D G3DSA:2.40.50.100 239 348 7.0E-21 T 12-10-2018 AMJ96_PD00100 ab899a555fa2ea7f599b6818a7f69763 355 SMART SM00382 28 212 4.1E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00100 ab899a555fa2ea7f599b6818a7f69763 355 SUPERFAMILY SSF52540 4 242 1.68E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00100 ab899a555fa2ea7f599b6818a7f69763 355 Gene3D G3DSA:3.40.50.300 1 238 3.6E-76 T 12-10-2018 AMJ96_PD00100 ab899a555fa2ea7f599b6818a7f69763 355 Pfam PF00005 ABC transporter 20 161 3.5E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00100 ab899a555fa2ea7f599b6818a7f69763 355 Gene3D G3DSA:2.40.50.140 292 336 7.0E-21 T 12-10-2018 AMJ96_PD00100 ab899a555fa2ea7f599b6818a7f69763 355 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00100 ab899a555fa2ea7f599b6818a7f69763 355 Pfam PF08402 TOBE domain 279 345 2.3E-9 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_PD00100 ab899a555fa2ea7f599b6818a7f69763 355 SUPERFAMILY SSF50331 236 353 1.24E-27 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH00871 27fbdd67944dc37346477247c71f85cf 575 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 165 270 1.0E-5 T 12-10-2018 IPR000014 PAS domain AMJ96_CH00871 27fbdd67944dc37346477247c71f85cf 575 Pfam PF00072 Response regulator receiver domain 446 559 2.6E-19 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00871 27fbdd67944dc37346477247c71f85cf 575 SMART SM00091 26 93 25.0 T 12-10-2018 IPR000014 PAS domain AMJ96_CH00871 27fbdd67944dc37346477247c71f85cf 575 SMART SM00091 162 228 9.2E-7 T 12-10-2018 IPR000014 PAS domain AMJ96_CH00871 27fbdd67944dc37346477247c71f85cf 575 Gene3D G3DSA:3.30.450.20 23 159 4.7E-5 T 12-10-2018 AMJ96_CH00871 27fbdd67944dc37346477247c71f85cf 575 Gene3D G3DSA:3.30.450.20 160 270 4.5E-13 T 12-10-2018 AMJ96_CH00871 27fbdd67944dc37346477247c71f85cf 575 Pfam PF08448 PAS fold 168 255 1.7E-12 T 12-10-2018 IPR013656 PAS fold-4 AMJ96_CH00871 27fbdd67944dc37346477247c71f85cf 575 SUPERFAMILY SSF52172 442 564 5.55E-32 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH00871 27fbdd67944dc37346477247c71f85cf 575 Pfam PF12860 PAS fold 33 152 8.4E-9 T 12-10-2018 AMJ96_CH00871 27fbdd67944dc37346477247c71f85cf 575 SUPERFAMILY SSF55785 144 270 1.45E-15 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH00871 27fbdd67944dc37346477247c71f85cf 575 SMART SM00448 444 559 9.2E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00871 27fbdd67944dc37346477247c71f85cf 575 Gene3D G3DSA:3.40.50.2300 436 565 4.2E-33 T 12-10-2018 AMJ96_CH01246 72f60c80da6771ddd92e8d14ef3e57aa 200 PIRSF PIRSF000349 1 200 1.6E-73 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMJ96_CH01246 72f60c80da6771ddd92e8d14ef3e57aa 200 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 160 167 - T 12-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMJ96_CH01246 72f60c80da6771ddd92e8d14ef3e57aa 200 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 85 1.3E-27 T 12-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMJ96_CH01246 72f60c80da6771ddd92e8d14ef3e57aa 200 SUPERFAMILY SSF54719 88 199 7.99E-40 T 12-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMJ96_CH01246 72f60c80da6771ddd92e8d14ef3e57aa 200 SUPERFAMILY SSF46609 1 85 8.25E-31 T 12-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMJ96_CH01246 72f60c80da6771ddd92e8d14ef3e57aa 200 Gene3D G3DSA:1.10.287.990 20 84 6.4E-20 T 12-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMJ96_CH01246 72f60c80da6771ddd92e8d14ef3e57aa 200 PRINTS PR01703 Manganese superoxide dismutase signature 68 81 9.2E-23 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMJ96_CH01246 72f60c80da6771ddd92e8d14ef3e57aa 200 PRINTS PR01703 Manganese superoxide dismutase signature 158 170 9.2E-23 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMJ96_CH01246 72f60c80da6771ddd92e8d14ef3e57aa 200 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 9.2E-23 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMJ96_CH01246 72f60c80da6771ddd92e8d14ef3e57aa 200 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 9.2E-23 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMJ96_CH01246 72f60c80da6771ddd92e8d14ef3e57aa 200 PRINTS PR01703 Manganese superoxide dismutase signature 122 130 9.2E-23 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMJ96_CH01246 72f60c80da6771ddd92e8d14ef3e57aa 200 Gene3D G3DSA:2.40.500.20 90 200 3.5E-39 T 12-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMJ96_CH01246 72f60c80da6771ddd92e8d14ef3e57aa 200 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 95 194 7.1E-33 T 12-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 AMJ96_PC00191 fe20e879b378ca47d5cbf68eaa31c855 422 Gene3D G3DSA:1.20.140.10 248 420 6.7E-48 T 12-10-2018 AMJ96_PC00191 fe20e879b378ca47d5cbf68eaa31c855 422 PIRSF PIRSF016578 25 412 2.5E-23 T 12-10-2018 AMJ96_PC00191 fe20e879b378ca47d5cbf68eaa31c855 422 TIGRFAM TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family 33 422 8.7E-178 T 12-10-2018 IPR023922 Sulphate-starvation-induced SfnB AMJ96_PC00191 fe20e879b378ca47d5cbf68eaa31c855 422 SUPERFAMILY SSF56645 47 247 2.23E-39 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMJ96_PC00191 fe20e879b378ca47d5cbf68eaa31c855 422 Gene3D G3DSA:1.10.540.10 40 145 1.2E-19 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMJ96_PC00191 fe20e879b378ca47d5cbf68eaa31c855 422 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 56 138 2.2E-8 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMJ96_PC00191 fe20e879b378ca47d5cbf68eaa31c855 422 Gene3D G3DSA:2.40.110.10 148 247 2.7E-23 T 12-10-2018 AMJ96_PC00191 fe20e879b378ca47d5cbf68eaa31c855 422 SUPERFAMILY SSF47203 260 421 2.74E-21 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMJ96_PC00191 fe20e879b378ca47d5cbf68eaa31c855 422 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 265 397 4.7E-23 T 12-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_CH01337 fc964d8bca41ca2caadca1f68403db2c 767 Gene3D G3DSA:2.10.70.100 327 372 3.1E-6 T 12-10-2018 AMJ96_CH01337 fc964d8bca41ca2caadca1f68403db2c 767 SMART SM00388 541 610 2.3E-24 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH01337 fc964d8bca41ca2caadca1f68403db2c 767 PRINTS PR00344 Bacterial sensor protein C-terminal signature 751 764 8.6E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH01337 fc964d8bca41ca2caadca1f68403db2c 767 PRINTS PR00344 Bacterial sensor protein C-terminal signature 727 745 8.6E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH01337 fc964d8bca41ca2caadca1f68403db2c 767 PRINTS PR00344 Bacterial sensor protein C-terminal signature 692 706 8.6E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH01337 fc964d8bca41ca2caadca1f68403db2c 767 SUPERFAMILY SSF55785 267 372 1.92E-14 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH01337 fc964d8bca41ca2caadca1f68403db2c 767 Pfam PF00512 His Kinase A (phospho-acceptor) domain 541 610 1.5E-19 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH01337 fc964d8bca41ca2caadca1f68403db2c 767 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 279 376 3.9E-6 T 12-10-2018 IPR000014 PAS domain AMJ96_CH01337 fc964d8bca41ca2caadca1f68403db2c 767 SMART SM00086 329 370 1.6E-7 T 12-10-2018 IPR001610 PAC motif AMJ96_CH01337 fc964d8bca41ca2caadca1f68403db2c 767 Pfam PF12860 PAS fold 391 490 2.0E-11 T 12-10-2018 AMJ96_CH01337 fc964d8bca41ca2caadca1f68403db2c 767 Gene3D G3DSA:3.30.450.20 374 492 3.3E-8 T 12-10-2018 AMJ96_CH01337 fc964d8bca41ca2caadca1f68403db2c 767 SUPERFAMILY SSF55785 367 484 3.43E-9 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH01337 fc964d8bca41ca2caadca1f68403db2c 767 Gene3D G3DSA:1.10.287.130 506 605 1.1E-28 T 12-10-2018 AMJ96_CH01337 fc964d8bca41ca2caadca1f68403db2c 767 SUPERFAMILY SSF47384 529 611 1.79E-21 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH01337 fc964d8bca41ca2caadca1f68403db2c 767 SMART SM00387 655 767 4.7E-32 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH01337 fc964d8bca41ca2caadca1f68403db2c 767 SUPERFAMILY SSF55874 599 764 4.06E-44 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH01337 fc964d8bca41ca2caadca1f68403db2c 767 Gene3D G3DSA:3.30.450.20 251 320 5.2E-10 T 12-10-2018 AMJ96_CH01337 fc964d8bca41ca2caadca1f68403db2c 767 Gene3D G3DSA:3.30.565.10 606 765 5.3E-40 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH01337 fc964d8bca41ca2caadca1f68403db2c 767 Pfam PF08447 PAS fold 278 363 4.6E-13 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 AMJ96_CH01337 fc964d8bca41ca2caadca1f68403db2c 767 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 656 765 4.5E-25 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH01240 2388b1ae63954b4fd7f655e805618ea1 205 Gene3D G3DSA:1.10.10.60 4 71 3.0E-23 T 12-10-2018 AMJ96_CH01240 2388b1ae63954b4fd7f655e805618ea1 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 62 3.5E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH01240 2388b1ae63954b4fd7f655e805618ea1 205 SUPERFAMILY SSF46689 6 88 1.23E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH01240 2388b1ae63954b4fd7f655e805618ea1 205 Gene3D G3DSA:1.10.357.10 72 200 1.6E-20 T 12-10-2018 AMJ96_CH01240 2388b1ae63954b4fd7f655e805618ea1 205 SUPERFAMILY SSF48498 89 199 4.13E-19 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH01240 2388b1ae63954b4fd7f655e805618ea1 205 ProSitePatterns PS01081 TetR-type HTH domain signature. 30 60 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMJ96_CH03907 ff81839bc866dff9f9aae086ca837c9a 311 SMART SM00342 18 101 1.0E-24 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH03907 ff81839bc866dff9f9aae086ca837c9a 311 Pfam PF12833 Helix-turn-helix domain 25 103 1.8E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH03907 ff81839bc866dff9f9aae086ca837c9a 311 Pfam PF06445 GyrI-like small molecule binding domain 127 276 2.3E-30 T 12-10-2018 IPR029442 GyrI-like small molecule binding domain AMJ96_CH03907 ff81839bc866dff9f9aae086ca837c9a 311 SUPERFAMILY SSF55136 126 276 7.32E-31 T 12-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily AMJ96_CH03907 ff81839bc866dff9f9aae086ca837c9a 311 SUPERFAMILY SSF46689 3 52 5.11E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03907 ff81839bc866dff9f9aae086ca837c9a 311 SUPERFAMILY SSF46689 54 106 4.44E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03907 ff81839bc866dff9f9aae086ca837c9a 311 Gene3D G3DSA:3.20.80.10 127 284 3.6E-33 T 12-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily AMJ96_CH03907 ff81839bc866dff9f9aae086ca837c9a 311 Gene3D G3DSA:1.10.10.60 55 117 3.6E-13 T 12-10-2018 AMJ96_CH03907 ff81839bc866dff9f9aae086ca837c9a 311 SMART SM00871 126 277 8.2E-34 T 12-10-2018 IPR010499 Bacterial transcription activator, effector binding AMJ96_CH03907 ff81839bc866dff9f9aae086ca837c9a 311 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 55 97 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_CH03907 ff81839bc866dff9f9aae086ca837c9a 311 Gene3D G3DSA:1.10.10.60 1 54 1.3E-16 T 12-10-2018 AMJ96_CH03907 ff81839bc866dff9f9aae086ca837c9a 311 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 70 85 7.0E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_CH03907 ff81839bc866dff9f9aae086ca837c9a 311 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 85 101 7.0E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_CH04050 eaf7cc81d34e14af8b69833fecfad582 192 Pfam PF04752 ChaC-like protein 20 187 7.0E-55 T 12-10-2018 IPR006840 Glutathione-specific gamma-glutamylcyclotransferase GO:0003839|GO:0006751 KEGG: 00480+4.3.2.7|MetaCyc: PWY-7942|Reactome: R-HSA-174403 AMJ96_CH04050 eaf7cc81d34e14af8b69833fecfad582 192 Gene3D G3DSA:3.10.490.10 7 189 3.5E-10 T 12-10-2018 AMJ96_CH04050 eaf7cc81d34e14af8b69833fecfad582 192 SUPERFAMILY SSF110857 20 133 9.55E-14 T 12-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily AMJ96_CH02787 4c7717e22569dbb72142d0c0c169f73c 274 Gene3D G3DSA:1.10.260.40 23 103 2.5E-6 T 12-10-2018 AMJ96_CH02787 4c7717e22569dbb72142d0c0c169f73c 274 Gene3D G3DSA:3.30.450.180 108 272 2.3E-18 T 12-10-2018 AMJ96_CH02787 4c7717e22569dbb72142d0c0c169f73c 274 SUPERFAMILY SSF47413 32 78 7.29E-7 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH02787 4c7717e22569dbb72142d0c0c169f73c 274 SMART SM00530 14 85 3.2E-6 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH02787 4c7717e22569dbb72142d0c0c169f73c 274 Pfam PF13560 Helix-turn-helix domain 10 88 6.4E-16 T 12-10-2018 AMJ96_CH03200 f8c89dd53e2b4c19070ad892f26c0a2d 76 SUPERFAMILY SSF47598 4 45 8.67E-5 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMJ96_PD00441 8496f6e8477041ccc7afef4eff3e0946 307 Gene3D G3DSA:3.40.50.720 16 307 2.5E-101 T 12-10-2018 AMJ96_PD00441 8496f6e8477041ccc7afef4eff3e0946 307 Gene3D G3DSA:3.40.50.720 91 273 2.5E-101 T 12-10-2018 AMJ96_PD00441 8496f6e8477041ccc7afef4eff3e0946 307 SUPERFAMILY SSF51735 94 273 1.07E-46 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00441 8496f6e8477041ccc7afef4eff3e0946 307 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 101 272 2.4E-44 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMJ96_CH03203 fcfdc27522b679521265a2b37fd91c9d 548 Gene3D G3DSA:1.20.58.220 440 535 3.9E-10 T 12-10-2018 IPR038078 PhoU-like domain superfamily AMJ96_CH03203 fcfdc27522b679521265a2b37fd91c9d 548 Gene3D G3DSA:1.20.58.220 333 427 6.6E-11 T 12-10-2018 IPR038078 PhoU-like domain superfamily AMJ96_CH03203 fcfdc27522b679521265a2b37fd91c9d 548 Pfam PF01895 PhoU domain 445 529 1.8E-7 T 12-10-2018 IPR026022 PhoU domain AMJ96_CH03203 fcfdc27522b679521265a2b37fd91c9d 548 Pfam PF01895 PhoU domain 342 420 9.9E-9 T 12-10-2018 IPR026022 PhoU domain AMJ96_CH03203 fcfdc27522b679521265a2b37fd91c9d 548 TIGRFAM TIGR01013 2a58: sodium-dependent inorganic phosphate (Pi) transporter 70 521 1.3E-122 T 12-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 AMJ96_CH03203 fcfdc27522b679521265a2b37fd91c9d 548 Pfam PF02690 Na+/Pi-cotransporter 16 150 1.0E-31 T 12-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 AMJ96_CH03203 fcfdc27522b679521265a2b37fd91c9d 548 SUPERFAMILY SSF109755 327 532 2.93E-36 T 12-10-2018 AMJ96_CH03223 d00909e47a4ba15893f8f5c0cc42d2c4 572 Gene3D G3DSA:3.30.160.270 387 564 8.7E-55 T 12-10-2018 AMJ96_CH03223 d00909e47a4ba15893f8f5c0cc42d2c4 572 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 49 65 - T 12-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMJ96_CH03223 d00909e47a4ba15893f8f5c0cc42d2c4 572 SMART SM00917 432 565 1.5E-30 T 12-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMJ96_CH03223 d00909e47a4ba15893f8f5c0cc42d2c4 572 SUPERFAMILY SSF51569 31 338 3.85E-94 T 12-10-2018 AMJ96_CH03223 d00909e47a4ba15893f8f5c0cc42d2c4 572 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 18 564 1.0E-233 T 12-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMJ96_CH03223 d00909e47a4ba15893f8f5c0cc42d2c4 572 SUPERFAMILY SSF89000 398 447 1.73E-13 T 12-10-2018 AMJ96_CH03223 d00909e47a4ba15893f8f5c0cc42d2c4 572 SUPERFAMILY SSF110921 454 564 2.09E-34 T 12-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMJ96_CH03223 d00909e47a4ba15893f8f5c0cc42d2c4 572 Pfam PF00682 HMGL-like 43 320 3.3E-73 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AMJ96_CH03223 d00909e47a4ba15893f8f5c0cc42d2c4 572 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 251 264 - T 12-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMJ96_CH03223 d00909e47a4ba15893f8f5c0cc42d2c4 572 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 17 566 53.421 T 12-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMJ96_CH03223 d00909e47a4ba15893f8f5c0cc42d2c4 572 Pfam PF08502 LeuA allosteric (dimerisation) domain 437 565 1.1E-28 T 12-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMJ96_CH03223 d00909e47a4ba15893f8f5c0cc42d2c4 572 Gene3D G3DSA:3.20.20.70 21 386 8.5E-148 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH01603 d5caf82e6cd3c826dbce87c38eebfc72 154 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 4.9E-60 T 12-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01603 d5caf82e6cd3c826dbce87c38eebfc72 154 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 142 28.213 T 12-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01603 d5caf82e6cd3c826dbce87c38eebfc72 154 Gene3D G3DSA:3.90.1180.10 1 143 4.6E-59 T 12-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01603 d5caf82e6cd3c826dbce87c38eebfc72 154 PIRSF PIRSF002181 1 154 1.7E-51 T 12-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01603 d5caf82e6cd3c826dbce87c38eebfc72 154 SUPERFAMILY SSF52161 5 144 1.7E-57 T 12-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01603 d5caf82e6cd3c826dbce87c38eebfc72 154 Pfam PF00572 Ribosomal protein L13 14 138 3.3E-53 T 12-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AMJ96_PC00293 e1a12d0e7544b67624b2c353f54c5bf9 293 SUPERFAMILY SSF51735 3 160 1.09E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00293 e1a12d0e7544b67624b2c353f54c5bf9 293 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 162 288 2.2E-40 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMJ96_PC00293 e1a12d0e7544b67624b2c353f54c5bf9 293 Gene3D G3DSA:3.40.50.720 1 161 2.5E-52 T 12-10-2018 AMJ96_PC00293 e1a12d0e7544b67624b2c353f54c5bf9 293 PIRSF PIRSF000103 1 293 4.0E-83 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMJ96_PC00293 e1a12d0e7544b67624b2c353f54c5bf9 293 SUPERFAMILY SSF48179 160 291 5.89E-42 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_PC00293 e1a12d0e7544b67624b2c353f54c5bf9 293 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 12-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMJ96_PC00293 e1a12d0e7544b67624b2c353f54c5bf9 293 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 159 6.2E-50 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMJ96_PC00293 e1a12d0e7544b67624b2c353f54c5bf9 293 Gene3D G3DSA:1.10.1040.10 162 293 1.2E-44 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMJ96_PC00293 e1a12d0e7544b67624b2c353f54c5bf9 293 TIGRFAM TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase 6 290 4.8E-131 T 12-10-2018 IPR011548 3-hydroxyisobutyrate dehydrogenase GO:0008442|GO:0051287|GO:0055114 KEGG: 00280+1.1.1.31|Reactome: R-HSA-70895 AMJ96_CH04288 145115558d631aa4955c803f1bb37a1c 383 PIRSF PIRSF038994 3 383 8.7E-98 T 12-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 AMJ96_CH04288 145115558d631aa4955c803f1bb37a1c 383 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 6 380 3.1E-89 T 12-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 AMJ96_CH04288 145115558d631aa4955c803f1bb37a1c 383 Gene3D G3DSA:3.20.20.140 56 349 9.3E-111 T 12-10-2018 AMJ96_CH04288 145115558d631aa4955c803f1bb37a1c 383 SUPERFAMILY SSF51338 6 54 1.3E-8 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH04288 145115558d631aa4955c803f1bb37a1c 383 Pfam PF01979 Amidohydrolase family 52 381 3.3E-23 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMJ96_CH04288 145115558d631aa4955c803f1bb37a1c 383 Gene3D G3DSA:2.30.40.10 9 380 9.3E-111 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH04288 145115558d631aa4955c803f1bb37a1c 383 SUPERFAMILY SSF51556 55 353 5.15E-85 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_PD00289 6dad51b109ceea087b7b86058d3839ce 498 SUPERFAMILY SSF53720 27 495 4.71E-156 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_PD00289 6dad51b109ceea087b7b86058d3839ce 498 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 296 307 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMJ96_PD00289 6dad51b109ceea087b7b86058d3839ce 498 Gene3D G3DSA:3.40.309.10 272 461 3.7E-166 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_PD00289 6dad51b109ceea087b7b86058d3839ce 498 Pfam PF00171 Aldehyde dehydrogenase family 33 491 1.8E-158 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_PD00289 6dad51b109ceea087b7b86058d3839ce 498 Gene3D G3DSA:3.40.605.10 39 486 3.7E-166 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_CH02417 a868d4d760451431fcf68bc9b9805a96 250 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 1 182 5.9E-21 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMJ96_CH02417 a868d4d760451431fcf68bc9b9805a96 250 SUPERFAMILY SSF53254 1 180 9.03E-31 T 12-10-2018 IPR029033 Histidine phosphatase superfamily AMJ96_CH02417 a868d4d760451431fcf68bc9b9805a96 250 PIRSF PIRSF000709 8 173 5.3E-9 T 12-10-2018 AMJ96_CH02417 a868d4d760451431fcf68bc9b9805a96 250 Gene3D G3DSA:3.40.50.1240 1 196 1.4E-28 T 12-10-2018 IPR029033 Histidine phosphatase superfamily AMJ96_PD00600 3299cfaa7c6056bc4128e0f747d93e88 410 SUPERFAMILY SSF51604 118 364 3.01E-71 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_PD00600 3299cfaa7c6056bc4128e0f747d93e88 410 SUPERFAMILY SSF54826 1 130 3.84E-28 T 12-10-2018 AMJ96_PD00600 3299cfaa7c6056bc4128e0f747d93e88 410 SMART SM00922 142 238 5.1E-20 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMJ96_PD00600 3299cfaa7c6056bc4128e0f747d93e88 410 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 38 130 7.6E-17 T 12-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMJ96_PD00600 3299cfaa7c6056bc4128e0f747d93e88 410 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 105 130 - T 12-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AMJ96_PD00600 3299cfaa7c6056bc4128e0f747d93e88 410 Gene3D G3DSA:3.30.390.10 1 128 1.4E-30 T 12-10-2018 IPR029017 Enolase-like, N-terminal AMJ96_PD00600 3299cfaa7c6056bc4128e0f747d93e88 410 Pfam PF13378 Enolase C-terminal domain-like 147 358 1.2E-57 T 12-10-2018 IPR029065 Enolase C-terminal domain-like AMJ96_PD00600 3299cfaa7c6056bc4128e0f747d93e88 410 Gene3D G3DSA:3.20.20.120 129 365 8.3E-74 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 479 8.1E-177 T 12-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.0E-37 T 12-10-2018 AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 151 169 1.0E-37 T 12-10-2018 AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 278 294 1.0E-37 T 12-10-2018 AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 190 208 1.0E-37 T 12-10-2018 AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 306 328 1.0E-37 T 12-10-2018 AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 362 470 5.5E-39 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 Gene3D G3DSA:3.50.50.60 5 346 6.5E-112 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 Gene3D G3DSA:3.50.50.60 166 288 6.5E-112 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 PIRSF PIRSF000350 1 477 5.1E-76 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.4E-66 T 12-10-2018 AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 1.4E-66 T 12-10-2018 AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 438 1.4E-66 T 12-10-2018 AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 154 163 1.4E-66 T 12-10-2018 AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 358 379 1.4E-66 T 12-10-2018 AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 190 215 1.4E-66 T 12-10-2018 AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 279 293 1.4E-66 T 12-10-2018 AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 321 328 1.4E-66 T 12-10-2018 AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 445 465 1.4E-66 T 12-10-2018 AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 12-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 341 1.0E-68 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 Gene3D G3DSA:3.30.390.30 361 480 3.5E-44 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 SUPERFAMILY SSF51905 1 389 1.3E-71 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02007 131e6bcf1eeeb517a70819828af34c67 481 SUPERFAMILY SSF55424 362 478 2.41E-41 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMJ96_PC00438 6bcdf4ff2e2713b9aea4600e447a5f51 425 Gene3D G3DSA:3.30.390.10 1 130 1.8E-56 T 12-10-2018 IPR029017 Enolase-like, N-terminal AMJ96_PC00438 6bcdf4ff2e2713b9aea4600e447a5f51 425 Gene3D G3DSA:3.20.20.120 131 425 6.6E-108 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_PC00438 6bcdf4ff2e2713b9aea4600e447a5f51 425 Pfam PF13378 Enolase C-terminal domain-like 201 416 5.8E-58 T 12-10-2018 IPR029065 Enolase C-terminal domain-like AMJ96_PC00438 6bcdf4ff2e2713b9aea4600e447a5f51 425 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 34 135 6.0E-6 T 12-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMJ96_PC00438 6bcdf4ff2e2713b9aea4600e447a5f51 425 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 244 275 - T 12-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AMJ96_PC00438 6bcdf4ff2e2713b9aea4600e447a5f51 425 SUPERFAMILY SSF51604 183 424 1.83E-68 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_PC00438 6bcdf4ff2e2713b9aea4600e447a5f51 425 SMART SM00922 198 294 8.2E-26 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMJ96_PC00438 6bcdf4ff2e2713b9aea4600e447a5f51 425 SUPERFAMILY SSF54826 2 138 1.45E-39 T 12-10-2018 AMJ96_CH03566 1406113f2e241ea4296b00b405c0c8be 303 SUPERFAMILY SSF46785 4 85 2.44E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03566 1406113f2e241ea4296b00b405c0c8be 303 Gene3D G3DSA:1.10.10.10 3 89 9.7E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03566 1406113f2e241ea4296b00b405c0c8be 303 SUPERFAMILY SSF53850 90 295 1.7E-43 T 12-10-2018 AMJ96_CH03566 1406113f2e241ea4296b00b405c0c8be 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 2.9E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03566 1406113f2e241ea4296b00b405c0c8be 303 Gene3D G3DSA:3.40.190.10 91 291 4.5E-66 T 12-10-2018 AMJ96_CH03566 1406113f2e241ea4296b00b405c0c8be 303 Gene3D G3DSA:3.40.190.10 162 266 4.5E-66 T 12-10-2018 AMJ96_CH03566 1406113f2e241ea4296b00b405c0c8be 303 Pfam PF03466 LysR substrate binding domain 89 293 2.4E-39 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH01771 198c52daac0d1b28e1a3c44f34640633 389 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 132 2.3E-24 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_CH01771 198c52daac0d1b28e1a3c44f34640633 389 Gene3D G3DSA:3.30.360.10 138 386 8.4E-56 T 12-10-2018 AMJ96_CH01771 198c52daac0d1b28e1a3c44f34640633 389 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 144 211 3.6E-8 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AMJ96_CH01771 198c52daac0d1b28e1a3c44f34640633 389 SUPERFAMILY SSF55347 137 327 1.64E-29 T 12-10-2018 AMJ96_CH01771 198c52daac0d1b28e1a3c44f34640633 389 SUPERFAMILY SSF51735 4 160 4.13E-45 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01771 198c52daac0d1b28e1a3c44f34640633 389 Gene3D G3DSA:3.40.50.720 1 134 3.7E-36 T 12-10-2018 AMJ96_CH03428 541d9c94a825ab4a9d622f3df628616f 231 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 48 209 7.0E-16 T 12-10-2018 IPR013830 SGNH hydrolase-type esterase domain AMJ96_CH03428 541d9c94a825ab4a9d622f3df628616f 231 Gene3D G3DSA:3.40.50.1110 32 217 4.5E-25 T 12-10-2018 IPR036514 SGNH hydrolase superfamily AMJ96_CH03428 541d9c94a825ab4a9d622f3df628616f 231 SUPERFAMILY SSF52266 43 211 6.66E-29 T 12-10-2018 AMJ96_PD00521 1c9b0be03d950d947071524afb1f4e52 422 Gene3D G3DSA:3.50.50.60 105 410 1.2E-49 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00521 1c9b0be03d950d947071524afb1f4e52 422 Gene3D G3DSA:3.30.9.10 134 367 1.2E-49 T 12-10-2018 AMJ96_PD00521 1c9b0be03d950d947071524afb1f4e52 422 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 416 47.518 T 12-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 AMJ96_PD00521 1c9b0be03d950d947071524afb1f4e52 422 Pfam PF01266 FAD dependent oxidoreductase 2 403 1.5E-72 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_PD00521 1c9b0be03d950d947071524afb1f4e52 422 Gene3D G3DSA:3.50.50.60 1 73 5.9E-11 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00521 1c9b0be03d950d947071524afb1f4e52 422 SUPERFAMILY SSF54373 276 365 2.75E-14 T 12-10-2018 AMJ96_PD00521 1c9b0be03d950d947071524afb1f4e52 422 SUPERFAMILY SSF51905 1 421 8.8E-54 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00356 c5f2204b8a19f3710f0b6006fda3c4a0 313 Gene3D G3DSA:1.10.3720.10 86 305 6.9E-26 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00356 c5f2204b8a19f3710f0b6006fda3c4a0 313 SUPERFAMILY SSF161098 93 297 9.37E-21 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00356 c5f2204b8a19f3710f0b6006fda3c4a0 313 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 313 5.1E-42 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00410 f294ed0d19263286e331c91ecb1c6545 222 Gene3D G3DSA:1.10.10.10 122 222 1.4E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00410 f294ed0d19263286e331c91ecb1c6545 222 SMART SM00862 145 218 4.2E-17 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_PD00410 f294ed0d19263286e331c91ecb1c6545 222 SUPERFAMILY SSF52172 1 165 1.21E-36 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PD00410 f294ed0d19263286e331c91ecb1c6545 222 Pfam PF00072 Response regulator receiver domain 4 113 3.1E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00410 f294ed0d19263286e331c91ecb1c6545 222 SMART SM00448 1 112 1.1E-36 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00410 f294ed0d19263286e331c91ecb1c6545 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 218 8.5E-18 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_PD00410 f294ed0d19263286e331c91ecb1c6545 222 Gene3D G3DSA:3.40.50.2300 1 121 2.0E-39 T 12-10-2018 AMJ96_CH01768 61bfc971a0d0b9ce00ec8c16a5bd90e0 371 SUPERFAMILY SSF50331 236 370 1.58E-24 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH01768 61bfc971a0d0b9ce00ec8c16a5bd90e0 371 Gene3D G3DSA:3.40.50.300 3 221 4.7E-67 T 12-10-2018 AMJ96_CH01768 61bfc971a0d0b9ce00ec8c16a5bd90e0 371 Pfam PF00005 ABC transporter 19 161 3.1E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH01768 61bfc971a0d0b9ce00ec8c16a5bd90e0 371 SUPERFAMILY SSF52540 3 243 3.5E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01768 61bfc971a0d0b9ce00ec8c16a5bd90e0 371 Gene3D G3DSA:2.40.50.940 222 363 2.1E-29 T 12-10-2018 AMJ96_CH01768 61bfc971a0d0b9ce00ec8c16a5bd90e0 371 SMART SM00382 28 210 6.6E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01768 61bfc971a0d0b9ce00ec8c16a5bd90e0 371 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH01768 61bfc971a0d0b9ce00ec8c16a5bd90e0 371 Gene3D G3DSA:2.40.50.140 293 354 2.1E-29 T 12-10-2018 AMJ96_CH02628 8adeafabaa141bf7e24c007499ca53fa 541 SMART SM00052 284 525 2.8E-105 T 12-10-2018 IPR001633 EAL domain AMJ96_CH02628 8adeafabaa141bf7e24c007499ca53fa 541 SUPERFAMILY SSF55073 120 275 4.08E-43 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02628 8adeafabaa141bf7e24c007499ca53fa 541 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 113 272 8.9E-34 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH02628 8adeafabaa141bf7e24c007499ca53fa 541 Gene3D G3DSA:3.30.70.270 111 287 9.6E-52 T 12-10-2018 AMJ96_CH02628 8adeafabaa141bf7e24c007499ca53fa 541 Pfam PF00990 Diguanylate cyclase, GGDEF domain 115 269 1.3E-43 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH02628 8adeafabaa141bf7e24c007499ca53fa 541 Pfam PF00563 EAL domain 290 520 1.4E-69 T 12-10-2018 IPR001633 EAL domain AMJ96_CH02628 8adeafabaa141bf7e24c007499ca53fa 541 SUPERFAMILY SSF141868 290 532 2.35E-84 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH02628 8adeafabaa141bf7e24c007499ca53fa 541 SMART SM00267 104 274 2.5E-53 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH02628 8adeafabaa141bf7e24c007499ca53fa 541 Gene3D G3DSA:3.20.20.450 288 533 8.0E-90 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH01218 3d0c090e6e1376d2d260ff522a4575df 242 Gene3D G3DSA:3.40.30.10 46 206 1.7E-6 T 12-10-2018 AMJ96_CH01218 3d0c090e6e1376d2d260ff522a4575df 242 SUPERFAMILY SSF52833 38 153 1.86E-10 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH01218 3d0c090e6e1376d2d260ff522a4575df 242 Pfam PF05988 Bacterial protein of unknown function (DUF899) 3 231 1.1E-93 T 12-10-2018 IPR010296 Protein of unknown function DUF899, thioredoxin-like AMJ96_PD00411 8058a6dc43843936e5437600d9c57ca8 188 Pfam PF00857 Isochorismatase family 6 146 2.0E-22 T 12-10-2018 IPR000868 Isochorismatase-like GO:0003824 AMJ96_PD00411 8058a6dc43843936e5437600d9c57ca8 188 SUPERFAMILY SSF52499 4 180 2.62E-32 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMJ96_PD00411 8058a6dc43843936e5437600d9c57ca8 188 Gene3D G3DSA:3.40.50.850 1 183 7.0E-34 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 632 650 - T 12-10-2018 IPR028299 ClpA/B, conserved site 2 AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 295 307 - T 12-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 SMART SM00382 598 749 6.1E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 SMART SM00382 199 345 4.6E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 Pfam PF07724 AAA domain (Cdc48 subfamily) 597 761 1.1E-57 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 Gene3D G3DSA:1.10.1780.10 1 150 5.3E-28 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 SMART SM01086 767 856 3.9E-39 T 12-10-2018 IPR019489 Clp ATPase, C-terminal AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 767 847 6.7E-27 T 12-10-2018 IPR019489 Clp ATPase, C-terminal AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 SUPERFAMILY SSF52540 547 848 1.3E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 204 334 4.4E-12 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 67 5.2E-14 T 12-10-2018 IPR004176 Clp, N-terminal AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 7.8E-10 T 12-10-2018 IPR004176 Clp, N-terminal AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 Gene3D G3DSA:3.40.50.300 349 545 2.0E-73 T 12-10-2018 AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 SUPERFAMILY SSF81923 4 156 5.79E-38 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 7 856 0.0 T 12-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 Gene3D G3DSA:1.10.8.60 767 865 2.3E-29 T 12-10-2018 AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 Gene3D G3DSA:3.40.50.300 159 348 6.5E-74 T 12-10-2018 AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 709 723 1.4E-42 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 602 620 1.4E-42 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 647 665 1.4E-42 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 676 694 1.4E-42 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 Gene3D G3DSA:3.40.50.300 551 765 9.3E-89 T 12-10-2018 AMJ96_CH03993 db57b5617fa81e66ec8c5754804e93dd 866 SUPERFAMILY SSF52540 160 546 3.56E-99 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00954 c90819d3f7ee8a2930a3c01d1ef416f2 365 Gene3D G3DSA:3.60.150.10 1 365 1.0E-138 T 12-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMJ96_CH00954 c90819d3f7ee8a2930a3c01d1ef416f2 365 TIGRFAM TIGR00033 aroC: chorismate synthase 10 360 7.8E-122 T 12-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMJ96_CH00954 c90819d3f7ee8a2930a3c01d1ef416f2 365 PIRSF PIRSF001456 3 365 1.2E-127 T 12-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMJ96_CH00954 c90819d3f7ee8a2930a3c01d1ef416f2 365 Pfam PF01264 Chorismate synthase 10 355 1.5E-127 T 12-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMJ96_CH00954 c90819d3f7ee8a2930a3c01d1ef416f2 365 Hamap MF_00300 Chorismate synthase [aroC]. 10 362 35.288 T 12-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMJ96_CH00954 c90819d3f7ee8a2930a3c01d1ef416f2 365 SUPERFAMILY SSF103263 3 360 4.32E-136 T 12-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMJ96_CH00954 c90819d3f7ee8a2930a3c01d1ef416f2 365 ProSitePatterns PS00789 Chorismate synthase signature 3. 329 345 - T 12-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMJ96_CH00954 c90819d3f7ee8a2930a3c01d1ef416f2 365 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 12-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AMJ96_CH00736 3af5d9dbfbd17a8336ae327611248916 299 Gene3D G3DSA:3.40.50.10860 7 285 8.7E-103 T 12-10-2018 AMJ96_CH00736 3af5d9dbfbd17a8336ae327611248916 299 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 4 120 8.6E-35 T 12-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMJ96_CH00736 3af5d9dbfbd17a8336ae327611248916 299 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 269 277 - T 12-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMJ96_CH00736 3af5d9dbfbd17a8336ae327611248916 299 SUPERFAMILY SSF53223 2 121 1.44E-36 T 12-10-2018 AMJ96_CH00736 3af5d9dbfbd17a8336ae327611248916 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 5.8E-78 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMJ96_CH00736 3af5d9dbfbd17a8336ae327611248916 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 206 235 5.8E-78 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMJ96_CH00736 3af5d9dbfbd17a8336ae327611248916 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 265 283 5.8E-78 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMJ96_CH00736 3af5d9dbfbd17a8336ae327611248916 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 248 264 5.8E-78 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMJ96_CH00736 3af5d9dbfbd17a8336ae327611248916 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 157 177 5.8E-78 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMJ96_CH00736 3af5d9dbfbd17a8336ae327611248916 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 5.8E-78 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMJ96_CH00736 3af5d9dbfbd17a8336ae327611248916 299 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 5.8E-78 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMJ96_CH00736 3af5d9dbfbd17a8336ae327611248916 299 SUPERFAMILY SSF51735 122 290 6.47E-51 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00736 3af5d9dbfbd17a8336ae327611248916 299 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 125 290 3.8E-66 T 12-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMJ96_CH00736 3af5d9dbfbd17a8336ae327611248916 299 Hamap MF_01576 Bifunctional protein FolD [folD]. 2 292 37.166 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 AMJ96_CH00736 3af5d9dbfbd17a8336ae327611248916 299 Gene3D G3DSA:3.40.50.720 5 268 8.7E-103 T 12-10-2018 AMJ96_PA00196 7bd919048b17f7446572ed9726bed0f5 698 Pfam PF12450 von Willebrand factor 222 314 2.9E-34 T 12-10-2018 IPR022156 Uncharacterised protein YfbK, N-terminal AMJ96_PA00196 7bd919048b17f7446572ed9726bed0f5 698 Pfam PF00092 von Willebrand factor type A domain 331 499 8.0E-21 T 12-10-2018 IPR002035 von Willebrand factor, type A AMJ96_PA00196 7bd919048b17f7446572ed9726bed0f5 698 SUPERFAMILY SSF53300 328 499 6.41E-33 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMJ96_PA00196 7bd919048b17f7446572ed9726bed0f5 698 SMART SM00327 329 506 1.7E-25 T 12-10-2018 IPR002035 von Willebrand factor, type A AMJ96_PA00196 7bd919048b17f7446572ed9726bed0f5 698 Pfam PF12034 Domain of unknown function (DUF3520) 507 695 2.2E-66 T 12-10-2018 IPR021908 Protein of unknown function DUF3520 AMJ96_PA00196 7bd919048b17f7446572ed9726bed0f5 698 Gene3D G3DSA:3.40.50.410 330 505 2.1E-32 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMJ96_CH01161 b07078c80a1159f839777f742f34e7e0 345 Pfam PF13377 Periplasmic binding protein-like domain 184 344 1.0E-31 T 12-10-2018 AMJ96_CH01161 b07078c80a1159f839777f742f34e7e0 345 SMART SM00354 16 86 5.0E-20 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH01161 b07078c80a1159f839777f742f34e7e0 345 SUPERFAMILY SSF53822 76 344 9.85E-51 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH01161 b07078c80a1159f839777f742f34e7e0 345 SUPERFAMILY SSF47413 16 73 9.09E-16 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH01161 b07078c80a1159f839777f742f34e7e0 345 Gene3D G3DSA:3.40.50.2300 77 320 1.2E-58 T 12-10-2018 AMJ96_CH01161 b07078c80a1159f839777f742f34e7e0 345 Gene3D G3DSA:1.10.260.40 9 73 6.0E-20 T 12-10-2018 AMJ96_CH01161 b07078c80a1159f839777f742f34e7e0 345 Pfam PF00356 Bacterial regulatory proteins, lacI family 19 63 1.1E-13 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH01161 b07078c80a1159f839777f742f34e7e0 345 Gene3D G3DSA:3.40.50.2300 174 304 1.2E-58 T 12-10-2018 AMJ96_CH01161 b07078c80a1159f839777f742f34e7e0 345 ProSitePatterns PS00356 LacI-type HTH domain signature. 19 37 - T 12-10-2018 AMJ96_CH02976 bc9f706b9f5f2456ec2e7f1c1360ee58 135 Gene3D G3DSA:3.40.1490.10 1 135 1.4E-54 T 12-10-2018 IPR023476 Peptidyl-tRNA hydrolase II domain superfamily MetaCyc: PWY-6308 AMJ96_CH02976 bc9f706b9f5f2456ec2e7f1c1360ee58 135 SUPERFAMILY SSF102462 1 133 9.42E-47 T 12-10-2018 IPR023476 Peptidyl-tRNA hydrolase II domain superfamily MetaCyc: PWY-6308 AMJ96_CH02976 bc9f706b9f5f2456ec2e7f1c1360ee58 135 Pfam PF09391 Protein of unknown function (DUF2000) 4 133 5.6E-43 T 12-10-2018 IPR018988 Protein of unknown function DUF2000 AMJ96_CH02305 782fad4d075dbd67961221ae61fbfde2 346 SUPERFAMILY SSF51445 141 343 4.0E-69 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH02305 782fad4d075dbd67961221ae61fbfde2 346 Gene3D G3DSA:3.20.20.80 133 345 2.3E-70 T 12-10-2018 AMJ96_CH02305 782fad4d075dbd67961221ae61fbfde2 346 SMART SM00641 143 246 5.2E-19 T 12-10-2018 IPR018077 Glycoside hydrolase, family 25 subgroup AMJ96_CH02305 782fad4d075dbd67961221ae61fbfde2 346 Pfam PF01183 Glycosyl hydrolases family 25 146 323 1.9E-58 T 12-10-2018 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 AMJ96_CH02939 617e63ded1388a359725269bc4fb9e7e 138 Pfam PF07883 Cupin domain 50 123 7.9E-12 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_CH02939 617e63ded1388a359725269bc4fb9e7e 138 SUPERFAMILY SSF51182 28 130 7.09E-16 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH02939 617e63ded1388a359725269bc4fb9e7e 138 Gene3D G3DSA:2.60.120.10 25 133 6.7E-15 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH02895 6fba23e97e14c7b58209db832c29f7b8 366 Gene3D G3DSA:3.20.10.10 178 347 6.2E-137 T 12-10-2018 AMJ96_CH02895 6fba23e97e14c7b58209db832c29f7b8 366 Gene3D G3DSA:3.30.470.10 33 360 6.2E-137 T 12-10-2018 AMJ96_CH02895 6fba23e97e14c7b58209db832c29f7b8 366 Pfam PF01063 Amino-transferase class IV 78 318 1.3E-34 T 12-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 AMJ96_CH02895 6fba23e97e14c7b58209db832c29f7b8 366 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 52 361 3.3E-125 T 12-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 AMJ96_CH02895 6fba23e97e14c7b58209db832c29f7b8 366 ProSitePatterns PS00770 Aminotransferases class-IV signature. 240 270 - T 12-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 AMJ96_CH02895 6fba23e97e14c7b58209db832c29f7b8 366 PIRSF PIRSF006468 8 366 3.7E-131 T 12-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 AMJ96_CH02895 6fba23e97e14c7b58209db832c29f7b8 366 SUPERFAMILY SSF56752 19 361 4.97E-111 T 12-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 AMJ96_CH03780 25633caba87be53f00d32cf10dfee769 351 Pfam PF12146 Serine aminopeptidase, S33 86 278 5.3E-14 T 12-10-2018 IPR022742 Serine aminopeptidase, S33 AMJ96_CH03780 25633caba87be53f00d32cf10dfee769 351 Gene3D G3DSA:3.40.50.1820 18 313 4.0E-37 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH03780 25633caba87be53f00d32cf10dfee769 351 SUPERFAMILY SSF53474 25 301 5.74E-39 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH03780 25633caba87be53f00d32cf10dfee769 351 PRINTS PR00111 Alpha/beta hydrolase fold signature 256 270 1.6E-9 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH03780 25633caba87be53f00d32cf10dfee769 351 PRINTS PR00111 Alpha/beta hydrolase fold signature 143 156 1.6E-9 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH03780 25633caba87be53f00d32cf10dfee769 351 PRINTS PR00111 Alpha/beta hydrolase fold signature 84 99 1.6E-9 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH03780 25633caba87be53f00d32cf10dfee769 351 PRINTS PR00111 Alpha/beta hydrolase fold signature 129 142 1.6E-9 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PB00334 cf3114307ecbd115ed529503bdfd73dd 462 Pfam PF00067 Cytochrome P450 21 405 4.5E-42 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00334 cf3114307ecbd115ed529503bdfd73dd 462 SUPERFAMILY SSF48264 10 411 2.62E-67 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00334 cf3114307ecbd115ed529503bdfd73dd 462 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 385 394 - T 12-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 AMJ96_PB00334 cf3114307ecbd115ed529503bdfd73dd 462 Gene3D G3DSA:1.10.630.10 12 421 1.5E-69 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00334 cf3114307ecbd115ed529503bdfd73dd 462 PRINTS PR00463 E-class P450 group I signature 247 264 1.5E-5 T 12-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00334 cf3114307ecbd115ed529503bdfd73dd 462 PRINTS PR00463 E-class P450 group I signature 382 392 1.5E-5 T 12-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00334 cf3114307ecbd115ed529503bdfd73dd 462 PRINTS PR00463 E-class P450 group I signature 392 415 1.5E-5 T 12-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00334 cf3114307ecbd115ed529503bdfd73dd 462 PRINTS PR00463 E-class P450 group I signature 267 293 1.5E-5 T 12-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00334 cf3114307ecbd115ed529503bdfd73dd 462 PRINTS PR00385 P450 superfamily signature 258 275 1.5E-10 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00334 cf3114307ecbd115ed529503bdfd73dd 462 PRINTS PR00385 P450 superfamily signature 383 392 1.5E-10 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00334 cf3114307ecbd115ed529503bdfd73dd 462 PRINTS PR00385 P450 superfamily signature 309 320 1.5E-10 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00334 cf3114307ecbd115ed529503bdfd73dd 462 PRINTS PR00385 P450 superfamily signature 392 403 1.5E-10 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH04171 831e963a2634f501dddf0899d44c1764 407 SUPERFAMILY SSF52402 8 171 4.19E-51 T 12-10-2018 AMJ96_CH04171 831e963a2634f501dddf0899d44c1764 407 Pfam PF00764 Arginosuccinate synthase 11 399 1.0E-153 T 12-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMJ96_CH04171 831e963a2634f501dddf0899d44c1764 407 TIGRFAM TIGR00032 argG: argininosuccinate synthase 9 400 6.1E-142 T 12-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMJ96_CH04171 831e963a2634f501dddf0899d44c1764 407 Gene3D G3DSA:1.20.5.470 380 403 2.4E-10 T 12-10-2018 AMJ96_CH04171 831e963a2634f501dddf0899d44c1764 407 SUPERFAMILY SSF69864 178 404 3.53E-88 T 12-10-2018 AMJ96_CH04171 831e963a2634f501dddf0899d44c1764 407 Gene3D G3DSA:3.40.50.620 10 176 3.3E-154 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH04171 831e963a2634f501dddf0899d44c1764 407 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 13 21 - T 12-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMJ96_CH04171 831e963a2634f501dddf0899d44c1764 407 Hamap MF_00005 Argininosuccinate synthase [argG]. 7 405 52.163 T 12-10-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMJ96_CH04171 831e963a2634f501dddf0899d44c1764 407 Gene3D G3DSA:3.90.1260.10 68 360 3.3E-154 T 12-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMJ96_CH04171 831e963a2634f501dddf0899d44c1764 407 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 121 132 - T 12-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMJ96_PD00134 fd5363571e737ada97e595ee91cd569b 257 SUPERFAMILY SSF46785 3 72 1.59E-11 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00134 fd5363571e737ada97e595ee91cd569b 257 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 7.2E-15 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMJ96_PD00134 fd5363571e737ada97e595ee91cd569b 257 SMART SM01134 72 233 3.6E-69 T 12-10-2018 AMJ96_PD00134 fd5363571e737ada97e595ee91cd569b 257 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 8.5E-9 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMJ96_PD00134 fd5363571e737ada97e595ee91cd569b 257 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 8.5E-9 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMJ96_PD00134 fd5363571e737ada97e595ee91cd569b 257 Pfam PF00455 DeoR C terminal sensor domain 75 232 4.6E-52 T 12-10-2018 IPR014036 DeoR C-terminal sensor domain AMJ96_PD00134 fd5363571e737ada97e595ee91cd569b 257 SMART SM00420 6 58 1.1E-12 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMJ96_PD00134 fd5363571e737ada97e595ee91cd569b 257 SUPERFAMILY SSF100950 75 233 7.33E-29 T 12-10-2018 IPR037171 NagB/RpiA transferase-like AMJ96_PD00134 fd5363571e737ada97e595ee91cd569b 257 Gene3D G3DSA:1.10.10.10 1 56 1.3E-5 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00918 bf461fec8f8560d7d53684749acd56e9 1097 SUPERFAMILY SSF158837 116 227 2.35E-25 T 12-10-2018 IPR023157 AGR-C-984p-like superfamily AMJ96_CH00918 bf461fec8f8560d7d53684749acd56e9 1097 SUPERFAMILY SSF158837 245 340 1.57E-15 T 12-10-2018 IPR023157 AGR-C-984p-like superfamily AMJ96_CH00918 bf461fec8f8560d7d53684749acd56e9 1097 SUPERFAMILY SSF158837 751 854 3.53E-21 T 12-10-2018 IPR023157 AGR-C-984p-like superfamily AMJ96_CH00918 bf461fec8f8560d7d53684749acd56e9 1097 SUPERFAMILY SSF158837 525 621 3.27E-15 T 12-10-2018 IPR023157 AGR-C-984p-like superfamily AMJ96_CH00918 bf461fec8f8560d7d53684749acd56e9 1097 SUPERFAMILY SSF158837 873 1078 1.28E-60 T 12-10-2018 IPR023157 AGR-C-984p-like superfamily AMJ96_CH00918 bf461fec8f8560d7d53684749acd56e9 1097 SUPERFAMILY SSF158837 626 749 1.44E-12 T 12-10-2018 IPR023157 AGR-C-984p-like superfamily AMJ96_CH00918 bf461fec8f8560d7d53684749acd56e9 1097 Pfam PF06748 Protein of unknown function (DUF1217) 159 291 1.8E-15 T 12-10-2018 IPR010626 Protein of unknown function DUF1217 AMJ96_CH00918 bf461fec8f8560d7d53684749acd56e9 1097 Pfam PF06748 Protein of unknown function (DUF1217) 512 578 7.9E-7 T 12-10-2018 IPR010626 Protein of unknown function DUF1217 AMJ96_CH00918 bf461fec8f8560d7d53684749acd56e9 1097 Pfam PF06748 Protein of unknown function (DUF1217) 909 1063 7.5E-47 T 12-10-2018 IPR010626 Protein of unknown function DUF1217 AMJ96_CH00918 bf461fec8f8560d7d53684749acd56e9 1097 Pfam PF06748 Protein of unknown function (DUF1217) 47 159 3.7E-21 T 12-10-2018 IPR010626 Protein of unknown function DUF1217 AMJ96_CH00918 bf461fec8f8560d7d53684749acd56e9 1097 Pfam PF06748 Protein of unknown function (DUF1217) 785 906 1.0E-12 T 12-10-2018 IPR010626 Protein of unknown function DUF1217 AMJ96_CH00918 bf461fec8f8560d7d53684749acd56e9 1097 SUPERFAMILY SSF158837 357 519 3.79E-24 T 12-10-2018 IPR023157 AGR-C-984p-like superfamily AMJ96_CH00918 bf461fec8f8560d7d53684749acd56e9 1097 Gene3D G3DSA:1.10.3700.10 515 624 1.2E-11 T 12-10-2018 IPR023157 AGR-C-984p-like superfamily AMJ96_CH00918 bf461fec8f8560d7d53684749acd56e9 1097 Gene3D G3DSA:1.10.3700.10 749 858 6.6E-22 T 12-10-2018 IPR023157 AGR-C-984p-like superfamily AMJ96_CH00918 bf461fec8f8560d7d53684749acd56e9 1097 Gene3D G3DSA:1.10.3700.10 117 232 1.4E-32 T 12-10-2018 IPR023157 AGR-C-984p-like superfamily AMJ96_CH00918 bf461fec8f8560d7d53684749acd56e9 1097 Gene3D G3DSA:1.10.3700.10 233 340 9.6E-12 T 12-10-2018 IPR023157 AGR-C-984p-like superfamily AMJ96_CH00918 bf461fec8f8560d7d53684749acd56e9 1097 Gene3D G3DSA:1.10.3700.10 864 1079 1.8E-76 T 12-10-2018 IPR023157 AGR-C-984p-like superfamily AMJ96_CH00918 bf461fec8f8560d7d53684749acd56e9 1097 Gene3D G3DSA:1.10.3700.10 1 116 1.3E-40 T 12-10-2018 IPR023157 AGR-C-984p-like superfamily AMJ96_CH00918 bf461fec8f8560d7d53684749acd56e9 1097 SUPERFAMILY SSF158837 1 114 3.14E-40 T 12-10-2018 IPR023157 AGR-C-984p-like superfamily AMJ96_CH03679 52cca14db01f421fa1ce8a9a24f08b7c 296 SUPERFAMILY SSF51182 37 149 3.2E-9 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH03679 52cca14db01f421fa1ce8a9a24f08b7c 296 SMART SM00342 203 286 1.9E-19 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH03679 52cca14db01f421fa1ce8a9a24f08b7c 296 Gene3D G3DSA:1.10.10.60 185 295 1.1E-22 T 12-10-2018 AMJ96_CH03679 52cca14db01f421fa1ce8a9a24f08b7c 296 Pfam PF02311 AraC-like ligand binding domain 30 89 1.7E-5 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMJ96_CH03679 52cca14db01f421fa1ce8a9a24f08b7c 296 SUPERFAMILY SSF46689 241 288 4.35E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03679 52cca14db01f421fa1ce8a9a24f08b7c 296 Pfam PF12833 Helix-turn-helix domain 209 286 3.3E-19 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH03679 52cca14db01f421fa1ce8a9a24f08b7c 296 Gene3D G3DSA:2.60.120.10 23 156 3.9E-7 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH00998 2bd0eab1e07f54c4b42e41e91d0f0e1b 204 Pfam PF13302 Acetyltransferase (GNAT) domain 24 167 4.8E-19 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH00998 2bd0eab1e07f54c4b42e41e91d0f0e1b 204 Gene3D G3DSA:3.40.630.30 15 195 1.2E-48 T 12-10-2018 AMJ96_CH00998 2bd0eab1e07f54c4b42e41e91d0f0e1b 204 SUPERFAMILY SSF55729 15 191 1.18E-44 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_PC00413 bf054cf135fe2e0afed91876f486b699 248 SMART SM00345 22 81 2.1E-19 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00413 bf054cf135fe2e0afed91876f486b699 248 Gene3D G3DSA:1.20.120.530 106 239 5.4E-26 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PC00413 bf054cf135fe2e0afed91876f486b699 248 SMART SM00895 105 233 1.6E-20 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PC00413 bf054cf135fe2e0afed91876f486b699 248 Gene3D G3DSA:1.10.10.10 21 89 2.0E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00413 bf054cf135fe2e0afed91876f486b699 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 1.0E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00413 bf054cf135fe2e0afed91876f486b699 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 1.0E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00413 bf054cf135fe2e0afed91876f486b699 248 SUPERFAMILY SSF48008 101 240 5.23E-24 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PC00413 bf054cf135fe2e0afed91876f486b699 248 SUPERFAMILY SSF46785 14 85 1.14E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00413 bf054cf135fe2e0afed91876f486b699 248 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 81 1.7E-19 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00413 bf054cf135fe2e0afed91876f486b699 248 Pfam PF07729 FCD domain 106 232 4.1E-22 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH00341 de21adc282367d937d0782f941d07365 205 Pfam PF01810 LysE type translocator 15 202 3.4E-27 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMJ96_CH00088 648a3b515236a5b93414230c33c03f43 358 Pfam PF08402 TOBE domain 281 351 6.8E-9 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_CH00088 648a3b515236a5b93414230c33c03f43 358 SMART SM00382 29 212 2.6E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00088 648a3b515236a5b93414230c33c03f43 358 Pfam PF00005 ABC transporter 21 162 5.1E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00088 648a3b515236a5b93414230c33c03f43 358 Gene3D G3DSA:3.40.50.300 5 222 2.7E-63 T 12-10-2018 AMJ96_CH00088 648a3b515236a5b93414230c33c03f43 358 Gene3D G3DSA:2.40.50.940 223 352 4.7E-34 T 12-10-2018 AMJ96_CH00088 648a3b515236a5b93414230c33c03f43 358 SUPERFAMILY SSF50331 237 356 3.83E-27 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH00088 648a3b515236a5b93414230c33c03f43 358 Gene3D G3DSA:2.40.50.140 287 343 4.7E-34 T 12-10-2018 AMJ96_CH00088 648a3b515236a5b93414230c33c03f43 358 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00088 648a3b515236a5b93414230c33c03f43 358 SUPERFAMILY SSF52540 5 244 1.11E-84 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03764 2a0966c26253ad4a761c1820ca60b03f 567 Pfam PF12729 Four helix bundle sensory module for signal transduction 3 181 3.2E-12 T 12-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain AMJ96_CH03764 2a0966c26253ad4a761c1820ca60b03f 567 SUPERFAMILY SSF58104 228 495 1.57E-62 T 12-10-2018 AMJ96_CH03764 2a0966c26253ad4a761c1820ca60b03f 567 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 320 480 1.3E-29 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH03764 2a0966c26253ad4a761c1820ca60b03f 567 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 185 205 4.7E-22 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH03764 2a0966c26253ad4a761c1820ca60b03f 567 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 352 379 4.7E-22 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH03764 2a0966c26253ad4a761c1820ca60b03f 567 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 381 410 4.7E-22 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH03764 2a0966c26253ad4a761c1820ca60b03f 567 Pfam PF00672 HAMP domain 209 256 6.3E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH03764 2a0966c26253ad4a761c1820ca60b03f 567 Gene3D G3DSA:1.10.287.950 207 496 6.6E-71 T 12-10-2018 AMJ96_CH03764 2a0966c26253ad4a761c1820ca60b03f 567 SMART SM00304 208 260 1.1E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH03764 2a0966c26253ad4a761c1820ca60b03f 567 SMART SM00283 261 494 3.5E-63 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH01387 a29f5bb39f843985af6abd26b0c08e84 644 Pfam PF00294 pfkB family carbohydrate kinase 15 329 3.1E-45 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB AMJ96_CH01387 a29f5bb39f843985af6abd26b0c08e84 644 TIGRFAM TIGR04382 myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase 14 338 2.8E-115 T 12-10-2018 IPR030830 5-Dehydro-2-deoxygluconokinase KEGG: 00562+2.7.1.92 AMJ96_CH01387 a29f5bb39f843985af6abd26b0c08e84 644 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 46 70 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMJ96_CH01387 a29f5bb39f843985af6abd26b0c08e84 644 Gene3D G3DSA:2.20.150.10 22 117 2.8E-91 T 12-10-2018 IPR023314 5-Dehydro-2-deoxygluconokinase-like superfamily KEGG: 00562+2.7.1.92 AMJ96_CH01387 a29f5bb39f843985af6abd26b0c08e84 644 SUPERFAMILY SSF53613 14 338 1.47E-67 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_CH01387 a29f5bb39f843985af6abd26b0c08e84 644 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 282 295 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMJ96_CH01387 a29f5bb39f843985af6abd26b0c08e84 644 Pfam PF09863 Uncharacterized protein conserved in bacteria (DUF2090) 333 640 1.3E-131 T 12-10-2018 IPR018659 Protein of unknown function DUF2090 AMJ96_CH01387 a29f5bb39f843985af6abd26b0c08e84 644 Gene3D G3DSA:3.40.1190.20 17 320 2.8E-91 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_CH01387 a29f5bb39f843985af6abd26b0c08e84 644 Gene3D G3DSA:3.20.20.70 361 642 6.9E-51 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH00415 76c7231d786d3a8b75d3ed394935b522 151 SUPERFAMILY SSF55961 1 144 4.66E-39 T 12-10-2018 AMJ96_CH00415 76c7231d786d3a8b75d3ed394935b522 151 Pfam PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) 5 144 8.6E-40 T 12-10-2018 IPR010419 Carbon monoxide dehydrogenase subunit G AMJ96_CH00415 76c7231d786d3a8b75d3ed394935b522 151 Gene3D G3DSA:3.30.530.20 1 150 2.5E-43 T 12-10-2018 IPR023393 START-like domain superfamily AMJ96_CH01561 2d3103acbccded4f569e24795939e3cf 712 Pfam PF03030 Inorganic H+ pyrophosphatase 13 705 1.2E-250 T 12-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_CH01561 2d3103acbccded4f569e24795939e3cf 712 Hamap MF_01129 Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 1 711 24.823 T 12-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_CH01561 2d3103acbccded4f569e24795939e3cf 712 PIRSF PIRSF001265 1 712 1.4E-236 T 12-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_CH01561 2d3103acbccded4f569e24795939e3cf 712 TIGRFAM TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase 5 711 4.1E-261 T 12-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_CH01157 8209965ff0682f8afd7d36e523911143 378 TIGRFAM TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase 5 374 3.2E-194 T 12-10-2018 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like MetaCyc: PWY-7315 AMJ96_CH01157 8209965ff0682f8afd7d36e523911143 378 PIRSF PIRSF000390 1 378 1.6E-102 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMJ96_CH01157 8209965ff0682f8afd7d36e523911143 378 Gene3D G3DSA:3.40.640.10 1 250 6.2E-73 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH01157 8209965ff0682f8afd7d36e523911143 378 SUPERFAMILY SSF53383 4 377 1.92E-94 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH01157 8209965ff0682f8afd7d36e523911143 378 Gene3D G3DSA:3.90.1150.10 252 376 3.3E-28 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH01157 8209965ff0682f8afd7d36e523911143 378 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 29 373 1.5E-86 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMJ96_CH03005 d7187e6d716d95290db1ee4fcffbb0dd 289 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 19 256 4.2E-83 T 12-10-2018 IPR017689 Outer membrane protein assembly factor BamD AMJ96_CH03005 d7187e6d716d95290db1ee4fcffbb0dd 289 Pfam PF13525 Outer membrane lipoprotein 48 243 7.0E-50 T 12-10-2018 IPR039565 Outer membrane lipoprotein BamD-like AMJ96_CH03005 d7187e6d716d95290db1ee4fcffbb0dd 289 Gene3D G3DSA:1.25.40.10 48 261 9.3E-54 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03005 d7187e6d716d95290db1ee4fcffbb0dd 289 SUPERFAMILY SSF48452 45 135 9.05E-8 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03005 d7187e6d716d95290db1ee4fcffbb0dd 289 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 10 250 34.287 T 12-10-2018 IPR017689 Outer membrane protein assembly factor BamD AMJ96_PC00447 4ae1a3b4d5840f6da0123a83e4623ac4 651 SUPERFAMILY SSF48452 134 237 1.03E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_PC00447 4ae1a3b4d5840f6da0123a83e4623ac4 651 Pfam PF03704 Bacterial transcriptional activator domain 125 237 6.6E-16 T 12-10-2018 IPR005158 Bacterial transcriptional activator domain AMJ96_PC00447 4ae1a3b4d5840f6da0123a83e4623ac4 651 SMART SM01043 105 238 8.3E-21 T 12-10-2018 IPR005158 Bacterial transcriptional activator domain AMJ96_PC00447 4ae1a3b4d5840f6da0123a83e4623ac4 651 Gene3D G3DSA:1.25.40.10 393 628 3.7E-24 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_PC00447 4ae1a3b4d5840f6da0123a83e4623ac4 651 SUPERFAMILY SSF48452 174 622 6.45E-18 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_PC00447 4ae1a3b4d5840f6da0123a83e4623ac4 651 Gene3D G3DSA:1.25.40.10 114 256 6.0E-18 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_PC00447 4ae1a3b4d5840f6da0123a83e4623ac4 651 SMART SM00028 523 556 220.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_PC00447 4ae1a3b4d5840f6da0123a83e4623ac4 651 SMART SM00028 489 522 1.1E-4 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_PC00447 4ae1a3b4d5840f6da0123a83e4623ac4 651 Gene3D G3DSA:1.10.10.10 3 96 6.1E-6 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00447 4ae1a3b4d5840f6da0123a83e4623ac4 651 Pfam PF14559 Tetratricopeptide repeat 500 559 7.0E-7 T 12-10-2018 AMJ96_PD00658 9363902812572225620b4a75923f3cfd 89 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 8 53 3.9E-10 T 12-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM AMJ96_PD00658 9363902812572225620b4a75923f3cfd 89 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 8 54 2.0E-9 T 12-10-2018 AMJ96_PD00658 9363902812572225620b4a75923f3cfd 89 SUPERFAMILY SSF143120 8 53 1.83E-10 T 12-10-2018 IPR036165 YefM-like superfamily AMJ96_CH01356 d6b6c21e4f0f35778b1587f3e941dff8 444 SUPERFAMILY SSF54368 12 105 6.93E-7 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH01356 d6b6c21e4f0f35778b1587f3e941dff8 444 SUPERFAMILY SSF55931 108 441 2.65E-84 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMJ96_CH01356 d6b6c21e4f0f35778b1587f3e941dff8 444 Gene3D G3DSA:3.30.590.10 109 443 1.0E-85 T 12-10-2018 AMJ96_CH01356 d6b6c21e4f0f35778b1587f3e941dff8 444 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 244 259 - T 12-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMJ96_CH01356 d6b6c21e4f0f35778b1587f3e941dff8 444 Pfam PF00120 Glutamine synthetase, catalytic domain 107 440 6.5E-81 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH01356 d6b6c21e4f0f35778b1587f3e941dff8 444 SMART SM01230 106 362 1.1E-83 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH01730 b8e5eaf4e2eb317d20502d948801b46e 177 SUPERFAMILY SSF56053 83 177 2.16E-36 T 12-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01730 b8e5eaf4e2eb317d20502d948801b46e 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 12-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01730 b8e5eaf4e2eb317d20502d948801b46e 177 SUPERFAMILY SSF56053 1 82 2.75E-21 T 12-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01730 b8e5eaf4e2eb317d20502d948801b46e 177 PIRSF PIRSF002162 1 177 4.1E-46 T 12-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01730 b8e5eaf4e2eb317d20502d948801b46e 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 1.0E-70 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMJ96_CH01730 b8e5eaf4e2eb317d20502d948801b46e 177 Gene3D G3DSA:3.90.930.12 83 177 1.5E-39 T 12-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01730 b8e5eaf4e2eb317d20502d948801b46e 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 36.813 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMJ96_CH01730 b8e5eaf4e2eb317d20502d948801b46e 177 Pfam PF00347 Ribosomal protein L6 91 164 1.2E-19 T 12-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01730 b8e5eaf4e2eb317d20502d948801b46e 177 Pfam PF00347 Ribosomal protein L6 11 82 2.2E-13 T 12-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01730 b8e5eaf4e2eb317d20502d948801b46e 177 Gene3D G3DSA:3.90.930.12 1 82 2.7E-24 T 12-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01730 b8e5eaf4e2eb317d20502d948801b46e 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 1.2E-28 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMJ96_CH01730 b8e5eaf4e2eb317d20502d948801b46e 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 1.2E-28 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMJ96_CH01730 b8e5eaf4e2eb317d20502d948801b46e 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 1.2E-28 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMJ96_PD00614 0321cc1054ab4aaab97fff3aac564ffe 317 Gene3D G3DSA:1.10.3720.10 93 297 7.6E-19 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00614 0321cc1054ab4aaab97fff3aac564ffe 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 298 1.7E-27 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00614 0321cc1054ab4aaab97fff3aac564ffe 317 SUPERFAMILY SSF161098 97 283 2.49E-25 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00085 f590df37a91d45ddb22d34b2f523f393 319 SUPERFAMILY SSF161098 79 305 1.09E-52 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00085 f590df37a91d45ddb22d34b2f523f393 319 Gene3D G3DSA:1.10.3720.10 73 314 2.0E-61 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00085 f590df37a91d45ddb22d34b2f523f393 319 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 307 5.2E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02925 c15527e30799420e68bc114587acdbc7 175 Pfam PF07886 BA14K-like protein 143 171 7.5E-15 T 12-10-2018 IPR012413 BA14k family GO:0009405 AMJ96_CH01313 46765a19d4a3436ca580200ab9388e2c 301 PRINTS PR00834 HtrA/DegQ protease family signature 236 248 8.8E-8 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01313 46765a19d4a3436ca580200ab9388e2c 301 PRINTS PR00834 HtrA/DegQ protease family signature 157 174 8.8E-8 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01313 46765a19d4a3436ca580200ab9388e2c 301 PRINTS PR00834 HtrA/DegQ protease family signature 42 54 8.8E-8 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01313 46765a19d4a3436ca580200ab9388e2c 301 PRINTS PR00834 HtrA/DegQ protease family signature 63 83 8.8E-8 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01313 46765a19d4a3436ca580200ab9388e2c 301 SUPERFAMILY SSF50156 201 288 2.37E-15 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 AMJ96_CH01313 46765a19d4a3436ca580200ab9388e2c 301 Pfam PF13365 Trypsin-like peptidase domain 33 164 1.0E-11 T 12-10-2018 AMJ96_CH01313 46765a19d4a3436ca580200ab9388e2c 301 SMART SM00228 208 279 1.3E-7 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH01313 46765a19d4a3436ca580200ab9388e2c 301 SUPERFAMILY SSF50494 4 201 1.35E-28 T 12-10-2018 IPR009003 Peptidase S1, PA clan AMJ96_CH01313 46765a19d4a3436ca580200ab9388e2c 301 Pfam PF13180 PDZ domain 214 286 2.0E-14 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH01313 46765a19d4a3436ca580200ab9388e2c 301 Gene3D G3DSA:2.40.10.120 2 202 1.0E-19 T 12-10-2018 AMJ96_CH01313 46765a19d4a3436ca580200ab9388e2c 301 Gene3D G3DSA:2.30.42.10 206 297 1.5E-16 T 12-10-2018 AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 SUPERFAMILY SSF56091 12 328 1.51E-113 T 12-10-2018 AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 343 358 - T 12-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 Pfam PF12826 Helix-hairpin-helix motif 550 623 1.1E-16 T 12-10-2018 AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 Gene3D G3DSA:1.10.150.20 546 630 2.8E-23 T 12-10-2018 AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 SMART SM00532 15 478 9.2E-229 T 12-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 Gene3D G3DSA:2.40.50.140 330 414 1.3E-32 T 12-10-2018 AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 Gene3D G3DSA:1.10.287.610 11 82 1.7E-24 T 12-10-2018 AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 Gene3D G3DSA:3.40.50.10190 631 717 6.1E-28 T 12-10-2018 IPR036420 BRCT domain superfamily AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 129 158 - T 12-10-2018 IPR018239 NAD-dependent DNA ligase, active site AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 23 712 2.6E-223 T 12-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 Hamap MF_01588 DNA ligase [ligA]. 14 716 49.309 T 12-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 SMART SM00278 552 571 320.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 SMART SM00278 594 613 8.8 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 SMART SM00278 520 539 300.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 431 464 2.9E-8 T 12-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 SUPERFAMILY SSF47781 428 628 4.45E-44 T 12-10-2018 IPR010994 RuvA domain 2-like AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 Gene3D G3DSA:2.20.70.80 415 461 7.6E-12 T 12-10-2018 AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 643 716 1.7E-11 T 12-10-2018 IPR001357 BRCT domain AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 PIRSF PIRSF001604 8 718 4.4E-218 T 12-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 Gene3D G3DSA:1.10.150.20 462 545 5.9E-18 T 12-10-2018 AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 SUPERFAMILY SSF50249 329 422 5.48E-24 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 15 330 6.4E-119 T 12-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 Gene3D G3DSA:3.30.470.90 83 329 1.3E-96 T 12-10-2018 AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 334 419 1.6E-32 T 12-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 SUPERFAMILY SSF52113 642 716 1.21E-17 T 12-10-2018 IPR036420 BRCT domain superfamily AMJ96_CH03002 22a4d2c32dc38f4d9fa301d900d4e402 718 SMART SM00292 642 718 2.5E-10 T 12-10-2018 IPR001357 BRCT domain AMJ96_CH04133 ca3c8007787724923332a85d981786b5 250 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 194 3.5E-4 T 12-10-2018 AMJ96_CH04133 ca3c8007787724923332a85d981786b5 250 SUPERFAMILY SSF51735 6 249 3.21E-74 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH04133 ca3c8007787724923332a85d981786b5 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 3.4E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04133 ca3c8007787724923332a85d981786b5 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 3.4E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04133 ca3c8007787724923332a85d981786b5 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 3.4E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04133 ca3c8007787724923332a85d981786b5 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 249 3.5E-58 T 12-10-2018 AMJ96_CH04133 ca3c8007787724923332a85d981786b5 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 1.3E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04133 ca3c8007787724923332a85d981786b5 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.3E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04133 ca3c8007787724923332a85d981786b5 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.3E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04133 ca3c8007787724923332a85d981786b5 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.3E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04133 ca3c8007787724923332a85d981786b5 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 1.3E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04133 ca3c8007787724923332a85d981786b5 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.3E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04133 ca3c8007787724923332a85d981786b5 250 Gene3D G3DSA:3.40.50.720 4 250 1.1E-82 T 12-10-2018 AMJ96_CH02003 0c7f82a196b816a91e5d5fae18353946 465 Pfam PF02779 Transketolase, pyrimidine binding domain 142 317 5.1E-50 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMJ96_CH02003 0c7f82a196b816a91e5d5fae18353946 465 Pfam PF00364 Biotin-requiring enzyme 4 77 5.2E-19 T 12-10-2018 IPR000089 Biotin/lipoyl attachment AMJ96_CH02003 0c7f82a196b816a91e5d5fae18353946 465 SMART SM00861 143 318 2.9E-62 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMJ96_CH02003 0c7f82a196b816a91e5d5fae18353946 465 Gene3D G3DSA:2.40.50.100 3 101 4.3E-31 T 12-10-2018 AMJ96_CH02003 0c7f82a196b816a91e5d5fae18353946 465 Pfam PF02780 Transketolase, C-terminal domain 333 452 3.1E-39 T 12-10-2018 IPR033248 Transketolase, C-terminal domain AMJ96_CH02003 0c7f82a196b816a91e5d5fae18353946 465 SUPERFAMILY SSF51230 1 97 4.84E-28 T 12-10-2018 IPR011053 Single hybrid motif AMJ96_CH02003 0c7f82a196b816a91e5d5fae18353946 465 Gene3D G3DSA:3.40.50.920 330 464 1.7E-46 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMJ96_CH02003 0c7f82a196b816a91e5d5fae18353946 465 Gene3D G3DSA:3.40.50.970 142 329 1.1E-83 T 12-10-2018 AMJ96_CH02003 0c7f82a196b816a91e5d5fae18353946 465 SUPERFAMILY SSF52518 143 332 9.68E-68 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_CH02003 0c7f82a196b816a91e5d5fae18353946 465 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMJ96_CH02003 0c7f82a196b816a91e5d5fae18353946 465 SUPERFAMILY SSF52922 329 463 2.22E-41 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMJ96_CH02092 e771c2ad17a42ac0cd4bdecb13eddf4e 193 SUPERFAMILY SSF52218 1 193 6.37E-42 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_CH02092 e771c2ad17a42ac0cd4bdecb13eddf4e 193 Pfam PF02525 Flavodoxin-like fold 1 138 1.1E-30 T 12-10-2018 IPR003680 Flavodoxin-like fold AMJ96_CH02092 e771c2ad17a42ac0cd4bdecb13eddf4e 193 Gene3D G3DSA:3.40.50.360 1 193 9.0E-41 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_PB00314 8875ff02b29dcd5e1fad7304fa244c84 367 Pfam PF00155 Aminotransferase class I and II 33 352 9.3E-46 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_PB00314 8875ff02b29dcd5e1fad7304fa244c84 367 SUPERFAMILY SSF53383 32 357 1.26E-75 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_PB00314 8875ff02b29dcd5e1fad7304fa244c84 367 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 217 226 - T 12-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 AMJ96_PB00314 8875ff02b29dcd5e1fad7304fa244c84 367 Gene3D G3DSA:3.40.640.10 46 266 5.9E-96 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_PB00314 8875ff02b29dcd5e1fad7304fa244c84 367 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 20 357 6.5E-86 T 12-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 AMJ96_PB00314 8875ff02b29dcd5e1fad7304fa244c84 367 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 16 359 48.803 T 12-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 AMJ96_PB00314 8875ff02b29dcd5e1fad7304fa244c84 367 Gene3D G3DSA:3.90.1150.10 29 349 5.9E-96 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_PB00003 6a3532f71143463c8ef2fd7437d53c47 85 Pfam PF13683 Integrase core domain 1 34 2.3E-7 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMJ96_CH00376 55d9e7422514550d23e430872caf0661 138 Gene3D G3DSA:3.10.180.10 6 138 2.8E-38 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH00376 55d9e7422514550d23e430872caf0661 138 SUPERFAMILY SSF54593 3 128 6.18E-29 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH00376 55d9e7422514550d23e430872caf0661 138 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 125 3.8E-13 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH04238 eb4ffb4842eba944ec22281a715a14a8 352 SUPERFAMILY SSF51556 3 348 1.93E-87 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_CH04238 eb4ffb4842eba944ec22281a715a14a8 352 Gene3D G3DSA:3.20.20.140 1 352 7.7E-109 T 12-10-2018 AMJ96_CH04238 eb4ffb4842eba944ec22281a715a14a8 352 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 3 344 1.0E-98 T 12-10-2018 IPR008257 Peptidase M19 GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 AMJ96_PC00030 2841687490b738ee8c125e0dc695cf81 206 Gene3D G3DSA:1.20.120.80 20 205 1.5E-54 T 12-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00030 2841687490b738ee8c125e0dc695cf81 206 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 27 205 6.4E-81 T 12-10-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 AMJ96_PC00030 2841687490b738ee8c125e0dc695cf81 206 Pfam PF00510 Cytochrome c oxidase subunit III 26 203 4.4E-13 T 12-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00030 2841687490b738ee8c125e0dc695cf81 206 SUPERFAMILY SSF81452 11 203 6.28E-56 T 12-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH04239 3ad76ba3a5c5610e3ea566c92de23495 547 PIRSF PIRSF002741 2 541 5.8E-83 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_CH04239 3ad76ba3a5c5610e3ea566c92de23495 547 Gene3D G3DSA:3.40.190.10 225 534 3.6E-115 T 12-10-2018 AMJ96_CH04239 3ad76ba3a5c5610e3ea566c92de23495 547 SUPERFAMILY SSF53850 34 540 4.35E-115 T 12-10-2018 AMJ96_CH04239 3ad76ba3a5c5610e3ea566c92de23495 547 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 81 458 1.7E-87 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_CH04239 3ad76ba3a5c5610e3ea566c92de23495 547 Gene3D G3DSA:3.90.76.10 49 224 3.6E-115 T 12-10-2018 AMJ96_CH04239 3ad76ba3a5c5610e3ea566c92de23495 547 ProSitePatterns PS00284 Serpins signature. 505 515 - T 12-10-2018 IPR023795 Serpin, conserved site AMJ96_CH04239 3ad76ba3a5c5610e3ea566c92de23495 547 Gene3D G3DSA:3.10.105.10 304 522 3.6E-115 T 12-10-2018 AMJ96_CH03035 51010adbfefb00d6ea269276cdad283f 414 Pfam PF11899 Protein of unknown function (DUF3419) 37 412 9.7E-115 T 12-10-2018 IPR021829 Protein of unknown function DUF3419 AMJ96_CH03035 51010adbfefb00d6ea269276cdad283f 414 SUPERFAMILY SSF53335 56 366 1.92E-8 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_PA00102 a967f29249a890701b3e2e6931096573 505 Gene3D G3DSA:3.10.105.10 267 479 2.5E-90 T 12-10-2018 AMJ96_PA00102 a967f29249a890701b3e2e6931096573 505 SUPERFAMILY SSF53850 28 488 3.8E-93 T 12-10-2018 AMJ96_PA00102 a967f29249a890701b3e2e6931096573 505 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 75 405 1.3E-61 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_PA00102 a967f29249a890701b3e2e6931096573 505 Gene3D G3DSA:3.90.76.10 64 176 2.5E-90 T 12-10-2018 AMJ96_PA00102 a967f29249a890701b3e2e6931096573 505 PIRSF PIRSF002741 8 505 4.7E-68 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_PA00102 a967f29249a890701b3e2e6931096573 505 Gene3D G3DSA:3.40.190.10 37 266 2.5E-90 T 12-10-2018 AMJ96_PB00261 f80f026718f2ffd8234128d44f2cd7d5 336 Gene3D G3DSA:3.40.190.10 204 302 4.3E-49 T 12-10-2018 AMJ96_PB00261 f80f026718f2ffd8234128d44f2cd7d5 336 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 43 102 2.0E-13 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PB00261 f80f026718f2ffd8234128d44f2cd7d5 336 Gene3D G3DSA:3.40.190.10 133 326 4.3E-49 T 12-10-2018 AMJ96_PB00261 f80f026718f2ffd8234128d44f2cd7d5 336 SUPERFAMILY SSF46785 39 119 3.13E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PB00261 f80f026718f2ffd8234128d44f2cd7d5 336 Pfam PF03466 LysR substrate binding domain 134 330 1.1E-16 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PB00261 f80f026718f2ffd8234128d44f2cd7d5 336 Gene3D G3DSA:1.10.10.10 34 123 2.9E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PB00261 f80f026718f2ffd8234128d44f2cd7d5 336 SUPERFAMILY SSF53850 133 327 7.39E-32 T 12-10-2018 AMJ96_PA00215 b801ac8e8608d4bfc7356ec08a935987 154 Gene3D G3DSA:1.10.10.10 5 56 4.6E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PA00215 b801ac8e8608d4bfc7356ec08a935987 154 Pfam PF01037 Lrp/AsnC ligand binding domain 71 143 4.9E-15 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMJ96_PA00215 b801ac8e8608d4bfc7356ec08a935987 154 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 51 3.8E-15 T 12-10-2018 AMJ96_PA00215 b801ac8e8608d4bfc7356ec08a935987 154 SMART SM00344 4 113 1.2E-24 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMJ96_PA00215 b801ac8e8608d4bfc7356ec08a935987 154 SUPERFAMILY SSF54909 71 151 1.39E-12 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_PA00215 b801ac8e8608d4bfc7356ec08a935987 154 SUPERFAMILY SSF46785 3 63 7.68E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PA00215 b801ac8e8608d4bfc7356ec08a935987 154 Gene3D G3DSA:3.30.70.920 57 149 1.0E-14 T 12-10-2018 AMJ96_PA00215 b801ac8e8608d4bfc7356ec08a935987 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 1.8E-12 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_PA00215 b801ac8e8608d4bfc7356ec08a935987 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 1.8E-12 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_PA00215 b801ac8e8608d4bfc7356ec08a935987 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 1.8E-12 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH03648 5faf6418b62c8a2e7656f5c5366c7590 478 Pfam PF02321 Outer membrane efflux protein 279 456 1.1E-33 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMJ96_CH03648 5faf6418b62c8a2e7656f5c5366c7590 478 Pfam PF02321 Outer membrane efflux protein 63 247 5.2E-27 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMJ96_CH03648 5faf6418b62c8a2e7656f5c5366c7590 478 Gene3D G3DSA:1.20.1600.10 50 459 9.1E-116 T 12-10-2018 AMJ96_CH03648 5faf6418b62c8a2e7656f5c5366c7590 478 SUPERFAMILY SSF56954 3 459 2.09E-105 T 12-10-2018 AMJ96_CH03648 5faf6418b62c8a2e7656f5c5366c7590 478 Gene3D G3DSA:2.20.200.10 97 347 9.1E-116 T 12-10-2018 AMJ96_CH03648 5faf6418b62c8a2e7656f5c5366c7590 478 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 10 458 4.0E-138 T 12-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 AMJ96_PC00016 81e6029d0ee8395faed07509068cc129 399 Pfam PF07690 Major Facilitator Superfamily 14 355 5.1E-45 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_PC00016 81e6029d0ee8395faed07509068cc129 399 Gene3D G3DSA:1.20.1720.10 8 387 8.5E-102 T 12-10-2018 AMJ96_PC00016 81e6029d0ee8395faed07509068cc129 399 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 5 381 5.5E-85 T 12-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 AMJ96_PC00016 81e6029d0ee8395faed07509068cc129 399 SUPERFAMILY SSF103473 5 392 6.67E-61 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH00496 41b73a654a0ffaafdd43e5f6b9cf1c72 541 PRINTS PR00662 Glucose-6-phosphate isomerase signature 457 475 1.2E-54 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH00496 41b73a654a0ffaafdd43e5f6b9cf1c72 541 PRINTS PR00662 Glucose-6-phosphate isomerase signature 142 161 1.2E-54 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH00496 41b73a654a0ffaafdd43e5f6b9cf1c72 541 PRINTS PR00662 Glucose-6-phosphate isomerase signature 475 489 1.2E-54 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH00496 41b73a654a0ffaafdd43e5f6b9cf1c72 541 PRINTS PR00662 Glucose-6-phosphate isomerase signature 252 270 1.2E-54 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH00496 41b73a654a0ffaafdd43e5f6b9cf1c72 541 PRINTS PR00662 Glucose-6-phosphate isomerase signature 329 350 1.2E-54 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH00496 41b73a654a0ffaafdd43e5f6b9cf1c72 541 PRINTS PR00662 Glucose-6-phosphate isomerase signature 489 502 1.2E-54 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH00496 41b73a654a0ffaafdd43e5f6b9cf1c72 541 Gene3D G3DSA:3.40.50.10490 22 498 7.9E-219 T 12-10-2018 AMJ96_CH00496 41b73a654a0ffaafdd43e5f6b9cf1c72 541 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 256 269 - T 12-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH00496 41b73a654a0ffaafdd43e5f6b9cf1c72 541 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 38 516 40.915 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH00496 41b73a654a0ffaafdd43e5f6b9cf1c72 541 Gene3D G3DSA:1.10.1390.10 499 539 4.7E-18 T 12-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH00496 41b73a654a0ffaafdd43e5f6b9cf1c72 541 SUPERFAMILY SSF53697 6 538 2.06E-206 T 12-10-2018 AMJ96_CH00496 41b73a654a0ffaafdd43e5f6b9cf1c72 541 Pfam PF00342 Phosphoglucose isomerase 44 533 3.2E-214 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH00496 41b73a654a0ffaafdd43e5f6b9cf1c72 541 Gene3D G3DSA:3.40.50.10490 90 282 7.9E-219 T 12-10-2018 AMJ96_CH00496 41b73a654a0ffaafdd43e5f6b9cf1c72 541 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 489 506 - T 12-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH02312 3990087769333d12c8c4016f5c998638 251 SUPERFAMILY SSF52540 1 231 2.48E-41 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02312 3990087769333d12c8c4016f5c998638 251 Gene3D G3DSA:3.40.50.300 1 247 3.9E-58 T 12-10-2018 AMJ96_CH02312 3990087769333d12c8c4016f5c998638 251 SMART SM00382 28 225 1.2E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02312 3990087769333d12c8c4016f5c998638 251 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02312 3990087769333d12c8c4016f5c998638 251 Pfam PF00005 ABC transporter 20 174 7.9E-22 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02312 3990087769333d12c8c4016f5c998638 251 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 2 245 3.5E-105 T 12-10-2018 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524 AMJ96_CH03844 9736c98570653a5b09a1062663340ea8 543 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 463 516 7.9E-7 T 12-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03844 9736c98570653a5b09a1062663340ea8 543 SUPERFAMILY SSF53738 3 211 2.59E-49 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03844 9736c98570653a5b09a1062663340ea8 543 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 184 286 4.2E-13 T 12-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03844 9736c98570653a5b09a1062663340ea8 543 SUPERFAMILY SSF55957 409 543 7.59E-48 T 12-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03844 9736c98570653a5b09a1062663340ea8 543 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 13 152 1.7E-38 T 12-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03844 9736c98570653a5b09a1062663340ea8 543 Gene3D G3DSA:3.30.310.50 410 543 2.3E-51 T 12-10-2018 AMJ96_CH03844 9736c98570653a5b09a1062663340ea8 543 SUPERFAMILY SSF53738 278 414 2.04E-36 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03844 9736c98570653a5b09a1062663340ea8 543 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 241 254 1.3E-21 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03844 9736c98570653a5b09a1062663340ea8 543 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 205 224 1.3E-21 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03844 9736c98570653a5b09a1062663340ea8 543 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 105 119 1.3E-21 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03844 9736c98570653a5b09a1062663340ea8 543 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 270 285 1.3E-21 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03844 9736c98570653a5b09a1062663340ea8 543 Gene3D G3DSA:3.40.120.10 2 188 1.2E-80 T 12-10-2018 AMJ96_CH03844 9736c98570653a5b09a1062663340ea8 543 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 294 407 1.2E-31 T 12-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03844 9736c98570653a5b09a1062663340ea8 543 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 106 115 - T 12-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03844 9736c98570653a5b09a1062663340ea8 543 Gene3D G3DSA:3.40.120.10 291 409 3.5E-45 T 12-10-2018 AMJ96_CH03844 9736c98570653a5b09a1062663340ea8 543 SUPERFAMILY SSF53738 182 291 2.79E-29 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03844 9736c98570653a5b09a1062663340ea8 543 Gene3D G3DSA:3.40.120.10 189 290 1.2E-33 T 12-10-2018 AMJ96_CH02969 a8f1d33a9054c03b77fce60060f68312 74 Pfam PF13467 Ribbon-helix-helix domain 3 65 7.5E-24 T 12-10-2018 IPR027373 Ribbon-helix-helix domain AMJ96_CH02969 a8f1d33a9054c03b77fce60060f68312 74 Gene3D G3DSA:1.10.3990.20 1 73 2.6E-14 T 12-10-2018 IPR038268 Ribbon-helix-helix domain superfamily AMJ96_CH03533 72852540271ee12c93ebcb5f25b2e713 633 Gene3D G3DSA:1.20.144.10 152 343 5.2E-42 T 12-10-2018 AMJ96_CH03533 72852540271ee12c93ebcb5f25b2e713 633 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 488 518 2.6E-9 T 12-10-2018 IPR013425 Autotransporter-associated beta strand repeat AMJ96_CH03533 72852540271ee12c93ebcb5f25b2e713 633 SUPERFAMILY SSF51126 429 630 1.04E-10 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor AMJ96_CH03533 72852540271ee12c93ebcb5f25b2e713 633 Pfam PF01569 PAP2 superfamily 218 321 3.8E-12 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMJ96_CH03533 72852540271ee12c93ebcb5f25b2e713 633 SUPERFAMILY SSF48317 211 332 7.06E-25 T 12-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily AMJ96_CH03533 72852540271ee12c93ebcb5f25b2e713 633 Pfam PF12951 Passenger-associated-transport-repeat 488 516 1.4E-7 T 12-10-2018 IPR013425 Autotransporter-associated beta strand repeat AMJ96_CH03533 72852540271ee12c93ebcb5f25b2e713 633 SMART SM00014 203 324 7.9E-8 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 340 448 3.8E-31 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 Gene3D G3DSA:3.30.390.30 339 461 1.1E-44 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 SUPERFAMILY SSF55424 336 452 1.39E-32 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 320 1.5E-62 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 SUPERFAMILY SSF51905 2 364 2.81E-54 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 Gene3D G3DSA:3.50.50.60 146 263 9.2E-117 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 PIRSF PIRSF000350 1 450 1.9E-77 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 300 307 3.3E-67 T 12-10-2018 AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 137 146 3.3E-67 T 12-10-2018 AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 3.3E-67 T 12-10-2018 AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 443 3.3E-67 T 12-10-2018 AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 197 3.3E-67 T 12-10-2018 AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 336 357 3.3E-67 T 12-10-2018 AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 3.3E-67 T 12-10-2018 AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 401 416 3.3E-67 T 12-10-2018 AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 257 271 3.3E-67 T 12-10-2018 AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 Gene3D G3DSA:3.50.50.60 6 317 9.2E-117 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 2.1E-32 T 12-10-2018 AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 2.1E-32 T 12-10-2018 AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 272 2.1E-32 T 12-10-2018 AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 285 307 2.1E-32 T 12-10-2018 AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 134 152 2.1E-32 T 12-10-2018 AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 TIGRFAM TIGR01424 gluta_reduc_2: glutathione-disulfide reductase 4 449 4.2E-220 T 12-10-2018 IPR006324 Glutathione-disulphide reductase GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081 AMJ96_CH02436 ae0fce5d2ae3c6731334dd8c1e6883ea 461 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 12-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AMJ96_CH01071 7a41ebe456ad33ef189c8d878d76d058 465 SMART SM00304 188 241 2.2E-5 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH01071 7a41ebe456ad33ef189c8d878d76d058 465 Pfam PF00512 His Kinase A (phospho-acceptor) domain 242 308 2.4E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH01071 7a41ebe456ad33ef189c8d878d76d058 465 Gene3D G3DSA:3.30.565.10 312 463 2.7E-31 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH01071 7a41ebe456ad33ef189c8d878d76d058 465 SUPERFAMILY SSF158472 193 240 8.11E-5 T 12-10-2018 AMJ96_CH01071 7a41ebe456ad33ef189c8d878d76d058 465 Gene3D G3DSA:1.10.287.130 193 308 4.4E-18 T 12-10-2018 AMJ96_CH01071 7a41ebe456ad33ef189c8d878d76d058 465 SMART SM00387 353 462 1.6E-32 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH01071 7a41ebe456ad33ef189c8d878d76d058 465 SMART SM00388 242 308 3.4E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH01071 7a41ebe456ad33ef189c8d878d76d058 465 SUPERFAMILY SSF55874 299 462 2.1E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH01071 7a41ebe456ad33ef189c8d878d76d058 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 418 9.1E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH01071 7a41ebe456ad33ef189c8d878d76d058 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 441 9.1E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH01071 7a41ebe456ad33ef189c8d878d76d058 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 404 9.1E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH01071 7a41ebe456ad33ef189c8d878d76d058 465 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 353 460 2.3E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH01071 7a41ebe456ad33ef189c8d878d76d058 465 SUPERFAMILY SSF47384 226 308 1.02E-13 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_PC00228 5cb30288870878e1dc8fe94ccf1fac7a 329 Pfam PF03466 LysR substrate binding domain 97 293 1.2E-27 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PC00228 5cb30288870878e1dc8fe94ccf1fac7a 329 SUPERFAMILY SSF53850 97 293 2.33E-27 T 12-10-2018 AMJ96_PC00228 5cb30288870878e1dc8fe94ccf1fac7a 329 Gene3D G3DSA:1.10.10.10 6 90 7.0E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00228 5cb30288870878e1dc8fe94ccf1fac7a 329 Gene3D G3DSA:3.40.190.290 96 298 3.5E-30 T 12-10-2018 AMJ96_PC00228 5cb30288870878e1dc8fe94ccf1fac7a 329 SUPERFAMILY SSF46785 5 116 1.86E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00228 5cb30288870878e1dc8fe94ccf1fac7a 329 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 8.4E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00228 5cb30288870878e1dc8fe94ccf1fac7a 329 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 8.4E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00228 5cb30288870878e1dc8fe94ccf1fac7a 329 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 8.4E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00228 5cb30288870878e1dc8fe94ccf1fac7a 329 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 1.1E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03445 45b9d92d03b9e7d7ee849bb703c8b613 474 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 413 465 1.9E-8 T 12-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03445 45b9d92d03b9e7d7ee849bb703c8b613 474 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 369 8.3E-10 T 12-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03445 45b9d92d03b9e7d7ee849bb703c8b613 474 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 171 253 7.4E-9 T 12-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03445 45b9d92d03b9e7d7ee849bb703c8b613 474 Gene3D G3DSA:3.40.120.10 255 373 6.6E-38 T 12-10-2018 AMJ96_CH03445 45b9d92d03b9e7d7ee849bb703c8b613 474 Gene3D G3DSA:3.40.120.10 1 143 2.7E-43 T 12-10-2018 AMJ96_CH03445 45b9d92d03b9e7d7ee849bb703c8b613 474 SUPERFAMILY SSF53738 241 369 2.83E-7 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03445 45b9d92d03b9e7d7ee849bb703c8b613 474 Gene3D G3DSA:3.40.120.10 173 253 2.3E-35 T 12-10-2018 AMJ96_CH03445 45b9d92d03b9e7d7ee849bb703c8b613 474 SUPERFAMILY SSF53738 167 253 9.81E-12 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03445 45b9d92d03b9e7d7ee849bb703c8b613 474 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 1 133 1.1E-28 T 12-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03445 45b9d92d03b9e7d7ee849bb703c8b613 474 SUPERFAMILY SSF53738 1 130 4.71E-28 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03445 45b9d92d03b9e7d7ee849bb703c8b613 474 Gene3D G3DSA:3.30.310.50 375 473 6.4E-24 T 12-10-2018 AMJ96_CH03445 45b9d92d03b9e7d7ee849bb703c8b613 474 SUPERFAMILY SSF55957 382 469 7.06E-12 T 12-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_PD00250 a15d64f21127488fe7517d66dea248ce 667 SUPERFAMILY SSF51735 3 157 1.73E-43 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00250 a15d64f21127488fe7517d66dea248ce 667 Gene3D G3DSA:3.30.360.10 148 345 4.9E-43 T 12-10-2018 AMJ96_PD00250 a15d64f21127488fe7517d66dea248ce 667 SUPERFAMILY SSF55347 130 307 6.7E-36 T 12-10-2018 AMJ96_PD00250 a15d64f21127488fe7517d66dea248ce 667 Gene3D G3DSA:3.20.20.100 376 667 1.4E-60 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_PD00250 a15d64f21127488fe7517d66dea248ce 667 Gene3D G3DSA:3.40.50.720 2 147 2.4E-35 T 12-10-2018 AMJ96_PD00250 a15d64f21127488fe7517d66dea248ce 667 SUPERFAMILY SSF51430 387 666 2.36E-56 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_PD00250 a15d64f21127488fe7517d66dea248ce 667 Pfam PF00248 Aldo/keto reductase family 392 665 3.0E-44 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_PD00250 a15d64f21127488fe7517d66dea248ce 667 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 7 119 1.6E-19 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_CH03793 94193252b3efe434f7d41f3ef6295b1b 513 SMART SM00382 173 317 0.0012 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03793 94193252b3efe434f7d41f3ef6295b1b 513 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 177 190 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMJ96_CH03793 94193252b3efe434f7d41f3ef6295b1b 513 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 239 254 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMJ96_CH03793 94193252b3efe434f7d41f3ef6295b1b 513 SUPERFAMILY SSF52172 12 195 2.56E-39 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH03793 94193252b3efe434f7d41f3ef6295b1b 513 Gene3D G3DSA:3.40.50.300 143 323 1.4E-62 T 12-10-2018 AMJ96_CH03793 94193252b3efe434f7d41f3ef6295b1b 513 Pfam PF00158 Sigma-54 interaction domain 153 319 7.3E-67 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMJ96_CH03793 94193252b3efe434f7d41f3ef6295b1b 513 Pfam PF02954 Bacterial regulatory protein, Fis family 461 501 2.7E-12 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMJ96_CH03793 94193252b3efe434f7d41f3ef6295b1b 513 Gene3D G3DSA:1.10.8.60 324 403 5.5E-22 T 12-10-2018 AMJ96_CH03793 94193252b3efe434f7d41f3ef6295b1b 513 SMART SM00448 11 124 2.6E-34 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03793 94193252b3efe434f7d41f3ef6295b1b 513 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 484 504 7.0E-9 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMJ96_CH03793 94193252b3efe434f7d41f3ef6295b1b 513 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 467 484 7.0E-9 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMJ96_CH03793 94193252b3efe434f7d41f3ef6295b1b 513 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 367 376 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AMJ96_CH03793 94193252b3efe434f7d41f3ef6295b1b 513 Gene3D G3DSA:1.10.10.60 459 503 1.4E-14 T 12-10-2018 AMJ96_CH03793 94193252b3efe434f7d41f3ef6295b1b 513 SUPERFAMILY SSF46689 449 504 3.78E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03793 94193252b3efe434f7d41f3ef6295b1b 513 Pfam PF00072 Response regulator receiver domain 13 124 7.5E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03793 94193252b3efe434f7d41f3ef6295b1b 513 SUPERFAMILY SSF52540 152 397 2.0E-66 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03793 94193252b3efe434f7d41f3ef6295b1b 513 Gene3D G3DSA:3.40.50.2300 5 142 1.5E-34 T 12-10-2018 AMJ96_CH00275 8d0fb71138b9df48f89d781fda63d597 360 Gene3D G3DSA:3.30.930.10 8 345 3.4E-115 T 12-10-2018 AMJ96_CH00275 8d0fb71138b9df48f89d781fda63d597 360 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 39 343 2.4E-100 T 12-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AMJ96_CH00275 8d0fb71138b9df48f89d781fda63d597 360 SUPERFAMILY SSF55681 100 344 1.42E-77 T 12-10-2018 AMJ96_CH00275 8d0fb71138b9df48f89d781fda63d597 360 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 344 45.124 T 12-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 AMJ96_CH00275 8d0fb71138b9df48f89d781fda63d597 360 SUPERFAMILY SSF46589 12 99 2.98E-20 T 12-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 AMJ96_CH00275 8d0fb71138b9df48f89d781fda63d597 360 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 1.1E-21 T 12-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMJ96_CH00275 8d0fb71138b9df48f89d781fda63d597 360 Pfam PF01409 tRNA synthetases class II core domain (F) 92 343 2.2E-102 T 12-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 AMJ96_CH00825 a80934dbd26af115851e80d0e1462759 457 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 50 361 1.9E-80 T 12-10-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMJ96_CH00825 a80934dbd26af115851e80d0e1462759 457 PIRSF PIRSF017901 1 457 5.9E-173 T 12-10-2018 IPR035434 Glutamate--cysteine ligase, bacteria and plant GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMJ96_CH00825 a80934dbd26af115851e80d0e1462759 457 SUPERFAMILY SSF55931 26 453 1.86E-60 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMJ96_CH00825 a80934dbd26af115851e80d0e1462759 457 TIGRFAM TIGR01436 glu_cys_lig_pln: glutamate--cysteine ligase 10 457 6.0E-185 T 12-10-2018 IPR011556 Glutamate--cysteine ligase, plant-type GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AMJ96_CH00825 a80934dbd26af115851e80d0e1462759 457 Gene3D G3DSA:3.30.590.20 2 457 4.1E-176 T 12-10-2018 AMJ96_CH00053 834e8e82bd582a86ca11869ec9ff984a 723 Gene3D G3DSA:2.170.170.11 133 262 1.3E-276 T 12-10-2018 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMJ96_CH00053 834e8e82bd582a86ca11869ec9ff984a 723 SUPERFAMILY SSF51645 2 721 5.62E-304 T 12-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMJ96_CH00053 834e8e82bd582a86ca11869ec9ff984a 723 Pfam PF01274 Malate synthase 17 695 8.0E-173 T 12-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMJ96_CH00053 834e8e82bd582a86ca11869ec9ff984a 723 Hamap MF_00641 Malate synthase G [glcB]. 1 723 402.051 T 12-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMJ96_CH00053 834e8e82bd582a86ca11869ec9ff984a 723 Gene3D G3DSA:1.20.1220.12 582 723 5.0E-75 T 12-10-2018 AMJ96_CH00053 834e8e82bd582a86ca11869ec9ff984a 723 Gene3D G3DSA:3.20.20.360 7 578 1.3E-276 T 12-10-2018 AMJ96_CH00053 834e8e82bd582a86ca11869ec9ff984a 723 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 3 720 0.0 T 12-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AMJ96_CH03176 961608832398e6cdd1a16ba0476d7a24 86 Pfam PF04380 Membrane fusogenic activity 5 79 6.8E-28 T 12-10-2018 IPR007475 Membrane fusogenic activity AMJ96_CH00444 49240055efadc8e9d2f4eab404007edc 382 Gene3D G3DSA:3.20.20.70 4 382 8.1E-129 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH00444 49240055efadc8e9d2f4eab404007edc 382 SUPERFAMILY SSF51395 5 379 7.94E-96 T 12-10-2018 AMJ96_CH00444 49240055efadc8e9d2f4eab404007edc 382 PIRSF PIRSF000138 1 382 4.8E-135 T 12-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 AMJ96_CH00444 49240055efadc8e9d2f4eab404007edc 382 Pfam PF01070 FMN-dependent dehydrogenase 16 378 5.7E-128 T 12-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 AMJ96_CH00444 49240055efadc8e9d2f4eab404007edc 382 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 276 282 - T 12-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 AMJ96_CH02258 0a66d3e5cece8c26a31c2e03778b4a70 134 Pfam PF01809 Haemolytic domain 48 110 2.6E-21 T 12-10-2018 IPR002696 Putative membrane protein insertion efficiency factor AMJ96_CH02258 0a66d3e5cece8c26a31c2e03778b4a70 134 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 50 114 2.5E-19 T 12-10-2018 IPR002696 Putative membrane protein insertion efficiency factor AMJ96_CH02258 0a66d3e5cece8c26a31c2e03778b4a70 134 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 59 110 1.0E-21 T 12-10-2018 IPR002696 Putative membrane protein insertion efficiency factor AMJ96_CH02258 0a66d3e5cece8c26a31c2e03778b4a70 134 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 43 111 19.373 T 12-10-2018 IPR002696 Putative membrane protein insertion efficiency factor AMJ96_CH02258 0a66d3e5cece8c26a31c2e03778b4a70 134 SMART SM01234 43 110 2.5E-28 T 12-10-2018 IPR002696 Putative membrane protein insertion efficiency factor AMJ96_CH00138 a87e32da01ecfd3f7c834938f33068e6 251 Pfam PF02348 Cytidylyltransferase 11 221 6.5E-40 T 12-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 AMJ96_CH00138 a87e32da01ecfd3f7c834938f33068e6 251 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 10 240 5.5E-62 T 12-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 AMJ96_CH00138 a87e32da01ecfd3f7c834938f33068e6 251 SUPERFAMILY SSF53448 9 249 8.21E-53 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00138 a87e32da01ecfd3f7c834938f33068e6 251 Gene3D G3DSA:3.90.550.10 8 251 2.8E-75 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00138 a87e32da01ecfd3f7c834938f33068e6 251 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 7 247 34.051 T 12-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 AMJ96_CH01204 4d59339d6585fd49400008681a7c1d89 323 SUPERFAMILY SSF51695 34 319 7.95E-41 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMJ96_CH01204 4d59339d6585fd49400008681a7c1d89 323 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 67 179 2.1E-17 T 12-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 AMJ96_CH01204 4d59339d6585fd49400008681a7c1d89 323 Gene3D G3DSA:3.20.20.190 27 323 6.2E-30 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMJ96_CH02533 08b36e670cc6762dcbcddb873ba7dd79 205 Gene3D G3DSA:3.40.50.150 5 190 2.7E-22 T 12-10-2018 AMJ96_CH02533 08b36e670cc6762dcbcddb873ba7dd79 205 Pfam PF13649 Methyltransferase domain 47 132 1.3E-8 T 12-10-2018 AMJ96_CH02533 08b36e670cc6762dcbcddb873ba7dd79 205 SUPERFAMILY SSF53335 4 190 5.5E-24 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH00179 a051b164402f42d8ff3c31d963f77278 341 TIGRFAM TIGR00749 glk: glucokinase 16 319 2.9E-71 T 12-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 AMJ96_CH00179 a051b164402f42d8ff3c31d963f77278 341 Gene3D G3DSA:3.40.367.20 111 310 1.5E-95 T 12-10-2018 AMJ96_CH00179 a051b164402f42d8ff3c31d963f77278 341 Gene3D G3DSA:3.30.420.40 15 319 1.5E-95 T 12-10-2018 AMJ96_CH00179 a051b164402f42d8ff3c31d963f77278 341 SUPERFAMILY SSF53067 18 326 3.65E-56 T 12-10-2018 AMJ96_CH00179 a051b164402f42d8ff3c31d963f77278 341 Pfam PF02685 Glucokinase 16 325 4.8E-108 T 12-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 AMJ96_CH00179 a051b164402f42d8ff3c31d963f77278 341 Hamap MF_00524 Glucokinase [glk]. 14 327 31.327 T 12-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 AMJ96_CH00830 2a70a61be293899264bd8fe664db8698 479 Pfam PF02913 FAD linked oxidases, C-terminal domain 231 470 4.3E-60 T 12-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AMJ96_CH00830 2a70a61be293899264bd8fe664db8698 479 SUPERFAMILY SSF55103 234 472 8.67E-65 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMJ96_CH00830 2a70a61be293899264bd8fe664db8698 479 Gene3D G3DSA:1.10.45.10 431 471 1.3E-7 T 12-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AMJ96_CH00830 2a70a61be293899264bd8fe664db8698 479 Pfam PF01565 FAD binding domain 56 194 1.8E-41 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMJ96_CH00830 2a70a61be293899264bd8fe664db8698 479 Gene3D G3DSA:3.30.70.2740 349 430 8.4E-8 T 12-10-2018 AMJ96_CH00830 2a70a61be293899264bd8fe664db8698 479 SUPERFAMILY SSF56176 20 231 1.03E-69 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMJ96_CH00830 2a70a61be293899264bd8fe664db8698 479 Gene3D G3DSA:3.30.465.40 20 238 7.3E-69 T 12-10-2018 AMJ96_CH01939 f6ae5111da7a79b5481b3bd05356b587 441 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 185 207 - T 12-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AMJ96_CH01939 f6ae5111da7a79b5481b3bd05356b587 441 SUPERFAMILY SSF51735 4 159 4.1E-29 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01939 f6ae5111da7a79b5481b3bd05356b587 441 Gene3D G3DSA:3.30.360.10 138 348 8.9E-145 T 12-10-2018 AMJ96_CH01939 f6ae5111da7a79b5481b3bd05356b587 441 Gene3D G3DSA:3.30.70.260 349 421 8.9E-145 T 12-10-2018 AMJ96_CH01939 f6ae5111da7a79b5481b3bd05356b587 441 Gene3D G3DSA:3.40.50.720 5 340 8.9E-145 T 12-10-2018 AMJ96_CH01939 f6ae5111da7a79b5481b3bd05356b587 441 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 11 128 6.9E-14 T 12-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 AMJ96_CH01939 f6ae5111da7a79b5481b3bd05356b587 441 SUPERFAMILY SSF55021 352 420 3.77E-7 T 12-10-2018 AMJ96_CH01939 f6ae5111da7a79b5481b3bd05356b587 441 SUPERFAMILY SSF55347 139 304 2.09E-54 T 12-10-2018 AMJ96_CH01939 f6ae5111da7a79b5481b3bd05356b587 441 PIRSF PIRSF000098 2 437 6.0E-159 T 12-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AMJ96_CH01939 f6ae5111da7a79b5481b3bd05356b587 441 Pfam PF00742 Homoserine dehydrogenase 139 316 2.3E-63 T 12-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AMJ96_CH01939 f6ae5111da7a79b5481b3bd05356b587 441 Pfam PF01842 ACT domain 355 421 1.2E-8 T 12-10-2018 IPR002912 ACT domain AMJ96_CH01591 c7045d7e72665b7aa0fd4f37dfafdb42 520 Gene3D G3DSA:3.40.50.720 190 315 3.9E-15 T 12-10-2018 AMJ96_CH01591 c7045d7e72665b7aa0fd4f37dfafdb42 520 Pfam PF02397 Bacterial sugar transferase 326 514 2.7E-65 T 12-10-2018 IPR003362 Bacterial sugar transferase AMJ96_CH01591 c7045d7e72665b7aa0fd4f37dfafdb42 520 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 87 520 2.7E-138 T 12-10-2018 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 AMJ96_CH01591 c7045d7e72665b7aa0fd4f37dfafdb42 520 SUPERFAMILY SSF51735 192 279 2.79E-6 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01591 c7045d7e72665b7aa0fd4f37dfafdb42 520 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 69 520 8.3E-132 T 12-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase AMJ96_CH01591 c7045d7e72665b7aa0fd4f37dfafdb42 520 Pfam PF13727 CoA-binding domain 110 290 1.2E-49 T 12-10-2018 AMJ96_PD00192 233a91ef6d2ae6a8387885fcb0019638 795 Pfam PF01568 Molydopterin dinucleotide binding domain 675 781 1.0E-7 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AMJ96_PD00192 233a91ef6d2ae6a8387885fcb0019638 795 SUPERFAMILY SSF53706 48 660 5.89E-129 T 12-10-2018 AMJ96_PD00192 233a91ef6d2ae6a8387885fcb0019638 795 Pfam PF00384 Molybdopterin oxidoreductase 315 517 1.1E-11 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_PD00192 233a91ef6d2ae6a8387885fcb0019638 795 Pfam PF00384 Molybdopterin oxidoreductase 109 242 3.0E-7 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_PD00192 233a91ef6d2ae6a8387885fcb0019638 795 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 13 787 0.0 T 12-10-2018 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 AMJ96_PD00192 233a91ef6d2ae6a8387885fcb0019638 795 Gene3D G3DSA:3.40.50.740 109 193 2.2E-6 T 12-10-2018 AMJ96_PD00192 233a91ef6d2ae6a8387885fcb0019638 795 SUPERFAMILY SSF50692 674 787 4.52E-14 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMJ96_PD00192 233a91ef6d2ae6a8387885fcb0019638 795 PIRSF PIRSF000144 2 793 0.0 T 12-10-2018 AMJ96_CH01330 00a82b0ca9f3b59ca968ec2dc7ca6e58 165 SUPERFAMILY SSF82093 29 137 2.22E-33 T 12-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 AMJ96_CH01330 00a82b0ca9f3b59ca968ec2dc7ca6e58 165 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 1 141 30.468 T 12-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 AMJ96_CH01330 00a82b0ca9f3b59ca968ec2dc7ca6e58 165 Gene3D G3DSA:2.40.50.140 29 137 2.1E-35 T 12-10-2018 AMJ96_CH01330 00a82b0ca9f3b59ca968ec2dc7ca6e58 165 Pfam PF03100 CcmE 3 131 2.8E-41 T 12-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 AMJ96_CH02635 0c563eb112c3fe85f482a504c03d7021 576 Gene3D G3DSA:3.30.70.1230 4 187 1.9E-55 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02635 0c563eb112c3fe85f482a504c03d7021 576 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 11 174 4.9E-11 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH02635 0c563eb112c3fe85f482a504c03d7021 576 SUPERFAMILY SSF48452 396 547 6.64E-23 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02635 0c563eb112c3fe85f482a504c03d7021 576 Pfam PF13432 Tetratricopeptide repeat 352 378 0.0079 T 12-10-2018 AMJ96_CH02635 0c563eb112c3fe85f482a504c03d7021 576 Gene3D G3DSA:1.25.40.10 324 573 1.6E-30 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02635 0c563eb112c3fe85f482a504c03d7021 576 Pfam PF12895 Anaphase-promoting complex, cyclosome, subunit 3 463 533 3.7E-7 T 12-10-2018 AMJ96_CH02635 0c563eb112c3fe85f482a504c03d7021 576 SUPERFAMILY SSF55073 5 175 2.98E-44 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03970 9782b71b85d716783bf0dc6d8681a5c8 407 SMART SM00044 187 388 6.9E-7 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH03970 9782b71b85d716783bf0dc6d8681a5c8 407 SUPERFAMILY SSF55073 221 404 1.44E-48 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03970 9782b71b85d716783bf0dc6d8681a5c8 407 Gene3D G3DSA:3.30.70.1230 217 406 5.3E-49 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03970 9782b71b85d716783bf0dc6d8681a5c8 407 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 228 398 1.7E-22 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_PD00541 4b9d674cf1b3d7a3f3953afa1e010542 452 SUPERFAMILY SSF51905 13 236 3.5E-19 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00541 4b9d674cf1b3d7a3f3953afa1e010542 452 SUPERFAMILY SSF51905 190 408 2.85E-8 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00541 4b9d674cf1b3d7a3f3953afa1e010542 452 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 14 342 5.9E-112 T 12-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase AMJ96_PD00541 4b9d674cf1b3d7a3f3953afa1e010542 452 Gene3D G3DSA:3.50.50.60 4 428 1.9E-115 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00541 4b9d674cf1b3d7a3f3953afa1e010542 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 17 36 5.0E-6 T 12-10-2018 AMJ96_PD00541 4b9d674cf1b3d7a3f3953afa1e010542 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 150 168 5.0E-6 T 12-10-2018 AMJ96_PD00541 4b9d674cf1b3d7a3f3953afa1e010542 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 192 210 5.0E-6 T 12-10-2018 AMJ96_PD00491 f150f64ea99563bab040c6fa4607ed3e 678 SUPERFAMILY SSF51905 363 678 3.67E-35 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00491 f150f64ea99563bab040c6fa4607ed3e 678 Gene3D G3DSA:3.40.50.720 387 672 8.8E-64 T 12-10-2018 AMJ96_PD00491 f150f64ea99563bab040c6fa4607ed3e 678 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 386 636 7.4E-12 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_PD00491 f150f64ea99563bab040c6fa4607ed3e 678 SUPERFAMILY SSF51395 1 371 3.14E-91 T 12-10-2018 AMJ96_PD00491 f150f64ea99563bab040c6fa4607ed3e 678 Gene3D G3DSA:3.20.20.70 4 377 1.2E-92 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_PD00491 f150f64ea99563bab040c6fa4607ed3e 678 Gene3D G3DSA:3.50.50.60 482 608 8.8E-64 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00491 f150f64ea99563bab040c6fa4607ed3e 678 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 340 4.8E-49 T 12-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AMJ96_PD00491 f150f64ea99563bab040c6fa4607ed3e 678 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 388 407 7.4E-5 T 12-10-2018 AMJ96_PD00491 f150f64ea99563bab040c6fa4607ed3e 678 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 470 488 7.4E-5 T 12-10-2018 AMJ96_PD00491 f150f64ea99563bab040c6fa4607ed3e 678 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 387 412 1.4E-6 T 12-10-2018 AMJ96_PD00491 f150f64ea99563bab040c6fa4607ed3e 678 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 471 485 1.4E-6 T 12-10-2018 AMJ96_CH04227 3ce1315d48a03ae9a7e36a82b8b5991a 324 Pfam PF14561 Tetratricopeptide repeat 235 323 7.4E-28 T 12-10-2018 AMJ96_CH04227 3ce1315d48a03ae9a7e36a82b8b5991a 324 TIGRFAM TIGR01068 thioredoxin: thioredoxin 51 139 8.2E-31 T 12-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMJ96_CH04227 3ce1315d48a03ae9a7e36a82b8b5991a 324 SUPERFAMILY SSF48452 159 285 5.36E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH04227 3ce1315d48a03ae9a7e36a82b8b5991a 324 Pfam PF14559 Tetratricopeptide repeat 162 229 2.0E-14 T 12-10-2018 AMJ96_CH04227 3ce1315d48a03ae9a7e36a82b8b5991a 324 Pfam PF00085 Thioredoxin 38 139 1.1E-26 T 12-10-2018 IPR013766 Thioredoxin domain GO:0045454 AMJ96_CH04227 3ce1315d48a03ae9a7e36a82b8b5991a 324 Gene3D G3DSA:1.25.40.10 237 323 2.6E-23 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH04227 3ce1315d48a03ae9a7e36a82b8b5991a 324 Gene3D G3DSA:3.40.30.10 31 141 1.3E-30 T 12-10-2018 AMJ96_CH04227 3ce1315d48a03ae9a7e36a82b8b5991a 324 SUPERFAMILY SSF52833 32 143 2.04E-34 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH04227 3ce1315d48a03ae9a7e36a82b8b5991a 324 Gene3D G3DSA:1.25.40.10 151 235 9.9E-10 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH04227 3ce1315d48a03ae9a7e36a82b8b5991a 324 PRINTS PR00421 Thioredoxin family signature 65 74 1.0E-5 T 12-10-2018 AMJ96_CH04227 3ce1315d48a03ae9a7e36a82b8b5991a 324 PRINTS PR00421 Thioredoxin family signature 57 65 1.0E-5 T 12-10-2018 AMJ96_CH04227 3ce1315d48a03ae9a7e36a82b8b5991a 324 PRINTS PR00421 Thioredoxin family signature 105 116 1.0E-5 T 12-10-2018 AMJ96_CH04227 3ce1315d48a03ae9a7e36a82b8b5991a 324 ProSitePatterns PS00194 Thioredoxin family active site. 58 76 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AMJ96_CH01615 3a748be5802375bc30984d2b8ac7b348 113 Pfam PF05899 Protein of unknown function (DUF861) 37 109 2.3E-25 T 12-10-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 AMJ96_CH01615 3a748be5802375bc30984d2b8ac7b348 113 SUPERFAMILY SSF51182 17 111 6.85E-19 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH01615 3a748be5802375bc30984d2b8ac7b348 113 Gene3D G3DSA:2.60.120.10 6 112 1.4E-29 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH03136 f7578f0d2b6492d663e26af12f932731 619 Gene3D G3DSA:3.30.450.20 73 193 2.0E-34 T 12-10-2018 AMJ96_CH03136 f7578f0d2b6492d663e26af12f932731 619 Pfam PF00512 His Kinase A (phospho-acceptor) domain 403 469 1.3E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH03136 f7578f0d2b6492d663e26af12f932731 619 Gene3D G3DSA:3.30.565.10 472 619 2.2E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH03136 f7578f0d2b6492d663e26af12f932731 619 SMART SM00388 402 470 1.5E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH03136 f7578f0d2b6492d663e26af12f932731 619 SUPERFAMILY SSF103190 70 203 1.57E-15 T 12-10-2018 IPR029151 Periplasmic sensor-like domain superfamily AMJ96_CH03136 f7578f0d2b6492d663e26af12f932731 619 SUPERFAMILY SSF47384 392 470 1.18E-9 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH03136 f7578f0d2b6492d663e26af12f932731 619 Gene3D G3DSA:1.20.5.170 345 392 5.3E-6 T 12-10-2018 AMJ96_CH03136 f7578f0d2b6492d663e26af12f932731 619 SUPERFAMILY SSF55874 473 616 3.8E-33 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH03136 f7578f0d2b6492d663e26af12f932731 619 Gene3D G3DSA:3.30.450.20 196 308 9.8E-29 T 12-10-2018 AMJ96_CH03136 f7578f0d2b6492d663e26af12f932731 619 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 513 617 3.2E-20 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH03136 f7578f0d2b6492d663e26af12f932731 619 SMART SM00387 512 619 5.9E-28 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH03136 f7578f0d2b6492d663e26af12f932731 619 PRINTS PR00344 Bacterial sensor protein C-terminal signature 570 580 8.5E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03136 f7578f0d2b6492d663e26af12f932731 619 PRINTS PR00344 Bacterial sensor protein C-terminal signature 604 617 8.5E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03136 f7578f0d2b6492d663e26af12f932731 619 PRINTS PR00344 Bacterial sensor protein C-terminal signature 552 566 8.5E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03136 f7578f0d2b6492d663e26af12f932731 619 PRINTS PR00344 Bacterial sensor protein C-terminal signature 581 599 8.5E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03136 f7578f0d2b6492d663e26af12f932731 619 PIRSF PIRSF036431 9 619 2.5E-201 T 12-10-2018 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) AMJ96_CH03136 f7578f0d2b6492d663e26af12f932731 619 Gene3D G3DSA:1.10.287.130 394 468 2.7E-18 T 12-10-2018 AMJ96_CH02775 1bda756a61e056eefc4c659d292b69a9 237 Pfam PF00510 Cytochrome c oxidase subunit III 90 225 3.2E-14 T 12-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02775 1bda756a61e056eefc4c659d292b69a9 237 Gene3D G3DSA:1.20.120.80 48 224 1.2E-31 T 12-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02775 1bda756a61e056eefc4c659d292b69a9 237 SUPERFAMILY SSF81452 2 223 2.75E-35 T 12-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02049 eebecd81663e74913674f5bcdc2dbb62 195 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 29 107 4.9E-8 T 12-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain AMJ96_CH02049 eebecd81663e74913674f5bcdc2dbb62 195 Gene3D G3DSA:3.40.140.10 16 187 2.6E-16 T 12-10-2018 AMJ96_CH02049 eebecd81663e74913674f5bcdc2dbb62 195 SUPERFAMILY SSF53927 19 146 6.77E-22 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMJ96_CH02049 eebecd81663e74913674f5bcdc2dbb62 195 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 60 97 - T 12-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AMJ96_CH03532 97b6496aea3e3e8d7983cea544dc2ba2 430 Gene3D G3DSA:3.40.50.2300 34 368 1.3E-130 T 12-10-2018 AMJ96_CH03532 97b6496aea3e3e8d7983cea544dc2ba2 430 Gene3D G3DSA:3.40.50.2300 147 387 1.3E-130 T 12-10-2018 AMJ96_CH03532 97b6496aea3e3e8d7983cea544dc2ba2 430 SUPERFAMILY SSF53822 31 397 2.12E-87 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH03532 97b6496aea3e3e8d7983cea544dc2ba2 430 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 32 392 4.3E-168 T 12-10-2018 IPR017777 Urea ABC transporter, substrate-binding protein UrtA-like AMJ96_CH03532 97b6496aea3e3e8d7983cea544dc2ba2 430 Pfam PF13433 Periplasmic binding protein domain 32 399 1.9E-167 T 12-10-2018 AMJ96_CH02366 be5b6b1a91c04780d873ce2f8f4857d5 111 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 5 101 1.1E-48 T 12-10-2018 IPR004480 Monothiol glutaredoxin-related AMJ96_CH02366 be5b6b1a91c04780d873ce2f8f4857d5 111 Gene3D G3DSA:3.40.30.10 8 103 1.5E-35 T 12-10-2018 AMJ96_CH02366 be5b6b1a91c04780d873ce2f8f4857d5 111 PIRSF PIRSF005894 1 108 3.9E-53 T 12-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 AMJ96_CH02366 be5b6b1a91c04780d873ce2f8f4857d5 111 SUPERFAMILY SSF52833 2 105 4.02E-37 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH02366 be5b6b1a91c04780d873ce2f8f4857d5 111 Pfam PF00462 Glutaredoxin 17 81 5.8E-20 T 12-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AMJ96_PD00142 32c7f887b315eccce80a0cedcc319558 500 SUPERFAMILY SSF53067 253 495 1.48E-71 T 12-10-2018 AMJ96_PD00142 32c7f887b315eccce80a0cedcc319558 500 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 134 146 - T 12-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AMJ96_PD00142 32c7f887b315eccce80a0cedcc319558 500 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 4 493 2.4E-206 T 12-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 AMJ96_PD00142 32c7f887b315eccce80a0cedcc319558 500 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 260 450 7.4E-51 T 12-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AMJ96_PD00142 32c7f887b315eccce80a0cedcc319558 500 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 360 380 - T 12-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AMJ96_PD00142 32c7f887b315eccce80a0cedcc319558 500 PIRSF PIRSF000538 2 498 2.7E-165 T 12-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AMJ96_PD00142 32c7f887b315eccce80a0cedcc319558 500 Gene3D G3DSA:3.30.420.40 2 251 1.2E-107 T 12-10-2018 AMJ96_PD00142 32c7f887b315eccce80a0cedcc319558 500 Hamap MF_00186 Glycerol kinase [glpK]. 2 497 53.452 T 12-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 AMJ96_PD00142 32c7f887b315eccce80a0cedcc319558 500 Gene3D G3DSA:3.30.420.40 252 496 6.7E-81 T 12-10-2018 AMJ96_PD00142 32c7f887b315eccce80a0cedcc319558 500 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 250 5.5E-80 T 12-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AMJ96_PD00142 32c7f887b315eccce80a0cedcc319558 500 SUPERFAMILY SSF53067 4 253 7.77E-95 T 12-10-2018 AMJ96_CH03889 db296e46461ed90972a2b35b6646bd15 162 PIRSF PIRSF016487 1 156 2.6E-63 T 12-10-2018 IPR012042 Inorganic triphosphatase NeuTTM/CthTTM-like AMJ96_CH03889 db296e46461ed90972a2b35b6646bd15 162 Gene3D G3DSA:2.40.320.10 1 152 3.4E-45 T 12-10-2018 AMJ96_CH03889 db296e46461ed90972a2b35b6646bd15 162 SMART SM01118 2 149 3.2E-20 T 12-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 AMJ96_CH03889 db296e46461ed90972a2b35b6646bd15 162 Pfam PF01928 CYTH domain 3 136 1.3E-15 T 12-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 AMJ96_CH03889 db296e46461ed90972a2b35b6646bd15 162 SUPERFAMILY SSF55154 1 149 6.7E-39 T 12-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 AMJ96_PD00135 faf480e4b983f9af7e19c4722ad9b1b7 503 SUPERFAMILY SSF54373 232 325 1.61E-5 T 12-10-2018 AMJ96_PD00135 faf480e4b983f9af7e19c4722ad9b1b7 503 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 386 493 7.6E-14 T 12-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMJ96_PD00135 faf480e4b983f9af7e19c4722ad9b1b7 503 Gene3D G3DSA:3.30.9.10 84 326 7.5E-132 T 12-10-2018 AMJ96_PD00135 faf480e4b983f9af7e19c4722ad9b1b7 503 Gene3D G3DSA:1.10.8.870 399 467 4.5E-26 T 12-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMJ96_PD00135 faf480e4b983f9af7e19c4722ad9b1b7 503 SUPERFAMILY SSF51905 5 341 1.81E-35 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00135 faf480e4b983f9af7e19c4722ad9b1b7 503 Gene3D G3DSA:3.50.50.60 7 371 7.5E-132 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00135 faf480e4b983f9af7e19c4722ad9b1b7 503 Pfam PF01266 FAD dependent oxidoreductase 7 362 4.1E-53 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_PD00135 faf480e4b983f9af7e19c4722ad9b1b7 503 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 11 28 - T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMJ96_PD00135 faf480e4b983f9af7e19c4722ad9b1b7 503 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 6 18 8.2E-27 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMJ96_PD00135 faf480e4b983f9af7e19c4722ad9b1b7 503 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 19 29 8.2E-27 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMJ96_PD00135 faf480e4b983f9af7e19c4722ad9b1b7 503 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 352 364 8.2E-27 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMJ96_PD00135 faf480e4b983f9af7e19c4722ad9b1b7 503 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 80 92 8.2E-27 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMJ96_PD00135 faf480e4b983f9af7e19c4722ad9b1b7 503 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 35 47 8.2E-27 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMJ96_PD00135 faf480e4b983f9af7e19c4722ad9b1b7 503 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 319 325 8.2E-27 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 AMJ96_PC00287 b6a5eaf4ed5b8ee967a8db2163414fdb 401 Gene3D G3DSA:3.40.50.2300 148 366 4.3E-111 T 12-10-2018 AMJ96_PC00287 b6a5eaf4ed5b8ee967a8db2163414fdb 401 SUPERFAMILY SSF53822 29 400 7.25E-92 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PC00287 b6a5eaf4ed5b8ee967a8db2163414fdb 401 Pfam PF13458 Periplasmic binding protein 28 365 7.0E-89 T 12-10-2018 IPR028081 Leucine-binding protein domain AMJ96_PC00287 b6a5eaf4ed5b8ee967a8db2163414fdb 401 Gene3D G3DSA:3.40.50.2300 52 358 4.3E-111 T 12-10-2018 AMJ96_CH00343 8f6e1a535b3c7667be705aa71fe9f1b2 154 SUPERFAMILY SSF46785 8 68 1.7E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00343 8f6e1a535b3c7667be705aa71fe9f1b2 154 Pfam PF13412 Winged helix-turn-helix DNA-binding 8 55 1.1E-16 T 12-10-2018 AMJ96_CH00343 8f6e1a535b3c7667be705aa71fe9f1b2 154 Gene3D G3DSA:3.30.70.920 59 144 1.2E-19 T 12-10-2018 AMJ96_CH00343 8f6e1a535b3c7667be705aa71fe9f1b2 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 24 35 2.2E-16 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH00343 8f6e1a535b3c7667be705aa71fe9f1b2 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 8 24 2.2E-16 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH00343 8f6e1a535b3c7667be705aa71fe9f1b2 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 35 54 2.2E-16 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH00343 8f6e1a535b3c7667be705aa71fe9f1b2 154 SMART SM00344 8 114 1.0E-36 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMJ96_CH00343 8f6e1a535b3c7667be705aa71fe9f1b2 154 SUPERFAMILY SSF54909 69 143 1.23E-14 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH00343 8f6e1a535b3c7667be705aa71fe9f1b2 154 Pfam PF01037 Lrp/AsnC ligand binding domain 74 136 1.0E-13 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMJ96_CH00343 8f6e1a535b3c7667be705aa71fe9f1b2 154 Gene3D G3DSA:1.10.10.10 2 58 5.8E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00343 8f6e1a535b3c7667be705aa71fe9f1b2 154 ProSitePatterns PS00519 AsnC-type HTH domain signature. 26 52 - T 12-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AMJ96_CH02121 7c31c9009e438e1908fe6cb6eeedeb95 247 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02121 7c31c9009e438e1908fe6cb6eeedeb95 247 SMART SM00382 30 216 4.6E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02121 7c31c9009e438e1908fe6cb6eeedeb95 247 SUPERFAMILY SSF52540 1 233 9.71E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02121 7c31c9009e438e1908fe6cb6eeedeb95 247 Gene3D G3DSA:3.40.50.300 1 246 2.3E-74 T 12-10-2018 AMJ96_CH02121 7c31c9009e438e1908fe6cb6eeedeb95 247 Pfam PF00005 ABC transporter 22 167 1.1E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00405 3ceacccb32277d89df382ee64c6577b5 242 SUPERFAMILY SSF46785 9 80 4.41E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00405 3ceacccb32277d89df382ee64c6577b5 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 1.1E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00405 3ceacccb32277d89df382ee64c6577b5 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 1.1E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00405 3ceacccb32277d89df382ee64c6577b5 242 Pfam PF07729 FCD domain 98 223 1.9E-19 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00405 3ceacccb32277d89df382ee64c6577b5 242 Gene3D G3DSA:1.20.120.530 97 238 1.5E-24 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00405 3ceacccb32277d89df382ee64c6577b5 242 SMART SM00345 17 76 1.2E-21 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00405 3ceacccb32277d89df382ee64c6577b5 242 SUPERFAMILY SSF48008 97 234 6.54E-24 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00405 3ceacccb32277d89df382ee64c6577b5 242 SMART SM00895 98 225 9.1E-20 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00405 3ceacccb32277d89df382ee64c6577b5 242 Gene3D G3DSA:1.10.10.10 7 78 6.3E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00405 3ceacccb32277d89df382ee64c6577b5 242 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 76 2.6E-21 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH01206 58de1fc33af4cb429ea159858b95109d 336 Gene3D G3DSA:3.60.15.10 15 173 1.7E-20 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH01206 58de1fc33af4cb429ea159858b95109d 336 SUPERFAMILY SSF56281 4 317 1.05E-64 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH01206 58de1fc33af4cb429ea159858b95109d 336 TIGRFAM TIGR04122 Xnuc_lig_assoc: putative exonuclease, DNA ligase-associated 6 334 2.6E-145 T 12-10-2018 IPR026360 Putative exonuclease, DNA ligase-associated AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 Gene3D G3DSA:3.30.450.20 35 169 3.7E-21 T 12-10-2018 AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 SUPERFAMILY SSF52172 790 907 4.84E-25 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 Gene3D G3DSA:3.40.50.2300 788 909 9.3E-23 T 12-10-2018 AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 Pfam PF00072 Response regulator receiver domain 644 755 1.1E-10 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 Pfam PF00072 Response regulator receiver domain 794 899 1.8E-12 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 SMART SM00388 393 459 2.0E-6 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 Pfam PF13185 GAF domain 192 338 5.7E-15 T 12-10-2018 IPR003018 GAF domain GO:0005515 AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 Gene3D G3DSA:3.40.50.2300 641 769 3.1E-22 T 12-10-2018 AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 SMART SM00387 500 623 2.5E-23 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 501 619 7.5E-16 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 SMART SM00065 192 347 1.0E-9 T 12-10-2018 IPR003018 GAF domain GO:0005515 AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 Gene3D G3DSA:3.30.565.10 461 630 2.9E-38 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 SUPERFAMILY SSF55781 192 346 1.09E-18 T 12-10-2018 AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 SUPERFAMILY SSF47384 382 457 5.1E-9 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 SUPERFAMILY SSF55785 65 156 3.14E-7 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 Gene3D G3DSA:3.30.450.40 188 347 5.1E-34 T 12-10-2018 IPR029016 GAF-like domain superfamily AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 Pfam PF08448 PAS fold 59 157 4.2E-8 T 12-10-2018 IPR013656 PAS fold-4 AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 PRINTS PR00344 Bacterial sensor protein C-terminal signature 583 601 6.3E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 PRINTS PR00344 Bacterial sensor protein C-terminal signature 607 620 6.3E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 PRINTS PR00344 Bacterial sensor protein C-terminal signature 552 566 6.3E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 PRINTS PR00344 Bacterial sensor protein C-terminal signature 570 580 6.3E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 Pfam PF00512 His Kinase A (phospho-acceptor) domain 394 458 2.4E-7 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 SUPERFAMILY SSF52172 643 769 1.32E-23 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 SMART SM00448 642 755 2.3E-12 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 SMART SM00448 791 899 3.9E-15 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 SUPERFAMILY SSF55874 449 620 2.88E-32 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PC00220 0f6d971a56a382061a3d96c23d6cede8 911 Gene3D G3DSA:1.10.287.130 385 458 3.0E-19 T 12-10-2018 AMJ96_CH03277 847723b0a447b124c160349183a77ad9 487 SUPERFAMILY SSF47741 96 166 9.81E-33 T 12-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily AMJ96_CH03277 847723b0a447b124c160349183a77ad9 487 Gene3D G3DSA:3.10.20.30 1 87 8.7E-29 T 12-10-2018 IPR012675 Beta-grasp domain superfamily AMJ96_CH03277 847723b0a447b124c160349183a77ad9 487 Gene3D G3DSA:3.30.43.10 202 251 3.0E-19 T 12-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AMJ96_CH03277 847723b0a447b124c160349183a77ad9 487 TIGRFAM TIGR02963 xanthine_xdhA: xanthine dehydrogenase, small subunit 5 473 1.4E-210 T 12-10-2018 IPR014307 Xanthine dehydrogenase, small subunit GO:0004854|GO:0004855|GO:0050660|GO:0055114 KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999|Reactome: R-HSA-74259|Reactome: R-HSA-8851680 AMJ96_CH03277 847723b0a447b124c160349183a77ad9 487 SUPERFAMILY SSF55447 368 475 4.19E-33 T 12-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily AMJ96_CH03277 847723b0a447b124c160349183a77ad9 487 SUPERFAMILY SSF56176 186 364 3.52E-57 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMJ96_CH03277 847723b0a447b124c160349183a77ad9 487 SUPERFAMILY SSF54292 4 88 2.08E-18 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMJ96_CH03277 847723b0a447b124c160349183a77ad9 487 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 201 364 3.5E-54 T 12-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 AMJ96_CH03277 847723b0a447b124c160349183a77ad9 487 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 372 472 5.9E-33 T 12-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMJ96_CH03277 847723b0a447b124c160349183a77ad9 487 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 42 50 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMJ96_CH03277 847723b0a447b124c160349183a77ad9 487 PIRSF PIRSF036557 2 486 6.7E-204 T 12-10-2018 IPR012175 Xanthine dehydrogenase, small subunit, bacteria AMJ96_CH03277 847723b0a447b124c160349183a77ad9 487 Gene3D G3DSA:3.30.465.10 252 364 8.6E-39 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMJ96_CH03277 847723b0a447b124c160349183a77ad9 487 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 11 55 3.4E-4 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMJ96_CH03277 847723b0a447b124c160349183a77ad9 487 SMART SM01092 371 473 9.6E-37 T 12-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal AMJ96_CH03277 847723b0a447b124c160349183a77ad9 487 Pfam PF01799 [2Fe-2S] binding domain 84 157 2.1E-30 T 12-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 AMJ96_CH03277 847723b0a447b124c160349183a77ad9 487 Gene3D G3DSA:1.10.150.120 88 192 3.8E-33 T 12-10-2018 AMJ96_CH03277 847723b0a447b124c160349183a77ad9 487 Gene3D G3DSA:3.30.390.50 366 476 1.3E-27 T 12-10-2018 AMJ96_CH02353 ac00a9007958cee77502b7b67301975e 286 Gene3D G3DSA:3.40.50.10860 10 270 1.2E-78 T 12-10-2018 AMJ96_CH02353 ac00a9007958cee77502b7b67301975e 286 Gene3D G3DSA:3.40.50.720 108 248 1.2E-78 T 12-10-2018 AMJ96_CH02353 ac00a9007958cee77502b7b67301975e 286 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 10 97 1.5E-21 T 12-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AMJ96_CH02353 ac00a9007958cee77502b7b67301975e 286 SUPERFAMILY SSF53223 5 109 7.48E-26 T 12-10-2018 AMJ96_CH02353 ac00a9007958cee77502b7b67301975e 286 SUPERFAMILY SSF51735 110 280 4.65E-38 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03505 bce859eb85d84827c3890d0306bbfd6c 417 Pfam PF01546 Peptidase family M20/M25/M40 85 410 5.8E-38 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 AMJ96_CH03505 bce859eb85d84827c3890d0306bbfd6c 417 Pfam PF07687 Peptidase dimerisation domain 216 310 9.1E-6 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain AMJ96_CH03505 bce859eb85d84827c3890d0306bbfd6c 417 PIRSF PIRSF001235 8 415 3.5E-117 T 12-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 AMJ96_CH03505 bce859eb85d84827c3890d0306bbfd6c 417 Gene3D G3DSA:3.40.630.10 23 406 6.7E-135 T 12-10-2018 AMJ96_CH03505 bce859eb85d84827c3890d0306bbfd6c 417 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 14 411 1.7E-117 T 12-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 AMJ96_CH03505 bce859eb85d84827c3890d0306bbfd6c 417 Gene3D G3DSA:3.30.70.360 217 331 6.7E-135 T 12-10-2018 AMJ96_CH03505 bce859eb85d84827c3890d0306bbfd6c 417 SUPERFAMILY SSF53187 6 413 6.54E-88 T 12-10-2018 AMJ96_CH03505 bce859eb85d84827c3890d0306bbfd6c 417 SUPERFAMILY SSF55031 217 333 4.45E-28 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 Pfam PF08448 PAS fold 169 279 1.2E-13 T 12-10-2018 IPR013656 PAS fold-4 AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 SMART SM00086 108 150 12.0 T 12-10-2018 IPR001610 PAC motif AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 SMART SM00086 234 277 210.0 T 12-10-2018 IPR001610 PAC motif AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 SMART SM00086 362 404 13.0 T 12-10-2018 IPR001610 PAC motif AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 Gene3D G3DSA:3.30.450.20 155 283 9.6E-15 T 12-10-2018 AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 Gene3D G3DSA:3.30.450.20 30 154 1.9E-15 T 12-10-2018 AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 SUPERFAMILY SSF55785 147 275 2.26E-17 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 SUPERFAMILY SSF55785 274 402 9.18E-22 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 36 157 1.3E-10 T 12-10-2018 IPR000014 PAS domain AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 291 410 6.2E-12 T 12-10-2018 IPR000014 PAS domain AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 167 283 7.4E-10 T 12-10-2018 IPR000014 PAS domain AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 SMART SM00267 404 576 5.0E-67 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 Pfam PF00989 PAS fold 38 147 5.0E-9 T 12-10-2018 IPR013767 PAS fold GO:0006355 AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 Pfam PF00989 PAS fold 293 401 7.9E-11 T 12-10-2018 IPR013767 PAS fold GO:0006355 AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 Gene3D G3DSA:3.20.20.450 590 837 2.7E-95 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 SUPERFAMILY SSF141868 591 837 1.23E-82 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 SUPERFAMILY SSF55785 49 158 1.06E-16 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 412 574 2.3E-43 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 Pfam PF00990 Diguanylate cyclase, GGDEF domain 415 571 1.8E-51 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 SUPERFAMILY SSF55073 421 578 3.69E-51 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 Gene3D G3DSA:3.30.70.270 414 589 5.4E-61 T 12-10-2018 AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 SMART SM00052 586 830 4.4E-111 T 12-10-2018 IPR001633 EAL domain AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 SMART SM00091 162 228 0.33 T 12-10-2018 IPR000014 PAS domain AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 SMART SM00091 36 101 4.5E-4 T 12-10-2018 IPR000014 PAS domain AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 SMART SM00091 289 355 7.6E-6 T 12-10-2018 IPR000014 PAS domain AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 Gene3D G3DSA:3.30.450.20 285 413 9.7E-20 T 12-10-2018 AMJ96_PB00153 eccb76141a5d24bda06fc60ca80dfffb 852 Pfam PF00563 EAL domain 592 824 1.2E-68 T 12-10-2018 IPR001633 EAL domain AMJ96_PB00016 128f9364891453dcbe9f1956b687d576 467 Gene3D G3DSA:3.40.50.10140 3 124 1.1E-11 T 12-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily AMJ96_PB00016 128f9364891453dcbe9f1956b687d576 467 SUPERFAMILY SSF52200 2 93 1.7E-11 T 12-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily AMJ96_PB00016 128f9364891453dcbe9f1956b687d576 467 SUPERFAMILY SSF51713 144 447 3.01E-27 T 12-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMJ96_PB00016 128f9364891453dcbe9f1956b687d576 467 Pfam PF13676 TIR domain 4 101 4.0E-13 T 12-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 AMJ96_PB00016 128f9364891453dcbe9f1956b687d576 467 Gene3D G3DSA:3.20.20.105 143 463 2.3E-16 T 12-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMJ96_PD00672 266e4b3902f1871b158936027cbb87d2 391 Pfam PF03743 Bacterial conjugation TrbI-like protein 185 358 1.7E-53 T 12-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI AMJ96_PD00672 266e4b3902f1871b158936027cbb87d2 391 Gene3D G3DSA:2.40.128.260 308 367 6.7E-11 T 12-10-2018 AMJ96_PD00672 266e4b3902f1871b158936027cbb87d2 391 Gene3D G3DSA:2.40.128.260 178 307 6.0E-45 T 12-10-2018 AMJ96_PA00179 1b83a55747fc2e23688f986d0755b33f 298 SUPERFAMILY SSF103481 49 153 1.07E-13 T 12-10-2018 AMJ96_PA00179 1b83a55747fc2e23688f986d0755b33f 298 Pfam PF00892 EamA-like transporter family 160 285 4.1E-10 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_PA00179 1b83a55747fc2e23688f986d0755b33f 298 Pfam PF00892 EamA-like transporter family 17 150 4.8E-20 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_PA00179 1b83a55747fc2e23688f986d0755b33f 298 SUPERFAMILY SSF103481 193 288 3.79E-11 T 12-10-2018 AMJ96_CH01931 23ef9788b88144a3d296f07ef850514d 158 SUPERFAMILY SSF51230 83 158 6.41E-24 T 12-10-2018 IPR011053 Single hybrid motif AMJ96_CH01931 23ef9788b88144a3d296f07ef850514d 158 Gene3D G3DSA:2.40.50.100 81 158 1.6E-29 T 12-10-2018 AMJ96_CH01931 23ef9788b88144a3d296f07ef850514d 158 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 114 131 - T 12-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_CH01931 23ef9788b88144a3d296f07ef850514d 158 Pfam PF00364 Biotin-requiring enzyme 84 157 1.8E-21 T 12-10-2018 IPR000089 Biotin/lipoyl attachment AMJ96_CH01931 23ef9788b88144a3d296f07ef850514d 158 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 119 132 1.5E-12 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AMJ96_CH01931 23ef9788b88144a3d296f07ef850514d 158 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 87 100 1.5E-12 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AMJ96_CH01931 23ef9788b88144a3d296f07ef850514d 158 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 104 118 1.5E-12 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AMJ96_CH01931 23ef9788b88144a3d296f07ef850514d 158 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 12 158 1.3E-41 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AMJ96_PA00136 1274d78d7a9f30e39b8478ee5c0553fc 175 Gene3D G3DSA:2.60.40.2230 20 175 6.2E-33 T 12-10-2018 IPR038507 YcnI-like superfamily AMJ96_PA00136 1274d78d7a9f30e39b8478ee5c0553fc 175 Pfam PF07987 Domain of unkown function (DUF1775) 22 168 6.7E-49 T 12-10-2018 IPR012533 YcnI-like AMJ96_PB00420 3cd8df32b12368baac4da14ea8d516a2 715 SUPERFAMILY SSF90123 151 458 1.05E-59 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_PB00420 3cd8df32b12368baac4da14ea8d516a2 715 Gene3D G3DSA:1.20.1560.10 148 462 4.0E-70 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_PB00420 3cd8df32b12368baac4da14ea8d516a2 715 TIGRFAM TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter 10 710 1.2E-157 T 12-10-2018 IPR005897 Peptidase C39, ABC-type bacteriocin transporter GO:0008234|GO:0016020|GO:0022885|GO:0043213 AMJ96_PB00420 3cd8df32b12368baac4da14ea8d516a2 715 ProSitePatterns PS00211 ABC transporters family signature. 614 628 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PB00420 3cd8df32b12368baac4da14ea8d516a2 715 Pfam PF00005 ABC transporter 494 642 1.4E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PB00420 3cd8df32b12368baac4da14ea8d516a2 715 SMART SM00382 502 689 1.6E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PB00420 3cd8df32b12368baac4da14ea8d516a2 715 Gene3D G3DSA:3.40.50.300 470 715 3.8E-76 T 12-10-2018 AMJ96_PB00420 3cd8df32b12368baac4da14ea8d516a2 715 Pfam PF00664 ABC transporter transmembrane region 166 433 3.9E-45 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_PB00420 3cd8df32b12368baac4da14ea8d516a2 715 Pfam PF03412 Peptidase C39 family 9 137 6.9E-32 T 12-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 AMJ96_PB00420 3cd8df32b12368baac4da14ea8d516a2 715 SUPERFAMILY SSF52540 474 711 6.41E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PB00420 3cd8df32b12368baac4da14ea8d516a2 715 Gene3D G3DSA:3.90.70.10 1 146 7.2E-44 T 12-10-2018 AMJ96_CH01989 5491311edbf4398eb872bb4d0183cc57 354 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 34 98 7.3E-14 T 12-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 AMJ96_CH01989 5491311edbf4398eb872bb4d0183cc57 354 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 276 309 3.2E-7 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH01989 5491311edbf4398eb872bb4d0183cc57 354 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 240 275 4.5E-9 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH01989 5491311edbf4398eb872bb4d0183cc57 354 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 146 179 7.7E-11 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH01989 5491311edbf4398eb872bb4d0183cc57 354 SUPERFAMILY SSF51161 44 333 2.29E-74 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily AMJ96_CH01989 5491311edbf4398eb872bb4d0183cc57 354 Gene3D G3DSA:2.160.10.10 119 327 3.7E-60 T 12-10-2018 AMJ96_CH01989 5491311edbf4398eb872bb4d0183cc57 354 Gene3D G3DSA:3.40.1390.10 6 109 2.1E-16 T 12-10-2018 AMJ96_CH01989 5491311edbf4398eb872bb4d0183cc57 354 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 137 165 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMJ96_CH01989 5491311edbf4398eb872bb4d0183cc57 354 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 14 343 34.454 T 12-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 AMJ96_CH01989 5491311edbf4398eb872bb4d0183cc57 354 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 285 313 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMJ96_CH01989 5491311edbf4398eb872bb4d0183cc57 354 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 17 344 4.6E-117 T 12-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 AMJ96_CH02383 a212329b41fd04bdd371be374d964b87 208 Gene3D G3DSA:1.20.1050.10 83 188 1.1E-42 T 12-10-2018 AMJ96_CH02383 a212329b41fd04bdd371be374d964b87 208 SUPERFAMILY SSF47616 73 196 9.47E-18 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMJ96_CH02383 a212329b41fd04bdd371be374d964b87 208 Gene3D G3DSA:3.40.30.10 7 193 1.1E-42 T 12-10-2018 AMJ96_CH02383 a212329b41fd04bdd371be374d964b87 208 SUPERFAMILY SSF52833 5 86 8.73E-22 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH02383 a212329b41fd04bdd371be374d964b87 208 Pfam PF13417 Glutathione S-transferase, N-terminal domain 16 81 5.9E-13 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMJ96_CH00204 c059c13cdbbca0eb8e5e32dcda38e320 406 Hamap MF_00740 Phosphopentomutase [deoB]. 1 406 52.929 T 12-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AMJ96_CH00204 c059c13cdbbca0eb8e5e32dcda38e320 406 TIGRFAM TIGR01696 deoB: phosphopentomutase 3 402 2.5E-141 T 12-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AMJ96_CH00204 c059c13cdbbca0eb8e5e32dcda38e320 406 SUPERFAMILY SSF53649 3 406 4.71E-75 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 AMJ96_CH00204 c059c13cdbbca0eb8e5e32dcda38e320 406 Pfam PF01676 Metalloenzyme superfamily 3 397 3.7E-37 T 12-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 AMJ96_CH00204 c059c13cdbbca0eb8e5e32dcda38e320 406 PIRSF PIRSF001491 1 406 1.7E-154 T 12-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AMJ96_CH00204 c059c13cdbbca0eb8e5e32dcda38e320 406 SUPERFAMILY SSF143856 119 235 2.62E-47 T 12-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AMJ96_CH00204 c059c13cdbbca0eb8e5e32dcda38e320 406 Gene3D G3DSA:3.30.70.1250 117 238 2.4E-152 T 12-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AMJ96_CH00204 c059c13cdbbca0eb8e5e32dcda38e320 406 Gene3D G3DSA:3.40.720.10 3 406 2.4E-152 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 AMJ96_PD00265 aa8816641bcead0adf43a80fb7925125 400 Gene3D G3DSA:1.20.1250.20 8 203 1.6E-21 T 12-10-2018 AMJ96_PD00265 aa8816641bcead0adf43a80fb7925125 400 Gene3D G3DSA:1.20.1250.20 212 398 2.7E-18 T 12-10-2018 AMJ96_PD00265 aa8816641bcead0adf43a80fb7925125 400 Pfam PF07690 Major Facilitator Superfamily 23 358 2.5E-32 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_PD00265 aa8816641bcead0adf43a80fb7925125 400 SUPERFAMILY SSF103473 9 395 1.26E-52 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH03107 9fbc4ef849430595fd172c450cf06619 230 SUPERFAMILY SSF56037 49 193 2.2E-28 T 12-10-2018 AMJ96_CH03107 9fbc4ef849430595fd172c450cf06619 230 SMART SM00873 59 206 5.1E-11 T 12-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AMJ96_CH03107 9fbc4ef849430595fd172c450cf06619 230 Pfam PF03483 B3/4 domain 61 193 2.2E-20 T 12-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AMJ96_CH03107 9fbc4ef849430595fd172c450cf06619 230 Gene3D G3DSA:3.50.40.10 70 204 3.1E-7 T 12-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 AMJ96_CH03186 34cf0865f89c3443c5a2dae0548677ff 237 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 24 232 4.1E-20 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH03186 34cf0865f89c3443c5a2dae0548677ff 237 Gene3D G3DSA:3.40.190.10 24 231 7.9E-30 T 12-10-2018 AMJ96_CH03186 34cf0865f89c3443c5a2dae0548677ff 237 SMART SM00062 20 234 0.0034 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH03186 34cf0865f89c3443c5a2dae0548677ff 237 SUPERFAMILY SSF53850 17 231 2.8E-34 T 12-10-2018 AMJ96_CH03186 34cf0865f89c3443c5a2dae0548677ff 237 Gene3D G3DSA:3.40.190.10 103 192 7.9E-30 T 12-10-2018 AMJ96_PC00467 1e25b6fa44b64a34d8b634ac184f97ee 331 SMART SM00470 63 155 2.7E-22 T 12-10-2018 IPR003115 ParB/Sulfiredoxin AMJ96_PC00467 1e25b6fa44b64a34d8b634ac184f97ee 331 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 60 239 2.9E-32 T 12-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 AMJ96_PC00467 1e25b6fa44b64a34d8b634ac184f97ee 331 Pfam PF07506 RepB plasmid partitioning protein 156 321 9.1E-22 T 12-10-2018 IPR011111 RepB plasmid partition AMJ96_PC00467 1e25b6fa44b64a34d8b634ac184f97ee 331 Gene3D G3DSA:3.90.1530.30 81 141 1.2E-10 T 12-10-2018 AMJ96_PC00467 1e25b6fa44b64a34d8b634ac184f97ee 331 SUPERFAMILY SSF109709 149 250 1.62E-5 T 12-10-2018 AMJ96_PC00467 1e25b6fa44b64a34d8b634ac184f97ee 331 Pfam PF02195 ParB-like nuclease domain 66 154 9.4E-17 T 12-10-2018 IPR003115 ParB/Sulfiredoxin AMJ96_PC00467 1e25b6fa44b64a34d8b634ac184f97ee 331 SUPERFAMILY SSF110849 63 157 9.94E-18 T 12-10-2018 IPR036086 ParB/Sulfiredoxin superfamily AMJ96_PC00467 1e25b6fa44b64a34d8b634ac184f97ee 331 TIGRFAM TIGR03454 partition_RepB: plasmid partitioning protein RepB 2 323 4.7E-112 T 12-10-2018 IPR017819 Plasmid partitioning protein, RepB AMJ96_PC00442 e993142f622fe439680c8f464840c7b4 134 SMART SM00530 15 70 3.2E-11 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_PC00442 e993142f622fe439680c8f464840c7b4 134 Gene3D G3DSA:1.10.260.40 6 75 5.9E-16 T 12-10-2018 AMJ96_PC00442 e993142f622fe439680c8f464840c7b4 134 Pfam PF01381 Helix-turn-helix 16 68 4.3E-12 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_PC00442 e993142f622fe439680c8f464840c7b4 134 SUPERFAMILY SSF47413 2 77 1.66E-25 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 Gene3D G3DSA:3.30.2090.10 178 268 2.1E-277 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 SUPERFAMILY SSF82714 182 265 8.24E-11 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 Gene3D G3DSA:3.30.2090.10 723 814 2.1E-277 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 SUPERFAMILY SSF82714 724 812 8.76E-13 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 PRINTS PR00702 Acriflavin resistance protein family signature 355 376 1.3E-54 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 PRINTS PR00702 Acriflavin resistance protein family signature 383 407 1.3E-54 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 PRINTS PR00702 Acriflavin resistance protein family signature 436 459 1.3E-54 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 PRINTS PR00702 Acriflavin resistance protein family signature 328 351 1.3E-54 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 PRINTS PR00702 Acriflavin resistance protein family signature 461 484 1.3E-54 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 PRINTS PR00702 Acriflavin resistance protein family signature 539 556 1.3E-54 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.3E-54 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.3E-54 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 Gene3D G3DSA:3.30.70.1430 554 671 2.1E-277 T 12-10-2018 AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 Gene3D G3DSA:1.20.1640.10 503 1029 2.1E-277 T 12-10-2018 AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 SUPERFAMILY SSF82693 138 316 1.67E-12 T 12-10-2018 AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 SUPERFAMILY SSF82693 40 133 2.88E-21 T 12-10-2018 AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 Gene3D G3DSA:3.30.70.1320 134 324 2.1E-277 T 12-10-2018 AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 Gene3D G3DSA:3.30.70.1430 40 822 2.1E-277 T 12-10-2018 AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 SUPERFAMILY SSF82866 289 489 4.97E-44 T 12-10-2018 AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 SUPERFAMILY SSF82693 552 620 7.32E-8 T 12-10-2018 AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 Pfam PF00873 AcrB/AcrD/AcrF family 4 1032 4.9E-225 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 Gene3D G3DSA:3.30.70.1440 672 872 2.1E-277 T 12-10-2018 AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 SUPERFAMILY SSF82866 810 1033 3.14E-47 T 12-10-2018 AMJ96_CH03514 cbafffacb6354e10abcb0983f25d7ff4 1109 Gene3D G3DSA:1.20.1640.10 10 502 2.1E-277 T 12-10-2018 AMJ96_CH02152 91ddeedcb0b1203e1d5666566549aafa 701 SMART SM00490 506 588 3.4E-19 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH02152 91ddeedcb0b1203e1d5666566549aafa 701 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 41 664 9.4E-206 T 12-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 AMJ96_CH02152 91ddeedcb0b1203e1d5666566549aafa 701 SMART SM00487 270 460 4.7E-30 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMJ96_CH02152 91ddeedcb0b1203e1d5666566549aafa 701 SUPERFAMILY SSF52540 452 653 1.11E-38 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02152 91ddeedcb0b1203e1d5666566549aafa 701 Pfam PF00271 Helicase conserved C-terminal domain 481 587 5.4E-16 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH02152 91ddeedcb0b1203e1d5666566549aafa 701 Pfam PF00270 DEAD/DEAH box helicase 275 432 2.7E-18 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMJ96_CH02152 91ddeedcb0b1203e1d5666566549aafa 701 Pfam PF17191 RecG wedge domain 18 180 6.5E-9 T 12-10-2018 IPR033454 RecG, wedge domain AMJ96_CH02152 91ddeedcb0b1203e1d5666566549aafa 701 Gene3D G3DSA:3.40.50.300 223 450 1.8E-79 T 12-10-2018 AMJ96_CH02152 91ddeedcb0b1203e1d5666566549aafa 701 Gene3D G3DSA:2.40.50.140 55 152 1.3E-14 T 12-10-2018 AMJ96_CH02152 91ddeedcb0b1203e1d5666566549aafa 701 SUPERFAMILY SSF52540 188 453 1.18E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02152 91ddeedcb0b1203e1d5666566549aafa 701 SUPERFAMILY SSF50249 8 184 1.06E-28 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH02152 91ddeedcb0b1203e1d5666566549aafa 701 Gene3D G3DSA:3.40.50.300 458 629 3.1E-50 T 12-10-2018 AMJ96_PD00580 86cc114ce3a703b8271cb2004cd11f7a 53 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 2 41 8.5E-8 T 12-10-2018 IPR012933 HicA mRNA interferase family GO:0003729 AMJ96_CH01824 99b7c21923bd8c88878ed912253a5c72 186 SUPERFAMILY SSF55729 44 166 1.35E-14 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH01824 99b7c21923bd8c88878ed912253a5c72 186 Gene3D G3DSA:3.40.630.30 45 173 6.5E-12 T 12-10-2018 AMJ96_CH01131 94b9e9f3eebd96258ac0c1110b303bd8 138 Gene3D G3DSA:3.40.630.30 58 131 2.4E-13 T 12-10-2018 AMJ96_CH01131 94b9e9f3eebd96258ac0c1110b303bd8 138 SUPERFAMILY SSF55729 20 128 8.99E-14 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH04068 130551abff2c954ca205402bf246f716 437 SMART SM00116 223 272 2.8 T 12-10-2018 IPR000644 CBS domain AMJ96_CH04068 130551abff2c954ca205402bf246f716 437 SMART SM00116 289 337 0.061 T 12-10-2018 IPR000644 CBS domain AMJ96_CH04068 130551abff2c954ca205402bf246f716 437 SUPERFAMILY SSF56176 351 432 8.81E-21 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMJ96_CH04068 130551abff2c954ca205402bf246f716 437 SMART SM01091 352 430 1.9E-24 T 12-10-2018 IPR005170 Transporter-associated domain AMJ96_CH04068 130551abff2c954ca205402bf246f716 437 SUPERFAMILY SSF54631 210 354 4.39E-33 T 12-10-2018 AMJ96_CH04068 130551abff2c954ca205402bf246f716 437 Gene3D G3DSA:3.10.580.10 196 351 3.9E-50 T 12-10-2018 AMJ96_CH04068 130551abff2c954ca205402bf246f716 437 Pfam PF00571 CBS domain 222 272 0.0045 T 12-10-2018 IPR000644 CBS domain AMJ96_CH04068 130551abff2c954ca205402bf246f716 437 Pfam PF00571 CBS domain 292 337 2.0E-7 T 12-10-2018 IPR000644 CBS domain AMJ96_CH04068 130551abff2c954ca205402bf246f716 437 Gene3D G3DSA:3.30.465.10 352 428 5.5E-25 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMJ96_CH04068 130551abff2c954ca205402bf246f716 437 Pfam PF01595 Domain of unknown function DUF21 21 195 3.7E-40 T 12-10-2018 IPR002550 CNNM, transmembrane domain AMJ96_CH04068 130551abff2c954ca205402bf246f716 437 Pfam PF03471 Transporter associated domain 353 428 6.4E-18 T 12-10-2018 IPR005170 Transporter-associated domain AMJ96_PC00258 831670c3c74b3d72bf9e85153712d462 352 SUPERFAMILY SSF50331 236 351 6.8E-25 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_PC00258 831670c3c74b3d72bf9e85153712d462 352 SMART SM00382 28 219 4.7E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00258 831670c3c74b3d72bf9e85153712d462 352 Pfam PF08402 TOBE domain 275 344 4.2E-8 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_PC00258 831670c3c74b3d72bf9e85153712d462 352 SUPERFAMILY SSF52540 4 243 1.64E-83 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00258 831670c3c74b3d72bf9e85153712d462 352 Pfam PF00005 ABC transporter 19 161 6.2E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00258 831670c3c74b3d72bf9e85153712d462 352 Gene3D G3DSA:2.40.50.940 222 345 4.3E-28 T 12-10-2018 AMJ96_PC00258 831670c3c74b3d72bf9e85153712d462 352 Gene3D G3DSA:3.40.50.300 3 221 1.1E-64 T 12-10-2018 AMJ96_PC00258 831670c3c74b3d72bf9e85153712d462 352 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00258 831670c3c74b3d72bf9e85153712d462 352 Gene3D G3DSA:2.40.50.140 282 336 4.3E-28 T 12-10-2018 AMJ96_CH01385 82863352c13de14e4022150d77cfeed1 305 SUPERFAMILY SSF51658 4 280 1.38E-49 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_CH01385 82863352c13de14e4022150d77cfeed1 305 TIGRFAM TIGR04379 myo_inos_iolE: myo-inosose-2 dehydratase 3 289 1.2E-111 T 12-10-2018 IPR030823 IolE/MocC family KEGG: 00562+4.2.1.44 AMJ96_CH01385 82863352c13de14e4022150d77cfeed1 305 Pfam PF01261 Xylose isomerase-like TIM barrel 31 223 1.2E-18 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMJ96_CH01385 82863352c13de14e4022150d77cfeed1 305 Gene3D G3DSA:3.20.20.150 1 291 2.6E-63 T 12-10-2018 AMJ96_CH01770 d05cd5ecf1dcc65018a1fbbd2d480ec5 551 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 252 266 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AMJ96_CH01770 d05cd5ecf1dcc65018a1fbbd2d480ec5 551 Gene3D G3DSA:3.50.50.60 4 518 7.6E-168 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01770 d05cd5ecf1dcc65018a1fbbd2d480ec5 551 SUPERFAMILY SSF51905 2 527 3.52E-82 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01770 d05cd5ecf1dcc65018a1fbbd2d480ec5 551 Gene3D G3DSA:3.30.560.10 41 465 7.6E-168 T 12-10-2018 AMJ96_CH01770 d05cd5ecf1dcc65018a1fbbd2d480ec5 551 Pfam PF00732 GMC oxidoreductase 3 293 1.3E-86 T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AMJ96_CH01770 d05cd5ecf1dcc65018a1fbbd2d480ec5 551 Pfam PF05199 GMC oxidoreductase 384 519 4.5E-39 T 12-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 AMJ96_CH01770 d05cd5ecf1dcc65018a1fbbd2d480ec5 551 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 79 102 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AMJ96_CH01770 d05cd5ecf1dcc65018a1fbbd2d480ec5 551 PIRSF PIRSF000137 1 529 3.1E-141 T 12-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AMJ96_CH01770 d05cd5ecf1dcc65018a1fbbd2d480ec5 551 SUPERFAMILY SSF54373 288 470 9.81E-57 T 12-10-2018 AMJ96_CH01573 a9090293d7b6259d4d9debf2ab0b647f 730 Pfam PF07238 PilZ domain 567 669 2.6E-8 T 12-10-2018 IPR009875 PilZ domain GO:0035438 AMJ96_CH01573 a9090293d7b6259d4d9debf2ab0b647f 730 Pfam PF00535 Glycosyl transferase family 2 131 318 2.5E-41 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_CH01573 a9090293d7b6259d4d9debf2ab0b647f 730 PRINTS PR01439 Cellulose synthase subunit A signature 467 486 4.7E-15 T 12-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 AMJ96_CH01573 a9090293d7b6259d4d9debf2ab0b647f 730 PRINTS PR01439 Cellulose synthase subunit A signature 54 74 4.7E-15 T 12-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 AMJ96_CH01573 a9090293d7b6259d4d9debf2ab0b647f 730 PRINTS PR01439 Cellulose synthase subunit A signature 137 156 4.7E-15 T 12-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 AMJ96_CH01573 a9090293d7b6259d4d9debf2ab0b647f 730 PRINTS PR01439 Cellulose synthase subunit A signature 539 560 4.7E-15 T 12-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 AMJ96_CH01573 a9090293d7b6259d4d9debf2ab0b647f 730 PRINTS PR01439 Cellulose synthase subunit A signature 398 424 4.7E-15 T 12-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 AMJ96_CH01573 a9090293d7b6259d4d9debf2ab0b647f 730 Gene3D G3DSA:3.90.550.10 118 358 1.2E-87 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH01573 a9090293d7b6259d4d9debf2ab0b647f 730 Pfam PF03552 Cellulose synthase 326 453 6.9E-7 T 12-10-2018 IPR005150 Cellulose synthase GO:0016020|GO:0016760|GO:0030244 AMJ96_CH01573 a9090293d7b6259d4d9debf2ab0b647f 730 TIGRFAM TIGR03030 CelA: cellulose synthase catalytic subunit (UDP-forming) 3 708 8.2E-281 T 12-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 AMJ96_CH01573 a9090293d7b6259d4d9debf2ab0b647f 730 SUPERFAMILY SSF53448 114 424 1.22E-46 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH04345 39f367faf8008cbbe34c1fa9dd02dbff 139 Gene3D G3DSA:3.10.180.10 16 139 7.1E-26 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH04345 39f367faf8008cbbe34c1fa9dd02dbff 139 SUPERFAMILY SSF54593 18 137 2.28E-33 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH04345 39f367faf8008cbbe34c1fa9dd02dbff 139 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 23 132 2.0E-14 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH03962 e0bcd9540ae8bda1082e6c21399cbf25 371 Pfam PF00005 ABC transporter 19 161 3.1E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03962 e0bcd9540ae8bda1082e6c21399cbf25 371 SUPERFAMILY SSF52540 3 243 3.5E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03962 e0bcd9540ae8bda1082e6c21399cbf25 371 Gene3D G3DSA:3.40.50.300 2 238 1.6E-76 T 12-10-2018 AMJ96_CH03962 e0bcd9540ae8bda1082e6c21399cbf25 371 SUPERFAMILY SSF50331 236 370 6.32E-25 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH03962 e0bcd9540ae8bda1082e6c21399cbf25 371 SMART SM00382 28 210 6.6E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03962 e0bcd9540ae8bda1082e6c21399cbf25 371 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03962 e0bcd9540ae8bda1082e6c21399cbf25 371 Gene3D G3DSA:2.40.50.140 289 355 2.2E-20 T 12-10-2018 AMJ96_CH03962 e0bcd9540ae8bda1082e6c21399cbf25 371 Gene3D G3DSA:2.40.50.100 239 367 2.2E-20 T 12-10-2018 AMJ96_CH00431 b52e85cfe79093f9943c9e0eae70d3bd 171 Pfam PF01327 Polypeptide deformylase 4 155 4.2E-56 T 12-10-2018 IPR023635 Peptide deformylase AMJ96_CH00431 b52e85cfe79093f9943c9e0eae70d3bd 171 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 161 2.7E-59 T 12-10-2018 IPR023635 Peptide deformylase AMJ96_CH00431 b52e85cfe79093f9943c9e0eae70d3bd 171 PRINTS PR01576 Peptide deformylase signature 33 62 6.5E-39 T 12-10-2018 IPR023635 Peptide deformylase AMJ96_CH00431 b52e85cfe79093f9943c9e0eae70d3bd 171 PRINTS PR01576 Peptide deformylase signature 92 103 6.5E-39 T 12-10-2018 IPR023635 Peptide deformylase AMJ96_CH00431 b52e85cfe79093f9943c9e0eae70d3bd 171 PRINTS PR01576 Peptide deformylase signature 104 122 6.5E-39 T 12-10-2018 IPR023635 Peptide deformylase AMJ96_CH00431 b52e85cfe79093f9943c9e0eae70d3bd 171 PRINTS PR01576 Peptide deformylase signature 123 152 6.5E-39 T 12-10-2018 IPR023635 Peptide deformylase AMJ96_CH00431 b52e85cfe79093f9943c9e0eae70d3bd 171 Hamap MF_00163 Peptide deformylase [def]. 2 165 33.689 T 12-10-2018 IPR023635 Peptide deformylase AMJ96_CH00431 b52e85cfe79093f9943c9e0eae70d3bd 171 SUPERFAMILY SSF56420 1 164 1.83E-65 T 12-10-2018 IPR036821 Peptide deformylase superfamily AMJ96_CH00431 b52e85cfe79093f9943c9e0eae70d3bd 171 Gene3D G3DSA:3.90.45.10 1 170 1.4E-66 T 12-10-2018 IPR036821 Peptide deformylase superfamily AMJ96_CH00431 b52e85cfe79093f9943c9e0eae70d3bd 171 PIRSF PIRSF004749 1 170 1.5E-59 T 12-10-2018 IPR023635 Peptide deformylase AMJ96_CH00338 0bddf6f759b144da71553218956c3e06 510 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 8 500 2.5E-156 T 12-10-2018 IPR004482 Mg chelatase-related protein AMJ96_CH00338 0bddf6f759b144da71553218956c3e06 510 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 402 500 1.1E-29 T 12-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain AMJ96_CH00338 0bddf6f759b144da71553218956c3e06 510 Pfam PF13541 Subunit ChlI of Mg-chelatase 20 140 4.3E-39 T 12-10-2018 AMJ96_CH00338 0bddf6f759b144da71553218956c3e06 510 Gene3D G3DSA:3.30.230.10 5 158 5.4E-8 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMJ96_CH00338 0bddf6f759b144da71553218956c3e06 510 Gene3D G3DSA:3.40.50.300 189 502 1.6E-54 T 12-10-2018 AMJ96_CH00338 0bddf6f759b144da71553218956c3e06 510 Pfam PF01078 Magnesium chelatase, subunit ChlI 189 394 1.4E-93 T 12-10-2018 IPR000523 Magnesium chelatase ChlI domain AMJ96_CH00338 0bddf6f759b144da71553218956c3e06 510 SUPERFAMILY SSF54211 7 169 1.29E-31 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_CH00338 0bddf6f759b144da71553218956c3e06 510 SUPERFAMILY SSF52540 189 501 1.37E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00338 0bddf6f759b144da71553218956c3e06 510 SMART SM00382 209 391 7.3E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00956 d3d3161e6331657ab360798ee6715bc7 80 Pfam PF08972 Domain of unknown function (DUF1902) 6 71 1.1E-20 T 12-10-2018 IPR015066 Domain of unknown function DUF1902 AMJ96_CH00956 d3d3161e6331657ab360798ee6715bc7 80 SUPERFAMILY SSF143100 5 67 1.22E-12 T 12-10-2018 IPR035069 TTHA1013/TTHA0281-like AMJ96_CH00956 d3d3161e6331657ab360798ee6715bc7 80 Gene3D G3DSA:3.30.2390.10 4 75 1.7E-22 T 12-10-2018 AMJ96_CH01920 9a6d9e88e42d05aa1d22e98ca763a588 53 Gene3D G3DSA:1.20.5.320 17 48 6.0E-14 T 12-10-2018 AMJ96_CH01920 9a6d9e88e42d05aa1d22e98ca763a588 53 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 3 46 1.2E-14 T 12-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMJ96_CH01920 9a6d9e88e42d05aa1d22e98ca763a588 53 SUPERFAMILY SSF48179 2 47 9.69E-15 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_CH04232 623fc9ebe99d04d6d073a243e99dd1b0 327 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 6 326 4.9E-127 T 12-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 AMJ96_CH04232 623fc9ebe99d04d6d073a243e99dd1b0 327 Gene3D G3DSA:3.90.25.10 175 308 6.5E-125 T 12-10-2018 AMJ96_CH04232 623fc9ebe99d04d6d073a243e99dd1b0 327 Gene3D G3DSA:3.40.50.720 6 254 6.5E-125 T 12-10-2018 AMJ96_CH04232 623fc9ebe99d04d6d073a243e99dd1b0 327 SUPERFAMILY SSF51735 1 322 1.55E-91 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH04232 623fc9ebe99d04d6d073a243e99dd1b0 327 Pfam PF16363 GDP-mannose 4,6 dehydratase 7 315 4.8E-54 T 12-10-2018 IPR016040 NAD(P)-binding domain AMJ96_CH00899 5598a5b7bd4f9aae9eaf36de03e3d8a4 446 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 39 412 2.4E-119 T 12-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 AMJ96_CH00899 5598a5b7bd4f9aae9eaf36de03e3d8a4 446 Pfam PF01566 Natural resistance-associated macrophage protein 60 416 2.2E-132 T 12-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 AMJ96_CH00899 5598a5b7bd4f9aae9eaf36de03e3d8a4 446 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 26 444 39.156 T 12-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 AMJ96_CH00899 5598a5b7bd4f9aae9eaf36de03e3d8a4 446 PRINTS PR00447 Natural resistance-associated macrophage protein signature 224 247 3.5E-63 T 12-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 AMJ96_CH00899 5598a5b7bd4f9aae9eaf36de03e3d8a4 446 PRINTS PR00447 Natural resistance-associated macrophage protein signature 172 193 3.5E-63 T 12-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 AMJ96_CH00899 5598a5b7bd4f9aae9eaf36de03e3d8a4 446 PRINTS PR00447 Natural resistance-associated macrophage protein signature 328 347 3.5E-63 T 12-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 AMJ96_CH00899 5598a5b7bd4f9aae9eaf36de03e3d8a4 446 PRINTS PR00447 Natural resistance-associated macrophage protein signature 119 145 3.5E-63 T 12-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 AMJ96_CH00899 5598a5b7bd4f9aae9eaf36de03e3d8a4 446 PRINTS PR00447 Natural resistance-associated macrophage protein signature 356 373 3.5E-63 T 12-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 AMJ96_CH00899 5598a5b7bd4f9aae9eaf36de03e3d8a4 446 PRINTS PR00447 Natural resistance-associated macrophage protein signature 388 407 3.5E-63 T 12-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 AMJ96_CH00899 5598a5b7bd4f9aae9eaf36de03e3d8a4 446 PRINTS PR00447 Natural resistance-associated macrophage protein signature 147 166 3.5E-63 T 12-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 AMJ96_CH00076 c2925878b8a4d36b95c1c235696f665f 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 13 52 4.2E-14 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH00076 c2925878b8a4d36b95c1c235696f665f 342 Gene3D G3DSA:3.40.50.2300 79 313 1.9E-49 T 12-10-2018 AMJ96_CH00076 c2925878b8a4d36b95c1c235696f665f 342 SUPERFAMILY SSF53822 78 332 1.26E-42 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH00076 c2925878b8a4d36b95c1c235696f665f 342 SMART SM00354 8 72 5.4E-7 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH00076 c2925878b8a4d36b95c1c235696f665f 342 Gene3D G3DSA:3.40.50.2300 166 297 1.9E-49 T 12-10-2018 AMJ96_CH00076 c2925878b8a4d36b95c1c235696f665f 342 Pfam PF13377 Periplasmic binding protein-like domain 176 336 3.1E-29 T 12-10-2018 AMJ96_CH00076 c2925878b8a4d36b95c1c235696f665f 342 Gene3D G3DSA:1.10.260.40 1 64 7.5E-16 T 12-10-2018 AMJ96_CH00076 c2925878b8a4d36b95c1c235696f665f 342 SUPERFAMILY SSF47413 8 62 7.04E-13 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH04069 dcd584ad199e3117bb67a4bc81ccc7ce 377 Gene3D G3DSA:3.40.50.1970 2 183 1.7E-63 T 12-10-2018 AMJ96_CH04069 dcd584ad199e3117bb67a4bc81ccc7ce 377 SUPERFAMILY SSF56796 12 373 9.03E-109 T 12-10-2018 AMJ96_CH04069 dcd584ad199e3117bb67a4bc81ccc7ce 377 Pfam PF01761 3-dehydroquinate synthase 77 341 2.5E-99 T 12-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AMJ96_CH04069 dcd584ad199e3117bb67a4bc81ccc7ce 377 Gene3D G3DSA:1.20.1090.10 184 376 1.6E-56 T 12-10-2018 AMJ96_CH04069 dcd584ad199e3117bb67a4bc81ccc7ce 377 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 10 372 68.105 T 12-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AMJ96_CH04069 dcd584ad199e3117bb67a4bc81ccc7ce 377 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 22 370 3.5E-108 T 12-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AMJ96_CH04069 dcd584ad199e3117bb67a4bc81ccc7ce 377 PIRSF PIRSF001455 24 375 5.4E-100 T 12-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AMJ96_CH02737 b40b7718fca22978db0e9c6a200240a6 213 Pfam PF01872 RibD C-terminal domain 9 207 5.6E-18 T 12-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMJ96_CH02737 b40b7718fca22978db0e9c6a200240a6 213 SUPERFAMILY SSF53597 9 202 6.49E-25 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMJ96_CH02737 b40b7718fca22978db0e9c6a200240a6 213 Gene3D G3DSA:3.40.430.10 1 212 7.0E-46 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMJ96_CH02047 11db5a2fc0f69ed0214062d322bb4836 441 Gene3D G3DSA:3.40.50.11060 20 142 1.2E-34 T 12-10-2018 AMJ96_CH02047 11db5a2fc0f69ed0214062d322bb4836 441 Gene3D G3DSA:3.40.50.300 203 377 6.0E-41 T 12-10-2018 AMJ96_CH02047 11db5a2fc0f69ed0214062d322bb4836 441 PIRSF PIRSF006809 2 431 6.6E-146 T 12-10-2018 IPR016496 GTPase HflX GO:0005525 AMJ96_CH02047 11db5a2fc0f69ed0214062d322bb4836 441 Pfam PF01926 50S ribosome-binding GTPase 205 327 6.2E-19 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 AMJ96_CH02047 11db5a2fc0f69ed0214062d322bb4836 441 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 205 225 6.0E-7 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 AMJ96_CH02047 11db5a2fc0f69ed0214062d322bb4836 441 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 272 290 6.0E-7 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 AMJ96_CH02047 11db5a2fc0f69ed0214062d322bb4836 441 Pfam PF13167 GTP-binding GTPase N-terminal 29 115 2.3E-27 T 12-10-2018 IPR025121 GTPase HflX, N-terminal AMJ96_CH02047 11db5a2fc0f69ed0214062d322bb4836 441 SUPERFAMILY SSF52540 203 378 3.88E-41 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02047 11db5a2fc0f69ed0214062d322bb4836 441 Pfam PF16360 GTP-binding GTPase Middle Region 118 197 2.5E-28 T 12-10-2018 IPR032305 GTP-binding protein, middle domain AMJ96_CH02047 11db5a2fc0f69ed0214062d322bb4836 441 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 24 370 5.5E-136 T 12-10-2018 IPR016496 GTPase HflX GO:0005525 AMJ96_CH02047 11db5a2fc0f69ed0214062d322bb4836 441 Hamap MF_00900 GTPase HflX [hflX]. 31 400 47.713 T 12-10-2018 IPR016496 GTPase HflX GO:0005525 AMJ96_CH02465 eefeb804f4563f92a064d078c0c63470 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 257 3.6E-62 T 12-10-2018 AMJ96_CH02465 eefeb804f4563f92a064d078c0c63470 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 8.1E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02465 eefeb804f4563f92a064d078c0c63470 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 8.1E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02465 eefeb804f4563f92a064d078c0c63470 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 8.1E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02465 eefeb804f4563f92a064d078c0c63470 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 221 241 8.1E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02465 eefeb804f4563f92a064d078c0c63470 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 8.1E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02465 eefeb804f4563f92a064d078c0c63470 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 8.1E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02465 eefeb804f4563f92a064d078c0c63470 260 Gene3D G3DSA:3.40.50.720 6 259 9.4E-87 T 12-10-2018 AMJ96_CH02465 eefeb804f4563f92a064d078c0c63470 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 8.3E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02465 eefeb804f4563f92a064d078c0c63470 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 8.3E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02465 eefeb804f4563f92a064d078c0c63470 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 8.3E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02465 eefeb804f4563f92a064d078c0c63470 260 SUPERFAMILY SSF51735 6 259 4.35E-82 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02465 eefeb804f4563f92a064d078c0c63470 260 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH01034 7200d3b60c56104c9a70cfbca0501cfe 306 Gene3D G3DSA:3.40.91.100 130 294 2.3E-11 T 12-10-2018 AMJ96_CH01034 7200d3b60c56104c9a70cfbca0501cfe 306 SUPERFAMILY SSF52980 163 283 6.43E-15 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMJ96_CH01034 7200d3b60c56104c9a70cfbca0501cfe 306 Pfam PF14338 Mrr N-terminal domain 6 89 7.4E-26 T 12-10-2018 IPR025745 Restriction system protein Mrr-like N-terminal domain AMJ96_CH01034 7200d3b60c56104c9a70cfbca0501cfe 306 Pfam PF04471 Restriction endonuclease 161 280 2.8E-34 T 12-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 AMJ96_CH00017 1d843ce0e00a2dc263dc5a99e6ed1617 425 SUPERFAMILY SSF53474 90 404 4.62E-26 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH00017 1d843ce0e00a2dc263dc5a99e6ed1617 425 TIGRFAM TIGR01849 PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular 2 405 1.0E-201 T 12-10-2018 IPR010915 Polyhydroxyalkanoate depolymerase AMJ96_CH00017 1d843ce0e00a2dc263dc5a99e6ed1617 425 PIRSF PIRSF020818 1 418 1.2E-198 T 12-10-2018 IPR010915 Polyhydroxyalkanoate depolymerase AMJ96_CH00017 1d843ce0e00a2dc263dc5a99e6ed1617 425 Pfam PF06850 PHB de-polymerase C-terminus 206 406 3.1E-102 T 12-10-2018 IPR009656 PHB de-polymerase, C-terminal AMJ96_CH00751 67eeda5bb069b326fd743aa34db62367 843 SUPERFAMILY SSF58104 549 832 3.79E-63 T 12-10-2018 AMJ96_CH00751 67eeda5bb069b326fd743aa34db62367 843 SUPERFAMILY SSF158472 450 497 1.57E-9 T 12-10-2018 AMJ96_CH00751 67eeda5bb069b326fd743aa34db62367 843 Pfam PF00672 HAMP domain 450 495 1.3E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH00751 67eeda5bb069b326fd743aa34db62367 843 SMART SM00304 529 581 4.4 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH00751 67eeda5bb069b326fd743aa34db62367 843 SMART SM00304 448 501 3.2E-8 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH00751 67eeda5bb069b326fd743aa34db62367 843 Gene3D G3DSA:1.10.287.950 530 831 3.5E-75 T 12-10-2018 AMJ96_CH00751 67eeda5bb069b326fd743aa34db62367 843 Gene3D G3DSA:1.10.8.500 449 500 3.3E-14 T 12-10-2018 AMJ96_CH00751 67eeda5bb069b326fd743aa34db62367 843 SMART SM00283 582 829 4.5E-102 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH00751 67eeda5bb069b326fd743aa34db62367 843 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 642 797 2.5E-47 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH01676 022b3e267c584e35c58e43a09d357410 552 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 188 282 1.6E-16 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMJ96_CH01676 022b3e267c584e35c58e43a09d357410 552 Gene3D G3DSA:2.40.110.20 138 291 6.9E-57 T 12-10-2018 AMJ96_CH01676 022b3e267c584e35c58e43a09d357410 552 Gene3D G3DSA:1.20.140.10 293 448 9.9E-40 T 12-10-2018 AMJ96_CH01676 022b3e267c584e35c58e43a09d357410 552 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 293 446 5.3E-30 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMJ96_CH01676 022b3e267c584e35c58e43a09d357410 552 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 406 425 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMJ96_CH01676 022b3e267c584e35c58e43a09d357410 552 SUPERFAMILY SSF56645 55 301 1.34E-32 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMJ96_CH01676 022b3e267c584e35c58e43a09d357410 552 SUPERFAMILY SSF47203 297 449 3.7E-41 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMJ96_CH01306 e10998b8f5e7d7fb2fd0b91e73a5f0fc 724 Pfam PF00912 Transglycosylase 127 293 6.1E-58 T 12-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH01306 e10998b8f5e7d7fb2fd0b91e73a5f0fc 724 SUPERFAMILY SSF53955 110 315 1.94E-68 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily AMJ96_CH01306 e10998b8f5e7d7fb2fd0b91e73a5f0fc 724 Pfam PF00905 Penicillin binding protein transpeptidase domain 381 648 3.1E-30 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMJ96_CH01306 e10998b8f5e7d7fb2fd0b91e73a5f0fc 724 SUPERFAMILY SSF56601 275 666 6.52E-111 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMJ96_CH01306 e10998b8f5e7d7fb2fd0b91e73a5f0fc 724 Gene3D G3DSA:3.40.710.10 317 682 6.7E-100 T 12-10-2018 AMJ96_CH01306 e10998b8f5e7d7fb2fd0b91e73a5f0fc 724 Gene3D G3DSA:1.10.3810.10 111 309 2.3E-67 T 12-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH01306 e10998b8f5e7d7fb2fd0b91e73a5f0fc 724 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 131 653 2.0E-175 T 12-10-2018 AMJ96_CH01736 de794f8dd25d39dfb9ab581ded3a4564 446 Pfam PF00344 SecY translocase 81 418 3.5E-116 T 12-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMJ96_CH01736 de794f8dd25d39dfb9ab581ded3a4564 446 PIRSF PIRSF004557 2 442 1.1E-120 T 12-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMJ96_CH01736 de794f8dd25d39dfb9ab581ded3a4564 446 SUPERFAMILY SSF103491 15 425 1.96E-130 T 12-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMJ96_CH01736 de794f8dd25d39dfb9ab581ded3a4564 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 273 292 3.7E-97 T 12-10-2018 AMJ96_CH01736 de794f8dd25d39dfb9ab581ded3a4564 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 79 99 3.7E-97 T 12-10-2018 AMJ96_CH01736 de794f8dd25d39dfb9ab581ded3a4564 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 371 389 3.7E-97 T 12-10-2018 AMJ96_CH01736 de794f8dd25d39dfb9ab581ded3a4564 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 181 204 3.7E-97 T 12-10-2018 AMJ96_CH01736 de794f8dd25d39dfb9ab581ded3a4564 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 120 143 3.7E-97 T 12-10-2018 AMJ96_CH01736 de794f8dd25d39dfb9ab581ded3a4564 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 155 180 3.7E-97 T 12-10-2018 AMJ96_CH01736 de794f8dd25d39dfb9ab581ded3a4564 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 27 45 3.7E-97 T 12-10-2018 AMJ96_CH01736 de794f8dd25d39dfb9ab581ded3a4564 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 403 421 3.7E-97 T 12-10-2018 AMJ96_CH01736 de794f8dd25d39dfb9ab581ded3a4564 446 PRINTS PR00303 Preprotein translocase SecY subunit signature 316 338 3.7E-97 T 12-10-2018 AMJ96_CH01736 de794f8dd25d39dfb9ab581ded3a4564 446 ProSitePatterns PS00756 Protein secY signature 2. 174 191 - T 12-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMJ96_CH01736 de794f8dd25d39dfb9ab581ded3a4564 446 Hamap MF_01465 Protein translocase subunit SecY [secY]. 14 434 29.454 T 12-10-2018 IPR026593 Protein translocase subunit SecY AMJ96_CH01736 de794f8dd25d39dfb9ab581ded3a4564 446 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 24 430 3.3E-130 T 12-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMJ96_CH01736 de794f8dd25d39dfb9ab581ded3a4564 446 Gene3D G3DSA:1.10.3370.10 12 430 1.2E-160 T 12-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMJ96_PD00279 eec40fee50cacb91d109cc31254c391c 393 Gene3D G3DSA:3.90.230.10 159 391 3.6E-43 T 12-10-2018 AMJ96_PD00279 eec40fee50cacb91d109cc31254c391c 393 Pfam PF00557 Metallopeptidase family M24 168 376 2.5E-33 T 12-10-2018 IPR000994 Peptidase M24 AMJ96_PD00279 eec40fee50cacb91d109cc31254c391c 393 TIGRFAM TIGR02993 ectoine_eutD: ectoine utilization protein EutD 3 393 8.4E-249 T 12-10-2018 IPR014335 Ectoine utilization protein EutD KEGG: 00260+3.5.4.44|MetaCyc: PWY-7855 AMJ96_PD00279 eec40fee50cacb91d109cc31254c391c 393 SUPERFAMILY SSF55920 160 392 6.41E-57 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like AMJ96_PD00279 eec40fee50cacb91d109cc31254c391c 393 SUPERFAMILY SSF53092 1 158 6.8E-43 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMJ96_PD00279 eec40fee50cacb91d109cc31254c391c 393 Pfam PF01321 Creatinase/Prolidase N-terminal domain 16 160 2.1E-23 T 12-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 AMJ96_PD00279 eec40fee50cacb91d109cc31254c391c 393 Gene3D G3DSA:3.40.350.10 2 158 1.1E-36 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMJ96_CH02947 f20fa47d2aded8c0a49c9be02095be14 199 Gene3D G3DSA:3.90.330.10 1 191 6.0E-84 T 12-10-2018 IPR036648 Nitrile hydratase alpha /Thiocyanate hydrolase gamma superfamily GO:0003824|GO:0006807|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 AMJ96_CH02947 f20fa47d2aded8c0a49c9be02095be14 199 PIRSF PIRSF001426 1 190 3.1E-93 T 12-10-2018 IPR023900 Nitrile hydratase alpha subunit /Thiocyanate hydrolase gamma subunit KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 AMJ96_CH02947 f20fa47d2aded8c0a49c9be02095be14 199 ProDom PD007559 HYDRATASE NITRILE ALPHA SUBUNIT LYASE CHAIN METAL-BINDING DIRECT SEQUENCING NITRILASE 3 178 2.0E-84 T 12-10-2018 IPR004232 Nitrile hydratase alpha /Thiocyanate hydrolase gamma GO:0003824|GO:0006807|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 AMJ96_CH02947 f20fa47d2aded8c0a49c9be02095be14 199 Pfam PF02979 Nitrile hydratase, alpha chain 2 182 8.7E-82 T 12-10-2018 IPR004232 Nitrile hydratase alpha /Thiocyanate hydrolase gamma GO:0003824|GO:0006807|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 AMJ96_CH02947 f20fa47d2aded8c0a49c9be02095be14 199 TIGRFAM TIGR01323 nitrile_alph: nitrile hydratase, alpha subunit 2 185 9.2E-90 T 12-10-2018 IPR018141 Nitrile hydratase, alpha subunit GO:0006807|GO:0018822|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 AMJ96_CH02947 f20fa47d2aded8c0a49c9be02095be14 199 SUPERFAMILY SSF56209 2 183 2.49E-80 T 12-10-2018 IPR036648 Nitrile hydratase alpha /Thiocyanate hydrolase gamma superfamily GO:0003824|GO:0006807|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 AMJ96_PD00257 1995ec5996d780dddd563cb43ad51012 169 Pfam PF00583 Acetyltransferase (GNAT) family 35 133 3.5E-5 T 12-10-2018 IPR000182 GNAT domain AMJ96_PD00257 1995ec5996d780dddd563cb43ad51012 169 Gene3D G3DSA:3.40.630.30 1 159 3.7E-19 T 12-10-2018 AMJ96_PD00257 1995ec5996d780dddd563cb43ad51012 169 SUPERFAMILY SSF55729 1 153 1.76E-20 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH01229 3d800dcaa0d63021b73e3945d2eda37a 426 SUPERFAMILY SSF54631 201 333 1.34E-24 T 12-10-2018 AMJ96_CH01229 3d800dcaa0d63021b73e3945d2eda37a 426 Pfam PF01595 Domain of unknown function DUF21 7 198 6.7E-45 T 12-10-2018 IPR002550 CNNM, transmembrane domain AMJ96_CH01229 3d800dcaa0d63021b73e3945d2eda37a 426 SMART SM00116 222 271 13.0 T 12-10-2018 IPR000644 CBS domain AMJ96_CH01229 3d800dcaa0d63021b73e3945d2eda37a 426 SMART SM00116 284 332 0.24 T 12-10-2018 IPR000644 CBS domain AMJ96_CH01229 3d800dcaa0d63021b73e3945d2eda37a 426 Gene3D G3DSA:3.10.580.10 194 344 4.3E-37 T 12-10-2018 AMJ96_CH01229 3d800dcaa0d63021b73e3945d2eda37a 426 Pfam PF03471 Transporter associated domain 347 424 9.3E-24 T 12-10-2018 IPR005170 Transporter-associated domain AMJ96_CH01229 3d800dcaa0d63021b73e3945d2eda37a 426 SMART SM01091 346 425 3.2E-31 T 12-10-2018 IPR005170 Transporter-associated domain AMJ96_CH01229 3d800dcaa0d63021b73e3945d2eda37a 426 Gene3D G3DSA:3.30.465.10 345 424 2.3E-28 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMJ96_CH01229 3d800dcaa0d63021b73e3945d2eda37a 426 SUPERFAMILY SSF56176 345 423 1.42E-24 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMJ96_CH01229 3d800dcaa0d63021b73e3945d2eda37a 426 Pfam PF00571 CBS domain 215 267 0.0013 T 12-10-2018 IPR000644 CBS domain AMJ96_CH01229 3d800dcaa0d63021b73e3945d2eda37a 426 Pfam PF00571 CBS domain 281 332 4.5E-6 T 12-10-2018 IPR000644 CBS domain AMJ96_CH03582 30929b24ff685d937e9ae4bedf5578c0 178 SUPERFAMILY SSF69118 1 169 5.76E-19 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_CH03582 30929b24ff685d937e9ae4bedf5578c0 178 Gene3D G3DSA:1.20.1290.10 14 175 1.3E-11 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_CH00563 971b333c9864a91ea7cfc99deca217c2 166 Pfam PF02082 Transcriptional regulator 1 83 1.3E-21 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type AMJ96_CH00563 971b333c9864a91ea7cfc99deca217c2 166 SUPERFAMILY SSF46785 2 137 1.73E-27 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00563 971b333c9864a91ea7cfc99deca217c2 166 Gene3D G3DSA:1.10.10.10 1 145 2.7E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00563 971b333c9864a91ea7cfc99deca217c2 166 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 137 2.5E-24 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type AMJ96_CH00563 971b333c9864a91ea7cfc99deca217c2 166 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 12-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site AMJ96_CH02136 a4e0c90252e4ee504cb808eedeacb510 270 Pfam PF00970 Oxidoreductase FAD-binding domain 32 112 1.7E-7 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 AMJ96_CH02136 a4e0c90252e4ee504cb808eedeacb510 270 Gene3D G3DSA:2.40.30.10 11 110 2.1E-27 T 12-10-2018 AMJ96_CH02136 a4e0c90252e4ee504cb808eedeacb510 270 SUPERFAMILY SSF63380 18 113 1.74E-24 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMJ96_CH02136 a4e0c90252e4ee504cb808eedeacb510 270 Gene3D G3DSA:3.40.50.80 114 267 1.8E-35 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMJ96_CH02136 a4e0c90252e4ee504cb808eedeacb510 270 SUPERFAMILY SSF52343 117 268 7.73E-32 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMJ96_PD00154 e98ee349763c49e7df9768e59fd7f64d 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 28 90 2.5E-19 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00154 e98ee349763c49e7df9768e59fd7f64d 254 Gene3D G3DSA:1.10.10.10 22 91 1.9E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00154 e98ee349763c49e7df9768e59fd7f64d 254 SMART SM00895 113 239 8.4E-17 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00154 e98ee349763c49e7df9768e59fd7f64d 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 64 80 1.8E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00154 e98ee349763c49e7df9768e59fd7f64d 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 64 1.8E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00154 e98ee349763c49e7df9768e59fd7f64d 254 SMART SM00345 31 90 2.7E-19 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00154 e98ee349763c49e7df9768e59fd7f64d 254 SUPERFAMILY SSF46785 23 94 1.76E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00154 e98ee349763c49e7df9768e59fd7f64d 254 SUPERFAMILY SSF48008 110 246 3.66E-25 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00154 e98ee349763c49e7df9768e59fd7f64d 254 Gene3D G3DSA:1.20.120.530 107 248 1.4E-26 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00154 e98ee349763c49e7df9768e59fd7f64d 254 Pfam PF07729 FCD domain 115 238 1.6E-22 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH03623 ea88c449d5eb1b8a20dc20962508eba7 167 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 12 152 5.4E-73 T 12-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03623 ea88c449d5eb1b8a20dc20962508eba7 167 SUPERFAMILY SSF56770 11 154 4.06E-65 T 12-10-2018 AMJ96_CH03623 ea88c449d5eb1b8a20dc20962508eba7 167 Gene3D G3DSA:3.40.50.12280 3 163 9.6E-73 T 12-10-2018 AMJ96_CH03623 ea88c449d5eb1b8a20dc20962508eba7 167 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 2 151 43.116 T 12-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03623 ea88c449d5eb1b8a20dc20962508eba7 167 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 38 143 1.5E-23 T 12-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_PC00437 f0805ff2b1151692b802793a922a2bea 297 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 284 1.3E-20 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_PC00437 f0805ff2b1151692b802793a922a2bea 297 Gene3D G3DSA:3.50.50.60 114 224 4.4E-82 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00437 f0805ff2b1151692b802793a922a2bea 297 SUPERFAMILY SSF51905 1 292 5.77E-31 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00437 f0805ff2b1151692b802793a922a2bea 297 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 101 109 6.7E-14 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_PC00437 f0805ff2b1151692b802793a922a2bea 297 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 123 135 6.7E-14 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_PC00437 f0805ff2b1151692b802793a922a2bea 297 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 258 276 6.7E-14 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_PC00437 f0805ff2b1151692b802793a922a2bea 297 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 3 25 6.7E-14 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_PC00437 f0805ff2b1151692b802793a922a2bea 297 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 8.3E-13 T 12-10-2018 AMJ96_PC00437 f0805ff2b1151692b802793a922a2bea 297 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 8.3E-13 T 12-10-2018 AMJ96_PC00437 f0805ff2b1151692b802793a922a2bea 297 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 248 270 8.3E-13 T 12-10-2018 AMJ96_PC00437 f0805ff2b1151692b802793a922a2bea 297 Gene3D G3DSA:3.50.50.60 3 289 4.4E-82 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03119 9ca1a05b30889c9deae871c300d523ec 666 Gene3D G3DSA:3.90.580.10 1 104 4.8E-34 T 12-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 AMJ96_CH03119 9ca1a05b30889c9deae871c300d523ec 666 Pfam PF01807 CHC2 zinc finger 5 101 5.9E-27 T 12-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AMJ96_CH03119 9ca1a05b30889c9deae871c300d523ec 666 Pfam PF10410 DnaB-helicase binding domain of primase 382 433 2.0E-7 T 12-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 AMJ96_CH03119 9ca1a05b30889c9deae871c300d523ec 666 Pfam PF08275 DNA primase catalytic core, N-terminal domain 127 253 3.2E-42 T 12-10-2018 IPR013264 DNA primase, catalytic core, N-terminal AMJ96_CH03119 9ca1a05b30889c9deae871c300d523ec 666 Gene3D G3DSA:3.40.1360.10 243 380 1.7E-39 T 12-10-2018 AMJ96_CH03119 9ca1a05b30889c9deae871c300d523ec 666 Pfam PF13662 Toprim domain 273 338 1.6E-17 T 12-10-2018 IPR006171 TOPRIM domain AMJ96_CH03119 9ca1a05b30889c9deae871c300d523ec 666 TIGRFAM TIGR01391 dnaG: DNA primase 3 431 6.8E-129 T 12-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 AMJ96_CH03119 9ca1a05b30889c9deae871c300d523ec 666 SMART SM00400 39 93 1.9E-23 T 12-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AMJ96_CH03119 9ca1a05b30889c9deae871c300d523ec 666 SUPERFAMILY SSF56731 116 437 1.31E-103 T 12-10-2018 AMJ96_CH03119 9ca1a05b30889c9deae871c300d523ec 666 PIRSF PIRSF002811 1 637 2.0E-137 T 12-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 AMJ96_CH03119 9ca1a05b30889c9deae871c300d523ec 666 SUPERFAMILY SSF57783 1 103 1.29E-31 T 12-10-2018 AMJ96_CH03119 9ca1a05b30889c9deae871c300d523ec 666 Hamap MF_00974 DNA primase [dnaG]. 2 631 25.357 T 12-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 AMJ96_CH03119 9ca1a05b30889c9deae871c300d523ec 666 SMART SM00493 272 343 1.0E-14 T 12-10-2018 IPR006171 TOPRIM domain AMJ96_CH03119 9ca1a05b30889c9deae871c300d523ec 666 Gene3D G3DSA:3.90.980.10 110 242 3.9E-41 T 12-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily AMJ96_PD00023 36ee769f0070f3dada0f7957d87a65e8 359 Pfam PF03631 Virulence factor BrkB 76 330 3.8E-58 T 12-10-2018 IPR017039 Virulence factor BrkB AMJ96_PD00023 36ee769f0070f3dada0f7957d87a65e8 359 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 67 328 3.3E-31 T 12-10-2018 IPR017039 Virulence factor BrkB AMJ96_PD00023 36ee769f0070f3dada0f7957d87a65e8 359 PIRSF PIRSF035875 50 348 3.8E-67 T 12-10-2018 IPR017039 Virulence factor BrkB AMJ96_CH00289 2084d8bcbf4afd9c54c21ac1366ed7da 526 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 13 500 26.829 T 12-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 AMJ96_CH00289 2084d8bcbf4afd9c54c21ac1366ed7da 526 Pfam PF02601 Exonuclease VII, large subunit 133 496 3.0E-93 T 12-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 AMJ96_CH00289 2084d8bcbf4afd9c54c21ac1366ed7da 526 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 17 358 9.9E-118 T 12-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 AMJ96_CH00289 2084d8bcbf4afd9c54c21ac1366ed7da 526 Pfam PF13742 OB-fold nucleic acid binding domain 16 109 3.2E-27 T 12-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 AMJ96_CH03292 590f5aa96b3fedabc61073c24942368f 587 SMART SM00244 23 192 2.1E-11 T 12-10-2018 IPR001107 Band 7 domain AMJ96_CH03292 590f5aa96b3fedabc61073c24942368f 587 Pfam PF15975 Flotillin 411 530 1.8E-33 T 12-10-2018 IPR031905 Flotillin, C-terminal domain Reactome: R-HSA-8849932 AMJ96_CH03292 590f5aa96b3fedabc61073c24942368f 587 Gene3D G3DSA:3.30.479.30 63 183 1.2E-23 T 12-10-2018 AMJ96_CH03292 590f5aa96b3fedabc61073c24942368f 587 SUPERFAMILY SSF117892 54 181 4.45E-21 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily AMJ96_CH03292 590f5aa96b3fedabc61073c24942368f 587 Pfam PF01145 SPFH domain / Band 7 family 32 181 4.3E-16 T 12-10-2018 IPR001107 Band 7 domain AMJ96_CH03193 dc45e62f823f66c8846d8f76b1203f5f 155 Pfam PF01575 MaoC like domain 10 113 4.2E-10 T 12-10-2018 IPR002539 MaoC-like dehydratase domain AMJ96_CH03193 dc45e62f823f66c8846d8f76b1203f5f 155 SUPERFAMILY SSF54637 6 152 4.28E-28 T 12-10-2018 IPR029069 HotDog domain superfamily AMJ96_CH03193 dc45e62f823f66c8846d8f76b1203f5f 155 Gene3D G3DSA:3.10.129.10 3 155 1.7E-34 T 12-10-2018 AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 Pfam PF03705 CheR methyltransferase, all-alpha domain 229 278 1.2E-11 T 12-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 Gene3D G3DSA:3.40.50.180 20 203 4.0E-24 T 12-10-2018 IPR035909 Methylesterase CheB, C-terminal AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 Pfam PF13596 PAS domain 741 847 4.3E-24 T 12-10-2018 AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 Gene3D G3DSA:3.40.50.150 291 488 8.4E-61 T 12-10-2018 AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 SUPERFAMILY SSF55785 727 847 1.49E-6 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 SMART SM00911 1116 1201 6.8E-21 T 12-10-2018 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 SUPERFAMILY SSF53335 292 484 2.54E-47 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 Pfam PF08447 PAS fold 1008 1095 2.3E-14 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 SMART SM00138 226 486 1.9E-76 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 Gene3D G3DSA:3.30.565.10 1174 1312 1.5E-6 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 Pfam PF01339 CheB methylesterase 28 171 1.7E-20 T 12-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 SUPERFAMILY SSF52738 23 203 8.5E-24 T 12-10-2018 IPR035909 Methylesterase CheB, C-terminal AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 SUPERFAMILY SSF55785 847 955 6.11E-18 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 PRINTS PR00996 Glutamate methyltransferase family signature 360 376 2.9E-25 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 PRINTS PR00996 Glutamate methyltransferase family signature 445 468 2.9E-25 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 PRINTS PR00996 Glutamate methyltransferase family signature 248 261 2.9E-25 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 PRINTS PR00996 Glutamate methyltransferase family signature 324 344 2.9E-25 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 PRINTS PR00996 Glutamate methyltransferase family signature 285 297 2.9E-25 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 PRINTS PR00996 Glutamate methyltransferase family signature 426 440 2.9E-25 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 SMART SM00091 529 594 150.0 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 SMART SM00091 984 1055 2.4E-6 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 SMART SM00091 861 929 3.3E-5 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 SMART SM00091 739 804 0.16 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 857 979 3.1E-16 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 981 1107 9.2E-11 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 Gene3D G3DSA:3.30.450.20 726 856 2.8E-13 T 12-10-2018 AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 Pfam PF07536 HWE histidine kinase 1116 1200 1.2E-15 T 12-10-2018 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 SUPERFAMILY SSF55785 969 1101 8.38E-22 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 SMART SM00086 1060 1103 4.8E-5 T 12-10-2018 IPR001610 PAC motif AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 SMART SM00086 935 972 230.0 T 12-10-2018 IPR001610 PAC motif AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 Gene3D G3DSA:3.30.450.20 857 970 8.2E-16 T 12-10-2018 AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 SUPERFAMILY SSF47757 227 294 2.62E-12 T 12-10-2018 AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 Pfam PF13426 PAS domain 872 970 1.9E-4 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 Pfam PF01739 CheR methyltransferase, SAM binding domain 293 479 9.0E-49 T 12-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal AMJ96_PD00184 2d69bd6991a96c59652f0ca311d0a1eb 1323 Gene3D G3DSA:3.30.450.20 974 1101 2.1E-28 T 12-10-2018 AMJ96_CH00271 7be2ad8f4cf9a2c48d413588e66ee75c 168 Gene3D G3DSA:3.10.20.80 2 75 1.3E-29 T 12-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMJ96_CH00271 7be2ad8f4cf9a2c48d413588e66ee75c 168 SUPERFAMILY SSF54364 4 78 2.88E-27 T 12-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMJ96_CH00271 7be2ad8f4cf9a2c48d413588e66ee75c 168 SUPERFAMILY SSF55200 84 168 5.23E-33 T 12-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 AMJ96_CH00271 7be2ad8f4cf9a2c48d413588e66ee75c 168 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 1 168 28.107 T 12-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMJ96_CH00271 7be2ad8f4cf9a2c48d413588e66ee75c 168 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 8 76 5.0E-29 T 12-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMJ96_CH00271 7be2ad8f4cf9a2c48d413588e66ee75c 168 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 8 168 3.6E-64 T 12-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AMJ96_CH00271 7be2ad8f4cf9a2c48d413588e66ee75c 168 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 83 168 9.2E-39 T 12-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 AMJ96_CH00271 7be2ad8f4cf9a2c48d413588e66ee75c 168 Gene3D G3DSA:3.30.110.10 76 168 1.9E-38 T 12-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 AMJ96_CH03123 7d27bfa9903da973b1dc405391ee083a 589 Gene3D G3DSA:3.30.70.1230 2 186 8.4E-55 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03123 7d27bfa9903da973b1dc405391ee083a 589 SUPERFAMILY SSF48452 402 560 3.79E-29 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03123 7d27bfa9903da973b1dc405391ee083a 589 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 8 169 4.6E-14 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH03123 7d27bfa9903da973b1dc405391ee083a 589 SUPERFAMILY SSF55073 2 172 1.37E-44 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03123 7d27bfa9903da973b1dc405391ee083a 589 Pfam PF13432 Tetratricopeptide repeat 498 558 8.9E-6 T 12-10-2018 AMJ96_CH03123 7d27bfa9903da973b1dc405391ee083a 589 Gene3D G3DSA:1.25.40.10 337 566 2.3E-36 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03123 7d27bfa9903da973b1dc405391ee083a 589 SMART SM00028 423 456 59.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH03123 7d27bfa9903da973b1dc405391ee083a 589 SMART SM00028 457 490 1.2 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH03123 7d27bfa9903da973b1dc405391ee083a 589 SMART SM00028 526 559 0.025 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH03123 7d27bfa9903da973b1dc405391ee083a 589 SMART SM00028 492 525 63.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02820 779c14aff142b25e34002e17589c08d8 381 Pfam PF00005 ABC transporter 19 161 1.8E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02820 779c14aff142b25e34002e17589c08d8 381 Gene3D G3DSA:2.40.50.140 289 356 6.1E-28 T 12-10-2018 AMJ96_CH02820 779c14aff142b25e34002e17589c08d8 381 Gene3D G3DSA:3.40.50.300 3 221 2.2E-64 T 12-10-2018 AMJ96_CH02820 779c14aff142b25e34002e17589c08d8 381 SMART SM00382 28 216 3.0E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02820 779c14aff142b25e34002e17589c08d8 381 SUPERFAMILY SSF50331 237 372 5.35E-24 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH02820 779c14aff142b25e34002e17589c08d8 381 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02820 779c14aff142b25e34002e17589c08d8 381 Pfam PF08402 TOBE domain 282 364 5.6E-8 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_CH02820 779c14aff142b25e34002e17589c08d8 381 SUPERFAMILY SSF52540 4 243 1.77E-84 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02820 779c14aff142b25e34002e17589c08d8 381 Gene3D G3DSA:2.40.50.940 222 365 6.1E-28 T 12-10-2018 AMJ96_CH03545 400407cf01b8e950e0f08cedc121702d 91 Gene3D G3DSA:1.10.10.10 10 91 3.4E-38 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03545 400407cf01b8e950e0f08cedc121702d 91 Pfam PF06627 Protein of unknown function (DUF1153) 8 90 1.7E-42 T 12-10-2018 IPR009534 Protein of unknown function DUF1153 AMJ96_CH03545 400407cf01b8e950e0f08cedc121702d 91 SUPERFAMILY SSF48295 12 90 1.05E-20 T 12-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMJ96_PC00116 a12f492820ab2a620d6186a6e415eee7 492 Gene3D G3DSA:3.40.190.10 94 451 8.2E-73 T 12-10-2018 AMJ96_PC00116 a12f492820ab2a620d6186a6e415eee7 492 SUPERFAMILY SSF53850 70 484 1.03E-62 T 12-10-2018 AMJ96_PC00116 a12f492820ab2a620d6186a6e415eee7 492 Gene3D G3DSA:3.40.190.10 187 480 8.2E-73 T 12-10-2018 AMJ96_PC00116 a12f492820ab2a620d6186a6e415eee7 492 Pfam PF01547 Bacterial extracellular solute-binding protein 86 374 4.1E-31 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH01874 3f6bcd07399423f2cdc9e0df04a054a1 204 Pfam PF02416 mttA/Hcf106 family 4 34 1.7E-5 T 12-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 AMJ96_CH01874 3f6bcd07399423f2cdc9e0df04a054a1 204 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 204 17.81 T 12-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 AMJ96_CH01874 3f6bcd07399423f2cdc9e0df04a054a1 204 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 1.3E-10 T 12-10-2018 AMJ96_CH01874 3f6bcd07399423f2cdc9e0df04a054a1 204 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 1.3E-10 T 12-10-2018 AMJ96_CH01874 3f6bcd07399423f2cdc9e0df04a054a1 204 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 1.3E-10 T 12-10-2018 AMJ96_CH01874 3f6bcd07399423f2cdc9e0df04a054a1 204 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 80 3.6E-29 T 12-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 AMJ96_CH01800 6c7b9cb288b8b2cf4d3dfdb4cf9bc5a9 720 SUPERFAMILY SSF48452 128 294 2.21E-23 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01800 6c7b9cb288b8b2cf4d3dfdb4cf9bc5a9 720 Gene3D G3DSA:1.10.10.10 30 126 9.4E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01800 6c7b9cb288b8b2cf4d3dfdb4cf9bc5a9 720 Pfam PF00561 alpha/beta hydrolase fold 317 546 2.0E-15 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH01800 6c7b9cb288b8b2cf4d3dfdb4cf9bc5a9 720 Gene3D G3DSA:3.40.50.1820 300 563 5.4E-48 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01800 6c7b9cb288b8b2cf4d3dfdb4cf9bc5a9 720 SMART SM01043 132 271 4.6E-40 T 12-10-2018 IPR005158 Bacterial transcriptional activator domain AMJ96_CH01800 6c7b9cb288b8b2cf4d3dfdb4cf9bc5a9 720 Pfam PF03704 Bacterial transcriptional activator domain 133 271 7.7E-29 T 12-10-2018 IPR005158 Bacterial transcriptional activator domain AMJ96_CH01800 6c7b9cb288b8b2cf4d3dfdb4cf9bc5a9 720 Gene3D G3DSA:3.30.70.1230 567 720 5.3E-20 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH01800 6c7b9cb288b8b2cf4d3dfdb4cf9bc5a9 720 Pfam PF00486 Transcriptional regulatory protein, C terminal 57 112 2.5E-5 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH01800 6c7b9cb288b8b2cf4d3dfdb4cf9bc5a9 720 SUPERFAMILY SSF55073 571 717 4.71E-16 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH01800 6c7b9cb288b8b2cf4d3dfdb4cf9bc5a9 720 SUPERFAMILY SSF46894 55 114 1.79E-8 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH01800 6c7b9cb288b8b2cf4d3dfdb4cf9bc5a9 720 Gene3D G3DSA:1.25.40.10 129 299 1.3E-36 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01800 6c7b9cb288b8b2cf4d3dfdb4cf9bc5a9 720 PRINTS PR00111 Alpha/beta hydrolase fold signature 390 403 5.5E-6 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH01800 6c7b9cb288b8b2cf4d3dfdb4cf9bc5a9 720 PRINTS PR00111 Alpha/beta hydrolase fold signature 346 361 5.5E-6 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH01800 6c7b9cb288b8b2cf4d3dfdb4cf9bc5a9 720 PRINTS PR00111 Alpha/beta hydrolase fold signature 404 417 5.5E-6 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH01800 6c7b9cb288b8b2cf4d3dfdb4cf9bc5a9 720 PRINTS PR00111 Alpha/beta hydrolase fold signature 508 522 5.5E-6 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH01800 6c7b9cb288b8b2cf4d3dfdb4cf9bc5a9 720 SUPERFAMILY SSF53474 284 562 1.63E-46 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01800 6c7b9cb288b8b2cf4d3dfdb4cf9bc5a9 720 SMART SM00862 52 118 0.0039 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH03926 83b632ed623f27e8bca55e3c73ef98fa 327 Pfam PF13384 Homeodomain-like domain 18 51 8.0E-7 T 12-10-2018 AMJ96_CH03926 83b632ed623f27e8bca55e3c73ef98fa 327 Gene3D G3DSA:3.40.50.1360 63 323 1.1E-69 T 12-10-2018 AMJ96_CH03926 83b632ed623f27e8bca55e3c73ef98fa 327 SUPERFAMILY SSF100950 67 324 8.37E-66 T 12-10-2018 IPR037171 NagB/RpiA transferase-like AMJ96_CH03926 83b632ed623f27e8bca55e3c73ef98fa 327 Gene3D G3DSA:1.10.10.10 8 62 1.4E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03926 83b632ed623f27e8bca55e3c73ef98fa 327 Pfam PF04198 Putative sugar-binding domain 68 321 1.0E-62 T 12-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 AMJ96_CH03926 83b632ed623f27e8bca55e3c73ef98fa 327 SUPERFAMILY SSF88659 24 56 2.49E-5 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_PC00350 33cafd93f8c041a3e5950399418c907b 159 Gene3D G3DSA:3.40.630.30 12 142 1.0E-11 T 12-10-2018 AMJ96_PC00350 33cafd93f8c041a3e5950399418c907b 159 Pfam PF00583 Acetyltransferase (GNAT) family 39 119 1.1E-5 T 12-10-2018 IPR000182 GNAT domain AMJ96_PC00350 33cafd93f8c041a3e5950399418c907b 159 SUPERFAMILY SSF55729 27 135 1.72E-13 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH02394 eb9f6aa92691bfaed3c8ca6ffd0c2d2a 164 SUPERFAMILY SSF53254 10 159 3.21E-26 T 12-10-2018 IPR029033 Histidine phosphatase superfamily AMJ96_CH02394 eb9f6aa92691bfaed3c8ca6ffd0c2d2a 164 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 11 85 8.4E-12 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMJ96_CH02394 eb9f6aa92691bfaed3c8ca6ffd0c2d2a 164 SMART SM00855 10 135 9.3E-10 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMJ96_CH02394 eb9f6aa92691bfaed3c8ca6ffd0c2d2a 164 Gene3D G3DSA:3.40.50.1240 6 164 2.9E-44 T 12-10-2018 IPR029033 Histidine phosphatase superfamily AMJ96_CH01865 0d59845d76fbd906309f0cfb60ca4c2f 263 Gene3D G3DSA:3.60.10.10 1 261 1.5E-71 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMJ96_CH01865 0d59845d76fbd906309f0cfb60ca4c2f 263 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 252 5.0E-21 T 12-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase AMJ96_CH01865 0d59845d76fbd906309f0cfb60ca4c2f 263 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 12-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 AMJ96_CH01865 0d59845d76fbd906309f0cfb60ca4c2f 263 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 258 1.3E-74 T 12-10-2018 AMJ96_CH01865 0d59845d76fbd906309f0cfb60ca4c2f 263 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 216 227 - T 12-10-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 AMJ96_CH01865 0d59845d76fbd906309f0cfb60ca4c2f 263 SUPERFAMILY SSF56219 1 260 7.33E-82 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMJ96_CH01865 0d59845d76fbd906309f0cfb60ca4c2f 263 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 259 4.4E-70 T 12-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 AMJ96_PC00360 d6ea78bf94cfac40fb7f197a4c03d080 618 Pfam PF00005 ABC transporter 337 486 2.3E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00360 d6ea78bf94cfac40fb7f197a4c03d080 618 Pfam PF00005 ABC transporter 36 193 4.4E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00360 d6ea78bf94cfac40fb7f197a4c03d080 618 ProSitePatterns PS00211 ABC transporters family signature. 166 180 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00360 d6ea78bf94cfac40fb7f197a4c03d080 618 Gene3D G3DSA:3.40.50.300 307 602 3.0E-85 T 12-10-2018 AMJ96_PC00360 d6ea78bf94cfac40fb7f197a4c03d080 618 Gene3D G3DSA:3.40.50.300 13 302 5.5E-86 T 12-10-2018 AMJ96_PC00360 d6ea78bf94cfac40fb7f197a4c03d080 618 SMART SM00382 345 537 1.8E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00360 d6ea78bf94cfac40fb7f197a4c03d080 618 SMART SM00382 44 243 5.2E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00360 d6ea78bf94cfac40fb7f197a4c03d080 618 SUPERFAMILY SSF52540 15 265 2.27E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00360 d6ea78bf94cfac40fb7f197a4c03d080 618 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 539 572 4.1E-9 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PC00360 d6ea78bf94cfac40fb7f197a4c03d080 618 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 245 276 7.0E-7 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PC00360 d6ea78bf94cfac40fb7f197a4c03d080 618 ProSitePatterns PS00211 ABC transporters family signature. 460 474 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00360 d6ea78bf94cfac40fb7f197a4c03d080 618 SUPERFAMILY SSF52540 309 559 4.87E-72 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03535 4dfaedfa22439a3b38744206f2182ff6 305 SUPERFAMILY SSF52172 11 140 3.27E-40 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH03535 4dfaedfa22439a3b38744206f2182ff6 305 Gene3D G3DSA:1.10.10.10 237 302 3.0E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03535 4dfaedfa22439a3b38744206f2182ff6 305 SMART SM00421 241 298 6.1E-22 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH03535 4dfaedfa22439a3b38744206f2182ff6 305 Pfam PF00196 Bacterial regulatory proteins, luxR family 243 298 7.5E-19 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH03535 4dfaedfa22439a3b38744206f2182ff6 305 Pfam PF00072 Response regulator receiver domain 11 123 3.8E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03535 4dfaedfa22439a3b38744206f2182ff6 305 SUPERFAMILY SSF46894 226 299 1.22E-18 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH03535 4dfaedfa22439a3b38744206f2182ff6 305 Gene3D G3DSA:3.40.50.2300 9 142 5.4E-37 T 12-10-2018 AMJ96_CH03535 4dfaedfa22439a3b38744206f2182ff6 305 SMART SM00448 9 122 3.1E-37 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03535 4dfaedfa22439a3b38744206f2182ff6 305 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 244 258 1.1E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH03535 4dfaedfa22439a3b38744206f2182ff6 305 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 274 286 1.1E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH03535 4dfaedfa22439a3b38744206f2182ff6 305 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 258 274 1.1E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH04041 874dadda58aee99e57144e0035a3276d 422 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 57 75 - T 12-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site AMJ96_CH04041 874dadda58aee99e57144e0035a3276d 422 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 29 373 1.3E-25 T 12-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 AMJ96_CH04041 874dadda58aee99e57144e0035a3276d 422 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 35 281 2.6E-63 T 12-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 AMJ96_CH04041 874dadda58aee99e57144e0035a3276d 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 77 89 1.6E-25 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMJ96_CH04041 874dadda58aee99e57144e0035a3276d 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 190 203 1.6E-25 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMJ96_CH04041 874dadda58aee99e57144e0035a3276d 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 272 291 1.6E-25 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMJ96_CH04041 874dadda58aee99e57144e0035a3276d 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 373 386 1.6E-25 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMJ96_CH04041 874dadda58aee99e57144e0035a3276d 422 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 57 75 1.6E-25 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMJ96_CH04041 874dadda58aee99e57144e0035a3276d 422 SUPERFAMILY SSF50621 256 418 1.26E-50 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMJ96_CH04041 874dadda58aee99e57144e0035a3276d 422 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 15 416 40.406 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMJ96_CH04041 874dadda58aee99e57144e0035a3276d 422 Gene3D G3DSA:3.20.20.10 34 277 1.2E-155 T 12-10-2018 IPR029066 PLP-binding barrel AMJ96_CH04041 874dadda58aee99e57144e0035a3276d 422 SUPERFAMILY SSF51419 26 284 3.53E-82 T 12-10-2018 IPR029066 PLP-binding barrel AMJ96_CH04041 874dadda58aee99e57144e0035a3276d 422 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 7 415 1.2E-146 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMJ96_CH04041 874dadda58aee99e57144e0035a3276d 422 Gene3D G3DSA:2.40.37.10 16 412 1.2E-155 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMJ96_CH04041 874dadda58aee99e57144e0035a3276d 422 PRINTS PR01181 Diaminopimelate decarboxylase signature 300 318 3.0E-26 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMJ96_CH04041 874dadda58aee99e57144e0035a3276d 422 PRINTS PR01181 Diaminopimelate decarboxylase signature 383 405 3.0E-26 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMJ96_CH04041 874dadda58aee99e57144e0035a3276d 422 PRINTS PR01181 Diaminopimelate decarboxylase signature 75 92 3.0E-26 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMJ96_CH04041 874dadda58aee99e57144e0035a3276d 422 PRINTS PR01181 Diaminopimelate decarboxylase signature 164 173 3.0E-26 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMJ96_CH01217 20640553424ce3d24229b4a54b7fb1e9 171 SUPERFAMILY SSF46785 12 148 7.04E-30 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01217 20640553424ce3d24229b4a54b7fb1e9 171 Gene3D G3DSA:1.10.10.10 15 152 2.4E-32 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01217 20640553424ce3d24229b4a54b7fb1e9 171 SMART SM00347 37 142 5.0E-12 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH01217 20640553424ce3d24229b4a54b7fb1e9 171 Pfam PF01047 MarR family 44 100 1.1E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH03503 2ad579142ba768a404ee58c80dc15f85 136 SMART SM00450 30 127 1.8E-12 T 12-10-2018 IPR001763 Rhodanese-like domain AMJ96_CH03503 2ad579142ba768a404ee58c80dc15f85 136 SUPERFAMILY SSF52821 16 130 5.24E-25 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily AMJ96_CH03503 2ad579142ba768a404ee58c80dc15f85 136 ProSitePatterns PS00380 Rhodanese signature 1. 55 66 - T 12-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 AMJ96_CH03503 2ad579142ba768a404ee58c80dc15f85 136 Gene3D G3DSA:3.40.250.10 11 129 2.8E-28 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily AMJ96_CH03503 2ad579142ba768a404ee58c80dc15f85 136 Pfam PF00581 Rhodanese-like domain 32 123 6.7E-11 T 12-10-2018 IPR001763 Rhodanese-like domain AMJ96_PC00445 e4fded1876da128423deebf4d3e854fa 420 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 30 398 7.7E-56 T 12-10-2018 IPR003776 YcaO-like domain AMJ96_PC00445 e4fded1876da128423deebf4d3e854fa 420 Gene3D G3DSA:1.10.490.140 163 274 3.1E-24 T 12-10-2018 AMJ96_PC00445 e4fded1876da128423deebf4d3e854fa 420 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 78 397 4.2E-70 T 12-10-2018 IPR003776 YcaO-like domain AMJ96_PC00238 e409345bc06103e2885315de91e6bf31 487 PIRSF PIRSF000850 373 481 0.0076 T 12-10-2018 AMJ96_PC00238 e409345bc06103e2885315de91e6bf31 487 PIRSF PIRSF000850 107 192 3.8 T 12-10-2018 AMJ96_PC00238 e409345bc06103e2885315de91e6bf31 487 PIRSF PIRSF000850 276 299 190.0 T 12-10-2018 AMJ96_PC00238 e409345bc06103e2885315de91e6bf31 487 PIRSF PIRSF000850 311 381 0.041 T 12-10-2018 AMJ96_PC00238 e409345bc06103e2885315de91e6bf31 487 Gene3D G3DSA:3.30.870.10 116 303 1.0E-36 T 12-10-2018 AMJ96_PC00238 e409345bc06103e2885315de91e6bf31 487 SMART SM00155 221 248 0.71 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AMJ96_PC00238 e409345bc06103e2885315de91e6bf31 487 SMART SM00155 400 427 1.4E-4 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AMJ96_PC00238 e409345bc06103e2885315de91e6bf31 487 Pfam PF13091 PLD-like domain 138 246 2.1E-15 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AMJ96_PC00238 e409345bc06103e2885315de91e6bf31 487 Pfam PF13091 PLD-like domain 330 453 3.5E-26 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AMJ96_PC00238 e409345bc06103e2885315de91e6bf31 487 Pfam PF13396 Phospholipase_D-nuclease N-terminal 24 60 1.9E-5 T 12-10-2018 IPR027379 Cardiolipin synthase N-terminal AMJ96_PC00238 e409345bc06103e2885315de91e6bf31 487 Gene3D G3DSA:3.30.870.10 317 459 1.0E-24 T 12-10-2018 AMJ96_PC00238 e409345bc06103e2885315de91e6bf31 487 SUPERFAMILY SSF56024 277 473 1.44E-43 T 12-10-2018 AMJ96_PC00238 e409345bc06103e2885315de91e6bf31 487 SUPERFAMILY SSF56024 113 319 1.66E-44 T 12-10-2018 AMJ96_PA00269 61587b556471f1ea24b405c255354914 360 Pfam PF00005 ABC transporter 21 162 2.2E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00269 61587b556471f1ea24b405c255354914 360 Gene3D G3DSA:3.40.50.300 4 222 3.7E-63 T 12-10-2018 AMJ96_PA00269 61587b556471f1ea24b405c255354914 360 SUPERFAMILY SSF52540 5 243 8.44E-81 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00269 61587b556471f1ea24b405c255354914 360 SUPERFAMILY SSF50331 238 359 4.86E-24 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_PA00269 61587b556471f1ea24b405c255354914 360 Gene3D G3DSA:2.40.50.940 223 354 1.0E-28 T 12-10-2018 AMJ96_PA00269 61587b556471f1ea24b405c255354914 360 Gene3D G3DSA:2.40.50.140 288 345 1.0E-28 T 12-10-2018 AMJ96_PA00269 61587b556471f1ea24b405c255354914 360 SMART SM00382 29 212 1.5E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00269 61587b556471f1ea24b405c255354914 360 Pfam PF08402 TOBE domain 281 353 1.5E-7 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_PA00269 61587b556471f1ea24b405c255354914 360 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH04144 9e06af8efc40180e450ab683db6601c7 259 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 80 88 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AMJ96_CH04144 9e06af8efc40180e450ab683db6601c7 259 Pfam PF13534 4Fe-4S dicluster domain 169 242 8.6E-10 T 12-10-2018 AMJ96_CH04144 9e06af8efc40180e450ab683db6601c7 259 Gene3D G3DSA:1.10.1060.10 129 259 3.5E-59 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMJ96_CH04144 9e06af8efc40180e450ab683db6601c7 259 Gene3D G3DSA:3.10.20.30 20 128 1.4E-40 T 12-10-2018 IPR012675 Beta-grasp domain superfamily AMJ96_CH04144 9e06af8efc40180e450ab683db6601c7 259 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 30 133 2.3E-30 T 12-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH04144 9e06af8efc40180e450ab683db6601c7 259 SUPERFAMILY SSF46548 130 257 9.42E-37 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMJ96_CH04144 9e06af8efc40180e450ab683db6601c7 259 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 170 181 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMJ96_CH04144 9e06af8efc40180e450ab683db6601c7 259 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 32 251 7.3E-80 T 12-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH04144 9e06af8efc40180e450ab683db6601c7 259 SUPERFAMILY SSF54292 27 128 1.16E-29 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 SUPERFAMILY SSF51120 135 338 3.31E-15 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Gene3D G3DSA:2.150.10.10 411 458 1.4E-9 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Gene3D G3DSA:2.60.40.60 727 818 2.9E-15 T 12-10-2018 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 280 298 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 SUPERFAMILY SSF51120 415 493 1.96E-17 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 443 461 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 650 668 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 438 454 0.009 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 160 169 41.0 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 636 652 0.051 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 61 78 0.12 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 653 669 0.52 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 137 145 54.0 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 97 114 0.0029 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 266 282 0.26 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 283 299 0.13 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 474 490 0.0055 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 80 96 0.011 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 419 436 0.8 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 455 472 0.044 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 619 634 1.7 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 PRINTS PR00313 NodO calcium binding signature 293 302 5.6E-9 T 12-10-2018 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 PRINTS PR00313 NodO calcium binding signature 138 146 5.6E-9 T 12-10-2018 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 PRINTS PR00313 NodO calcium binding signature 95 106 5.6E-9 T 12-10-2018 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 PRINTS PR00313 NodO calcium binding signature 284 292 5.6E-9 T 12-10-2018 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Gene3D G3DSA:2.150.10.10 27 130 6.3E-19 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Gene3D G3DSA:2.150.10.10 601 726 1.5E-18 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Gene3D G3DSA:2.60.40.60 819 918 3.8E-9 T 12-10-2018 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 434 452 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 76 94 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 SMART SM00112 850 923 0.1 T 12-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 SMART SM00112 751 823 5.1E-9 T 12-10-2018 IPR002126 Cadherin-like GO:0005509|GO:0007156|GO:0016020 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 94 112 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 SUPERFAMILY SSF51120 43 175 7.85E-16 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 SUPERFAMILY SSF49313 832 915 1.86E-7 T 12-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 271 289 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Gene3D G3DSA:2.150.10.10 244 387 1.2E-15 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 Gene3D G3DSA:2.150.10.10 459 600 1.6E-8 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 SUPERFAMILY SSF49313 736 818 7.85E-11 T 12-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 641 659 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 452 470 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMJ96_CH02723 07bdcaf1eb1893cb76cc62e9edc4092a 932 SUPERFAMILY SSF51120 505 701 3.56E-16 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH02150 de443ef0f9f6ce0f63e34a574fc461af 608 SUPERFAMILY SSF53697 244 608 3.53E-106 T 12-10-2018 AMJ96_CH02150 de443ef0f9f6ce0f63e34a574fc461af 608 Gene3D G3DSA:3.40.50.10490 444 593 8.3E-137 T 12-10-2018 AMJ96_CH02150 de443ef0f9f6ce0f63e34a574fc461af 608 SUPERFAMILY SSF56235 2 232 1.8E-72 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMJ96_CH02150 de443ef0f9f6ce0f63e34a574fc461af 608 Gene3D G3DSA:3.40.50.10490 246 607 8.3E-137 T 12-10-2018 AMJ96_CH02150 de443ef0f9f6ce0f63e34a574fc461af 608 Pfam PF01380 SIS domain 459 590 9.9E-33 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMJ96_CH02150 de443ef0f9f6ce0f63e34a574fc461af 608 Pfam PF01380 SIS domain 293 414 7.5E-25 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMJ96_CH02150 de443ef0f9f6ce0f63e34a574fc461af 608 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 608 38.831 T 12-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 AMJ96_CH02150 de443ef0f9f6ce0f63e34a574fc461af 608 Pfam PF13522 Glutamine amidotransferase domain 67 190 3.0E-19 T 12-10-2018 AMJ96_CH02150 de443ef0f9f6ce0f63e34a574fc461af 608 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 608 6.5E-233 T 12-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 AMJ96_CH02150 de443ef0f9f6ce0f63e34a574fc461af 608 Gene3D G3DSA:3.60.20.10 2 240 3.2E-73 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMJ96_PC00131 f290cba49f5e0d23092b99609967281f 393 Gene3D G3DSA:3.40.50.300 3 239 4.2E-63 T 12-10-2018 AMJ96_PC00131 f290cba49f5e0d23092b99609967281f 393 SUPERFAMILY SSF52540 4 262 9.94E-80 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00131 f290cba49f5e0d23092b99609967281f 393 SMART SM00382 28 229 6.4E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00131 f290cba49f5e0d23092b99609967281f 393 SUPERFAMILY SSF50331 255 381 4.62E-17 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_PC00131 f290cba49f5e0d23092b99609967281f 393 Gene3D G3DSA:2.40.50.940 240 366 7.2E-22 T 12-10-2018 AMJ96_PC00131 f290cba49f5e0d23092b99609967281f 393 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00131 f290cba49f5e0d23092b99609967281f 393 Pfam PF00005 ABC transporter 24 179 7.0E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00131 f290cba49f5e0d23092b99609967281f 393 Gene3D G3DSA:2.40.50.140 298 365 7.2E-22 T 12-10-2018 AMJ96_PC00428 700c43a181eda3d5582aa1d04480f556 301 Pfam PF13522 Glutamine amidotransferase domain 138 269 1.4E-21 T 12-10-2018 AMJ96_PC00428 700c43a181eda3d5582aa1d04480f556 301 Gene3D G3DSA:3.60.20.10 109 301 4.3E-39 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMJ96_PC00428 700c43a181eda3d5582aa1d04480f556 301 Gene3D G3DSA:3.60.20.10 2 86 2.9E-6 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMJ96_PC00428 700c43a181eda3d5582aa1d04480f556 301 SUPERFAMILY SSF56235 2 299 7.02E-48 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMJ96_PB00241 560bd1b800ec87d0cf7447002710c939 408 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 27 328 7.0E-94 T 12-10-2018 IPR010732 Type VI secretion, TssG-like AMJ96_PB00241 560bd1b800ec87d0cf7447002710c939 408 Pfam PF06996 Type VI secretion, TssG 27 328 1.3E-91 T 12-10-2018 IPR010732 Type VI secretion, TssG-like AMJ96_CH03925 04aa79fcc72105c2fe20b9351e55fd6b 321 SUPERFAMILY SSF51569 1 314 2.3E-106 T 12-10-2018 AMJ96_CH03925 04aa79fcc72105c2fe20b9351e55fd6b 321 Gene3D G3DSA:3.20.20.70 1 321 1.8E-131 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH03925 04aa79fcc72105c2fe20b9351e55fd6b 321 TIGRFAM TIGR00874 talAB: transaldolase 4 315 1.4E-142 T 12-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AMJ96_CH03925 04aa79fcc72105c2fe20b9351e55fd6b 321 ProSitePatterns PS01054 Transaldolase signature 1. 31 39 - T 12-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AMJ96_CH03925 04aa79fcc72105c2fe20b9351e55fd6b 321 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 14 308 5.9E-96 T 12-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AMJ96_CH03925 04aa79fcc72105c2fe20b9351e55fd6b 321 Hamap MF_00492 Transaldolase [tal]. 2 316 50.352 T 12-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AMJ96_CH03925 04aa79fcc72105c2fe20b9351e55fd6b 321 ProSitePatterns PS00958 Transaldolase active site. 129 146 - T 12-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 AMJ96_CH03215 fc8107a82a9fd1d1dcb3d75e3d4d2cad 138 Gene3D G3DSA:3.40.630.30 34 138 2.7E-22 T 12-10-2018 AMJ96_CH03215 fc8107a82a9fd1d1dcb3d75e3d4d2cad 138 SUPERFAMILY SSF55729 14 138 1.05E-21 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH03215 fc8107a82a9fd1d1dcb3d75e3d4d2cad 138 Pfam PF00583 Acetyltransferase (GNAT) family 42 116 8.9E-6 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH03904 c52059f465bd2faba1e8f529644f2d61 533 Gene3D G3DSA:1.20.1250.20 285 525 1.2E-18 T 12-10-2018 AMJ96_CH03904 c52059f465bd2faba1e8f529644f2d61 533 Pfam PF07690 Major Facilitator Superfamily 35 428 1.0E-43 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH03904 c52059f465bd2faba1e8f529644f2d61 533 PRINTS PR01036 Tetracycline resistance protein TetB signature 419 438 2.6E-5 T 12-10-2018 AMJ96_CH03904 c52059f465bd2faba1e8f529644f2d61 533 PRINTS PR01036 Tetracycline resistance protein TetB signature 33 57 2.6E-5 T 12-10-2018 AMJ96_CH03904 c52059f465bd2faba1e8f529644f2d61 533 PRINTS PR01036 Tetracycline resistance protein TetB signature 154 178 2.6E-5 T 12-10-2018 AMJ96_CH03904 c52059f465bd2faba1e8f529644f2d61 533 Gene3D G3DSA:1.20.1720.10 28 236 7.6E-36 T 12-10-2018 AMJ96_CH03904 c52059f465bd2faba1e8f529644f2d61 533 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 28 514 3.4E-133 T 12-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 AMJ96_CH03904 c52059f465bd2faba1e8f529644f2d61 533 SUPERFAMILY SSF103473 24 521 9.02E-64 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH00649 86eb28202f43e685e93ac4bd471cf4b5 336 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 50 1.0E-17 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH00649 86eb28202f43e685e93ac4bd471cf4b5 336 SMART SM00354 3 73 5.5E-30 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH00649 86eb28202f43e685e93ac4bd471cf4b5 336 Pfam PF13377 Periplasmic binding protein-like domain 165 330 1.5E-32 T 12-10-2018 AMJ96_CH00649 86eb28202f43e685e93ac4bd471cf4b5 336 ProSitePatterns PS00356 LacI-type HTH domain signature. 6 24 - T 12-10-2018 AMJ96_CH00649 86eb28202f43e685e93ac4bd471cf4b5 336 Gene3D G3DSA:1.10.260.40 1 57 2.8E-22 T 12-10-2018 AMJ96_CH00649 86eb28202f43e685e93ac4bd471cf4b5 336 Gene3D G3DSA:3.40.50.2300 58 308 9.2E-79 T 12-10-2018 AMJ96_CH00649 86eb28202f43e685e93ac4bd471cf4b5 336 Gene3D G3DSA:3.40.50.2300 157 291 9.2E-79 T 12-10-2018 AMJ96_CH00649 86eb28202f43e685e93ac4bd471cf4b5 336 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 15 25 3.4E-5 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH00649 86eb28202f43e685e93ac4bd471cf4b5 336 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 5 15 3.4E-5 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH00649 86eb28202f43e685e93ac4bd471cf4b5 336 SUPERFAMILY SSF47413 3 60 1.37E-17 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH00649 86eb28202f43e685e93ac4bd471cf4b5 336 SUPERFAMILY SSF53822 62 333 3.53E-70 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH01384 2b297c0369eb526a10e58dfd7cb076ef 265 Pfam PF04962 KduI/IolB family 10 262 2.0E-111 T 12-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 AMJ96_CH01384 2b297c0369eb526a10e58dfd7cb076ef 265 Gene3D G3DSA:2.60.120.10 13 120 8.8E-36 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH01384 2b297c0369eb526a10e58dfd7cb076ef 265 PIRSF PIRSF036628 1 265 1.6E-115 T 12-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 AMJ96_CH01384 2b297c0369eb526a10e58dfd7cb076ef 265 SUPERFAMILY SSF51182 8 251 3.78E-76 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH01384 2b297c0369eb526a10e58dfd7cb076ef 265 TIGRFAM TIGR04378 myo_inos_iolB: 5-deoxy-glucuronate isomerase 17 262 7.9E-99 T 12-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 AMJ96_CH01384 2b297c0369eb526a10e58dfd7cb076ef 265 Gene3D G3DSA:2.60.120.10 121 265 4.0E-58 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH03382 774128264e17b27dc2430ca764b4f615 355 Pfam PF00027 Cyclic nucleotide-binding domain 253 328 1.5E-17 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_CH03382 774128264e17b27dc2430ca764b4f615 355 PRINTS PR00169 Potassium channel signature 187 213 1.8E-11 T 12-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 AMJ96_CH03382 774128264e17b27dc2430ca764b4f615 355 PRINTS PR00169 Potassium channel signature 98 124 1.8E-11 T 12-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 AMJ96_CH03382 774128264e17b27dc2430ca764b4f615 355 PRINTS PR00169 Potassium channel signature 158 180 1.8E-11 T 12-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 AMJ96_CH03382 774128264e17b27dc2430ca764b4f615 355 Gene3D G3DSA:2.60.120.10 218 350 2.1E-37 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH03382 774128264e17b27dc2430ca764b4f615 355 Gene3D G3DSA:1.20.120.540 1 123 7.1E-55 T 12-10-2018 IPR027378 Cyclic nucleotide-regulated ion channel, N-terminal AMJ96_CH03382 774128264e17b27dc2430ca764b4f615 355 SUPERFAMILY SSF81324 15 214 2.58E-25 T 12-10-2018 AMJ96_CH03382 774128264e17b27dc2430ca764b4f615 355 SMART SM00100 234 346 2.5E-19 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_CH03382 774128264e17b27dc2430ca764b4f615 355 Pfam PF07885 Ion channel 143 211 1.3E-11 T 12-10-2018 IPR013099 Potassium channel domain AMJ96_CH03382 774128264e17b27dc2430ca764b4f615 355 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 261 277 - T 12-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site AMJ96_CH03382 774128264e17b27dc2430ca764b4f615 355 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 296 313 - T 12-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site AMJ96_CH03382 774128264e17b27dc2430ca764b4f615 355 SUPERFAMILY SSF51206 224 348 3.01E-30 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like AMJ96_CH03382 774128264e17b27dc2430ca764b4f615 355 Gene3D G3DSA:1.10.287.70 124 217 8.3E-21 T 12-10-2018 AMJ96_CH03922 1dc7f2ca41912889d49133a7be0a255f 246 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 74 231 1.5E-28 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03922 1dc7f2ca41912889d49133a7be0a255f 246 Pfam PF04542 Sigma-70 region 2 77 140 2.2E-12 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03922 1dc7f2ca41912889d49133a7be0a255f 246 SUPERFAMILY SSF88659 175 232 7.41E-15 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_CH03922 1dc7f2ca41912889d49133a7be0a255f 246 Pfam PF08281 Sigma-70, region 4 180 230 1.7E-15 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_CH03922 1dc7f2ca41912889d49133a7be0a255f 246 Gene3D G3DSA:1.10.1740.10 59 144 1.6E-20 T 12-10-2018 AMJ96_CH03922 1dc7f2ca41912889d49133a7be0a255f 246 SUPERFAMILY SSF88946 70 151 7.46E-18 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03922 1dc7f2ca41912889d49133a7be0a255f 246 Gene3D G3DSA:1.10.10.10 154 238 2.6E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03922 1dc7f2ca41912889d49133a7be0a255f 246 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 97 127 - T 12-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_CH02043 8e65d494da212069b66fbbca0c7f74ea 756 SMART SM00304 324 377 1.4E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH02043 8e65d494da212069b66fbbca0c7f74ea 756 Gene3D G3DSA:1.10.287.130 501 576 5.4E-10 T 12-10-2018 AMJ96_CH02043 8e65d494da212069b66fbbca0c7f74ea 756 SUPERFAMILY SSF55785 378 497 2.74E-9 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH02043 8e65d494da212069b66fbbca0c7f74ea 756 SUPERFAMILY SSF158472 325 374 3.66E-7 T 12-10-2018 AMJ96_CH02043 8e65d494da212069b66fbbca0c7f74ea 756 SUPERFAMILY SSF55874 572 738 1.3E-28 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02043 8e65d494da212069b66fbbca0c7f74ea 756 Gene3D G3DSA:3.30.450.20 381 500 7.2E-11 T 12-10-2018 AMJ96_CH02043 8e65d494da212069b66fbbca0c7f74ea 756 SMART SM00091 391 457 0.0023 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02043 8e65d494da212069b66fbbca0c7f74ea 756 PIRSF PIRSF037532 9 742 4.6E-236 T 12-10-2018 IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator AMJ96_CH02043 8e65d494da212069b66fbbca0c7f74ea 756 PRINTS PR00344 Bacterial sensor protein C-terminal signature 694 712 6.8E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02043 8e65d494da212069b66fbbca0c7f74ea 756 PRINTS PR00344 Bacterial sensor protein C-terminal signature 665 679 6.8E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02043 8e65d494da212069b66fbbca0c7f74ea 756 PRINTS PR00344 Bacterial sensor protein C-terminal signature 723 736 6.8E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02043 8e65d494da212069b66fbbca0c7f74ea 756 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 620 737 6.5E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH02043 8e65d494da212069b66fbbca0c7f74ea 756 Gene3D G3DSA:1.20.1480.50 284 380 2.3E-9 T 12-10-2018 AMJ96_CH02043 8e65d494da212069b66fbbca0c7f74ea 756 Gene3D G3DSA:3.30.565.10 579 740 2.0E-26 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02043 8e65d494da212069b66fbbca0c7f74ea 756 Pfam PF00512 His Kinase A (phospho-acceptor) domain 509 576 8.2E-8 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH02043 8e65d494da212069b66fbbca0c7f74ea 756 SMART SM00387 619 739 2.2E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH02043 8e65d494da212069b66fbbca0c7f74ea 756 SUPERFAMILY SSF47384 502 577 3.34E-10 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH02043 8e65d494da212069b66fbbca0c7f74ea 756 SMART SM00388 507 579 5.8E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH02043 8e65d494da212069b66fbbca0c7f74ea 756 Pfam PF00989 PAS fold 392 496 7.7E-7 T 12-10-2018 IPR013767 PAS fold GO:0006355 AMJ96_CH01390 c3215d1cd5a27bdced73ffe69ec5b497 405 Pfam PF14759 Reductase C-terminal 320 404 1.6E-30 T 12-10-2018 IPR028202 Reductase, C-terminal AMJ96_CH01390 c3215d1cd5a27bdced73ffe69ec5b497 405 SUPERFAMILY SSF55424 312 404 9.61E-29 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMJ96_CH01390 c3215d1cd5a27bdced73ffe69ec5b497 405 SUPERFAMILY SSF51905 4 189 1.4E-47 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01390 c3215d1cd5a27bdced73ffe69ec5b497 405 Gene3D G3DSA:3.30.390.30 320 404 1.7E-29 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMJ96_CH01390 c3215d1cd5a27bdced73ffe69ec5b497 405 Gene3D G3DSA:3.50.50.60 5 308 7.8E-104 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01390 c3215d1cd5a27bdced73ffe69ec5b497 405 Gene3D G3DSA:3.50.50.60 114 240 7.8E-104 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01390 c3215d1cd5a27bdced73ffe69ec5b497 405 SUPERFAMILY SSF51905 147 336 3.67E-34 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01390 c3215d1cd5a27bdced73ffe69ec5b497 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 4.3E-27 T 12-10-2018 AMJ96_CH01390 c3215d1cd5a27bdced73ffe69ec5b497 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 280 4.3E-27 T 12-10-2018 AMJ96_CH01390 c3215d1cd5a27bdced73ffe69ec5b497 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 4.3E-27 T 12-10-2018 AMJ96_CH01390 c3215d1cd5a27bdced73ffe69ec5b497 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 4.3E-27 T 12-10-2018 AMJ96_CH01390 c3215d1cd5a27bdced73ffe69ec5b497 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 233 249 4.3E-27 T 12-10-2018 AMJ96_CH01390 c3215d1cd5a27bdced73ffe69ec5b497 405 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 301 3.0E-61 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_CH01390 c3215d1cd5a27bdced73ffe69ec5b497 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 273 280 3.5E-17 T 12-10-2018 AMJ96_CH01390 c3215d1cd5a27bdced73ffe69ec5b497 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 234 248 3.5E-17 T 12-10-2018 AMJ96_CH01390 c3215d1cd5a27bdced73ffe69ec5b497 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 3.5E-17 T 12-10-2018 AMJ96_CH01390 c3215d1cd5a27bdced73ffe69ec5b497 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 3.5E-17 T 12-10-2018 AMJ96_CH01091 be2db9c85a7e5b8171caa6bde3af2dd9 653 Pfam PF00009 Elongation factor Tu GTP binding domain 51 248 1.7E-7 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01091 be2db9c85a7e5b8171caa6bde3af2dd9 653 Gene3D G3DSA:3.30.70.240 556 629 1.0E-61 T 12-10-2018 AMJ96_CH01091 be2db9c85a7e5b8171caa6bde3af2dd9 653 SMART SM00838 552 642 2.0E-4 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like AMJ96_CH01091 be2db9c85a7e5b8171caa6bde3af2dd9 653 Gene3D G3DSA:3.30.230.10 437 640 1.0E-61 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMJ96_CH01091 be2db9c85a7e5b8171caa6bde3af2dd9 653 SMART SM00889 433 550 4.1E-56 T 12-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMJ96_CH01091 be2db9c85a7e5b8171caa6bde3af2dd9 653 Pfam PF03764 Elongation factor G, domain IV 435 548 4.7E-39 T 12-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMJ96_CH01091 be2db9c85a7e5b8171caa6bde3af2dd9 653 Gene3D G3DSA:3.30.70.870 358 432 4.3E-8 T 12-10-2018 AMJ96_CH01091 be2db9c85a7e5b8171caa6bde3af2dd9 653 Pfam PF00679 Elongation factor G C-terminus 552 640 3.7E-16 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like AMJ96_CH01091 be2db9c85a7e5b8171caa6bde3af2dd9 653 SUPERFAMILY SSF52540 1 249 2.86E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01091 be2db9c85a7e5b8171caa6bde3af2dd9 653 SUPERFAMILY SSF54211 435 548 9.61E-36 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_CH01091 be2db9c85a7e5b8171caa6bde3af2dd9 653 SUPERFAMILY SSF54980 552 643 8.15E-13 T 12-10-2018 IPR035647 EF-G domain III/V-like AMJ96_CH01091 be2db9c85a7e5b8171caa6bde3af2dd9 653 Gene3D G3DSA:3.40.50.300 4 304 2.0E-31 T 12-10-2018 AMJ96_CH01091 be2db9c85a7e5b8171caa6bde3af2dd9 653 Gene3D G3DSA:3.40.50.300 9 247 2.0E-31 T 12-10-2018 AMJ96_CH01091 be2db9c85a7e5b8171caa6bde3af2dd9 653 SUPERFAMILY SSF54980 358 432 2.23E-9 T 12-10-2018 IPR035647 EF-G domain III/V-like AMJ96_CH02818 9d1f84e2c449173b94b29b5620756533 97 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 76 87 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMJ96_CH02818 9d1f84e2c449173b94b29b5620756533 97 SUPERFAMILY SSF54862 16 93 5.76E-16 T 12-10-2018 AMJ96_CH02818 9d1f84e2c449173b94b29b5620756533 97 Gene3D G3DSA:3.30.70.20 15 95 6.1E-14 T 12-10-2018 AMJ96_CH02818 9d1f84e2c449173b94b29b5620756533 97 Pfam PF13534 4Fe-4S dicluster domain 23 89 5.4E-7 T 12-10-2018 AMJ96_PD00214 eed78d7568f19caca0efbc3459d77e88 309 Pfam PF01148 Cytidylyltransferase family 44 305 4.5E-58 T 12-10-2018 AMJ96_CH03834 5ce74f657fd753b59492e4c14543c669 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 218 2.2E-15 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH03834 5ce74f657fd753b59492e4c14543c669 225 Gene3D G3DSA:3.40.50.12740 1 128 2.0E-37 T 12-10-2018 AMJ96_CH03834 5ce74f657fd753b59492e4c14543c669 225 SUPERFAMILY SSF52172 2 172 1.31E-38 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH03834 5ce74f657fd753b59492e4c14543c669 225 SMART SM00862 145 218 1.7E-14 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH03834 5ce74f657fd753b59492e4c14543c669 225 SMART SM00448 1 112 6.6E-36 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03834 5ce74f657fd753b59492e4c14543c669 225 Gene3D G3DSA:1.10.10.10 129 223 2.1E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03834 5ce74f657fd753b59492e4c14543c669 225 Pfam PF00072 Response regulator receiver domain 3 112 5.5E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02504 f4473bf2101badc6c45aad2c37374156 162 SUPERFAMILY SSF46785 1 91 1.6E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02504 f4473bf2101badc6c45aad2c37374156 162 SUPERFAMILY SSF54909 63 149 2.15E-20 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH02504 f4473bf2101badc6c45aad2c37374156 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 2.4E-15 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH02504 f4473bf2101badc6c45aad2c37374156 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 2.4E-15 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH02504 f4473bf2101badc6c45aad2c37374156 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 2.4E-15 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH02504 f4473bf2101badc6c45aad2c37374156 162 Gene3D G3DSA:3.30.70.920 54 137 4.5E-26 T 12-10-2018 AMJ96_CH02504 f4473bf2101badc6c45aad2c37374156 162 SMART SM00344 1 110 9.6E-46 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMJ96_CH02504 f4473bf2101badc6c45aad2c37374156 162 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 2.9E-19 T 12-10-2018 AMJ96_CH02504 f4473bf2101badc6c45aad2c37374156 162 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 12-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AMJ96_CH02504 f4473bf2101badc6c45aad2c37374156 162 Pfam PF01037 Lrp/AsnC ligand binding domain 67 140 5.0E-21 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMJ96_CH02504 f4473bf2101badc6c45aad2c37374156 162 Gene3D G3DSA:1.10.10.10 1 53 3.9E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00397 d8cb404e59f6bfb725cad38b6afb246c 309 Gene3D G3DSA:3.40.50.2300 127 301 4.3E-68 T 12-10-2018 AMJ96_PD00397 d8cb404e59f6bfb725cad38b6afb246c 309 Pfam PF13407 Periplasmic binding protein domain 23 284 3.8E-46 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_PD00397 d8cb404e59f6bfb725cad38b6afb246c 309 SUPERFAMILY SSF53822 22 305 2.67E-70 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PD00397 d8cb404e59f6bfb725cad38b6afb246c 309 Gene3D G3DSA:3.40.50.2300 23 294 4.3E-68 T 12-10-2018 AMJ96_CH02295 c40b7b6548ebb6e92d19386a2675affe 217 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 93 181 2.7E-12 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH02295 c40b7b6548ebb6e92d19386a2675affe 217 SUPERFAMILY SSF56784 2 215 2.27E-50 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_CH02295 c40b7b6548ebb6e92d19386a2675affe 217 Gene3D G3DSA:1.10.150.240 16 83 4.1E-47 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMJ96_CH02295 c40b7b6548ebb6e92d19386a2675affe 217 Gene3D G3DSA:3.40.50.1000 5 205 4.1E-47 T 12-10-2018 IPR023214 HAD superfamily AMJ96_CH02295 c40b7b6548ebb6e92d19386a2675affe 217 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 187 7.7E-29 T 12-10-2018 AMJ96_CH00540 ef8ef757ce73fc2c564fc559d2064228 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 59 1.0E-11 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00540 ef8ef757ce73fc2c564fc559d2064228 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 1.5E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00540 ef8ef757ce73fc2c564fc559d2064228 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 1.5E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00540 ef8ef757ce73fc2c564fc559d2064228 195 Gene3D G3DSA:1.10.10.60 5 51 1.9E-15 T 12-10-2018 AMJ96_CH00540 ef8ef757ce73fc2c564fc559d2064228 195 SUPERFAMILY SSF46689 2 84 1.03E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH00540 ef8ef757ce73fc2c564fc559d2064228 195 Gene3D G3DSA:1.10.357.10 52 186 3.4E-31 T 12-10-2018 AMJ96_CH00540 ef8ef757ce73fc2c564fc559d2064228 195 SUPERFAMILY SSF48498 81 184 4.3E-23 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH02669 02ea46113d9928f233616b1884c96bb8 209 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 39 128 1.1E-8 T 12-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMJ96_CH02669 02ea46113d9928f233616b1884c96bb8 209 SUPERFAMILY SSF50475 37 167 1.46E-11 T 12-10-2018 AMJ96_CH02669 02ea46113d9928f233616b1884c96bb8 209 Gene3D G3DSA:2.30.110.10 29 156 3.1E-14 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMJ96_CH03757 9e0111043cc1acd5e54501ba16f9c957 343 Pfam PF00691 OmpA family 227 334 4.7E-18 T 12-10-2018 IPR006665 OmpA-like domain AMJ96_CH03757 9e0111043cc1acd5e54501ba16f9c957 343 Gene3D G3DSA:3.30.1330.60 179 343 3.2E-47 T 12-10-2018 IPR036737 OmpA-like domain superfamily AMJ96_CH03757 9e0111043cc1acd5e54501ba16f9c957 343 SUPERFAMILY SSF103088 217 340 4.45E-30 T 12-10-2018 IPR036737 OmpA-like domain superfamily AMJ96_CH00059 394a39aefd440b82da891c8949580f30 315 Gene3D G3DSA:3.40.50.720 122 295 1.5E-92 T 12-10-2018 AMJ96_CH00059 394a39aefd440b82da891c8949580f30 315 PIRSF PIRSF001439 1 315 1.3E-71 T 12-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 AMJ96_CH00059 394a39aefd440b82da891c8949580f30 315 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 3 314 5.7E-70 T 12-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 AMJ96_CH00059 394a39aefd440b82da891c8949580f30 315 Gene3D G3DSA:3.30.1780.10 4 310 1.5E-92 T 12-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 AMJ96_CH00059 394a39aefd440b82da891c8949580f30 315 SUPERFAMILY SSF51735 1 311 1.08E-94 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02991 693fc4ed0bd80d2c9c7dfcc91f8f1b94 243 Pfam PF03591 AzlC protein 16 155 2.7E-32 T 12-10-2018 IPR011606 Branched-chain amino acid transport, permease AMJ96_PC00024 b214cd73f04d3a5b916a5aa5ffe05c5f 205 SUPERFAMILY SSF52218 1 194 1.37E-26 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_PC00024 b214cd73f04d3a5b916a5aa5ffe05c5f 205 Gene3D G3DSA:3.40.50.360 1 199 2.0E-18 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_PC00024 b214cd73f04d3a5b916a5aa5ffe05c5f 205 Pfam PF03358 NADPH-dependent FMN reductase 4 161 3.3E-24 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMJ96_PA00236 d2eec44967cb2fb9f5c1bd63ce572a53 114 Pfam PF01042 Endoribonuclease L-PSP 10 113 3.9E-24 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 AMJ96_PA00236 d2eec44967cb2fb9f5c1bd63ce572a53 114 SUPERFAMILY SSF55298 3 113 3.77E-29 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMJ96_PA00236 d2eec44967cb2fb9f5c1bd63ce572a53 114 Gene3D G3DSA:3.30.1330.40 1 114 7.5E-39 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMJ96_CH02303 723d31b26afce478fb3d9059f830348e 120 SUPERFAMILY SSF51230 2 118 2.36E-40 T 12-10-2018 IPR011053 Single hybrid motif AMJ96_CH02303 723d31b26afce478fb3d9059f830348e 120 Gene3D G3DSA:2.40.50.100 1 120 7.2E-45 T 12-10-2018 AMJ96_CH02303 723d31b26afce478fb3d9059f830348e 120 Pfam PF01597 Glycine cleavage H-protein 2 118 5.5E-41 T 12-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate AMJ96_CH02303 723d31b26afce478fb3d9059f830348e 120 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 42 71 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMJ96_CH02303 723d31b26afce478fb3d9059f830348e 120 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 1 120 37.672 T 12-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 AMJ96_CH02303 723d31b26afce478fb3d9059f830348e 120 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 2 119 4.5E-41 T 12-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 AMJ96_PC00011 4a65e7deb32a038253624f66fe0537d7 1822 Gene3D G3DSA:2.60.40.1930 596 695 6.5E-5 T 12-10-2018 AMJ96_PC00011 4a65e7deb32a038253624f66fe0537d7 1822 SMART SM01360 1158 1247 3.1E-28 T 12-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 AMJ96_PC00011 4a65e7deb32a038253624f66fe0537d7 1822 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 953 1097 5.1E-17 T 12-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 AMJ96_PC00011 4a65e7deb32a038253624f66fe0537d7 1822 Gene3D G3DSA:1.25.40.10 146 294 2.3E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_PC00011 4a65e7deb32a038253624f66fe0537d7 1822 SUPERFAMILY SSF48452 159 249 1.06E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_PC00011 4a65e7deb32a038253624f66fe0537d7 1822 Gene3D G3DSA:3.50.4.10 32 102 3.1E-9 T 12-10-2018 AMJ96_PC00011 4a65e7deb32a038253624f66fe0537d7 1822 Pfam PF00207 Alpha-2-macroglobulin family 1161 1238 4.6E-8 T 12-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 AMJ96_PC00011 4a65e7deb32a038253624f66fe0537d7 1822 PIRSF PIRSF038980 44 1822 0.0 T 12-10-2018 IPR026284 Alpha-2-macroglobulin domain protein, bacteria AMJ96_PC00011 4a65e7deb32a038253624f66fe0537d7 1822 Pfam PF00024 PAN domain 33 89 2.1E-8 T 12-10-2018 IPR003609 PAN/Apple domain AMJ96_PC00011 4a65e7deb32a038253624f66fe0537d7 1822 SMART SM01359 953 1097 6.0E-42 T 12-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 AMJ96_PC00011 4a65e7deb32a038253624f66fe0537d7 1822 SUPERFAMILY SSF48239 1360 1611 1.41E-46 T 12-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AMJ96_PC00011 4a65e7deb32a038253624f66fe0537d7 1822 SUPERFAMILY SSF57414 39 83 5.89E-6 T 12-10-2018 AMJ96_PC00011 4a65e7deb32a038253624f66fe0537d7 1822 SMART SM00223 33 101 0.006 T 12-10-2018 IPR000177 Apple domain GO:0005515|GO:0005576|GO:0006508 Reactome: R-HSA-140837 AMJ96_PC00011 4a65e7deb32a038253624f66fe0537d7 1822 Gene3D G3DSA:1.50.10.20 1357 1615 3.6E-28 T 12-10-2018 AMJ96_PC00011 4a65e7deb32a038253624f66fe0537d7 1822 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 489 590 4.8E-27 T 12-10-2018 AMJ96_PC00011 4a65e7deb32a038253624f66fe0537d7 1822 Pfam PF01835 MG2 domain 597 691 2.9E-23 T 12-10-2018 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 AMJ96_CH02478 46996433fb5ecdea89b8b936d9a3669a 690 Gene3D G3DSA:2.60.120.260 543 689 1.2E-20 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily AMJ96_CH02478 46996433fb5ecdea89b8b936d9a3669a 690 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 106 277 5.4E-12 T 12-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 AMJ96_CH02478 46996433fb5ecdea89b8b936d9a3669a 690 Gene3D G3DSA:3.40.30.10 359 527 1.6E-45 T 12-10-2018 AMJ96_CH02478 46996433fb5ecdea89b8b936d9a3669a 690 Pfam PF00578 AhpC/TSA family 376 495 8.7E-13 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMJ96_CH02478 46996433fb5ecdea89b8b936d9a3669a 690 SUPERFAMILY SSF52833 371 512 1.11E-35 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH03681 905ca8edaf28fd976ac70ed05dc582f0 390 SUPERFAMILY SSF53822 22 371 1.21E-76 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH03681 905ca8edaf28fd976ac70ed05dc582f0 390 Gene3D G3DSA:3.40.50.2300 139 366 2.9E-115 T 12-10-2018 AMJ96_CH03681 905ca8edaf28fd976ac70ed05dc582f0 390 Gene3D G3DSA:3.40.50.2300 23 355 2.9E-115 T 12-10-2018 AMJ96_CH03681 905ca8edaf28fd976ac70ed05dc582f0 390 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 85 95 3.4E-7 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_CH03681 905ca8edaf28fd976ac70ed05dc582f0 390 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 23 39 3.4E-7 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_CH03681 905ca8edaf28fd976ac70ed05dc582f0 390 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 332 347 3.4E-7 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_CH03681 905ca8edaf28fd976ac70ed05dc582f0 390 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 277 290 3.4E-7 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_CH03681 905ca8edaf28fd976ac70ed05dc582f0 390 Pfam PF13458 Periplasmic binding protein 22 363 4.0E-62 T 12-10-2018 IPR028081 Leucine-binding protein domain AMJ96_CH03298 becda849412e3f411c2662b6ef96c7d7 307 Pfam PF01522 Polysaccharide deacetylase 78 164 2.3E-8 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMJ96_CH03298 becda849412e3f411c2662b6ef96c7d7 307 Gene3D G3DSA:3.20.20.370 1 306 3.4E-97 T 12-10-2018 AMJ96_CH03298 becda849412e3f411c2662b6ef96c7d7 307 TIGRFAM TIGR03212 uraD_N-term-dom: putative urate catabolism protein 6 303 1.3E-159 T 12-10-2018 IPR017625 PuuE allantoinase/chitin deacetylase 1 AMJ96_CH03298 becda849412e3f411c2662b6ef96c7d7 307 SUPERFAMILY SSF88713 6 303 1.51E-86 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMJ96_PC00316 0e25b50dd32907aac63f7765f742e508 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 52 75 1.5E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PC00316 0e25b50dd32907aac63f7765f742e508 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 44 1.5E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PC00316 0e25b50dd32907aac63f7765f742e508 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 31 74 5.3E-14 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PC00316 0e25b50dd32907aac63f7765f742e508 207 SUPERFAMILY SSF46689 23 91 2.64E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PC00316 0e25b50dd32907aac63f7765f742e508 207 Gene3D G3DSA:1.10.357.10 19 206 2.1E-45 T 12-10-2018 AMJ96_PC00316 0e25b50dd32907aac63f7765f742e508 207 SUPERFAMILY SSF48498 98 203 2.67E-9 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH02934 6bbd0933535218ba0f3b07ddeb68eb74 230 SUPERFAMILY SSF46955 41 154 1.72E-19 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily AMJ96_CH02934 6bbd0933535218ba0f3b07ddeb68eb74 230 Pfam PF13411 MerR HTH family regulatory protein 41 105 2.3E-13 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH02934 6bbd0933535218ba0f3b07ddeb68eb74 230 SUPERFAMILY SSF46894 162 228 1.8E-10 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH02934 6bbd0933535218ba0f3b07ddeb68eb74 230 Pfam PF00196 Bacterial regulatory proteins, luxR family 166 221 2.0E-6 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH02934 6bbd0933535218ba0f3b07ddeb68eb74 230 Gene3D G3DSA:1.10.10.10 160 229 7.2E-10 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02934 6bbd0933535218ba0f3b07ddeb68eb74 230 Gene3D G3DSA:1.10.1660.10 36 158 8.5E-21 T 12-10-2018 AMJ96_CH02934 6bbd0933535218ba0f3b07ddeb68eb74 230 SMART SM00422 39 106 4.6E-10 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH02934 6bbd0933535218ba0f3b07ddeb68eb74 230 SMART SM00421 165 222 0.0029 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH02290 2b425b37804278932026f535f1ffe2d9 104 Pfam PF00893 Small Multidrug Resistance protein 1 93 2.6E-28 T 12-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AMJ96_CH02290 2b425b37804278932026f535f1ffe2d9 104 SUPERFAMILY SSF103481 5 102 6.54E-19 T 12-10-2018 AMJ96_CH02290 2b425b37804278932026f535f1ffe2d9 104 Gene3D G3DSA:1.10.3730.20 1 104 2.0E-31 T 12-10-2018 AMJ96_CH00083 858fb2f840c5e885195ef950680b4c5d 225 SUPERFAMILY SSF48498 100 223 1.33E-31 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH00083 858fb2f840c5e885195ef950680b4c5d 225 SUPERFAMILY SSF46689 20 103 5.49E-21 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH00083 858fb2f840c5e885195ef950680b4c5d 225 Pfam PF00440 Bacterial regulatory proteins, tetR family 33 77 2.6E-16 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00083 858fb2f840c5e885195ef950680b4c5d 225 Gene3D G3DSA:1.10.357.10 29 225 1.2E-61 T 12-10-2018 AMJ96_CH00083 858fb2f840c5e885195ef950680b4c5d 225 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 54 77 3.4E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00083 858fb2f840c5e885195ef950680b4c5d 225 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 46 3.4E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PC00229 2ba008f4054374f157b31fa25dcb0149 491 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 45 67 2.9E-7 T 12-10-2018 AMJ96_PC00229 2ba008f4054374f157b31fa25dcb0149 491 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 185 194 2.9E-7 T 12-10-2018 AMJ96_PC00229 2ba008f4054374f157b31fa25dcb0149 491 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 227 252 2.9E-7 T 12-10-2018 AMJ96_PC00229 2ba008f4054374f157b31fa25dcb0149 491 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 47 261 4.7E-14 T 12-10-2018 AMJ96_PC00229 2ba008f4054374f157b31fa25dcb0149 491 Gene3D G3DSA:3.50.50.60 35 386 3.6E-42 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00229 2ba008f4054374f157b31fa25dcb0149 491 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 182 200 3.6E-7 T 12-10-2018 AMJ96_PC00229 2ba008f4054374f157b31fa25dcb0149 491 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 46 65 3.6E-7 T 12-10-2018 AMJ96_PC00229 2ba008f4054374f157b31fa25dcb0149 491 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 227 245 3.6E-7 T 12-10-2018 AMJ96_PC00229 2ba008f4054374f157b31fa25dcb0149 491 SUPERFAMILY SSF51905 45 364 6.85E-28 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00439 fbe42ee9cb417e43ba181e578e3a712d 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_PC00439 fbe42ee9cb417e43ba181e578e3a712d 244 SUPERFAMILY SSF51735 1 244 1.38E-69 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00439 fbe42ee9cb417e43ba181e578e3a712d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.0E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00439 fbe42ee9cb417e43ba181e578e3a712d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 3.0E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00439 fbe42ee9cb417e43ba181e578e3a712d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 3.0E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00439 fbe42ee9cb417e43ba181e578e3a712d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 3.0E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00439 fbe42ee9cb417e43ba181e578e3a712d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 3.0E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00439 fbe42ee9cb417e43ba181e578e3a712d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 3.0E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00439 fbe42ee9cb417e43ba181e578e3a712d 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 2.2E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00439 fbe42ee9cb417e43ba181e578e3a712d 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 2.2E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00439 fbe42ee9cb417e43ba181e578e3a712d 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 2.2E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00439 fbe42ee9cb417e43ba181e578e3a712d 244 Gene3D G3DSA:3.40.50.720 2 244 1.8E-74 T 12-10-2018 AMJ96_PC00439 fbe42ee9cb417e43ba181e578e3a712d 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 243 5.1E-56 T 12-10-2018 AMJ96_CH03706 c6452715c4c4ecffc6aa19f554bb439f 406 Gene3D G3DSA:3.40.50.720 2 302 1.9E-152 T 12-10-2018 AMJ96_CH03706 c6452715c4c4ecffc6aa19f554bb439f 406 Gene3D G3DSA:3.90.25.10 217 374 1.9E-152 T 12-10-2018 AMJ96_CH03706 c6452715c4c4ecffc6aa19f554bb439f 406 SUPERFAMILY SSF51735 1 366 1.85E-58 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03706 c6452715c4c4ecffc6aa19f554bb439f 406 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 289 6.6E-25 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_PC00237 1e1376defbe9fbedcba682ca4c93f5b8 213 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 31 191 1.4E-38 T 12-10-2018 IPR005273 Uracil-DNA glycosylase family 4 AMJ96_PC00237 1e1376defbe9fbedcba682ca4c93f5b8 213 SUPERFAMILY SSF52141 19 196 1.93E-53 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_PC00237 1e1376defbe9fbedcba682ca4c93f5b8 213 TIGRFAM TIGR03914 UDG_fam_dom: uracil-DNA glycosylase family domain 16 206 6.0E-88 T 12-10-2018 IPR005273 Uracil-DNA glycosylase family 4 AMJ96_PC00237 1e1376defbe9fbedcba682ca4c93f5b8 213 SMART SM00987 45 205 1.3E-33 T 12-10-2018 AMJ96_PC00237 1e1376defbe9fbedcba682ca4c93f5b8 213 SMART SM00986 45 205 1.3E-33 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_PC00237 1e1376defbe9fbedcba682ca4c93f5b8 213 Gene3D G3DSA:3.40.470.10 12 212 2.7E-60 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_PC00237 1e1376defbe9fbedcba682ca4c93f5b8 213 Pfam PF03167 Uracil DNA glycosylase superfamily 45 202 1.1E-38 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_CH01154 3190b4cdb76ca11170678673ae480d0d 313 Gene3D G3DSA:2.115.10.20 131 311 1.5E-17 T 12-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily AMJ96_CH01154 3190b4cdb76ca11170678673ae480d0d 313 SUPERFAMILY SSF75005 125 300 4.85E-15 T 12-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily AMJ96_CH01541 7d2cfb2892b3e5081c95ac837d75604e 596 Pfam PF02938 GAD domain 314 407 2.5E-8 T 12-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 AMJ96_CH01541 7d2cfb2892b3e5081c95ac837d75604e 596 Pfam PF00152 tRNA synthetases class II (D, K and N) 122 563 1.3E-89 T 12-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH01541 7d2cfb2892b3e5081c95ac837d75604e 596 SUPERFAMILY SSF55261 295 425 1.8E-31 T 12-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 AMJ96_CH01541 7d2cfb2892b3e5081c95ac837d75604e 596 Gene3D G3DSA:2.40.50.140 1 106 3.5E-35 T 12-10-2018 AMJ96_CH01541 7d2cfb2892b3e5081c95ac837d75604e 596 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 4 590 28.847 T 12-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 AMJ96_CH01541 7d2cfb2892b3e5081c95ac837d75604e 596 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 5 588 3.7E-180 T 12-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 AMJ96_CH01541 7d2cfb2892b3e5081c95ac837d75604e 596 SUPERFAMILY SSF50249 4 107 1.68E-31 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH01541 7d2cfb2892b3e5081c95ac837d75604e 596 PRINTS PR01042 Aspartyl-tRNA synthetase signature 194 206 3.1E-21 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH01541 7d2cfb2892b3e5081c95ac837d75604e 596 PRINTS PR01042 Aspartyl-tRNA synthetase signature 480 496 3.1E-21 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH01541 7d2cfb2892b3e5081c95ac837d75604e 596 PRINTS PR01042 Aspartyl-tRNA synthetase signature 211 224 3.1E-21 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH01541 7d2cfb2892b3e5081c95ac837d75604e 596 PRINTS PR01042 Aspartyl-tRNA synthetase signature 524 538 3.1E-21 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH01541 7d2cfb2892b3e5081c95ac837d75604e 596 Gene3D G3DSA:3.30.930.10 122 588 2.9E-159 T 12-10-2018 AMJ96_CH01541 7d2cfb2892b3e5081c95ac837d75604e 596 SUPERFAMILY SSF55681 115 589 1.83E-92 T 12-10-2018 AMJ96_CH01541 7d2cfb2892b3e5081c95ac837d75604e 596 Gene3D G3DSA:3.30.1360.30 278 425 2.9E-159 T 12-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 AMJ96_CH01541 7d2cfb2892b3e5081c95ac837d75604e 596 Pfam PF01336 OB-fold nucleic acid binding domain 21 104 2.3E-17 T 12-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AMJ96_CH01548 30d1e04e8e3e312b61d4ad27ae93a7b1 337 SMART SM01004 12 334 5.6E-214 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMJ96_CH01548 30d1e04e8e3e312b61d4ad27ae93a7b1 337 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 253 265 - T 12-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMJ96_CH01548 30d1e04e8e3e312b61d4ad27ae93a7b1 337 Pfam PF00490 Delta-aminolevulinic acid dehydratase 15 332 3.9E-130 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMJ96_CH01548 30d1e04e8e3e312b61d4ad27ae93a7b1 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 200 219 3.5E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMJ96_CH01548 30d1e04e8e3e312b61d4ad27ae93a7b1 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 132 146 3.5E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMJ96_CH01548 30d1e04e8e3e312b61d4ad27ae93a7b1 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 253 269 3.5E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMJ96_CH01548 30d1e04e8e3e312b61d4ad27ae93a7b1 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 162 181 3.5E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMJ96_CH01548 30d1e04e8e3e312b61d4ad27ae93a7b1 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 308 327 3.5E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMJ96_CH01548 30d1e04e8e3e312b61d4ad27ae93a7b1 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 278 293 3.5E-56 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMJ96_CH01548 30d1e04e8e3e312b61d4ad27ae93a7b1 337 Gene3D G3DSA:3.20.20.70 2 337 8.7E-131 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH01548 30d1e04e8e3e312b61d4ad27ae93a7b1 337 SUPERFAMILY SSF51569 12 335 2.2E-131 T 12-10-2018 AMJ96_CH01548 30d1e04e8e3e312b61d4ad27ae93a7b1 337 PIRSF PIRSF001415 7 337 1.9E-136 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AMJ96_CH00418 8a4a0f5ceda3932fee63b68920f60cd4 99 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 2 92 1.9E-40 T 12-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 AMJ96_CH00418 8a4a0f5ceda3932fee63b68920f60cd4 99 Pfam PF00216 Bacterial DNA-binding protein 3 91 2.9E-29 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMJ96_CH00418 8a4a0f5ceda3932fee63b68920f60cd4 99 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 28.741 T 12-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 AMJ96_CH00418 8a4a0f5ceda3932fee63b68920f60cd4 99 SUPERFAMILY SSF47729 3 91 8.54E-29 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMJ96_CH00418 8a4a0f5ceda3932fee63b68920f60cd4 99 SMART SM00411 1 91 1.6E-38 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMJ96_CH00418 8a4a0f5ceda3932fee63b68920f60cd4 99 Gene3D G3DSA:4.10.520.10 1 93 1.7E-31 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMJ96_CH00418 8a4a0f5ceda3932fee63b68920f60cd4 99 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 12-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AMJ96_CH00418 8a4a0f5ceda3932fee63b68920f60cd4 99 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 1.3E-16 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMJ96_CH00418 8a4a0f5ceda3932fee63b68920f60cd4 99 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 1.3E-16 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMJ96_CH00418 8a4a0f5ceda3932fee63b68920f60cd4 99 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 1.3E-16 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMJ96_PD00151 59a8b8e2f280258b8f66362cd0246d50 334 Gene3D G3DSA:3.40.50.300 7 334 6.0E-101 T 12-10-2018 AMJ96_PD00151 59a8b8e2f280258b8f66362cd0246d50 334 Pfam PF00005 ABC transporter 30 187 4.0E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00151 59a8b8e2f280258b8f66362cd0246d50 334 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00151 59a8b8e2f280258b8f66362cd0246d50 334 SUPERFAMILY SSF52540 9 258 5.19E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00151 59a8b8e2f280258b8f66362cd0246d50 334 SMART SM00382 38 237 6.5E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00151 59a8b8e2f280258b8f66362cd0246d50 334 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 238 325 3.0E-23 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PD00151 59a8b8e2f280258b8f66362cd0246d50 334 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 239 304 7.9E-19 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PB00305 b159e3d4bc4512e1e5eca209fb86621d 369 Pfam PF01012 Electron transfer flavoprotein domain 32 212 3.5E-41 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMJ96_PB00305 b159e3d4bc4512e1e5eca209fb86621d 369 SMART SM00893 32 223 8.4E-45 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMJ96_PB00305 b159e3d4bc4512e1e5eca209fb86621d 369 PIRSF PIRSF000089 28 360 4.4E-99 T 12-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 AMJ96_PB00305 b159e3d4bc4512e1e5eca209fb86621d 369 SUPERFAMILY SSF52467 236 354 9.27E-43 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMJ96_PB00305 b159e3d4bc4512e1e5eca209fb86621d 369 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 236 317 1.0E-33 T 12-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 AMJ96_PB00305 b159e3d4bc4512e1e5eca209fb86621d 369 Gene3D G3DSA:3.40.50.620 24 224 1.6E-62 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_PB00305 b159e3d4bc4512e1e5eca209fb86621d 369 SUPERFAMILY SSF52402 31 225 2.23E-49 T 12-10-2018 AMJ96_PB00305 b159e3d4bc4512e1e5eca209fb86621d 369 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 299 325 - T 12-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 AMJ96_PB00305 b159e3d4bc4512e1e5eca209fb86621d 369 Gene3D G3DSA:3.40.50.1220 230 364 5.7E-48 T 12-10-2018 AMJ96_PD00570 b561ac4483478c4548a441935931cb38 1008 SUPERFAMILY SSF88713 242 513 5.34E-68 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMJ96_PD00570 b561ac4483478c4548a441935931cb38 1008 Pfam PF09261 Alpha mannosidase middle domain 515 591 6.1E-21 T 12-10-2018 IPR015341 Glycoside hydrolase family 38, central domain GO:0004559|GO:0006013 AMJ96_PD00570 b561ac4483478c4548a441935931cb38 1008 SUPERFAMILY SSF74650 601 1006 1.82E-75 T 12-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 AMJ96_PD00570 b561ac4483478c4548a441935931cb38 1008 SMART SM00872 515 591 3.3E-26 T 12-10-2018 IPR015341 Glycoside hydrolase family 38, central domain GO:0004559|GO:0006013 AMJ96_PD00570 b561ac4483478c4548a441935931cb38 1008 SUPERFAMILY SSF88688 514 612 8.17E-20 T 12-10-2018 IPR028995 Glycoside hydrolase families 57/38, central domain superfamily AMJ96_PD00570 b561ac4483478c4548a441935931cb38 1008 Pfam PF07748 Glycosyl hydrolases family 38 C-terminal domain 675 1002 1.0E-63 T 12-10-2018 IPR011682 Glycosyl hydrolase family 38, C-terminal GO:0004559|GO:0006013 AMJ96_PD00570 b561ac4483478c4548a441935931cb38 1008 Gene3D G3DSA:2.70.98.30 669 912 9.1E-16 T 12-10-2018 AMJ96_PD00570 b561ac4483478c4548a441935931cb38 1008 Gene3D G3DSA:1.20.1270.50 518 613 1.9E-22 T 12-10-2018 IPR037094 Glycoside hydrolase family 38, central domain superfamily GO:0004559|GO:0006013 AMJ96_PD00570 b561ac4483478c4548a441935931cb38 1008 Gene3D G3DSA:3.20.110.10 244 515 1.3E-58 T 12-10-2018 IPR027291 Glycoside hydrolase 38, N-terminal domain superfamily AMJ96_PD00570 b561ac4483478c4548a441935931cb38 1008 Pfam PF01074 Glycosyl hydrolases family 38 N-terminal domain 248 508 7.2E-77 T 12-10-2018 IPR000602 Glycoside hydrolase family 38, N-terminal domain GO:0004559|GO:0006013 AMJ96_CH01966 c0f332299c81f9d98d262071f60e6687 277 SMART SM00971 22 126 9.8E-57 T 12-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 AMJ96_CH01966 c0f332299c81f9d98d262071f60e6687 277 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 95 255 2.0E-66 T 12-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 AMJ96_CH01966 c0f332299c81f9d98d262071f60e6687 277 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 206 240 1.3E-6 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH01966 c0f332299c81f9d98d262071f60e6687 277 SUPERFAMILY SSF51161 21 272 3.88E-64 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily AMJ96_CH01966 c0f332299c81f9d98d262071f60e6687 277 Pfam PF06426 Serine acetyltransferase, N-terminal 22 126 1.0E-34 T 12-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 AMJ96_CH01966 c0f332299c81f9d98d262071f60e6687 277 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 215 243 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMJ96_CH01966 c0f332299c81f9d98d262071f60e6687 277 Gene3D G3DSA:2.160.10.10 156 275 6.1E-36 T 12-10-2018 AMJ96_CH01966 c0f332299c81f9d98d262071f60e6687 277 Gene3D G3DSA:1.10.3130.10 9 155 2.7E-48 T 12-10-2018 AMJ96_PA00098 37fb215c0de582e262cfbb8b13ec3255 328 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 227 317 2.1E-24 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PA00098 37fb215c0de582e262cfbb8b13ec3255 328 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PA00098 37fb215c0de582e262cfbb8b13ec3255 328 Gene3D G3DSA:3.40.50.300 3 326 1.7E-99 T 12-10-2018 AMJ96_PA00098 37fb215c0de582e262cfbb8b13ec3255 328 SUPERFAMILY SSF52540 5 249 1.46E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00098 37fb215c0de582e262cfbb8b13ec3255 328 Pfam PF00005 ABC transporter 26 177 1.9E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00098 37fb215c0de582e262cfbb8b13ec3255 328 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 229 296 7.7E-18 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PA00098 37fb215c0de582e262cfbb8b13ec3255 328 SMART SM00382 34 227 2.1E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00056 92cdd8037ef59314f230c10b749fd6be 175 Pfam PF08281 Sigma-70, region 4 115 165 2.4E-11 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_PD00056 92cdd8037ef59314f230c10b749fd6be 175 SUPERFAMILY SSF88946 15 101 9.22E-23 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_PD00056 92cdd8037ef59314f230c10b749fd6be 175 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 18 165 1.9E-22 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMJ96_PD00056 92cdd8037ef59314f230c10b749fd6be 175 SUPERFAMILY SSF88659 109 170 4.05E-11 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_PD00056 92cdd8037ef59314f230c10b749fd6be 175 Gene3D G3DSA:1.10.1740.10 9 92 8.8E-24 T 12-10-2018 AMJ96_PD00056 92cdd8037ef59314f230c10b749fd6be 175 Gene3D G3DSA:1.10.10.10 112 171 9.1E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00056 92cdd8037ef59314f230c10b749fd6be 175 Pfam PF04542 Sigma-70 region 2 27 89 1.6E-16 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_PD00056 92cdd8037ef59314f230c10b749fd6be 175 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 44 75 - T 12-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_CH01151 a09f6ae12118c448c8645b199ca46c20 315 Gene3D G3DSA:3.90.550.10 2 188 4.1E-29 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH01151 a09f6ae12118c448c8645b199ca46c20 315 Pfam PF00535 Glycosyl transferase family 2 9 139 3.3E-25 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_CH01151 a09f6ae12118c448c8645b199ca46c20 315 SUPERFAMILY SSF53448 6 181 1.89E-31 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00369 88aae511324f75da12a353af3048b989 296 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 295 3.5E-75 T 12-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 AMJ96_CH00369 88aae511324f75da12a353af3048b989 296 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 296 42.766 T 12-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 AMJ96_CH00369 88aae511324f75da12a353af3048b989 296 ProSitePatterns PS01242 Zinc finger FPG-type signature. 269 295 - T 12-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 AMJ96_CH00369 88aae511324f75da12a353af3048b989 296 SMART SM01232 148 246 1.5E-40 T 12-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMJ96_CH00369 88aae511324f75da12a353af3048b989 296 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 148 243 1.8E-20 T 12-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AMJ96_CH00369 88aae511324f75da12a353af3048b989 296 Gene3D G3DSA:1.10.8.50 158 296 6.2E-44 T 12-10-2018 AMJ96_CH00369 88aae511324f75da12a353af3048b989 296 SUPERFAMILY SSF46946 148 242 1.91E-26 T 12-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AMJ96_CH00369 88aae511324f75da12a353af3048b989 296 SMART SM00898 2 132 1.1E-58 T 12-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMJ96_CH00369 88aae511324f75da12a353af3048b989 296 SUPERFAMILY SSF81624 2 155 2.75E-35 T 12-10-2018 IPR035937 MutM-like, N-terminal AMJ96_CH00369 88aae511324f75da12a353af3048b989 296 SUPERFAMILY SSF57716 242 296 3.99E-14 T 12-10-2018 AMJ96_CH00369 88aae511324f75da12a353af3048b989 296 Pfam PF06827 Zinc finger found in FPG and IleRS 266 296 1.6E-7 T 12-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 AMJ96_CH00369 88aae511324f75da12a353af3048b989 296 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 131 2.7E-34 T 12-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AMJ96_CH00369 88aae511324f75da12a353af3048b989 296 Gene3D G3DSA:3.20.190.10 1 149 9.1E-38 T 12-10-2018 IPR035937 MutM-like, N-terminal AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 SUPERFAMILY SSF81665 196 445 1.44E-15 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 189 738 2.0E-162 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 Gene3D G3DSA:2.70.150.20 244 355 2.3E-30 T 12-10-2018 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 170 738 1.1E-164 T 12-10-2018 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 SUPERFAMILY SSF56784 449 736 1.72E-39 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 Gene3D G3DSA:3.40.1110.10 462 568 8.2E-61 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 Pfam PF00702 haloacid dehalogenase-like hydrolase 448 649 1.0E-34 T 12-10-2018 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 451 465 2.7E-19 T 12-10-2018 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 583 593 2.7E-19 T 12-10-2018 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 301 315 2.7E-19 T 12-10-2018 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 636 655 2.7E-19 T 12-10-2018 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 659 671 2.7E-19 T 12-10-2018 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 Pfam PF00403 Heavy-metal-associated domain 40 103 8.7E-9 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 453 459 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 Pfam PF00122 E1-E2 ATPase 259 431 3.8E-46 T 12-10-2018 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 219 738 6.5E-110 T 12-10-2018 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 223 720 3.5E-70 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 SUPERFAMILY SSF55008 31 109 6.15E-15 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 PRINTS PR00943 Copper-transporting ATPase signature 613 630 2.6E-7 T 12-10-2018 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 PRINTS PR00943 Copper-transporting ATPase signature 240 258 2.6E-7 T 12-10-2018 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 PRINTS PR00943 Copper-transporting ATPase signature 52 66 2.6E-7 T 12-10-2018 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 PRINTS PR00943 Copper-transporting ATPase signature 220 239 2.6E-7 T 12-10-2018 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 PRINTS PR00943 Copper-transporting ATPase signature 374 388 2.6E-7 T 12-10-2018 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 PRINTS PR00943 Copper-transporting ATPase signature 670 684 2.6E-7 T 12-10-2018 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 SUPERFAMILY SSF81653 259 351 2.22E-20 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 ProSitePatterns PS01047 Heavy-metal-associated domain. 42 71 - T 12-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 Gene3D G3DSA:3.40.50.1000 432 687 8.2E-61 T 12-10-2018 IPR023214 HAD superfamily AMJ96_PA00125 c4ebfa399b9662f72380faaacdd90973 760 Gene3D G3DSA:3.30.70.100 39 108 2.2E-13 T 12-10-2018 AMJ96_PD00524 67cd05304b47902166b5348ce3f9df08 241 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 195 211 3.8E-5 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00524 67cd05304b47902166b5348ce3f9df08 241 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 211 223 3.8E-5 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00524 67cd05304b47902166b5348ce3f9df08 241 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 195 3.8E-5 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00524 67cd05304b47902166b5348ce3f9df08 241 SMART SM00421 178 235 1.7E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00524 67cd05304b47902166b5348ce3f9df08 241 SUPERFAMILY SSF75516 8 172 2.75E-42 T 12-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily AMJ96_PD00524 67cd05304b47902166b5348ce3f9df08 241 SUPERFAMILY SSF46894 172 240 1.09E-13 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_PD00524 67cd05304b47902166b5348ce3f9df08 241 Gene3D G3DSA:1.10.10.10 180 241 2.5E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00524 67cd05304b47902166b5348ce3f9df08 241 Pfam PF00196 Bacterial regulatory proteins, luxR family 181 234 5.9E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00524 67cd05304b47902166b5348ce3f9df08 241 Gene3D G3DSA:3.30.450.80 6 170 1.2E-32 T 12-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily AMJ96_PD00524 67cd05304b47902166b5348ce3f9df08 241 Pfam PF03472 Autoinducer binding domain 21 166 5.2E-37 T 12-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain AMJ96_CH02560 3b35bde664dec93eb1a4980d4631c968 596 Gene3D G3DSA:1.10.3080.10 31 442 1.4E-65 T 12-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 AMJ96_CH02560 3b35bde664dec93eb1a4980d4631c968 596 SUPERFAMILY SSF81340 19 451 2.22E-82 T 12-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 AMJ96_CH02560 3b35bde664dec93eb1a4980d4631c968 596 PRINTS PR00762 Chloride channel signature 396 415 3.2E-10 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AMJ96_CH02560 3b35bde664dec93eb1a4980d4631c968 596 PRINTS PR00762 Chloride channel signature 344 364 3.2E-10 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AMJ96_CH02560 3b35bde664dec93eb1a4980d4631c968 596 PRINTS PR00762 Chloride channel signature 181 200 3.2E-10 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AMJ96_CH02560 3b35bde664dec93eb1a4980d4631c968 596 PRINTS PR00762 Chloride channel signature 378 394 3.2E-10 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AMJ96_CH02560 3b35bde664dec93eb1a4980d4631c968 596 Gene3D G3DSA:3.10.580.10 457 590 5.7E-8 T 12-10-2018 AMJ96_CH02560 3b35bde664dec93eb1a4980d4631c968 596 Pfam PF00654 Voltage gated chloride channel 89 428 9.5E-62 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AMJ96_CH02560 3b35bde664dec93eb1a4980d4631c968 596 SUPERFAMILY SSF54631 459 587 1.77E-9 T 12-10-2018 AMJ96_PD00283 800c8b877cf271413eca531dccf7ad0e 219 TIGRFAM TIGR03003 ectoine_ehuD: ectoine/hydroxyectoine ABC transporter, permease protein EhuD 3 214 9.1E-105 T 12-10-2018 IPR014341 Ectoine/hydroxyectoine ABC transporter, permease protein EhuD AMJ96_PD00283 800c8b877cf271413eca531dccf7ad0e 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 109 3.1E-29 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_PD00283 800c8b877cf271413eca531dccf7ad0e 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 214 4.4E-21 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00283 800c8b877cf271413eca531dccf7ad0e 219 SUPERFAMILY SSF161098 13 200 4.58E-43 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00283 800c8b877cf271413eca531dccf7ad0e 219 Gene3D G3DSA:1.10.3720.10 1 218 4.5E-56 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03060 3bef109857c9f555675535c44403f85d 290 Pfam PF01380 SIS domain 133 259 6.5E-22 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMJ96_CH03060 3bef109857c9f555675535c44403f85d 290 SUPERFAMILY SSF46689 8 80 5.73E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03060 3bef109857c9f555675535c44403f85d 290 Gene3D G3DSA:3.40.50.10490 100 284 9.9E-29 T 12-10-2018 AMJ96_CH03060 3bef109857c9f555675535c44403f85d 290 Pfam PF01418 Helix-turn-helix domain, rpiR family 10 79 4.8E-15 T 12-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AMJ96_CH03060 3bef109857c9f555675535c44403f85d 290 SUPERFAMILY SSF53697 101 261 6.47E-19 T 12-10-2018 AMJ96_CH03060 3bef109857c9f555675535c44403f85d 290 Gene3D G3DSA:1.10.10.10 3 82 4.0E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00159 00d5126d9719fbbdf77281f23591f635 632 Gene3D G3DSA:1.20.1740.10 46 468 3.3E-20 T 12-10-2018 AMJ96_PD00159 00d5126d9719fbbdf77281f23591f635 632 Pfam PF13520 Amino acid permease 62 430 1.4E-24 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03752 ec0a105397028ce9b67b1eff9a7fb032 609 SMART SM00382 377 563 5.1E-21 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03752 ec0a105397028ce9b67b1eff9a7fb032 609 Gene3D G3DSA:3.40.50.300 343 596 2.7E-94 T 12-10-2018 AMJ96_CH03752 ec0a105397028ce9b67b1eff9a7fb032 609 Pfam PF00664 ABC transporter transmembrane region 35 298 8.4E-58 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_CH03752 ec0a105397028ce9b67b1eff9a7fb032 609 SUPERFAMILY SSF90123 20 332 1.31E-78 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH03752 ec0a105397028ce9b67b1eff9a7fb032 609 ProSitePatterns PS00211 ABC transporters family signature. 489 503 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03752 ec0a105397028ce9b67b1eff9a7fb032 609 Gene3D G3DSA:1.20.1560.10 14 337 5.7E-84 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH03752 ec0a105397028ce9b67b1eff9a7fb032 609 Pfam PF00005 ABC transporter 368 517 9.1E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03752 ec0a105397028ce9b67b1eff9a7fb032 609 TIGRFAM TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein 14 588 8.5E-271 T 12-10-2018 IPR011918 ABC transporter, ATP-binding/permease protein AMJ96_CH03752 ec0a105397028ce9b67b1eff9a7fb032 609 SUPERFAMILY SSF52540 342 588 7.78E-91 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01076 2e1ebb23359c0888e09cdf59db9762ea 476 Gene3D G3DSA:3.30.70.1230 19 189 2.4E-23 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH01076 2e1ebb23359c0888e09cdf59db9762ea 476 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 24 176 1.4E-9 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH01076 2e1ebb23359c0888e09cdf59db9762ea 476 Gene3D G3DSA:1.25.40.10 389 476 2.0E-19 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01076 2e1ebb23359c0888e09cdf59db9762ea 476 SUPERFAMILY SSF48452 213 471 1.23E-39 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01076 2e1ebb23359c0888e09cdf59db9762ea 476 Gene3D G3DSA:1.25.40.10 190 314 9.5E-21 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01076 2e1ebb23359c0888e09cdf59db9762ea 476 SMART SM00028 207 240 160.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH01076 2e1ebb23359c0888e09cdf59db9762ea 476 SMART SM00028 410 443 0.0014 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH01076 2e1ebb23359c0888e09cdf59db9762ea 476 SMART SM00028 275 308 0.0025 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH01076 2e1ebb23359c0888e09cdf59db9762ea 476 SMART SM00028 241 274 0.029 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH01076 2e1ebb23359c0888e09cdf59db9762ea 476 SMART SM00028 343 376 0.028 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH01076 2e1ebb23359c0888e09cdf59db9762ea 476 SMART SM00028 309 342 12.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH01076 2e1ebb23359c0888e09cdf59db9762ea 476 SMART SM00028 377 409 220.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH01076 2e1ebb23359c0888e09cdf59db9762ea 476 Pfam PF13431 Tetratricopeptide repeat 229 260 5.0E-5 T 12-10-2018 AMJ96_CH01076 2e1ebb23359c0888e09cdf59db9762ea 476 Gene3D G3DSA:1.25.40.10 315 388 1.4E-16 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01076 2e1ebb23359c0888e09cdf59db9762ea 476 SUPERFAMILY SSF55073 22 177 4.55E-24 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH01076 2e1ebb23359c0888e09cdf59db9762ea 476 Pfam PF13432 Tetratricopeptide repeat 327 375 0.01 T 12-10-2018 AMJ96_CH01076 2e1ebb23359c0888e09cdf59db9762ea 476 Pfam PF13432 Tetratricopeptide repeat 387 444 6.9E-8 T 12-10-2018 AMJ96_CH01076 2e1ebb23359c0888e09cdf59db9762ea 476 Pfam PF13432 Tetratricopeptide repeat 279 319 0.014 T 12-10-2018 AMJ96_PC00136 0ee1137f8a8853d04e19a0ae89da9c3c 862 SUPERFAMILY SSF81901 675 791 8.24E-21 T 12-10-2018 AMJ96_PC00136 0ee1137f8a8853d04e19a0ae89da9c3c 862 Pfam PF08238 Sel1 repeat 724 757 3.2E-5 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_PC00136 0ee1137f8a8853d04e19a0ae89da9c3c 862 Pfam PF08238 Sel1 repeat 687 720 5.5E-8 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_PC00136 0ee1137f8a8853d04e19a0ae89da9c3c 862 Pfam PF08238 Sel1 repeat 614 649 1.3E-5 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_PC00136 0ee1137f8a8853d04e19a0ae89da9c3c 862 Pfam PF08238 Sel1 repeat 651 683 0.0018 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_PC00136 0ee1137f8a8853d04e19a0ae89da9c3c 862 SUPERFAMILY SSF81901 532 693 6.37E-25 T 12-10-2018 AMJ96_PC00136 0ee1137f8a8853d04e19a0ae89da9c3c 862 SUPERFAMILY SSF52129 29 270 2.84E-51 T 12-10-2018 IPR029030 Caspase-like domain superfamily AMJ96_PC00136 0ee1137f8a8853d04e19a0ae89da9c3c 862 Gene3D G3DSA:1.25.40.10 541 843 1.7E-55 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_PC00136 0ee1137f8a8853d04e19a0ae89da9c3c 862 Pfam PF00656 Caspase domain 41 268 2.0E-32 T 12-10-2018 AMJ96_PC00136 0ee1137f8a8853d04e19a0ae89da9c3c 862 Gene3D G3DSA:3.40.50.1460 29 271 3.5E-56 T 12-10-2018 AMJ96_PC00136 0ee1137f8a8853d04e19a0ae89da9c3c 862 SMART SM00671 578 613 4.2 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_PC00136 0ee1137f8a8853d04e19a0ae89da9c3c 862 SMART SM00671 686 721 7.5E-10 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_PC00136 0ee1137f8a8853d04e19a0ae89da9c3c 862 SMART SM00671 650 685 0.72 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_PC00136 0ee1137f8a8853d04e19a0ae89da9c3c 862 SMART SM00671 614 649 3.0E-5 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_PC00136 0ee1137f8a8853d04e19a0ae89da9c3c 862 SMART SM00671 722 757 2.1E-7 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH00810 2583f27e3694a65133ca890a174c317a 316 Gene3D G3DSA:3.90.25.10 170 305 1.2E-105 T 12-10-2018 AMJ96_CH00810 2583f27e3694a65133ca890a174c317a 316 Pfam PF01370 NAD dependent epimerase/dehydratase family 9 239 1.2E-75 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_CH00810 2583f27e3694a65133ca890a174c317a 316 Gene3D G3DSA:3.40.50.720 9 296 1.2E-105 T 12-10-2018 AMJ96_CH00810 2583f27e3694a65133ca890a174c317a 316 SUPERFAMILY SSF51735 4 311 5.52E-81 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00810 2583f27e3694a65133ca890a174c317a 316 Hamap MF_00956 GDP-L-fucose synthase [fcl]. 6 307 48.826 T 12-10-2018 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase GO:0009226|GO:0016491 KEGG: 00051+1.1.1.271|KEGG: 00520+1.1.1.271|MetaCyc: PWY-66|Reactome: R-HSA-6787639 AMJ96_PA00191 b1946f25fd1d9c15a78547cda311983e 261 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 17 60 2.8E-6 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_PA00191 b1946f25fd1d9c15a78547cda311983e 261 Gene3D G3DSA:1.10.260.40 10 62 5.5E-6 T 12-10-2018 AMJ96_PA00191 b1946f25fd1d9c15a78547cda311983e 261 SMART SM00530 7 61 1.2E-4 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_PA00191 b1946f25fd1d9c15a78547cda311983e 261 SUPERFAMILY SSF47413 16 61 7.88E-7 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH00466 cb33e2c5f1afe5a6034b91e57538f1b9 222 Pfam PF13649 Methyltransferase domain 49 146 1.5E-9 T 12-10-2018 AMJ96_CH00466 cb33e2c5f1afe5a6034b91e57538f1b9 222 SUPERFAMILY SSF53335 13 164 6.14E-20 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH00466 cb33e2c5f1afe5a6034b91e57538f1b9 222 Gene3D G3DSA:3.40.50.150 23 203 9.0E-16 T 12-10-2018 AMJ96_CH00353 a988cc7b6c726b7d1b28c30fc7b07901 225 SMART SM00345 13 72 8.3E-18 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH00353 a988cc7b6c726b7d1b28c30fc7b07901 225 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 72 9.7E-19 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH00353 a988cc7b6c726b7d1b28c30fc7b07901 225 Pfam PF07729 FCD domain 94 212 1.8E-21 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH00353 a988cc7b6c726b7d1b28c30fc7b07901 225 Gene3D G3DSA:1.10.10.10 3 78 9.5E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00353 a988cc7b6c726b7d1b28c30fc7b07901 225 SMART SM00895 92 214 1.8E-17 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH00353 a988cc7b6c726b7d1b28c30fc7b07901 225 SUPERFAMILY SSF46785 2 76 1.64E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00353 a988cc7b6c726b7d1b28c30fc7b07901 225 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 6.3E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH00353 a988cc7b6c726b7d1b28c30fc7b07901 225 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 6.3E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH00353 a988cc7b6c726b7d1b28c30fc7b07901 225 Gene3D G3DSA:1.20.120.530 86 221 1.9E-23 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH00353 a988cc7b6c726b7d1b28c30fc7b07901 225 SUPERFAMILY SSF48008 89 219 8.63E-22 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00062 3d872046ea51ee70a5a8cc7beeacfd93 242 SUPERFAMILY SSF51206 10 132 6.94E-13 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like AMJ96_PD00062 3d872046ea51ee70a5a8cc7beeacfd93 242 Gene3D G3DSA:2.60.120.10 7 136 2.9E-8 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PD00062 3d872046ea51ee70a5a8cc7beeacfd93 242 Pfam PF13545 Crp-like helix-turn-helix domain 151 217 5.8E-11 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00062 3d872046ea51ee70a5a8cc7beeacfd93 242 Gene3D G3DSA:1.10.10.10 146 219 4.7E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00062 3d872046ea51ee70a5a8cc7beeacfd93 242 SUPERFAMILY SSF46785 149 221 3.74E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00224 900681baf67d08ef892d40b8790278f3 277 SUPERFAMILY SSF56655 14 274 2.36E-64 T 12-10-2018 AMJ96_PD00224 900681baf67d08ef892d40b8790278f3 277 Gene3D G3DSA:3.30.540.10 11 154 9.9E-37 T 12-10-2018 AMJ96_PD00224 900681baf67d08ef892d40b8790278f3 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 73 89 2.4E-40 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_PD00224 900681baf67d08ef892d40b8790278f3 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 194 215 2.4E-40 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_PD00224 900681baf67d08ef892d40b8790278f3 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 95 111 2.4E-40 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_PD00224 900681baf67d08ef892d40b8790278f3 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 144 167 2.4E-40 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_PD00224 900681baf67d08ef892d40b8790278f3 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 51 71 2.4E-40 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_PD00224 900681baf67d08ef892d40b8790278f3 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 225 249 2.4E-40 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_PD00224 900681baf67d08ef892d40b8790278f3 277 PRINTS PR01959 SuhB family inositol monophosphatase signature 215 227 3.8E-6 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 AMJ96_PD00224 900681baf67d08ef892d40b8790278f3 277 PRINTS PR01959 SuhB family inositol monophosphatase signature 118 137 3.8E-6 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 AMJ96_PD00224 900681baf67d08ef892d40b8790278f3 277 Gene3D G3DSA:3.40.190.80 155 276 9.7E-30 T 12-10-2018 AMJ96_PD00224 900681baf67d08ef892d40b8790278f3 277 Pfam PF00459 Inositol monophosphatase family 17 269 9.0E-46 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH04003 9b533371f710b0a1bbe4df6355df830b 85 PRINTS PR00160 Glutaredoxin signature 47 60 5.1E-15 T 12-10-2018 IPR014025 Glutaredoxin subgroup AMJ96_CH04003 9b533371f710b0a1bbe4df6355df830b 85 PRINTS PR00160 Glutaredoxin signature 4 22 5.1E-15 T 12-10-2018 IPR014025 Glutaredoxin subgroup AMJ96_CH04003 9b533371f710b0a1bbe4df6355df830b 85 PRINTS PR00160 Glutaredoxin signature 61 74 5.1E-15 T 12-10-2018 IPR014025 Glutaredoxin subgroup AMJ96_CH04003 9b533371f710b0a1bbe4df6355df830b 85 Gene3D G3DSA:3.40.30.10 1 85 7.1E-27 T 12-10-2018 AMJ96_CH04003 9b533371f710b0a1bbe4df6355df830b 85 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 83 2.5E-35 T 12-10-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 AMJ96_CH04003 9b533371f710b0a1bbe4df6355df830b 85 SUPERFAMILY SSF52833 3 84 3.34E-27 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH04003 9b533371f710b0a1bbe4df6355df830b 85 Pfam PF00462 Glutaredoxin 4 64 4.5E-18 T 12-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AMJ96_PA00118 a5ef715999b5ae9bb943e9ba6b62fa62 404 Pfam PF00155 Aminotransferase class I and II 46 390 4.9E-82 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_PA00118 a5ef715999b5ae9bb943e9ba6b62fa62 404 TIGRFAM TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase 1 401 1.9E-211 T 12-10-2018 IPR010961 Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase GO:0003870|GO:0030170|GO:0033014 KEGG: 00260+2.3.1.37|KEGG: 00860+2.3.1.37|MetaCyc: PWY-5189|MetaCyc: PWY-7536|Reactome: R-HSA-189451 AMJ96_PA00118 a5ef715999b5ae9bb943e9ba6b62fa62 404 SUPERFAMILY SSF53383 3 396 1.48E-113 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_PA00118 a5ef715999b5ae9bb943e9ba6b62fa62 404 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 244 253 - T 12-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 AMJ96_PA00118 a5ef715999b5ae9bb943e9ba6b62fa62 404 Gene3D G3DSA:3.90.1150.10 14 387 5.1E-167 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_PA00118 a5ef715999b5ae9bb943e9ba6b62fa62 404 Gene3D G3DSA:3.40.640.10 62 297 5.1E-167 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH04355 16be08253235fc16efde126baca89f7c 344 Gene3D G3DSA:3.40.50.720 5 330 2.4E-137 T 12-10-2018 AMJ96_CH04355 16be08253235fc16efde126baca89f7c 344 SUPERFAMILY SSF51735 3 157 6.68E-50 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH04355 16be08253235fc16efde126baca89f7c 344 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 4 333 4.4E-141 T 12-10-2018 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMJ96_CH04355 16be08253235fc16efde126baca89f7c 344 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 139 318 5.5E-53 T 12-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMJ96_CH04355 16be08253235fc16efde126baca89f7c 344 SMART SM00859 4 119 4.4E-36 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMJ96_CH04355 16be08253235fc16efde126baca89f7c 344 SUPERFAMILY SSF55347 129 319 7.6E-74 T 12-10-2018 AMJ96_CH04355 16be08253235fc16efde126baca89f7c 344 PIRSF PIRSF000148 2 337 5.6E-128 T 12-10-2018 AMJ96_CH04355 16be08253235fc16efde126baca89f7c 344 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 4 118 2.0E-29 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMJ96_CH04355 16be08253235fc16efde126baca89f7c 344 Gene3D G3DSA:3.30.360.10 128 315 2.4E-137 T 12-10-2018 AMJ96_CH04355 16be08253235fc16efde126baca89f7c 344 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 2 332 35.477 T 12-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMJ96_CH02515 5b2e65271d957fb810be4637166cc016 242 Gene3D G3DSA:3.40.50.720 1 241 1.8E-55 T 12-10-2018 AMJ96_CH02515 5b2e65271d957fb810be4637166cc016 242 SUPERFAMILY SSF51735 1 241 6.2E-55 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02515 5b2e65271d957fb810be4637166cc016 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 1.1E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02515 5b2e65271d957fb810be4637166cc016 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 1.1E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02515 5b2e65271d957fb810be4637166cc016 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 1.1E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02515 5b2e65271d957fb810be4637166cc016 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 1.1E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02515 5b2e65271d957fb810be4637166cc016 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 1.1E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02515 5b2e65271d957fb810be4637166cc016 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.1E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02515 5b2e65271d957fb810be4637166cc016 242 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 238 1.7E-39 T 12-10-2018 AMJ96_PB00062 1f4fa4c6780e629822b10b7a6e8ea61f 233 Pfam PF01872 RibD C-terminal domain 4 219 2.8E-20 T 12-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMJ96_PB00062 1f4fa4c6780e629822b10b7a6e8ea61f 233 SUPERFAMILY SSF53597 2 230 5.74E-35 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMJ96_PB00062 1f4fa4c6780e629822b10b7a6e8ea61f 233 Gene3D G3DSA:3.40.430.10 2 231 6.2E-39 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMJ96_PA00187 a36ed217441604dbfcfed91f3ccf7aef 529 Gene3D G3DSA:3.10.105.10 283 498 1.3E-91 T 12-10-2018 AMJ96_PA00187 a36ed217441604dbfcfed91f3ccf7aef 529 SUPERFAMILY SSF53850 47 511 5.97E-112 T 12-10-2018 AMJ96_PA00187 a36ed217441604dbfcfed91f3ccf7aef 529 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 104 126 - T 12-10-2018 IPR023765 Solute-binding protein family 5, conserved site AMJ96_PA00187 a36ed217441604dbfcfed91f3ccf7aef 529 PIRSF PIRSF002741 22 522 4.4E-65 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_PA00187 a36ed217441604dbfcfed91f3ccf7aef 529 Gene3D G3DSA:3.40.190.10 208 508 1.3E-91 T 12-10-2018 AMJ96_PA00187 a36ed217441604dbfcfed91f3ccf7aef 529 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 100 445 3.2E-72 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_PA00187 a36ed217441604dbfcfed91f3ccf7aef 529 Gene3D G3DSA:3.90.76.10 67 207 1.3E-91 T 12-10-2018 AMJ96_CH00808 964a2357a7a4badc77e7fc1a001d6a4b 351 Gene3D G3DSA:3.40.50.720 2 322 4.2E-128 T 12-10-2018 AMJ96_CH00808 964a2357a7a4badc77e7fc1a001d6a4b 351 Pfam PF16363 GDP-mannose 4,6 dehydratase 3 323 6.8E-96 T 12-10-2018 IPR016040 NAD(P)-binding domain AMJ96_CH00808 964a2357a7a4badc77e7fc1a001d6a4b 351 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 337 9.7E-151 T 12-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 AMJ96_CH00808 964a2357a7a4badc77e7fc1a001d6a4b 351 SUPERFAMILY SSF51735 2 334 2.16E-86 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00808 964a2357a7a4badc77e7fc1a001d6a4b 351 Gene3D G3DSA:3.90.25.10 200 330 4.2E-128 T 12-10-2018 AMJ96_CH02487 f93be72c7eb2f9743c354b14b5bf43a5 228 SUPERFAMILY SSF47616 85 210 3.13E-25 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMJ96_CH02487 f93be72c7eb2f9743c354b14b5bf43a5 228 Pfam PF13417 Glutathione S-transferase, N-terminal domain 5 82 1.1E-9 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMJ96_CH02487 f93be72c7eb2f9743c354b14b5bf43a5 228 Gene3D G3DSA:3.40.30.10 5 200 8.3E-44 T 12-10-2018 AMJ96_CH02487 f93be72c7eb2f9743c354b14b5bf43a5 228 Pfam PF00043 Glutathione S-transferase, C-terminal domain 106 197 2.3E-11 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMJ96_CH02487 f93be72c7eb2f9743c354b14b5bf43a5 228 Gene3D G3DSA:1.20.1050.10 85 196 8.3E-44 T 12-10-2018 AMJ96_CH02487 f93be72c7eb2f9743c354b14b5bf43a5 228 SUPERFAMILY SSF52833 1 107 3.49E-19 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH03971 5534113e05592845d0da088112d8c5be 324 Gene3D G3DSA:1.10.620.20 2 296 5.1E-112 T 12-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 AMJ96_CH03971 5534113e05592845d0da088112d8c5be 324 Pfam PF00268 Ribonucleotide reductase, small chain 14 285 1.1E-83 T 12-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMJ96_CH03971 5534113e05592845d0da088112d8c5be 324 SUPERFAMILY SSF47240 9 324 1.03E-103 T 12-10-2018 IPR009078 Ferritin-like superfamily AMJ96_CH03971 5534113e05592845d0da088112d8c5be 324 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 102 118 - T 12-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMJ96_CH03971 5534113e05592845d0da088112d8c5be 324 TIGRFAM TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit 12 324 6.6E-144 T 12-10-2018 IPR026494 Ribonucleoside reductase subunit beta, NrdF GO:0005971|GO:0009263 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMJ96_CH03971 5534113e05592845d0da088112d8c5be 324 PIRSF PIRSF000355 2 321 2.2E-80 T 12-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMJ96_CH02559 9d051b410c63e19bd121cc690562c123 169 PIRSF PIRSF006135 2 169 6.0E-55 T 12-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 AMJ96_CH02559 9d051b410c63e19bd121cc690562c123 169 SUPERFAMILY SSF52540 4 168 8.36E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02559 9d051b410c63e19bd121cc690562c123 169 Gene3D G3DSA:3.40.50.300 3 168 2.6E-55 T 12-10-2018 AMJ96_CH02559 9d051b410c63e19bd121cc690562c123 169 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 4 167 1.2E-60 T 12-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 AMJ96_PD00076 11e5748c05fb10181fa61385a2e6ccdf 344 Pfam PF00107 Zinc-binding dehydrogenase 180 305 5.2E-22 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_PD00076 11e5748c05fb10181fa61385a2e6ccdf 344 SUPERFAMILY SSF50129 4 179 1.98E-46 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_PD00076 11e5748c05fb10181fa61385a2e6ccdf 344 SUPERFAMILY SSF51735 147 310 3.38E-32 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00076 11e5748c05fb10181fa61385a2e6ccdf 344 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 139 9.7E-29 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_PD00076 11e5748c05fb10181fa61385a2e6ccdf 344 Gene3D G3DSA:3.90.180.10 11 329 7.0E-98 T 12-10-2018 AMJ96_PD00076 11e5748c05fb10181fa61385a2e6ccdf 344 SMART SM00829 12 342 0.0018 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_PD00076 11e5748c05fb10181fa61385a2e6ccdf 344 Gene3D G3DSA:3.40.50.720 157 291 7.0E-98 T 12-10-2018 AMJ96_PD00076 11e5748c05fb10181fa61385a2e6ccdf 344 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 63 77 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMJ96_CH03064 a35220c8f6e7f22832c6ac288ce41b5e 353 SUPERFAMILY SSF52540 4 244 9.94E-89 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03064 a35220c8f6e7f22832c6ac288ce41b5e 353 Pfam PF00005 ABC transporter 19 161 2.8E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03064 a35220c8f6e7f22832c6ac288ce41b5e 353 Gene3D G3DSA:3.40.50.300 3 221 4.3E-68 T 12-10-2018 AMJ96_CH03064 a35220c8f6e7f22832c6ac288ce41b5e 353 Gene3D G3DSA:2.40.50.140 283 343 5.2E-13 T 12-10-2018 AMJ96_CH03064 a35220c8f6e7f22832c6ac288ce41b5e 353 SMART SM00382 28 211 4.6E-20 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03064 a35220c8f6e7f22832c6ac288ce41b5e 353 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03064 a35220c8f6e7f22832c6ac288ce41b5e 353 Pfam PF08402 TOBE domain 276 350 2.3E-10 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_CH03064 a35220c8f6e7f22832c6ac288ce41b5e 353 SUPERFAMILY SSF50331 237 349 2.25E-11 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH03064 a35220c8f6e7f22832c6ac288ce41b5e 353 Gene3D G3DSA:2.40.50.940 222 347 5.2E-13 T 12-10-2018 AMJ96_CH02231 2fbb573cca1c7004cf513ee804416779 630 SUPERFAMILY SSF109998 40 297 5.89E-22 T 12-10-2018 IPR027304 Trigger factor/SurA domain superfamily AMJ96_CH02231 2fbb573cca1c7004cf513ee804416779 630 Gene3D G3DSA:3.10.50.40 268 357 4.0E-8 T 12-10-2018 AMJ96_CH02231 2fbb573cca1c7004cf513ee804416779 630 Pfam PF13145 PPIC-type PPIASE domain 248 369 3.0E-23 T 12-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 AMJ96_CH02231 2fbb573cca1c7004cf513ee804416779 630 Pfam PF13624 SurA N-terminal domain 1 164 2.6E-38 T 12-10-2018 AMJ96_CH02231 2fbb573cca1c7004cf513ee804416779 630 SUPERFAMILY SSF54534 221 354 5.57E-5 T 12-10-2018 AMJ96_CH02231 2fbb573cca1c7004cf513ee804416779 630 Gene3D G3DSA:1.10.4030.30 224 369 4.0E-8 T 12-10-2018 AMJ96_CH01559 01fbe18107d10226bf55efe1a3e0cc89 151 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 10 144 1.5E-29 T 12-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMJ96_CH01559 01fbe18107d10226bf55efe1a3e0cc89 151 Gene3D G3DSA:3.40.50.960 2 151 1.3E-49 T 12-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMJ96_CH01559 01fbe18107d10226bf55efe1a3e0cc89 151 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 2 149 24.05 T 12-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMJ96_CH01559 01fbe18107d10226bf55efe1a3e0cc89 151 SUPERFAMILY SSF52121 7 149 1.44E-47 T 12-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMJ96_CH01559 01fbe18107d10226bf55efe1a3e0cc89 151 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 8 146 1.6E-43 T 12-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMJ96_PD00423 1eb34d382e33af87dc7a83e2d9b05766 80 SUPERFAMILY SSF143120 4 46 4.58E-9 T 12-10-2018 IPR036165 YefM-like superfamily AMJ96_PD00423 1eb34d382e33af87dc7a83e2d9b05766 80 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 5 39 5.7E-8 T 12-10-2018 AMJ96_PD00423 1eb34d382e33af87dc7a83e2d9b05766 80 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 4 55 6.8E-10 T 12-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM AMJ96_PD00423 1eb34d382e33af87dc7a83e2d9b05766 80 Gene3D G3DSA:3.40.1620.10 1 39 1.9E-8 T 12-10-2018 AMJ96_CH02634 953a6fc8499877c3769c485f1fdd3898 392 SMART SM00034 244 386 1.4E-6 T 12-10-2018 IPR001304 C-type lectin-like AMJ96_CH02634 953a6fc8499877c3769c485f1fdd3898 392 SUPERFAMILY SSF55073 3 173 6.12E-44 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02634 953a6fc8499877c3769c485f1fdd3898 392 SUPERFAMILY SSF56436 255 376 8.05E-16 T 12-10-2018 IPR016187 C-type lectin fold AMJ96_CH02634 953a6fc8499877c3769c485f1fdd3898 392 Gene3D G3DSA:3.30.70.1230 1 181 5.5E-53 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02634 953a6fc8499877c3769c485f1fdd3898 392 Gene3D G3DSA:3.10.100.10 244 386 5.9E-18 T 12-10-2018 IPR016186 C-type lectin-like/link domain superfamily AMJ96_CH02634 953a6fc8499877c3769c485f1fdd3898 392 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 6 167 2.5E-13 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH01488 58d4044697532debbb3d428f12b0eea8 192 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 147 23.37 T 12-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01488 58d4044697532debbb3d428f12b0eea8 192 Gene3D G3DSA:3.10.430.100 60 148 3.8E-22 T 12-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily AMJ96_CH01488 58d4044697532debbb3d428f12b0eea8 192 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 145 2.1E-21 T 12-10-2018 IPR020069 Ribosomal protein L9, C-terminal AMJ96_CH01488 58d4044697532debbb3d428f12b0eea8 192 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 12-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01488 58d4044697532debbb3d428f12b0eea8 192 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 145 8.9E-35 T 12-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01488 58d4044697532debbb3d428f12b0eea8 192 SUPERFAMILY SSF55653 57 146 3.92E-24 T 12-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily AMJ96_CH01488 58d4044697532debbb3d428f12b0eea8 192 Gene3D G3DSA:3.40.5.10 1 50 3.2E-19 T 12-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01488 58d4044697532debbb3d428f12b0eea8 192 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 6.5E-19 T 12-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01488 58d4044697532debbb3d428f12b0eea8 192 SUPERFAMILY SSF55658 1 57 7.85E-16 T 12-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal AMJ96_PC00211 bd85f9d1bac2aad72cfe406eba6deb05 401 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 AMJ96_PC00211 bd85f9d1bac2aad72cfe406eba6deb05 401 SUPERFAMILY SSF53901 277 400 4.75E-40 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_PC00211 bd85f9d1bac2aad72cfe406eba6deb05 401 PIRSF PIRSF000429 1 401 4.6E-129 T 12-10-2018 IPR002155 Thiolase GO:0016747 AMJ96_PC00211 bd85f9d1bac2aad72cfe406eba6deb05 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 AMJ96_PC00211 bd85f9d1bac2aad72cfe406eba6deb05 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 399 4.2E-134 T 12-10-2018 IPR002155 Thiolase GO:0016747 AMJ96_PC00211 bd85f9d1bac2aad72cfe406eba6deb05 401 Gene3D G3DSA:3.40.47.10 141 397 2.5E-149 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_PC00211 bd85f9d1bac2aad72cfe406eba6deb05 401 Pfam PF00108 Thiolase, N-terminal domain 6 268 2.3E-78 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AMJ96_PC00211 bd85f9d1bac2aad72cfe406eba6deb05 401 Gene3D G3DSA:3.40.47.10 6 282 2.5E-149 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_PC00211 bd85f9d1bac2aad72cfe406eba6deb05 401 Pfam PF02803 Thiolase, C-terminal domain 277 400 4.0E-39 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMJ96_PC00211 bd85f9d1bac2aad72cfe406eba6deb05 401 SUPERFAMILY SSF53901 4 276 3.27E-81 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_PC00211 bd85f9d1bac2aad72cfe406eba6deb05 401 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 3 401 1.6E-205 T 12-10-2018 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 AMJ96_PD00544 7065e5507315b3d3ad6504921886ae54 329 Pfam PF13523 Acetyltransferase (GNAT) domain 159 304 2.5E-53 T 12-10-2018 AMJ96_PD00544 7065e5507315b3d3ad6504921886ae54 329 Gene3D G3DSA:3.40.630.30 121 318 1.1E-67 T 12-10-2018 AMJ96_PD00544 7065e5507315b3d3ad6504921886ae54 329 SMART SM01006 156 203 5.0E-13 T 12-10-2018 IPR019432 Siderophore biosynthesis protein, conserved domain AMJ96_PD00544 7065e5507315b3d3ad6504921886ae54 329 SUPERFAMILY SSF55729 124 318 5.04E-64 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH03882 c2f994c11cf3e3ac88259fc03f02ed00 297 Pfam PF03466 LysR substrate binding domain 88 293 3.7E-40 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH03882 c2f994c11cf3e3ac88259fc03f02ed00 297 SUPERFAMILY SSF53850 89 296 4.34E-42 T 12-10-2018 AMJ96_CH03882 c2f994c11cf3e3ac88259fc03f02ed00 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 4.4E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03882 c2f994c11cf3e3ac88259fc03f02ed00 297 Gene3D G3DSA:3.40.190.290 91 293 6.0E-62 T 12-10-2018 AMJ96_CH03882 c2f994c11cf3e3ac88259fc03f02ed00 297 SUPERFAMILY SSF46785 4 86 1.82E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03882 c2f994c11cf3e3ac88259fc03f02ed00 297 Gene3D G3DSA:1.10.10.10 3 89 3.9E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 SUPERFAMILY SSF82693 547 646 9.42E-13 T 12-10-2018 AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 SUPERFAMILY SSF82693 41 132 2.88E-20 T 12-10-2018 AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 SUPERFAMILY SSF82714 182 264 1.28E-12 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 SUPERFAMILY SSF82714 696 783 6.41E-12 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 Gene3D G3DSA:3.30.70.1430 40 793 1.1E-273 T 12-10-2018 AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 Gene3D G3DSA:1.20.1640.10 10 498 1.1E-273 T 12-10-2018 AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 Pfam PF00873 AcrB/AcrD/AcrF family 4 1003 5.2E-224 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 SUPERFAMILY SSF82866 785 1005 7.98E-44 T 12-10-2018 AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 PRINTS PR00702 Acriflavin resistance protein family signature 328 351 1.1E-55 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 PRINTS PR00702 Acriflavin resistance protein family signature 607 621 1.1E-55 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 PRINTS PR00702 Acriflavin resistance protein family signature 436 459 1.1E-55 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.1E-55 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 PRINTS PR00702 Acriflavin resistance protein family signature 355 376 1.1E-55 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.1E-55 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 PRINTS PR00702 Acriflavin resistance protein family signature 461 484 1.1E-55 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 PRINTS PR00702 Acriflavin resistance protein family signature 383 407 1.1E-55 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 SUPERFAMILY SSF82693 138 308 8.37E-10 T 12-10-2018 AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 Gene3D G3DSA:1.20.1640.10 499 1000 1.1E-273 T 12-10-2018 AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 SUPERFAMILY SSF82866 291 488 9.16E-44 T 12-10-2018 AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 Gene3D G3DSA:3.30.70.1320 134 324 1.1E-273 T 12-10-2018 AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 Gene3D G3DSA:3.30.70.1440 647 842 1.1E-273 T 12-10-2018 AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 Gene3D G3DSA:3.30.70.1430 546 646 1.1E-273 T 12-10-2018 AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 Gene3D G3DSA:3.30.2090.10 695 785 1.1E-273 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_PA00071 3a71b049d984f4bd263dc6812f8bec56 1051 Gene3D G3DSA:3.30.2090.10 178 268 1.1E-273 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH01725 2362b8c4303b9bd5b751110dab5bc25c 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 27.679 T 12-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01725 2362b8c4303b9bd5b751110dab5bc25c 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 4.6E-57 T 12-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01725 2362b8c4303b9bd5b751110dab5bc25c 122 SMART SM01374 1 122 3.1E-88 T 12-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01725 2362b8c4303b9bd5b751110dab5bc25c 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 12-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01725 2362b8c4303b9bd5b751110dab5bc25c 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 1.6E-58 T 12-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 AMJ96_CH01725 2362b8c4303b9bd5b751110dab5bc25c 122 SUPERFAMILY SSF50193 1 122 4.32E-53 T 12-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01725 2362b8c4303b9bd5b751110dab5bc25c 122 Gene3D G3DSA:2.40.150.20 1 122 7.0E-56 T 12-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 AMJ96_CH00682 7e25ee2c5043b15d9026f861d1c7f6ee 129 SMART SM00448 7 121 3.7E-33 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00682 7e25ee2c5043b15d9026f861d1c7f6ee 129 SUPERFAMILY SSF52172 5 126 7.4E-34 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH00682 7e25ee2c5043b15d9026f861d1c7f6ee 129 Gene3D G3DSA:3.40.50.2300 1 129 1.7E-35 T 12-10-2018 AMJ96_CH00682 7e25ee2c5043b15d9026f861d1c7f6ee 129 Pfam PF00072 Response regulator receiver domain 9 122 2.7E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00374 07ae77c1b1d033810f8f38be0cc97fe9 1075 Pfam PF00128 Alpha amylase, catalytic domain 638 804 1.5E-4 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_PD00374 07ae77c1b1d033810f8f38be0cc97fe9 1075 SUPERFAMILY SSF51445 603 975 3.83E-83 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_PD00374 07ae77c1b1d033810f8f38be0cc97fe9 1075 SUPERFAMILY SSF51445 27 295 1.93E-11 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_PD00374 07ae77c1b1d033810f8f38be0cc97fe9 1075 Gene3D G3DSA:3.20.20.80 615 978 1.3E-157 T 12-10-2018 AMJ96_PD00374 07ae77c1b1d033810f8f38be0cc97fe9 1075 Gene3D G3DSA:1.20.58.280 520 596 5.5E-54 T 12-10-2018 AMJ96_PD00374 07ae77c1b1d033810f8f38be0cc97fe9 1075 Hamap MF_02124 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase [glgE]. 429 1072 45.841 T 12-10-2018 IPR026585 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase GO:0016757 KEGG: 00500+2.4.99.16|MetaCyc: PWY-7900 AMJ96_PD00374 07ae77c1b1d033810f8f38be0cc97fe9 1075 SMART SM00642 624 954 3.4E-5 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_PD00374 07ae77c1b1d033810f8f38be0cc97fe9 1075 Pfam PF11896 Domain of unknown function (DUF3416) 432 614 1.1E-53 T 12-10-2018 IPR021828 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S GO:0004553 KEGG: 00500+2.4.99.16|MetaCyc: PWY-7900 AMJ96_PD00374 07ae77c1b1d033810f8f38be0cc97fe9 1075 Gene3D G3DSA:2.60.40.10 432 607 5.5E-54 T 12-10-2018 IPR013783 Immunoglobulin-like fold AMJ96_PD00374 07ae77c1b1d033810f8f38be0cc97fe9 1075 Gene3D G3DSA:2.60.40.1180 980 1075 1.0E-19 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta AMJ96_PD00374 07ae77c1b1d033810f8f38be0cc97fe9 1075 Gene3D G3DSA:3.20.20.80 26 319 1.9E-12 T 12-10-2018 AMJ96_CH01636 d345b505d9d461b89995d7680f5d8347 200 SUPERFAMILY SSF143243 7 185 2.62E-63 T 12-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01636 d345b505d9d461b89995d7680f5d8347 200 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 113 134 - T 12-10-2018 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01636 d345b505d9d461b89995d7680f5d8347 200 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 37 152 1.8E-46 T 12-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01636 d345b505d9d461b89995d7680f5d8347 200 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 83 139 4.0E-22 T 12-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01636 d345b505d9d461b89995d7680f5d8347 200 Gene3D G3DSA:3.30.460.80 1 132 2.8E-42 T 12-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01636 d345b505d9d461b89995d7680f5d8347 200 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 34 151 1.2E-45 T 12-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01636 d345b505d9d461b89995d7680f5d8347 200 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 8 160 32.195 T 12-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_PC00152 f591202038df623b20605c84f52e82cb 115 SUPERFAMILY SSF46785 8 102 2.99E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00152 f591202038df623b20605c84f52e82cb 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 45 60 8.5E-5 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_PC00152 f591202038df623b20605c84f52e82cb 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 75 8.5E-5 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_PC00152 f591202038df623b20605c84f52e82cb 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 13 28 8.5E-5 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_PC00152 f591202038df623b20605c84f52e82cb 115 Pfam PF12840 Helix-turn-helix domain 13 69 2.7E-12 T 12-10-2018 AMJ96_PC00152 f591202038df623b20605c84f52e82cb 115 Gene3D G3DSA:1.10.10.10 6 112 6.5E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00152 f591202038df623b20605c84f52e82cb 115 SMART SM00418 11 85 1.9E-5 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH03145 51cd08cf709363d64b22b31a276c8f34 374 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 3 349 1.3E-87 T 12-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AMJ96_CH03145 51cd08cf709363d64b22b31a276c8f34 374 Gene3D G3DSA:3.20.20.70 1 374 3.4E-154 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH03145 51cd08cf709363d64b22b31a276c8f34 374 SUPERFAMILY SSF51395 1 371 9.62E-120 T 12-10-2018 AMJ96_PD00028 c21ea088431ce6a3c3b398160ae00b38 312 Gene3D G3DSA:3.40.50.10330 79 149 1.0E-8 T 12-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 AMJ96_PD00028 c21ea088431ce6a3c3b398160ae00b38 312 SUPERFAMILY SSF111331 73 210 1.96E-17 T 12-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily AMJ96_PD00028 c21ea088431ce6a3c3b398160ae00b38 312 Gene3D G3DSA:2.60.200.30 150 206 1.0E-8 T 12-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AMJ96_CH02373 f016d3903d4122aada2acac14736812b 309 Hamap MF_00313 Glutaminase [glsA]. 4 307 47.107 T 12-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 AMJ96_CH02373 f016d3903d4122aada2acac14736812b 309 Gene3D G3DSA:3.40.710.10 1 309 9.5E-113 T 12-10-2018 AMJ96_CH02373 f016d3903d4122aada2acac14736812b 309 Pfam PF04960 Glutaminase 22 307 3.2E-116 T 12-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 AMJ96_CH02373 f016d3903d4122aada2acac14736812b 309 SUPERFAMILY SSF56601 3 307 2.89E-117 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMJ96_CH02373 f016d3903d4122aada2acac14736812b 309 TIGRFAM TIGR03814 Gln_ase: glutaminase A 8 307 3.6E-129 T 12-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 AMJ96_CH01386 629d0c1836369e47fe658efad11050df 616 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 454 473 - T 12-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AMJ96_CH01386 629d0c1836369e47fe658efad11050df 616 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 221 354 3.9E-36 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMJ96_CH01386 629d0c1836369e47fe658efad11050df 616 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 24 198 2.1E-36 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMJ96_CH01386 629d0c1836369e47fe658efad11050df 616 SUPERFAMILY SSF52518 35 208 1.93E-31 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_CH01386 629d0c1836369e47fe658efad11050df 616 SUPERFAMILY SSF52518 397 601 4.57E-49 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_CH01386 629d0c1836369e47fe658efad11050df 616 TIGRFAM TIGR04377 myo_inos_iolD: 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase 6 614 1.3E-281 T 12-10-2018 IPR030817 3,5/4-Trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22 AMJ96_CH01386 629d0c1836369e47fe658efad11050df 616 Gene3D G3DSA:3.40.50.1220 213 398 2.5E-39 T 12-10-2018 AMJ96_CH01386 629d0c1836369e47fe658efad11050df 616 SUPERFAMILY SSF52467 182 379 2.0E-43 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMJ96_CH01386 629d0c1836369e47fe658efad11050df 616 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 418 569 2.2E-35 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMJ96_CH01386 629d0c1836369e47fe658efad11050df 616 Gene3D G3DSA:3.40.50.970 7 203 1.3E-31 T 12-10-2018 AMJ96_CH01386 629d0c1836369e47fe658efad11050df 616 Gene3D G3DSA:3.40.50.970 399 582 1.2E-39 T 12-10-2018 AMJ96_PB00317 5ce34a18d049e07dce45973bf6069baa 173 Gene3D G3DSA:1.10.260.40 42 109 1.3E-11 T 12-10-2018 AMJ96_PB00317 5ce34a18d049e07dce45973bf6069baa 173 Pfam PF01381 Helix-turn-helix 50 104 2.8E-11 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_PB00317 5ce34a18d049e07dce45973bf6069baa 173 SUPERFAMILY SSF47413 45 107 4.29E-12 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PB00317 5ce34a18d049e07dce45973bf6069baa 173 SMART SM00530 49 104 4.0E-10 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH00094 26e461aa7f18a3c99b7ed15618305014 493 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 264 271 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMJ96_CH00094 26e461aa7f18a3c99b7ed15618305014 493 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 39 486 1.7E-217 T 12-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 AMJ96_CH00094 26e461aa7f18a3c99b7ed15618305014 493 Pfam PF00171 Aldehyde dehydrogenase family 28 487 1.7E-173 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_CH00094 26e461aa7f18a3c99b7ed15618305014 493 SUPERFAMILY SSF53720 13 491 8.12E-174 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_CH00094 26e461aa7f18a3c99b7ed15618305014 493 Gene3D G3DSA:3.40.309.10 271 460 2.4E-185 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_CH00094 26e461aa7f18a3c99b7ed15618305014 493 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 292 303 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMJ96_CH00094 26e461aa7f18a3c99b7ed15618305014 493 Gene3D G3DSA:3.40.605.10 33 483 2.4E-185 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_CH01098 ff6d0a6dc06768c2b3c56280e1173dc0 201 SUPERFAMILY SSF52833 1 76 1.35E-16 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH01098 ff6d0a6dc06768c2b3c56280e1173dc0 201 SUPERFAMILY SSF47616 78 198 4.32E-21 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMJ96_CH01098 ff6d0a6dc06768c2b3c56280e1173dc0 201 Pfam PF02798 Glutathione S-transferase, N-terminal domain 13 68 1.5E-10 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMJ96_CH01098 ff6d0a6dc06768c2b3c56280e1173dc0 201 Gene3D G3DSA:3.40.30.10 1 83 6.5E-19 T 12-10-2018 AMJ96_CH01098 ff6d0a6dc06768c2b3c56280e1173dc0 201 Gene3D G3DSA:1.20.1050.10 84 191 1.1E-19 T 12-10-2018 AMJ96_CH01098 ff6d0a6dc06768c2b3c56280e1173dc0 201 Pfam PF13410 Glutathione S-transferase, C-terminal domain 124 188 3.2E-6 T 12-10-2018 AMJ96_CH03190 f98f1a80b68589370fa42cfe44e3afbe 367 Pfam PF01926 50S ribosome-binding GTPase 5 120 2.8E-24 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 AMJ96_CH03190 f98f1a80b68589370fa42cfe44e3afbe 367 PIRSF PIRSF006641 1 367 1.6E-155 T 12-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AMJ96_CH03190 f98f1a80b68589370fa42cfe44e3afbe 367 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 367 43.046 T 12-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AMJ96_CH03190 f98f1a80b68589370fa42cfe44e3afbe 367 SUPERFAMILY SSF52540 3 305 1.73E-82 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03190 f98f1a80b68589370fa42cfe44e3afbe 367 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 366 9.7E-152 T 12-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AMJ96_CH03190 f98f1a80b68589370fa42cfe44e3afbe 367 Gene3D G3DSA:3.40.50.300 4 282 4.0E-151 T 12-10-2018 AMJ96_CH03190 f98f1a80b68589370fa42cfe44e3afbe 367 Pfam PF06071 Protein of unknown function (DUF933) 283 366 1.9E-40 T 12-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 AMJ96_CH03190 f98f1a80b68589370fa42cfe44e3afbe 367 Gene3D G3DSA:3.10.20.30 49 365 4.0E-151 T 12-10-2018 IPR012675 Beta-grasp domain superfamily AMJ96_CH03190 f98f1a80b68589370fa42cfe44e3afbe 367 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.5E-35 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 AMJ96_CH03190 f98f1a80b68589370fa42cfe44e3afbe 367 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 71 86 2.5E-35 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 AMJ96_CH03190 f98f1a80b68589370fa42cfe44e3afbe 367 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 27 45 2.5E-35 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 AMJ96_CH03190 f98f1a80b68589370fa42cfe44e3afbe 367 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 88 106 2.5E-35 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 AMJ96_CH03190 f98f1a80b68589370fa42cfe44e3afbe 367 SUPERFAMILY SSF81271 283 364 6.32E-36 T 12-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AMJ96_CH03190 f98f1a80b68589370fa42cfe44e3afbe 367 Gene3D G3DSA:1.10.150.300 114 203 4.0E-151 T 12-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 AMJ96_CH03866 13c38f943f56126c0f68680b4aa0129e 486 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 12 428 1.4E-95 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMJ96_CH03866 13c38f943f56126c0f68680b4aa0129e 486 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 3 424 1.8E-107 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMJ96_CH00481 41e3cca94f0e7a0db516a27b7fb001da 425 Gene3D G3DSA:1.20.1260.10 254 416 5.5E-47 T 12-10-2018 IPR012347 Ferritin-like AMJ96_CH00481 41e3cca94f0e7a0db516a27b7fb001da 425 Gene3D G3DSA:1.20.1260.10 1 186 3.0E-69 T 12-10-2018 IPR012347 Ferritin-like AMJ96_CH00481 41e3cca94f0e7a0db516a27b7fb001da 425 SUPERFAMILY SSF47240 258 409 2.84E-42 T 12-10-2018 IPR009078 Ferritin-like superfamily AMJ96_CH00481 41e3cca94f0e7a0db516a27b7fb001da 425 Pfam PF05974 Domain of unknown function (DUF892) 259 414 1.8E-49 T 12-10-2018 IPR010287 Domain of unknown function DUF892 AMJ96_CH00481 41e3cca94f0e7a0db516a27b7fb001da 425 SUPERFAMILY SSF47240 1 237 1.84E-81 T 12-10-2018 IPR009078 Ferritin-like superfamily AMJ96_CH00481 41e3cca94f0e7a0db516a27b7fb001da 425 Pfam PF05067 Manganese containing catalase 1 254 1.2E-63 T 12-10-2018 IPR007760 Manganese catalase AMJ96_CH03572 6e003ee04734ca4af5db3723e037eeb4 407 Gene3D G3DSA:2.40.30.170 271 389 2.5E-37 T 12-10-2018 AMJ96_CH03572 6e003ee04734ca4af5db3723e037eeb4 407 Pfam PF13533 Biotin-lipoyl like 97 143 8.9E-11 T 12-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMJ96_CH03572 6e003ee04734ca4af5db3723e037eeb4 407 SUPERFAMILY SSF111369 95 173 1.57E-8 T 12-10-2018 AMJ96_CH03572 6e003ee04734ca4af5db3723e037eeb4 407 Pfam PF13437 HlyD family secretion protein 255 375 2.9E-16 T 12-10-2018 AMJ96_CH03572 6e003ee04734ca4af5db3723e037eeb4 407 Gene3D G3DSA:1.10.287.470 149 254 3.3E-10 T 12-10-2018 AMJ96_CH03572 6e003ee04734ca4af5db3723e037eeb4 407 SUPERFAMILY SSF56954 133 251 2.22E-5 T 12-10-2018 AMJ96_CH03572 6e003ee04734ca4af5db3723e037eeb4 407 Gene3D G3DSA:2.40.50.100 96 129 1.1E-6 T 12-10-2018 AMJ96_CH03572 6e003ee04734ca4af5db3723e037eeb4 407 Gene3D G3DSA:1.10.287.470 130 148 1.1E-6 T 12-10-2018 AMJ96_PD00551 03dbdd0ae736e4d1958cf8de812bffc9 249 Gene3D G3DSA:3.40.50.720 1 248 4.7E-64 T 12-10-2018 AMJ96_PD00551 03dbdd0ae736e4d1958cf8de812bffc9 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 67 78 6.2E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00551 03dbdd0ae736e4d1958cf8de812bffc9 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 159 6.2E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00551 03dbdd0ae736e4d1958cf8de812bffc9 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 6.2E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00551 03dbdd0ae736e4d1958cf8de812bffc9 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 114 130 6.2E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00551 03dbdd0ae736e4d1958cf8de812bffc9 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 178 6.2E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00551 03dbdd0ae736e4d1958cf8de812bffc9 249 SUPERFAMILY SSF51735 1 241 4.24E-62 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00551 03dbdd0ae736e4d1958cf8de812bffc9 249 Pfam PF00106 short chain dehydrogenase 2 173 7.6E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00551 03dbdd0ae736e4d1958cf8de812bffc9 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 127 155 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_PD00551 03dbdd0ae736e4d1958cf8de812bffc9 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 120 128 8.1E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00551 03dbdd0ae736e4d1958cf8de812bffc9 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 159 8.1E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00551 03dbdd0ae736e4d1958cf8de812bffc9 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 67 78 8.1E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02214 884d00d64a619234bee27f7549184820 260 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 12-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AMJ96_CH02214 884d00d64a619234bee27f7549184820 260 PIRSF PIRSF005902 1 258 4.2E-77 T 12-10-2018 IPR001130 TatD family GO:0016788 AMJ96_CH02214 884d00d64a619234bee27f7549184820 260 Pfam PF01026 TatD related DNase 3 255 1.9E-79 T 12-10-2018 IPR001130 TatD family GO:0016788 AMJ96_CH02214 884d00d64a619234bee27f7549184820 260 Gene3D G3DSA:3.20.20.140 1 258 2.1E-89 T 12-10-2018 AMJ96_CH02214 884d00d64a619234bee27f7549184820 260 SUPERFAMILY SSF51556 2 255 1.17E-84 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_CH02214 884d00d64a619234bee27f7549184820 260 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 255 3.0E-84 T 12-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 AMJ96_CH02409 fcd6519000eb4e27df51362e08149e46 203 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 39 196 3.9E-27 T 12-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component AMJ96_CH02409 fcd6519000eb4e27df51362e08149e46 203 Gene3D G3DSA:3.40.50.10610 29 203 1.3E-46 T 12-10-2018 AMJ96_CH02409 fcd6519000eb4e27df51362e08149e46 203 SUPERFAMILY SSF159594 37 201 3.4E-40 T 12-10-2018 AMJ96_CH02467 13c259e560a0878013e87398e9b3624f 302 Pfam PF00892 EamA-like transporter family 9 140 1.6E-10 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH02467 13c259e560a0878013e87398e9b3624f 302 Pfam PF00892 EamA-like transporter family 150 280 2.4E-6 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH02467 13c259e560a0878013e87398e9b3624f 302 SUPERFAMILY SSF103481 45 144 8.5E-13 T 12-10-2018 AMJ96_CH02467 13c259e560a0878013e87398e9b3624f 302 SUPERFAMILY SSF103481 193 285 1.44E-11 T 12-10-2018 AMJ96_CH02302 71dbad95759dc9d7efac52b8cd895686 378 SUPERFAMILY SSF101790 282 378 1.8E-25 T 12-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal AMJ96_CH02302 71dbad95759dc9d7efac52b8cd895686 378 PIRSF PIRSF006487 2 378 2.7E-75 T 12-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 AMJ96_CH02302 71dbad95759dc9d7efac52b8cd895686 378 Gene3D G3DSA:2.40.30.110 289 368 2.3E-26 T 12-10-2018 AMJ96_CH02302 71dbad95759dc9d7efac52b8cd895686 378 Pfam PF01571 Aminomethyltransferase folate-binding domain 12 261 6.6E-82 T 12-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain AMJ96_CH02302 71dbad95759dc9d7efac52b8cd895686 378 SUPERFAMILY SSF103025 7 266 2.51E-79 T 12-10-2018 AMJ96_CH02302 71dbad95759dc9d7efac52b8cd895686 378 Gene3D G3DSA:4.10.1250.10 239 287 7.1E-20 T 12-10-2018 AMJ96_CH02302 71dbad95759dc9d7efac52b8cd895686 378 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 7 372 1.3E-94 T 12-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 AMJ96_CH02302 71dbad95759dc9d7efac52b8cd895686 378 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 274 368 2.8E-22 T 12-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMJ96_CH02302 71dbad95759dc9d7efac52b8cd895686 378 Gene3D G3DSA:3.30.70.1400 58 146 3.4E-81 T 12-10-2018 AMJ96_CH02302 71dbad95759dc9d7efac52b8cd895686 378 Gene3D G3DSA:3.30.1360.120 8 238 3.4E-81 T 12-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMJ96_CH00831 d3095c6fd538bce183b9773ab1436ab5 399 Pfam PF01565 FAD binding domain 5 144 1.1E-17 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMJ96_CH00831 d3095c6fd538bce183b9773ab1436ab5 399 Gene3D G3DSA:1.10.45.10 363 398 3.8E-5 T 12-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AMJ96_CH00831 d3095c6fd538bce183b9773ab1436ab5 399 Gene3D G3DSA:3.30.465.10 56 180 9.1E-32 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMJ96_CH00831 d3095c6fd538bce183b9773ab1436ab5 399 SUPERFAMILY SSF55103 197 399 2.13E-23 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMJ96_CH00831 d3095c6fd538bce183b9773ab1436ab5 399 SUPERFAMILY SSF56176 4 182 1.03E-32 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMJ96_CH00831 d3095c6fd538bce183b9773ab1436ab5 399 Pfam PF02913 FAD linked oxidases, C-terminal domain 373 397 7.0E-4 T 12-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AMJ96_PB00191 c0fc15d5a1a45443139f11d35f446b50 788 SMART SM00382 431 699 8.4E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PB00191 c0fc15d5a1a45443139f11d35f446b50 788 TIGRFAM TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family 13 784 3.9E-256 T 12-10-2018 IPR004346 CagE, TrbE, VirB component of type IV transporter system GO:0005524 AMJ96_PB00191 c0fc15d5a1a45443139f11d35f446b50 788 SUPERFAMILY SSF52540 386 714 5.72E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PB00191 c0fc15d5a1a45443139f11d35f446b50 788 Gene3D G3DSA:3.40.50.300 577 754 1.5E-23 T 12-10-2018 AMJ96_PB00191 c0fc15d5a1a45443139f11d35f446b50 788 Gene3D G3DSA:3.40.50.300 409 522 3.6E-7 T 12-10-2018 AMJ96_PB00191 c0fc15d5a1a45443139f11d35f446b50 788 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 183 380 2.3E-48 T 12-10-2018 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 AMJ96_CH03165 6c52ef9fe591c47d3d983f8caeb8ce18 458 Gene3D G3DSA:1.10.287.130 206 314 1.3E-14 T 12-10-2018 AMJ96_CH03165 6c52ef9fe591c47d3d983f8caeb8ce18 458 SMART SM00304 202 254 0.0039 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH03165 6c52ef9fe591c47d3d983f8caeb8ce18 458 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 355 457 4.2E-16 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH03165 6c52ef9fe591c47d3d983f8caeb8ce18 458 SUPERFAMILY SSF55874 331 457 1.17E-28 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH03165 6c52ef9fe591c47d3d983f8caeb8ce18 458 SMART SM00388 255 313 1.4E-4 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH03165 6c52ef9fe591c47d3d983f8caeb8ce18 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 399 5.6E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03165 6c52ef9fe591c47d3d983f8caeb8ce18 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 413 5.6E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03165 6c52ef9fe591c47d3d983f8caeb8ce18 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 420 438 5.6E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03165 6c52ef9fe591c47d3d983f8caeb8ce18 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 457 5.6E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03165 6c52ef9fe591c47d3d983f8caeb8ce18 458 SMART SM00387 351 458 9.9E-22 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH03165 6c52ef9fe591c47d3d983f8caeb8ce18 458 Gene3D G3DSA:3.30.565.10 318 458 1.0E-28 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH03165 6c52ef9fe591c47d3d983f8caeb8ce18 458 SUPERFAMILY SSF47384 241 311 1.29E-8 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH00582 052570e0e0d5edf14359f5ce2478df86 400 SUPERFAMILY SSF103473 13 396 2.22E-28 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH00582 052570e0e0d5edf14359f5ce2478df86 400 Gene3D G3DSA:1.20.1250.20 10 388 2.5E-25 T 12-10-2018 AMJ96_CH00582 052570e0e0d5edf14359f5ce2478df86 400 Pfam PF07690 Major Facilitator Superfamily 22 269 1.1E-12 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH01719 a1c14ed9499bda2f8317e513b8fb8e49 92 Pfam PF00203 Ribosomal protein S19 3 83 7.2E-35 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01719 a1c14ed9499bda2f8317e513b8fb8e49 92 SUPERFAMILY SSF54570 3 84 9.68E-34 T 12-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01719 a1c14ed9499bda2f8317e513b8fb8e49 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 4.3E-41 T 12-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMJ96_CH01719 a1c14ed9499bda2f8317e513b8fb8e49 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 12-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01719 a1c14ed9499bda2f8317e513b8fb8e49 92 PIRSF PIRSF002144 1 92 6.2E-32 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01719 a1c14ed9499bda2f8317e513b8fb8e49 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.181 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01719 a1c14ed9499bda2f8317e513b8fb8e49 92 Gene3D G3DSA:3.30.860.10 1 92 3.1E-38 T 12-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01719 a1c14ed9499bda2f8317e513b8fb8e49 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.8E-20 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01719 a1c14ed9499bda2f8317e513b8fb8e49 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.8E-20 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01719 a1c14ed9499bda2f8317e513b8fb8e49 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.8E-20 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH00093 a2e66cf9c77f6b61bc65fd4e9e3abbff 69 Hamap MF_00715 Protein SlyX [slyX]. 3 69 14.302 T 12-10-2018 IPR007236 SlyX AMJ96_CH00093 a2e66cf9c77f6b61bc65fd4e9e3abbff 69 Pfam PF04102 SlyX 6 69 3.2E-19 T 12-10-2018 IPR007236 SlyX AMJ96_PD00406 08a73b44c1c178de82bb63f998c7b73e 337 Gene3D G3DSA:3.40.190.10 114 224 1.3E-100 T 12-10-2018 AMJ96_PD00406 08a73b44c1c178de82bb63f998c7b73e 337 Pfam PF09084 NMT1/THI5 like 50 260 1.2E-21 T 12-10-2018 IPR015168 SsuA/THI5-like AMJ96_PD00406 08a73b44c1c178de82bb63f998c7b73e 337 Gene3D G3DSA:3.40.190.10 35 332 1.3E-100 T 12-10-2018 AMJ96_PD00406 08a73b44c1c178de82bb63f998c7b73e 337 SUPERFAMILY SSF53850 31 278 1.09E-33 T 12-10-2018 AMJ96_PD00592 97d4468cbdf2f993df970f6228d2a705 526 PIRSF PIRSF000203 3 525 2.4E-219 T 12-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AMJ96_PD00592 97d4468cbdf2f993df970f6228d2a705 526 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 145 375 2.0E-70 T 12-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMJ96_PD00592 97d4468cbdf2f993df970f6228d2a705 526 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 443 525 3.3E-32 T 12-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AMJ96_PD00592 97d4468cbdf2f993df970f6228d2a705 526 SMART SM01002 150 318 2.8E-74 T 12-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMJ96_PD00592 97d4468cbdf2f993df970f6228d2a705 526 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 6 141 9.6E-45 T 12-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMJ96_PD00592 97d4468cbdf2f993df970f6228d2a705 526 Gene3D G3DSA:3.40.50.720 5 372 4.2E-142 T 12-10-2018 AMJ96_PD00592 97d4468cbdf2f993df970f6228d2a705 526 SMART SM01003 6 141 1.8E-63 T 12-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMJ96_PD00592 97d4468cbdf2f993df970f6228d2a705 526 Gene3D G3DSA:3.40.50.720 141 325 4.2E-142 T 12-10-2018 AMJ96_PD00592 97d4468cbdf2f993df970f6228d2a705 526 TIGRFAM TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit 4 525 3.8E-202 T 12-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AMJ96_PD00592 97d4468cbdf2f993df970f6228d2a705 526 SUPERFAMILY SSF52283 4 172 4.59E-51 T 12-10-2018 AMJ96_PD00592 97d4468cbdf2f993df970f6228d2a705 526 SUPERFAMILY SSF51735 141 323 3.38E-37 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03671 a93fe11f37f4212a7445084f2b959622 244 Pfam PF09490 Probable cobalt transporter subunit (CbtA) 4 229 5.0E-67 T 12-10-2018 IPR012666 Cobalt transporter subunit CbtA, putative AMJ96_CH00323 c06c145a5cbf3c4c95b29f51eb3e187a 265 Pfam PF02673 Bacitracin resistance protein BacA 6 254 1.7E-73 T 12-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMJ96_CH00323 c06c145a5cbf3c4c95b29f51eb3e187a 265 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 1 259 16.647 T 12-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AMJ96_PD00229 8bf9c76528c5d3ac664ced898a5f239d 299 Pfam PF01261 Xylose isomerase-like TIM barrel 27 218 2.5E-26 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMJ96_PD00229 8bf9c76528c5d3ac664ced898a5f239d 299 SUPERFAMILY SSF51658 20 291 2.49E-36 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_PD00229 8bf9c76528c5d3ac664ced898a5f239d 299 Gene3D G3DSA:3.20.20.150 18 291 3.9E-39 T 12-10-2018 AMJ96_CH00402 1ef199b420dbf18e05a4712ba2e935a5 135 Gene3D G3DSA:3.10.180.10 1 129 1.6E-33 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH00402 1ef199b420dbf18e05a4712ba2e935a5 135 SUPERFAMILY SSF54593 4 130 3.36E-25 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH00402 1ef199b420dbf18e05a4712ba2e935a5 135 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 125 3.7E-13 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH01721 57a2ab83269d43b498bd098b16125345 244 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 5.3E-40 T 12-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01721 57a2ab83269d43b498bd098b16125345 244 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 9.7E-97 T 12-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 AMJ96_CH01721 57a2ab83269d43b498bd098b16125345 244 SUPERFAMILY SSF54814 2 106 2.43E-39 T 12-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AMJ96_CH01721 57a2ab83269d43b498bd098b16125345 244 SMART SM00322 60 125 1.2E-8 T 12-10-2018 IPR004087 K Homology domain GO:0003676 AMJ96_CH01721 57a2ab83269d43b498bd098b16125345 244 Pfam PF07650 KH domain 38 110 9.8E-20 T 12-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01721 57a2ab83269d43b498bd098b16125345 244 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 12-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01721 57a2ab83269d43b498bd098b16125345 244 Gene3D G3DSA:3.30.1140.32 108 208 2.1E-44 T 12-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01721 57a2ab83269d43b498bd098b16125345 244 SUPERFAMILY SSF54821 108 206 4.32E-40 T 12-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01721 57a2ab83269d43b498bd098b16125345 244 Gene3D G3DSA:3.30.300.20 17 107 1.8E-31 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta AMJ96_CH01721 57a2ab83269d43b498bd098b16125345 244 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.896 T 12-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 AMJ96_CH02691 d80a807bb3ce0b9b7de23cd07592a562 119 Gene3D G3DSA:1.10.10.10 1 56 1.1E-6 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02691 d80a807bb3ce0b9b7de23cd07592a562 119 SUPERFAMILY SSF46689 1 109 4.12E-25 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02691 d80a807bb3ce0b9b7de23cd07592a562 119 Pfam PF13565 Homeodomain-like domain 39 105 3.6E-9 T 12-10-2018 AMJ96_CH02581 d80a807bb3ce0b9b7de23cd07592a562 119 Gene3D G3DSA:1.10.10.10 1 56 1.1E-6 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02581 d80a807bb3ce0b9b7de23cd07592a562 119 SUPERFAMILY SSF46689 1 109 4.12E-25 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02581 d80a807bb3ce0b9b7de23cd07592a562 119 Pfam PF13565 Homeodomain-like domain 39 105 3.6E-9 T 12-10-2018 AMJ96_PD00514 1b98cf142b2928d39e866d06b5fba765 320 Pfam PF02615 Malate/L-lactate dehydrogenase 3 266 5.4E-65 T 12-10-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0016491|GO:0055114 AMJ96_PD00514 1b98cf142b2928d39e866d06b5fba765 320 Gene3D G3DSA:1.10.1530.10 3 290 7.6E-66 T 12-10-2018 AMJ96_PD00514 1b98cf142b2928d39e866d06b5fba765 320 Gene3D G3DSA:3.30.1370.60 50 286 7.6E-66 T 12-10-2018 AMJ96_PD00514 1b98cf142b2928d39e866d06b5fba765 320 SUPERFAMILY SSF89733 2 317 1.19E-68 T 12-10-2018 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily GO:0016491|GO:0055114 AMJ96_PD00514 1b98cf142b2928d39e866d06b5fba765 320 Gene3D G3DSA:3.30.60.50 167 214 7.6E-66 T 12-10-2018 AMJ96_CH02825 74c66e276b9f78783f8ff2c3ad607075 88 Pfam PF10041 Uncharacterized conserved protein (DUF2277) 1 78 1.8E-38 T 12-10-2018 IPR018735 Protein of unknown function DUF2277 AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 Gene3D G3DSA:3.50.50.60 291 406 1.4E-90 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 Gene3D G3DSA:2.40.30.110 889 975 2.2E-7 T 12-10-2018 AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 Gene3D G3DSA:3.30.1360.120 591 852 2.9E-78 T 12-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 Pfam PF01571 Aminomethyltransferase folate-binding domain 596 861 3.7E-62 T 12-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 SUPERFAMILY SSF101790 882 980 7.52E-16 T 12-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 PIRSF PIRSF037980 1 983 0.0 T 12-10-2018 IPR006277 Sarcosine oxidase, alpha subunit GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 Gene3D G3DSA:1.10.10.1100 490 564 1.4E-90 T 12-10-2018 AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 SUPERFAMILY SSF51905 159 467 5.5E-31 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 Gene3D G3DSA:3.10.20.440 11 103 5.0E-8 T 12-10-2018 AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 Gene3D G3DSA:3.30.70.1400 650 876 2.9E-78 T 12-10-2018 AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 TIGRFAM TIGR01372 soxA: sarcosine oxidase, alpha subunit family 4 982 0.0 T 12-10-2018 IPR006277 Sarcosine oxidase, alpha subunit GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 Gene3D G3DSA:3.50.50.60 170 569 1.4E-90 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 170 307 5.6E-9 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 204 219 1.6E-12 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 450 469 1.6E-12 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 170 192 1.6E-12 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 280 288 1.6E-12 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 SUPERFAMILY SSF103025 590 879 1.21E-84 T 12-10-2018 AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 17 100 1.1E-25 T 12-10-2018 AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 171 190 1.9E-8 T 12-10-2018 AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 279 297 1.9E-8 T 12-10-2018 AMJ96_PC00433 3fcbf59da96b2d3f1bb321f0a2790a18 983 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 870 956 2.3E-14 T 12-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMJ96_CH01220 697a3000e23a16a496d97641a84d3500 259 Gene3D G3DSA:3.10.180.10 138 259 1.6E-28 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01220 697a3000e23a16a496d97641a84d3500 259 Gene3D G3DSA:3.10.180.10 3 129 2.1E-39 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01220 697a3000e23a16a496d97641a84d3500 259 SUPERFAMILY SSF54593 141 258 1.88E-21 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01220 697a3000e23a16a496d97641a84d3500 259 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 121 7.0E-6 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH01220 697a3000e23a16a496d97641a84d3500 259 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 147 252 1.2E-4 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH01220 697a3000e23a16a496d97641a84d3500 259 SUPERFAMILY SSF54593 7 125 2.2E-22 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH02027 01dd3e09b711631b8a9e669f6828af01 417 SUPERFAMILY SSF161098 90 156 1.83E-10 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02027 01dd3e09b711631b8a9e669f6828af01 417 Gene3D G3DSA:1.10.3720.10 76 186 5.7E-11 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02027 01dd3e09b711631b8a9e669f6828af01 417 Gene3D G3DSA:1.10.3720.10 196 414 1.3E-29 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02027 01dd3e09b711631b8a9e669f6828af01 417 SUPERFAMILY SSF161098 204 396 2.83E-22 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02027 01dd3e09b711631b8a9e669f6828af01 417 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 248 412 1.6E-11 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02027 01dd3e09b711631b8a9e669f6828af01 417 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 89 147 4.3E-12 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_CH00763 fb851a7254af7b18b14296ba34ecfa1e 650 ProSitePatterns PS00455 Putative AMP-binding domain signature. 268 279 - T 12-10-2018 IPR020845 AMP-binding, conserved site AMJ96_CH00763 fb851a7254af7b18b14296ba34ecfa1e 650 Pfam PF00501 AMP-binding enzyme 101 524 5.5E-48 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMJ96_CH00763 fb851a7254af7b18b14296ba34ecfa1e 650 SUPERFAMILY SSF56801 39 625 1.07E-123 T 12-10-2018 AMJ96_CH00763 fb851a7254af7b18b14296ba34ecfa1e 650 Pfam PF13193 AMP-binding enzyme C-terminal domain 538 612 1.4E-6 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMJ96_CH00763 fb851a7254af7b18b14296ba34ecfa1e 650 TIGRFAM TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase 4 650 0.0 T 12-10-2018 IPR005914 Acetoacetyl-CoA synthase GO:0006629|GO:0030729 KEGG: 00280+6.2.1.16|KEGG: 00650+6.2.1.16|Reactome: R-HSA-77111 AMJ96_CH00763 fb851a7254af7b18b14296ba34ecfa1e 650 Gene3D G3DSA:3.40.50.12780 80 520 1.1E-60 T 12-10-2018 AMJ96_CH00763 fb851a7254af7b18b14296ba34ecfa1e 650 Gene3D G3DSA:3.30.300.30 524 644 3.8E-15 T 12-10-2018 AMJ96_PC00094 a3060960d66c08fc9d5b5aeb1afa7037 258 SUPERFAMILY SSF52540 7 249 7.26E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00094 a3060960d66c08fc9d5b5aeb1afa7037 258 SMART SM00382 31 228 1.3E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00094 a3060960d66c08fc9d5b5aeb1afa7037 258 PIRSF PIRSF039085 4 255 1.9E-114 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMJ96_PC00094 a3060960d66c08fc9d5b5aeb1afa7037 258 Gene3D G3DSA:3.40.50.300 4 253 6.8E-73 T 12-10-2018 AMJ96_PC00094 a3060960d66c08fc9d5b5aeb1afa7037 258 Pfam PF00005 ABC transporter 22 180 1.3E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00094 a3060960d66c08fc9d5b5aeb1afa7037 258 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00575 55249b5f770d54eb3809a3d18671c0f1 203 Pfam PF07336 Putative stress-induced transcription regulator 13 150 5.2E-13 T 12-10-2018 IPR010852 Putative stress-induced transcription regulator AMJ96_PD00575 55249b5f770d54eb3809a3d18671c0f1 203 Pfam PF11706 CGNR zinc finger 157 198 1.4E-14 T 12-10-2018 IPR021005 Zinc finger, CGNR AMJ96_PD00575 55249b5f770d54eb3809a3d18671c0f1 203 Gene3D G3DSA:1.10.3300.10 12 200 1.2E-21 T 12-10-2018 IPR023286 ABATE domain superfamily AMJ96_PD00575 55249b5f770d54eb3809a3d18671c0f1 203 SUPERFAMILY SSF160904 8 198 4.71E-34 T 12-10-2018 AMJ96_CH03039 dae97b5799e250fdc3b02bfb69241252 301 SUPERFAMILY SSF103481 42 145 5.62E-14 T 12-10-2018 AMJ96_CH03039 dae97b5799e250fdc3b02bfb69241252 301 SUPERFAMILY SSF103481 202 289 6.93E-13 T 12-10-2018 AMJ96_CH03039 dae97b5799e250fdc3b02bfb69241252 301 Pfam PF00892 EamA-like transporter family 155 288 7.9E-19 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH03039 dae97b5799e250fdc3b02bfb69241252 301 Pfam PF00892 EamA-like transporter family 8 142 1.1E-20 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH03730 7e360379da26157db8b035dacd9437e4 107 Gene3D G3DSA:1.10.10.10 3 107 4.0E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03730 7e360379da26157db8b035dacd9437e4 107 Pfam PF12840 Helix-turn-helix domain 10 68 8.3E-14 T 12-10-2018 AMJ96_CH03730 7e360379da26157db8b035dacd9437e4 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 59 74 3.5E-6 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH03730 7e360379da26157db8b035dacd9437e4 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 11 26 3.5E-6 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH03730 7e360379da26157db8b035dacd9437e4 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 44 59 3.5E-6 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH03730 7e360379da26157db8b035dacd9437e4 107 SUPERFAMILY SSF46785 7 101 8.35E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03730 7e360379da26157db8b035dacd9437e4 107 SMART SM00418 9 88 9.2E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH03929 db430387d8ae4da3f7bee9029abf2b78 271 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 76 210 3.3E-23 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMJ96_CH03929 db430387d8ae4da3f7bee9029abf2b78 271 Hamap MF_00942 Endonuclease III [nth]. 30 251 37.96 T 12-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 AMJ96_CH03929 db430387d8ae4da3f7bee9029abf2b78 271 ProSitePatterns PS01155 Endonuclease III family signature. 144 173 - T 12-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 AMJ96_CH03929 db430387d8ae4da3f7bee9029abf2b78 271 Pfam PF00633 Helix-hairpin-helix motif 142 169 7.4E-9 T 12-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 AMJ96_CH03929 db430387d8ae4da3f7bee9029abf2b78 271 SMART SM00478 80 227 2.0E-61 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMJ96_CH03929 db430387d8ae4da3f7bee9029abf2b78 271 Gene3D G3DSA:1.10.1670.10 54 245 1.2E-76 T 12-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 AMJ96_CH03929 db430387d8ae4da3f7bee9029abf2b78 271 Gene3D G3DSA:1.10.340.30 63 174 1.2E-76 T 12-10-2018 AMJ96_CH03929 db430387d8ae4da3f7bee9029abf2b78 271 SUPERFAMILY SSF48150 46 250 4.24E-72 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AMJ96_CH03929 db430387d8ae4da3f7bee9029abf2b78 271 TIGRFAM TIGR01083 nth: endonuclease III 47 236 2.2E-83 T 12-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 AMJ96_CH03929 db430387d8ae4da3f7bee9029abf2b78 271 PIRSF PIRSF001435 44 253 5.2E-53 T 12-10-2018 AMJ96_CH03929 db430387d8ae4da3f7bee9029abf2b78 271 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 229 245 6.1E-6 T 12-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 AMJ96_CH01929 71b37e3bb7d6d20656a12a4e820b87db 204 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 14 184 4.4E-68 T 12-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 AMJ96_CH01929 71b37e3bb7d6d20656a12a4e820b87db 204 SUPERFAMILY SSF55729 7 200 4.5E-76 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH01929 71b37e3bb7d6d20656a12a4e820b87db 204 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 17 198 3.6E-55 T 12-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 AMJ96_CH01929 71b37e3bb7d6d20656a12a4e820b87db 204 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 204 82.396 T 12-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 AMJ96_CH01929 71b37e3bb7d6d20656a12a4e820b87db 204 Gene3D G3DSA:3.40.630.70 42 203 1.5E-60 T 12-10-2018 AMJ96_CH02604 07b60d269ffdcad89514685a692dfdc0 232 PRINTS PR00783 Major intrinsic protein family signature 86 105 2.6E-19 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMJ96_CH02604 07b60d269ffdcad89514685a692dfdc0 232 PRINTS PR00783 Major intrinsic protein family signature 8 27 2.6E-19 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMJ96_CH02604 07b60d269ffdcad89514685a692dfdc0 232 PRINTS PR00783 Major intrinsic protein family signature 49 73 2.6E-19 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMJ96_CH02604 07b60d269ffdcad89514685a692dfdc0 232 PRINTS PR00783 Major intrinsic protein family signature 129 147 2.6E-19 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMJ96_CH02604 07b60d269ffdcad89514685a692dfdc0 232 PRINTS PR00783 Major intrinsic protein family signature 196 216 2.6E-19 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMJ96_CH02604 07b60d269ffdcad89514685a692dfdc0 232 Gene3D G3DSA:1.20.1080.10 1 231 1.1E-34 T 12-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AMJ96_CH02604 07b60d269ffdcad89514685a692dfdc0 232 SUPERFAMILY SSF81338 4 223 2.35E-44 T 12-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AMJ96_CH02604 07b60d269ffdcad89514685a692dfdc0 232 Pfam PF00230 Major intrinsic protein 3 144 2.2E-18 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMJ96_CH01018 3fe0dc44acb64cc813e503a17659db7a 100 Gene3D G3DSA:3.30.2310.20 2 96 1.7E-19 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily AMJ96_CH01018 3fe0dc44acb64cc813e503a17659db7a 100 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 5 91 3.2E-11 T 12-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family AMJ96_CH04338 9133ee68b06dfb5948fa8ab84d871bdb 1150 Pfam PF01336 OB-fold nucleic acid binding domain 1004 1078 1.1E-7 T 12-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AMJ96_CH04338 9133ee68b06dfb5948fa8ab84d871bdb 1150 Pfam PF02811 PHP domain 12 125 1.1E-6 T 12-10-2018 IPR004013 PHP domain GO:0003824 AMJ96_CH04338 9133ee68b06dfb5948fa8ab84d871bdb 1150 Gene3D G3DSA:3.20.20.140 1 282 2.0E-51 T 12-10-2018 AMJ96_CH04338 9133ee68b06dfb5948fa8ab84d871bdb 1150 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 305 737 5.3E-133 T 12-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH04338 9133ee68b06dfb5948fa8ab84d871bdb 1150 SMART SM00481 8 97 2.6E-7 T 12-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal AMJ96_CH04338 9133ee68b06dfb5948fa8ab84d871bdb 1150 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 7 1150 13.356 T 12-10-2018 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH04338 9133ee68b06dfb5948fa8ab84d871bdb 1150 Pfam PF14579 Helix-hairpin-helix motif 811 917 7.3E-23 T 12-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH04338 9133ee68b06dfb5948fa8ab84d871bdb 1150 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 11 1039 9.2E-141 T 12-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_PD00196 a21a8119d16aede0b60b63739090b6e4 206 Gene3D G3DSA:3.20.20.70 4 199 1.4E-59 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_PD00196 a21a8119d16aede0b60b63739090b6e4 206 SUPERFAMILY SSF51391 4 197 2.49E-63 T 12-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMJ96_PD00196 a21a8119d16aede0b60b63739090b6e4 206 Pfam PF02581 Thiamine monophosphate synthase 12 180 2.3E-52 T 12-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMJ96_PD00196 a21a8119d16aede0b60b63739090b6e4 206 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 12 192 1.9E-46 T 12-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMJ96_CH03586 5ac798488015d5211aff5a1bd54fd61c 294 Gene3D G3DSA:1.10.3720.10 51 292 3.1E-58 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03586 5ac798488015d5211aff5a1bd54fd61c 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 292 1.9E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03586 5ac798488015d5211aff5a1bd54fd61c 294 SUPERFAMILY SSF161098 55 282 1.83E-51 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00837 98ca2f2235e1a4578cbcc1a7142d67f5 209 SUPERFAMILY SSF48150 15 199 1.26E-74 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AMJ96_CH00837 98ca2f2235e1a4578cbcc1a7142d67f5 209 Gene3D G3DSA:1.10.340.30 14 201 2.0E-76 T 12-10-2018 AMJ96_CH00837 98ca2f2235e1a4578cbcc1a7142d67f5 209 Pfam PF03352 Methyladenine glycosylase 18 195 7.1E-73 T 12-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 AMJ96_CH01429 61cd0946793825d8e7f199eee703d507 744 SMART SM00471 41 153 8.4E-7 T 12-10-2018 IPR003607 HD/PDEase domain AMJ96_CH01429 61cd0946793825d8e7f199eee703d507 744 Gene3D G3DSA:3.30.460.10 193 326 4.6E-42 T 12-10-2018 AMJ96_CH01429 61cd0946793825d8e7f199eee703d507 744 Pfam PF13291 ACT domain 664 741 7.1E-16 T 12-10-2018 IPR002912 ACT domain AMJ96_CH01429 61cd0946793825d8e7f199eee703d507 744 SMART SM00954 236 346 1.8E-57 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 AMJ96_CH01429 61cd0946793825d8e7f199eee703d507 744 SUPERFAMILY SSF81271 380 452 8.94E-20 T 12-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AMJ96_CH01429 61cd0946793825d8e7f199eee703d507 744 Pfam PF02824 TGS domain 394 451 1.3E-18 T 12-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 AMJ96_CH01429 61cd0946793825d8e7f199eee703d507 744 Gene3D G3DSA:3.30.70.260 664 744 1.4E-10 T 12-10-2018 AMJ96_CH01429 61cd0946793825d8e7f199eee703d507 744 Pfam PF13328 HD domain 26 175 5.0E-48 T 12-10-2018 IPR003607 HD/PDEase domain AMJ96_CH01429 61cd0946793825d8e7f199eee703d507 744 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 739 8.6E-194 T 12-10-2018 IPR004811 RelA/SpoT family GO:0015969 AMJ96_CH01429 61cd0946793825d8e7f199eee703d507 744 SUPERFAMILY SSF55021 669 741 1.21E-9 T 12-10-2018 AMJ96_CH01429 61cd0946793825d8e7f199eee703d507 744 Gene3D G3DSA:1.10.3210.10 1 191 8.0E-75 T 12-10-2018 AMJ96_CH01429 61cd0946793825d8e7f199eee703d507 744 Gene3D G3DSA:3.10.20.30 386 456 1.9E-28 T 12-10-2018 IPR012675 Beta-grasp domain superfamily AMJ96_CH01429 61cd0946793825d8e7f199eee703d507 744 Pfam PF04607 Region found in RelA / SpoT proteins 236 345 1.5E-34 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 AMJ96_CH01429 61cd0946793825d8e7f199eee703d507 744 SUPERFAMILY SSF109604 5 190 7.22E-69 T 12-10-2018 AMJ96_CH01429 61cd0946793825d8e7f199eee703d507 744 SUPERFAMILY SSF81301 181 397 3.11E-56 T 12-10-2018 AMJ96_PA00254 955d5816f1aec2e086e83a022bb1464b 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.2E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PA00254 955d5816f1aec2e086e83a022bb1464b 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.2E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PA00254 955d5816f1aec2e086e83a022bb1464b 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.2E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PA00254 955d5816f1aec2e086e83a022bb1464b 301 Pfam PF03466 LysR substrate binding domain 88 295 1.2E-27 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PA00254 955d5816f1aec2e086e83a022bb1464b 301 Gene3D G3DSA:3.40.190.290 91 300 1.4E-29 T 12-10-2018 AMJ96_PA00254 955d5816f1aec2e086e83a022bb1464b 301 SUPERFAMILY SSF53850 89 299 3.44E-27 T 12-10-2018 AMJ96_PA00254 955d5816f1aec2e086e83a022bb1464b 301 Gene3D G3DSA:1.10.10.10 1 90 1.9E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PA00254 955d5816f1aec2e086e83a022bb1464b 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 9.0E-22 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PA00254 955d5816f1aec2e086e83a022bb1464b 301 SUPERFAMILY SSF46785 1 86 6.99E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH04318 480e3caed01b881cf473599b28c403a0 89 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 81 1.5E-37 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04318 480e3caed01b881cf473599b28c403a0 89 Gene3D G3DSA:2.40.50.100 20 85 6.2E-31 T 12-10-2018 AMJ96_CH04318 480e3caed01b881cf473599b28c403a0 89 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 12-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH04318 480e3caed01b881cf473599b28c403a0 89 SUPERFAMILY SSF110324 2 83 1.78E-34 T 12-10-2018 AMJ96_CH04318 480e3caed01b881cf473599b28c403a0 89 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 85 4.0E-21 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04318 480e3caed01b881cf473599b28c403a0 89 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 84 28.374 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04318 480e3caed01b881cf473599b28c403a0 89 PRINTS PR00063 Ribosomal protein L27 signature 4 28 6.5E-35 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04318 480e3caed01b881cf473599b28c403a0 89 PRINTS PR00063 Ribosomal protein L27 signature 29 53 6.5E-35 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04318 480e3caed01b881cf473599b28c403a0 89 PRINTS PR00063 Ribosomal protein L27 signature 54 78 6.5E-35 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04318 480e3caed01b881cf473599b28c403a0 89 Pfam PF01016 Ribosomal L27 protein 2 81 4.0E-39 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH02324 8080c275b202ef3c6c2e71086189afc2 275 SUPERFAMILY SSF47240 81 241 1.79E-16 T 12-10-2018 IPR009078 Ferritin-like superfamily AMJ96_CH02324 8080c275b202ef3c6c2e71086189afc2 275 Pfam PF04305 Protein of unknown function (DUF455) 20 266 1.1E-95 T 12-10-2018 IPR007402 Protein of unknown function DUF455 AMJ96_CH02324 8080c275b202ef3c6c2e71086189afc2 275 PIRSF PIRSF012318 4 275 4.7E-112 T 12-10-2018 IPR011197 Uncharacterised conserved protein UCP012318 AMJ96_CH04205 f1e77c97891a9ece5cc012d704ddbfe6 106 SMART SM00830 14 94 7.2E-25 T 12-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMJ96_CH04205 f1e77c97891a9ece5cc012d704ddbfe6 106 Gene3D G3DSA:1.20.59.10 1 105 3.2E-44 T 12-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMJ96_CH04205 f1e77c97891a9ece5cc012d704ddbfe6 106 SUPERFAMILY SSF48600 1 93 4.27E-26 T 12-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMJ96_CH04205 f1e77c97891a9ece5cc012d704ddbfe6 106 Pfam PF01817 Chorismate mutase type II 14 89 3.1E-18 T 12-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AMJ96_CH04205 f1e77c97891a9ece5cc012d704ddbfe6 106 TIGRFAM TIGR01795 CM_mono_cladeE: chorismate mutase 6 99 9.2E-48 T 12-10-2018 IPR010951 Chorismate mutase, bacteria AMJ96_CH03900 cef6817d99c0393ac459dfd6f6ef6a9b 343 ProSitePatterns PS00356 LacI-type HTH domain signature. 9 27 - T 12-10-2018 AMJ96_CH03900 cef6817d99c0393ac459dfd6f6ef6a9b 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 53 2.3E-13 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03900 cef6817d99c0393ac459dfd6f6ef6a9b 343 SMART SM00354 6 76 3.4E-23 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03900 cef6817d99c0393ac459dfd6f6ef6a9b 343 Gene3D G3DSA:1.10.260.40 1 60 1.3E-19 T 12-10-2018 AMJ96_CH03900 cef6817d99c0393ac459dfd6f6ef6a9b 343 Gene3D G3DSA:3.40.50.2300 61 310 1.4E-70 T 12-10-2018 AMJ96_CH03900 cef6817d99c0393ac459dfd6f6ef6a9b 343 Gene3D G3DSA:3.40.50.2300 164 293 1.4E-70 T 12-10-2018 AMJ96_CH03900 cef6817d99c0393ac459dfd6f6ef6a9b 343 SUPERFAMILY SSF53822 66 338 7.07E-70 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH03900 cef6817d99c0393ac459dfd6f6ef6a9b 343 SUPERFAMILY SSF47413 6 65 3.09E-14 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH03900 cef6817d99c0393ac459dfd6f6ef6a9b 343 Pfam PF13377 Periplasmic binding protein-like domain 172 333 3.5E-36 T 12-10-2018 AMJ96_CH01468 a650582f8e0c0fb382ffe2b4cc7d98b3 305 TIGRFAM TIGR00688 rarD: protein RarD 18 270 5.0E-55 T 12-10-2018 IPR004626 RarD protein GO:0005887 AMJ96_CH01468 a650582f8e0c0fb382ffe2b4cc7d98b3 305 Pfam PF00892 EamA-like transporter family 18 152 2.3E-11 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH01468 a650582f8e0c0fb382ffe2b4cc7d98b3 305 SUPERFAMILY SSF103481 59 156 8.5E-10 T 12-10-2018 AMJ96_CH01468 a650582f8e0c0fb382ffe2b4cc7d98b3 305 SUPERFAMILY SSF103481 215 296 1.7E-7 T 12-10-2018 AMJ96_PC00224 5a366e6e44763cc158c0a10875c2acdf 499 SUPERFAMILY SSF53383 48 468 6.95E-71 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_PC00224 5a366e6e44763cc158c0a10875c2acdf 499 Pfam PF00266 Aminotransferase class-V 56 416 1.2E-42 T 12-10-2018 IPR000192 Aminotransferase class V domain AMJ96_PC00224 5a366e6e44763cc158c0a10875c2acdf 499 Gene3D G3DSA:3.40.640.10 70 324 4.9E-54 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_PC00224 5a366e6e44763cc158c0a10875c2acdf 499 Gene3D G3DSA:3.90.1150.10 325 471 4.8E-19 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH01022 80688fa99251cb8561207002ecf24a69 888 Gene3D G3DSA:3.30.1490.20 14 246 3.2E-98 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMJ96_CH01022 80688fa99251cb8561207002ecf24a69 888 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 21 372 8.1E-56 T 12-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 AMJ96_CH01022 80688fa99251cb8561207002ecf24a69 888 SUPERFAMILY SSF56059 1 393 6.47E-139 T 12-10-2018 AMJ96_CH01022 80688fa99251cb8561207002ecf24a69 888 Gene3D G3DSA:3.30.470.20 247 356 3.2E-40 T 12-10-2018 AMJ96_CH01022 80688fa99251cb8561207002ecf24a69 888 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 774 792 - T 12-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AMJ96_CH01022 80688fa99251cb8561207002ecf24a69 888 SUPERFAMILY SSF51621 524 882 2.97E-128 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMJ96_CH01022 80688fa99251cb8561207002ecf24a69 888 SUPERFAMILY SSF52009 402 525 8.89E-36 T 12-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 AMJ96_CH01022 80688fa99251cb8561207002ecf24a69 888 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 463 474 - T 12-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 AMJ96_CH01022 80688fa99251cb8561207002ecf24a69 888 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 3 884 0.0 T 12-10-2018 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMJ96_CH01022 80688fa99251cb8561207002ecf24a69 888 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 530 882 5.2E-88 T 12-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AMJ96_CH01022 80688fa99251cb8561207002ecf24a69 888 PIRSF PIRSF000853 1 888 0.0 T 12-10-2018 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMJ96_CH01022 80688fa99251cb8561207002ecf24a69 888 Gene3D G3DSA:3.20.20.60 545 886 2.9E-146 T 12-10-2018 AMJ96_CH01022 80688fa99251cb8561207002ecf24a69 888 Pfam PF00391 PEP-utilising enzyme, mobile domain 436 516 2.9E-28 T 12-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMJ96_CH01022 80688fa99251cb8561207002ecf24a69 888 Gene3D G3DSA:3.50.30.10 398 522 1.9E-75 T 12-10-2018 AMJ96_CH01022 80688fa99251cb8561207002ecf24a69 888 Gene3D G3DSA:1.20.80.30 114 201 3.2E-98 T 12-10-2018 AMJ96_CH01022 80688fa99251cb8561207002ecf24a69 888 Gene3D G3DSA:1.10.189.10 360 542 1.9E-75 T 12-10-2018 AMJ96_CH04382 51cbc91bfe7dd605012a9c6439f7084b 323 SUPERFAMILY SSF51726 1 318 1.48E-91 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AMJ96_CH04382 51cbc91bfe7dd605012a9c6439f7084b 323 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 1 319 41.488 T 12-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMJ96_CH04382 51cbc91bfe7dd605012a9c6439f7084b 323 Gene3D G3DSA:3.20.20.210 1 320 8.2E-112 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 AMJ96_CH04382 51cbc91bfe7dd605012a9c6439f7084b 323 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 1 316 9.1E-117 T 12-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMJ96_CH04382 51cbc91bfe7dd605012a9c6439f7084b 323 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 115 131 - T 12-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMJ96_CH04382 51cbc91bfe7dd605012a9c6439f7084b 323 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 1 316 7.7E-102 T 12-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AMJ96_CH04352 4f4751af68fdf14d4cd1375953facce0 230 Pfam PF00005 ABC transporter 26 168 4.4E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH04352 4f4751af68fdf14d4cd1375953facce0 230 SUPERFAMILY SSF52540 4 220 7.24E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04352 4f4751af68fdf14d4cd1375953facce0 230 Gene3D G3DSA:3.40.50.300 2 225 4.0E-56 T 12-10-2018 AMJ96_CH04352 4f4751af68fdf14d4cd1375953facce0 230 SMART SM00382 30 217 3.6E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02148 400d010ec5f2268674454cf689a2a56a 261 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 9.8E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02148 400d010ec5f2268674454cf689a2a56a 261 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 9.8E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02148 400d010ec5f2268674454cf689a2a56a 261 Pfam PF07729 FCD domain 110 229 2.6E-24 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH02148 400d010ec5f2268674454cf689a2a56a 261 SUPERFAMILY SSF46785 15 85 5.77E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02148 400d010ec5f2268674454cf689a2a56a 261 Gene3D G3DSA:1.10.10.10 11 87 1.4E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02148 400d010ec5f2268674454cf689a2a56a 261 SMART SM00895 110 233 2.6E-22 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH02148 400d010ec5f2268674454cf689a2a56a 261 SMART SM00345 22 81 2.8E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02148 400d010ec5f2268674454cf689a2a56a 261 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 81 4.6E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02148 400d010ec5f2268674454cf689a2a56a 261 Gene3D G3DSA:1.20.120.530 97 244 4.9E-28 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH02148 400d010ec5f2268674454cf689a2a56a 261 SUPERFAMILY SSF48008 107 240 1.75E-25 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 PRINTS PR00301 70kDa heat shock protein signature 138 158 6.9E-81 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 PRINTS PR00301 70kDa heat shock protein signature 329 345 6.9E-81 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 PRINTS PR00301 70kDa heat shock protein signature 54 62 6.9E-81 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 PRINTS PR00301 70kDa heat shock protein signature 31 43 6.9E-81 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 PRINTS PR00301 70kDa heat shock protein signature 3 16 6.9E-81 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 PRINTS PR00301 70kDa heat shock protein signature 383 402 6.9E-81 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 PRINTS PR00301 70kDa heat shock protein signature 464 480 6.9E-81 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 PRINTS PR00301 70kDa heat shock protein signature 197 207 6.9E-81 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 PRINTS PR00301 70kDa heat shock protein signature 360 380 6.9E-81 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 Pfam PF00012 Hsp70 protein 4 601 1.1E-279 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 Gene3D G3DSA:3.30.420.40 5 372 1.2E-167 T 12-10-2018 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 191 204 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 SUPERFAMILY SSF100934 502 601 8.11E-19 T 12-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 Gene3D G3DSA:3.30.30.30 67 118 1.2E-167 T 12-10-2018 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 SUPERFAMILY SSF53067 4 184 1.91E-67 T 12-10-2018 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 SUPERFAMILY SSF53067 186 377 2.84E-69 T 12-10-2018 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 Gene3D G3DSA:2.60.34.10 378 518 1.5E-65 T 12-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 600 3.7E-299 T 12-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 629 37.862 T 12-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 SUPERFAMILY SSF100920 379 535 7.06E-63 T 12-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 Gene3D G3DSA:3.90.640.10 223 310 1.2E-167 T 12-10-2018 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 Gene3D G3DSA:1.20.1270.10 519 605 1.6E-25 T 12-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 332 346 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMJ96_CH00150 56899170dadb963b14db0c8b916f3306 638 Gene3D G3DSA:3.30.420.40 184 357 1.2E-167 T 12-10-2018 AMJ96_PC00051 f6533b25274082486dd0907425371df0 148 Pfam PF05656 Protein of unknown function (DUF805) 15 137 8.8E-31 T 12-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 AMJ96_CH01806 0c3540400491cb876b687b7dda51bb72 164 Gene3D G3DSA:3.40.50.2020 6 162 9.2E-40 T 12-10-2018 AMJ96_CH01806 0c3540400491cb876b687b7dda51bb72 164 Pfam PF00156 Phosphoribosyl transferase domain 13 153 1.3E-14 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMJ96_CH01806 0c3540400491cb876b687b7dda51bb72 164 SUPERFAMILY SSF53271 7 152 6.96E-33 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like AMJ96_CH01806 0c3540400491cb876b687b7dda51bb72 164 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 4 163 41.522 T 12-10-2018 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22 AMJ96_PD00287 2c71278fa7c6d9c34c464cb7314f4157 461 SMART SM00345 19 78 9.3E-10 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00287 2c71278fa7c6d9c34c464cb7314f4157 461 SUPERFAMILY SSF46785 12 82 6.42E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00287 2c71278fa7c6d9c34c464cb7314f4157 461 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 78 4.8E-11 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00287 2c71278fa7c6d9c34c464cb7314f4157 461 Gene3D G3DSA:3.40.640.10 133 348 8.4E-52 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_PD00287 2c71278fa7c6d9c34c464cb7314f4157 461 Gene3D G3DSA:3.90.1150.10 96 446 8.4E-52 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_PD00287 2c71278fa7c6d9c34c464cb7314f4157 461 Pfam PF00155 Aminotransferase class I and II 162 440 4.3E-11 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_PD00287 2c71278fa7c6d9c34c464cb7314f4157 461 SUPERFAMILY SSF53383 95 449 4.92E-62 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_PD00287 2c71278fa7c6d9c34c464cb7314f4157 461 Gene3D G3DSA:1.10.10.10 9 79 2.3E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01301 e9dbdea9937e2f490bd1296dd8e944b3 358 Pfam PF10098 Uncharacterised protein conserved in bacteria (DUF2336) 95 153 9.1E-9 T 12-10-2018 IPR019285 Protein of unknown function DUF2336 AMJ96_PA00198 74e5fece54b49e7e6a45e152e940db53 335 Pfam PF13377 Periplasmic binding protein-like domain 165 330 1.3E-29 T 12-10-2018 AMJ96_PA00198 74e5fece54b49e7e6a45e152e940db53 335 Gene3D G3DSA:3.40.50.2300 156 288 9.2E-72 T 12-10-2018 AMJ96_PA00198 74e5fece54b49e7e6a45e152e940db53 335 Gene3D G3DSA:1.10.260.40 1 55 1.2E-16 T 12-10-2018 AMJ96_PA00198 74e5fece54b49e7e6a45e152e940db53 335 SMART SM00354 1 68 1.6E-16 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00198 74e5fece54b49e7e6a45e152e940db53 335 SUPERFAMILY SSF53822 55 312 3.53E-56 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PA00198 74e5fece54b49e7e6a45e152e940db53 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 1 43 7.8E-14 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00198 74e5fece54b49e7e6a45e152e940db53 335 SUPERFAMILY SSF47413 1 56 6.75E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PA00198 74e5fece54b49e7e6a45e152e940db53 335 Gene3D G3DSA:3.40.50.2300 59 304 9.2E-72 T 12-10-2018 AMJ96_CH03873 bc0223c80b184c337eea33d050bbd042 262 SUPERFAMILY SSF102215 19 253 2.88E-67 T 12-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 AMJ96_CH03873 bc0223c80b184c337eea33d050bbd042 262 Gene3D G3DSA:3.40.50.10310 15 255 8.2E-59 T 12-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 AMJ96_CH03873 bc0223c80b184c337eea33d050bbd042 262 Pfam PF02633 Creatinine amidohydrolase 19 249 4.0E-54 T 12-10-2018 IPR003785 Creatininase/formamide hydrolase KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 AMJ96_CH04222 3e4e2e81c39fb2ab2309860cef151302 116 SMART SM00938 8 109 2.8E-64 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMJ96_CH04222 3e4e2e81c39fb2ab2309860cef151302 116 PRINTS PR00340 P-II protein signature 87 107 3.9E-41 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMJ96_CH04222 3e4e2e81c39fb2ab2309860cef151302 116 PRINTS PR00340 P-II protein signature 56 79 3.9E-41 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMJ96_CH04222 3e4e2e81c39fb2ab2309860cef151302 116 PRINTS PR00340 P-II protein signature 6 21 3.9E-41 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMJ96_CH04222 3e4e2e81c39fb2ab2309860cef151302 116 PRINTS PR00340 P-II protein signature 27 45 3.9E-41 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMJ96_CH04222 3e4e2e81c39fb2ab2309860cef151302 116 Pfam PF00543 Nitrogen regulatory protein P-II 8 109 2.9E-42 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMJ96_CH04222 3e4e2e81c39fb2ab2309860cef151302 116 ProSitePatterns PS00638 P-II protein C-terminal region signature. 87 100 - T 12-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 AMJ96_CH04222 3e4e2e81c39fb2ab2309860cef151302 116 SUPERFAMILY SSF54913 5 116 1.33E-43 T 12-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta AMJ96_CH04222 3e4e2e81c39fb2ab2309860cef151302 116 PIRSF PIRSF039144 5 116 2.3E-52 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMJ96_CH04222 3e4e2e81c39fb2ab2309860cef151302 116 Gene3D G3DSA:3.30.70.120 1 116 1.1E-46 T 12-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 PRINTS PR00344 Bacterial sensor protein C-terminal signature 737 755 8.0E-18 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 PRINTS PR00344 Bacterial sensor protein C-terminal signature 704 718 8.0E-18 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 PRINTS PR00344 Bacterial sensor protein C-terminal signature 761 774 8.0E-18 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 PRINTS PR00344 Bacterial sensor protein C-terminal signature 722 732 8.0E-18 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 Gene3D G3DSA:3.30.450.20 266 396 1.7E-8 T 12-10-2018 AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 Gene3D G3DSA:3.30.450.20 397 508 1.3E-9 T 12-10-2018 AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 Gene3D G3DSA:1.10.287.130 509 621 4.5E-16 T 12-10-2018 AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 Gene3D G3DSA:3.40.50.2300 3 126 2.0E-11 T 12-10-2018 AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 SMART SM00388 555 623 8.6E-15 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 Gene3D G3DSA:3.30.565.10 627 779 6.2E-41 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 SUPERFAMILY SSF55785 268 393 4.19E-9 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 SMART SM00387 667 777 1.2E-36 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 SMART SM00448 6 120 1.4E-6 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 667 774 1.6E-25 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 SUPERFAMILY SSF52172 7 140 4.98E-18 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 Pfam PF00072 Response regulator receiver domain 19 121 4.9E-6 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 Pfam PF12860 PAS fold 286 399 1.5E-19 T 12-10-2018 AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 Pfam PF12860 PAS fold 144 257 1.1E-21 T 12-10-2018 AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 Gene3D G3DSA:3.30.450.20 127 251 1.0E-7 T 12-10-2018 AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 SUPERFAMILY SSF55874 613 775 1.31E-40 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 SUPERFAMILY SSF47384 540 624 5.49E-18 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 398 517 5.8E-9 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 SUPERFAMILY SSF55785 128 251 3.81E-7 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 SUPERFAMILY SSF55785 403 509 1.01E-9 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 SMART SM00091 279 347 4.6 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 SMART SM00091 138 206 11.0 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 SMART SM00091 400 469 1.7E-4 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 Pfam PF00512 His Kinase A (phospho-acceptor) domain 556 623 5.1E-12 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PD00426 99e83c0fc5660bc573e7b0f5f88d3f14 788 Pfam PF13188 PAS domain 402 449 9.7E-8 T 12-10-2018 IPR000014 PAS domain AMJ96_CH01490 3336aa419e31f235ba50298be26c38ea 82 Gene3D G3DSA:4.10.640.10 2 82 2.2E-28 T 12-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01490 3336aa419e31f235ba50298be26c38ea 82 ProSitePatterns PS00057 Ribosomal protein S18 signature. 30 53 - T 12-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01490 3336aa419e31f235ba50298be26c38ea 82 PRINTS PR00974 Ribosomal protein S18 family signature 69 79 4.6E-18 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01490 3336aa419e31f235ba50298be26c38ea 82 PRINTS PR00974 Ribosomal protein S18 family signature 37 47 4.6E-18 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01490 3336aa419e31f235ba50298be26c38ea 82 PRINTS PR00974 Ribosomal protein S18 family signature 47 54 4.6E-18 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01490 3336aa419e31f235ba50298be26c38ea 82 PRINTS PR00974 Ribosomal protein S18 family signature 55 69 4.6E-18 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01490 3336aa419e31f235ba50298be26c38ea 82 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 11 82 21.111 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01490 3336aa419e31f235ba50298be26c38ea 82 TIGRFAM TIGR00165 S18: ribosomal protein bS18 14 81 1.2E-29 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01490 3336aa419e31f235ba50298be26c38ea 82 Pfam PF01084 Ribosomal protein S18 29 77 9.5E-25 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01490 3336aa419e31f235ba50298be26c38ea 82 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 30 80 4.0E-22 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01490 3336aa419e31f235ba50298be26c38ea 82 SUPERFAMILY SSF46911 10 81 2.22E-27 T 12-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01718 4232ef7db3321fea8a86b1884dd0c08c 278 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 274 44.658 T 12-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AMJ96_CH01718 4232ef7db3321fea8a86b1884dd0c08c 278 Gene3D G3DSA:4.10.950.10 198 275 4.6E-32 T 12-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01718 4232ef7db3321fea8a86b1884dd0c08c 278 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 251 6.6E-53 T 12-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01718 4232ef7db3321fea8a86b1884dd0c08c 278 SUPERFAMILY SSF50249 2 122 3.02E-46 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH01718 4232ef7db3321fea8a86b1884dd0c08c 278 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 274 8.8E-120 T 12-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AMJ96_CH01718 4232ef7db3321fea8a86b1884dd0c08c 278 SMART SM01382 125 253 1.2E-84 T 12-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01718 4232ef7db3321fea8a86b1884dd0c08c 278 SUPERFAMILY SSF50104 127 272 4.33E-58 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMJ96_CH01718 4232ef7db3321fea8a86b1884dd0c08c 278 SMART SM01383 42 118 9.4E-43 T 12-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01718 4232ef7db3321fea8a86b1884dd0c08c 278 PIRSF PIRSF002158 5 276 9.5E-96 T 12-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01718 4232ef7db3321fea8a86b1884dd0c08c 278 ProSitePatterns PS00467 Ribosomal protein L2 signature. 219 230 - T 12-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01718 4232ef7db3321fea8a86b1884dd0c08c 278 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 2.9E-31 T 12-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01718 4232ef7db3321fea8a86b1884dd0c08c 278 Gene3D G3DSA:2.40.50.140 1 114 5.3E-45 T 12-10-2018 AMJ96_CH01718 4232ef7db3321fea8a86b1884dd0c08c 278 Gene3D G3DSA:2.30.30.30 119 197 2.8E-30 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 AMJ96_CH04272 1d8f3e6d1038c2b0fd8467a86a72fda3 1053 SUPERFAMILY SSF52540 136 394 2.13E-37 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04272 1d8f3e6d1038c2b0fd8467a86a72fda3 1053 SMART SM00490 178 267 1.6E-10 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH04272 1d8f3e6d1038c2b0fd8467a86a72fda3 1053 Pfam PF00271 Helicase conserved C-terminal domain 163 266 4.3E-8 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH04272 1d8f3e6d1038c2b0fd8467a86a72fda3 1053 Gene3D G3DSA:3.40.50.300 3 144 2.8E-27 T 12-10-2018 AMJ96_CH04272 1d8f3e6d1038c2b0fd8467a86a72fda3 1053 Gene3D G3DSA:3.40.50.300 148 292 3.1E-31 T 12-10-2018 AMJ96_CH04272 1d8f3e6d1038c2b0fd8467a86a72fda3 1053 SUPERFAMILY SSF52540 9 122 2.83E-8 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04106 35003b86818704bdacdaced276a7c531 159 SUPERFAMILY SSF52833 10 157 1.23E-46 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH04106 35003b86818704bdacdaced276a7c531 159 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 17 156 4.3E-42 T 12-10-2018 AMJ96_CH04106 35003b86818704bdacdaced276a7c531 159 Gene3D G3DSA:3.40.30.10 75 156 2.9E-21 T 12-10-2018 AMJ96_CH04106 35003b86818704bdacdaced276a7c531 159 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 115 133 - T 12-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH04106 35003b86818704bdacdaced276a7c531 159 Gene3D G3DSA:1.10.10.1590 9 74 7.9E-14 T 12-10-2018 AMJ96_CH04106 35003b86818704bdacdaced276a7c531 159 PIRSF PIRSF000216 8 159 1.5E-46 T 12-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH02883 de432b7e7a75895cc43c9e7a035d93c4 303 Pfam PF02567 Phenazine biosynthesis-like protein 8 299 2.5E-57 T 12-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMJ96_CH02883 de432b7e7a75895cc43c9e7a035d93c4 303 Gene3D G3DSA:3.10.310.10 123 290 1.2E-77 T 12-10-2018 AMJ96_CH02883 de432b7e7a75895cc43c9e7a035d93c4 303 PIRSF PIRSF016184 1 303 1.6E-81 T 12-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMJ96_CH02883 de432b7e7a75895cc43c9e7a035d93c4 303 Gene3D G3DSA:3.10.310.10 7 292 1.2E-77 T 12-10-2018 AMJ96_CH02883 de432b7e7a75895cc43c9e7a035d93c4 303 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 7 302 4.0E-61 T 12-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMJ96_CH02883 de432b7e7a75895cc43c9e7a035d93c4 303 SUPERFAMILY SSF54506 4 302 2.27E-60 T 12-10-2018 AMJ96_CH00113 05c49cbe8fdcc985203d1e48bad2820c 338 Gene3D G3DSA:3.40.50.150 161 338 8.5E-39 T 12-10-2018 AMJ96_CH00113 05c49cbe8fdcc985203d1e48bad2820c 338 Pfam PF05175 Methyltransferase small domain 166 334 6.6E-51 T 12-10-2018 IPR007848 Methyltransferase small domain GO:0008168 AMJ96_CH00113 05c49cbe8fdcc985203d1e48bad2820c 338 SUPERFAMILY SSF53335 163 316 4.3E-24 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH00113 05c49cbe8fdcc985203d1e48bad2820c 338 Pfam PF08468 Methyltransferase small domain N-terminal 63 127 1.1E-5 T 12-10-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 AMJ96_CH00113 05c49cbe8fdcc985203d1e48bad2820c 338 Gene3D G3DSA:3.40.50.150 29 133 2.2E-5 T 12-10-2018 AMJ96_CH00113 05c49cbe8fdcc985203d1e48bad2820c 338 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 267 273 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMJ96_CH00726 1eb47ca7a19a8e376868cf77a64908b5 141 Pfam PF03963 Flagellar hook capping protein - N-terminal region 5 74 6.2E-23 T 12-10-2018 IPR005648 Flagellar hook capping protein AMJ96_CH00726 1eb47ca7a19a8e376868cf77a64908b5 141 SUPERFAMILY SSF117143 67 134 4.84E-5 T 12-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like AMJ96_CH00074 115fa8ff1912ace91f432d3314057f54 323 SUPERFAMILY SSF51445 54 320 3.74E-53 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH00074 115fa8ff1912ace91f432d3314057f54 323 Gene3D G3DSA:3.20.20.80 55 322 1.9E-43 T 12-10-2018 AMJ96_CH00074 115fa8ff1912ace91f432d3314057f54 323 Pfam PF02156 Glycosyl hydrolase family 26 129 237 2.4E-7 T 12-10-2018 IPR022790 Glycosyl hydrolase family 26 domain GO:0004553 AMJ96_CH00822 aa97a1cea54ec98ca01823f3f837ecff 318 Gene3D G3DSA:3.40.190.10 163 256 3.8E-55 T 12-10-2018 AMJ96_CH00822 aa97a1cea54ec98ca01823f3f837ecff 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 2.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH00822 aa97a1cea54ec98ca01823f3f837ecff 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 2.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH00822 aa97a1cea54ec98ca01823f3f837ecff 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 2.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH00822 aa97a1cea54ec98ca01823f3f837ecff 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 2.3E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH00822 aa97a1cea54ec98ca01823f3f837ecff 318 SUPERFAMILY SSF46785 5 113 8.81E-25 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00822 aa97a1cea54ec98ca01823f3f837ecff 318 Gene3D G3DSA:3.40.190.10 97 263 3.8E-55 T 12-10-2018 AMJ96_CH00822 aa97a1cea54ec98ca01823f3f837ecff 318 Gene3D G3DSA:1.10.10.10 1 86 5.4E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00822 aa97a1cea54ec98ca01823f3f837ecff 318 SUPERFAMILY SSF53850 91 280 8.79E-30 T 12-10-2018 AMJ96_CH00822 aa97a1cea54ec98ca01823f3f837ecff 318 Pfam PF03466 LysR substrate binding domain 90 266 2.3E-30 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH01998 cb6bde08d42200569722d4f4fcaeaf11 298 Pfam PF13468 Glyoxalase-like domain 11 198 1.0E-28 T 12-10-2018 IPR025870 Glyoxalase-like domain AMJ96_CH01998 cb6bde08d42200569722d4f4fcaeaf11 298 Gene3D G3DSA:3.10.180.10 9 156 5.7E-6 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01998 cb6bde08d42200569722d4f4fcaeaf11 298 SUPERFAMILY SSF54593 180 275 3.42E-5 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01998 cb6bde08d42200569722d4f4fcaeaf11 298 SUPERFAMILY SSF54593 10 131 4.61E-6 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH03439 085131dce5c9ed24884c46cc182948a0 439 PIRSF PIRSF000124 1 433 3.8E-143 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AMJ96_CH03439 085131dce5c9ed24884c46cc182948a0 439 SMART SM00984 317 418 2.6E-51 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMJ96_CH03439 085131dce5c9ed24884c46cc182948a0 439 Gene3D G3DSA:3.40.50.720 1 199 1.1E-81 T 12-10-2018 AMJ96_CH03439 085131dce5c9ed24884c46cc182948a0 439 SUPERFAMILY SSF48179 201 294 9.69E-32 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_CH03439 085131dce5c9ed24884c46cc182948a0 439 SUPERFAMILY SSF52413 302 428 3.53E-40 T 12-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 AMJ96_CH03439 085131dce5c9ed24884c46cc182948a0 439 SUPERFAMILY SSF51735 1 205 2.98E-53 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03439 085131dce5c9ed24884c46cc182948a0 439 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 414 2.6E-140 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AMJ96_CH03439 085131dce5c9ed24884c46cc182948a0 439 PIRSF PIRSF500134 1 436 5.3E-182 T 12-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 AMJ96_CH03439 085131dce5c9ed24884c46cc182948a0 439 Gene3D G3DSA:3.40.50.720 233 438 3.3E-78 T 12-10-2018 AMJ96_CH03439 085131dce5c9ed24884c46cc182948a0 439 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 201 293 2.4E-36 T 12-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMJ96_CH03439 085131dce5c9ed24884c46cc182948a0 439 Gene3D G3DSA:1.20.5.100 200 231 3.1E-19 T 12-10-2018 AMJ96_CH03439 085131dce5c9ed24884c46cc182948a0 439 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 317 417 4.0E-33 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMJ96_CH03439 085131dce5c9ed24884c46cc182948a0 439 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 183 1.4E-67 T 12-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMJ96_CH00050 1c50dc4194c061fa1b190f708838cbd7 435 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 435 42.134 T 12-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 AMJ96_CH00050 1c50dc4194c061fa1b190f708838cbd7 435 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 101 1.5E-5 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMJ96_CH00050 1c50dc4194c061fa1b190f708838cbd7 435 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 327 397 7.9E-8 T 12-10-2018 IPR019489 Clp ATPase, C-terminal AMJ96_CH00050 1c50dc4194c061fa1b190f708838cbd7 435 SMART SM01086 327 421 9.7E-23 T 12-10-2018 IPR019489 Clp ATPase, C-terminal AMJ96_CH00050 1c50dc4194c061fa1b190f708838cbd7 435 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 5 435 1.3E-182 T 12-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 AMJ96_CH00050 1c50dc4194c061fa1b190f708838cbd7 435 SUPERFAMILY SSF52540 6 433 5.87E-82 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00050 1c50dc4194c061fa1b190f708838cbd7 435 Pfam PF07724 AAA domain (Cdc48 subfamily) 197 321 4.2E-36 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMJ96_CH00050 1c50dc4194c061fa1b190f708838cbd7 435 Gene3D G3DSA:1.10.8.60 327 432 9.5E-39 T 12-10-2018 AMJ96_CH00050 1c50dc4194c061fa1b190f708838cbd7 435 SMART SM00382 49 324 3.9E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PB00404 d8bed4e821761680864040f2e3181871 529 Gene3D G3DSA:2.20.28.20 143 176 2.0E-93 T 12-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMJ96_PB00404 d8bed4e821761680864040f2e3181871 529 Gene3D G3DSA:3.40.50.620 11 378 2.0E-93 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_PB00404 d8bed4e821761680864040f2e3181871 529 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 15 26 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_PB00404 d8bed4e821761680864040f2e3181871 529 Pfam PF09334 tRNA synthetases class I (M) 12 380 3.4E-70 T 12-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_PB00404 d8bed4e821761680864040f2e3181871 529 SUPERFAMILY SSF52374 7 381 3.1E-67 T 12-10-2018 AMJ96_CH04328 959163917f6d556a3633f06dc857b4c9 355 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 3 353 6.9E-143 T 12-10-2018 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 AMJ96_CH04328 959163917f6d556a3633f06dc857b4c9 355 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH04328 959163917f6d556a3633f06dc857b4c9 355 SUPERFAMILY SSF50331 236 352 1.31E-19 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH04328 959163917f6d556a3633f06dc857b4c9 355 SMART SM00382 23 210 1.5E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04328 959163917f6d556a3633f06dc857b4c9 355 Gene3D G3DSA:2.40.50.100 291 354 3.3E-15 T 12-10-2018 AMJ96_CH04328 959163917f6d556a3633f06dc857b4c9 355 SUPERFAMILY SSF52540 11 227 5.8E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04328 959163917f6d556a3633f06dc857b4c9 355 Gene3D G3DSA:3.40.50.300 3 233 1.6E-62 T 12-10-2018 AMJ96_CH04328 959163917f6d556a3633f06dc857b4c9 355 Pfam PF00005 ABC transporter 22 160 4.3E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH04328 959163917f6d556a3633f06dc857b4c9 355 Pfam PF03459 TOBE domain 293 352 1.6E-12 T 12-10-2018 IPR005116 Transport-associated OB, type 1 AMJ96_PA00174 b7974ce03517a5fa4de740263c0689f9 194 Pfam PF00857 Isochorismatase family 10 179 2.9E-27 T 12-10-2018 IPR000868 Isochorismatase-like GO:0003824 AMJ96_PA00174 b7974ce03517a5fa4de740263c0689f9 194 Gene3D G3DSA:3.40.50.850 9 194 3.2E-30 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMJ96_PA00174 b7974ce03517a5fa4de740263c0689f9 194 SUPERFAMILY SSF52499 10 190 3.92E-35 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMJ96_PA00228 ef71b651595ef143e8b9837c61c7d86b 450 SUPERFAMILY SSF51679 1 435 1.83E-129 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_PA00228 ef71b651595ef143e8b9837c61c7d86b 450 Pfam PF00296 Luciferase-like monooxygenase 17 380 6.7E-56 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMJ96_PA00228 ef71b651595ef143e8b9837c61c7d86b 450 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 7 429 1.3E-175 T 12-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AMJ96_PA00228 ef71b651595ef143e8b9837c61c7d86b 450 Gene3D G3DSA:3.20.20.30 1 448 4.5E-160 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_PA00228 ef71b651595ef143e8b9837c61c7d86b 450 PIRSF PIRSF000337 1 444 1.3E-154 T 12-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AMJ96_PD00618 3b681cb49e354f748f1090c855635bef 409 Pfam PF13378 Enolase C-terminal domain-like 148 359 9.4E-63 T 12-10-2018 IPR029065 Enolase C-terminal domain-like AMJ96_PD00618 3b681cb49e354f748f1090c855635bef 409 Gene3D G3DSA:3.20.20.120 130 366 3.5E-78 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_PD00618 3b681cb49e354f748f1090c855635bef 409 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 37 131 2.5E-17 T 12-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMJ96_PD00618 3b681cb49e354f748f1090c855635bef 409 SUPERFAMILY SSF54826 1 136 1.2E-28 T 12-10-2018 AMJ96_PD00618 3b681cb49e354f748f1090c855635bef 409 Gene3D G3DSA:3.30.390.10 1 129 1.2E-31 T 12-10-2018 IPR029017 Enolase-like, N-terminal AMJ96_PD00618 3b681cb49e354f748f1090c855635bef 409 SMART SM00922 147 239 2.8E-18 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMJ96_PD00618 3b681cb49e354f748f1090c855635bef 409 SUPERFAMILY SSF51604 119 366 2.23E-74 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_CH02871 2cd57500ca9acec5704af5ca195a1ae1 316 SMART SM00382 37 205 1.0E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02871 2cd57500ca9acec5704af5ca195a1ae1 316 Pfam PF00005 ABC transporter 29 156 2.3E-22 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02871 2cd57500ca9acec5704af5ca195a1ae1 316 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02871 2cd57500ca9acec5704af5ca195a1ae1 316 SUPERFAMILY SSF52540 8 225 4.61E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02871 2cd57500ca9acec5704af5ca195a1ae1 316 Gene3D G3DSA:3.40.50.300 4 252 1.6E-50 T 12-10-2018 AMJ96_PC00215 2b8d7ccf141971199dd3039d2ae78b7a 718 Gene3D G3DSA:3.20.20.80 143 583 7.0E-165 T 12-10-2018 AMJ96_PC00215 2b8d7ccf141971199dd3039d2ae78b7a 718 SUPERFAMILY SSF51011 589 690 1.44E-15 T 12-10-2018 AMJ96_PC00215 2b8d7ccf141971199dd3039d2ae78b7a 718 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 14 102 3.4E-17 T 12-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 AMJ96_PC00215 2b8d7ccf141971199dd3039d2ae78b7a 718 Gene3D G3DSA:2.60.40.1180 590 691 1.0E-11 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta AMJ96_PC00215 2b8d7ccf141971199dd3039d2ae78b7a 718 SMART SM00642 161 569 7.8E-7 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_PC00215 2b8d7ccf141971199dd3039d2ae78b7a 718 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 13 690 0.0 T 12-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 AMJ96_PC00215 2b8d7ccf141971199dd3039d2ae78b7a 718 SUPERFAMILY SSF51445 140 576 1.16E-121 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_PC00215 2b8d7ccf141971199dd3039d2ae78b7a 718 Pfam PF00128 Alpha amylase, catalytic domain 195 534 4.8E-14 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_PC00215 2b8d7ccf141971199dd3039d2ae78b7a 718 Gene3D G3DSA:2.60.40.10 11 142 1.0E-46 T 12-10-2018 IPR013783 Immunoglobulin-like fold AMJ96_PC00215 2b8d7ccf141971199dd3039d2ae78b7a 718 SUPERFAMILY SSF81296 14 150 3.92E-45 T 12-10-2018 IPR014756 Immunoglobulin E-set AMJ96_CH03927 651664437f9cb0e38707e005930bd74f 290 Gene3D G3DSA:3.30.160.70 117 202 3.0E-9 T 12-10-2018 AMJ96_CH03927 651664437f9cb0e38707e005930bd74f 290 SUPERFAMILY SSF53155 124 198 3.92E-17 T 12-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AMJ96_CH03927 651664437f9cb0e38707e005930bd74f 290 SUPERFAMILY SSF46767 206 287 7.32E-30 T 12-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 AMJ96_CH03927 651664437f9cb0e38707e005930bd74f 290 SMART SM00342 35 118 2.1E-13 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH03927 651664437f9cb0e38707e005930bd74f 290 SUPERFAMILY SSF46689 18 69 4.21E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03927 651664437f9cb0e38707e005930bd74f 290 Gene3D G3DSA:1.10.10.60 18 116 2.8E-20 T 12-10-2018 AMJ96_CH03927 651664437f9cb0e38707e005930bd74f 290 Gene3D G3DSA:1.10.10.10 206 290 7.0E-32 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03927 651664437f9cb0e38707e005930bd74f 290 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 208 287 1.4E-28 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AMJ96_CH03927 651664437f9cb0e38707e005930bd74f 290 SUPERFAMILY SSF46689 73 121 4.39E-5 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03927 651664437f9cb0e38707e005930bd74f 290 Pfam PF12833 Helix-turn-helix domain 41 119 2.1E-16 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH03927 651664437f9cb0e38707e005930bd74f 290 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 207 285 7.3E-32 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AMJ96_CH01822 04420f4bfabe387ffa2a2a60d9c384ba 372 SUPERFAMILY SSF51735 137 303 3.83E-51 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01822 04420f4bfabe387ffa2a2a60d9c384ba 372 PIRSF PIRSF000183 1 370 1.5E-149 T 12-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 AMJ96_CH01822 04420f4bfabe387ffa2a2a60d9c384ba 372 SUPERFAMILY SSF52283 1 359 5.36E-64 T 12-10-2018 AMJ96_CH01822 04420f4bfabe387ffa2a2a60d9c384ba 372 SMART SM01003 4 137 1.0E-78 T 12-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMJ96_CH01822 04420f4bfabe387ffa2a2a60d9c384ba 372 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 1 369 7.9E-154 T 12-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 AMJ96_CH01822 04420f4bfabe387ffa2a2a60d9c384ba 372 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 8.4E-47 T 12-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMJ96_CH01822 04420f4bfabe387ffa2a2a60d9c384ba 372 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 173 198 - T 12-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 AMJ96_CH01822 04420f4bfabe387ffa2a2a60d9c384ba 372 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 351 1.5E-82 T 12-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMJ96_CH01822 04420f4bfabe387ffa2a2a60d9c384ba 372 Gene3D G3DSA:3.40.50.720 3 352 3.8E-136 T 12-10-2018 AMJ96_CH01822 04420f4bfabe387ffa2a2a60d9c384ba 372 Gene3D G3DSA:3.40.50.720 130 305 3.8E-136 T 12-10-2018 AMJ96_CH01822 04420f4bfabe387ffa2a2a60d9c384ba 372 SMART SM01002 149 297 2.4E-92 T 12-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMJ96_CH03570 9935da7871d18c5bbcdc0a5d9ac8aae4 205 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 30 197 1.3E-58 T 12-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AMJ96_CH03570 9935da7871d18c5bbcdc0a5d9ac8aae4 205 TIGRFAM TIGR00567 3mg: DNA-3-methyladenine glycosylase 29 201 1.7E-50 T 12-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AMJ96_CH03570 9935da7871d18c5bbcdc0a5d9ac8aae4 205 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 28 201 30.224 T 12-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AMJ96_CH03570 9935da7871d18c5bbcdc0a5d9ac8aae4 205 Gene3D G3DSA:3.10.300.10 26 204 1.5E-57 T 12-10-2018 IPR036995 Methylpurine-DNA glycosylase superfamily GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AMJ96_CH03570 9935da7871d18c5bbcdc0a5d9ac8aae4 205 SUPERFAMILY SSF50486 28 203 3.14E-59 T 12-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 AMJ96_CH00419 0226fa72eccdf4ec51dd09a59f3dd58e 316 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 48 245 3.5E-60 T 12-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 AMJ96_CH00419 0226fa72eccdf4ec51dd09a59f3dd58e 316 Pfam PF01343 Peptidase family S49 105 250 6.7E-39 T 12-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AMJ96_CH00419 0226fa72eccdf4ec51dd09a59f3dd58e 316 SUPERFAMILY SSF52096 35 240 2.08E-37 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_CH00419 0226fa72eccdf4ec51dd09a59f3dd58e 316 Gene3D G3DSA:3.90.226.10 52 244 8.5E-59 T 12-10-2018 AMJ96_CH00419 0226fa72eccdf4ec51dd09a59f3dd58e 316 Gene3D G3DSA:3.40.1750.20 144 210 8.5E-59 T 12-10-2018 AMJ96_CH00146 f6a51b085c1872b87a07953c5b1de7b1 374 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 6 362 2.3E-56 T 12-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 AMJ96_CH00146 f6a51b085c1872b87a07953c5b1de7b1 374 ProSitePatterns PS00617 RecF protein signature 1. 125 145 - T 12-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 AMJ96_CH00146 f6a51b085c1872b87a07953c5b1de7b1 374 Gene3D G3DSA:1.20.1050.90 128 315 1.8E-81 T 12-10-2018 AMJ96_CH00146 f6a51b085c1872b87a07953c5b1de7b1 374 Gene3D G3DSA:3.40.50.300 10 351 1.8E-81 T 12-10-2018 AMJ96_CH00146 f6a51b085c1872b87a07953c5b1de7b1 374 SUPERFAMILY SSF52540 7 372 1.87E-36 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00146 f6a51b085c1872b87a07953c5b1de7b1 374 Pfam PF02463 RecF/RecN/SMC N terminal domain 7 358 1.2E-16 T 12-10-2018 IPR003395 RecF/RecN/SMC, N-terminal AMJ96_CH00146 f6a51b085c1872b87a07953c5b1de7b1 374 SMART SM00382 26 369 1.0E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00146 f6a51b085c1872b87a07953c5b1de7b1 374 ProSitePatterns PS00618 RecF protein signature 2. 316 334 - T 12-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 AMJ96_CH00146 f6a51b085c1872b87a07953c5b1de7b1 374 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 374 93.407 T 12-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 AMJ96_CH01084 f51ecd4cbab6d4fee83948052b2b0ecb 822 SMART SM00044 546 749 5.0E-15 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH01084 f51ecd4cbab6d4fee83948052b2b0ecb 822 SMART SM00304 359 411 9.6E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH01084 f51ecd4cbab6d4fee83948052b2b0ecb 822 Pfam PF00672 HAMP domain 359 407 8.5E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH01084 f51ecd4cbab6d4fee83948052b2b0ecb 822 Pfam PF12860 PAS fold 428 543 7.8E-24 T 12-10-2018 AMJ96_CH01084 f51ecd4cbab6d4fee83948052b2b0ecb 822 SUPERFAMILY SSF158472 359 407 4.45E-6 T 12-10-2018 AMJ96_CH01084 f51ecd4cbab6d4fee83948052b2b0ecb 822 Gene3D G3DSA:3.30.450.20 415 544 2.6E-10 T 12-10-2018 AMJ96_CH01084 f51ecd4cbab6d4fee83948052b2b0ecb 822 Gene3D G3DSA:1.20.58.920 49 164 1.8E-6 T 12-10-2018 IPR038188 TorS, sensor domain superfamily AMJ96_CH01084 f51ecd4cbab6d4fee83948052b2b0ecb 822 Gene3D G3DSA:3.30.70.1230 578 775 1.3E-69 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH01084 f51ecd4cbab6d4fee83948052b2b0ecb 822 Gene3D G3DSA:1.20.1480.50 316 414 1.6E-7 T 12-10-2018 AMJ96_CH01084 f51ecd4cbab6d4fee83948052b2b0ecb 822 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 583 765 1.2E-33 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH01084 f51ecd4cbab6d4fee83948052b2b0ecb 822 SUPERFAMILY SSF55073 580 768 3.61E-57 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH01084 f51ecd4cbab6d4fee83948052b2b0ecb 822 SUPERFAMILY SSF55785 414 536 8.79E-7 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH02461 7ac46250cde32fa12c54cb23ae75b971 326 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 316 3.1E-50 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH04257 d91b36e60f68d05bcf269a808ca11180 258 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 41 59 1.7E-7 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMJ96_CH04257 d91b36e60f68d05bcf269a808ca11180 258 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 27 41 1.7E-7 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMJ96_CH04257 d91b36e60f68d05bcf269a808ca11180 258 Gene3D G3DSA:1.10.10.10 7 98 4.6E-5 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH04257 d91b36e60f68d05bcf269a808ca11180 258 Pfam PF08220 DeoR-like helix-turn-helix domain 9 60 4.9E-12 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMJ96_CH04257 d91b36e60f68d05bcf269a808ca11180 258 SMART SM00420 9 61 3.3E-8 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMJ96_CH04257 d91b36e60f68d05bcf269a808ca11180 258 SUPERFAMILY SSF100950 78 233 5.13E-23 T 12-10-2018 IPR037171 NagB/RpiA transferase-like AMJ96_CH04257 d91b36e60f68d05bcf269a808ca11180 258 ProSitePatterns PS00894 DeoR-type HTH domain signature. 9 43 - T 12-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AMJ96_CH04257 d91b36e60f68d05bcf269a808ca11180 258 Pfam PF00455 DeoR C terminal sensor domain 77 233 3.5E-40 T 12-10-2018 IPR014036 DeoR C-terminal sensor domain AMJ96_CH04257 d91b36e60f68d05bcf269a808ca11180 258 SUPERFAMILY SSF46785 5 58 1.8E-8 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH04257 d91b36e60f68d05bcf269a808ca11180 258 SMART SM01134 74 235 1.1E-54 T 12-10-2018 AMJ96_PD00604 b74d04db7de6f9460938a6ce4d3a32d8 402 Pfam PF01547 Bacterial extracellular solute-binding protein 37 321 6.0E-46 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PD00604 b74d04db7de6f9460938a6ce4d3a32d8 402 SUPERFAMILY SSF53850 21 397 2.82E-89 T 12-10-2018 AMJ96_PD00604 b74d04db7de6f9460938a6ce4d3a32d8 402 Gene3D G3DSA:3.40.190.10 23 402 1.4E-95 T 12-10-2018 AMJ96_CH04017 f7c584ba174cb360ad1192548ae42f86 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 1.2E-14 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH04017 f7c584ba174cb360ad1192548ae42f86 192 SUPERFAMILY SSF48498 79 186 2.58E-22 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH04017 f7c584ba174cb360ad1192548ae42f86 192 Gene3D G3DSA:1.10.357.10 52 186 3.5E-29 T 12-10-2018 AMJ96_CH04017 f7c584ba174cb360ad1192548ae42f86 192 SUPERFAMILY SSF46689 2 77 4.31E-18 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH04017 f7c584ba174cb360ad1192548ae42f86 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 1.7E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH04017 f7c584ba174cb360ad1192548ae42f86 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 1.7E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH04017 f7c584ba174cb360ad1192548ae42f86 192 Gene3D G3DSA:1.10.10.60 5 51 1.8E-20 T 12-10-2018 AMJ96_PA00114 8a9bb398aa1c9077e444d34bacc34a91 457 ProDom PD027657 PLASMID TRANSPOSASE TRANSPOSABLE DNA Y4JM Y4BF RIORF49 DNA-BINDING ELEMENT RECOMBINATION 414 457 2.0E-5 T 12-10-2018 AMJ96_PA00114 8a9bb398aa1c9077e444d34bacc34a91 457 SUPERFAMILY SSF53098 132 292 6.98E-18 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_PA00114 8a9bb398aa1c9077e444d34bacc34a91 457 Gene3D G3DSA:3.30.420.10 130 291 2.2E-10 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_PA00114 8a9bb398aa1c9077e444d34bacc34a91 457 SUPERFAMILY SSF46689 9 118 1.27E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PA00114 8a9bb398aa1c9077e444d34bacc34a91 457 Pfam PF13551 Winged helix-turn helix 13 74 3.8E-11 T 12-10-2018 AMJ96_PD00112 8a9bb398aa1c9077e444d34bacc34a91 457 ProDom PD027657 PLASMID TRANSPOSASE TRANSPOSABLE DNA Y4JM Y4BF RIORF49 DNA-BINDING ELEMENT RECOMBINATION 414 457 2.0E-5 T 12-10-2018 AMJ96_PD00112 8a9bb398aa1c9077e444d34bacc34a91 457 SUPERFAMILY SSF53098 132 292 6.98E-18 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_PD00112 8a9bb398aa1c9077e444d34bacc34a91 457 Gene3D G3DSA:3.30.420.10 130 291 2.2E-10 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_PD00112 8a9bb398aa1c9077e444d34bacc34a91 457 SUPERFAMILY SSF46689 9 118 1.27E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00112 8a9bb398aa1c9077e444d34bacc34a91 457 Pfam PF13551 Winged helix-turn helix 13 74 3.8E-11 T 12-10-2018 AMJ96_PB00273 8a9bb398aa1c9077e444d34bacc34a91 457 ProDom PD027657 PLASMID TRANSPOSASE TRANSPOSABLE DNA Y4JM Y4BF RIORF49 DNA-BINDING ELEMENT RECOMBINATION 414 457 2.0E-5 T 12-10-2018 AMJ96_PB00273 8a9bb398aa1c9077e444d34bacc34a91 457 SUPERFAMILY SSF53098 132 292 6.98E-18 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_PB00273 8a9bb398aa1c9077e444d34bacc34a91 457 Gene3D G3DSA:3.30.420.10 130 291 2.2E-10 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_PB00273 8a9bb398aa1c9077e444d34bacc34a91 457 SUPERFAMILY SSF46689 9 118 1.27E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PB00273 8a9bb398aa1c9077e444d34bacc34a91 457 Pfam PF13551 Winged helix-turn helix 13 74 3.8E-11 T 12-10-2018 AMJ96_CH02207 8a9bb398aa1c9077e444d34bacc34a91 457 ProDom PD027657 PLASMID TRANSPOSASE TRANSPOSABLE DNA Y4JM Y4BF RIORF49 DNA-BINDING ELEMENT RECOMBINATION 414 457 2.0E-5 T 12-10-2018 AMJ96_CH02207 8a9bb398aa1c9077e444d34bacc34a91 457 SUPERFAMILY SSF53098 132 292 6.98E-18 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_CH02207 8a9bb398aa1c9077e444d34bacc34a91 457 Gene3D G3DSA:3.30.420.10 130 291 2.2E-10 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_CH02207 8a9bb398aa1c9077e444d34bacc34a91 457 SUPERFAMILY SSF46689 9 118 1.27E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02207 8a9bb398aa1c9077e444d34bacc34a91 457 Pfam PF13551 Winged helix-turn helix 13 74 3.8E-11 T 12-10-2018 AMJ96_CH00079 0653c17e9f0f3369a5272545fce1342a 425 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 126 5.8E-24 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_CH00079 0653c17e9f0f3369a5272545fce1342a 425 SUPERFAMILY SSF55347 133 321 2.78E-29 T 12-10-2018 AMJ96_CH00079 0653c17e9f0f3369a5272545fce1342a 425 SUPERFAMILY SSF51735 3 159 8.62E-40 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00079 0653c17e9f0f3369a5272545fce1342a 425 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 139 214 2.9E-15 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AMJ96_CH00079 0653c17e9f0f3369a5272545fce1342a 425 Gene3D G3DSA:3.40.50.720 1 129 1.7E-27 T 12-10-2018 AMJ96_CH03287 5815156ec981e13facf59b992ddc69f5 442 Pfam PF14378 PAP2 superfamily 72 202 2.7E-6 T 12-10-2018 IPR026841 Inositolphosphotransferase Aur1/Ipt1 AMJ96_CH03287 5815156ec981e13facf59b992ddc69f5 442 SUPERFAMILY SSF52799 293 423 5.23E-12 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMJ96_CH03287 5815156ec981e13facf59b992ddc69f5 442 Gene3D G3DSA:3.90.190.10 313 439 9.4E-8 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMJ96_CH01991 8fdde6b9975aa185a17e9ffbecee29b2 272 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 111 145 3.9E-6 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH01991 8fdde6b9975aa185a17e9ffbecee29b2 272 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 19 54 9.1E-8 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH01991 8fdde6b9975aa185a17e9ffbecee29b2 272 PIRSF PIRSF000456 6 272 2.3E-100 T 12-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 AMJ96_CH01991 8fdde6b9975aa185a17e9ffbecee29b2 272 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 10 263 4.8E-103 T 12-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 AMJ96_CH01991 8fdde6b9975aa185a17e9ffbecee29b2 272 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 7 265 43.031 T 12-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 AMJ96_CH01991 8fdde6b9975aa185a17e9ffbecee29b2 272 Gene3D G3DSA:2.160.10.10 3 195 3.3E-46 T 12-10-2018 AMJ96_CH01991 8fdde6b9975aa185a17e9ffbecee29b2 272 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 182 261 1.1E-19 T 12-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 AMJ96_CH01991 8fdde6b9975aa185a17e9ffbecee29b2 272 SUPERFAMILY SSF51161 5 258 8.25E-68 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily AMJ96_CH01991 8fdde6b9975aa185a17e9ffbecee29b2 272 Gene3D G3DSA:1.20.1180.10 199 264 1.9E-12 T 12-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 AMJ96_CH01470 cca82f9e317291f148ec5d154748dfe4 320 Pfam PF00561 alpha/beta hydrolase fold 42 298 1.9E-28 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH01470 cca82f9e317291f148ec5d154748dfe4 320 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 13 315 1.0E-123 T 12-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 AMJ96_CH01470 cca82f9e317291f148ec5d154748dfe4 320 PIRSF PIRSF006431 4 318 1.2E-135 T 12-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 AMJ96_CH01470 cca82f9e317291f148ec5d154748dfe4 320 Gene3D G3DSA:3.40.50.1820 3 318 2.1E-104 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01470 cca82f9e317291f148ec5d154748dfe4 320 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 110 124 8.4E-14 T 12-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AMJ96_CH01470 cca82f9e317291f148ec5d154748dfe4 320 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 67 78 8.4E-14 T 12-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AMJ96_CH01470 cca82f9e317291f148ec5d154748dfe4 320 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 41 49 8.4E-14 T 12-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AMJ96_CH01470 cca82f9e317291f148ec5d154748dfe4 320 PRINTS PR00111 Alpha/beta hydrolase fold signature 124 137 4.2E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH01470 cca82f9e317291f148ec5d154748dfe4 320 PRINTS PR00111 Alpha/beta hydrolase fold signature 64 79 4.2E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH01470 cca82f9e317291f148ec5d154748dfe4 320 PRINTS PR00111 Alpha/beta hydrolase fold signature 110 123 4.2E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH01470 cca82f9e317291f148ec5d154748dfe4 320 SUPERFAMILY SSF53474 4 300 4.67E-61 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01163 6f8c952de846284ccedb5fb7a45a3f08 317 Pfam PF05368 NmrA-like family 9 242 4.6E-44 T 12-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 AMJ96_CH01163 6f8c952de846284ccedb5fb7a45a3f08 317 Gene3D G3DSA:3.90.25.10 157 303 2.8E-69 T 12-10-2018 AMJ96_CH01163 6f8c952de846284ccedb5fb7a45a3f08 317 Gene3D G3DSA:3.40.50.720 8 296 2.8E-69 T 12-10-2018 AMJ96_CH01163 6f8c952de846284ccedb5fb7a45a3f08 317 SUPERFAMILY SSF51735 6 282 6.23E-52 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH04098 9b63c5c30a3ce709a345f90fec9c523d 311 ProSitePatterns PS01053 Arginase family signature. 229 250 - T 12-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 AMJ96_CH04098 9b63c5c30a3ce709a345f90fec9c523d 311 TIGRFAM TIGR01229 rocF_arginase: arginase 10 301 1.6E-94 T 12-10-2018 IPR014033 Arginase GO:0004053|GO:0006525|GO:0046872 KEGG: 00220+3.5.3.1|KEGG: 00330+3.5.3.1|MetaCyc: PWY-31|MetaCyc: PWY-4984|MetaCyc: PWY-6305|MetaCyc: PWY-6922|Reactome: R-HSA-70635 AMJ96_CH04098 9b63c5c30a3ce709a345f90fec9c523d 311 PRINTS PR00116 Arginase signature 124 151 2.3E-47 T 12-10-2018 IPR006035 Ureohydrolase GO:0046872 AMJ96_CH04098 9b63c5c30a3ce709a345f90fec9c523d 311 PRINTS PR00116 Arginase signature 177 195 2.3E-47 T 12-10-2018 IPR006035 Ureohydrolase GO:0046872 AMJ96_CH04098 9b63c5c30a3ce709a345f90fec9c523d 311 PRINTS PR00116 Arginase signature 97 112 2.3E-47 T 12-10-2018 IPR006035 Ureohydrolase GO:0046872 AMJ96_CH04098 9b63c5c30a3ce709a345f90fec9c523d 311 PRINTS PR00116 Arginase signature 226 255 2.3E-47 T 12-10-2018 IPR006035 Ureohydrolase GO:0046872 AMJ96_CH04098 9b63c5c30a3ce709a345f90fec9c523d 311 PRINTS PR00116 Arginase signature 261 275 2.3E-47 T 12-10-2018 IPR006035 Ureohydrolase GO:0046872 AMJ96_CH04098 9b63c5c30a3ce709a345f90fec9c523d 311 Gene3D G3DSA:3.40.800.10 1 307 8.5E-98 T 12-10-2018 AMJ96_CH04098 9b63c5c30a3ce709a345f90fec9c523d 311 SUPERFAMILY SSF52768 6 308 5.58E-91 T 12-10-2018 IPR023696 Ureohydrolase domain superfamily AMJ96_CH04098 9b63c5c30a3ce709a345f90fec9c523d 311 Pfam PF00491 Arginase family 7 299 1.9E-79 T 12-10-2018 IPR006035 Ureohydrolase GO:0046872 AMJ96_CH04098 9b63c5c30a3ce709a345f90fec9c523d 311 PIRSF PIRSF036979 1 299 6.4E-34 T 12-10-2018 IPR006035 Ureohydrolase GO:0046872 AMJ96_CH04177 adf8186338532c2caf42fe360b8a514a 409 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 23 388 71.109 T 12-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 AMJ96_CH04177 adf8186338532c2caf42fe360b8a514a 409 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 21 392 1.2E-117 T 12-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 AMJ96_CH04177 adf8186338532c2caf42fe360b8a514a 409 Pfam PF04055 Radical SAM superfamily 136 314 2.7E-16 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMJ96_CH04177 adf8186338532c2caf42fe360b8a514a 409 Gene3D G3DSA:3.20.20.70 89 373 9.4E-101 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH04177 adf8186338532c2caf42fe360b8a514a 409 Gene3D G3DSA:1.10.150.530 23 88 6.3E-13 T 12-10-2018 AMJ96_CH04177 adf8186338532c2caf42fe360b8a514a 409 PIRSF PIRSF006004 15 400 1.9E-143 T 12-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 AMJ96_CH04177 adf8186338532c2caf42fe360b8a514a 409 SUPERFAMILY SSF102114 132 368 3.14E-12 T 12-10-2018 AMJ96_CH01658 b6666d41173db849d315f3a404c27ff3 1165 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 19 1046 0.0 T 12-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH01658 b6666d41173db849d315f3a404c27ff3 1165 SMART SM00481 20 87 9.5E-17 T 12-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal AMJ96_CH01658 b6666d41173db849d315f3a404c27ff3 1165 Gene3D G3DSA:1.10.10.1600 461 536 2.1E-26 T 12-10-2018 AMJ96_CH01658 b6666d41173db849d315f3a404c27ff3 1165 SUPERFAMILY SSF89550 19 286 8.63E-9 T 12-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AMJ96_CH01658 b6666d41173db849d315f3a404c27ff3 1165 Pfam PF02811 PHP domain 21 198 1.5E-30 T 12-10-2018 IPR004013 PHP domain GO:0003824 AMJ96_CH01658 b6666d41173db849d315f3a404c27ff3 1165 Gene3D G3DSA:1.10.150.870 807 901 2.0E-6 T 12-10-2018 AMJ96_CH01658 b6666d41173db849d315f3a404c27ff3 1165 SUPERFAMILY SSF160975 849 897 3.14E-6 T 12-10-2018 AMJ96_CH01658 b6666d41173db849d315f3a404c27ff3 1165 Gene3D G3DSA:3.20.20.140 2 292 4.2E-74 T 12-10-2018 AMJ96_CH01658 b6666d41173db849d315f3a404c27ff3 1165 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 321 752 9.5E-175 T 12-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH01658 b6666d41173db849d315f3a404c27ff3 1165 Pfam PF14579 Helix-hairpin-helix motif 825 913 2.8E-24 T 12-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 SUPERFAMILY SSF54980 412 506 8.15E-25 T 12-10-2018 IPR035647 EF-G domain III/V-like AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 Pfam PF00009 Elongation factor Tu GTP binding domain 14 192 3.9E-53 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 17 183 3.3E-19 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 Gene3D G3DSA:3.30.70.870 299 380 6.0E-36 T 12-10-2018 AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 Hamap MF_00071 Elongation factor 4 [lepA]. 1 610 305.235 T 12-10-2018 IPR006297 Elongation factor 4 GO:0005525 AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 Gene3D G3DSA:2.40.30.10 200 298 9.2E-34 T 12-10-2018 AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 53 68 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 Pfam PF03144 Elongation factor Tu domain 2 218 288 1.2E-11 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 PRINTS PR00315 GTP-binding elongation factor signature 101 112 5.2E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 PRINTS PR00315 GTP-binding elongation factor signature 137 146 5.2E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 PRINTS PR00315 GTP-binding elongation factor signature 85 95 5.2E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 PRINTS PR00315 GTP-binding elongation factor signature 17 30 5.2E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 PRINTS PR00315 GTP-binding elongation factor signature 60 68 5.2E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 Gene3D G3DSA:3.30.70.2570 492 566 5.4E-35 T 12-10-2018 IPR038363 LepA, C-terminal domain superfamily AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 Pfam PF00679 Elongation factor G C-terminus 412 497 5.5E-21 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 SUPERFAMILY SSF54980 304 383 1.51E-18 T 12-10-2018 IPR035647 EF-G domain III/V-like AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 SUPERFAMILY SSF52540 7 244 1.13E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 Gene3D G3DSA:3.30.70.3380 381 491 3.1E-41 T 12-10-2018 AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 Gene3D G3DSA:3.40.50.300 12 196 5.2E-72 T 12-10-2018 AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 SMART SM00838 411 498 0.0037 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 TIGRFAM TIGR01393 lepA: elongation factor 4 14 607 6.3E-293 T 12-10-2018 IPR006297 Elongation factor 4 GO:0005525 AMJ96_CH00258 2bcd6b8174072567cedebd4e01e278ff 610 Pfam PF06421 GTP-binding protein LepA C-terminus 500 606 2.0E-50 T 12-10-2018 IPR013842 GTP-binding protein LepA, C-terminal AMJ96_CH02597 d177e659cc88eb3d68bd8c9c0839054d 354 Pfam PF00072 Response regulator receiver domain 14 117 1.3E-17 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02597 d177e659cc88eb3d68bd8c9c0839054d 354 SMART SM00448 12 125 5.1E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02597 d177e659cc88eb3d68bd8c9c0839054d 354 Gene3D G3DSA:3.40.50.2300 12 163 6.5E-26 T 12-10-2018 AMJ96_CH02597 d177e659cc88eb3d68bd8c9c0839054d 354 Gene3D G3DSA:3.30.565.10 216 354 4.7E-23 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02597 d177e659cc88eb3d68bd8c9c0839054d 354 SMART SM00387 255 352 3.9E-6 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH02597 d177e659cc88eb3d68bd8c9c0839054d 354 Pfam PF13581 Histidine kinase-like ATPase domain 249 315 2.8E-11 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH02597 d177e659cc88eb3d68bd8c9c0839054d 354 SUPERFAMILY SSF55874 220 343 6.81E-16 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02597 d177e659cc88eb3d68bd8c9c0839054d 354 SUPERFAMILY SSF52172 13 163 3.27E-28 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH02597 d177e659cc88eb3d68bd8c9c0839054d 354 Pfam PF07568 Histidine kinase 159 233 5.1E-20 T 12-10-2018 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain AMJ96_CH01265 42807dadc37ece5bf6f091435ddc6427 500 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 16 469 9.3E-123 T 12-10-2018 IPR003846 Uncharacterised protein family UPF0061 AMJ96_CH01265 42807dadc37ece5bf6f091435ddc6427 500 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 12 486 46.704 T 12-10-2018 IPR003846 Uncharacterised protein family UPF0061 AMJ96_CH03457 9c65cfc3e9feebbe0a31ef007bc10552 347 SUPERFAMILY SSF55347 128 326 3.05E-32 T 12-10-2018 AMJ96_CH03457 9c65cfc3e9feebbe0a31ef007bc10552 347 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 132 260 1.9E-7 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AMJ96_CH03457 9c65cfc3e9feebbe0a31ef007bc10552 347 Gene3D G3DSA:3.30.360.10 132 347 7.1E-40 T 12-10-2018 AMJ96_CH03457 9c65cfc3e9feebbe0a31ef007bc10552 347 Gene3D G3DSA:3.40.50.720 1 131 8.3E-34 T 12-10-2018 AMJ96_CH03457 9c65cfc3e9feebbe0a31ef007bc10552 347 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 1 119 2.8E-20 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_CH03457 9c65cfc3e9feebbe0a31ef007bc10552 347 SUPERFAMILY SSF51735 2 152 5.3E-43 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00348 514e2008e6e23a3092901f7acfe4ea5a 364 SUPERFAMILY SSF47413 10 68 3.19E-13 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PD00348 514e2008e6e23a3092901f7acfe4ea5a 364 Gene3D G3DSA:1.10.260.40 3 67 1.8E-17 T 12-10-2018 AMJ96_PD00348 514e2008e6e23a3092901f7acfe4ea5a 364 Pfam PF00356 Bacterial regulatory proteins, lacI family 12 57 1.1E-11 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00348 514e2008e6e23a3092901f7acfe4ea5a 364 Gene3D G3DSA:3.40.50.2300 170 348 1.7E-67 T 12-10-2018 AMJ96_PD00348 514e2008e6e23a3092901f7acfe4ea5a 364 Gene3D G3DSA:3.40.50.2300 71 343 1.7E-67 T 12-10-2018 AMJ96_PD00348 514e2008e6e23a3092901f7acfe4ea5a 364 SMART SM00354 10 80 6.2E-24 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00348 514e2008e6e23a3092901f7acfe4ea5a 364 Pfam PF13377 Periplasmic binding protein-like domain 179 351 7.4E-26 T 12-10-2018 AMJ96_PD00348 514e2008e6e23a3092901f7acfe4ea5a 364 SUPERFAMILY SSF53822 70 352 2.17E-59 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PD00348 514e2008e6e23a3092901f7acfe4ea5a 364 ProSitePatterns PS00356 LacI-type HTH domain signature. 13 31 - T 12-10-2018 AMJ96_PD00319 af64c94f1c6b54ac9ba85f0d26f1f148 221 Pfam PF00881 Nitroreductase family 8 197 5.3E-30 T 12-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AMJ96_PD00319 af64c94f1c6b54ac9ba85f0d26f1f148 221 Gene3D G3DSA:3.40.109.10 1 216 1.4E-55 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMJ96_PD00319 af64c94f1c6b54ac9ba85f0d26f1f148 221 SUPERFAMILY SSF55469 1 218 1.96E-43 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMJ96_PA00048 b2b70757f4bef47c06027f59cf5e6dcf 325 Pfam PF08402 TOBE domain 256 316 7.3E-10 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_PA00048 b2b70757f4bef47c06027f59cf5e6dcf 325 SUPERFAMILY SSF52540 4 241 2.87E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00048 b2b70757f4bef47c06027f59cf5e6dcf 325 Pfam PF00005 ABC transporter 20 161 3.3E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00048 b2b70757f4bef47c06027f59cf5e6dcf 325 Gene3D G3DSA:3.40.50.300 4 221 9.6E-67 T 12-10-2018 AMJ96_PA00048 b2b70757f4bef47c06027f59cf5e6dcf 325 SUPERFAMILY SSF50331 236 325 1.94E-14 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_PA00048 b2b70757f4bef47c06027f59cf5e6dcf 325 SMART SM00382 28 211 3.7E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00048 b2b70757f4bef47c06027f59cf5e6dcf 325 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PA00048 b2b70757f4bef47c06027f59cf5e6dcf 325 Gene3D G3DSA:2.40.50.140 262 314 1.8E-7 T 12-10-2018 AMJ96_PA00048 b2b70757f4bef47c06027f59cf5e6dcf 325 Gene3D G3DSA:2.40.50.940 222 249 1.1E-9 T 12-10-2018 AMJ96_CH00096 0a3eb41d87fea46fe1eba9984b945312 269 Gene3D G3DSA:1.10.260.40 86 153 1.3E-10 T 12-10-2018 AMJ96_CH00096 0a3eb41d87fea46fe1eba9984b945312 269 Pfam PF13411 MerR HTH family regulatory protein 9 77 1.5E-17 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH00096 0a3eb41d87fea46fe1eba9984b945312 269 SUPERFAMILY SSF47413 93 159 9.29E-11 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH00096 0a3eb41d87fea46fe1eba9984b945312 269 Gene3D G3DSA:2.60.120.10 154 268 1.1E-20 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH00096 0a3eb41d87fea46fe1eba9984b945312 269 ProSitePatterns PS00552 MerR-type HTH domain signature. 12 34 - T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH00096 0a3eb41d87fea46fe1eba9984b945312 269 SUPERFAMILY SSF46955 9 77 2.33E-17 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily AMJ96_CH00096 0a3eb41d87fea46fe1eba9984b945312 269 SMART SM00422 9 78 1.1E-14 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH00096 0a3eb41d87fea46fe1eba9984b945312 269 Gene3D G3DSA:1.10.1660.10 7 81 1.6E-18 T 12-10-2018 AMJ96_CH00096 0a3eb41d87fea46fe1eba9984b945312 269 SMART SM00530 96 151 2.8E-6 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH00096 0a3eb41d87fea46fe1eba9984b945312 269 SUPERFAMILY SSF51182 148 269 3.66E-27 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH00096 0a3eb41d87fea46fe1eba9984b945312 269 Pfam PF07883 Cupin domain 194 263 4.6E-17 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_CH00096 0a3eb41d87fea46fe1eba9984b945312 269 Pfam PF13560 Helix-turn-helix domain 93 149 4.6E-10 T 12-10-2018 AMJ96_CH01199 6facb257718355bc483ce30df1fc2466 449 Gene3D G3DSA:2.160.20.10 33 421 1.2E-40 T 12-10-2018 IPR012334 Pectin lyase fold AMJ96_CH01199 6facb257718355bc483ce30df1fc2466 449 SMART SM00710 212 243 1900.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01199 6facb257718355bc483ce30df1fc2466 449 SMART SM00710 185 207 22.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01199 6facb257718355bc483ce30df1fc2466 449 SMART SM00710 291 312 1700.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01199 6facb257718355bc483ce30df1fc2466 449 SMART SM00710 244 266 400.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01199 6facb257718355bc483ce30df1fc2466 449 SMART SM00710 162 184 1500.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01199 6facb257718355bc483ce30df1fc2466 449 SMART SM00710 375 396 5800.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01199 6facb257718355bc483ce30df1fc2466 449 SMART SM00710 322 348 4300.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01199 6facb257718355bc483ce30df1fc2466 449 SMART SM00710 267 289 1000.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01199 6facb257718355bc483ce30df1fc2466 449 TIGRFAM TIGR03807 RR_fam_repeat: putative cofactor-binding repeat 370 389 1.2E-4 T 12-10-2018 IPR022444 Cofactor-binding repeat, putative AMJ96_CH01199 6facb257718355bc483ce30df1fc2466 449 TIGRFAM TIGR03807 RR_fam_repeat: putative cofactor-binding repeat 309 330 1.8E-5 T 12-10-2018 IPR022444 Cofactor-binding repeat, putative AMJ96_CH01199 6facb257718355bc483ce30df1fc2466 449 TIGRFAM TIGR03808 RR_plus_rpt_1: twin-arg-translocated uncharacterized repeat protein 6 448 1.7E-117 T 12-10-2018 IPR022388 Conserved hypothetical protein CHP03808 AMJ96_CH01199 6facb257718355bc483ce30df1fc2466 449 SUPERFAMILY SSF51126 22 415 5.62E-41 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor AMJ96_CH01199 6facb257718355bc483ce30df1fc2466 449 Pfam PF05048 Periplasmic copper-binding protein (NosD) 225 435 4.5E-8 T 12-10-2018 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 AMJ96_CH01199 6facb257718355bc483ce30df1fc2466 449 Pfam PF13229 Right handed beta helix region 105 221 5.1E-9 T 12-10-2018 IPR039448 Right handed beta helix domain AMJ96_PD00044 c52226735c733e4a1643a7ed136d2c72 444 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 270 435 2.3E-32 T 12-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain AMJ96_PD00044 c52226735c733e4a1643a7ed136d2c72 444 SUPERFAMILY SSF142764 8 440 6.02E-94 T 12-10-2018 AMJ96_PD00044 c52226735c733e4a1643a7ed136d2c72 444 Pfam PF07005 Putative sugar-binding N-terminal domain 7 243 4.4E-51 T 12-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain AMJ96_PD00044 c52226735c733e4a1643a7ed136d2c72 444 Gene3D G3DSA:3.40.50.10840 4 255 4.0E-70 T 12-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily AMJ96_PD00044 c52226735c733e4a1643a7ed136d2c72 444 Gene3D G3DSA:3.40.980.20 261 441 2.3E-39 T 12-10-2018 AMJ96_CH02904 57e33d10cd8b8ef01fe88ccf0a40c899 367 Pfam PF01658 Myo-inositol-1-phosphate synthase 193 301 1.6E-31 T 12-10-2018 IPR013021 Myo-inositol-1-phosphate synthase, GAPDH-like KEGG: 00521+5.5.1.4|KEGG: 00562+5.5.1.4|MetaCyc: PWY-2301|MetaCyc: PWY-4661|MetaCyc: PWY-6372|MetaCyc: PWY-6580|MetaCyc: PWY-6664|Reactome: R-HSA-1855183 AMJ96_CH02904 57e33d10cd8b8ef01fe88ccf0a40c899 367 Gene3D G3DSA:3.40.50.720 6 354 5.4E-132 T 12-10-2018 AMJ96_CH02904 57e33d10cd8b8ef01fe88ccf0a40c899 367 SUPERFAMILY SSF55347 192 300 1.7E-35 T 12-10-2018 AMJ96_CH02904 57e33d10cd8b8ef01fe88ccf0a40c899 367 SUPERFAMILY SSF51735 5 355 6.19E-90 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02904 57e33d10cd8b8ef01fe88ccf0a40c899 367 Gene3D G3DSA:3.30.360.10 192 301 5.4E-132 T 12-10-2018 AMJ96_CH02904 57e33d10cd8b8ef01fe88ccf0a40c899 367 PIRSF PIRSF015578 1 365 1.1E-88 T 12-10-2018 IPR002587 Myo-inositol-1-phosphate synthase GO:0004512|GO:0006021|GO:0008654 KEGG: 00521+5.5.1.4|KEGG: 00562+5.5.1.4|MetaCyc: PWY-2301|MetaCyc: PWY-4661|MetaCyc: PWY-6372|MetaCyc: PWY-6580|MetaCyc: PWY-6664|Reactome: R-HSA-1855183 AMJ96_PD00520 a1db0fc6a7b70001a203d372258e76b6 334 SUPERFAMILY SSF46689 231 281 3.4E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00520 a1db0fc6a7b70001a203d372258e76b6 334 SUPERFAMILY SSF46689 283 333 1.57E-5 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00520 a1db0fc6a7b70001a203d372258e76b6 334 Pfam PF12833 Helix-turn-helix domain 254 334 7.1E-25 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PD00520 a1db0fc6a7b70001a203d372258e76b6 334 Pfam PF14525 AraC-binding-like domain 34 210 3.2E-26 T 12-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like AMJ96_PD00520 a1db0fc6a7b70001a203d372258e76b6 334 Gene3D G3DSA:1.10.10.60 231 334 1.2E-34 T 12-10-2018 AMJ96_PD00520 a1db0fc6a7b70001a203d372258e76b6 334 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 284 328 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_PD00520 a1db0fc6a7b70001a203d372258e76b6 334 SMART SM00342 247 332 8.4E-26 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH01627 d208bb1cb2f3d8a3be4eef609e583eaa 133 Pfam PF07883 Cupin domain 42 103 4.7E-10 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_CH01627 d208bb1cb2f3d8a3be4eef609e583eaa 133 Gene3D G3DSA:2.60.120.10 1 131 1.0E-50 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH01627 d208bb1cb2f3d8a3be4eef609e583eaa 133 SUPERFAMILY SSF51182 8 130 2.8E-32 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_PB00048 9a736ee2722843c038b94a1b9efcf2ab 350 Gene3D G3DSA:3.40.47.10 209 347 2.0E-36 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_PB00048 9a736ee2722843c038b94a1b9efcf2ab 350 PIRSF PIRSF000451 1 350 2.8E-121 T 12-10-2018 IPR011141 Polyketide synthase, type III GO:0009058|GO:0016747 AMJ96_PB00048 9a736ee2722843c038b94a1b9efcf2ab 350 SUPERFAMILY SSF53901 2 347 3.28E-53 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_PB00048 9a736ee2722843c038b94a1b9efcf2ab 350 Pfam PF00195 Chalcone and stilbene synthases, N-terminal domain 6 203 1.5E-25 T 12-10-2018 IPR001099 Chalcone/stilbene synthase, N-terminal AMJ96_PB00048 9a736ee2722843c038b94a1b9efcf2ab 350 Gene3D G3DSA:3.40.47.10 5 208 8.0E-61 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_PB00048 9a736ee2722843c038b94a1b9efcf2ab 350 Pfam PF02797 Chalcone and stilbene synthases, C-terminal domain 211 344 2.1E-15 T 12-10-2018 IPR012328 Chalcone/stilbene synthase, C-terminal AMJ96_PA00089 6c786fd1ce2623d5bd8ac1e5fef632ae 337 SMART SM00861 4 179 1.2E-70 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMJ96_PA00089 6c786fd1ce2623d5bd8ac1e5fef632ae 337 SUPERFAMILY SSF52922 205 335 4.84E-45 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMJ96_PA00089 6c786fd1ce2623d5bd8ac1e5fef632ae 337 Gene3D G3DSA:3.40.50.970 1 203 1.1E-94 T 12-10-2018 AMJ96_PA00089 6c786fd1ce2623d5bd8ac1e5fef632ae 337 Gene3D G3DSA:3.40.50.920 204 337 8.2E-58 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMJ96_PA00089 6c786fd1ce2623d5bd8ac1e5fef632ae 337 Pfam PF02779 Transketolase, pyrimidine binding domain 4 178 2.7E-46 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMJ96_PA00089 6c786fd1ce2623d5bd8ac1e5fef632ae 337 Pfam PF02780 Transketolase, C-terminal domain 210 324 4.3E-38 T 12-10-2018 IPR033248 Transketolase, C-terminal domain AMJ96_PA00089 6c786fd1ce2623d5bd8ac1e5fef632ae 337 SUPERFAMILY SSF52518 1 219 1.03E-73 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_PA00067 e6638e7f2fcbd22594f8fde6aac874a6 338 Gene3D G3DSA:3.40.50.720 15 319 1.4E-76 T 12-10-2018 AMJ96_PA00067 e6638e7f2fcbd22594f8fde6aac874a6 338 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 121 298 1.7E-47 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMJ96_PA00067 e6638e7f2fcbd22594f8fde6aac874a6 338 Gene3D G3DSA:3.40.50.720 109 297 1.4E-76 T 12-10-2018 AMJ96_PA00067 e6638e7f2fcbd22594f8fde6aac874a6 338 SUPERFAMILY SSF51735 113 299 2.42E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PA00067 e6638e7f2fcbd22594f8fde6aac874a6 338 SUPERFAMILY SSF52283 21 140 1.08E-5 T 12-10-2018 AMJ96_CH00035 89b0741c46fc01fb4956fcb73b583f28 592 Gene3D G3DSA:3.30.565.10 425 591 5.7E-33 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00035 89b0741c46fc01fb4956fcb73b583f28 592 PRINTS PR00344 Bacterial sensor protein C-terminal signature 544 562 4.6E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00035 89b0741c46fc01fb4956fcb73b583f28 592 PRINTS PR00344 Bacterial sensor protein C-terminal signature 574 587 4.6E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00035 89b0741c46fc01fb4956fcb73b583f28 592 PRINTS PR00344 Bacterial sensor protein C-terminal signature 527 537 4.6E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00035 89b0741c46fc01fb4956fcb73b583f28 592 PRINTS PR00344 Bacterial sensor protein C-terminal signature 509 523 4.6E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00035 89b0741c46fc01fb4956fcb73b583f28 592 Pfam PF13756 Stimulus-sensing domain 129 238 1.9E-36 T 12-10-2018 IPR025919 Stimulus-sensing domain AMJ96_CH00035 89b0741c46fc01fb4956fcb73b583f28 592 SUPERFAMILY SSF55874 409 588 9.82E-33 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00035 89b0741c46fc01fb4956fcb73b583f28 592 Pfam PF00512 His Kinase A (phospho-acceptor) domain 357 418 3.0E-15 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH00035 89b0741c46fc01fb4956fcb73b583f28 592 Gene3D G3DSA:1.20.1480.50 261 356 2.0E-9 T 12-10-2018 AMJ96_CH00035 89b0741c46fc01fb4956fcb73b583f28 592 SMART SM00387 471 590 1.2E-30 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00035 89b0741c46fc01fb4956fcb73b583f28 592 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 474 589 5.3E-19 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00035 89b0741c46fc01fb4956fcb73b583f28 592 Pfam PF00672 HAMP domain 299 349 2.7E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH00035 89b0741c46fc01fb4956fcb73b583f28 592 Pfam PF13755 Sensor N-terminal transmembrane domain 30 94 1.7E-30 T 12-10-2018 IPR025908 Sensor N-terminal transmembrane domain AMJ96_CH00035 89b0741c46fc01fb4956fcb73b583f28 592 Gene3D G3DSA:1.10.287.130 357 419 7.0E-14 T 12-10-2018 AMJ96_CH00035 89b0741c46fc01fb4956fcb73b583f28 592 SMART SM00304 298 353 4.6E-4 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH00035 89b0741c46fc01fb4956fcb73b583f28 592 SUPERFAMILY SSF47384 337 418 6.28E-17 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH00035 89b0741c46fc01fb4956fcb73b583f28 592 SMART SM00388 354 419 6.4E-17 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH02266 0b3cb5a2592bb5cfa47118d203b56ba7 203 SUPERFAMILY SSF141371 118 200 1.41E-7 T 12-10-2018 AMJ96_CH02266 0b3cb5a2592bb5cfa47118d203b56ba7 203 Gene3D G3DSA:2.40.10.220 118 203 8.5E-6 T 12-10-2018 AMJ96_CH02266 0b3cb5a2592bb5cfa47118d203b56ba7 203 Pfam PF07238 PilZ domain 120 203 7.5E-7 T 12-10-2018 IPR009875 PilZ domain GO:0035438 AMJ96_CH02264 209ab6ce97b9af5f0d2fe359628e1d00 262 SUPERFAMILY SSF144091 27 248 1.44E-32 T 12-10-2018 AMJ96_CH02264 209ab6ce97b9af5f0d2fe359628e1d00 262 Pfam PF01694 Rhomboid family 84 245 2.5E-29 T 12-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AMJ96_CH02264 209ab6ce97b9af5f0d2fe359628e1d00 262 Gene3D G3DSA:1.20.1540.10 30 247 2.0E-25 T 12-10-2018 IPR035952 Rhomboid-like superfamily AMJ96_CH01985 804e7ec4f16e7b50f6e08b2057431b8a 247 SUPERFAMILY SSF64005 9 231 5.75E-85 T 12-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 AMJ96_CH01985 804e7ec4f16e7b50f6e08b2057431b8a 247 Pfam PF01255 Putative undecaprenyl diphosphate synthase 16 236 1.9E-78 T 12-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AMJ96_CH01985 804e7ec4f16e7b50f6e08b2057431b8a 247 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 9 237 39.747 T 12-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AMJ96_CH01985 804e7ec4f16e7b50f6e08b2057431b8a 247 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 9 236 3.9E-83 T 12-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AMJ96_CH01985 804e7ec4f16e7b50f6e08b2057431b8a 247 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 182 199 - T 12-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 AMJ96_CH01985 804e7ec4f16e7b50f6e08b2057431b8a 247 Gene3D G3DSA:3.40.1180.10 3 238 1.4E-93 T 12-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 AMJ96_CH02558 1b6686fdb0740d5ea05d492815e647a9 351 SUPERFAMILY SSF52540 4 206 3.18E-32 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02558 1b6686fdb0740d5ea05d492815e647a9 351 TIGRFAM TIGR02475 CobW: cobalamin biosynthesis protein CobW 4 344 3.0E-172 T 12-10-2018 IPR012824 Cobalamin (vitamin B12) biosynthesis CobW GO:0009236 AMJ96_CH02558 1b6686fdb0740d5ea05d492815e647a9 351 SMART SM00833 256 349 1.7E-4 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AMJ96_CH02558 1b6686fdb0740d5ea05d492815e647a9 351 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 7 204 8.2E-58 T 12-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH02558 1b6686fdb0740d5ea05d492815e647a9 351 Gene3D G3DSA:3.40.50.300 3 228 2.5E-58 T 12-10-2018 AMJ96_CH02558 1b6686fdb0740d5ea05d492815e647a9 351 Gene3D G3DSA:3.30.1220.10 231 350 1.7E-15 T 12-10-2018 IPR036627 CobW-like, C-terminal domain superfamily AMJ96_CH02558 1b6686fdb0740d5ea05d492815e647a9 351 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 256 348 2.8E-16 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AMJ96_CH02558 1b6686fdb0740d5ea05d492815e647a9 351 SUPERFAMILY SSF90002 256 348 1.22E-18 T 12-10-2018 AMJ96_PA00050 4449380c186c5b7186e39414c062ac73 292 SUPERFAMILY SSF161098 54 278 6.8E-58 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00050 4449380c186c5b7186e39414c062ac73 292 Gene3D G3DSA:1.10.3720.10 50 290 6.0E-66 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00050 4449380c186c5b7186e39414c062ac73 292 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 282 3.7E-16 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00008 8ea82c2d48c723b451a4b3afd940e255 234 SUPERFAMILY SSF54427 18 230 1.45E-52 T 12-10-2018 IPR032710 NTF2-like domain superfamily AMJ96_CH00008 8ea82c2d48c723b451a4b3afd940e255 234 Pfam PF04280 Tim44-like domain 86 230 1.7E-50 T 12-10-2018 IPR007379 Tim44-like domain AMJ96_CH00008 8ea82c2d48c723b451a4b3afd940e255 234 SMART SM00978 85 231 2.8E-58 T 12-10-2018 IPR007379 Tim44-like domain AMJ96_CH00008 8ea82c2d48c723b451a4b3afd940e255 234 Gene3D G3DSA:3.10.450.240 69 234 1.9E-39 T 12-10-2018 AMJ96_CH00008 8ea82c2d48c723b451a4b3afd940e255 234 PIRSF PIRSF031890 2 233 7.1E-88 T 12-10-2018 IPR016985 Uncharacterised conserved protein UCP031890, Tim44-related AMJ96_CH00949 ded0e3be17dbf990a20aded07b7333da 187 Pfam PF02632 BioY family 29 176 1.0E-36 T 12-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 AMJ96_CH00949 ded0e3be17dbf990a20aded07b7333da 187 Gene3D G3DSA:1.10.1760.20 1 179 1.3E-53 T 12-10-2018 AMJ96_CH00949 ded0e3be17dbf990a20aded07b7333da 187 PIRSF PIRSF016661 1 182 1.4E-42 T 12-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 AMJ96_CH00957 c916f27d4784d196deb9e51b30c71b78 64 SUPERFAMILY SSF54786 6 61 2.71E-10 T 12-10-2018 AMJ96_CH00957 c916f27d4784d196deb9e51b30c71b78 64 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 6 60 5.5E-8 T 12-10-2018 IPR012933 HicA mRNA interferase family GO:0003729 AMJ96_CH00957 c916f27d4784d196deb9e51b30c71b78 64 Gene3D G3DSA:3.30.920.30 5 61 5.2E-8 T 12-10-2018 IPR038570 HicA superfamily AMJ96_CH03233 61c743fd4346747f727dcb5ca59ea328 140 Gene3D G3DSA:2.40.170.20 3 140 2.3E-26 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMJ96_CH03233 61c743fd4346747f727dcb5ca59ea328 140 Pfam PF00593 TonB dependent receptor 11 137 6.5E-12 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMJ96_CH03233 61c743fd4346747f727dcb5ca59ea328 140 SUPERFAMILY SSF56935 7 140 7.69E-19 T 12-10-2018 AMJ96_CH01836 3ceb8bcebb96380cdbb13506899ec114 424 Gene3D G3DSA:3.40.190.10 26 400 1.9E-131 T 12-10-2018 AMJ96_CH01836 3ceb8bcebb96380cdbb13506899ec114 424 Pfam PF13379 NMT1-like family 22 282 1.7E-72 T 12-10-2018 AMJ96_CH01836 3ceb8bcebb96380cdbb13506899ec114 424 Gene3D G3DSA:3.40.190.10 111 235 1.9E-131 T 12-10-2018 AMJ96_CH01836 3ceb8bcebb96380cdbb13506899ec114 424 SUPERFAMILY SSF53850 22 271 7.5E-21 T 12-10-2018 AMJ96_CH01508 db6ef7c5464748e8f10a4adba981e97f 149 Gene3D G3DSA:3.40.50.10110 1 138 4.2E-22 T 12-10-2018 IPR036768 DNA polymerase III subunit chi superfamily AMJ96_CH01508 db6ef7c5464748e8f10a4adba981e97f 149 SUPERFAMILY SSF102400 1 139 1.22E-43 T 12-10-2018 IPR036768 DNA polymerase III subunit chi superfamily AMJ96_CH01508 db6ef7c5464748e8f10a4adba981e97f 149 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 135 2.1E-36 T 12-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 AMJ96_CH03713 c4b320e0461d61d18a51066c872a1504 248 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 238 34.292 T 12-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH03713 c4b320e0461d61d18a51066c872a1504 248 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 237 4.3E-94 T 12-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH03713 c4b320e0461d61d18a51066c872a1504 248 Pfam PF01709 Transcriptional regulator 5 236 3.1E-94 T 12-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH03713 c4b320e0461d61d18a51066c872a1504 248 SUPERFAMILY SSF75625 3 245 2.62E-93 T 12-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH03713 c4b320e0461d61d18a51066c872a1504 248 Gene3D G3DSA:1.10.10.200 1 80 1.1E-32 T 12-10-2018 IPR017856 Integrase-like, N-terminal AMJ96_CH03713 c4b320e0461d61d18a51066c872a1504 248 Gene3D G3DSA:3.30.70.980 132 204 3.5E-53 T 12-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH03713 c4b320e0461d61d18a51066c872a1504 248 Gene3D G3DSA:3.30.70.980 83 235 3.5E-53 T 12-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00259 7ca706e9509add8abf090824b10384cb 336 Gene3D G3DSA:3.30.360.10 122 310 1.1E-117 T 12-10-2018 AMJ96_PD00259 7ca706e9509add8abf090824b10384cb 336 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 53 120 7.7E-10 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_PD00259 7ca706e9509add8abf090824b10384cb 336 SUPERFAMILY SSF55347 132 303 1.24E-20 T 12-10-2018 AMJ96_PD00259 7ca706e9509add8abf090824b10384cb 336 SUPERFAMILY SSF51735 2 147 1.38E-22 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00259 7ca706e9509add8abf090824b10384cb 336 Gene3D G3DSA:3.40.50.720 3 309 1.1E-117 T 12-10-2018 AMJ96_PD00500 8b873aae93d7985c1fe0e44817f777ca 764 SUPERFAMILY SSF53706 47 631 1.57E-138 T 12-10-2018 AMJ96_PD00500 8b873aae93d7985c1fe0e44817f777ca 764 SUPERFAMILY SSF50692 637 762 2.94E-15 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMJ96_PD00500 8b873aae93d7985c1fe0e44817f777ca 764 Gene3D G3DSA:3.40.228.10 182 446 2.6E-67 T 12-10-2018 AMJ96_PD00500 8b873aae93d7985c1fe0e44817f777ca 764 PIRSF PIRSF000144 1 764 0.0 T 12-10-2018 AMJ96_PD00500 8b873aae93d7985c1fe0e44817f777ca 764 Pfam PF01568 Molydopterin dinucleotide binding domain 647 752 2.3E-8 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AMJ96_PD00500 8b873aae93d7985c1fe0e44817f777ca 764 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 13 759 2.2E-287 T 12-10-2018 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 AMJ96_PD00500 8b873aae93d7985c1fe0e44817f777ca 764 Pfam PF00384 Molybdopterin oxidoreductase 109 486 4.3E-21 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_PA00096 d953b36d1f0496b50b6952e90b22aca5 445 Gene3D G3DSA:3.90.226.10 15 254 1.2E-58 T 12-10-2018 AMJ96_PA00096 d953b36d1f0496b50b6952e90b22aca5 445 SUPERFAMILY SSF52096 17 201 1.07E-21 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_PA00096 d953b36d1f0496b50b6952e90b22aca5 445 Pfam PF01957 NfeD-like C-terminal, partner-binding 305 439 8.9E-36 T 12-10-2018 IPR002810 NfeD-like, C-terminal domain AMJ96_PA00096 d953b36d1f0496b50b6952e90b22aca5 445 SUPERFAMILY SSF141322 380 439 7.59E-12 T 12-10-2018 AMJ96_PA00096 d953b36d1f0496b50b6952e90b22aca5 445 Gene3D G3DSA:2.40.50.140 378 444 5.4E-14 T 12-10-2018 AMJ96_PC00157 4679389d3fd071f258722e1c217a2e2c 160 Gene3D G3DSA:3.40.630.30 1 157 1.8E-40 T 12-10-2018 AMJ96_PC00157 4679389d3fd071f258722e1c217a2e2c 160 Pfam PF13508 Acetyltransferase (GNAT) domain 41 142 6.5E-8 T 12-10-2018 IPR000182 GNAT domain AMJ96_PC00157 4679389d3fd071f258722e1c217a2e2c 160 SUPERFAMILY SSF55729 16 143 7.75E-15 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_PC00045 ad31e37987889404f194d8558512d985 445 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 21 430 1.1E-126 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AMJ96_PC00045 ad31e37987889404f194d8558512d985 445 SMART SM00984 334 434 5.8E-32 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMJ96_PC00045 ad31e37987889404f194d8558512d985 445 Gene3D G3DSA:3.40.50.720 5 211 1.4E-62 T 12-10-2018 AMJ96_PC00045 ad31e37987889404f194d8558512d985 445 SUPERFAMILY SSF48179 216 312 8.33E-29 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_PC00045 ad31e37987889404f194d8558512d985 445 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 20 194 5.0E-42 T 12-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMJ96_PC00045 ad31e37987889404f194d8558512d985 445 PIRSF PIRSF500136 8 444 6.4E-141 T 12-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 AMJ96_PC00045 ad31e37987889404f194d8558512d985 445 PIRSF PIRSF000124 19 443 6.7E-61 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AMJ96_PC00045 ad31e37987889404f194d8558512d985 445 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 334 434 1.3E-22 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMJ96_PC00045 ad31e37987889404f194d8558512d985 445 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 216 306 8.7E-29 T 12-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AMJ96_PC00045 ad31e37987889404f194d8558512d985 445 SUPERFAMILY SSF52413 323 434 4.45E-26 T 12-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 AMJ96_PC00045 ad31e37987889404f194d8558512d985 445 Gene3D G3DSA:3.40.50.720 214 443 2.9E-63 T 12-10-2018 AMJ96_PC00045 ad31e37987889404f194d8558512d985 445 SUPERFAMILY SSF51735 20 209 4.3E-43 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00365 742f748fc69921d801a93f9d9db213eb 306 SMART SM00342 222 305 7.1E-25 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PC00365 742f748fc69921d801a93f9d9db213eb 306 SUPERFAMILY SSF46689 258 303 7.62E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PC00365 742f748fc69921d801a93f9d9db213eb 306 Pfam PF12833 Helix-turn-helix domain 228 302 9.9E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PC00365 742f748fc69921d801a93f9d9db213eb 306 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 259 301 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_PC00365 742f748fc69921d801a93f9d9db213eb 306 Pfam PF12852 Cupin 12 190 2.7E-36 T 12-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain AMJ96_PC00365 742f748fc69921d801a93f9d9db213eb 306 SUPERFAMILY SSF46689 205 255 7.26E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PC00365 742f748fc69921d801a93f9d9db213eb 306 Gene3D G3DSA:1.10.10.60 202 306 6.7E-24 T 12-10-2018 AMJ96_CH02502 917a0ac15b9087e4f45351d3421b50a3 298 Gene3D G3DSA:3.40.190.10 165 267 1.2E-51 T 12-10-2018 AMJ96_CH02502 917a0ac15b9087e4f45351d3421b50a3 298 SUPERFAMILY SSF53850 89 296 5.43E-37 T 12-10-2018 AMJ96_CH02502 917a0ac15b9087e4f45351d3421b50a3 298 Pfam PF03466 LysR substrate binding domain 88 294 2.5E-35 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH02502 917a0ac15b9087e4f45351d3421b50a3 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 2.4E-14 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02502 917a0ac15b9087e4f45351d3421b50a3 298 SUPERFAMILY SSF46785 3 86 7.82E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02502 917a0ac15b9087e4f45351d3421b50a3 298 Gene3D G3DSA:1.10.10.10 3 90 9.2E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02502 917a0ac15b9087e4f45351d3421b50a3 298 Gene3D G3DSA:3.40.190.10 91 293 1.2E-51 T 12-10-2018 AMJ96_CH00680 b4f142de4342eb3801d636cd0bcce3bf 302 SUPERFAMILY SSF53335 94 279 8.1E-51 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH00680 b4f142de4342eb3801d636cd0bcce3bf 302 Gene3D G3DSA:3.40.50.150 93 293 8.4E-59 T 12-10-2018 AMJ96_CH00680 b4f142de4342eb3801d636cd0bcce3bf 302 SUPERFAMILY SSF47757 20 93 1.7E-15 T 12-10-2018 AMJ96_CH00680 b4f142de4342eb3801d636cd0bcce3bf 302 Pfam PF03705 CheR methyltransferase, all-alpha domain 28 76 1.1E-11 T 12-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AMJ96_CH00680 b4f142de4342eb3801d636cd0bcce3bf 302 Pfam PF01739 CheR methyltransferase, SAM binding domain 94 291 4.0E-69 T 12-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal AMJ96_CH00680 b4f142de4342eb3801d636cd0bcce3bf 302 Gene3D G3DSA:1.10.155.10 17 92 6.8E-18 T 12-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily AMJ96_CH00680 b4f142de4342eb3801d636cd0bcce3bf 302 PRINTS PR00996 Glutamate methyltransferase family signature 127 147 1.8E-48 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_CH00680 b4f142de4342eb3801d636cd0bcce3bf 302 PRINTS PR00996 Glutamate methyltransferase family signature 48 61 1.8E-48 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_CH00680 b4f142de4342eb3801d636cd0bcce3bf 302 PRINTS PR00996 Glutamate methyltransferase family signature 252 275 1.8E-48 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_CH00680 b4f142de4342eb3801d636cd0bcce3bf 302 PRINTS PR00996 Glutamate methyltransferase family signature 87 99 1.8E-48 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_CH00680 b4f142de4342eb3801d636cd0bcce3bf 302 PRINTS PR00996 Glutamate methyltransferase family signature 233 247 1.8E-48 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_CH00680 b4f142de4342eb3801d636cd0bcce3bf 302 PRINTS PR00996 Glutamate methyltransferase family signature 162 178 1.8E-48 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_CH00680 b4f142de4342eb3801d636cd0bcce3bf 302 PIRSF PIRSF000410 11 295 5.2E-107 T 12-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR AMJ96_CH00680 b4f142de4342eb3801d636cd0bcce3bf 302 SMART SM00138 26 294 2.0E-134 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_CH02238 66df69ffe1de0da3bc174322d0bd7e8d 651 SUPERFAMILY SSF52540 75 350 2.04E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02238 66df69ffe1de0da3bc174322d0bd7e8d 651 SMART SM00490 258 339 1.1E-29 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH02238 66df69ffe1de0da3bc174322d0bd7e8d 651 Pfam PF03880 DbpA RNA binding domain 470 540 5.4E-16 T 12-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain AMJ96_CH02238 66df69ffe1de0da3bc174322d0bd7e8d 651 SMART SM00487 19 217 1.5E-50 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMJ96_CH02238 66df69ffe1de0da3bc174322d0bd7e8d 651 Gene3D G3DSA:3.40.50.300 218 430 3.6E-42 T 12-10-2018 AMJ96_CH02238 66df69ffe1de0da3bc174322d0bd7e8d 651 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 153 161 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AMJ96_CH02238 66df69ffe1de0da3bc174322d0bd7e8d 651 Pfam PF00271 Helicase conserved C-terminal domain 234 339 1.3E-26 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH02238 66df69ffe1de0da3bc174322d0bd7e8d 651 Pfam PF00270 DEAD/DEAH box helicase 24 195 1.2E-39 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMJ96_CH02238 66df69ffe1de0da3bc174322d0bd7e8d 651 Gene3D G3DSA:3.40.50.300 3 211 4.5E-64 T 12-10-2018 AMJ96_CH02238 66df69ffe1de0da3bc174322d0bd7e8d 651 Gene3D G3DSA:3.30.70.330 471 542 1.2E-6 T 12-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily AMJ96_CH02054 b55d7cc45d8dd39345ef1679b99f4c81 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 151 166 3.8E-21 T 12-10-2018 AMJ96_CH02054 b55d7cc45d8dd39345ef1679b99f4c81 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 275 290 3.8E-21 T 12-10-2018 AMJ96_CH02054 b55d7cc45d8dd39345ef1679b99f4c81 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 290 306 3.8E-21 T 12-10-2018 AMJ96_CH02054 b55d7cc45d8dd39345ef1679b99f4c81 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 3.8E-21 T 12-10-2018 AMJ96_CH02054 b55d7cc45d8dd39345ef1679b99f4c81 403 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 5 379 6.7E-95 T 12-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 AMJ96_CH02054 b55d7cc45d8dd39345ef1679b99f4c81 403 Pfam PF01494 FAD binding domain 5 310 1.4E-30 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 AMJ96_CH02054 b55d7cc45d8dd39345ef1679b99f4c81 403 Gene3D G3DSA:3.50.50.60 6 312 3.8E-79 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02054 b55d7cc45d8dd39345ef1679b99f4c81 403 Gene3D G3DSA:3.30.9.50 72 264 3.8E-79 T 12-10-2018 AMJ96_CH02054 b55d7cc45d8dd39345ef1679b99f4c81 403 SUPERFAMILY SSF51905 4 378 1.09E-49 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02196 ec2adb700a1a9e6b32ce0a2f163565e9 1081 Gene3D G3DSA:1.25.40.10 971 1070 7.9E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02196 ec2adb700a1a9e6b32ce0a2f163565e9 1081 SUPERFAMILY SSF48452 697 856 1.38E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02196 ec2adb700a1a9e6b32ce0a2f163565e9 1081 Gene3D G3DSA:1.25.40.10 864 964 2.2E-10 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02196 ec2adb700a1a9e6b32ce0a2f163565e9 1081 Gene3D G3DSA:1.25.40.10 661 863 1.4E-15 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02196 ec2adb700a1a9e6b32ce0a2f163565e9 1081 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 75 247 5.2E-32 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH02196 ec2adb700a1a9e6b32ce0a2f163565e9 1081 SUPERFAMILY SSF55073 73 254 1.51E-53 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02196 ec2adb700a1a9e6b32ce0a2f163565e9 1081 Pfam PF13191 AAA ATPase domain 276 467 1.3E-18 T 12-10-2018 AMJ96_CH02196 ec2adb700a1a9e6b32ce0a2f163565e9 1081 SUPERFAMILY SSF52540 275 586 9.64E-13 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02196 ec2adb700a1a9e6b32ce0a2f163565e9 1081 SUPERFAMILY SSF48452 822 1062 1.52E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02196 ec2adb700a1a9e6b32ce0a2f163565e9 1081 SMART SM00044 41 236 1.6E-19 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH02196 ec2adb700a1a9e6b32ce0a2f163565e9 1081 SMART SM00028 743 776 150.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02196 ec2adb700a1a9e6b32ce0a2f163565e9 1081 SMART SM00028 873 906 17.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02196 ec2adb700a1a9e6b32ce0a2f163565e9 1081 SMART SM00028 994 1027 0.87 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02196 ec2adb700a1a9e6b32ce0a2f163565e9 1081 SMART SM00028 823 856 43.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02196 ec2adb700a1a9e6b32ce0a2f163565e9 1081 SMART SM00028 913 945 310.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02196 ec2adb700a1a9e6b32ce0a2f163565e9 1081 SMART SM00028 1034 1067 400.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02196 ec2adb700a1a9e6b32ce0a2f163565e9 1081 Gene3D G3DSA:3.30.70.1230 66 265 1.1E-57 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02196 ec2adb700a1a9e6b32ce0a2f163565e9 1081 Pfam PF12773 Double zinc ribbon 3 46 2.0E-7 T 12-10-2018 IPR025874 Double zinc ribbon AMJ96_CH02196 ec2adb700a1a9e6b32ce0a2f163565e9 1081 Pfam PF13424 Tetratricopeptide repeat 957 1026 3.5E-7 T 12-10-2018 AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 SUPERFAMILY SSF50249 621 704 2.2E-20 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 SUPERFAMILY SSF54791 556 641 2.16E-22 T 12-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 SUPERFAMILY SSF54211 3 144 6.07E-52 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 240 321 3.8E-24 T 12-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 SUPERFAMILY SSF54211 295 489 3.54E-49 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 Pfam PF00013 KH domain 557 614 1.9E-10 T 12-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 SMART SM00316 621 691 2.7E-21 T 12-10-2018 IPR022967 RNA-binding domain, S1 AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 Gene3D G3DSA:2.40.50.140 623 695 4.7E-30 T 12-10-2018 AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 692 0.0 T 12-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 PIRSF PIRSF005499 1 712 4.4E-299 T 12-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 SUPERFAMILY SSF55666 451 546 5.05E-27 T 12-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 Gene3D G3DSA:3.30.230.70 1 230 9.1E-87 T 12-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 Pfam PF03725 3' exoribonuclease family, domain 2 461 528 1.5E-4 T 12-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 Pfam PF03725 3' exoribonuclease family, domain 2 147 211 8.1E-13 T 12-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 Pfam PF01138 3' exoribonuclease family, domain 1 325 457 5.5E-22 T 12-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 Pfam PF01138 3' exoribonuclease family, domain 1 13 144 7.1E-23 T 12-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 694 30.803 T 12-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 Pfam PF00575 S1 RNA binding domain 619 691 1.1E-16 T 12-10-2018 IPR003029 S1 domain GO:0003676 AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 SUPERFAMILY SSF46915 240 322 2.38E-18 T 12-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 SUPERFAMILY SSF55666 145 235 5.75E-30 T 12-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 Gene3D G3DSA:3.30.1370.10 551 622 8.7E-20 T 12-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 SMART SM00322 553 618 3.7E-12 T 12-10-2018 IPR004087 K Homology domain GO:0003676 AMJ96_CH00114 b7c6c00831813b7fc0c64f2d33f018ca 712 Gene3D G3DSA:3.30.230.70 231 550 4.4E-117 T 12-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMJ96_CH00591 4e7326430183cc792e1d2ec5e394a3d4 686 Gene3D G3DSA:3.40.50.300 6 289 6.8E-77 T 12-10-2018 AMJ96_CH00591 4e7326430183cc792e1d2ec5e394a3d4 686 Gene3D G3DSA:1.10.486.10 401 544 7.4E-74 T 12-10-2018 AMJ96_CH00591 4e7326430183cc792e1d2ec5e394a3d4 686 SUPERFAMILY SSF52540 3 628 6.05E-127 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00591 4e7326430183cc792e1d2ec5e394a3d4 686 Pfam PF00580 UvrD/REP helicase N-terminal domain 24 287 3.2E-55 T 12-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AMJ96_CH00591 4e7326430183cc792e1d2ec5e394a3d4 686 Pfam PF13361 UvrD-like helicase C-terminal domain 297 444 3.3E-22 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMJ96_CH00591 4e7326430183cc792e1d2ec5e394a3d4 686 Pfam PF13361 UvrD-like helicase C-terminal domain 558 615 1.1E-16 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMJ96_CH00591 4e7326430183cc792e1d2ec5e394a3d4 686 Gene3D G3DSA:3.40.50.300 300 631 7.4E-74 T 12-10-2018 AMJ96_CH00591 4e7326430183cc792e1d2ec5e394a3d4 686 Gene3D G3DSA:1.10.10.160 123 208 6.8E-77 T 12-10-2018 IPR013986 DExx box DNA helicase domain superfamily AMJ96_CH01074 904c5348580fa74d3f146abe7b20b361 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 3.2E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01074 904c5348580fa74d3f146abe7b20b361 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.2E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01074 904c5348580fa74d3f146abe7b20b361 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 3.2E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01074 904c5348580fa74d3f146abe7b20b361 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 3.2E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01074 904c5348580fa74d3f146abe7b20b361 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 3.2E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01074 904c5348580fa74d3f146abe7b20b361 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 3.2E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01074 904c5348580fa74d3f146abe7b20b361 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH01074 904c5348580fa74d3f146abe7b20b361 248 Gene3D G3DSA:3.40.50.720 1 248 1.1E-84 T 12-10-2018 AMJ96_CH01074 904c5348580fa74d3f146abe7b20b361 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 2.1E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01074 904c5348580fa74d3f146abe7b20b361 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 2.1E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01074 904c5348580fa74d3f146abe7b20b361 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 2.1E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01074 904c5348580fa74d3f146abe7b20b361 248 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 167 0.004 T 12-10-2018 AMJ96_CH01074 904c5348580fa74d3f146abe7b20b361 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 247 1.2E-65 T 12-10-2018 AMJ96_CH01074 904c5348580fa74d3f146abe7b20b361 248 SUPERFAMILY SSF51735 6 247 2.9E-82 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01103 ae1bf29e5748c23a27b4a46200b1dc2c 109 SMART SM00418 9 88 9.8E-19 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH01103 ae1bf29e5748c23a27b4a46200b1dc2c 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 44 59 9.3E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH01103 ae1bf29e5748c23a27b4a46200b1dc2c 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 11 26 9.3E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH01103 ae1bf29e5748c23a27b4a46200b1dc2c 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 59 74 9.3E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH01103 ae1bf29e5748c23a27b4a46200b1dc2c 109 Gene3D G3DSA:1.10.10.10 2 108 5.4E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01103 ae1bf29e5748c23a27b4a46200b1dc2c 109 SUPERFAMILY SSF46785 7 100 9.87E-27 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01103 ae1bf29e5748c23a27b4a46200b1dc2c 109 Pfam PF12840 Helix-turn-helix domain 9 68 5.6E-12 T 12-10-2018 AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 SUPERFAMILY SSF56712 1 614 8.11E-181 T 12-10-2018 IPR023405 DNA topoisomerase, type IA, core domain AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 285 307 - T 12-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 SMART SM00493 1 101 4.4E-25 T 12-10-2018 IPR006171 TOPRIM domain AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 Pfam PF01751 Toprim domain 3 115 6.9E-23 T 12-10-2018 IPR006171 TOPRIM domain AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 Gene3D G3DSA:1.10.290.10 256 391 3.0E-163 T 12-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 Gene3D G3DSA:1.10.460.10 140 564 3.0E-163 T 12-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 SMART SM00436 106 194 1.0E-43 T 12-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 Gene3D G3DSA:3.40.50.140 1 136 1.2E-45 T 12-10-2018 AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 Pfam PF13368 Topoisomerase C-terminal repeat 721 773 1.2E-16 T 12-10-2018 IPR025589 Topoisomerase C-terminal repeat AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 Pfam PF13368 Topoisomerase C-terminal repeat 663 717 4.2E-15 T 12-10-2018 IPR025589 Topoisomerase C-terminal repeat AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 Pfam PF13368 Topoisomerase C-terminal repeat 791 840 1.6E-18 T 12-10-2018 IPR025589 Topoisomerase C-terminal repeat AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 4 641 2.0E-230 T 12-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 487 501 8.4E-34 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 164 182 8.4E-34 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 75 88 8.4E-34 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 298 307 8.4E-34 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 376 392 8.4E-34 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 Hamap MF_00952 DNA topoisomerase 1 [topA]. 1 742 52.658 T 12-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 SUPERFAMILY SSF57783 606 644 1.41E-8 T 12-10-2018 AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 607 642 2.6E-13 T 12-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 Pfam PF01131 DNA topoisomerase 130 561 4.3E-119 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 SMART SM00437 248 524 2.2E-100 T 12-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 AMJ96_CH01671 f76271aecfad87bb96d83c22c1f26dd3 884 Gene3D G3DSA:2.70.20.10 186 471 3.0E-163 T 12-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 AMJ96_CH02331 8677b9866584d019eb78d70c8ea6386d 225 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 34 48 - T 12-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMJ96_CH02331 8677b9866584d019eb78d70c8ea6386d 225 SUPERFAMILY SSF51366 5 217 1.83E-73 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMJ96_CH02331 8677b9866584d019eb78d70c8ea6386d 225 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 12-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMJ96_CH02331 8677b9866584d019eb78d70c8ea6386d 225 Gene3D G3DSA:3.20.20.70 2 224 2.0E-83 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH02331 8677b9866584d019eb78d70c8ea6386d 225 PIRSF PIRSF001461 1 225 9.2E-90 T 12-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMJ96_CH02331 8677b9866584d019eb78d70c8ea6386d 225 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 7 204 1.5E-86 T 12-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMJ96_CH02331 8677b9866584d019eb78d70c8ea6386d 225 Pfam PF00834 Ribulose-phosphate 3 epimerase family 7 201 3.6E-81 T 12-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AMJ96_PD00236 3eae94783b80124ff847cd95a46438f2 351 Gene3D G3DSA:2.40.50.100 240 347 6.4E-10 T 12-10-2018 AMJ96_PD00236 3eae94783b80124ff847cd95a46438f2 351 SMART SM00382 27 215 6.4E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00236 3eae94783b80124ff847cd95a46438f2 351 Gene3D G3DSA:2.40.50.140 278 337 6.4E-10 T 12-10-2018 AMJ96_PD00236 3eae94783b80124ff847cd95a46438f2 351 Pfam PF08402 TOBE domain 275 344 2.1E-9 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_PD00236 3eae94783b80124ff847cd95a46438f2 351 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00236 3eae94783b80124ff847cd95a46438f2 351 Gene3D G3DSA:3.40.50.300 1 237 9.9E-77 T 12-10-2018 AMJ96_PD00236 3eae94783b80124ff847cd95a46438f2 351 SUPERFAMILY SSF50331 236 350 1.07E-16 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_PD00236 3eae94783b80124ff847cd95a46438f2 351 Pfam PF00005 ABC transporter 19 160 3.3E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00236 3eae94783b80124ff847cd95a46438f2 351 SUPERFAMILY SSF52540 3 241 1.45E-83 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02142 e76adebcf65ae7d880d3f8452a0b3bb5 306 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 280 1.0E-35 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH00052 58ca54293bd7ce957e2f20ac23e20fc8 470 SUPERFAMILY SSF48264 10 464 2.62E-93 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH00052 58ca54293bd7ce957e2f20ac23e20fc8 470 PRINTS PR00463 E-class P450 group I signature 412 435 9.8E-21 T 12-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH00052 58ca54293bd7ce957e2f20ac23e20fc8 470 PRINTS PR00463 E-class P450 group I signature 280 306 9.8E-21 T 12-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH00052 58ca54293bd7ce957e2f20ac23e20fc8 470 PRINTS PR00463 E-class P450 group I signature 367 391 9.8E-21 T 12-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH00052 58ca54293bd7ce957e2f20ac23e20fc8 470 PRINTS PR00463 E-class P450 group I signature 402 412 9.8E-21 T 12-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH00052 58ca54293bd7ce957e2f20ac23e20fc8 470 PRINTS PR00463 E-class P450 group I signature 260 277 9.8E-21 T 12-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH00052 58ca54293bd7ce957e2f20ac23e20fc8 470 Pfam PF00067 Cytochrome P450 53 451 8.4E-71 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH00052 58ca54293bd7ce957e2f20ac23e20fc8 470 PRINTS PR00385 P450 superfamily signature 412 423 8.5E-13 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH00052 58ca54293bd7ce957e2f20ac23e20fc8 470 PRINTS PR00385 P450 superfamily signature 323 334 8.5E-13 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH00052 58ca54293bd7ce957e2f20ac23e20fc8 470 PRINTS PR00385 P450 superfamily signature 271 288 8.5E-13 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH00052 58ca54293bd7ce957e2f20ac23e20fc8 470 PRINTS PR00385 P450 superfamily signature 403 412 8.5E-13 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH00052 58ca54293bd7ce957e2f20ac23e20fc8 470 Gene3D G3DSA:1.10.630.10 23 468 2.3E-96 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH00052 58ca54293bd7ce957e2f20ac23e20fc8 470 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 405 414 - T 12-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 AMJ96_CH00898 36db36cf47c71d7d73de97f9bce6da2b 265 SUPERFAMILY SSF53335 27 220 7.35E-21 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH00898 36db36cf47c71d7d73de97f9bce6da2b 265 Gene3D G3DSA:3.40.50.150 32 250 1.2E-51 T 12-10-2018 AMJ96_CH00898 36db36cf47c71d7d73de97f9bce6da2b 265 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 127 133 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMJ96_CH00898 36db36cf47c71d7d73de97f9bce6da2b 265 Pfam PF05175 Methyltransferase small domain 34 180 3.3E-10 T 12-10-2018 IPR007848 Methyltransferase small domain GO:0008168 AMJ96_PB00218 591918e0307ab288f420cb1d1dd5e7f5 294 SUPERFAMILY SSF46689 242 290 1.12E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PB00218 591918e0307ab288f420cb1d1dd5e7f5 294 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 243 285 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_PB00218 591918e0307ab288f420cb1d1dd5e7f5 294 Pfam PF12833 Helix-turn-helix domain 212 290 3.2E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PB00218 591918e0307ab288f420cb1d1dd5e7f5 294 Gene3D G3DSA:1.10.10.60 187 292 1.1E-30 T 12-10-2018 AMJ96_PB00218 591918e0307ab288f420cb1d1dd5e7f5 294 SMART SM00342 206 289 4.5E-27 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PB00218 591918e0307ab288f420cb1d1dd5e7f5 294 SUPERFAMILY SSF46689 191 240 5.82E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02877 20454cb870cc6c23628af2aa84c1f52f 443 Gene3D G3DSA:3.30.465.10 359 437 4.5E-26 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMJ96_CH02877 20454cb870cc6c23628af2aa84c1f52f 443 Pfam PF01595 Domain of unknown function DUF21 16 208 1.9E-45 T 12-10-2018 IPR002550 CNNM, transmembrane domain AMJ96_CH02877 20454cb870cc6c23628af2aa84c1f52f 443 Gene3D G3DSA:3.10.580.10 208 358 3.9E-39 T 12-10-2018 AMJ96_CH02877 20454cb870cc6c23628af2aa84c1f52f 443 SUPERFAMILY SSF56176 355 438 3.82E-21 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMJ96_CH02877 20454cb870cc6c23628af2aa84c1f52f 443 SMART SM01091 358 437 5.6E-28 T 12-10-2018 IPR005170 Transporter-associated domain AMJ96_CH02877 20454cb870cc6c23628af2aa84c1f52f 443 Pfam PF03471 Transporter associated domain 359 436 6.6E-19 T 12-10-2018 IPR005170 Transporter-associated domain AMJ96_CH02877 20454cb870cc6c23628af2aa84c1f52f 443 Pfam PF00571 CBS domain 296 345 8.9E-8 T 12-10-2018 IPR000644 CBS domain AMJ96_CH02877 20454cb870cc6c23628af2aa84c1f52f 443 SMART SM00116 235 284 15.0 T 12-10-2018 IPR000644 CBS domain AMJ96_CH02877 20454cb870cc6c23628af2aa84c1f52f 443 SMART SM00116 297 345 0.0025 T 12-10-2018 IPR000644 CBS domain AMJ96_CH02877 20454cb870cc6c23628af2aa84c1f52f 443 SUPERFAMILY SSF54631 214 347 3.77E-25 T 12-10-2018 AMJ96_CH04202 31040364736258b1883dec3ebb9d48b0 301 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 5 285 31.746 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMJ96_CH04202 31040364736258b1883dec3ebb9d48b0 301 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 6 282 4.0E-57 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMJ96_CH04202 31040364736258b1883dec3ebb9d48b0 301 SUPERFAMILY SSF54506 5 131 1.22E-32 T 12-10-2018 AMJ96_CH04202 31040364736258b1883dec3ebb9d48b0 301 Gene3D G3DSA:3.10.310.10 116 274 3.3E-71 T 12-10-2018 AMJ96_CH04202 31040364736258b1883dec3ebb9d48b0 301 Pfam PF01678 Diaminopimelate epimerase 7 123 4.5E-18 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMJ96_CH04202 31040364736258b1883dec3ebb9d48b0 301 Pfam PF01678 Diaminopimelate epimerase 158 277 7.1E-17 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMJ96_CH04202 31040364736258b1883dec3ebb9d48b0 301 SUPERFAMILY SSF54506 143 283 1.83E-40 T 12-10-2018 AMJ96_CH04202 31040364736258b1883dec3ebb9d48b0 301 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 67 81 - T 12-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMJ96_CH04202 31040364736258b1883dec3ebb9d48b0 301 Gene3D G3DSA:3.10.310.10 7 276 3.3E-71 T 12-10-2018 AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 531 717 1.5E-40 T 12-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 SUPERFAMILY SSF52317 528 719 1.48E-47 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 Pfam PF00425 chorismate binding enzyme 247 499 3.1E-66 T 12-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 TIGRFAM TIGR01815 TrpE-clade3: anthranilate synthase 13 729 0.0 T 12-10-2018 IPR010112 Anthranilate synthase GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 PRINTS PR00097 Anthranilate synthase component II signature 693 706 2.2E-23 T 12-10-2018 AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 PRINTS PR00097 Anthranilate synthase component II signature 627 635 2.2E-23 T 12-10-2018 AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 PRINTS PR00097 Anthranilate synthase component II signature 531 545 2.2E-23 T 12-10-2018 AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 PRINTS PR00097 Anthranilate synthase component II signature 602 613 2.2E-23 T 12-10-2018 AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 PRINTS PR00097 Anthranilate synthase component II signature 648 660 2.2E-23 T 12-10-2018 AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 PRINTS PR00097 Anthranilate synthase component II signature 575 584 2.2E-23 T 12-10-2018 AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 PIRSF PIRSF036934 1 729 0.0 T 12-10-2018 IPR010112 Anthranilate synthase GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 PRINTS PR00096 Glutamine amidotransferase superfamily signature 602 613 6.0E-11 T 12-10-2018 AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 PRINTS PR00096 Glutamine amidotransferase superfamily signature 693 706 6.0E-11 T 12-10-2018 AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 PRINTS PR00096 Glutamine amidotransferase superfamily signature 575 584 6.0E-11 T 12-10-2018 AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 Gene3D G3DSA:3.40.50.880 529 721 4.2E-50 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 Pfam PF00117 Glutamine amidotransferase class-I 533 707 3.6E-44 T 12-10-2018 IPR017926 Glutamine amidotransferase AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 SUPERFAMILY SSF56322 24 507 5.89E-123 T 12-10-2018 IPR005801 ADC synthase GO:0009058 AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 Gene3D G3DSA:3.60.120.10 21 514 1.3E-126 T 12-10-2018 IPR005801 ADC synthase GO:0009058 AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 Pfam PF04715 Anthranilate synthase component I, N terminal region 39 206 1.6E-7 T 12-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 572 586 2.1E-6 T 12-10-2018 AMJ96_CH03231 c2e400cb701a63dd6e3788a9a1c6c261 729 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 602 618 2.1E-6 T 12-10-2018 AMJ96_CH01616 c7b127522bf88b6a95f3d7b0125c1649 709 Pfam PF00990 Diguanylate cyclase, GGDEF domain 295 444 9.0E-30 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01616 c7b127522bf88b6a95f3d7b0125c1649 709 SUPERFAMILY SSF141868 465 706 2.09E-74 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH01616 c7b127522bf88b6a95f3d7b0125c1649 709 Pfam PF05228 CHASE4 domain 61 216 6.5E-17 T 12-10-2018 IPR007892 CHASE4 AMJ96_CH01616 c7b127522bf88b6a95f3d7b0125c1649 709 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 294 446 7.7E-26 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01616 c7b127522bf88b6a95f3d7b0125c1649 709 SMART SM00267 285 449 2.0E-40 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01616 c7b127522bf88b6a95f3d7b0125c1649 709 Gene3D G3DSA:3.20.20.450 463 709 4.1E-80 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH01616 c7b127522bf88b6a95f3d7b0125c1649 709 Gene3D G3DSA:3.30.70.270 292 462 1.9E-41 T 12-10-2018 AMJ96_CH01616 c7b127522bf88b6a95f3d7b0125c1649 709 Pfam PF00563 EAL domain 467 694 1.8E-64 T 12-10-2018 IPR001633 EAL domain AMJ96_CH01616 c7b127522bf88b6a95f3d7b0125c1649 709 SMART SM00052 459 699 7.8E-82 T 12-10-2018 IPR001633 EAL domain AMJ96_CH01616 c7b127522bf88b6a95f3d7b0125c1649 709 SUPERFAMILY SSF55073 300 451 3.22E-35 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02433 16215e87393e33ebcb4c949ef9e58945 612 Pfam PF00664 ABC transporter transmembrane region 55 326 3.6E-41 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_CH02433 16215e87393e33ebcb4c949ef9e58945 612 SMART SM00382 399 585 1.3E-19 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02433 16215e87393e33ebcb4c949ef9e58945 612 SUPERFAMILY SSF52540 362 609 8.47E-94 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02433 16215e87393e33ebcb4c949ef9e58945 612 ProSitePatterns PS00211 ABC transporters family signature. 511 525 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02433 16215e87393e33ebcb4c949ef9e58945 612 SUPERFAMILY SSF90123 39 361 3.53E-64 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH02433 16215e87393e33ebcb4c949ef9e58945 612 Pfam PF00005 ABC transporter 390 539 9.3E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02433 16215e87393e33ebcb4c949ef9e58945 612 Gene3D G3DSA:3.40.50.300 366 611 4.5E-92 T 12-10-2018 AMJ96_CH02433 16215e87393e33ebcb4c949ef9e58945 612 Gene3D G3DSA:1.20.1560.10 29 355 1.1E-64 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH03154 d2a7dbe1e613dbc76cc92d099c0d2ff0 328 Gene3D G3DSA:3.90.550.10 32 290 1.2E-52 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03154 d2a7dbe1e613dbc76cc92d099c0d2ff0 328 Pfam PF01501 Glycosyl transferase family 8 33 266 3.2E-33 T 12-10-2018 IPR002495 Glycosyl transferase, family 8 GO:0016757 AMJ96_CH03154 d2a7dbe1e613dbc76cc92d099c0d2ff0 328 SUPERFAMILY SSF53448 33 288 2.78E-46 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 136 154 6.3E-39 T 12-10-2018 AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 6.3E-39 T 12-10-2018 AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 295 317 6.3E-39 T 12-10-2018 AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 6.3E-39 T 12-10-2018 AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 282 6.3E-39 T 12-10-2018 AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 PIRSF PIRSF000350 1 467 3.0E-92 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 SUPERFAMILY SSF51905 1 368 1.53E-63 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 38 48 - T 12-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 SUPERFAMILY SSF55424 345 467 1.03E-44 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 Gene3D G3DSA:3.50.50.60 148 273 2.3E-119 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 Gene3D G3DSA:3.50.50.60 3 330 2.3E-119 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 349 458 5.6E-42 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 2 468 2.4E-175 T 12-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 330 2.6E-68 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 1.1E-78 T 12-10-2018 AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 410 425 1.1E-78 T 12-10-2018 AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 345 366 1.1E-78 T 12-10-2018 AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 432 452 1.1E-78 T 12-10-2018 AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 310 317 1.1E-78 T 12-10-2018 AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 1.1E-78 T 12-10-2018 AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 267 281 1.1E-78 T 12-10-2018 AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 139 148 1.1E-78 T 12-10-2018 AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 37 52 1.1E-78 T 12-10-2018 AMJ96_CH04131 317ec99f5f0e072ebbb111662b593f6a 468 Gene3D G3DSA:3.30.390.30 348 468 8.6E-50 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMJ96_CH04260 511ac67503434dc84cb9dc7400748a2b 353 Gene3D G3DSA:3.90.1150.10 21 340 3.8E-109 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH04260 511ac67503434dc84cb9dc7400748a2b 353 Gene3D G3DSA:3.40.640.10 38 259 3.8E-109 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH04260 511ac67503434dc84cb9dc7400748a2b 353 SUPERFAMILY SSF53383 4 351 4.92E-82 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH04260 511ac67503434dc84cb9dc7400748a2b 353 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 9 350 4.3E-92 T 12-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 AMJ96_CH04260 511ac67503434dc84cb9dc7400748a2b 353 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 4 351 57.218 T 12-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 AMJ96_CH04260 511ac67503434dc84cb9dc7400748a2b 353 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 207 216 - T 12-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 AMJ96_CH04260 511ac67503434dc84cb9dc7400748a2b 353 Pfam PF00155 Aminotransferase class I and II 26 347 3.4E-59 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 346 454 5.5E-33 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 Gene3D G3DSA:3.50.50.60 8 332 9.7E-108 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 Gene3D G3DSA:3.30.390.30 345 465 2.8E-41 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 PIRSF PIRSF000350 2 458 1.6E-80 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 2.7E-37 T 12-10-2018 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 2.7E-37 T 12-10-2018 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 292 314 2.7E-37 T 12-10-2018 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 280 2.7E-37 T 12-10-2018 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 140 158 2.7E-37 T 12-10-2018 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 4.1E-67 T 12-10-2018 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 265 279 4.1E-67 T 12-10-2018 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 4.1E-67 T 12-10-2018 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 4.1E-67 T 12-10-2018 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 307 314 4.1E-67 T 12-10-2018 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 342 363 4.1E-67 T 12-10-2018 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 407 422 4.1E-67 T 12-10-2018 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 152 4.1E-67 T 12-10-2018 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 429 449 4.1E-67 T 12-10-2018 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 Gene3D G3DSA:3.50.50.60 152 271 9.7E-108 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 SUPERFAMILY SSF51905 4 337 9.07E-58 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 8 465 1.9E-151 T 12-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 327 3.6E-67 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 12-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AMJ96_PA00091 84f55176bdf71fad3210017cf70585f3 465 SUPERFAMILY SSF55424 344 464 6.53E-36 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMJ96_PC00272 7efe2e6663ece7fa2a0685f3971ca7db 230 Gene3D G3DSA:1.10.10.10 132 230 1.7E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00272 7efe2e6663ece7fa2a0685f3971ca7db 230 SMART SM00448 6 117 4.2E-39 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PC00272 7efe2e6663ece7fa2a0685f3971ca7db 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 226 6.1E-23 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_PC00272 7efe2e6663ece7fa2a0685f3971ca7db 230 SMART SM00862 152 226 1.2E-22 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_PC00272 7efe2e6663ece7fa2a0685f3971ca7db 230 SUPERFAMILY SSF52172 6 186 8.68E-40 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PC00272 7efe2e6663ece7fa2a0685f3971ca7db 230 Gene3D G3DSA:3.40.50.2300 2 131 1.5E-33 T 12-10-2018 AMJ96_PC00272 7efe2e6663ece7fa2a0685f3971ca7db 230 Pfam PF00072 Response regulator receiver domain 8 117 3.2E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03999 76412128666bac44f18f0f401f18a19b 424 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 70 420 7.4E-109 T 12-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMJ96_CH03999 76412128666bac44f18f0f401f18a19b 424 SUPERFAMILY SSF55021 346 422 5.19E-20 T 12-10-2018 AMJ96_CH03999 76412128666bac44f18f0f401f18a19b 424 Gene3D G3DSA:3.30.2130.10 264 424 1.5E-54 T 12-10-2018 AMJ96_CH03999 76412128666bac44f18f0f401f18a19b 424 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 12-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMJ96_CH03999 76412128666bac44f18f0f401f18a19b 424 SUPERFAMILY SSF55021 266 344 5.31E-20 T 12-10-2018 AMJ96_CH03999 76412128666bac44f18f0f401f18a19b 424 PIRSF PIRSF000726 57 424 7.7E-122 T 12-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMJ96_CH03999 76412128666bac44f18f0f401f18a19b 424 PIRSF PIRSF000726 1 61 5.3E-18 T 12-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMJ96_CH03999 76412128666bac44f18f0f401f18a19b 424 Pfam PF00696 Amino acid kinase family 3 237 3.7E-45 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMJ96_CH03999 76412128666bac44f18f0f401f18a19b 424 Pfam PF13840 ACT domain 355 417 7.8E-13 T 12-10-2018 IPR027795 CASTOR, ACT domain AMJ96_CH03999 76412128666bac44f18f0f401f18a19b 424 Pfam PF01842 ACT domain 285 340 3.2E-12 T 12-10-2018 IPR002912 ACT domain AMJ96_CH03999 76412128666bac44f18f0f401f18a19b 424 SUPERFAMILY SSF53633 3 261 3.67E-70 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMJ96_CH03999 76412128666bac44f18f0f401f18a19b 424 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 3 419 8.9E-126 T 12-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 AMJ96_CH03999 76412128666bac44f18f0f401f18a19b 424 Gene3D G3DSA:3.40.1160.10 1 263 9.3E-79 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMJ96_PC00015 2f2fa9d121a4c3b562099c2385c442b7 224 Gene3D G3DSA:1.10.357.10 74 216 1.9E-29 T 12-10-2018 AMJ96_PC00015 2f2fa9d121a4c3b562099c2385c442b7 224 SUPERFAMILY SSF46689 6 83 4.21E-18 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PC00015 2f2fa9d121a4c3b562099c2385c442b7 224 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 3.4E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PC00015 2f2fa9d121a4c3b562099c2385c442b7 224 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 3.4E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PC00015 2f2fa9d121a4c3b562099c2385c442b7 224 Gene3D G3DSA:1.10.10.60 1 62 1.4E-18 T 12-10-2018 AMJ96_PC00015 2f2fa9d121a4c3b562099c2385c442b7 224 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 154 205 9.6E-15 T 12-10-2018 IPR039536 Transcriptional regulator TetR, C-terminal, Proteobacteria type AMJ96_PC00015 2f2fa9d121a4c3b562099c2385c442b7 224 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 3.8E-13 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PA00266 44faa6c9f698779b497fa776d9ec69c7 410 SUPERFAMILY SSF53850 26 402 1.41E-47 T 12-10-2018 AMJ96_PA00266 44faa6c9f698779b497fa776d9ec69c7 410 Gene3D G3DSA:3.40.190.10 29 370 3.5E-123 T 12-10-2018 AMJ96_PA00266 44faa6c9f698779b497fa776d9ec69c7 410 Gene3D G3DSA:3.40.190.10 143 392 3.5E-123 T 12-10-2018 AMJ96_PA00266 44faa6c9f698779b497fa776d9ec69c7 410 Pfam PF13416 Bacterial extracellular solute-binding protein 49 350 1.0E-21 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PD00131 8c3037e8b04f1530302e8d6a3e49d28e 155 SUPERFAMILY SSF55729 1 148 3.04E-23 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_PD00131 8c3037e8b04f1530302e8d6a3e49d28e 155 Gene3D G3DSA:3.40.630.30 1 152 8.0E-24 T 12-10-2018 AMJ96_PD00131 8c3037e8b04f1530302e8d6a3e49d28e 155 Pfam PF00583 Acetyltransferase (GNAT) family 21 142 8.5E-13 T 12-10-2018 IPR000182 GNAT domain AMJ96_PD00623 4e0a31cbbecd67e321cc9791852893d4 575 SMART SM00382 41 247 3.5E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00623 4e0a31cbbecd67e321cc9791852893d4 575 SMART SM00382 321 518 1.5E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00623 4e0a31cbbecd67e321cc9791852893d4 575 SUPERFAMILY SSF52540 296 540 2.51E-66 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00623 4e0a31cbbecd67e321cc9791852893d4 575 ProSitePatterns PS00211 ABC transporters family signature. 170 184 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00623 4e0a31cbbecd67e321cc9791852893d4 575 Pfam PF00005 ABC transporter 33 197 3.0E-24 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00623 4e0a31cbbecd67e321cc9791852893d4 575 SUPERFAMILY SSF52540 12 268 2.61E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00623 4e0a31cbbecd67e321cc9791852893d4 575 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00623 4e0a31cbbecd67e321cc9791852893d4 575 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 250 286 0.001 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PD00623 4e0a31cbbecd67e321cc9791852893d4 575 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 520 552 6.7E-8 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PD00623 4e0a31cbbecd67e321cc9791852893d4 575 Gene3D G3DSA:3.40.50.300 295 572 1.8E-80 T 12-10-2018 AMJ96_PD00623 4e0a31cbbecd67e321cc9791852893d4 575 Gene3D G3DSA:3.40.50.300 10 294 4.9E-83 T 12-10-2018 AMJ96_PD00623 4e0a31cbbecd67e321cc9791852893d4 575 Pfam PF00005 ABC transporter 312 469 6.8E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH04087 388e115a12245af9fa68f6866921b8b2 361 Pfam PF00005 ABC transporter 26 167 9.5E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH04087 388e115a12245af9fa68f6866921b8b2 361 Gene3D G3DSA:2.40.50.940 228 354 5.4E-31 T 12-10-2018 AMJ96_CH04087 388e115a12245af9fa68f6866921b8b2 361 Gene3D G3DSA:2.40.50.140 289 345 5.4E-31 T 12-10-2018 AMJ96_CH04087 388e115a12245af9fa68f6866921b8b2 361 SUPERFAMILY SSF52540 10 248 1.11E-87 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04087 388e115a12245af9fa68f6866921b8b2 361 Pfam PF08402 TOBE domain 282 353 1.9E-13 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_CH04087 388e115a12245af9fa68f6866921b8b2 361 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH04087 388e115a12245af9fa68f6866921b8b2 361 SMART SM00382 34 217 5.2E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04087 388e115a12245af9fa68f6866921b8b2 361 SUPERFAMILY SSF50331 242 360 2.38E-25 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH04087 388e115a12245af9fa68f6866921b8b2 361 Gene3D G3DSA:3.40.50.300 10 227 1.8E-69 T 12-10-2018 AMJ96_PD00210 b5330ff96853bf2b1f0bf0ed4abb0968 286 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 144 1.9E-9 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMJ96_PD00210 b5330ff96853bf2b1f0bf0ed4abb0968 286 SUPERFAMILY SSF48179 161 262 3.03E-24 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_PD00210 b5330ff96853bf2b1f0bf0ed4abb0968 286 Pfam PF09130 Domain of unknown function (DUF1932) 188 256 9.5E-20 T 12-10-2018 IPR015814 Phosphogluconate dehydrogenase, NAD-binding, putative, C-terminal AMJ96_PD00210 b5330ff96853bf2b1f0bf0ed4abb0968 286 SUPERFAMILY SSF51735 4 155 5.14E-20 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00210 b5330ff96853bf2b1f0bf0ed4abb0968 286 Gene3D G3DSA:3.40.50.720 3 167 1.7E-37 T 12-10-2018 AMJ96_PC00109 6258993eff22ca68199a48a6b331a1c7 454 PRINTS PR00732 Glycosyl hydrolase family 4 signature 147 164 5.1E-38 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMJ96_PC00109 6258993eff22ca68199a48a6b331a1c7 454 PRINTS PR00732 Glycosyl hydrolase family 4 signature 11 26 5.1E-38 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMJ96_PC00109 6258993eff22ca68199a48a6b331a1c7 454 PRINTS PR00732 Glycosyl hydrolase family 4 signature 199 211 5.1E-38 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMJ96_PC00109 6258993eff22ca68199a48a6b331a1c7 454 PRINTS PR00732 Glycosyl hydrolase family 4 signature 118 138 5.1E-38 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMJ96_PC00109 6258993eff22ca68199a48a6b331a1c7 454 PRINTS PR00732 Glycosyl hydrolase family 4 signature 102 115 5.1E-38 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMJ96_PC00109 6258993eff22ca68199a48a6b331a1c7 454 PRINTS PR00732 Glycosyl hydrolase family 4 signature 80 96 5.1E-38 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMJ96_PC00109 6258993eff22ca68199a48a6b331a1c7 454 PRINTS PR00732 Glycosyl hydrolase family 4 signature 173 184 5.1E-38 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMJ96_PC00109 6258993eff22ca68199a48a6b331a1c7 454 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 147 178 - T 12-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 AMJ96_PC00109 6258993eff22ca68199a48a6b331a1c7 454 Pfam PF02056 Family 4 glycosyl hydrolase 11 193 2.1E-67 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMJ96_PC00109 6258993eff22ca68199a48a6b331a1c7 454 SUPERFAMILY SSF51735 10 176 1.31E-50 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00109 6258993eff22ca68199a48a6b331a1c7 454 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 203 424 2.0E-61 T 12-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 AMJ96_PC00109 6258993eff22ca68199a48a6b331a1c7 454 Gene3D G3DSA:3.90.1820.20 7 447 1.3E-137 T 12-10-2018 AMJ96_PC00109 6258993eff22ca68199a48a6b331a1c7 454 SUPERFAMILY SSF56327 179 452 4.75E-79 T 12-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMJ96_CH00392 518119742c44b4cdbfba55d5cdac3daa 171 SUPERFAMILY SSF55486 47 162 1.78E-44 T 12-10-2018 AMJ96_CH00392 518119742c44b4cdbfba55d5cdac3daa 171 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 126 136 - T 12-10-2018 IPR020549 Endoribonuclease YbeY, conserved site AMJ96_CH00392 518119742c44b4cdbfba55d5cdac3daa 171 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 3 160 24.811 T 12-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMJ96_CH00392 518119742c44b4cdbfba55d5cdac3daa 171 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 50 157 4.7E-39 T 12-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMJ96_CH00392 518119742c44b4cdbfba55d5cdac3daa 171 Gene3D G3DSA:3.40.390.30 5 166 2.9E-47 T 12-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 AMJ96_CH00392 518119742c44b4cdbfba55d5cdac3daa 171 Pfam PF02130 Uncharacterized protein family UPF0054 43 156 3.4E-39 T 12-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AMJ96_CH03270 9dc88e95128f11dcf3d486211bedac97 252 Gene3D G3DSA:3.90.230.10 1 249 2.3E-69 T 12-10-2018 AMJ96_CH03270 9dc88e95128f11dcf3d486211bedac97 252 Pfam PF00557 Metallopeptidase family M24 11 238 3.0E-38 T 12-10-2018 IPR000994 Peptidase M24 AMJ96_CH03270 9dc88e95128f11dcf3d486211bedac97 252 PRINTS PR00599 Methionine aminopeptidase-1 signature 158 170 4.7E-17 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMJ96_CH03270 9dc88e95128f11dcf3d486211bedac97 252 PRINTS PR00599 Methionine aminopeptidase-1 signature 190 202 4.7E-17 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMJ96_CH03270 9dc88e95128f11dcf3d486211bedac97 252 PRINTS PR00599 Methionine aminopeptidase-1 signature 88 104 4.7E-17 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMJ96_CH03270 9dc88e95128f11dcf3d486211bedac97 252 PRINTS PR00599 Methionine aminopeptidase-1 signature 66 79 4.7E-17 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMJ96_CH03270 9dc88e95128f11dcf3d486211bedac97 252 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 1 246 9.1E-72 T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMJ96_CH03270 9dc88e95128f11dcf3d486211bedac97 252 SUPERFAMILY SSF55920 2 248 3.14E-61 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like AMJ96_CH03270 9dc88e95128f11dcf3d486211bedac97 252 Hamap MF_01974 Methionine aminopeptidase [map]. 1 248 31.304 T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMJ96_PC00177 a9160bea371b2b42f2558d0854e07d6d 435 Gene3D G3DSA:3.40.50.300 179 423 8.1E-62 T 12-10-2018 AMJ96_PC00177 a9160bea371b2b42f2558d0854e07d6d 435 SUPERFAMILY SSF52540 80 372 1.92E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00177 a9160bea371b2b42f2558d0854e07d6d 435 Gene3D G3DSA:3.30.450.90 74 178 1.4E-28 T 12-10-2018 AMJ96_PC00177 a9160bea371b2b42f2558d0854e07d6d 435 Pfam PF00437 Type II/IV secretion system protein 81 356 2.3E-72 T 12-10-2018 IPR001482 Type II/IV secretion system protein AMJ96_CH02888 fd4453a49eb61bcadc1276af16adeadc 564 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 263 8.3E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02888 fd4453a49eb61bcadc1276af16adeadc 564 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 370 557 1.7E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02888 fd4453a49eb61bcadc1276af16adeadc 564 SUPERFAMILY SSF161098 12 275 7.63E-45 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02888 fd4453a49eb61bcadc1276af16adeadc 564 Gene3D G3DSA:1.10.3720.10 295 556 1.3E-36 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02888 fd4453a49eb61bcadc1276af16adeadc 564 Gene3D G3DSA:1.10.3720.10 12 277 1.5E-49 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02888 fd4453a49eb61bcadc1276af16adeadc 564 SUPERFAMILY SSF161098 294 553 5.33E-42 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01754 6dcb66f80a0d6cc2e7d34cf728a5de2a 332 SUPERFAMILY SSF51735 1 115 2.37E-10 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01754 6dcb66f80a0d6cc2e7d34cf728a5de2a 332 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 203 324 1.2E-24 T 12-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain AMJ96_CH01754 6dcb66f80a0d6cc2e7d34cf728a5de2a 332 SUPERFAMILY SSF48179 203 325 2.69E-25 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_CH01754 6dcb66f80a0d6cc2e7d34cf728a5de2a 332 Pfam PF02558 Ketopantoate reductase PanE/ApbA 6 175 4.4E-22 T 12-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain AMJ96_CH01754 6dcb66f80a0d6cc2e7d34cf728a5de2a 332 Gene3D G3DSA:1.10.1040.10 203 331 2.1E-37 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMJ96_CH01754 6dcb66f80a0d6cc2e7d34cf728a5de2a 332 Gene3D G3DSA:3.40.50.720 1 202 1.8E-60 T 12-10-2018 AMJ96_PB00120 e018ddd1a6c7940b8895d6f5501299c7 271 Pfam PF13683 Integrase core domain 192 257 3.2E-27 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMJ96_PB00120 e018ddd1a6c7940b8895d6f5501299c7 271 SUPERFAMILY SSF53098 103 258 1.9E-38 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_PB00120 e018ddd1a6c7940b8895d6f5501299c7 271 Pfam PF13276 HTH-like domain 34 86 3.3E-11 T 12-10-2018 IPR025948 HTH-like domain AMJ96_PB00120 e018ddd1a6c7940b8895d6f5501299c7 271 Gene3D G3DSA:3.30.420.10 100 239 2.1E-23 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_PB00398 e018ddd1a6c7940b8895d6f5501299c7 271 Pfam PF13683 Integrase core domain 192 257 3.2E-27 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMJ96_PB00398 e018ddd1a6c7940b8895d6f5501299c7 271 SUPERFAMILY SSF53098 103 258 1.9E-38 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_PB00398 e018ddd1a6c7940b8895d6f5501299c7 271 Pfam PF13276 HTH-like domain 34 86 3.3E-11 T 12-10-2018 IPR025948 HTH-like domain AMJ96_PB00398 e018ddd1a6c7940b8895d6f5501299c7 271 Gene3D G3DSA:3.30.420.10 100 239 2.1E-23 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_CH04361 2a939c8bbb98bd099c7dbf2f815a4550 1591 PIRSF PIRSF036761 1 1590 0.0 T 12-10-2018 IPR007780 NAD-glutamate dehydrogenase, bacteria GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 AMJ96_CH04361 2a939c8bbb98bd099c7dbf2f815a4550 1591 SUPERFAMILY SSF53223 743 929 3.74E-23 T 12-10-2018 AMJ96_CH04361 2a939c8bbb98bd099c7dbf2f815a4550 1591 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 85 1582 0.0 T 12-10-2018 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 AMJ96_CH04361 2a939c8bbb98bd099c7dbf2f815a4550 1591 SUPERFAMILY SSF51735 934 1270 1.12E-25 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PA00300 126339a24de77530dc57656f02c8cd8b 294 SUPERFAMILY SSF46689 233 282 3.54E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PA00300 126339a24de77530dc57656f02c8cd8b 294 SUPERFAMILY SSF51215 22 80 3.92E-10 T 12-10-2018 IPR037923 Transcription regulator HTH-like AMJ96_PA00300 126339a24de77530dc57656f02c8cd8b 294 SUPERFAMILY SSF46689 183 231 3.35E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PA00300 126339a24de77530dc57656f02c8cd8b 294 Pfam PF12833 Helix-turn-helix domain 203 282 1.3E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PA00300 126339a24de77530dc57656f02c8cd8b 294 Gene3D G3DSA:1.10.10.60 231 285 1.1E-15 T 12-10-2018 AMJ96_PA00300 126339a24de77530dc57656f02c8cd8b 294 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 234 277 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_PA00300 126339a24de77530dc57656f02c8cd8b 294 Pfam PF02311 AraC-like ligand binding domain 19 114 1.9E-6 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMJ96_PA00300 126339a24de77530dc57656f02c8cd8b 294 Gene3D G3DSA:1.10.10.60 178 230 3.8E-11 T 12-10-2018 AMJ96_PA00300 126339a24de77530dc57656f02c8cd8b 294 SMART SM00342 200 281 4.2E-21 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH03122 c6fc4b682b30367d1b4e6fc40bf4f9b9 401 Pfam PF00117 Glutamine amidotransferase class-I 211 387 5.8E-46 T 12-10-2018 IPR017926 Glutamine amidotransferase AMJ96_CH03122 c6fc4b682b30367d1b4e6fc40bf4f9b9 401 Gene3D G3DSA:3.50.30.20 12 163 1.1E-48 T 12-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH03122 c6fc4b682b30367d1b4e6fc40bf4f9b9 401 SUPERFAMILY SSF52317 191 392 1.68E-60 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH03122 c6fc4b682b30367d1b4e6fc40bf4f9b9 401 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 14 390 2.0E-126 T 12-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH03122 c6fc4b682b30367d1b4e6fc40bf4f9b9 401 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 14 145 1.3E-44 T 12-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH03122 c6fc4b682b30367d1b4e6fc40bf4f9b9 401 PRINTS PR00097 Anthranilate synthase component II signature 364 377 2.5E-6 T 12-10-2018 AMJ96_CH03122 c6fc4b682b30367d1b4e6fc40bf4f9b9 401 PRINTS PR00097 Anthranilate synthase component II signature 250 259 2.5E-6 T 12-10-2018 AMJ96_CH03122 c6fc4b682b30367d1b4e6fc40bf4f9b9 401 PRINTS PR00097 Anthranilate synthase component II signature 279 290 2.5E-6 T 12-10-2018 AMJ96_CH03122 c6fc4b682b30367d1b4e6fc40bf4f9b9 401 SUPERFAMILY SSF52021 13 159 2.62E-49 T 12-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH03122 c6fc4b682b30367d1b4e6fc40bf4f9b9 401 Gene3D G3DSA:3.40.50.880 167 393 7.8E-69 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH03122 c6fc4b682b30367d1b4e6fc40bf4f9b9 401 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 296 313 3.3E-36 T 12-10-2018 AMJ96_CH03122 c6fc4b682b30367d1b4e6fc40bf4f9b9 401 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 247 261 3.3E-36 T 12-10-2018 AMJ96_CH03122 c6fc4b682b30367d1b4e6fc40bf4f9b9 401 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 208 222 3.3E-36 T 12-10-2018 AMJ96_CH03122 c6fc4b682b30367d1b4e6fc40bf4f9b9 401 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 279 295 3.3E-36 T 12-10-2018 AMJ96_CH03122 c6fc4b682b30367d1b4e6fc40bf4f9b9 401 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 321 332 3.3E-36 T 12-10-2018 AMJ96_CH03122 c6fc4b682b30367d1b4e6fc40bf4f9b9 401 PRINTS PR00096 Glutamine amidotransferase superfamily signature 250 259 7.3E-12 T 12-10-2018 AMJ96_CH03122 c6fc4b682b30367d1b4e6fc40bf4f9b9 401 PRINTS PR00096 Glutamine amidotransferase superfamily signature 279 290 7.3E-12 T 12-10-2018 AMJ96_CH03122 c6fc4b682b30367d1b4e6fc40bf4f9b9 401 PRINTS PR00096 Glutamine amidotransferase superfamily signature 364 377 7.3E-12 T 12-10-2018 AMJ96_CH03122 c6fc4b682b30367d1b4e6fc40bf4f9b9 401 SMART SM01097 12 146 5.0E-75 T 12-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH03122 c6fc4b682b30367d1b4e6fc40bf4f9b9 401 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 12 393 45.428 T 12-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_PC00305 6885490808b7df8116c7f4ca197d4a25 152 Pfam PF02627 Carboxymuconolactone decarboxylase family 13 94 1.2E-19 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMJ96_PC00305 6885490808b7df8116c7f4ca197d4a25 152 SUPERFAMILY SSF69118 11 144 6.81E-42 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_PC00305 6885490808b7df8116c7f4ca197d4a25 152 Gene3D G3DSA:1.20.1290.10 5 148 2.6E-44 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_PC00305 6885490808b7df8116c7f4ca197d4a25 152 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 30 78 5.3E-17 T 12-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMJ96_PB00376 f2e3cdf6688b30f6f673a6e08d614258 244 Gene3D G3DSA:1.10.760.10 45 236 6.3E-66 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_PB00376 f2e3cdf6688b30f6f673a6e08d614258 244 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 8 232 1.8E-97 T 12-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO AMJ96_PB00376 f2e3cdf6688b30f6f673a6e08d614258 244 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 8 239 2.5E-123 T 12-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO AMJ96_PB00376 f2e3cdf6688b30f6f673a6e08d614258 244 SUPERFAMILY SSF46626 22 228 3.25E-25 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_CH00167 4ae0b03baad826e0f8f3ad46ec710619 281 Gene3D G3DSA:3.40.50.300 1 275 3.9E-69 T 12-10-2018 AMJ96_CH00167 4ae0b03baad826e0f8f3ad46ec710619 281 SMART SM00382 26 230 1.5E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00167 4ae0b03baad826e0f8f3ad46ec710619 281 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00167 4ae0b03baad826e0f8f3ad46ec710619 281 Pfam PF00005 ABC transporter 18 173 2.9E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00167 4ae0b03baad826e0f8f3ad46ec710619 281 SUPERFAMILY SSF52540 2 234 6.57E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00167 4ae0b03baad826e0f8f3ad46ec710619 281 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 1 242 1.1E-95 T 12-10-2018 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 AMJ96_CH00118 54d101cf147ffc4d6b09a7bd909a1582 134 SUPERFAMILY SSF89919 8 120 2.62E-28 T 12-10-2018 IPR023799 Ribosome-binding factor A domain superfamily AMJ96_CH00118 54d101cf147ffc4d6b09a7bd909a1582 134 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 11 120 6.1E-15 T 12-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AMJ96_CH00118 54d101cf147ffc4d6b09a7bd909a1582 134 Pfam PF02033 Ribosome-binding factor A 12 118 6.6E-25 T 12-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AMJ96_CH00118 54d101cf147ffc4d6b09a7bd909a1582 134 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 11 118 25.002 T 12-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AMJ96_CH00118 54d101cf147ffc4d6b09a7bd909a1582 134 ProSitePatterns PS01319 Ribosome-binding factor A signature. 83 105 - T 12-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 AMJ96_CH00118 54d101cf147ffc4d6b09a7bd909a1582 134 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 15 102 2.0E-40 T 12-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 AMJ96_CH00118 54d101cf147ffc4d6b09a7bd909a1582 134 Gene3D G3DSA:3.30.300.20 7 112 1.3E-22 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta AMJ96_PD00546 126c9689746718c23bda8d4bb75ead6a 395 Gene3D G3DSA:3.90.1150.10 264 395 6.3E-28 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_PD00546 126c9689746718c23bda8d4bb75ead6a 395 Gene3D G3DSA:3.40.640.10 19 263 2.6E-77 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_PD00546 126c9689746718c23bda8d4bb75ead6a 395 SUPERFAMILY SSF53383 27 391 3.13E-89 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_PD00546 126c9689746718c23bda8d4bb75ead6a 395 PIRSF PIRSF001434 10 394 2.1E-120 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMJ96_PD00546 126c9689746718c23bda8d4bb75ead6a 395 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 27 390 1.5E-96 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMJ96_PA00220 0fe1d263016d00468479cba9937e1f1e 302 SUPERFAMILY SSF82282 3 300 4.32E-77 T 12-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 AMJ96_PA00220 0fe1d263016d00468479cba9937e1f1e 302 Pfam PF02574 Homocysteine S-methyltransferase 6 299 1.2E-55 T 12-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 AMJ96_PA00220 0fe1d263016d00468479cba9937e1f1e 302 Gene3D G3DSA:3.20.20.330 2 301 3.0E-67 T 12-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 AMJ96_PA00220 0fe1d263016d00468479cba9937e1f1e 302 PIRSF PIRSF037505 4 182 2.2E-7 T 12-10-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 AMJ96_PA00220 0fe1d263016d00468479cba9937e1f1e 302 PIRSF PIRSF037505 251 301 1.5 T 12-10-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 AMJ96_PC00070 d0425c6d79ed7c8b09664196b9ff9725 269 SUPERFAMILY SSF53474 1 259 4.09E-63 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PC00070 d0425c6d79ed7c8b09664196b9ff9725 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 105 9.5E-8 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PC00070 d0425c6d79ed7c8b09664196b9ff9725 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 48 63 9.5E-8 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PC00070 d0425c6d79ed7c8b09664196b9ff9725 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 9.5E-8 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PC00070 d0425c6d79ed7c8b09664196b9ff9725 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 205 219 9.5E-8 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PC00070 d0425c6d79ed7c8b09664196b9ff9725 269 Pfam PF12146 Serine aminopeptidase, S33 25 245 4.9E-15 T 12-10-2018 IPR022742 Serine aminopeptidase, S33 AMJ96_PC00070 d0425c6d79ed7c8b09664196b9ff9725 269 Gene3D G3DSA:3.40.50.1820 1 260 1.9E-67 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PC00070 d0425c6d79ed7c8b09664196b9ff9725 269 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 10 260 6.7E-111 T 12-10-2018 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185 AMJ96_PD00665 58f802ec7448f9b58b97844cc291210d 313 Pfam PF10686 Protein of unknown function (DUF2493) 196 262 1.5E-27 T 12-10-2018 IPR019627 Mycobacteriophage D29, Gp61 AMJ96_CH03996 db943a3e9c317e3196407a81fee84faf 286 Gene3D G3DSA:1.10.8.10 4 87 9.3E-18 T 12-10-2018 AMJ96_CH03996 db943a3e9c317e3196407a81fee84faf 286 SUPERFAMILY SSF53335 5 281 2.69E-56 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH03996 db943a3e9c317e3196407a81fee84faf 286 Gene3D G3DSA:3.40.50.150 88 285 4.2E-56 T 12-10-2018 AMJ96_CH03996 db943a3e9c317e3196407a81fee84faf 286 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 27 281 5.0E-84 T 12-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 AMJ96_CH03996 db943a3e9c317e3196407a81fee84faf 286 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 4 282 5.3E-68 T 12-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 AMJ96_CH03996 db943a3e9c317e3196407a81fee84faf 286 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 189 195 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMJ96_CH03996 db943a3e9c317e3196407a81fee84faf 286 Pfam PF05175 Methyltransferase small domain 113 200 1.1E-14 T 12-10-2018 IPR007848 Methyltransferase small domain GO:0008168 AMJ96_CH03996 db943a3e9c317e3196407a81fee84faf 286 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 5 285 41.296 T 12-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 AMJ96_CH03818 73c2d8822907e0f19a498d5dd494b09e 293 Pfam PF05013 N-formylglutamate amidohydrolase 21 251 5.0E-68 T 12-10-2018 IPR007709 N-formylglutamate amidohydrolase AMJ96_CH03818 73c2d8822907e0f19a498d5dd494b09e 293 SUPERFAMILY SSF53187 10 281 8.48E-83 T 12-10-2018 AMJ96_CH03818 73c2d8822907e0f19a498d5dd494b09e 293 Gene3D G3DSA:3.40.630.40 2 285 2.3E-92 T 12-10-2018 AMJ96_PA00201 3f20cd756f257a4db3249b916a106b17 254 SUPERFAMILY SSF51735 5 251 5.82E-78 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PA00201 3f20cd756f257a4db3249b916a106b17 254 Gene3D G3DSA:3.40.50.720 1 253 1.7E-79 T 12-10-2018 AMJ96_PA00201 3f20cd756f257a4db3249b916a106b17 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 251 1.3E-59 T 12-10-2018 AMJ96_PA00201 3f20cd756f257a4db3249b916a106b17 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_PA00201 3f20cd756f257a4db3249b916a106b17 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 5.8E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00201 3f20cd756f257a4db3249b916a106b17 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 5.8E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00201 3f20cd756f257a4db3249b916a106b17 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 5.8E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00201 3f20cd756f257a4db3249b916a106b17 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 5.8E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00201 3f20cd756f257a4db3249b916a106b17 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 5.8E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00201 3f20cd756f257a4db3249b916a106b17 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 5.8E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00201 3f20cd756f257a4db3249b916a106b17 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 1.8E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00201 3f20cd756f257a4db3249b916a106b17 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 1.8E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00201 3f20cd756f257a4db3249b916a106b17 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 1.8E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02319 88098f1da7fba005310e91c445a0eb94 418 Gene3D G3DSA:3.40.50.620 1 228 3.4E-86 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH02319 88098f1da7fba005310e91c445a0eb94 418 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 7 415 4.2E-113 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMJ96_CH02319 88098f1da7fba005310e91c445a0eb94 418 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 48 70 7.6E-25 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMJ96_CH02319 88098f1da7fba005310e91c445a0eb94 418 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 222 234 7.6E-25 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMJ96_CH02319 88098f1da7fba005310e91c445a0eb94 418 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 168 183 7.6E-25 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMJ96_CH02319 88098f1da7fba005310e91c445a0eb94 418 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 189 211 7.6E-25 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AMJ96_CH02319 88098f1da7fba005310e91c445a0eb94 418 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 6 416 42.787 T 12-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 AMJ96_CH02319 88098f1da7fba005310e91c445a0eb94 418 Pfam PF00579 tRNA synthetases class I (W and Y) 34 327 1.1E-72 T 12-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH02319 88098f1da7fba005310e91c445a0eb94 418 Gene3D G3DSA:1.10.240.10 229 332 2.5E-31 T 12-10-2018 AMJ96_CH02319 88098f1da7fba005310e91c445a0eb94 418 SUPERFAMILY SSF52374 7 325 4.13E-100 T 12-10-2018 AMJ96_CH02319 88098f1da7fba005310e91c445a0eb94 418 SUPERFAMILY SSF55174 317 415 8.24E-18 T 12-10-2018 AMJ96_CH02319 88098f1da7fba005310e91c445a0eb94 418 Gene3D G3DSA:3.10.290.10 333 403 1.3E-17 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMJ96_CH02475 e60ba7317edd73a87f99d18b0c1e40ce 440 Pfam PF00672 HAMP domain 182 231 1.1E-6 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH02475 e60ba7317edd73a87f99d18b0c1e40ce 440 SMART SM00387 333 440 1.4E-24 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH02475 e60ba7317edd73a87f99d18b0c1e40ce 440 Gene3D G3DSA:1.10.287.130 179 287 3.0E-16 T 12-10-2018 AMJ96_CH02475 e60ba7317edd73a87f99d18b0c1e40ce 440 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 382 5.2E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02475 e60ba7317edd73a87f99d18b0c1e40ce 440 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 421 5.2E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02475 e60ba7317edd73a87f99d18b0c1e40ce 440 SUPERFAMILY SSF55874 299 439 1.07E-28 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02475 e60ba7317edd73a87f99d18b0c1e40ce 440 SMART SM00304 182 234 1.4E-5 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH02475 e60ba7317edd73a87f99d18b0c1e40ce 440 SMART SM00388 235 293 3.8E-5 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH02475 e60ba7317edd73a87f99d18b0c1e40ce 440 Gene3D G3DSA:3.30.565.10 294 440 7.4E-27 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02475 e60ba7317edd73a87f99d18b0c1e40ce 440 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 336 438 4.2E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH02475 e60ba7317edd73a87f99d18b0c1e40ce 440 SUPERFAMILY SSF47384 219 290 7.85E-10 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH03014 4b7417ca9753c222886532b2c960f7ea 471 Gene3D G3DSA:3.90.190.20 316 467 4.9E-50 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMJ96_CH03014 4b7417ca9753c222886532b2c960f7ea 471 Gene3D G3DSA:3.40.1190.10 96 315 7.6E-77 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMJ96_CH03014 4b7417ca9753c222886532b2c960f7ea 471 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 10 458 3.2E-160 T 12-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH03014 4b7417ca9753c222886532b2c960f7ea 471 SUPERFAMILY SSF53244 317 462 1.14E-46 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMJ96_CH03014 4b7417ca9753c222886532b2c960f7ea 471 SUPERFAMILY SSF53623 93 316 4.97E-70 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMJ96_CH03014 4b7417ca9753c222886532b2c960f7ea 471 SUPERFAMILY SSF51984 10 94 1.01E-27 T 12-10-2018 AMJ96_CH03014 4b7417ca9753c222886532b2c960f7ea 471 Pfam PF01225 Mur ligase family, catalytic domain 10 106 2.3E-28 T 12-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AMJ96_CH03014 4b7417ca9753c222886532b2c960f7ea 471 Pfam PF08245 Mur ligase middle domain 112 298 4.9E-29 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMJ96_CH03014 4b7417ca9753c222886532b2c960f7ea 471 Gene3D G3DSA:3.40.50.720 9 95 6.0E-31 T 12-10-2018 AMJ96_CH03014 4b7417ca9753c222886532b2c960f7ea 471 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 7 465 42.491 T 12-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH03014 4b7417ca9753c222886532b2c960f7ea 471 Pfam PF02875 Mur ligase family, glutamate ligase domain 318 403 1.6E-19 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AMJ96_CH01465 1c9b458beeb6b29f9178169f1f610fb0 297 Gene3D G3DSA:3.60.15.10 6 297 1.8E-71 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH01465 1c9b458beeb6b29f9178169f1f610fb0 297 SUPERFAMILY SSF56281 61 296 1.57E-40 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH01465 1c9b458beeb6b29f9178169f1f610fb0 297 Pfam PF00753 Metallo-beta-lactamase superfamily 62 276 2.3E-25 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH01465 1c9b458beeb6b29f9178169f1f610fb0 297 SMART SM00849 62 276 2.9E-17 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_PC00230 80245351218faf6c69c48d2ce71e11f5 246 Pfam PF00005 ABC transporter 17 168 2.4E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00230 80245351218faf6c69c48d2ce71e11f5 246 SMART SM00382 26 216 2.0E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00230 80245351218faf6c69c48d2ce71e11f5 246 PIRSF PIRSF039085 1 244 4.7E-98 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMJ96_PC00230 80245351218faf6c69c48d2ce71e11f5 246 SUPERFAMILY SSF52540 1 238 6.88E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00230 80245351218faf6c69c48d2ce71e11f5 246 Gene3D G3DSA:3.40.50.300 1 246 7.2E-72 T 12-10-2018 AMJ96_PB00223 c3268f11249dba60a0acb92ee3070f22 280 SMART SM00062 25 273 2.9E-51 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PB00223 c3268f11249dba60a0acb92ee3070f22 280 SUPERFAMILY SSF53850 5 273 1.09E-50 T 12-10-2018 AMJ96_PB00223 c3268f11249dba60a0acb92ee3070f22 280 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 26 271 4.6E-53 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PB00223 c3268f11249dba60a0acb92ee3070f22 280 Gene3D G3DSA:3.40.190.10 111 229 2.7E-73 T 12-10-2018 AMJ96_PB00223 c3268f11249dba60a0acb92ee3070f22 280 Gene3D G3DSA:3.40.190.10 28 270 2.7E-73 T 12-10-2018 AMJ96_PD00490 490a1adde270efda3e51a471e06ff338 201 Pfam PF16867 Dimethlysulfonioproprionate lyase 28 191 2.0E-60 T 12-10-2018 IPR031723 Dimethlysulfonioproprionate lyase DddL GO:0047869 KEGG: 00920+4.4.1.3|MetaCyc: PWY-6046|MetaCyc: PWY-6049 AMJ96_PD00490 490a1adde270efda3e51a471e06ff338 201 SUPERFAMILY SSF51182 106 196 6.58E-6 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_PD00490 490a1adde270efda3e51a471e06ff338 201 Gene3D G3DSA:2.60.120.10 15 200 1.8E-48 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH02508 3a9c94aa9228335a247fcfbb617add63 127 Pfam PF01219 Prokaryotic diacylglycerol kinase 20 119 3.2E-20 T 12-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 AMJ96_CH02508 3a9c94aa9228335a247fcfbb617add63 127 Gene3D G3DSA:1.10.3830.10 6 124 3.1E-26 T 12-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 AMJ96_PD00602 9a1ff3c70a4beb4c1df3a2cf87d8e4b2 281 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 43 60 - T 12-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AMJ96_PD00602 9a1ff3c70a4beb4c1df3a2cf87d8e4b2 281 SUPERFAMILY SSF51430 16 273 6.55E-74 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_PD00602 9a1ff3c70a4beb4c1df3a2cf87d8e4b2 281 Pfam PF00248 Aldo/keto reductase family 30 264 5.0E-44 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_PD00602 9a1ff3c70a4beb4c1df3a2cf87d8e4b2 281 PIRSF PIRSF000097 7 280 2.2E-56 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_PD00602 9a1ff3c70a4beb4c1df3a2cf87d8e4b2 281 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 128 145 - T 12-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AMJ96_PD00602 9a1ff3c70a4beb4c1df3a2cf87d8e4b2 281 PRINTS PR00069 Aldo-keto reductase signature 128 145 1.1E-40 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_PD00602 9a1ff3c70a4beb4c1df3a2cf87d8e4b2 281 PRINTS PR00069 Aldo-keto reductase signature 200 224 1.1E-40 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_PD00602 9a1ff3c70a4beb4c1df3a2cf87d8e4b2 281 PRINTS PR00069 Aldo-keto reductase signature 39 63 1.1E-40 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_PD00602 9a1ff3c70a4beb4c1df3a2cf87d8e4b2 281 PRINTS PR00069 Aldo-keto reductase signature 95 113 1.1E-40 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_PD00602 9a1ff3c70a4beb4c1df3a2cf87d8e4b2 281 PRINTS PR00069 Aldo-keto reductase signature 163 192 1.1E-40 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_PD00602 9a1ff3c70a4beb4c1df3a2cf87d8e4b2 281 Gene3D G3DSA:3.20.20.100 6 277 1.9E-81 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_PD00002 ef1c56593b18fddbe505d3d67030c837 311 SUPERFAMILY SSF52374 1 279 1.56E-104 T 12-10-2018 AMJ96_PD00002 ef1c56593b18fddbe505d3d67030c837 311 Pfam PF02569 Pantoate-beta-alanine ligase 3 277 2.0E-101 T 12-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AMJ96_PD00002 ef1c56593b18fddbe505d3d67030c837 311 Gene3D G3DSA:3.40.50.620 2 177 4.4E-79 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_PD00002 ef1c56593b18fddbe505d3d67030c837 311 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 279 2.2E-97 T 12-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AMJ96_PD00002 ef1c56593b18fddbe505d3d67030c837 311 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 27 83 8.1E-8 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMJ96_PD00002 ef1c56593b18fddbe505d3d67030c837 311 Hamap MF_00158 Pantothenate synthetase [panC]. 2 279 39.89 T 12-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AMJ96_PD00002 ef1c56593b18fddbe505d3d67030c837 311 Gene3D G3DSA:3.30.1300.10 178 277 3.3E-30 T 12-10-2018 AMJ96_PA00099 c96e688a9ad6a82bdf9e080c55e262e9 323 SUPERFAMILY SSF52540 3 251 1.67E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00099 c96e688a9ad6a82bdf9e080c55e262e9 323 SMART SM00382 32 232 6.5E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00099 c96e688a9ad6a82bdf9e080c55e262e9 323 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 234 298 7.4E-16 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PA00099 c96e688a9ad6a82bdf9e080c55e262e9 323 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 232 318 1.3E-24 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PA00099 c96e688a9ad6a82bdf9e080c55e262e9 323 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PA00099 c96e688a9ad6a82bdf9e080c55e262e9 323 Gene3D G3DSA:3.40.50.300 1 320 6.6E-93 T 12-10-2018 AMJ96_PA00099 c96e688a9ad6a82bdf9e080c55e262e9 323 Pfam PF00005 ABC transporter 23 182 4.6E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03811 320e577f48636b2885dada0cf530a962 1573 Pfam PF00310 Glutamine amidotransferases class-II 46 470 9.7E-188 T 12-10-2018 IPR017932 Glutamine amidotransferase type 2 domain AMJ96_CH03811 320e577f48636b2885dada0cf530a962 1573 Gene3D G3DSA:2.160.20.60 1272 1573 3.4E-111 T 12-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 AMJ96_CH03811 320e577f48636b2885dada0cf530a962 1573 Gene3D G3DSA:3.20.20.70 524 1237 0.0 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH03811 320e577f48636b2885dada0cf530a962 1573 Pfam PF01493 GXGXG motif 1301 1486 9.0E-83 T 12-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 AMJ96_CH03811 320e577f48636b2885dada0cf530a962 1573 Pfam PF04898 Glutamate synthase central domain 498 785 1.6E-118 T 12-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 AMJ96_CH03811 320e577f48636b2885dada0cf530a962 1573 Gene3D G3DSA:3.60.20.10 46 587 0.0 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMJ96_CH03811 320e577f48636b2885dada0cf530a962 1573 SUPERFAMILY SSF56235 46 473 1.63E-157 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMJ96_CH03811 320e577f48636b2885dada0cf530a962 1573 SUPERFAMILY SSF51395 492 1263 6.11E-267 T 12-10-2018 AMJ96_CH03811 320e577f48636b2885dada0cf530a962 1573 Pfam PF01645 Conserved region in glutamate synthase 848 1220 4.7E-155 T 12-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 AMJ96_CH03811 320e577f48636b2885dada0cf530a962 1573 Gene3D G3DSA:3.20.20.70 475 844 0.0 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH03811 320e577f48636b2885dada0cf530a962 1573 SUPERFAMILY SSF69336 1269 1563 7.19E-94 T 12-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 AMJ96_CH02404 039854710947151d447297af7053934a 127 Pfam PF01627 Hpt domain 47 102 4.6E-8 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMJ96_CH02404 039854710947151d447297af7053934a 127 SUPERFAMILY SSF47226 28 124 6.02E-17 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMJ96_CH02404 039854710947151d447297af7053934a 127 Gene3D G3DSA:1.20.120.160 23 124 5.4E-19 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMJ96_PA00085 56bc1564063f6aedd197cf6a411e3a47 255 SUPERFAMILY SSF51735 5 250 4.53E-62 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PA00085 56bc1564063f6aedd197cf6a411e3a47 255 Gene3D G3DSA:3.40.50.720 1 254 1.7E-72 T 12-10-2018 AMJ96_PA00085 56bc1564063f6aedd197cf6a411e3a47 255 Pfam PF00106 short chain dehydrogenase 9 202 3.2E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00085 56bc1564063f6aedd197cf6a411e3a47 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 196 8.8E-4 T 12-10-2018 AMJ96_PA00085 56bc1564063f6aedd197cf6a411e3a47 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 4.4E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00085 56bc1564063f6aedd197cf6a411e3a47 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 4.4E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00085 56bc1564063f6aedd197cf6a411e3a47 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 4.4E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00085 56bc1564063f6aedd197cf6a411e3a47 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 4.4E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00085 56bc1564063f6aedd197cf6a411e3a47 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.4E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00085 56bc1564063f6aedd197cf6a411e3a47 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 4.4E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00085 56bc1564063f6aedd197cf6a411e3a47 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 4.6E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00085 56bc1564063f6aedd197cf6a411e3a47 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 4.6E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00085 56bc1564063f6aedd197cf6a411e3a47 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 4.6E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00085 56bc1564063f6aedd197cf6a411e3a47 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH03921 780ad3cb2e54a31d23cca4686b2f376f 324 Pfam PF00753 Metallo-beta-lactamase superfamily 97 300 2.7E-23 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH03921 780ad3cb2e54a31d23cca4686b2f376f 324 SMART SM00849 95 300 9.9E-21 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH03921 780ad3cb2e54a31d23cca4686b2f376f 324 SUPERFAMILY SSF56281 39 308 6.16E-42 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH03921 780ad3cb2e54a31d23cca4686b2f376f 324 Gene3D G3DSA:3.60.15.10 39 323 1.6E-78 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH04304 934ac62aa92264f4f932f918c1c5ec68 470 Pfam PF07063 Domain of unknown function (DUF1338) 11 412 1.5E-118 T 12-10-2018 IPR009770 Domain of unknown function DUF1338 AMJ96_CH04304 934ac62aa92264f4f932f918c1c5ec68 470 Gene3D G3DSA:3.10.180.80 3 449 1.3E-192 T 12-10-2018 AMJ96_CH04304 934ac62aa92264f4f932f918c1c5ec68 470 SMART SM01150 12 412 6.0E-232 T 12-10-2018 IPR009770 Domain of unknown function DUF1338 AMJ96_CH04119 1fb3f40195a338ccefa4bfecb457ff18 475 SUPERFAMILY SSF47917 357 472 4.71E-54 T 12-10-2018 AMJ96_CH04119 1fb3f40195a338ccefa4bfecb457ff18 475 SUPERFAMILY SSF52540 82 360 5.19E-91 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04119 1fb3f40195a338ccefa4bfecb457ff18 475 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 9 472 2.8E-252 T 12-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 AMJ96_CH04119 1fb3f40195a338ccefa4bfecb457ff18 475 SUPERFAMILY SSF50615 6 80 1.44E-25 T 12-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_CH04119 1fb3f40195a338ccefa4bfecb457ff18 475 Hamap MF_01347 ATP synthase subunit beta [atpB]. 7 472 57.487 T 12-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 AMJ96_CH04119 1fb3f40195a338ccefa4bfecb457ff18 475 Gene3D G3DSA:3.40.50.300 81 356 1.5E-118 T 12-10-2018 AMJ96_CH04119 1fb3f40195a338ccefa4bfecb457ff18 475 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 12 78 1.7E-21 T 12-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_CH04119 1fb3f40195a338ccefa4bfecb457ff18 475 Gene3D G3DSA:1.10.1140.10 357 475 6.0E-58 T 12-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_CH04119 1fb3f40195a338ccefa4bfecb457ff18 475 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 345 354 - T 12-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_CH04119 1fb3f40195a338ccefa4bfecb457ff18 475 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 135 354 1.3E-63 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_CH04119 1fb3f40195a338ccefa4bfecb457ff18 475 PIRSF PIRSF039072 1 475 1.2E-282 T 12-10-2018 AMJ96_CH04119 1fb3f40195a338ccefa4bfecb457ff18 475 SMART SM00382 147 331 7.4E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04119 1fb3f40195a338ccefa4bfecb457ff18 475 Gene3D G3DSA:2.40.10.170 1 80 4.0E-34 T 12-10-2018 AMJ96_PB00031 987237580f5648320bdeda3b67d326ab 246 SUPERFAMILY SSF47413 112 194 7.32E-20 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PB00031 987237580f5648320bdeda3b67d326ab 246 Pfam PF01381 Helix-turn-helix 127 179 9.5E-9 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_PB00031 987237580f5648320bdeda3b67d326ab 246 Gene3D G3DSA:1.10.260.40 117 184 5.2E-13 T 12-10-2018 AMJ96_PB00031 987237580f5648320bdeda3b67d326ab 246 SMART SM00530 126 181 1.5E-9 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH03221 1e764f6a266074e452c2650e4abf0a6b 169 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 154 8.3E-15 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03221 1e764f6a266074e452c2650e4abf0a6b 169 SUPERFAMILY SSF88659 105 158 1.55E-9 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_CH03221 1e764f6a266074e452c2650e4abf0a6b 169 SUPERFAMILY SSF88946 17 81 1.92E-10 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03221 1e764f6a266074e452c2650e4abf0a6b 169 Gene3D G3DSA:1.10.10.10 103 161 1.1E-10 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03221 1e764f6a266074e452c2650e4abf0a6b 169 Gene3D G3DSA:1.10.1740.10 2 72 7.8E-15 T 12-10-2018 AMJ96_CH03221 1e764f6a266074e452c2650e4abf0a6b 169 Pfam PF08281 Sigma-70, region 4 106 156 1.7E-12 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_CH03221 1e764f6a266074e452c2650e4abf0a6b 169 Pfam PF04542 Sigma-70 region 2 17 79 1.4E-8 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_PA00129 9dc6292d66d0d03446a064344297fedc 287 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 204 279 3.6E-10 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PA00129 9dc6292d66d0d03446a064344297fedc 287 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 109 192 1.1E-11 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PA00129 9dc6292d66d0d03446a064344297fedc 287 PRINTS PR00605 Class IC cytochrome C signature 258 280 2.4E-7 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 AMJ96_PA00129 9dc6292d66d0d03446a064344297fedc 287 PRINTS PR00605 Class IC cytochrome C signature 214 225 2.4E-7 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 AMJ96_PA00129 9dc6292d66d0d03446a064344297fedc 287 PIRSF PIRSF000006 1 287 1.8E-112 T 12-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III AMJ96_PA00129 9dc6292d66d0d03446a064344297fedc 287 Gene3D G3DSA:1.10.760.10 83 283 5.4E-61 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_PA00129 9dc6292d66d0d03446a064344297fedc 287 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 11 57 5.0E-26 T 12-10-2018 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal AMJ96_PA00129 9dc6292d66d0d03446a064344297fedc 287 Gene3D G3DSA:1.10.760.10 173 260 5.4E-61 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_PA00129 9dc6292d66d0d03446a064344297fedc 287 Gene3D G3DSA:1.20.58.1490 2 68 2.3E-21 T 12-10-2018 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily AMJ96_PA00129 9dc6292d66d0d03446a064344297fedc 287 SUPERFAMILY SSF46626 198 285 2.84E-24 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_PA00129 9dc6292d66d0d03446a064344297fedc 287 SUPERFAMILY SSF46626 30 201 5.4E-27 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_PA00129 9dc6292d66d0d03446a064344297fedc 287 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 9 286 2.1E-102 T 12-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III AMJ96_CH01742 59abc2539a8fe2fba859f4d1d1bc4394 336 Gene3D G3DSA:3.30.1360.10 19 225 5.0E-86 T 12-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01742 59abc2539a8fe2fba859f4d1d1bc4394 336 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 25 316 1.8E-119 T 12-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01742 59abc2539a8fe2fba859f4d1d1bc4394 336 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 6 316 36.418 T 12-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01742 59abc2539a8fe2fba859f4d1d1bc4394 336 Gene3D G3DSA:1.10.150.20 244 328 6.5E-37 T 12-10-2018 AMJ96_CH01742 59abc2539a8fe2fba859f4d1d1bc4394 336 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 256 327 4.0E-36 T 12-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01742 59abc2539a8fe2fba859f4d1d1bc4394 336 SUPERFAMILY SSF47789 249 325 1.24E-26 T 12-10-2018 AMJ96_CH01742 59abc2539a8fe2fba859f4d1d1bc4394 336 Gene3D G3DSA:2.170.120.12 54 174 5.0E-86 T 12-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01742 59abc2539a8fe2fba859f4d1d1bc4394 336 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 30 225 1.9E-22 T 12-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01742 59abc2539a8fe2fba859f4d1d1bc4394 336 SUPERFAMILY SSF55257 6 230 2.04E-30 T 12-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01742 59abc2539a8fe2fba859f4d1d1bc4394 336 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 60 156 3.7E-25 T 12-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01742 59abc2539a8fe2fba859f4d1d1bc4394 336 SMART SM00662 24 231 1.2E-102 T 12-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01742 59abc2539a8fe2fba859f4d1d1bc4394 336 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 250 307 3.9E-25 T 12-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01742 59abc2539a8fe2fba859f4d1d1bc4394 336 SUPERFAMILY SSF56553 54 175 1.12E-44 T 12-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01395 071c79c7a31d170215bc075358f08b5c 379 Pfam PF00534 Glycosyl transferases group 1 187 346 4.7E-32 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 AMJ96_CH01395 071c79c7a31d170215bc075358f08b5c 379 SUPERFAMILY SSF53756 29 368 1.84E-65 T 12-10-2018 AMJ96_CH01395 071c79c7a31d170215bc075358f08b5c 379 Gene3D G3DSA:3.40.50.2000 179 352 1.2E-53 T 12-10-2018 AMJ96_CH01395 071c79c7a31d170215bc075358f08b5c 379 Pfam PF13439 Glycosyltransferase Family 4 45 179 4.5E-9 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMJ96_CH01395 071c79c7a31d170215bc075358f08b5c 379 Gene3D G3DSA:3.40.50.2000 31 362 1.2E-53 T 12-10-2018 AMJ96_CH00423 3c8d507e6958b7ccc418bb8d85314bfc 519 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 396 415 - T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMJ96_CH00423 3c8d507e6958b7ccc418bb8d85314bfc 519 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 7 50 6.8E-17 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMJ96_CH00423 3c8d507e6958b7ccc418bb8d85314bfc 519 Gene3D G3DSA:1.10.10.1330 157 278 1.2E-21 T 12-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily AMJ96_CH00423 3c8d507e6958b7ccc418bb8d85314bfc 519 Pfam PF04552 Sigma-54, DNA binding domain 349 508 1.3E-69 T 12-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding AMJ96_CH00423 3c8d507e6958b7ccc418bb8d85314bfc 519 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 11 507 1.8E-126 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMJ96_CH00423 3c8d507e6958b7ccc418bb8d85314bfc 519 Pfam PF04963 Sigma-54 factor, core binding domain 151 337 5.3E-50 T 12-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 AMJ96_CH00423 3c8d507e6958b7ccc418bb8d85314bfc 519 Gene3D G3DSA:1.10.10.60 449 507 4.1E-20 T 12-10-2018 AMJ96_CH00423 3c8d507e6958b7ccc418bb8d85314bfc 519 PRINTS PR00045 Sigma-54 factor signature 223 240 2.2E-32 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMJ96_CH00423 3c8d507e6958b7ccc418bb8d85314bfc 519 PRINTS PR00045 Sigma-54 factor signature 483 501 2.2E-32 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMJ96_CH00423 3c8d507e6958b7ccc418bb8d85314bfc 519 PRINTS PR00045 Sigma-54 factor signature 408 420 2.2E-32 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMJ96_CH00423 3c8d507e6958b7ccc418bb8d85314bfc 519 PRINTS PR00045 Sigma-54 factor signature 424 435 2.2E-32 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMJ96_CH00423 3c8d507e6958b7ccc418bb8d85314bfc 519 PIRSF PIRSF000774 1 510 6.9E-140 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMJ96_CH00423 3c8d507e6958b7ccc418bb8d85314bfc 519 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 488 495 - T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 SUPERFAMILY SSF54980 406 484 5.04E-25 T 12-10-2018 IPR035647 EF-G domain III/V-like AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 Gene3D G3DSA:3.30.230.10 488 691 4.4E-88 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 Pfam PF03764 Elongation factor G, domain IV 483 601 3.1E-45 T 12-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 Gene3D G3DSA:3.40.50.300 1 291 2.1E-113 T 12-10-2018 AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 SMART SM00838 604 691 1.2E-51 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 SMART SM00889 484 602 1.1E-67 T 12-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 SUPERFAMILY SSF52540 5 286 4.67E-106 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 185 1.2E-36 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 SUPERFAMILY SSF50447 269 408 8.95E-36 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 Pfam PF03144 Elongation factor Tu domain 2 328 395 4.3E-16 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 Hamap MF_00054_B Elongation factor G [fusA]. 6 695 111.773 T 12-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 Pfam PF14492 Elongation Factor G, domain II 408 481 1.3E-34 T 12-10-2018 AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 Gene3D G3DSA:2.40.30.10 292 404 2.8E-43 T 12-10-2018 AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 694 0.0 T 12-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 SUPERFAMILY SSF54980 607 693 1.39E-28 T 12-10-2018 IPR035647 EF-G domain III/V-like AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 Pfam PF00009 Elongation factor Tu GTP binding domain 9 286 1.9E-67 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 Gene3D G3DSA:3.30.70.870 409 487 9.6E-33 T 12-10-2018 AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.8E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 PRINTS PR00315 GTP-binding elongation factor signature 135 144 4.8E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 PRINTS PR00315 GTP-binding elongation factor signature 99 110 4.8E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 PRINTS PR00315 GTP-binding elongation factor signature 83 93 4.8E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 PRINTS PR00315 GTP-binding elongation factor signature 12 25 4.8E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 Gene3D G3DSA:3.30.70.240 608 678 4.4E-88 T 12-10-2018 AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 Pfam PF00679 Elongation factor G C-terminus 604 690 6.4E-30 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like AMJ96_CH01712 f6a4ac8897df7d77fafd19e794e080ac 699 SUPERFAMILY SSF54211 483 602 3.03E-41 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_CH00721 754ae08a95102bb482823e2319101465 436 Gene3D G3DSA:2.60.98.20 156 319 6.7E-13 T 12-10-2018 IPR037058 Flagellar hook protein FlgE superfamily AMJ96_CH00721 754ae08a95102bb482823e2319101465 436 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 12-10-2018 IPR019776 Flagellar basal body rod protein, conserved site AMJ96_CH00721 754ae08a95102bb482823e2319101465 436 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 6 417 1.5E-92 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G AMJ96_CH00721 754ae08a95102bb482823e2319101465 436 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 362 434 1.4E-18 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AMJ96_CH00721 754ae08a95102bb482823e2319101465 436 Pfam PF00460 Flagella basal body rod protein 7 37 1.2E-12 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AMJ96_CH00721 754ae08a95102bb482823e2319101465 436 Pfam PF07559 Flagellar basal body protein FlaE 192 308 5.9E-9 T 12-10-2018 IPR011491 Flagellar hook protein FlgE AMJ96_CH00721 754ae08a95102bb482823e2319101465 436 SUPERFAMILY SSF117143 81 396 1.09E-62 T 12-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like AMJ96_CH04377 0f1f7187e2ca013a94e993abd74d7f96 205 Pfam PF02527 rRNA small subunit methyltransferase G 13 190 2.9E-33 T 12-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AMJ96_CH04377 0f1f7187e2ca013a94e993abd74d7f96 205 Gene3D G3DSA:3.40.50.150 1 201 2.6E-42 T 12-10-2018 AMJ96_CH04377 0f1f7187e2ca013a94e993abd74d7f96 205 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 17 194 5.3E-31 T 12-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AMJ96_CH04377 0f1f7187e2ca013a94e993abd74d7f96 205 SUPERFAMILY SSF53335 4 180 1.37E-22 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH04377 0f1f7187e2ca013a94e993abd74d7f96 205 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 5 196 22.846 T 12-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AMJ96_CH04377 0f1f7187e2ca013a94e993abd74d7f96 205 PIRSF PIRSF003078 1 199 1.8E-39 T 12-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 Gene3D G3DSA:1.10.620.20 24 80 2.8E-8 T 12-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 Gene3D G3DSA:1.10.620.20 81 134 1.5E-7 T 12-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 250 834 4.4E-185 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 295 803 1.4E-85 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 SUPERFAMILY SSF81653 327 424 2.22E-26 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 SMART SM00746 34 72 2.2E-9 T 12-10-2018 IPR011017 TRASH domain AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 SMART SM00746 80 118 2.9E-8 T 12-10-2018 IPR011017 TRASH domain AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 Pfam PF00122 E1-E2 ATPase 324 504 1.7E-53 T 12-10-2018 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 Pfam PF00702 haloacid dehalogenase-like hydrolase 522 739 1.0E-43 T 12-10-2018 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 SUPERFAMILY SSF81665 291 791 9.42E-13 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 Gene3D G3DSA:3.40.50.1000 507 777 9.9E-90 T 12-10-2018 IPR023214 HAD superfamily AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 SUPERFAMILY SSF47240 81 122 1.97E-8 T 12-10-2018 IPR009078 Ferritin-like superfamily AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 528 534 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 SUPERFAMILY SSF56784 524 832 1.65E-53 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 PRINTS PR00943 Copper-transporting ATPase signature 702 719 9.9E-17 T 12-10-2018 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 PRINTS PR00943 Copper-transporting ATPase signature 313 331 9.9E-17 T 12-10-2018 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 PRINTS PR00943 Copper-transporting ATPase signature 447 461 9.9E-17 T 12-10-2018 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 PRINTS PR00943 Copper-transporting ATPase signature 509 524 9.9E-17 T 12-10-2018 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 PRINTS PR00943 Copper-transporting ATPase signature 235 254 9.9E-17 T 12-10-2018 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 PRINTS PR00943 Copper-transporting ATPase signature 293 312 9.9E-17 T 12-10-2018 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 232 835 1.2E-178 T 12-10-2018 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 Gene3D G3DSA:3.40.1110.10 537 657 9.9E-90 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 Pfam PF04945 YHS domain 79 123 5.7E-14 T 12-10-2018 IPR007029 YHS domain AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 Pfam PF04945 YHS domain 32 78 4.5E-17 T 12-10-2018 IPR007029 YHS domain AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 725 744 6.9E-25 T 12-10-2018 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 672 682 6.9E-25 T 12-10-2018 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 748 760 6.9E-25 T 12-10-2018 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 374 388 6.9E-25 T 12-10-2018 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 526 540 6.9E-25 T 12-10-2018 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 650 661 6.9E-25 T 12-10-2018 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 Gene3D G3DSA:2.70.150.20 317 429 3.4E-42 T 12-10-2018 AMJ96_PC00007 f1482149210bf33aa36df1d4afdff383 839 SUPERFAMILY SSF47240 32 75 2.6E-7 T 12-10-2018 IPR009078 Ferritin-like superfamily AMJ96_CH00691 71bd7b0b949a16d14a18e61701a4b506 346 Pfam PF14842 FliG N-terminal domain 16 109 2.8E-15 T 12-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain AMJ96_CH00691 71bd7b0b949a16d14a18e61701a4b506 346 Pfam PF14841 FliG middle domain 127 200 1.2E-20 T 12-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain AMJ96_CH00691 71bd7b0b949a16d14a18e61701a4b506 346 Gene3D G3DSA:1.10.220.30 206 343 3.4E-27 T 12-10-2018 AMJ96_CH00691 71bd7b0b949a16d14a18e61701a4b506 346 SUPERFAMILY SSF48029 19 107 5.75E-12 T 12-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical AMJ96_CH00691 71bd7b0b949a16d14a18e61701a4b506 346 PRINTS PR00954 Flagellar motor switch protein FliG signature 236 256 8.5E-46 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMJ96_CH00691 71bd7b0b949a16d14a18e61701a4b506 346 PRINTS PR00954 Flagellar motor switch protein FliG signature 258 278 8.5E-46 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMJ96_CH00691 71bd7b0b949a16d14a18e61701a4b506 346 PRINTS PR00954 Flagellar motor switch protein FliG signature 205 230 8.5E-46 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMJ96_CH00691 71bd7b0b949a16d14a18e61701a4b506 346 PRINTS PR00954 Flagellar motor switch protein FliG signature 16 32 8.5E-46 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMJ96_CH00691 71bd7b0b949a16d14a18e61701a4b506 346 PRINTS PR00954 Flagellar motor switch protein FliG signature 45 71 8.5E-46 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMJ96_CH00691 71bd7b0b949a16d14a18e61701a4b506 346 PRINTS PR00954 Flagellar motor switch protein FliG signature 282 308 8.5E-46 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMJ96_CH00691 71bd7b0b949a16d14a18e61701a4b506 346 PRINTS PR00954 Flagellar motor switch protein FliG signature 126 149 8.5E-46 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AMJ96_CH00691 71bd7b0b949a16d14a18e61701a4b506 346 Pfam PF01706 FliG C-terminal domain 228 335 1.7E-24 T 12-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal AMJ96_CH00691 71bd7b0b949a16d14a18e61701a4b506 346 Gene3D G3DSA:1.10.220.30 107 205 3.9E-19 T 12-10-2018 AMJ96_CH00691 71bd7b0b949a16d14a18e61701a4b506 346 SUPERFAMILY SSF48029 127 335 1.15E-46 T 12-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical AMJ96_CH00691 71bd7b0b949a16d14a18e61701a4b506 346 Gene3D G3DSA:1.10.220.30 10 94 1.1E-13 T 12-10-2018 AMJ96_CH03400 a6e9706c5ace08b0ca33a40e1b834193 1000 SUPERFAMILY SSF53448 7 224 7.69E-52 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03400 a6e9706c5ace08b0ca33a40e1b834193 1000 Pfam PF00535 Glycosyl transferase family 2 10 113 6.9E-26 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_CH03400 a6e9706c5ace08b0ca33a40e1b834193 1000 SUPERFAMILY SSF53335 549 699 2.23E-26 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH03400 a6e9706c5ace08b0ca33a40e1b834193 1000 Pfam PF01522 Polysaccharide deacetylase 823 956 2.0E-18 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMJ96_CH03400 a6e9706c5ace08b0ca33a40e1b834193 1000 Gene3D G3DSA:3.90.550.10 2 241 7.7E-55 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03400 a6e9706c5ace08b0ca33a40e1b834193 1000 Gene3D G3DSA:3.40.50.150 523 687 6.6E-36 T 12-10-2018 AMJ96_CH03400 a6e9706c5ace08b0ca33a40e1b834193 1000 SUPERFAMILY SSF88713 784 968 1.45E-29 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMJ96_CH03400 a6e9706c5ace08b0ca33a40e1b834193 1000 Pfam PF05401 Nodulation protein S (NodS) 531 669 2.2E-20 T 12-10-2018 IPR008715 SAM-dependent methyltransferase, NodS-related GO:0008757|GO:0009312|GO:0009877 AMJ96_CH03400 a6e9706c5ace08b0ca33a40e1b834193 1000 Gene3D G3DSA:3.20.20.370 761 992 4.9E-55 T 12-10-2018 AMJ96_CH00308 bfda4c8c9e9210c629e89d7a2e41aebc 132 Gene3D G3DSA:3.10.180.10 1 120 1.2E-24 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH00308 bfda4c8c9e9210c629e89d7a2e41aebc 132 SUPERFAMILY SSF54593 1 118 7.79E-17 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH03342 727c95139068c77fe2f412651fa0f810 252 SMART SM00421 182 239 0.0013 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH03342 727c95139068c77fe2f412651fa0f810 252 Gene3D G3DSA:1.10.10.10 189 244 1.1E-9 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03342 727c95139068c77fe2f412651fa0f810 252 Pfam PF00196 Bacterial regulatory proteins, luxR family 192 238 3.6E-6 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH03342 727c95139068c77fe2f412651fa0f810 252 SUPERFAMILY SSF46894 191 244 3.74E-9 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH03603 120634e0880febdb33e2cb2a22127067 586 Pfam PF02706 Chain length determinant protein 28 88 2.5E-6 T 12-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 AMJ96_CH03603 120634e0880febdb33e2cb2a22127067 586 Gene3D G3DSA:3.40.50.300 331 585 2.6E-35 T 12-10-2018 AMJ96_CH03603 120634e0880febdb33e2cb2a22127067 586 SUPERFAMILY SSF52540 410 581 2.62E-22 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03603 120634e0880febdb33e2cb2a22127067 586 Pfam PF13807 G-rich domain on putative tyrosine kinase 264 338 6.2E-7 T 12-10-2018 IPR032807 Tyrosine kinase, G-rich domain AMJ96_CH03603 120634e0880febdb33e2cb2a22127067 586 Pfam PF06564 Cellulose biosynthesis protein BcsQ 411 547 8.8E-7 T 12-10-2018 IPR017746 Cellulose synthase operon protein BcsQ AMJ96_CH00653 18fb919a73ae1219b8f3095cadc624df 381 Gene3D G3DSA:2.160.20.10 9 283 3.4E-13 T 12-10-2018 IPR012334 Pectin lyase fold AMJ96_CH00653 18fb919a73ae1219b8f3095cadc624df 381 SUPERFAMILY SSF51126 18 316 6.01E-33 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor AMJ96_CH00653 18fb919a73ae1219b8f3095cadc624df 381 Pfam PF13229 Right handed beta helix region 20 120 1.6E-9 T 12-10-2018 IPR039448 Right handed beta helix domain AMJ96_CH00653 18fb919a73ae1219b8f3095cadc624df 381 SMART SM00710 189 210 130.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH00653 18fb919a73ae1219b8f3095cadc624df 381 SMART SM00710 159 187 6500.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH00653 18fb919a73ae1219b8f3095cadc624df 381 SMART SM00710 54 76 36.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH00653 18fb919a73ae1219b8f3095cadc624df 381 SMART SM00710 219 240 2700.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH00653 18fb919a73ae1219b8f3095cadc624df 381 SMART SM00710 32 53 8700.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH02239 09e0e92de37cb41b7aca6cf0f3c6077c 618 SUPERFAMILY SSF55073 422 612 1.05E-39 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02239 09e0e92de37cb41b7aca6cf0f3c6077c 618 Gene3D G3DSA:3.30.70.1230 421 616 9.7E-38 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02239 09e0e92de37cb41b7aca6cf0f3c6077c 618 SMART SM01080 33 329 3.7E-50 T 12-10-2018 IPR007890 CHASE2 AMJ96_CH02239 09e0e92de37cb41b7aca6cf0f3c6077c 618 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 425 572 1.2E-19 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH02239 09e0e92de37cb41b7aca6cf0f3c6077c 618 SMART SM00044 361 597 1.6E-6 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH02239 09e0e92de37cb41b7aca6cf0f3c6077c 618 Pfam PF05226 CHASE2 domain 22 311 4.9E-37 T 12-10-2018 IPR007890 CHASE2 AMJ96_CH03210 5a7cc9e97dcc4579b85b3b7952b3f706 207 Gene3D G3DSA:2.30.270.10 101 170 1.1E-26 T 12-10-2018 IPR023361 DUF1285, beta-roll domain superfamily AMJ96_CH03210 5a7cc9e97dcc4579b85b3b7952b3f706 207 Gene3D G3DSA:3.10.540.10 9 100 1.3E-33 T 12-10-2018 AMJ96_CH03210 5a7cc9e97dcc4579b85b3b7952b3f706 207 Pfam PF06938 Protein of unknown function (DUF1285) 49 194 1.4E-56 T 12-10-2018 IPR010707 Protein of unknown function DUF1285 AMJ96_CH03210 5a7cc9e97dcc4579b85b3b7952b3f706 207 PIRSF PIRSF029557 1 206 1.2E-99 T 12-10-2018 IPR010707 Protein of unknown function DUF1285 AMJ96_CH02376 73befd6396379aa734a59e374d29b53f 497 Pfam PF01935 Domain of unknown function DUF87 5 69 2.2E-9 T 12-10-2018 IPR002789 Helicase HerA, central domain AMJ96_CH02376 73befd6396379aa734a59e374d29b53f 497 SMART SM00382 17 277 4.5E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02376 73befd6396379aa734a59e374d29b53f 497 PIRSF PIRSF034081 1 497 6.7E-279 T 12-10-2018 IPR014588 ATPase, Atu1862 type, predicted AMJ96_CH02376 73befd6396379aa734a59e374d29b53f 497 SUPERFAMILY SSF52540 5 243 9.07E-27 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02376 73befd6396379aa734a59e374d29b53f 497 Gene3D G3DSA:3.40.50.300 18 238 5.2E-36 T 12-10-2018 AMJ96_CH01351 f1b2e93224355d719c0cf3c97c3749b3 300 SUPERFAMILY SSF103481 199 293 5.36E-8 T 12-10-2018 AMJ96_CH01351 f1b2e93224355d719c0cf3c97c3749b3 300 SUPERFAMILY SSF103481 52 152 8.63E-13 T 12-10-2018 AMJ96_CH01351 f1b2e93224355d719c0cf3c97c3749b3 300 Pfam PF00892 EamA-like transporter family 168 293 1.2E-8 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH01351 f1b2e93224355d719c0cf3c97c3749b3 300 Pfam PF00892 EamA-like transporter family 16 149 2.4E-10 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_PD00241 ebfb596af7a6166f1dcc2fff3cacf9cd 337 Gene3D G3DSA:3.10.450.240 206 336 3.0E-12 T 12-10-2018 AMJ96_PD00241 ebfb596af7a6166f1dcc2fff3cacf9cd 337 SUPERFAMILY SSF54427 208 332 2.37E-20 T 12-10-2018 IPR032710 NTF2-like domain superfamily AMJ96_PD00241 ebfb596af7a6166f1dcc2fff3cacf9cd 337 SMART SM00978 183 331 8.0E-34 T 12-10-2018 IPR007379 Tim44-like domain AMJ96_PD00241 ebfb596af7a6166f1dcc2fff3cacf9cd 337 Pfam PF04280 Tim44-like domain 208 330 5.6E-28 T 12-10-2018 IPR007379 Tim44-like domain AMJ96_PD00627 aed8f2dc4f54db93d0d2683fbb399516 192 SUPERFAMILY SSF46689 8 73 4.99E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00627 aed8f2dc4f54db93d0d2683fbb399516 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 55 1.4E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PD00627 aed8f2dc4f54db93d0d2683fbb399516 192 Gene3D G3DSA:1.10.357.10 6 185 4.3E-26 T 12-10-2018 AMJ96_CH01992 aee24e480436a822f0cfde8a1e5bd7fb 293 Gene3D G3DSA:3.40.140.80 140 286 2.2E-50 T 12-10-2018 AMJ96_CH01992 aee24e480436a822f0cfde8a1e5bd7fb 293 Pfam PF06230 Protein of unknown function (DUF1009) 68 281 1.3E-65 T 12-10-2018 IPR010415 Protein of unknown function DUF1009 KEGG: 00540+3.6.1.54 AMJ96_CH01992 aee24e480436a822f0cfde8a1e5bd7fb 293 Gene3D G3DSA:3.40.50.20 7 139 6.5E-33 T 12-10-2018 AMJ96_CH00578 d3ed3c6fcf7ec8c34ec704dafbb0f911 69 PRINTS PR00050 Cold shock protein signature 40 58 7.6E-14 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_CH00578 d3ed3c6fcf7ec8c34ec704dafbb0f911 69 PRINTS PR00050 Cold shock protein signature 4 19 7.6E-14 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_CH00578 d3ed3c6fcf7ec8c34ec704dafbb0f911 69 PRINTS PR00050 Cold shock protein signature 25 34 7.6E-14 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_CH00578 d3ed3c6fcf7ec8c34ec704dafbb0f911 69 Pfam PF00313 'Cold-shock' DNA-binding domain 3 66 1.3E-23 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_CH00578 d3ed3c6fcf7ec8c34ec704dafbb0f911 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 12-10-2018 IPR019844 Cold-shock conserved site AMJ96_CH00578 d3ed3c6fcf7ec8c34ec704dafbb0f911 69 PIRSF PIRSF002599 1 68 3.5E-21 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 AMJ96_CH00578 d3ed3c6fcf7ec8c34ec704dafbb0f911 69 Gene3D G3DSA:2.40.50.140 1 66 4.7E-24 T 12-10-2018 AMJ96_CH00578 d3ed3c6fcf7ec8c34ec704dafbb0f911 69 SMART SM00357 3 69 2.4E-23 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 AMJ96_CH00578 d3ed3c6fcf7ec8c34ec704dafbb0f911 69 SUPERFAMILY SSF50249 1 67 2.57E-21 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH04324 8cb07e8c27f131200b4d1fb79ca6d2a8 427 Pfam PF00171 Aldehyde dehydrogenase family 46 280 1.7E-15 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_CH04324 8cb07e8c27f131200b4d1fb79ca6d2a8 427 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 22 416 3.2E-129 T 12-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMJ96_CH04324 8cb07e8c27f131200b4d1fb79ca6d2a8 427 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 14 426 38.846 T 12-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMJ96_CH04324 8cb07e8c27f131200b4d1fb79ca6d2a8 427 Gene3D G3DSA:3.40.605.10 29 421 1.8E-152 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_CH04324 8cb07e8c27f131200b4d1fb79ca6d2a8 427 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 333 355 - T 12-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMJ96_CH04324 8cb07e8c27f131200b4d1fb79ca6d2a8 427 SUPERFAMILY SSF53720 15 426 4.97E-109 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_CH04324 8cb07e8c27f131200b4d1fb79ca6d2a8 427 Gene3D G3DSA:3.40.309.10 236 384 1.8E-152 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_CH04324 8cb07e8c27f131200b4d1fb79ca6d2a8 427 PIRSF PIRSF000151 9 427 1.1E-164 T 12-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 AMJ96_CH02051 15719501607a784935109c63e1eaf2f7 104 Pfam PF11011 Protein of unknown function (DUF2849) 4 90 7.7E-30 T 12-10-2018 IPR021270 Protein of unknown function DUF2849 AMJ96_PD00231 336cf7225608b2d51eb3b1a845a13765 347 Gene3D G3DSA:3.40.50.2300 80 313 6.4E-60 T 12-10-2018 AMJ96_PD00231 336cf7225608b2d51eb3b1a845a13765 347 Pfam PF13377 Periplasmic binding protein-like domain 174 314 2.4E-24 T 12-10-2018 AMJ96_PD00231 336cf7225608b2d51eb3b1a845a13765 347 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 48 2.3E-10 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00231 336cf7225608b2d51eb3b1a845a13765 347 SUPERFAMILY SSF53822 59 313 1.28E-45 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PD00231 336cf7225608b2d51eb3b1a845a13765 347 SUPERFAMILY SSF47413 3 59 1.34E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PD00231 336cf7225608b2d51eb3b1a845a13765 347 Gene3D G3DSA:1.10.260.40 2 58 2.4E-18 T 12-10-2018 AMJ96_PD00231 336cf7225608b2d51eb3b1a845a13765 347 Gene3D G3DSA:3.40.50.2300 166 295 6.4E-60 T 12-10-2018 AMJ96_PD00231 336cf7225608b2d51eb3b1a845a13765 347 SMART SM00354 1 71 2.5E-16 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH04028 756e657592d22a490c6b15c0475358c5 293 SUPERFAMILY SSF52374 9 291 5.63E-77 T 12-10-2018 AMJ96_CH04028 756e657592d22a490c6b15c0475358c5 293 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 15 26 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH04028 756e657592d22a490c6b15c0475358c5 293 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 12 271 2.0E-47 T 12-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 AMJ96_CH04028 756e657592d22a490c6b15c0475358c5 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 12 24 2.6E-15 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMJ96_CH04028 756e657592d22a490c6b15c0475358c5 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 26 37 2.6E-15 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMJ96_CH04028 756e657592d22a490c6b15c0475358c5 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 206 216 2.6E-15 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMJ96_CH04028 756e657592d22a490c6b15c0475358c5 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 222 230 2.6E-15 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMJ96_CH04028 756e657592d22a490c6b15c0475358c5 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 41 54 2.6E-15 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMJ96_CH04028 756e657592d22a490c6b15c0475358c5 293 Gene3D G3DSA:3.40.50.620 2 293 4.1E-77 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_PC00066 e2ddb91ccbd69ef8e6dbeaae3261f038 348 Gene3D G3DSA:1.20.200.30 1 348 1.1E-106 T 12-10-2018 AMJ96_PC00066 e2ddb91ccbd69ef8e6dbeaae3261f038 348 TIGRFAM TIGR02426 protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase 10 341 8.0E-112 T 12-10-2018 IPR012789 3-carboxy-cis,cis-muconate cycloisomerase GO:0019619|GO:0047472 KEGG: 00362+5.5.1.2 AMJ96_PC00066 e2ddb91ccbd69ef8e6dbeaae3261f038 348 SUPERFAMILY SSF48557 11 343 7.38E-61 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMJ96_PC00066 e2ddb91ccbd69ef8e6dbeaae3261f038 348 Pfam PF00206 Lyase 19 289 7.1E-20 T 12-10-2018 IPR022761 Fumarate lyase, N-terminal AMJ96_PC00066 e2ddb91ccbd69ef8e6dbeaae3261f038 348 PRINTS PR00149 Fumarate lyase superfamily signature 269 285 4.1E-13 T 12-10-2018 IPR000362 Fumarate lyase family AMJ96_PC00066 e2ddb91ccbd69ef8e6dbeaae3261f038 348 PRINTS PR00149 Fumarate lyase superfamily signature 147 165 4.1E-13 T 12-10-2018 IPR000362 Fumarate lyase family AMJ96_PC00066 e2ddb91ccbd69ef8e6dbeaae3261f038 348 PRINTS PR00149 Fumarate lyase superfamily signature 102 120 4.1E-13 T 12-10-2018 IPR000362 Fumarate lyase family AMJ96_PC00066 e2ddb91ccbd69ef8e6dbeaae3261f038 348 PRINTS PR00149 Fumarate lyase superfamily signature 228 255 4.1E-13 T 12-10-2018 IPR000362 Fumarate lyase family AMJ96_CH04314 5a89344cd62e581e4bc02a1dfd75a5fb 450 Gene3D G3DSA:1.20.1250.20 20 449 2.5E-88 T 12-10-2018 AMJ96_CH04314 5a89344cd62e581e4bc02a1dfd75a5fb 450 SUPERFAMILY SSF103473 16 443 7.98E-72 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH04314 5a89344cd62e581e4bc02a1dfd75a5fb 450 Pfam PF00083 Sugar (and other) transporter 31 446 9.0E-60 T 12-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMJ96_CH04314 5a89344cd62e581e4bc02a1dfd75a5fb 450 ProSitePatterns PS00217 Sugar transport proteins signature 2. 126 151 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMJ96_CH03721 2c3c2c137d77d891bf93f73ace8bea5a 299 Pfam PF00149 Calcineurin-like phosphoesterase 52 239 3.5E-9 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMJ96_CH03721 2c3c2c137d77d891bf93f73ace8bea5a 299 Gene3D G3DSA:3.60.21.10 50 269 6.2E-13 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like AMJ96_CH03721 2c3c2c137d77d891bf93f73ace8bea5a 299 SUPERFAMILY SSF56300 52 298 3.01E-32 T 12-10-2018 AMJ96_PA00005 1b61499ebcbfd63e2cc2de5a0dcfd9aa 399 Gene3D G3DSA:3.30.70.360 192 306 2.7E-137 T 12-10-2018 AMJ96_PA00005 1b61499ebcbfd63e2cc2de5a0dcfd9aa 399 SUPERFAMILY SSF55031 192 310 8.5E-31 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMJ96_PA00005 1b61499ebcbfd63e2cc2de5a0dcfd9aa 399 Pfam PF07687 Peptidase dimerisation domain 197 291 3.6E-9 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain AMJ96_PA00005 1b61499ebcbfd63e2cc2de5a0dcfd9aa 399 PIRSF PIRSF005962 10 398 5.6E-125 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 AMJ96_PA00005 1b61499ebcbfd63e2cc2de5a0dcfd9aa 399 Pfam PF01546 Peptidase family M20/M25/M40 84 391 5.0E-34 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 AMJ96_PA00005 1b61499ebcbfd63e2cc2de5a0dcfd9aa 399 Gene3D G3DSA:3.40.630.10 25 378 2.7E-137 T 12-10-2018 AMJ96_PA00005 1b61499ebcbfd63e2cc2de5a0dcfd9aa 399 SUPERFAMILY SSF53187 14 397 1.91E-88 T 12-10-2018 AMJ96_PA00005 1b61499ebcbfd63e2cc2de5a0dcfd9aa 399 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 25 380 2.6E-108 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 AMJ96_PA00004 fa04b28a040794e4b87b391edfbf2194 449 Gene3D G3DSA:3.20.20.30 1 443 6.4E-153 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_PA00004 fa04b28a040794e4b87b391edfbf2194 449 SUPERFAMILY SSF51679 3 429 9.55E-126 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_PA00004 fa04b28a040794e4b87b391edfbf2194 449 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 8 424 1.0E-148 T 12-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AMJ96_PA00004 fa04b28a040794e4b87b391edfbf2194 449 PIRSF PIRSF000337 1 439 8.3E-136 T 12-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AMJ96_PA00004 fa04b28a040794e4b87b391edfbf2194 449 Pfam PF00296 Luciferase-like monooxygenase 17 380 3.8E-61 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMJ96_PA00162 7e9c2f6cd6cca117326a1e48469cfc6c 303 SUPERFAMILY SSF161098 16 303 3.66E-60 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00162 7e9c2f6cd6cca117326a1e48469cfc6c 303 Gene3D G3DSA:1.10.3720.10 16 291 2.8E-52 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00162 7e9c2f6cd6cca117326a1e48469cfc6c 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 297 1.1E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00373 949d19df7e8607f35b51ee2627e8368a 1093 Pfam PF00128 Alpha amylase, catalytic domain 37 390 6.6E-73 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_PD00373 949d19df7e8607f35b51ee2627e8368a 1093 SMART SM00642 22 421 2.2E-103 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_PD00373 949d19df7e8607f35b51ee2627e8368a 1093 Gene3D G3DSA:3.90.1200.10 850 1091 1.4E-54 T 12-10-2018 AMJ96_PD00373 949d19df7e8607f35b51ee2627e8368a 1093 SUPERFAMILY SSF51011 469 550 6.32E-19 T 12-10-2018 AMJ96_PD00373 949d19df7e8607f35b51ee2627e8368a 1093 TIGRFAM TIGR02457 TreS_Cterm: putative maltokinase 565 1085 1.1E-153 T 12-10-2018 IPR012811 Trehalose synthase/probable maltokinase, C-terminal domain AMJ96_PD00373 949d19df7e8607f35b51ee2627e8368a 1093 Gene3D G3DSA:2.60.40.1180 469 559 1.3E-34 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta AMJ96_PD00373 949d19df7e8607f35b51ee2627e8368a 1093 Pfam PF16657 Maltogenic Amylase, C-terminal domain 469 546 5.6E-31 T 12-10-2018 IPR032091 Maltogenic Amylase, C-terminal AMJ96_PD00373 949d19df7e8607f35b51ee2627e8368a 1093 SUPERFAMILY SSF51445 25 469 1.59E-132 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_PD00373 949d19df7e8607f35b51ee2627e8368a 1093 Gene3D G3DSA:3.90.400.10 112 182 1.6E-217 T 12-10-2018 AMJ96_PD00373 949d19df7e8607f35b51ee2627e8368a 1093 SUPERFAMILY SSF56112 844 1087 1.28E-10 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily AMJ96_PD00373 949d19df7e8607f35b51ee2627e8368a 1093 TIGRFAM TIGR02456 treS_nterm: trehalose synthase 14 550 6.2E-285 T 12-10-2018 IPR012810 Trehalose synthase/alpha-amylase, N-terminal GO:0003824|GO:0005975 KEGG: 00500+5.4.99.16|MetaCyc: PWY-2622|MetaCyc: PWY-7900 AMJ96_PD00373 949d19df7e8607f35b51ee2627e8368a 1093 Gene3D G3DSA:3.20.20.80 14 464 1.6E-217 T 12-10-2018 AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 Gene3D G3DSA:3.30.70.240 388 481 4.6E-128 T 12-10-2018 AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 Gene3D G3DSA:2.40.30.10 198 298 1.4E-29 T 12-10-2018 AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 SMART SM00838 395 483 0.0056 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 SUPERFAMILY SSF54980 398 511 2.35E-26 T 12-10-2018 IPR035647 EF-G domain III/V-like AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 3 598 4.5E-278 T 12-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 Pfam PF00679 Elongation factor G C-terminus 395 479 7.0E-21 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 SUPERFAMILY SSF52540 3 199 1.45E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 Gene3D G3DSA:2.40.50.250 482 598 4.6E-128 T 12-10-2018 AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 Gene3D G3DSA:3.40.50.300 2 197 7.7E-64 T 12-10-2018 AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 Gene3D G3DSA:3.30.70.870 305 589 4.6E-128 T 12-10-2018 AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 PRINTS PR00315 GTP-binding elongation factor signature 49 57 9.8E-16 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 PRINTS PR00315 GTP-binding elongation factor signature 121 130 9.8E-16 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 PRINTS PR00315 GTP-binding elongation factor signature 85 96 9.8E-16 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 PRINTS PR00315 GTP-binding elongation factor signature 69 79 9.8E-16 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 PRINTS PR00315 GTP-binding elongation factor signature 5 18 9.8E-16 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 SUPERFAMILY SSF50447 149 297 5.41E-28 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 2 147 1.3E-24 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 SUPERFAMILY SSF54980 301 386 1.62E-13 T 12-10-2018 IPR035647 EF-G domain III/V-like AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 Pfam PF00009 Elongation factor Tu GTP binding domain 3 194 1.7E-58 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH04165 14fc0fc81bae1df2448e901d2fe27ad2 606 Pfam PF03144 Elongation factor Tu domain 2 217 288 3.8E-14 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMJ96_CH03701 8fee54a65cc80803833fbffff2e5da55 436 Gene3D G3DSA:2.120.10.30 168 436 9.9E-77 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMJ96_CH03701 8fee54a65cc80803833fbffff2e5da55 436 Pfam PF04052 TolB amino-terminal domain 30 132 5.2E-35 T 12-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 AMJ96_CH03701 8fee54a65cc80803833fbffff2e5da55 436 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 11 431 50.228 T 12-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 AMJ96_CH03701 8fee54a65cc80803833fbffff2e5da55 436 Pfam PF07676 WD40-like Beta Propeller Repeat 285 320 1.8E-9 T 12-10-2018 IPR011659 WD40-like Beta Propeller AMJ96_CH03701 8fee54a65cc80803833fbffff2e5da55 436 Pfam PF07676 WD40-like Beta Propeller Repeat 372 408 6.7E-7 T 12-10-2018 IPR011659 WD40-like Beta Propeller AMJ96_CH03701 8fee54a65cc80803833fbffff2e5da55 436 Pfam PF07676 WD40-like Beta Propeller Repeat 243 276 2.6E-6 T 12-10-2018 IPR011659 WD40-like Beta Propeller AMJ96_CH03701 8fee54a65cc80803833fbffff2e5da55 436 Pfam PF07676 WD40-like Beta Propeller Repeat 329 362 2.2E-4 T 12-10-2018 IPR011659 WD40-like Beta Propeller AMJ96_CH03701 8fee54a65cc80803833fbffff2e5da55 436 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 21 432 1.1E-152 T 12-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 AMJ96_CH03701 8fee54a65cc80803833fbffff2e5da55 436 SUPERFAMILY SSF69304 161 433 1.83E-58 T 12-10-2018 AMJ96_CH03701 8fee54a65cc80803833fbffff2e5da55 436 SUPERFAMILY SSF52964 36 164 2.48E-42 T 12-10-2018 AMJ96_CH03701 8fee54a65cc80803833fbffff2e5da55 436 Gene3D G3DSA:3.40.50.10070 26 167 7.2E-42 T 12-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 Pfam PF01751 Toprim domain 477 576 4.4E-16 T 12-10-2018 IPR006171 TOPRIM domain AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 Gene3D G3DSA:3.40.50.670 457 695 6.8E-86 T 12-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 PRINTS PR00418 DNA topoisomerase II family signature 329 342 2.1E-65 T 12-10-2018 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 PRINTS PR00418 DNA topoisomerase II family signature 582 594 2.1E-65 T 12-10-2018 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 PRINTS PR00418 DNA topoisomerase II family signature 120 133 2.1E-65 T 12-10-2018 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 PRINTS PR00418 DNA topoisomerase II family signature 164 178 2.1E-65 T 12-10-2018 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 PRINTS PR00418 DNA topoisomerase II family signature 478 492 2.1E-65 T 12-10-2018 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 PRINTS PR00418 DNA topoisomerase II family signature 625 641 2.1E-65 T 12-10-2018 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 PRINTS PR00418 DNA topoisomerase II family signature 85 100 2.1E-65 T 12-10-2018 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 PRINTS PR00418 DNA topoisomerase II family signature 544 560 2.1E-65 T 12-10-2018 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 PRINTS PR00418 DNA topoisomerase II family signature 562 579 2.1E-65 T 12-10-2018 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 SUPERFAMILY SSF55874 56 260 9.95E-60 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 55 687 6.2E-226 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 ProSitePatterns PS00177 DNA topoisomerase II signature. 480 488 - T 12-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 81 226 2.6E-19 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 53 692 42.799 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 SUPERFAMILY SSF56719 452 685 5.23E-73 T 12-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 SUPERFAMILY SSF54211 281 450 6.07E-43 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 Gene3D G3DSA:3.30.230.10 281 454 1.9E-48 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 Pfam PF00204 DNA gyrase B 281 449 3.5E-43 T 12-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 PRINTS PR01159 DNA gyrase subunit B signature 280 302 5.9E-16 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 PRINTS PR01159 DNA gyrase subunit B signature 433 453 5.9E-16 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 PRINTS PR01159 DNA gyrase subunit B signature 528 537 5.9E-16 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 PRINTS PR01159 DNA gyrase subunit B signature 646 658 5.9E-16 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 PRINTS PR01159 DNA gyrase subunit B signature 56 66 5.9E-16 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 PRINTS PR01159 DNA gyrase subunit B signature 419 433 5.9E-16 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 621 684 2.4E-24 T 12-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 Gene3D G3DSA:3.30.565.10 53 263 2.5E-74 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 SMART SM00387 81 227 1.1E-27 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH02247 94895841f22df25c180b672d1c452407 695 SMART SM00433 85 688 1.7E-282 T 12-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMJ96_CH04136 a1696088a69116e0c5a727ea7a9b27ab 418 Pfam PF02817 e3 binding domain 125 155 3.5E-6 T 12-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 AMJ96_CH04136 a1696088a69116e0c5a727ea7a9b27ab 418 SUPERFAMILY SSF47005 121 160 1.83E-7 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AMJ96_CH04136 a1696088a69116e0c5a727ea7a9b27ab 418 SUPERFAMILY SSF51230 1 93 4.06E-27 T 12-10-2018 IPR011053 Single hybrid motif AMJ96_CH04136 a1696088a69116e0c5a727ea7a9b27ab 418 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 417 6.2E-171 T 12-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AMJ96_CH04136 a1696088a69116e0c5a727ea7a9b27ab 418 Gene3D G3DSA:4.10.320.10 124 162 1.3E-8 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AMJ96_CH04136 a1696088a69116e0c5a727ea7a9b27ab 418 Gene3D G3DSA:3.30.559.10 186 418 5.0E-95 T 12-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AMJ96_CH04136 a1696088a69116e0c5a727ea7a9b27ab 418 SUPERFAMILY SSF52777 188 417 1.07E-89 T 12-10-2018 AMJ96_CH04136 a1696088a69116e0c5a727ea7a9b27ab 418 Pfam PF00364 Biotin-requiring enzyme 4 76 2.3E-21 T 12-10-2018 IPR000089 Biotin/lipoyl attachment AMJ96_CH04136 a1696088a69116e0c5a727ea7a9b27ab 418 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 188 415 1.5E-81 T 12-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 AMJ96_CH04136 a1696088a69116e0c5a727ea7a9b27ab 418 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMJ96_CH04136 a1696088a69116e0c5a727ea7a9b27ab 418 Gene3D G3DSA:2.40.50.100 1 103 3.2E-24 T 12-10-2018 AMJ96_CH03761 8ee401e581dc1fbd01d1dcf4bad194c8 285 Gene3D G3DSA:3.40.50.150 86 285 5.1E-59 T 12-10-2018 AMJ96_CH03761 8ee401e581dc1fbd01d1dcf4bad194c8 285 Pfam PF03705 CheR methyltransferase, all-alpha domain 20 70 1.0E-14 T 12-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AMJ96_CH03761 8ee401e581dc1fbd01d1dcf4bad194c8 285 SUPERFAMILY SSF47757 12 86 3.14E-17 T 12-10-2018 AMJ96_CH03761 8ee401e581dc1fbd01d1dcf4bad194c8 285 SUPERFAMILY SSF53335 87 281 3.66E-48 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH03761 8ee401e581dc1fbd01d1dcf4bad194c8 285 SMART SM00138 18 285 1.2E-86 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_CH03761 8ee401e581dc1fbd01d1dcf4bad194c8 285 Gene3D G3DSA:1.10.155.10 9 85 1.8E-17 T 12-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily AMJ96_CH03761 8ee401e581dc1fbd01d1dcf4bad194c8 285 PIRSF PIRSF000410 1 285 1.9E-95 T 12-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR AMJ96_CH03761 8ee401e581dc1fbd01d1dcf4bad194c8 285 Pfam PF01739 CheR methyltransferase, SAM binding domain 87 279 1.2E-57 T 12-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal AMJ96_CH03761 8ee401e581dc1fbd01d1dcf4bad194c8 285 PRINTS PR00996 Glutamate methyltransferase family signature 80 92 8.8E-43 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_CH03761 8ee401e581dc1fbd01d1dcf4bad194c8 285 PRINTS PR00996 Glutamate methyltransferase family signature 153 169 8.8E-43 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_CH03761 8ee401e581dc1fbd01d1dcf4bad194c8 285 PRINTS PR00996 Glutamate methyltransferase family signature 244 267 8.8E-43 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_CH03761 8ee401e581dc1fbd01d1dcf4bad194c8 285 PRINTS PR00996 Glutamate methyltransferase family signature 40 53 8.8E-43 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_CH03761 8ee401e581dc1fbd01d1dcf4bad194c8 285 PRINTS PR00996 Glutamate methyltransferase family signature 225 239 8.8E-43 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_CH03761 8ee401e581dc1fbd01d1dcf4bad194c8 285 PRINTS PR00996 Glutamate methyltransferase family signature 118 138 8.8E-43 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AMJ96_PD00246 05d2eada11ed818be5f32e389127dca8 563 SUPERFAMILY SSF52540 337 547 1.9E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00246 05d2eada11ed818be5f32e389127dca8 563 ProSitePatterns PS00211 ABC transporters family signature. 467 481 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00246 05d2eada11ed818be5f32e389127dca8 563 SUPERFAMILY SSF90123 9 325 3.14E-24 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_PD00246 05d2eada11ed818be5f32e389127dca8 563 Gene3D G3DSA:1.20.1560.10 10 325 1.5E-10 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_PD00246 05d2eada11ed818be5f32e389127dca8 563 SMART SM00382 369 541 1.1E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00246 05d2eada11ed818be5f32e389127dca8 563 Pfam PF00005 ABC transporter 360 494 1.4E-19 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00246 05d2eada11ed818be5f32e389127dca8 563 Gene3D G3DSA:3.40.50.300 342 559 2.8E-53 T 12-10-2018 AMJ96_CH02419 d11832e2606a65e2afc4f90b028bd572 770 Gene3D G3DSA:3.40.50.10750 586 739 2.3E-89 T 12-10-2018 AMJ96_CH02419 d11832e2606a65e2afc4f90b028bd572 770 SMART SM00919 176 413 6.8E-130 T 12-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AMJ96_CH02419 d11832e2606a65e2afc4f90b028bd572 770 Gene3D G3DSA:3.40.50.10380 9 173 3.6E-67 T 12-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 AMJ96_CH02419 d11832e2606a65e2afc4f90b028bd572 770 Pfam PF03949 Malic enzyme, NAD binding domain 178 370 1.2E-19 T 12-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AMJ96_CH02419 d11832e2606a65e2afc4f90b028bd572 770 Pfam PF00390 Malic enzyme, N-terminal domain 32 164 7.3E-29 T 12-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMJ96_CH02419 d11832e2606a65e2afc4f90b028bd572 770 SMART SM01274 31 164 3.5E-81 T 12-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AMJ96_CH02419 d11832e2606a65e2afc4f90b028bd572 770 Pfam PF01515 Phosphate acetyl/butaryl transferase 442 763 7.1E-103 T 12-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AMJ96_CH02419 d11832e2606a65e2afc4f90b028bd572 770 Gene3D G3DSA:3.40.50.720 174 458 4.1E-76 T 12-10-2018 AMJ96_CH02419 d11832e2606a65e2afc4f90b028bd572 770 SUPERFAMILY SSF51735 176 453 1.11E-83 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02419 d11832e2606a65e2afc4f90b028bd572 770 ProSitePatterns PS00331 Malic enzymes signature. 172 188 - T 12-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 AMJ96_CH02419 d11832e2606a65e2afc4f90b028bd572 770 Gene3D G3DSA:3.40.50.10950 459 763 2.3E-89 T 12-10-2018 AMJ96_CH02419 d11832e2606a65e2afc4f90b028bd572 770 PIRSF PIRSF036684 12 770 0.0 T 12-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 AMJ96_CH02419 d11832e2606a65e2afc4f90b028bd572 770 SUPERFAMILY SSF53659 442 766 3.08E-87 T 12-10-2018 AMJ96_CH02419 d11832e2606a65e2afc4f90b028bd572 770 SUPERFAMILY SSF53223 23 174 1.15E-53 T 12-10-2018 AMJ96_CH00111 7b0f72c3baa8f478fc3b137646ca45a6 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 1.8E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00111 7b0f72c3baa8f478fc3b137646ca45a6 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 1.8E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00111 7b0f72c3baa8f478fc3b137646ca45a6 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 1.8E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00111 7b0f72c3baa8f478fc3b137646ca45a6 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.8E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00111 7b0f72c3baa8f478fc3b137646ca45a6 268 Gene3D G3DSA:1.10.8.400 204 258 9.0E-17 T 12-10-2018 AMJ96_CH00111 7b0f72c3baa8f478fc3b137646ca45a6 268 SUPERFAMILY SSF51735 6 254 1.61E-62 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00111 7b0f72c3baa8f478fc3b137646ca45a6 268 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 252 1.6E-84 T 12-10-2018 AMJ96_CH00111 7b0f72c3baa8f478fc3b137646ca45a6 268 PIRSF PIRSF000094 2 260 6.7E-115 T 12-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMJ96_CH00111 7b0f72c3baa8f478fc3b137646ca45a6 268 Gene3D G3DSA:3.40.50.720 9 201 1.7E-38 T 12-10-2018 AMJ96_CH03813 dc3d8a861244738ee3794ebbb57f6150 284 SUPERFAMILY SSF46785 1 110 4.09E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03813 dc3d8a861244738ee3794ebbb57f6150 284 Gene3D G3DSA:1.10.10.10 1 82 1.8E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03813 dc3d8a861244738ee3794ebbb57f6150 284 Gene3D G3DSA:3.40.190.10 160 252 7.6E-51 T 12-10-2018 AMJ96_CH03813 dc3d8a861244738ee3794ebbb57f6150 284 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.8E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03813 dc3d8a861244738ee3794ebbb57f6150 284 Gene3D G3DSA:3.40.190.10 94 258 7.6E-51 T 12-10-2018 AMJ96_CH03813 dc3d8a861244738ee3794ebbb57f6150 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.3E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03813 dc3d8a861244738ee3794ebbb57f6150 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.3E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03813 dc3d8a861244738ee3794ebbb57f6150 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.3E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03813 dc3d8a861244738ee3794ebbb57f6150 284 Pfam PF03466 LysR substrate binding domain 86 276 2.0E-30 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH03813 dc3d8a861244738ee3794ebbb57f6150 284 SUPERFAMILY SSF53850 88 281 1.09E-29 T 12-10-2018 AMJ96_CH01605 a0158a96bd8bbbada0b5777932027fcc 278 SUPERFAMILY SSF103481 176 277 3.01E-12 T 12-10-2018 AMJ96_CH01605 a0158a96bd8bbbada0b5777932027fcc 278 SUPERFAMILY SSF103481 40 135 6.41E-10 T 12-10-2018 AMJ96_CH01605 a0158a96bd8bbbada0b5777932027fcc 278 Gene3D G3DSA:1.10.3730.20 31 138 1.2E-6 T 12-10-2018 AMJ96_CH01605 a0158a96bd8bbbada0b5777932027fcc 278 Pfam PF00892 EamA-like transporter family 143 275 1.4E-10 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_PB00287 65fb31a02db2c92351d0935ab5f53602 513 Gene3D G3DSA:3.40.50.1980 217 317 3.0E-33 T 12-10-2018 AMJ96_PB00287 65fb31a02db2c92351d0935ab5f53602 513 TIGRFAM TIGR01286 nifK: nitrogenase molybdenum-iron protein beta chain 3 513 2.7E-282 T 12-10-2018 IPR005976 Nitrogenase molybdenum-iron protein beta chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 AMJ96_PB00287 65fb31a02db2c92351d0935ab5f53602 513 Gene3D G3DSA:3.40.50.1980 362 474 9.6E-87 T 12-10-2018 AMJ96_PB00287 65fb31a02db2c92351d0935ab5f53602 513 Pfam PF11844 Domain of unknown function (DUF3364) 1 56 3.2E-25 T 12-10-2018 IPR024564 Nitrogenase molybdenum-iron protein beta chain, N-terminal KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 AMJ96_PB00287 65fb31a02db2c92351d0935ab5f53602 513 Gene3D G3DSA:3.40.50.1980 70 213 1.2E-43 T 12-10-2018 AMJ96_PB00287 65fb31a02db2c92351d0935ab5f53602 513 Gene3D G3DSA:1.20.89.10 318 513 9.6E-87 T 12-10-2018 AMJ96_PB00287 65fb31a02db2c92351d0935ab5f53602 513 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 151 165 - T 12-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 AMJ96_PB00287 65fb31a02db2c92351d0935ab5f53602 513 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 88 95 - T 12-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 AMJ96_PB00287 65fb31a02db2c92351d0935ab5f53602 513 SUPERFAMILY SSF53807 3 512 1.7E-167 T 12-10-2018 AMJ96_PB00287 65fb31a02db2c92351d0935ab5f53602 513 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 70 489 1.4E-115 T 12-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 AMJ96_PB00389 65fb31a02db2c92351d0935ab5f53602 513 Gene3D G3DSA:3.40.50.1980 217 317 3.0E-33 T 12-10-2018 AMJ96_PB00389 65fb31a02db2c92351d0935ab5f53602 513 TIGRFAM TIGR01286 nifK: nitrogenase molybdenum-iron protein beta chain 3 513 2.7E-282 T 12-10-2018 IPR005976 Nitrogenase molybdenum-iron protein beta chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 AMJ96_PB00389 65fb31a02db2c92351d0935ab5f53602 513 Gene3D G3DSA:3.40.50.1980 362 474 9.6E-87 T 12-10-2018 AMJ96_PB00389 65fb31a02db2c92351d0935ab5f53602 513 Pfam PF11844 Domain of unknown function (DUF3364) 1 56 3.2E-25 T 12-10-2018 IPR024564 Nitrogenase molybdenum-iron protein beta chain, N-terminal KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 AMJ96_PB00389 65fb31a02db2c92351d0935ab5f53602 513 Gene3D G3DSA:3.40.50.1980 70 213 1.2E-43 T 12-10-2018 AMJ96_PB00389 65fb31a02db2c92351d0935ab5f53602 513 Gene3D G3DSA:1.20.89.10 318 513 9.6E-87 T 12-10-2018 AMJ96_PB00389 65fb31a02db2c92351d0935ab5f53602 513 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 151 165 - T 12-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 AMJ96_PB00389 65fb31a02db2c92351d0935ab5f53602 513 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 88 95 - T 12-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 AMJ96_PB00389 65fb31a02db2c92351d0935ab5f53602 513 SUPERFAMILY SSF53807 3 512 1.7E-167 T 12-10-2018 AMJ96_PB00389 65fb31a02db2c92351d0935ab5f53602 513 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 70 489 1.4E-115 T 12-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 AMJ96_PD00102 1606ddfffa229a1ce3198082f206902d 308 Gene3D G3DSA:1.10.3720.10 59 303 9.6E-67 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00102 1606ddfffa229a1ce3198082f206902d 308 SUPERFAMILY SSF161098 63 287 2.35E-58 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00102 1606ddfffa229a1ce3198082f206902d 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 288 8.1E-16 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02372 7fdfb668ca6407c4e8ba81ef49a4f757 290 SUPERFAMILY SSF52402 36 255 4.72E-50 T 12-10-2018 AMJ96_CH02372 7fdfb668ca6407c4e8ba81ef49a4f757 290 Gene3D G3DSA:3.40.50.620 30 277 2.0E-41 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH02372 7fdfb668ca6407c4e8ba81ef49a4f757 290 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 29 290 52.138 T 12-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 AMJ96_CH02372 7fdfb668ca6407c4e8ba81ef49a4f757 290 PIRSF PIRSF004976 23 287 8.9E-69 T 12-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 AMJ96_CH02372 7fdfb668ca6407c4e8ba81ef49a4f757 290 Pfam PF01171 PP-loop family 61 224 1.7E-13 T 12-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 AMJ96_CH03678 9b6710f8c723a00dd2592a482226dc26 795 SUPERFAMILY SSF52518 14 373 4.07E-75 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_CH03678 9b6710f8c723a00dd2592a482226dc26 795 SUPERFAMILY SSF52518 382 596 3.94E-25 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_CH03678 9b6710f8c723a00dd2592a482226dc26 795 Gene3D G3DSA:3.40.50.970 2 389 1.3E-181 T 12-10-2018 AMJ96_CH03678 9b6710f8c723a00dd2592a482226dc26 795 ProSitePatterns PS60002 Phosphoketolase signature 1. 147 153 - T 12-10-2018 IPR019790 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, conserved site GO:0005975|GO:0016832 AMJ96_CH03678 9b6710f8c723a00dd2592a482226dc26 795 Gene3D G3DSA:3.40.50.920 610 795 8.8E-79 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMJ96_CH03678 9b6710f8c723a00dd2592a482226dc26 795 ProSitePatterns PS60003 Phosphoketolase signature 2. 160 178 - T 12-10-2018 IPR019789 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, thiamine diphosphate binding site GO:0005975|GO:0016832 AMJ96_CH03678 9b6710f8c723a00dd2592a482226dc26 795 Pfam PF09364 XFP N-terminal domain 11 389 6.6E-194 T 12-10-2018 IPR018970 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal AMJ96_CH03678 9b6710f8c723a00dd2592a482226dc26 795 Gene3D G3DSA:3.40.50.970 390 609 4.8E-105 T 12-10-2018 AMJ96_CH03678 9b6710f8c723a00dd2592a482226dc26 795 Pfam PF09363 XFP C-terminal domain 590 792 1.0E-92 T 12-10-2018 IPR018969 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal GO:0005975|GO:0016832 AMJ96_CH03678 9b6710f8c723a00dd2592a482226dc26 795 PIRSF PIRSF017245 1 794 0.0 T 12-10-2018 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 AMJ96_CH03678 9b6710f8c723a00dd2592a482226dc26 795 Pfam PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 403 578 6.0E-89 T 12-10-2018 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 AMJ96_CH03678 9b6710f8c723a00dd2592a482226dc26 795 Hamap MF_01403 Probable phosphoketolase. 8 794 41.417 T 12-10-2018 IPR023962 Probable phosphoketolase AMJ96_CH03116 a54104734ac4cdc173ebbef5dbd2dce7 345 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 139 7.3E-31 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_CH03116 a54104734ac4cdc173ebbef5dbd2dce7 345 Gene3D G3DSA:3.40.50.720 157 290 9.7E-117 T 12-10-2018 AMJ96_CH03116 a54104734ac4cdc173ebbef5dbd2dce7 345 SUPERFAMILY SSF50129 4 177 2.43E-55 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_CH03116 a54104734ac4cdc173ebbef5dbd2dce7 345 SUPERFAMILY SSF51735 145 309 1.26E-35 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03116 a54104734ac4cdc173ebbef5dbd2dce7 345 TIGRFAM TIGR00692 tdh: L-threonine 3-dehydrogenase 7 343 6.2E-156 T 12-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 AMJ96_CH03116 a54104734ac4cdc173ebbef5dbd2dce7 345 Hamap MF_00627 L-threonine 3-dehydrogenase [tdh]. 5 344 58.542 T 12-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 AMJ96_CH03116 a54104734ac4cdc173ebbef5dbd2dce7 345 Gene3D G3DSA:3.90.180.10 25 332 9.7E-117 T 12-10-2018 AMJ96_CH03116 a54104734ac4cdc173ebbef5dbd2dce7 345 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 66 80 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMJ96_CH03116 a54104734ac4cdc173ebbef5dbd2dce7 345 SMART SM00829 16 342 2.0E-4 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_CH03116 a54104734ac4cdc173ebbef5dbd2dce7 345 Pfam PF00107 Zinc-binding dehydrogenase 178 305 1.9E-24 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_CH02799 f00a1094227baddfc2a49130a62ee655 230 Gene3D G3DSA:3.40.50.880 1 225 4.1E-80 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH02799 f00a1094227baddfc2a49130a62ee655 230 SUPERFAMILY SSF52317 1 224 7.21E-74 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH02799 f00a1094227baddfc2a49130a62ee655 230 Pfam PF01965 DJ-1/PfpI family 25 220 2.2E-14 T 12-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 AMJ96_PA00095 a23ae57863c10e7b25251b5704510519 253 PRINTS PR00721 Stomatin signature 175 196 7.8E-62 T 12-10-2018 IPR001972 Stomatin family GO:0016020 AMJ96_PA00095 a23ae57863c10e7b25251b5704510519 253 PRINTS PR00721 Stomatin signature 30 52 7.8E-62 T 12-10-2018 IPR001972 Stomatin family GO:0016020 AMJ96_PA00095 a23ae57863c10e7b25251b5704510519 253 PRINTS PR00721 Stomatin signature 156 174 7.8E-62 T 12-10-2018 IPR001972 Stomatin family GO:0016020 AMJ96_PA00095 a23ae57863c10e7b25251b5704510519 253 PRINTS PR00721 Stomatin signature 200 223 7.8E-62 T 12-10-2018 IPR001972 Stomatin family GO:0016020 AMJ96_PA00095 a23ae57863c10e7b25251b5704510519 253 PRINTS PR00721 Stomatin signature 112 129 7.8E-62 T 12-10-2018 IPR001972 Stomatin family GO:0016020 AMJ96_PA00095 a23ae57863c10e7b25251b5704510519 253 PRINTS PR00721 Stomatin signature 132 155 7.8E-62 T 12-10-2018 IPR001972 Stomatin family GO:0016020 AMJ96_PA00095 a23ae57863c10e7b25251b5704510519 253 PRINTS PR00721 Stomatin signature 77 98 7.8E-62 T 12-10-2018 IPR001972 Stomatin family GO:0016020 AMJ96_PA00095 a23ae57863c10e7b25251b5704510519 253 SMART SM00244 23 180 3.1E-65 T 12-10-2018 IPR001107 Band 7 domain AMJ96_PA00095 a23ae57863c10e7b25251b5704510519 253 Pfam PF01145 SPFH domain / Band 7 family 28 196 1.4E-33 T 12-10-2018 IPR001107 Band 7 domain AMJ96_PA00095 a23ae57863c10e7b25251b5704510519 253 Gene3D G3DSA:3.30.479.30 51 182 1.4E-46 T 12-10-2018 AMJ96_PA00095 a23ae57863c10e7b25251b5704510519 253 SUPERFAMILY SSF117892 54 187 1.44E-42 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily AMJ96_CH01507 16343686388992b4c159637de7a0dd87 497 SUPERFAMILY SSF53187 175 491 8.79E-120 T 12-10-2018 AMJ96_CH01507 16343686388992b4c159637de7a0dd87 497 PRINTS PR00481 Cytosol aminopeptidase signature 367 382 2.3E-50 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMJ96_CH01507 16343686388992b4c159637de7a0dd87 497 PRINTS PR00481 Cytosol aminopeptidase signature 257 274 2.3E-50 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMJ96_CH01507 16343686388992b4c159637de7a0dd87 497 PRINTS PR00481 Cytosol aminopeptidase signature 338 358 2.3E-50 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMJ96_CH01507 16343686388992b4c159637de7a0dd87 497 PRINTS PR00481 Cytosol aminopeptidase signature 279 300 2.3E-50 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMJ96_CH01507 16343686388992b4c159637de7a0dd87 497 PRINTS PR00481 Cytosol aminopeptidase signature 316 337 2.3E-50 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMJ96_CH01507 16343686388992b4c159637de7a0dd87 497 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 342 349 - T 12-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMJ96_CH01507 16343686388992b4c159637de7a0dd87 497 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 36 143 7.6E-21 T 12-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMJ96_CH01507 16343686388992b4c159637de7a0dd87 497 SUPERFAMILY SSF52949 4 180 4.0E-22 T 12-10-2018 AMJ96_CH01507 16343686388992b4c159637de7a0dd87 497 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 495 35.116 T 12-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 AMJ96_CH01507 16343686388992b4c159637de7a0dd87 497 Gene3D G3DSA:3.40.630.10 176 494 5.0E-130 T 12-10-2018 AMJ96_CH01507 16343686388992b4c159637de7a0dd87 497 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 181 486 2.0E-124 T 12-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMJ96_CH01507 16343686388992b4c159637de7a0dd87 497 Gene3D G3DSA:3.40.220.10 4 175 8.5E-22 T 12-10-2018 AMJ96_CH03875 9552b1d2981df64b7958c6d476969bd7 329 SUPERFAMILY SSF50998 14 327 2.43E-27 T 12-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AMJ96_CH03875 9552b1d2981df64b7958c6d476969bd7 329 Gene3D G3DSA:2.130.10.10 157 237 3.5E-8 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMJ96_CH03875 9552b1d2981df64b7958c6d476969bd7 329 Pfam PF12894 Anaphase-promoting complex subunit 4 WD40 domain 263 327 7.1E-6 T 12-10-2018 IPR024977 Anaphase-promoting complex subunit 4, WD40 domain AMJ96_CH03875 9552b1d2981df64b7958c6d476969bd7 329 Gene3D G3DSA:2.130.10.10 32 156 5.6E-6 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMJ96_CH03875 9552b1d2981df64b7958c6d476969bd7 329 SMART SM00320 198 236 71.0 T 12-10-2018 IPR001680 WD40 repeat GO:0005515 AMJ96_CH03875 9552b1d2981df64b7958c6d476969bd7 329 SMART SM00320 155 191 28.0 T 12-10-2018 IPR001680 WD40 repeat GO:0005515 AMJ96_CH03875 9552b1d2981df64b7958c6d476969bd7 329 SMART SM00320 286 326 6.7 T 12-10-2018 IPR001680 WD40 repeat GO:0005515 AMJ96_CH03875 9552b1d2981df64b7958c6d476969bd7 329 SMART SM00320 74 114 380.0 T 12-10-2018 IPR001680 WD40 repeat GO:0005515 AMJ96_CH03875 9552b1d2981df64b7958c6d476969bd7 329 Gene3D G3DSA:2.130.10.10 238 329 2.1E-9 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMJ96_CH01984 473df96f20ee4db4c35d360dfb541932 186 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 186 5.8E-63 T 12-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 AMJ96_CH01984 473df96f20ee4db4c35d360dfb541932 186 Hamap MF_00040 Ribosome-recycling factor [frr]. 4 186 25.684 T 12-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 AMJ96_CH01984 473df96f20ee4db4c35d360dfb541932 186 SUPERFAMILY SSF55194 5 186 2.62E-68 T 12-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 AMJ96_CH01984 473df96f20ee4db4c35d360dfb541932 186 Gene3D G3DSA:1.10.132.20 13 183 9.0E-65 T 12-10-2018 AMJ96_CH01984 473df96f20ee4db4c35d360dfb541932 186 Gene3D G3DSA:3.30.1360.40 32 106 9.0E-65 T 12-10-2018 AMJ96_CH01984 473df96f20ee4db4c35d360dfb541932 186 Pfam PF01765 Ribosome recycling factor 21 184 7.4E-59 T 12-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 AMJ96_CH00947 99b535eac675ad3b53d13e0a3864079a 294 Gene3D G3DSA:3.40.190.10 161 259 3.9E-38 T 12-10-2018 AMJ96_CH00947 99b535eac675ad3b53d13e0a3864079a 294 Gene3D G3DSA:3.40.190.10 101 283 3.9E-38 T 12-10-2018 AMJ96_CH00947 99b535eac675ad3b53d13e0a3864079a 294 Gene3D G3DSA:1.10.10.10 5 93 5.5E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00947 99b535eac675ad3b53d13e0a3864079a 294 SUPERFAMILY SSF53850 92 290 1.07E-27 T 12-10-2018 AMJ96_CH00947 99b535eac675ad3b53d13e0a3864079a 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 2.1E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH00947 99b535eac675ad3b53d13e0a3864079a 294 SUPERFAMILY SSF46785 3 84 3.74E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00947 99b535eac675ad3b53d13e0a3864079a 294 Pfam PF03466 LysR substrate binding domain 92 288 3.4E-27 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 SUPERFAMILY SSF51905 146 303 8.91E-28 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 SUPERFAMILY SSF55124 519 640 2.78E-24 T 12-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 Gene3D G3DSA:3.30.390.30 315 393 1.0E-7 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 232 246 4.6E-11 T 12-10-2018 AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 104 113 4.6E-11 T 12-10-2018 AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 146 171 4.6E-11 T 12-10-2018 AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 278 4.6E-11 T 12-10-2018 AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 PRINTS PR00397 Sirohaem Fe-binding site signature 678 696 3.6E-6 T 12-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 PRINTS PR00397 Sirohaem Fe-binding site signature 635 653 3.6E-6 T 12-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 5 793 2.3E-268 T 12-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 SUPERFAMILY SSF56014 633 803 4.32E-47 T 12-10-2018 AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 Gene3D G3DSA:3.50.50.60 6 279 7.0E-89 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 Gene3D G3DSA:3.50.50.60 109 243 7.0E-89 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 632 769 4.6E-26 T 12-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 PIRSF PIRSF037149 1 814 0.0 T 12-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 558 621 3.1E-13 T 12-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 Gene3D G3DSA:1.10.10.1100 419 473 1.0E-8 T 12-10-2018 AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 678 694 - T 12-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 SUPERFAMILY SSF51905 3 189 3.81E-43 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 Pfam PF04324 BFD-like [2Fe-2S] binding domain 420 468 2.1E-11 T 12-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 Pfam PF04324 BFD-like [2Fe-2S] binding domain 483 532 1.5E-12 T 12-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 Gene3D G3DSA:3.30.413.10 626 787 1.2E-31 T 12-10-2018 AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 278 4.0E-15 T 12-10-2018 AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 231 247 4.0E-15 T 12-10-2018 AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 4.0E-15 T 12-10-2018 AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 4.0E-15 T 12-10-2018 AMJ96_CH01834 d89c4bd22e81032a5653307283dacc30 816 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 278 9.8E-55 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_CH03379 162746cda5f616bbc9145e6764f03646 310 SUPERFAMILY SSF54593 4 283 5.65E-46 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH03379 162746cda5f616bbc9145e6764f03646 310 Gene3D G3DSA:3.10.180.10 6 307 2.4E-104 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH03379 162746cda5f616bbc9145e6764f03646 310 Gene3D G3DSA:3.10.180.10 67 212 2.4E-104 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH03379 162746cda5f616bbc9145e6764f03646 310 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 268 9.3E-23 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_PD00498 0bb2a6c397db9c5bc40321a315d0e4e4 332 SUPERFAMILY SSF46689 277 329 1.43E-5 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00498 0bb2a6c397db9c5bc40321a315d0e4e4 332 SMART SM00342 241 326 3.3E-23 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PD00498 0bb2a6c397db9c5bc40321a315d0e4e4 332 SUPERFAMILY SSF46689 225 274 5.02E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00498 0bb2a6c397db9c5bc40321a315d0e4e4 332 Pfam PF12833 Helix-turn-helix domain 247 328 1.7E-24 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PD00498 0bb2a6c397db9c5bc40321a315d0e4e4 332 Pfam PF14525 AraC-binding-like domain 23 202 2.3E-10 T 12-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like AMJ96_PD00498 0bb2a6c397db9c5bc40321a315d0e4e4 332 Gene3D G3DSA:1.10.10.60 225 330 2.1E-32 T 12-10-2018 AMJ96_CH00048 136de48ecb9927b14f73c85636041851 202 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 162 174 - T 12-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AMJ96_CH00048 136de48ecb9927b14f73c85636041851 202 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 37 180 4.8E-64 T 12-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AMJ96_CH00048 136de48ecb9927b14f73c85636041851 202 Gene3D G3DSA:3.30.230.40 1 95 7.3E-39 T 12-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 AMJ96_CH00048 136de48ecb9927b14f73c85636041851 202 SUPERFAMILY SSF54211 8 92 5.31E-35 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_CH00048 136de48ecb9927b14f73c85636041851 202 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 67 80 - T 12-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AMJ96_CH00048 136de48ecb9927b14f73c85636041851 202 Gene3D G3DSA:3.30.230.40 96 202 5.5E-38 T 12-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 AMJ96_CH00048 136de48ecb9927b14f73c85636041851 202 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 8 201 43.135 T 12-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AMJ96_CH00048 136de48ecb9927b14f73c85636041851 202 SUPERFAMILY SSF54211 94 184 1.09E-33 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_CH01523 e414ee208ac61b3d7f6b845e22c39a4d 679 Pfam PF02151 UvrB/uvrC motif 254 286 3.7E-10 T 12-10-2018 IPR001943 UVR domain GO:0005515 AMJ96_CH01523 e414ee208ac61b3d7f6b845e22c39a4d 679 Pfam PF12826 Helix-hairpin-helix motif 628 678 6.9E-7 T 12-10-2018 AMJ96_CH01523 e414ee208ac61b3d7f6b845e22c39a4d 679 Gene3D G3DSA:3.40.1440.10 53 151 5.5E-31 T 12-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 AMJ96_CH01523 e414ee208ac61b3d7f6b845e22c39a4d 679 Gene3D G3DSA:3.30.420.340 423 614 2.2E-47 T 12-10-2018 IPR038476 UvrC homology region 2 superfamily AMJ96_CH01523 e414ee208ac61b3d7f6b845e22c39a4d 679 SMART SM00465 66 147 5.0E-17 T 12-10-2018 IPR000305 GIY-YIG endonuclease AMJ96_CH01523 e414ee208ac61b3d7f6b845e22c39a4d 679 SMART SM00278 653 672 0.32 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMJ96_CH01523 e414ee208ac61b3d7f6b845e22c39a4d 679 SMART SM00278 621 640 120.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AMJ96_CH01523 e414ee208ac61b3d7f6b845e22c39a4d 679 SUPERFAMILY SSF82771 65 149 6.15E-20 T 12-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 AMJ96_CH01523 e414ee208ac61b3d7f6b845e22c39a4d 679 SUPERFAMILY SSF47781 587 676 8.9E-22 T 12-10-2018 IPR010994 RuvA domain 2-like AMJ96_CH01523 e414ee208ac61b3d7f6b845e22c39a4d 679 Hamap MF_00203 UvrABC system protein C [uvrC]. 53 672 27.334 T 12-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 AMJ96_CH01523 e414ee208ac61b3d7f6b845e22c39a4d 679 SUPERFAMILY SSF46600 239 292 6.8E-13 T 12-10-2018 IPR036876 UVR domain superfamily AMJ96_CH01523 e414ee208ac61b3d7f6b845e22c39a4d 679 Pfam PF01541 GIY-YIG catalytic domain 68 141 5.5E-9 T 12-10-2018 IPR000305 GIY-YIG endonuclease AMJ96_CH01523 e414ee208ac61b3d7f6b845e22c39a4d 679 Gene3D G3DSA:1.10.150.20 615 673 8.3E-19 T 12-10-2018 AMJ96_CH01523 e414ee208ac61b3d7f6b845e22c39a4d 679 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 58 652 1.5E-167 T 12-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 AMJ96_CH01523 e414ee208ac61b3d7f6b845e22c39a4d 679 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 430 607 2.3E-50 T 12-10-2018 IPR001162 UvrC family homology region AMJ96_CH02223 81413e035ea6091a374deb1fc173c6fb 91 Gene3D G3DSA:1.10.357.10 2 90 6.2E-11 T 12-10-2018 AMJ96_CH02223 81413e035ea6091a374deb1fc173c6fb 91 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 5 87 3.5E-5 T 12-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 AMJ96_CH02223 81413e035ea6091a374deb1fc173c6fb 91 SUPERFAMILY SSF48498 4 87 7.56E-12 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_PB00274 c7e6636f43ebc53294b12e3f31e8baff 67 Pfam PF00364 Biotin-requiring enzyme 5 62 3.1E-16 T 12-10-2018 IPR000089 Biotin/lipoyl attachment AMJ96_PB00274 c7e6636f43ebc53294b12e3f31e8baff 67 Gene3D G3DSA:2.40.50.100 1 63 8.4E-20 T 12-10-2018 AMJ96_PB00274 c7e6636f43ebc53294b12e3f31e8baff 67 SUPERFAMILY SSF51230 1 62 3.93E-17 T 12-10-2018 IPR011053 Single hybrid motif AMJ96_CH01017 1cce09b9eac33bec308966bbbeb77cc1 91 Gene3D G3DSA:1.10.8.1250 13 87 2.4E-11 T 12-10-2018 IPR038296 Antitoxin ParD superfamily AMJ96_CH01017 1cce09b9eac33bec308966bbbeb77cc1 91 SUPERFAMILY SSF47598 6 48 1.67E-6 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMJ96_CH01017 1cce09b9eac33bec308966bbbeb77cc1 91 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 8 73 1.4E-14 T 12-10-2018 IPR022789 Antitoxin ParD AMJ96_CH01017 1cce09b9eac33bec308966bbbeb77cc1 91 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 4 77 3.0E-9 T 12-10-2018 IPR022789 Antitoxin ParD AMJ96_CH00615 8a9576ec361a654d6f9e6175fe2818e3 430 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 428 42.905 T 12-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH00615 8a9576ec361a654d6f9e6175fe2818e3 430 Gene3D G3DSA:3.65.10.10 21 240 7.8E-155 T 12-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AMJ96_CH00615 8a9576ec361a654d6f9e6175fe2818e3 430 SUPERFAMILY SSF55205 1 429 1.96E-129 T 12-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AMJ96_CH00615 8a9576ec361a654d6f9e6175fe2818e3 430 Gene3D G3DSA:3.65.10.10 6 424 7.8E-155 T 12-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AMJ96_CH00615 8a9576ec361a654d6f9e6175fe2818e3 430 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 8 418 1.3E-93 T 12-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AMJ96_CH00615 8a9576ec361a654d6f9e6175fe2818e3 430 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 427 1.4E-163 T 12-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH04231 f8595f9b70ac2571e2ef866226a7eece 214 Pfam PF06283 Trehalose utilisation 3 211 4.5E-38 T 12-10-2018 IPR029010 ThuA-like domain AMJ96_CH04231 f8595f9b70ac2571e2ef866226a7eece 214 SUPERFAMILY SSF52317 3 213 4.12E-39 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH04231 f8595f9b70ac2571e2ef866226a7eece 214 Gene3D G3DSA:3.40.50.880 1 214 1.6E-32 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH03562 085059223ae539a35db697d3aaad5abb 594 Gene3D G3DSA:3.50.30.80 384 547 5.9E-34 T 12-10-2018 AMJ96_CH03562 085059223ae539a35db697d3aaad5abb 594 SUPERFAMILY SSF143975 6 381 1.14E-114 T 12-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMJ96_CH03562 085059223ae539a35db697d3aaad5abb 594 SUPERFAMILY SSF52016 384 577 2.43E-47 T 12-10-2018 AMJ96_CH03562 085059223ae539a35db697d3aaad5abb 594 Pfam PF00920 Dehydratase family 47 574 1.3E-152 T 12-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMJ96_CH03029 e865effd1fef3c68ede5d640a3b6c381 253 SUPERFAMILY SSF47090 182 246 4.12E-16 T 12-10-2018 IPR036365 PGBD-like superfamily AMJ96_CH03029 e865effd1fef3c68ede5d640a3b6c381 253 SUPERFAMILY SSF55846 13 169 5.76E-54 T 12-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AMJ96_CH03029 e865effd1fef3c68ede5d640a3b6c381 253 Pfam PF01471 Putative peptidoglycan binding domain 187 242 8.0E-12 T 12-10-2018 IPR002477 Peptidoglycan binding-like AMJ96_CH03029 e865effd1fef3c68ede5d640a3b6c381 253 Gene3D G3DSA:1.10.101.10 169 247 6.1E-17 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMJ96_CH03029 e865effd1fef3c68ede5d640a3b6c381 253 SMART SM00644 16 153 4.1E-38 T 12-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AMJ96_CH03029 e865effd1fef3c68ede5d640a3b6c381 253 Gene3D G3DSA:3.40.80.10 5 166 5.1E-50 T 12-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AMJ96_CH03029 e865effd1fef3c68ede5d640a3b6c381 253 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 25 153 6.3E-31 T 12-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AMJ96_CH00620 b44ecd921e1fd69ac62729596c3b810a 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 70 2.0E-32 T 12-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 AMJ96_CH00620 b44ecd921e1fd69ac62729596c3b810a 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 26.022 T 12-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 AMJ96_CH00620 b44ecd921e1fd69ac62729596c3b810a 72 Gene3D G3DSA:2.40.50.140 1 72 3.5E-34 T 12-10-2018 AMJ96_CH00620 b44ecd921e1fd69ac62729596c3b810a 72 SUPERFAMILY SSF50249 1 71 7.71E-27 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH00620 b44ecd921e1fd69ac62729596c3b810a 72 Pfam PF01176 Translation initiation factor 1A / IF-1 8 70 2.3E-27 T 12-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 AMJ96_CH00895 3b5e9a7ae828c8bd116fd2e819093fd9 610 Pfam PF14559 Tetratricopeptide repeat 68 105 2.0E-6 T 12-10-2018 AMJ96_CH00895 3b5e9a7ae828c8bd116fd2e819093fd9 610 SUPERFAMILY SSF48452 58 350 2.98E-13 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH00895 3b5e9a7ae828c8bd116fd2e819093fd9 610 SMART SM00028 325 358 350.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH00895 3b5e9a7ae828c8bd116fd2e819093fd9 610 SMART SM00028 535 568 190.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH00895 3b5e9a7ae828c8bd116fd2e819093fd9 610 SMART SM00028 359 392 29.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH00895 3b5e9a7ae828c8bd116fd2e819093fd9 610 SMART SM00028 53 86 13.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH00895 3b5e9a7ae828c8bd116fd2e819093fd9 610 SMART SM00028 432 465 7.8E-7 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH00895 3b5e9a7ae828c8bd116fd2e819093fd9 610 SMART SM00028 466 500 78.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH00895 3b5e9a7ae828c8bd116fd2e819093fd9 610 SMART SM00028 501 534 19.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH00895 3b5e9a7ae828c8bd116fd2e819093fd9 610 Gene3D G3DSA:1.25.40.10 271 359 1.9E-5 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH00895 3b5e9a7ae828c8bd116fd2e819093fd9 610 SUPERFAMILY SSF48452 59 251 1.41E-8 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH00895 3b5e9a7ae828c8bd116fd2e819093fd9 610 Pfam PF13432 Tetratricopeptide repeat 363 420 1.5E-5 T 12-10-2018 AMJ96_CH00895 3b5e9a7ae828c8bd116fd2e819093fd9 610 Pfam PF13432 Tetratricopeptide repeat 507 563 2.4E-5 T 12-10-2018 AMJ96_CH00895 3b5e9a7ae828c8bd116fd2e819093fd9 610 SUPERFAMILY SSF48452 313 570 2.31E-29 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH00895 3b5e9a7ae828c8bd116fd2e819093fd9 610 Pfam PF00515 Tetratricopeptide repeat 434 464 5.8E-8 T 12-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 AMJ96_CH00895 3b5e9a7ae828c8bd116fd2e819093fd9 610 Gene3D G3DSA:1.25.40.10 34 265 9.9E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH00895 3b5e9a7ae828c8bd116fd2e819093fd9 610 Gene3D G3DSA:1.25.40.10 360 497 3.6E-32 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH00895 3b5e9a7ae828c8bd116fd2e819093fd9 610 Gene3D G3DSA:1.25.40.10 503 595 3.1E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03368 a6224ab9da61cef799f5757922a0d005 737 Pfam PF00665 Integrase core domain 302 435 1.2E-9 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMJ96_CH03368 a6224ab9da61cef799f5757922a0d005 737 SUPERFAMILY SSF53098 298 439 1.5E-11 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_CH03368 a6224ab9da61cef799f5757922a0d005 737 Pfam PF09299 Mu transposase, C-terminal 531 583 1.1E-4 T 12-10-2018 IPR015378 Transposase-like, Mu, C-terminal AMJ96_CH03368 a6224ab9da61cef799f5757922a0d005 737 Gene3D G3DSA:3.30.420.10 294 522 2.3E-15 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_CH03944 99666ecee0e11a7652729367783d3485 379 Gene3D G3DSA:2.40.420.20 47 362 7.7E-67 T 12-10-2018 AMJ96_CH03944 99666ecee0e11a7652729367783d3485 379 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 67 273 1.5E-21 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMJ96_CH03944 99666ecee0e11a7652729367783d3485 379 Gene3D G3DSA:2.40.30.170 54 289 7.7E-67 T 12-10-2018 AMJ96_CH03944 99666ecee0e11a7652729367783d3485 379 Gene3D G3DSA:1.10.287.470 102 174 7.7E-67 T 12-10-2018 AMJ96_CH03944 99666ecee0e11a7652729367783d3485 379 Gene3D G3DSA:2.40.50.100 68 214 7.7E-67 T 12-10-2018 AMJ96_CH03944 99666ecee0e11a7652729367783d3485 379 SUPERFAMILY SSF111369 57 276 3.53E-24 T 12-10-2018 AMJ96_CH03944 99666ecee0e11a7652729367783d3485 379 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 364 2.5E-74 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMJ96_CH03859 991324b5dee25fe61ee11e03c38ef5b4 464 Gene3D G3DSA:3.40.50.1220 286 463 5.4E-83 T 12-10-2018 AMJ96_CH03859 991324b5dee25fe61ee11e03c38ef5b4 464 PIRSF PIRSF000204 1 464 5.7E-211 T 12-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 AMJ96_CH03859 991324b5dee25fe61ee11e03c38ef5b4 464 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 460 2.0E-193 T 12-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AMJ96_CH03859 991324b5dee25fe61ee11e03c38ef5b4 464 SUPERFAMILY SSF52467 291 462 3.27E-73 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMJ96_PC00307 c345bbfe206e9333cc0c6d7b436edb85 402 Pfam PF01979 Amidohydrolase family 61 361 9.0E-8 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMJ96_PC00307 c345bbfe206e9333cc0c6d7b436edb85 402 PIRSF PIRSF039004 3 396 5.1E-134 T 12-10-2018 IPR020043 Deacetylase Atu3266-like GO:0019213 AMJ96_PC00307 c345bbfe206e9333cc0c6d7b436edb85 402 Gene3D G3DSA:3.20.20.140 66 308 2.0E-196 T 12-10-2018 AMJ96_PC00307 c345bbfe206e9333cc0c6d7b436edb85 402 SUPERFAMILY SSF51338 11 87 3.51E-11 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_PC00307 c345bbfe206e9333cc0c6d7b436edb85 402 Gene3D G3DSA:2.30.40.10 52 386 2.0E-196 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_PC00307 c345bbfe206e9333cc0c6d7b436edb85 402 SUPERFAMILY SSF51556 65 329 6.82E-61 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_CH04201 641e0b32d8238b04a45f8a83e96585f5 423 Gene3D G3DSA:3.40.50.12160 3 120 3.5E-17 T 12-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily AMJ96_CH04201 641e0b32d8238b04a45f8a83e96585f5 423 Gene3D G3DSA:3.80.30.20 135 369 1.3E-66 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMJ96_CH04201 641e0b32d8238b04a45f8a83e96585f5 423 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 5 412 3.6E-99 T 12-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 AMJ96_CH04201 641e0b32d8238b04a45f8a83e96585f5 423 SMART SM00729 137 355 1.7E-55 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMJ96_CH04201 641e0b32d8238b04a45f8a83e96585f5 423 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 7 391 1.4E-129 T 12-10-2018 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 AMJ96_CH04201 641e0b32d8238b04a45f8a83e96585f5 423 SUPERFAMILY SSF102114 118 356 4.05E-52 T 12-10-2018 AMJ96_CH04201 641e0b32d8238b04a45f8a83e96585f5 423 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 141 161 - T 12-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 AMJ96_CH04201 641e0b32d8238b04a45f8a83e96585f5 423 Pfam PF04055 Radical SAM superfamily 142 313 3.1E-22 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMJ96_CH04201 641e0b32d8238b04a45f8a83e96585f5 423 Pfam PF00919 Uncharacterized protein family UPF0004 5 90 6.8E-18 T 12-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 AMJ96_CH00091 2e2061c300c43650c0ad4ec416e4565a 485 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 217 432 1.2E-66 T 12-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 AMJ96_CH00091 2e2061c300c43650c0ad4ec416e4565a 485 SUPERFAMILY SSF51735 10 276 2.48E-87 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00091 2e2061c300c43650c0ad4ec416e4565a 485 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 28 188 3.6E-33 T 12-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_CH00091 2e2061c300c43650c0ad4ec416e4565a 485 Gene3D G3DSA:3.40.50.720 4 281 5.9E-97 T 12-10-2018 AMJ96_CH00091 2e2061c300c43650c0ad4ec416e4565a 485 SUPERFAMILY SSF48179 285 480 1.22E-49 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_CH00091 2e2061c300c43650c0ad4ec416e4565a 485 PRINTS PR00084 Mannitol dehydrogenase signature 179 192 8.9E-17 T 12-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMJ96_CH00091 2e2061c300c43650c0ad4ec416e4565a 485 PRINTS PR00084 Mannitol dehydrogenase signature 248 263 8.9E-17 T 12-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMJ96_CH00091 2e2061c300c43650c0ad4ec416e4565a 485 PRINTS PR00084 Mannitol dehydrogenase signature 218 231 8.9E-17 T 12-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMJ96_CH00091 2e2061c300c43650c0ad4ec416e4565a 485 PRINTS PR00084 Mannitol dehydrogenase signature 29 39 8.9E-17 T 12-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMJ96_CH00091 2e2061c300c43650c0ad4ec416e4565a 485 Gene3D G3DSA:1.10.1040.10 283 481 5.0E-60 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMJ96_CH00091 2e2061c300c43650c0ad4ec416e4565a 485 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 218 230 - T 12-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMJ96_CH03178 2efb1baab6bac3490fb42d81c0536d9c 366 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 62 296 6.8E-66 T 12-10-2018 IPR003788 Protein arginine methyltransferase NDUFAF7 Reactome: R-HSA-6799198 AMJ96_CH03178 2efb1baab6bac3490fb42d81c0536d9c 366 Gene3D G3DSA:3.40.50.12710 1 363 5.6E-106 T 12-10-2018 IPR038375 Protein arginine methyltransferase NDUFAF7 superfamily Reactome: R-HSA-6799198 AMJ96_CH03178 2efb1baab6bac3490fb42d81c0536d9c 366 SUPERFAMILY SSF53335 7 356 8.81E-106 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH03520 213b08dfade33be62bcbe707d7dcdc70 570 ProSitePatterns PS01120 Urease nickel ligands signature. 129 142 - T 12-10-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_CH03520 213b08dfade33be62bcbe707d7dcdc70 570 Pfam PF00449 Urease alpha-subunit, N-terminal domain 4 121 4.8E-56 T 12-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_CH03520 213b08dfade33be62bcbe707d7dcdc70 570 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 297 314 2.0E-33 T 12-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_CH03520 213b08dfade33be62bcbe707d7dcdc70 570 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 336 352 2.0E-33 T 12-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_CH03520 213b08dfade33be62bcbe707d7dcdc70 570 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 429 442 2.0E-33 T 12-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_CH03520 213b08dfade33be62bcbe707d7dcdc70 570 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 403 418 2.0E-33 T 12-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_CH03520 213b08dfade33be62bcbe707d7dcdc70 570 SUPERFAMILY SSF51338 4 179 1.06E-64 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH03520 213b08dfade33be62bcbe707d7dcdc70 570 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 4 570 1.1E-297 T 12-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_CH03520 213b08dfade33be62bcbe707d7dcdc70 570 SUPERFAMILY SSF51338 425 479 1.05E-5 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH03520 213b08dfade33be62bcbe707d7dcdc70 570 Gene3D G3DSA:2.30.40.10 5 482 1.1E-293 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH03520 213b08dfade33be62bcbe707d7dcdc70 570 Gene3D G3DSA:3.20.20.140 131 570 1.1E-293 T 12-10-2018 AMJ96_CH03520 213b08dfade33be62bcbe707d7dcdc70 570 Hamap MF_01953 Urease subunit alpha [ureC]. 3 570 56.0 T 12-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_CH03520 213b08dfade33be62bcbe707d7dcdc70 570 SUPERFAMILY SSF51556 131 570 2.6E-197 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_CH03520 213b08dfade33be62bcbe707d7dcdc70 570 Pfam PF01979 Amidohydrolase family 127 451 2.0E-77 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMJ96_CH03520 213b08dfade33be62bcbe707d7dcdc70 570 ProSitePatterns PS00145 Urease active site. 319 335 - T 12-10-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_PB00239 2432d855c07df14ddc183b4d08e2a7ec 675 Gene3D G3DSA:3.55.50.10 106 196 1.3E-32 T 12-10-2018 AMJ96_PB00239 2432d855c07df14ddc183b4d08e2a7ec 675 Gene3D G3DSA:3.30.1920.30 275 328 1.3E-7 T 12-10-2018 AMJ96_PB00239 2432d855c07df14ddc183b4d08e2a7ec 675 Gene3D G3DSA:2.40.50.230 411 513 4.1E-41 T 12-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily AMJ96_PB00239 2432d855c07df14ddc183b4d08e2a7ec 675 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 30 252 1.8E-48 T 12-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein AMJ96_PB00239 2432d855c07df14ddc183b4d08e2a7ec 675 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 292 561 1.2E-68 T 12-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein AMJ96_PB00239 2432d855c07df14ddc183b4d08e2a7ec 675 SUPERFAMILY SSF69279 27 192 1.28E-51 T 12-10-2018 AMJ96_PB00239 2432d855c07df14ddc183b4d08e2a7ec 675 SUPERFAMILY SSF69279 216 419 6.8E-26 T 12-10-2018 AMJ96_PB00239 2432d855c07df14ddc183b4d08e2a7ec 675 Pfam PF05954 Phage late control gene D protein (GPD) 36 360 7.5E-77 T 12-10-2018 AMJ96_PB00239 2432d855c07df14ddc183b4d08e2a7ec 675 SUPERFAMILY SSF69349 498 580 9.42E-20 T 12-10-2018 AMJ96_PB00239 2432d855c07df14ddc183b4d08e2a7ec 675 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 23 253 1.7E-60 T 12-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset AMJ96_PB00239 2432d855c07df14ddc183b4d08e2a7ec 675 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 282 576 4.6E-94 T 12-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset AMJ96_PB00239 2432d855c07df14ddc183b4d08e2a7ec 675 SUPERFAMILY SSF69255 422 508 4.45E-31 T 12-10-2018 AMJ96_CH03448 eccc8ae8a04fad050a0bf6b9e5edda51 318 Gene3D G3DSA:3.60.10.10 95 312 3.5E-23 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMJ96_CH03448 eccc8ae8a04fad050a0bf6b9e5edda51 318 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 99 297 2.1E-6 T 12-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase AMJ96_CH03448 eccc8ae8a04fad050a0bf6b9e5edda51 318 SUPERFAMILY SSF56219 95 306 1.1E-24 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMJ96_PD00331 9e308cc4769dedfd417196c856f2aca1 528 Gene3D G3DSA:3.90.76.10 44 204 7.2E-101 T 12-10-2018 AMJ96_PD00331 9e308cc4769dedfd417196c856f2aca1 528 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 73 437 1.6E-71 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_PD00331 9e308cc4769dedfd417196c856f2aca1 528 Gene3D G3DSA:3.10.105.10 286 504 7.2E-101 T 12-10-2018 AMJ96_PD00331 9e308cc4769dedfd417196c856f2aca1 528 Gene3D G3DSA:3.40.190.10 205 514 7.2E-101 T 12-10-2018 AMJ96_PD00331 9e308cc4769dedfd417196c856f2aca1 528 SUPERFAMILY SSF53850 24 527 5.43E-100 T 12-10-2018 AMJ96_PD00331 9e308cc4769dedfd417196c856f2aca1 528 PIRSF PIRSF002741 6 525 3.5E-63 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_CH02516 271bd08e4baffbdd24965b64f0abd778 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 99 124 8.4E-11 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMJ96_CH02516 271bd08e4baffbdd24965b64f0abd778 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 55 77 8.4E-11 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMJ96_CH02516 271bd08e4baffbdd24965b64f0abd778 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 136 160 8.4E-11 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMJ96_CH02516 271bd08e4baffbdd24965b64f0abd778 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 173 192 8.4E-11 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMJ96_CH02516 271bd08e4baffbdd24965b64f0abd778 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 193 212 8.4E-11 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMJ96_CH02516 271bd08e4baffbdd24965b64f0abd778 253 Pfam PF01061 ABC-2 type transporter 7 216 2.7E-34 T 12-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 AMJ96_CH02516 271bd08e4baffbdd24965b64f0abd778 253 PIRSF PIRSF006648 10 249 6.7E-29 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMJ96_PC00279 1f64f0250b392961ac680e71ab5934b8 347 Gene3D G3DSA:3.90.180.10 13 331 8.1E-101 T 12-10-2018 AMJ96_PC00279 1f64f0250b392961ac680e71ab5934b8 347 Gene3D G3DSA:3.40.50.720 156 292 8.1E-101 T 12-10-2018 AMJ96_PC00279 1f64f0250b392961ac680e71ab5934b8 347 Pfam PF00107 Zinc-binding dehydrogenase 179 306 6.3E-21 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_PC00279 1f64f0250b392961ac680e71ab5934b8 347 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 65 79 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMJ96_PC00279 1f64f0250b392961ac680e71ab5934b8 347 SUPERFAMILY SSF50129 4 177 5.63E-49 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_PC00279 1f64f0250b392961ac680e71ab5934b8 347 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 138 1.6E-24 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_PC00279 1f64f0250b392961ac680e71ab5934b8 347 SUPERFAMILY SSF51735 142 311 1.4E-36 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00279 1f64f0250b392961ac680e71ab5934b8 347 SMART SM00829 11 337 5.1E-5 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_CH02325 40d5fee8a4f48a3ff15864486818a654 408 Gene3D G3DSA:2.70.70.10 251 400 1.1E-47 T 12-10-2018 IPR011055 Duplicated hybrid motif AMJ96_CH02325 40d5fee8a4f48a3ff15864486818a654 408 SUPERFAMILY SSF51261 267 396 1.94E-51 T 12-10-2018 IPR011055 Duplicated hybrid motif AMJ96_CH02325 40d5fee8a4f48a3ff15864486818a654 408 Pfam PF01551 Peptidase family M23 300 393 7.1E-32 T 12-10-2018 IPR016047 Peptidase M23 AMJ96_PC00411 b36f9756d6aef6ee5f6feeb806b0431b 1089 SUPERFAMILY SSF48208 585 1072 8.75E-36 T 12-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 AMJ96_PC00411 b36f9756d6aef6ee5f6feeb806b0431b 1089 Gene3D G3DSA:1.50.10.10 630 1054 4.9E-80 T 12-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 AMJ96_CH00785 c1c10eec4deab1c290152f5869d3edc6 201 Gene3D G3DSA:1.10.1740.10 31 103 3.3E-14 T 12-10-2018 AMJ96_CH00785 c1c10eec4deab1c290152f5869d3edc6 201 Pfam PF08281 Sigma-70, region 4 140 191 4.5E-15 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_CH00785 c1c10eec4deab1c290152f5869d3edc6 201 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 47 192 2.8E-18 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMJ96_CH00785 c1c10eec4deab1c290152f5869d3edc6 201 SUPERFAMILY SSF88946 45 117 5.1E-13 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH00785 c1c10eec4deab1c290152f5869d3edc6 201 SUPERFAMILY SSF88659 135 191 8.07E-15 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_CH00785 c1c10eec4deab1c290152f5869d3edc6 201 Gene3D G3DSA:1.10.10.10 138 195 3.2E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00785 c1c10eec4deab1c290152f5869d3edc6 201 Pfam PF04542 Sigma-70 region 2 47 110 5.2E-8 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH02018 89a2fcc9696076a08ceca34359a1d763 364 Gene3D G3DSA:3.50.50.60 97 364 3.8E-50 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02018 89a2fcc9696076a08ceca34359a1d763 364 Pfam PF01593 Flavin containing amine oxidoreductase 13 105 1.9E-16 T 12-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 AMJ96_CH02018 89a2fcc9696076a08ceca34359a1d763 364 Pfam PF01593 Flavin containing amine oxidoreductase 107 360 2.8E-28 T 12-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 AMJ96_CH02018 89a2fcc9696076a08ceca34359a1d763 364 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 9.7E-6 T 12-10-2018 AMJ96_CH02018 89a2fcc9696076a08ceca34359a1d763 364 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 328 343 9.7E-6 T 12-10-2018 AMJ96_CH02018 89a2fcc9696076a08ceca34359a1d763 364 SUPERFAMILY SSF54373 204 304 9.16E-23 T 12-10-2018 AMJ96_CH02018 89a2fcc9696076a08ceca34359a1d763 364 Gene3D G3DSA:3.50.50.60 6 41 1.1E-17 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02018 89a2fcc9696076a08ceca34359a1d763 364 Gene3D G3DSA:3.90.660.10 42 71 1.1E-17 T 12-10-2018 AMJ96_CH02018 89a2fcc9696076a08ceca34359a1d763 364 SUPERFAMILY SSF51905 1 361 2.73E-45 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02856 135f1ee492dcf17d7a43613cc29d1169 656 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 409 591 5.8E-30 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH02856 135f1ee492dcf17d7a43613cc29d1169 656 Pfam PF05226 CHASE2 domain 28 309 8.2E-38 T 12-10-2018 IPR007890 CHASE2 AMJ96_CH02856 135f1ee492dcf17d7a43613cc29d1169 656 SUPERFAMILY SSF55073 404 600 2.35E-57 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02856 135f1ee492dcf17d7a43613cc29d1169 656 SMART SM01080 40 314 1.4E-60 T 12-10-2018 IPR007890 CHASE2 AMJ96_CH02856 135f1ee492dcf17d7a43613cc29d1169 656 SMART SM00044 370 581 2.3E-14 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH02856 135f1ee492dcf17d7a43613cc29d1169 656 Gene3D G3DSA:3.30.70.1230 398 611 6.7E-64 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH04022 80d4593dbf2278bc35befb4242455f55 581 Gene3D G3DSA:2.60.120.10 431 569 2.7E-32 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH04022 80d4593dbf2278bc35befb4242455f55 581 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 512 529 - T 12-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site AMJ96_CH04022 80d4593dbf2278bc35befb4242455f55 581 Gene3D G3DSA:1.20.1530.20 5 399 3.2E-71 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily AMJ96_CH04022 80d4593dbf2278bc35befb4242455f55 581 Pfam PF00027 Cyclic nucleotide-binding domain 470 549 1.1E-18 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_CH04022 80d4593dbf2278bc35befb4242455f55 581 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 477 493 - T 12-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site AMJ96_CH04022 80d4593dbf2278bc35befb4242455f55 581 Pfam PF00999 Sodium/hydrogen exchanger family 15 390 2.8E-67 T 12-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMJ96_CH04022 80d4593dbf2278bc35befb4242455f55 581 SUPERFAMILY SSF51206 438 564 2.36E-30 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like AMJ96_CH04022 80d4593dbf2278bc35befb4242455f55 581 SMART SM00100 450 562 1.3E-19 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_CH00147 267f8b1c84d417516cc4409ee31cc3e9 121 Gene3D G3DSA:1.10.260.40 2 72 4.8E-16 T 12-10-2018 AMJ96_CH00147 267f8b1c84d417516cc4409ee31cc3e9 121 Pfam PF12844 Helix-turn-helix domain 10 72 4.4E-10 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH00147 267f8b1c84d417516cc4409ee31cc3e9 121 SUPERFAMILY SSF47413 2 71 4.29E-22 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH00147 267f8b1c84d417516cc4409ee31cc3e9 121 SMART SM00530 12 67 2.3E-10 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH01656 768d9e788f701408ef4cc0bbd2e28c34 227 Pfam PF00005 ABC transporter 26 174 3.0E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH01656 768d9e788f701408ef4cc0bbd2e28c34 227 SMART SM00382 35 223 9.4E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01656 768d9e788f701408ef4cc0bbd2e28c34 227 Gene3D G3DSA:3.40.50.300 4 227 1.2E-59 T 12-10-2018 AMJ96_CH01656 768d9e788f701408ef4cc0bbd2e28c34 227 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH01656 768d9e788f701408ef4cc0bbd2e28c34 227 SUPERFAMILY SSF52540 6 226 8.73E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02357 b32ca1841cca7c4b29c1525acdba662d 222 Gene3D G3DSA:1.10.3720.10 3 217 8.6E-46 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02357 b32ca1841cca7c4b29c1525acdba662d 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 15 111 1.2E-29 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_CH02357 b32ca1841cca7c4b29c1525acdba662d 222 SUPERFAMILY SSF161098 15 202 2.88E-39 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02357 b32ca1841cca7c4b29c1525acdba662d 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 40 215 9.4E-16 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH01421 56291dbaa7ef2a4a6352be19defb5375 482 Pfam PF13437 HlyD family secretion protein 322 413 4.9E-12 T 12-10-2018 AMJ96_CH01421 56291dbaa7ef2a4a6352be19defb5375 482 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 59 480 3.8E-93 T 12-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 AMJ96_CH01421 56291dbaa7ef2a4a6352be19defb5375 482 Gene3D G3DSA:2.40.50.100 98 132 1.9E-9 T 12-10-2018 AMJ96_CH01421 56291dbaa7ef2a4a6352be19defb5375 482 SUPERFAMILY SSF111369 100 162 4.18E-5 T 12-10-2018 AMJ96_CH01421 56291dbaa7ef2a4a6352be19defb5375 482 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 445 460 1.8E-34 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH01421 56291dbaa7ef2a4a6352be19defb5375 482 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 460 480 1.8E-34 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH01421 56291dbaa7ef2a4a6352be19defb5375 482 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 111 131 1.8E-34 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH01421 56291dbaa7ef2a4a6352be19defb5375 482 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 69 92 1.8E-34 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH01421 56291dbaa7ef2a4a6352be19defb5375 482 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 334 355 1.8E-34 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH01421 56291dbaa7ef2a4a6352be19defb5375 482 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 367 391 1.8E-34 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH01421 56291dbaa7ef2a4a6352be19defb5375 482 Gene3D G3DSA:2.40.30.170 339 463 7.1E-12 T 12-10-2018 AMJ96_CH01421 56291dbaa7ef2a4a6352be19defb5375 482 Gene3D G3DSA:1.10.287.470 133 214 1.9E-9 T 12-10-2018 AMJ96_CH01421 56291dbaa7ef2a4a6352be19defb5375 482 Gene3D G3DSA:2.40.30.170 87 97 1.9E-9 T 12-10-2018 AMJ96_CH04078 ac6bae7469ef7bfc56ca05ab9bfbb116 387 Gene3D G3DSA:3.40.630.10 15 370 4.4E-135 T 12-10-2018 AMJ96_CH04078 ac6bae7469ef7bfc56ca05ab9bfbb116 387 Pfam PF07687 Peptidase dimerisation domain 187 279 2.0E-12 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain AMJ96_CH04078 ac6bae7469ef7bfc56ca05ab9bfbb116 387 Pfam PF01546 Peptidase family M20/M25/M40 75 382 1.9E-38 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 AMJ96_CH04078 ac6bae7469ef7bfc56ca05ab9bfbb116 387 Gene3D G3DSA:3.30.70.360 183 297 4.4E-135 T 12-10-2018 AMJ96_CH04078 ac6bae7469ef7bfc56ca05ab9bfbb116 387 PIRSF PIRSF005962 2 387 2.3E-129 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 AMJ96_CH04078 ac6bae7469ef7bfc56ca05ab9bfbb116 387 SUPERFAMILY SSF53187 2 385 1.03E-86 T 12-10-2018 AMJ96_CH04078 ac6bae7469ef7bfc56ca05ab9bfbb116 387 SUPERFAMILY SSF55031 183 301 5.89E-32 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMJ96_CH04078 ac6bae7469ef7bfc56ca05ab9bfbb116 387 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 16 372 2.3E-108 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 AMJ96_CH00405 417c1c7bcf7651cea6aecb12ab815b71 967 Gene3D G3DSA:3.30.70.260 858 941 1.4E-7 T 12-10-2018 AMJ96_CH00405 417c1c7bcf7651cea6aecb12ab815b71 967 Pfam PF01909 Nucleotidyltransferase domain 119 181 1.3E-5 T 12-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 AMJ96_CH00405 417c1c7bcf7651cea6aecb12ab815b71 967 Pfam PF01842 ACT domain 862 913 8.6E-9 T 12-10-2018 IPR002912 ACT domain AMJ96_CH00405 417c1c7bcf7651cea6aecb12ab815b71 967 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 73 932 0.0 T 12-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 AMJ96_CH00405 417c1c7bcf7651cea6aecb12ab815b71 967 SUPERFAMILY SSF81593 239 352 1.73E-9 T 12-10-2018 AMJ96_CH00405 417c1c7bcf7651cea6aecb12ab815b71 967 PIRSF PIRSF006288 48 940 0.0 T 12-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 AMJ96_CH00405 417c1c7bcf7651cea6aecb12ab815b71 967 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 58 944 301.957 T 12-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 AMJ96_CH00405 417c1c7bcf7651cea6aecb12ab815b71 967 SMART SM00471 508 655 3.7E-8 T 12-10-2018 IPR003607 HD/PDEase domain AMJ96_CH00405 417c1c7bcf7651cea6aecb12ab815b71 967 SUPERFAMILY SSF55021 859 938 2.04E-14 T 12-10-2018 AMJ96_CH00405 417c1c7bcf7651cea6aecb12ab815b71 967 Pfam PF08335 GlnD PII-uridylyltransferase 227 365 6.2E-36 T 12-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 AMJ96_CH00405 417c1c7bcf7651cea6aecb12ab815b71 967 SUPERFAMILY SSF81301 56 220 3.27E-27 T 12-10-2018 AMJ96_CH00405 417c1c7bcf7651cea6aecb12ab815b71 967 Pfam PF01966 HD domain 512 626 1.4E-16 T 12-10-2018 IPR006674 HD domain AMJ96_CH00405 417c1c7bcf7651cea6aecb12ab815b71 967 SUPERFAMILY SSF81891 411 655 2.51E-22 T 12-10-2018 AMJ96_CH00405 417c1c7bcf7651cea6aecb12ab815b71 967 Gene3D G3DSA:1.10.3210.10 496 640 1.5E-11 T 12-10-2018 AMJ96_CH00405 417c1c7bcf7651cea6aecb12ab815b71 967 SUPERFAMILY SSF55021 749 810 5.83E-11 T 12-10-2018 AMJ96_PC00117 f13087e50bc1968d5b0297c41975a26a 249 SMART SM00895 108 231 2.0E-11 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PC00117 f13087e50bc1968d5b0297c41975a26a 249 SUPERFAMILY SSF48008 104 240 4.97E-18 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PC00117 f13087e50bc1968d5b0297c41975a26a 249 SMART SM00345 40 98 4.2E-11 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00117 f13087e50bc1968d5b0297c41975a26a 249 Pfam PF07729 FCD domain 108 230 1.8E-17 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PC00117 f13087e50bc1968d5b0297c41975a26a 249 SUPERFAMILY SSF46785 38 102 9.1E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00117 f13087e50bc1968d5b0297c41975a26a 249 Gene3D G3DSA:1.10.10.10 25 99 7.4E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00117 f13087e50bc1968d5b0297c41975a26a 249 Pfam PF00392 Bacterial regulatory proteins, gntR family 39 98 3.5E-14 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00117 f13087e50bc1968d5b0297c41975a26a 249 Gene3D G3DSA:1.20.120.530 102 246 6.5E-16 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH03856 4f84c20ed319d0260e139f3fd87380d3 288 Gene3D G3DSA:1.25.40.10 109 172 1.9E-18 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03856 4f84c20ed319d0260e139f3fd87380d3 288 SUPERFAMILY SSF48439 46 271 4.71E-46 T 12-10-2018 AMJ96_CH03856 4f84c20ed319d0260e139f3fd87380d3 288 Pfam PF13181 Tetratricopeptide repeat 240 272 7.1E-5 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH03856 4f84c20ed319d0260e139f3fd87380d3 288 Pfam PF13181 Tetratricopeptide repeat 71 101 0.029 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH03856 4f84c20ed319d0260e139f3fd87380d3 288 Pfam PF13181 Tetratricopeptide repeat 209 237 0.087 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH03856 4f84c20ed319d0260e139f3fd87380d3 288 Gene3D G3DSA:1.25.40.10 173 286 1.9E-26 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03856 4f84c20ed319d0260e139f3fd87380d3 288 Gene3D G3DSA:1.25.40.10 43 108 1.9E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03856 4f84c20ed319d0260e139f3fd87380d3 288 SMART SM00028 172 205 1.5E-7 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH03856 4f84c20ed319d0260e139f3fd87380d3 288 SMART SM00028 104 137 2.9E-7 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH03856 4f84c20ed319d0260e139f3fd87380d3 288 SMART SM00028 206 239 0.045 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH03856 4f84c20ed319d0260e139f3fd87380d3 288 SMART SM00028 70 103 7.5E-5 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH03856 4f84c20ed319d0260e139f3fd87380d3 288 SMART SM00028 240 273 2.2E-4 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH03856 4f84c20ed319d0260e139f3fd87380d3 288 SMART SM00028 138 171 0.61 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH03856 4f84c20ed319d0260e139f3fd87380d3 288 Pfam PF00515 Tetratricopeptide repeat 105 137 5.3E-9 T 12-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 AMJ96_CH03856 4f84c20ed319d0260e139f3fd87380d3 288 Pfam PF00515 Tetratricopeptide repeat 173 204 1.7E-9 T 12-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 AMJ96_CH00864 92a766029d7396cf9ffef9ec863db024 269 PRINTS PR00377 Inositol monophosphatase superfamily signature 45 65 9.0E-11 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH00864 92a766029d7396cf9ffef9ec863db024 269 PRINTS PR00377 Inositol monophosphatase superfamily signature 67 83 9.0E-11 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH00864 92a766029d7396cf9ffef9ec863db024 269 PRINTS PR00377 Inositol monophosphatase superfamily signature 89 105 9.0E-11 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH00864 92a766029d7396cf9ffef9ec863db024 269 PRINTS PR00377 Inositol monophosphatase superfamily signature 209 233 9.0E-11 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH00864 92a766029d7396cf9ffef9ec863db024 269 Gene3D G3DSA:3.40.190.80 150 264 2.3E-13 T 12-10-2018 AMJ96_CH00864 92a766029d7396cf9ffef9ec863db024 269 SUPERFAMILY SSF56655 9 262 5.1E-61 T 12-10-2018 AMJ96_CH00864 92a766029d7396cf9ffef9ec863db024 269 Gene3D G3DSA:3.30.540.10 6 146 3.5E-37 T 12-10-2018 AMJ96_CH00864 92a766029d7396cf9ffef9ec863db024 269 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 212 226 - T 12-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 AMJ96_CH00864 92a766029d7396cf9ffef9ec863db024 269 Pfam PF00459 Inositol monophosphatase family 18 243 4.2E-38 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH02495 3ec6443808b24b1c3ebecbfedf8cbd0b 63 Pfam PF00296 Luciferase-like monooxygenase 1 60 7.0E-5 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMJ96_CH02495 3ec6443808b24b1c3ebecbfedf8cbd0b 63 Gene3D G3DSA:3.20.20.30 1 63 1.0E-13 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_CH01437 20c1e8fc29c579806ee118eaf11dcf25 161 SUPERFAMILY SSF52172 42 158 9.96E-18 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH01437 20c1e8fc29c579806ee118eaf11dcf25 161 SMART SM00448 45 156 5.8E-5 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01437 20c1e8fc29c579806ee118eaf11dcf25 161 Pfam PF00072 Response regulator receiver domain 47 149 2.0E-6 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01437 20c1e8fc29c579806ee118eaf11dcf25 161 Gene3D G3DSA:3.40.50.2300 41 160 5.3E-29 T 12-10-2018 AMJ96_CH01416 db1965a1658c8a09b86a2bdfa00fcb74 411 Gene3D G3DSA:3.40.50.300 22 249 2.7E-69 T 12-10-2018 AMJ96_CH01416 db1965a1658c8a09b86a2bdfa00fcb74 411 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 278 393 7.4E-29 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AMJ96_CH01416 db1965a1658c8a09b86a2bdfa00fcb74 411 Gene3D G3DSA:3.30.1220.10 262 393 1.1E-5 T 12-10-2018 IPR036627 CobW-like, C-terminal domain superfamily AMJ96_CH01416 db1965a1658c8a09b86a2bdfa00fcb74 411 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 25 229 7.3E-53 T 12-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH01416 db1965a1658c8a09b86a2bdfa00fcb74 411 SMART SM00833 278 393 1.3E-51 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AMJ96_CH01416 db1965a1658c8a09b86a2bdfa00fcb74 411 SUPERFAMILY SSF52540 11 336 7.97E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02512 929d95686abefe15d29ea53725efeeb4 427 Gene3D G3DSA:1.20.1720.10 29 403 1.2E-75 T 12-10-2018 AMJ96_CH02512 929d95686abefe15d29ea53725efeeb4 427 SUPERFAMILY SSF103473 28 409 6.93E-52 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH02512 929d95686abefe15d29ea53725efeeb4 427 Pfam PF07690 Major Facilitator Superfamily 31 369 1.5E-34 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH02512 929d95686abefe15d29ea53725efeeb4 427 ProSitePatterns PS00216 Sugar transport proteins signature 1. 81 97 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMJ96_CH02512 929d95686abefe15d29ea53725efeeb4 427 PRINTS PR01035 Tetracycline resistance protein signature 37 53 1.3E-6 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH02512 929d95686abefe15d29ea53725efeeb4 427 PRINTS PR01035 Tetracycline resistance protein signature 151 173 1.3E-6 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH02512 929d95686abefe15d29ea53725efeeb4 427 PRINTS PR01035 Tetracycline resistance protein signature 350 373 1.3E-6 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH00424 ca763443985a764939c4312651d3d196 303 SUPERFAMILY SSF103481 47 146 2.75E-12 T 12-10-2018 AMJ96_CH00424 ca763443985a764939c4312651d3d196 303 Pfam PF00892 EamA-like transporter family 160 293 2.6E-15 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH00424 ca763443985a764939c4312651d3d196 303 Pfam PF00892 EamA-like transporter family 15 146 1.5E-23 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH00424 ca763443985a764939c4312651d3d196 303 SUPERFAMILY SSF103481 195 296 3.4E-12 T 12-10-2018 AMJ96_CH02912 590935e9a5ab1fabde6ac39744d2d2b8 238 Pfam PF13419 Haloacid dehalogenase-like hydrolase 21 197 5.7E-22 T 12-10-2018 AMJ96_CH02912 590935e9a5ab1fabde6ac39744d2d2b8 238 SUPERFAMILY SSF56784 18 232 3.48E-49 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_CH02912 590935e9a5ab1fabde6ac39744d2d2b8 238 Gene3D G3DSA:3.40.50.1000 21 217 1.7E-54 T 12-10-2018 IPR023214 HAD superfamily AMJ96_CH02912 590935e9a5ab1fabde6ac39744d2d2b8 238 Gene3D G3DSA:1.10.150.240 33 99 1.7E-54 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMJ96_CH02912 590935e9a5ab1fabde6ac39744d2d2b8 238 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 92 197 1.9E-13 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH00310 9ec5aa040392577cad390a6bbb917044 520 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 520 54.164 T 12-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 AMJ96_CH00310 9ec5aa040392577cad390a6bbb917044 520 Gene3D G3DSA:3.40.50.620 205 400 2.7E-76 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH00310 9ec5aa040392577cad390a6bbb917044 520 SUPERFAMILY SSF54810 400 520 4.58E-51 T 12-10-2018 AMJ96_CH00310 9ec5aa040392577cad390a6bbb917044 520 Gene3D G3DSA:3.40.50.880 7 204 1.0E-50 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH00310 9ec5aa040392577cad390a6bbb917044 520 Gene3D G3DSA:3.30.300.10 401 520 1.4E-51 T 12-10-2018 AMJ96_CH00310 9ec5aa040392577cad390a6bbb917044 520 SUPERFAMILY SSF52402 192 413 1.23E-58 T 12-10-2018 AMJ96_CH00310 9ec5aa040392577cad390a6bbb917044 520 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 199 1.1E-70 T 12-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AMJ96_CH00310 9ec5aa040392577cad390a6bbb917044 520 Pfam PF03054 tRNA methyl transferase 223 252 1.8E-5 T 12-10-2018 AMJ96_CH00310 9ec5aa040392577cad390a6bbb917044 520 SUPERFAMILY SSF52317 8 232 1.89E-55 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH00310 9ec5aa040392577cad390a6bbb917044 520 Pfam PF00958 GMP synthase C terminal domain 428 519 1.5E-42 T 12-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AMJ96_CH00310 9ec5aa040392577cad390a6bbb917044 520 PRINTS PR00096 Glutamine amidotransferase superfamily signature 172 185 1.9E-7 T 12-10-2018 AMJ96_CH00310 9ec5aa040392577cad390a6bbb917044 520 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 1.9E-7 T 12-10-2018 AMJ96_CH00310 9ec5aa040392577cad390a6bbb917044 520 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 1.9E-7 T 12-10-2018 AMJ96_CH00310 9ec5aa040392577cad390a6bbb917044 520 PRINTS PR00097 Anthranilate synthase component II signature 172 185 5.0E-5 T 12-10-2018 AMJ96_CH00310 9ec5aa040392577cad390a6bbb917044 520 PRINTS PR00097 Anthranilate synthase component II signature 81 92 5.0E-5 T 12-10-2018 AMJ96_CH00310 9ec5aa040392577cad390a6bbb917044 520 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 210 520 4.3E-145 T 12-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AMJ96_CH00310 9ec5aa040392577cad390a6bbb917044 520 Pfam PF00117 Glutamine amidotransferase class-I 12 194 1.3E-37 T 12-10-2018 IPR017926 Glutamine amidotransferase AMJ96_PA00117 15c00cdf446cc6c6a4d48a4563829cb1 620 SUPERFAMILY SSF52540 362 607 3.94E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00117 15c00cdf446cc6c6a4d48a4563829cb1 620 SUPERFAMILY SSF90123 40 352 2.49E-73 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_PA00117 15c00cdf446cc6c6a4d48a4563829cb1 620 Pfam PF00005 ABC transporter 387 536 6.9E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00117 15c00cdf446cc6c6a4d48a4563829cb1 620 ProSitePatterns PS00211 ABC transporters family signature. 508 522 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PA00117 15c00cdf446cc6c6a4d48a4563829cb1 620 Gene3D G3DSA:1.20.1560.10 34 355 2.5E-78 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_PA00117 15c00cdf446cc6c6a4d48a4563829cb1 620 Gene3D G3DSA:3.40.50.300 361 609 6.1E-90 T 12-10-2018 AMJ96_PA00117 15c00cdf446cc6c6a4d48a4563829cb1 620 TIGRFAM TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein 35 607 3.3E-242 T 12-10-2018 IPR011918 ABC transporter, ATP-binding/permease protein AMJ96_PA00117 15c00cdf446cc6c6a4d48a4563829cb1 620 Pfam PF00664 ABC transporter transmembrane region 53 317 1.8E-52 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_PA00117 15c00cdf446cc6c6a4d48a4563829cb1 620 SMART SM00382 396 582 5.2E-20 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01207 52ab10055ce3afd4bc157bf9161073e3 541 ProSitePatterns PS00697 ATP-dependent DNA ligase AMP-binding site. 228 236 - T 12-10-2018 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 AMJ96_CH01207 52ab10055ce3afd4bc157bf9161073e3 541 Pfam PF04675 DNA ligase N terminus 3 160 5.8E-9 T 12-10-2018 IPR012308 DNA ligase, ATP-dependent, N-terminal GO:0003677|GO:0003910|GO:0006281|GO:0006310 AMJ96_CH01207 52ab10055ce3afd4bc157bf9161073e3 541 SUPERFAMILY SSF56091 203 403 7.19E-47 T 12-10-2018 AMJ96_CH01207 52ab10055ce3afd4bc157bf9161073e3 541 Gene3D G3DSA:3.30.470.30 205 403 3.6E-39 T 12-10-2018 AMJ96_CH01207 52ab10055ce3afd4bc157bf9161073e3 541 SUPERFAMILY SSF50249 408 537 1.22E-29 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH01207 52ab10055ce3afd4bc157bf9161073e3 541 TIGRFAM TIGR04120 DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family 2 536 6.4E-249 T 12-10-2018 IPR026333 ATP-dependent DNA ligase, PP_1105 family AMJ96_CH01207 52ab10055ce3afd4bc157bf9161073e3 541 Pfam PF01068 ATP dependent DNA ligase domain 207 403 3.3E-27 T 12-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 AMJ96_CH01207 52ab10055ce3afd4bc157bf9161073e3 541 Pfam PF04679 ATP dependent DNA ligase C terminal region 424 521 1.1E-11 T 12-10-2018 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 AMJ96_CH01207 52ab10055ce3afd4bc157bf9161073e3 541 Gene3D G3DSA:2.40.50.140 407 540 2.8E-29 T 12-10-2018 AMJ96_CH00588 a355535e6c0e09332647f2fc9ef9906f 653 Pfam PF00563 EAL domain 406 628 3.6E-66 T 12-10-2018 IPR001633 EAL domain AMJ96_CH00588 a355535e6c0e09332647f2fc9ef9906f 653 Gene3D G3DSA:3.30.70.270 219 395 1.9E-41 T 12-10-2018 AMJ96_CH00588 a355535e6c0e09332647f2fc9ef9906f 653 SMART SM00052 391 633 1.3E-80 T 12-10-2018 IPR001633 EAL domain AMJ96_CH00588 a355535e6c0e09332647f2fc9ef9906f 653 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 221 379 1.3E-28 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH00588 a355535e6c0e09332647f2fc9ef9906f 653 SUPERFAMILY SSF141868 406 638 3.66E-75 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH00588 a355535e6c0e09332647f2fc9ef9906f 653 SUPERFAMILY SSF55073 227 382 3.69E-36 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH00588 a355535e6c0e09332647f2fc9ef9906f 653 SMART SM00267 207 381 1.8E-40 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH00588 a355535e6c0e09332647f2fc9ef9906f 653 Pfam PF00990 Diguanylate cyclase, GGDEF domain 222 374 6.0E-33 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH00588 a355535e6c0e09332647f2fc9ef9906f 653 Gene3D G3DSA:3.20.20.450 396 650 5.3E-79 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH02352 42e27a69aa2c908b6676ea25caf13a45 122 Gene3D G3DSA:3.30.429.10 2 121 4.9E-24 T 12-10-2018 IPR014347 Tautomerase/MIF superfamily AMJ96_CH02352 42e27a69aa2c908b6676ea25caf13a45 122 SUPERFAMILY SSF55331 2 118 1.14E-27 T 12-10-2018 IPR014347 Tautomerase/MIF superfamily AMJ96_CH00356 69776bc1f6aead2d849886e107585ef5 402 Pfam PF02441 Flavoprotein 6 176 3.3E-43 T 12-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AMJ96_CH00356 69776bc1f6aead2d849886e107585ef5 402 Gene3D G3DSA:3.40.50.10300 185 402 5.8E-74 T 12-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AMJ96_CH00356 69776bc1f6aead2d849886e107585ef5 402 SUPERFAMILY SSF102645 186 400 1.01E-73 T 12-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AMJ96_CH00356 69776bc1f6aead2d849886e107585ef5 402 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 4 394 1.1E-122 T 12-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 AMJ96_CH00356 69776bc1f6aead2d849886e107585ef5 402 SUPERFAMILY SSF52507 3 180 1.31E-58 T 12-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 AMJ96_CH00356 69776bc1f6aead2d849886e107585ef5 402 Gene3D G3DSA:3.40.50.1950 1 184 7.1E-56 T 12-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 AMJ96_CH00356 69776bc1f6aead2d849886e107585ef5 402 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 188 372 5.3E-69 T 12-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AMJ96_CH00365 5850fa918177362991698da267cf38bc 459 SUPERFAMILY SSF51338 6 447 4.18E-19 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH00365 5850fa918177362991698da267cf38bc 459 SUPERFAMILY SSF51556 55 376 9.23E-74 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_CH00365 5850fa918177362991698da267cf38bc 459 Pfam PF01979 Amidohydrolase family 52 411 1.4E-16 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMJ96_CH00365 5850fa918177362991698da267cf38bc 459 Gene3D G3DSA:3.20.20.140 55 417 2.6E-110 T 12-10-2018 AMJ96_CH00365 5850fa918177362991698da267cf38bc 459 Gene3D G3DSA:2.30.40.10 6 446 2.6E-110 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH04379 10fe2de2af8c09477ed0f85b667b02a5 437 SUPERFAMILY SSF52540 71 356 2.5E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04379 10fe2de2af8c09477ed0f85b667b02a5 437 Pfam PF01926 50S ribosome-binding GTPase 218 307 5.0E-21 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 AMJ96_CH04379 10fe2de2af8c09477ed0f85b667b02a5 437 Gene3D G3DSA:3.30.1360.120 1 120 8.7E-36 T 12-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMJ96_CH04379 10fe2de2af8c09477ed0f85b667b02a5 437 Pfam PF12631 MnmE helical domain 122 434 1.5E-49 T 12-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 AMJ96_CH04379 10fe2de2af8c09477ed0f85b667b02a5 437 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 4 437 30.222 T 12-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 AMJ96_CH04379 10fe2de2af8c09477ed0f85b667b02a5 437 Gene3D G3DSA:1.20.120.430 121 437 2.4E-96 T 12-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 AMJ96_CH04379 10fe2de2af8c09477ed0f85b667b02a5 437 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 217 337 1.1E-21 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMJ96_CH04379 10fe2de2af8c09477ed0f85b667b02a5 437 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 17 437 2.3E-83 T 12-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 AMJ96_CH04379 10fe2de2af8c09477ed0f85b667b02a5 437 Pfam PF10396 GTP-binding protein TrmE N-terminus 5 119 3.1E-32 T 12-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 AMJ96_CH04379 10fe2de2af8c09477ed0f85b667b02a5 437 Gene3D G3DSA:3.40.50.300 217 367 2.4E-96 T 12-10-2018 AMJ96_CH04379 10fe2de2af8c09477ed0f85b667b02a5 437 SUPERFAMILY SSF116878 120 437 9.68E-47 T 12-10-2018 AMJ96_CH04379 10fe2de2af8c09477ed0f85b667b02a5 437 PRINTS PR00449 Transforming protein P21 ras signature 217 238 1.5E-8 T 12-10-2018 AMJ96_CH04379 10fe2de2af8c09477ed0f85b667b02a5 437 PRINTS PR00449 Transforming protein P21 ras signature 257 279 1.5E-8 T 12-10-2018 AMJ96_CH04379 10fe2de2af8c09477ed0f85b667b02a5 437 PRINTS PR00449 Transforming protein P21 ras signature 316 329 1.5E-8 T 12-10-2018 AMJ96_CH02096 853e740d25ff79ac4c57b65a71fa90fe 275 SUPERFAMILY SSF52540 20 234 5.32E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02096 853e740d25ff79ac4c57b65a71fa90fe 275 Pfam PF00005 ABC transporter 36 179 1.2E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02096 853e740d25ff79ac4c57b65a71fa90fe 275 SMART SM00382 45 228 5.8E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02096 853e740d25ff79ac4c57b65a71fa90fe 275 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02096 853e740d25ff79ac4c57b65a71fa90fe 275 Gene3D G3DSA:3.40.50.300 17 269 4.8E-61 T 12-10-2018 AMJ96_PC00338 e3290a5d2e59908efdf4be924cb52ae9 286 Gene3D G3DSA:3.20.20.150 4 277 5.2E-37 T 12-10-2018 AMJ96_PC00338 e3290a5d2e59908efdf4be924cb52ae9 286 SUPERFAMILY SSF51658 3 281 1.31E-29 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_PC00338 e3290a5d2e59908efdf4be924cb52ae9 286 Pfam PF01261 Xylose isomerase-like TIM barrel 78 202 1.2E-12 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMJ96_PC00427 bed1faa48a80b830f5a31f5f1b377a6f 228 Pfam PF01493 GXGXG motif 42 188 6.4E-13 T 12-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 AMJ96_PC00427 bed1faa48a80b830f5a31f5f1b377a6f 228 PIRSF PIRSF006519 1 228 6.5E-86 T 12-10-2018 IPR012061 Glutamate synthase, large subunit domain 3 stand-alone protein AMJ96_PC00427 bed1faa48a80b830f5a31f5f1b377a6f 228 Gene3D G3DSA:2.160.20.60 24 215 3.2E-16 T 12-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 AMJ96_PC00427 bed1faa48a80b830f5a31f5f1b377a6f 228 SUPERFAMILY SSF69336 4 206 7.19E-45 T 12-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 AMJ96_CH00132 0fcc03b616557e909683b10be8e5a05c 136 Pfam PF01230 HIT domain 10 100 8.2E-15 T 12-10-2018 IPR001310 Histidine triad (HIT) protein AMJ96_CH00132 0fcc03b616557e909683b10be8e5a05c 136 Gene3D G3DSA:3.30.428.10 3 136 5.3E-39 T 12-10-2018 IPR036265 HIT-like superfamily AMJ96_CH00132 0fcc03b616557e909683b10be8e5a05c 136 PIRSF PIRSF000714 3 136 7.3E-47 T 12-10-2018 IPR026026 Histidine triad hydrolase, Hint-type AMJ96_CH00132 0fcc03b616557e909683b10be8e5a05c 136 SUPERFAMILY SSF54197 10 135 7.83E-34 T 12-10-2018 IPR036265 HIT-like superfamily AMJ96_CH00213 5d5e5f8783f14a11219046e6499de803 425 SUPERFAMILY SSF52540 166 407 2.5E-32 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00213 5d5e5f8783f14a11219046e6499de803 425 SUPERFAMILY SSF52172 82 155 3.69E-5 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH00213 5d5e5f8783f14a11219046e6499de803 425 Gene3D G3DSA:3.40.50.2300 34 161 2.6E-39 T 12-10-2018 AMJ96_CH00213 5d5e5f8783f14a11219046e6499de803 425 Gene3D G3DSA:3.40.50.300 165 406 1.3E-43 T 12-10-2018 AMJ96_CH00480 bd20366e779ad09090889ad56216ceca 193 Gene3D G3DSA:1.10.357.10 52 181 5.7E-27 T 12-10-2018 AMJ96_CH00480 bd20366e779ad09090889ad56216ceca 193 SUPERFAMILY SSF46689 3 73 1.49E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH00480 bd20366e779ad09090889ad56216ceca 193 Gene3D G3DSA:1.10.10.60 5 51 1.6E-20 T 12-10-2018 AMJ96_CH00480 bd20366e779ad09090889ad56216ceca 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 60 3.9E-16 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00480 bd20366e779ad09090889ad56216ceca 193 SUPERFAMILY SSF48498 78 180 5.34E-21 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH00480 bd20366e779ad09090889ad56216ceca 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 1.3E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00480 bd20366e779ad09090889ad56216ceca 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 1.3E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH03198 73880a61d206fe2c49f577879bfb0259 310 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 98 285 5.4E-6 T 12-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase AMJ96_CH03198 73880a61d206fe2c49f577879bfb0259 310 SUPERFAMILY SSF56219 86 306 1.16E-22 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMJ96_CH03198 73880a61d206fe2c49f577879bfb0259 310 Gene3D G3DSA:3.60.10.10 95 309 1.5E-20 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMJ96_CH01176 df9d9c24d8ee9415354a99a5f506280d 244 Pfam PF00440 Bacterial regulatory proteins, tetR family 9 54 1.0E-15 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH01176 df9d9c24d8ee9415354a99a5f506280d 244 SUPERFAMILY SSF46689 4 81 1.95E-18 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH01176 df9d9c24d8ee9415354a99a5f506280d 244 TIGRFAM TIGR03384 betaine_BetI: transcriptional repressor BetI 1 185 3.1E-70 T 12-10-2018 IPR017757 Transcriptional repressor BetI AMJ96_CH01176 df9d9c24d8ee9415354a99a5f506280d 244 Hamap MF_00768 HTH-type transcriptional regulator BetI [betI]. 1 192 96.055 T 12-10-2018 IPR017757 Transcriptional repressor BetI AMJ96_CH01176 df9d9c24d8ee9415354a99a5f506280d 244 ProSitePatterns PS01081 TetR-type HTH domain signature. 21 52 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMJ96_CH01176 df9d9c24d8ee9415354a99a5f506280d 244 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 9 22 3.7E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH01176 df9d9c24d8ee9415354a99a5f506280d 244 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 53 3.7E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH01176 df9d9c24d8ee9415354a99a5f506280d 244 SUPERFAMILY SSF48498 75 187 1.33E-16 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH01176 df9d9c24d8ee9415354a99a5f506280d 244 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 77 186 7.9E-26 T 12-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal AMJ96_CH01176 df9d9c24d8ee9415354a99a5f506280d 244 Gene3D G3DSA:1.10.357.10 1 197 5.2E-41 T 12-10-2018 AMJ96_CH03466 93b85f6bf78c3dd86abc4e5b57780d02 439 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 374 427 1.6E-13 T 12-10-2018 IPR006260 TonB/TolA, C-terminal AMJ96_CH03466 93b85f6bf78c3dd86abc4e5b57780d02 439 Gene3D G3DSA:3.30.1150.10 269 438 3.2E-18 T 12-10-2018 AMJ96_CH03466 93b85f6bf78c3dd86abc4e5b57780d02 439 Pfam PF13103 TonB C terminal 356 433 9.7E-10 T 12-10-2018 AMJ96_CH03466 93b85f6bf78c3dd86abc4e5b57780d02 439 SUPERFAMILY SSF74653 291 427 3.66E-12 T 12-10-2018 AMJ96_CH00663 cbbbdccfe61508ad6994035f9eab0b0a 531 Pfam PF00072 Response regulator receiver domain 388 509 7.8E-19 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00663 cbbbdccfe61508ad6994035f9eab0b0a 531 Pfam PF00072 Response regulator receiver domain 7 118 2.5E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00663 cbbbdccfe61508ad6994035f9eab0b0a 531 SUPERFAMILY SSF52172 388 513 6.97E-29 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH00663 cbbbdccfe61508ad6994035f9eab0b0a 531 SMART SM00448 5 119 1.4E-20 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00663 cbbbdccfe61508ad6994035f9eab0b0a 531 SMART SM00448 386 509 4.9E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00663 cbbbdccfe61508ad6994035f9eab0b0a 531 Gene3D G3DSA:1.10.287.130 130 205 1.8E-10 T 12-10-2018 AMJ96_CH00663 cbbbdccfe61508ad6994035f9eab0b0a 531 Gene3D G3DSA:3.40.50.2300 384 519 5.4E-32 T 12-10-2018 AMJ96_CH00663 cbbbdccfe61508ad6994035f9eab0b0a 531 Gene3D G3DSA:3.40.50.2300 3 128 9.4E-27 T 12-10-2018 AMJ96_CH00663 cbbbdccfe61508ad6994035f9eab0b0a 531 SUPERFAMILY SSF55874 212 355 5.24E-40 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00663 cbbbdccfe61508ad6994035f9eab0b0a 531 SUPERFAMILY SSF52172 5 161 1.85E-29 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH00663 cbbbdccfe61508ad6994035f9eab0b0a 531 Pfam PF00512 His Kinase A (phospho-acceptor) domain 140 204 2.1E-7 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH00663 cbbbdccfe61508ad6994035f9eab0b0a 531 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 247 355 3.0E-25 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00663 cbbbdccfe61508ad6994035f9eab0b0a 531 PRINTS PR00344 Bacterial sensor protein C-terminal signature 303 313 1.4E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00663 cbbbdccfe61508ad6994035f9eab0b0a 531 PRINTS PR00344 Bacterial sensor protein C-terminal signature 285 299 1.4E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00663 cbbbdccfe61508ad6994035f9eab0b0a 531 PRINTS PR00344 Bacterial sensor protein C-terminal signature 317 335 1.4E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00663 cbbbdccfe61508ad6994035f9eab0b0a 531 PRINTS PR00344 Bacterial sensor protein C-terminal signature 341 354 1.4E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00663 cbbbdccfe61508ad6994035f9eab0b0a 531 SMART SM00387 247 357 6.4E-38 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00663 cbbbdccfe61508ad6994035f9eab0b0a 531 Gene3D G3DSA:3.30.565.10 211 358 5.6E-41 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00663 cbbbdccfe61508ad6994035f9eab0b0a 531 SMART SM00388 139 205 1.7E-8 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH01962 58a55a38747d56d748b5aa80be86bcee 396 Gene3D G3DSA:3.90.1150.10 259 393 7.2E-37 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH01962 58a55a38747d56d748b5aa80be86bcee 396 PIRSF PIRSF001434 1 394 6.3E-118 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMJ96_CH01962 58a55a38747d56d748b5aa80be86bcee 396 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 15 390 5.4E-101 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMJ96_CH01962 58a55a38747d56d748b5aa80be86bcee 396 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 15 392 3.2E-179 T 12-10-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 AMJ96_CH01962 58a55a38747d56d748b5aa80be86bcee 396 Gene3D G3DSA:3.40.640.10 10 258 1.3E-70 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH01962 58a55a38747d56d748b5aa80be86bcee 396 SUPERFAMILY SSF53383 47 391 1.51E-89 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH02980 58c4236a44b1cbc9b5bd0ffa7d4bb2d8 402 Gene3D G3DSA:2.40.420.20 320 387 7.2E-57 T 12-10-2018 AMJ96_CH02980 58c4236a44b1cbc9b5bd0ffa7d4bb2d8 402 SUPERFAMILY SSF111369 102 312 1.7E-28 T 12-10-2018 AMJ96_CH02980 58c4236a44b1cbc9b5bd0ffa7d4bb2d8 402 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 109 308 2.1E-29 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMJ96_CH02980 58c4236a44b1cbc9b5bd0ffa7d4bb2d8 402 Gene3D G3DSA:2.40.50.100 111 237 7.2E-57 T 12-10-2018 AMJ96_CH02980 58c4236a44b1cbc9b5bd0ffa7d4bb2d8 402 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 87 389 1.8E-67 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMJ96_CH02980 58c4236a44b1cbc9b5bd0ffa7d4bb2d8 402 Gene3D G3DSA:1.10.287.470 146 203 7.2E-57 T 12-10-2018 AMJ96_CH02980 58c4236a44b1cbc9b5bd0ffa7d4bb2d8 402 Gene3D G3DSA:2.40.30.170 99 319 7.2E-57 T 12-10-2018 AMJ96_CH01678 181c4b873f5e1585edaf40f1aac65b3b 394 SMART SM00646 229 383 6.2E-41 T 12-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AMJ96_CH01678 181c4b873f5e1585edaf40f1aac65b3b 394 SUPERFAMILY SSF53187 166 385 2.26E-49 T 12-10-2018 AMJ96_CH01678 181c4b873f5e1585edaf40f1aac65b3b 394 Gene3D G3DSA:3.40.630.40 164 390 2.4E-66 T 12-10-2018 AMJ96_CH01678 181c4b873f5e1585edaf40f1aac65b3b 394 Gene3D G3DSA:2.60.40.3500 17 126 2.6E-19 T 12-10-2018 AMJ96_CH01678 181c4b873f5e1585edaf40f1aac65b3b 394 Pfam PF11741 AMIN domain 27 114 1.4E-11 T 12-10-2018 IPR021731 AMIN domain AMJ96_CH01678 181c4b873f5e1585edaf40f1aac65b3b 394 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 168 383 4.7E-44 T 12-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AMJ96_PC00110 5631025768bb3b04f9405ba0f0d028e4 337 SUPERFAMILY SSF46785 7 82 6.71E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00110 5631025768bb3b04f9405ba0f0d028e4 337 Gene3D G3DSA:1.10.10.10 2 81 8.4E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00110 5631025768bb3b04f9405ba0f0d028e4 337 Pfam PF16864 Dimerisation domain 9 88 8.1E-16 T 12-10-2018 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain AMJ96_PC00110 5631025768bb3b04f9405ba0f0d028e4 337 SUPERFAMILY SSF53335 90 331 2.15E-46 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_PC00110 5631025768bb3b04f9405ba0f0d028e4 337 Gene3D G3DSA:3.40.50.150 88 335 1.3E-59 T 12-10-2018 AMJ96_PC00110 5631025768bb3b04f9405ba0f0d028e4 337 PIRSF PIRSF005739 4 336 2.0E-31 T 12-10-2018 IPR016461 O-methyltransferase COMT-type GO:0008168 AMJ96_PC00110 5631025768bb3b04f9405ba0f0d028e4 337 Pfam PF00891 O-methyltransferase 99 319 1.6E-34 T 12-10-2018 IPR001077 O-methyltransferase, family 2 GO:0008171 AMJ96_PD00506 fe3beb03840dd478877f6ffebf608047 236 Gene3D G3DSA:1.10.1740.10 12 126 5.3E-29 T 12-10-2018 AMJ96_PD00506 fe3beb03840dd478877f6ffebf608047 236 SUPERFAMILY SSF88659 134 203 3.36E-16 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_PD00506 fe3beb03840dd478877f6ffebf608047 236 Pfam PF08281 Sigma-70, region 4 146 198 2.8E-15 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_PD00506 fe3beb03840dd478877f6ffebf608047 236 Pfam PF04542 Sigma-70 region 2 39 105 4.1E-14 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_PD00506 fe3beb03840dd478877f6ffebf608047 236 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 34 200 2.7E-28 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMJ96_PD00506 fe3beb03840dd478877f6ffebf608047 236 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 60 91 - T 12-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_PD00506 fe3beb03840dd478877f6ffebf608047 236 SUPERFAMILY SSF88946 16 115 6.54E-25 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_PD00506 fe3beb03840dd478877f6ffebf608047 236 Gene3D G3DSA:1.10.10.10 127 206 1.7E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00097 a1654d1ae57be41ab8be9fd4ea08b1ad 208 Gene3D G3DSA:3.30.420.10 5 193 1.3E-43 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_CH00097 a1654d1ae57be41ab8be9fd4ea08b1ad 208 SUPERFAMILY SSF53098 14 195 1.52E-50 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_CH00097 a1654d1ae57be41ab8be9fd4ea08b1ad 208 SMART SM00474 2 173 6.1E-33 T 12-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMJ96_CH00097 a1654d1ae57be41ab8be9fd4ea08b1ad 208 Pfam PF01612 3'-5' exonuclease 22 172 1.4E-32 T 12-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMJ96_CH00368 ed39f69dc0f389463355d3789a6e7d81 258 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 21 257 37.543 T 12-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AMJ96_CH00368 ed39f69dc0f389463355d3789a6e7d81 258 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 30 257 1.1E-81 T 12-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AMJ96_CH00368 ed39f69dc0f389463355d3789a6e7d81 258 Pfam PF01209 ubiE/COQ5 methyltransferase family 27 257 2.1E-87 T 12-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AMJ96_CH00368 ed39f69dc0f389463355d3789a6e7d81 258 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 165 179 - T 12-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 AMJ96_CH00368 ed39f69dc0f389463355d3789a6e7d81 258 SUPERFAMILY SSF53335 25 254 1.38E-45 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH00368 ed39f69dc0f389463355d3789a6e7d81 258 Gene3D G3DSA:3.40.50.150 36 258 9.7E-79 T 12-10-2018 AMJ96_CH00368 ed39f69dc0f389463355d3789a6e7d81 258 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 41 56 - T 12-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 AMJ96_CH00958 3c70bafd526aefc5335cac174009636e 196 PIRSF PIRSF000709 2 195 3.0E-9 T 12-10-2018 AMJ96_CH00958 3c70bafd526aefc5335cac174009636e 196 Gene3D G3DSA:3.40.50.1240 2 194 7.2E-46 T 12-10-2018 IPR029033 Histidine phosphatase superfamily AMJ96_CH00958 3c70bafd526aefc5335cac174009636e 196 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 193 3.0E-40 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMJ96_CH00958 3c70bafd526aefc5335cac174009636e 196 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 5 14 - T 12-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 AMJ96_CH00958 3c70bafd526aefc5335cac174009636e 196 SUPERFAMILY SSF53254 3 192 1.3E-44 T 12-10-2018 IPR029033 Histidine phosphatase superfamily AMJ96_CH00958 3c70bafd526aefc5335cac174009636e 196 SMART SM00855 2 161 1.5E-23 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMJ96_CH00675 71fa57578c2f10e74dd28bdd796ffa86 543 Pfam PF11563 Protoglobin 12 174 8.7E-38 T 12-10-2018 AMJ96_CH00675 71fa57578c2f10e74dd28bdd796ffa86 543 Gene3D G3DSA:1.10.490.10 7 168 5.7E-26 T 12-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AMJ96_CH00675 71fa57578c2f10e74dd28bdd796ffa86 543 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 262 291 3.6E-29 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH00675 71fa57578c2f10e74dd28bdd796ffa86 543 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 416 445 3.6E-29 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH00675 71fa57578c2f10e74dd28bdd796ffa86 543 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 368 397 3.6E-29 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH00675 71fa57578c2f10e74dd28bdd796ffa86 543 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 339 366 3.6E-29 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH00675 71fa57578c2f10e74dd28bdd796ffa86 543 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 301 449 4.8E-41 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH00675 71fa57578c2f10e74dd28bdd796ffa86 543 Gene3D G3DSA:1.10.287.950 180 490 1.9E-57 T 12-10-2018 AMJ96_CH00675 71fa57578c2f10e74dd28bdd796ffa86 543 SMART SM00283 241 488 4.8E-67 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH00675 71fa57578c2f10e74dd28bdd796ffa86 543 SUPERFAMILY SSF46458 11 167 1.01E-20 T 12-10-2018 IPR009050 Globin-like superfamily AMJ96_CH00675 71fa57578c2f10e74dd28bdd796ffa86 543 SUPERFAMILY SSF58104 208 492 1.57E-53 T 12-10-2018 AMJ96_CH03208 dc18936eb58b4947949113a15c1a134a 417 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 187 238 5.1E-7 T 12-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AMJ96_CH03208 dc18936eb58b4947949113a15c1a134a 417 Gene3D G3DSA:3.30.460.10 5 148 3.9E-40 T 12-10-2018 AMJ96_CH03208 dc18936eb58b4947949113a15c1a134a 417 Pfam PF01743 Poly A polymerase head domain 30 151 5.6E-26 T 12-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AMJ96_CH03208 dc18936eb58b4947949113a15c1a134a 417 SUPERFAMILY SSF81891 150 415 1.57E-46 T 12-10-2018 AMJ96_CH03208 dc18936eb58b4947949113a15c1a134a 417 SUPERFAMILY SSF81301 11 148 1.09E-36 T 12-10-2018 AMJ96_CH03208 dc18936eb58b4947949113a15c1a134a 417 Gene3D G3DSA:1.10.3090.10 149 332 5.2E-33 T 12-10-2018 AMJ96_CH02310 976d3b6b1c317938a57fcc499d46ee3c 413 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 14 412 1.2E-178 T 12-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 AMJ96_CH02310 976d3b6b1c317938a57fcc499d46ee3c 413 PIRSF PIRSF005572 29 410 1.0E-48 T 12-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 AMJ96_CH02310 976d3b6b1c317938a57fcc499d46ee3c 413 SUPERFAMILY SSF53383 10 407 1.16E-128 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH02310 976d3b6b1c317938a57fcc499d46ee3c 413 Gene3D G3DSA:3.40.640.10 43 303 2.3E-168 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH02310 976d3b6b1c317938a57fcc499d46ee3c 413 Gene3D G3DSA:3.90.1150.10 15 405 2.3E-168 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH02310 976d3b6b1c317938a57fcc499d46ee3c 413 Pfam PF00266 Aminotransferase class-V 32 401 1.4E-143 T 12-10-2018 IPR000192 Aminotransferase class V domain AMJ96_CH01570 98df098557fbd413af72987eb46e5c17 548 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 278 397 6.4E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH01570 98df098557fbd413af72987eb46e5c17 548 SMART SM00388 167 235 5.7E-6 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH01570 98df098557fbd413af72987eb46e5c17 548 SUPERFAMILY SSF55874 226 398 3.01E-38 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH01570 98df098557fbd413af72987eb46e5c17 548 Gene3D G3DSA:1.20.120.620 16 114 2.8E-5 T 12-10-2018 IPR038318 KdpD, transmembrane domain superfamily AMJ96_CH01570 98df098557fbd413af72987eb46e5c17 548 SUPERFAMILY SSF52172 422 538 3.42E-30 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH01570 98df098557fbd413af72987eb46e5c17 548 SMART SM00448 421 533 2.0E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01570 98df098557fbd413af72987eb46e5c17 548 Gene3D G3DSA:1.10.287.130 159 233 8.3E-20 T 12-10-2018 AMJ96_CH01570 98df098557fbd413af72987eb46e5c17 548 Pfam PF13493 Domain of unknown function (DUF4118) 20 114 4.4E-14 T 12-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain AMJ96_CH01570 98df098557fbd413af72987eb46e5c17 548 Pfam PF00072 Response regulator receiver domain 423 533 7.4E-19 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01570 98df098557fbd413af72987eb46e5c17 548 Gene3D G3DSA:3.40.50.2300 420 540 6.7E-28 T 12-10-2018 AMJ96_CH01570 98df098557fbd413af72987eb46e5c17 548 Pfam PF00512 His Kinase A (phospho-acceptor) domain 169 232 1.5E-8 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH01570 98df098557fbd413af72987eb46e5c17 548 SMART SM00387 276 399 7.9E-25 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH01570 98df098557fbd413af72987eb46e5c17 548 PRINTS PR00344 Bacterial sensor protein C-terminal signature 346 356 1.2E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH01570 98df098557fbd413af72987eb46e5c17 548 PRINTS PR00344 Bacterial sensor protein C-terminal signature 383 396 1.2E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH01570 98df098557fbd413af72987eb46e5c17 548 PRINTS PR00344 Bacterial sensor protein C-terminal signature 359 377 1.2E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH01570 98df098557fbd413af72987eb46e5c17 548 PRINTS PR00344 Bacterial sensor protein C-terminal signature 328 342 1.2E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH01570 98df098557fbd413af72987eb46e5c17 548 SUPERFAMILY SSF47384 155 232 2.75E-11 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH01570 98df098557fbd413af72987eb46e5c17 548 Gene3D G3DSA:3.30.565.10 237 404 2.9E-41 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02497 ef741d1430c73d203e58ef9218bac911 289 SUPERFAMILY SSF48179 165 288 4.08E-41 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_CH02497 ef741d1430c73d203e58ef9218bac911 289 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 12-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMJ96_CH02497 ef741d1430c73d203e58ef9218bac911 289 Gene3D G3DSA:1.10.1040.10 165 289 1.6E-39 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMJ96_CH02497 ef741d1430c73d203e58ef9218bac911 289 SUPERFAMILY SSF51735 2 165 5.46E-52 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02497 ef741d1430c73d203e58ef9218bac911 289 Gene3D G3DSA:3.40.50.720 1 164 6.6E-52 T 12-10-2018 AMJ96_CH02497 ef741d1430c73d203e58ef9218bac911 289 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 167 285 7.3E-36 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMJ96_CH02497 ef741d1430c73d203e58ef9218bac911 289 PIRSF PIRSF000103 1 289 1.7E-73 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMJ96_CH02497 ef741d1430c73d203e58ef9218bac911 289 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 161 5.7E-49 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMJ96_CH04073 490f0e2605964af29f7d5a028d1ef841 317 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 4 316 47.593 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMJ96_CH04073 490f0e2605964af29f7d5a028d1ef841 317 Gene3D G3DSA:3.90.226.10 1 316 5.7E-110 T 12-10-2018 AMJ96_CH04073 490f0e2605964af29f7d5a028d1ef841 317 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 88 99 3.6E-38 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMJ96_CH04073 490f0e2605964af29f7d5a028d1ef841 317 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 197 206 3.6E-38 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMJ96_CH04073 490f0e2605964af29f7d5a028d1ef841 317 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 153 166 3.6E-38 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMJ96_CH04073 490f0e2605964af29f7d5a028d1ef841 317 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 113 131 3.6E-38 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMJ96_CH04073 490f0e2605964af29f7d5a028d1ef841 317 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 134 150 3.6E-38 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMJ96_CH04073 490f0e2605964af29f7d5a028d1ef841 317 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 169 182 3.6E-38 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMJ96_CH04073 490f0e2605964af29f7d5a028d1ef841 317 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 315 1.1E-123 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMJ96_CH04073 490f0e2605964af29f7d5a028d1ef841 317 SUPERFAMILY SSF52096 4 315 6.7E-95 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_CH04073 490f0e2605964af29f7d5a028d1ef841 317 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 4 148 4.9E-56 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMJ96_CH00025 ccbe8939b09c21f13fbcb7ac798c2da5 106 Pfam PF00085 Thioredoxin 5 103 2.0E-33 T 12-10-2018 IPR013766 Thioredoxin domain GO:0045454 AMJ96_CH00025 ccbe8939b09c21f13fbcb7ac798c2da5 106 ProSitePatterns PS00194 Thioredoxin family active site. 23 41 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AMJ96_CH00025 ccbe8939b09c21f13fbcb7ac798c2da5 106 PIRSF PIRSF000077 1 106 1.4E-42 T 12-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMJ96_CH00025 ccbe8939b09c21f13fbcb7ac798c2da5 106 TIGRFAM TIGR01068 thioredoxin: thioredoxin 8 104 9.0E-40 T 12-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AMJ96_CH00025 ccbe8939b09c21f13fbcb7ac798c2da5 106 PRINTS PR00421 Thioredoxin family signature 30 39 8.9E-10 T 12-10-2018 AMJ96_CH00025 ccbe8939b09c21f13fbcb7ac798c2da5 106 PRINTS PR00421 Thioredoxin family signature 22 30 8.9E-10 T 12-10-2018 AMJ96_CH00025 ccbe8939b09c21f13fbcb7ac798c2da5 106 PRINTS PR00421 Thioredoxin family signature 70 81 8.9E-10 T 12-10-2018 AMJ96_CH00025 ccbe8939b09c21f13fbcb7ac798c2da5 106 SUPERFAMILY SSF52833 4 105 4.21E-38 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH00025 ccbe8939b09c21f13fbcb7ac798c2da5 106 Gene3D G3DSA:3.40.30.10 3 106 3.1E-35 T 12-10-2018 AMJ96_PA00070 07058a6535bb36f487768a767bb5cb69 239 SUPERFAMILY SSF89562 13 193 5.23E-41 T 12-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily AMJ96_PA00070 07058a6535bb36f487768a767bb5cb69 239 Gene3D G3DSA:3.50.30.100 2 204 2.8E-49 T 12-10-2018 AMJ96_PA00070 07058a6535bb36f487768a767bb5cb69 239 Pfam PF03737 Aldolase/RraA 18 182 1.7E-29 T 12-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AMJ96_CH03608 31dd0c58589c328d4f2794a2229cd952 303 SUPERFAMILY SSF53448 3 262 3.37E-27 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03608 31dd0c58589c328d4f2794a2229cd952 303 Gene3D G3DSA:3.90.550.10 6 256 2.7E-29 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03608 31dd0c58589c328d4f2794a2229cd952 303 Pfam PF01501 Glycosyl transferase family 8 5 233 2.8E-17 T 12-10-2018 IPR002495 Glycosyl transferase, family 8 GO:0016757 AMJ96_CH02493 fb605e4342bae79c79bcc7b5f6c8149d 136 Gene3D G3DSA:3.30.530.20 2 135 6.6E-38 T 12-10-2018 IPR023393 START-like domain superfamily AMJ96_CH02493 fb605e4342bae79c79bcc7b5f6c8149d 136 SUPERFAMILY SSF55961 6 133 9.43E-40 T 12-10-2018 AMJ96_CH02493 fb605e4342bae79c79bcc7b5f6c8149d 136 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 19 132 2.3E-24 T 12-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like AMJ96_CH00215 1d851bfa2dd33f798c57a3c1ee4921a3 335 Pfam PF00482 Type II secretion system (T2SS), protein F 168 292 1.3E-20 T 12-10-2018 IPR018076 Type II secretion system F domain AMJ96_CH00215 1d851bfa2dd33f798c57a3c1ee4921a3 335 Gene3D G3DSA:1.20.81.30 162 270 2.2E-11 T 12-10-2018 AMJ96_CH03732 b8f996d89903f61ecd4840734890728f 327 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 211 5.8E-22 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_CH03732 b8f996d89903f61ecd4840734890728f 327 SUPERFAMILY SSF51735 1 289 3.13E-47 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03732 b8f996d89903f61ecd4840734890728f 327 Gene3D G3DSA:3.40.50.720 1 296 7.7E-44 T 12-10-2018 AMJ96_PA00132 d02c3bc9e5d260d5711bc5bb50717b62 540 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 70 527 1.1E-238 T 12-10-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 AMJ96_PA00132 d02c3bc9e5d260d5711bc5bb50717b62 540 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 72 501 2.9E-117 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PA00132 d02c3bc9e5d260d5711bc5bb50717b62 540 SUPERFAMILY SSF81442 70 521 9.42E-122 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PA00132 d02c3bc9e5d260d5711bc5bb50717b62 540 Gene3D G3DSA:1.20.210.10 61 530 7.2E-192 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PA00132 d02c3bc9e5d260d5711bc5bb50717b62 540 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 262 317 - T 12-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00213 3d6d04a89ef3d3a74c38e6e6ce452fb0 401 Gene3D G3DSA:1.20.1250.20 1 393 2.8E-51 T 12-10-2018 AMJ96_PC00213 3d6d04a89ef3d3a74c38e6e6ce452fb0 401 SUPERFAMILY SSF103473 4 391 3.92E-60 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_PC00213 3d6d04a89ef3d3a74c38e6e6ce452fb0 401 Pfam PF07690 Major Facilitator Superfamily 17 264 3.7E-28 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH03473 7cadb6ad5ca3fad825211ae7656f2ae1 337 Pfam PF07536 HWE histidine kinase 140 220 6.4E-25 T 12-10-2018 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 AMJ96_CH03473 7cadb6ad5ca3fad825211ae7656f2ae1 337 SMART SM00911 140 222 1.7E-30 T 12-10-2018 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 AMJ96_PC00441 a4dec0f01cd2a20aa8d063c5f860a6f0 278 SUPERFAMILY SSF51556 3 278 3.16E-68 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_PC00441 a4dec0f01cd2a20aa8d063c5f860a6f0 278 Gene3D G3DSA:3.20.20.140 1 278 1.7E-73 T 12-10-2018 AMJ96_PC00441 a4dec0f01cd2a20aa8d063c5f860a6f0 278 Pfam PF04909 Amidohydrolase 3 277 2.8E-42 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMJ96_CH03118 9bb96e0e813694c439ac57f1e14bd39d 622 Gene3D G3DSA:3.40.50.300 220 351 4.9E-38 T 12-10-2018 AMJ96_CH03118 9bb96e0e813694c439ac57f1e14bd39d 622 Pfam PF09382 RQC domain 418 529 5.5E-34 T 12-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 AMJ96_CH03118 9bb96e0e813694c439ac57f1e14bd39d 622 Gene3D G3DSA:3.40.50.300 18 219 2.0E-79 T 12-10-2018 AMJ96_CH03118 9bb96e0e813694c439ac57f1e14bd39d 622 SUPERFAMILY SSF52540 24 209 1.08E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03118 9bb96e0e813694c439ac57f1e14bd39d 622 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 26 475 6.6E-152 T 12-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 AMJ96_CH03118 9bb96e0e813694c439ac57f1e14bd39d 622 Pfam PF00270 DEAD/DEAH box helicase 41 196 7.4E-20 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMJ96_CH03118 9bb96e0e813694c439ac57f1e14bd39d 622 Gene3D G3DSA:1.10.150.80 540 622 1.0E-23 T 12-10-2018 AMJ96_CH03118 9bb96e0e813694c439ac57f1e14bd39d 622 Pfam PF00271 Helicase conserved C-terminal domain 237 341 2.4E-15 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH03118 9bb96e0e813694c439ac57f1e14bd39d 622 Gene3D G3DSA:1.10.10.10 352 538 2.6E-44 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03118 9bb96e0e813694c439ac57f1e14bd39d 622 SUPERFAMILY SSF47819 545 618 6.54E-22 T 12-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 AMJ96_CH03118 9bb96e0e813694c439ac57f1e14bd39d 622 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 26 617 2.0E-234 T 12-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 AMJ96_CH03118 9bb96e0e813694c439ac57f1e14bd39d 622 SMART SM00487 33 229 1.4E-31 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMJ96_CH03118 9bb96e0e813694c439ac57f1e14bd39d 622 Pfam PF16124 RecQ zinc-binding 354 416 1.1E-17 T 12-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain AMJ96_CH03118 9bb96e0e813694c439ac57f1e14bd39d 622 Pfam PF00570 HRDC domain 552 616 8.2E-23 T 12-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 AMJ96_CH03118 9bb96e0e813694c439ac57f1e14bd39d 622 SMART SM00490 261 342 1.6E-25 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH03118 9bb96e0e813694c439ac57f1e14bd39d 622 SMART SM00341 546 621 4.5E-11 T 12-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 AMJ96_CH03118 9bb96e0e813694c439ac57f1e14bd39d 622 SMART SM00956 423 526 1.1E-42 T 12-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 AMJ96_CH03118 9bb96e0e813694c439ac57f1e14bd39d 622 SUPERFAMILY SSF52540 219 461 2.66E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01758 68e7051844d78b70f299d05a425fe5ff 347 Gene3D G3DSA:3.40.50.1820 41 346 8.5E-81 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01758 68e7051844d78b70f299d05a425fe5ff 347 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 116 132 - T 12-10-2018 IPR002168 Lipase, GDXG, putative histidine active site GO:0016787 Reactome: R-HSA-163560 AMJ96_CH01758 68e7051844d78b70f299d05a425fe5ff 347 Pfam PF07859 alpha/beta hydrolase fold 116 317 1.1E-52 T 12-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 AMJ96_CH01758 68e7051844d78b70f299d05a425fe5ff 347 SUPERFAMILY SSF53474 69 340 2.53E-56 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PA00253 a89d880061a39ac908b3ad0fcdfa60da 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 1.6E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00253 a89d880061a39ac908b3ad0fcdfa60da 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 1.6E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00253 a89d880061a39ac908b3ad0fcdfa60da 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 164 1.6E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00253 a89d880061a39ac908b3ad0fcdfa60da 257 Pfam PF00106 short chain dehydrogenase 7 185 2.3E-46 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00253 a89d880061a39ac908b3ad0fcdfa60da 257 Gene3D G3DSA:3.40.50.720 4 243 6.6E-58 T 12-10-2018 AMJ96_PA00253 a89d880061a39ac908b3ad0fcdfa60da 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 1.1E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00253 a89d880061a39ac908b3ad0fcdfa60da 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 183 1.1E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00253 a89d880061a39ac908b3ad0fcdfa60da 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 1.1E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00253 a89d880061a39ac908b3ad0fcdfa60da 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 1.1E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00253 a89d880061a39ac908b3ad0fcdfa60da 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.1E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00253 a89d880061a39ac908b3ad0fcdfa60da 257 SUPERFAMILY SSF51735 6 230 6.28E-59 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00484 984c73fb0da558978718cff83509264a 190 PIRSF PIRSF033318 2 189 2.8E-96 T 12-10-2018 IPR014185 Glutathione-dependent formaldehyde-activating enzyme GO:0008270|GO:0046294|GO:0051907 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMJ96_PD00484 984c73fb0da558978718cff83509264a 190 Gene3D G3DSA:3.90.1590.10 1 190 2.5E-89 T 12-10-2018 AMJ96_PD00484 984c73fb0da558978718cff83509264a 190 TIGRFAM TIGR02820 formald_GSH: S-(hydroxymethyl)glutathione synthase 6 184 1.7E-93 T 12-10-2018 IPR014185 Glutathione-dependent formaldehyde-activating enzyme GO:0008270|GO:0046294|GO:0051907 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMJ96_PD00484 984c73fb0da558978718cff83509264a 190 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 48 139 7.6E-9 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMJ96_PD00484 984c73fb0da558978718cff83509264a 190 SUPERFAMILY SSF51316 3 188 2.09E-50 T 12-10-2018 IPR011057 Mss4-like superfamily AMJ96_PD00484 984c73fb0da558978718cff83509264a 190 Hamap MF_00723 Glutathione-dependent formaldehyde-activating enzyme [gfa]. 1 190 118.335 T 12-10-2018 IPR014185 Glutathione-dependent formaldehyde-activating enzyme GO:0008270|GO:0046294|GO:0051907 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMJ96_PA00065 b1ce7e77dac3b864212720fff9b0ac86 620 Gene3D G3DSA:2.60.40.1500 15 523 1.2E-145 T 12-10-2018 AMJ96_PA00065 b1ce7e77dac3b864212720fff9b0ac86 620 Pfam PF01229 Glycosyl hydrolases family 39 8 523 2.7E-52 T 12-10-2018 IPR000514 Glycoside hydrolase, family 39 GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2024101|Reactome: R-HSA-2206302 AMJ96_PA00065 b1ce7e77dac3b864212720fff9b0ac86 620 Gene3D G3DSA:3.20.20.80 19 376 1.2E-145 T 12-10-2018 AMJ96_PA00065 b1ce7e77dac3b864212720fff9b0ac86 620 PRINTS PR00745 Glycosyl hydrolase family 39 signature 78 94 1.2E-16 T 12-10-2018 IPR000514 Glycoside hydrolase, family 39 GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2024101|Reactome: R-HSA-2206302 AMJ96_PA00065 b1ce7e77dac3b864212720fff9b0ac86 620 PRINTS PR00745 Glycosyl hydrolase family 39 signature 136 152 1.2E-16 T 12-10-2018 IPR000514 Glycoside hydrolase, family 39 GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2024101|Reactome: R-HSA-2206302 AMJ96_PA00065 b1ce7e77dac3b864212720fff9b0ac86 620 PRINTS PR00745 Glycosyl hydrolase family 39 signature 119 136 1.2E-16 T 12-10-2018 IPR000514 Glycoside hydrolase, family 39 GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2024101|Reactome: R-HSA-2206302 AMJ96_PA00065 b1ce7e77dac3b864212720fff9b0ac86 620 PRINTS PR00745 Glycosyl hydrolase family 39 signature 206 220 1.2E-16 T 12-10-2018 IPR000514 Glycoside hydrolase, family 39 GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2024101|Reactome: R-HSA-2206302 AMJ96_PA00065 b1ce7e77dac3b864212720fff9b0ac86 620 PRINTS PR00745 Glycosyl hydrolase family 39 signature 445 456 1.2E-16 T 12-10-2018 IPR000514 Glycoside hydrolase, family 39 GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2024101|Reactome: R-HSA-2206302 AMJ96_PA00065 b1ce7e77dac3b864212720fff9b0ac86 620 PRINTS PR00745 Glycosyl hydrolase family 39 signature 277 294 1.2E-16 T 12-10-2018 IPR000514 Glycoside hydrolase, family 39 GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2024101|Reactome: R-HSA-2206302 AMJ96_PA00065 b1ce7e77dac3b864212720fff9b0ac86 620 SUPERFAMILY SSF51445 17 321 4.74E-47 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_PA00065 b1ce7e77dac3b864212720fff9b0ac86 620 SUPERFAMILY SSF51011 369 533 5.04E-11 T 12-10-2018 AMJ96_CH01535 60a027bc7a938420b41293bde3a8238b 734 Gene3D G3DSA:3.30.870.10 341 520 1.4E-72 T 12-10-2018 AMJ96_CH01535 60a027bc7a938420b41293bde3a8238b 734 PIRSF PIRSF015589 6 721 6.1E-266 T 12-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AMJ96_CH01535 60a027bc7a938420b41293bde3a8238b 734 SUPERFAMILY SSF143724 134 333 2.55E-58 T 12-10-2018 AMJ96_CH01535 60a027bc7a938420b41293bde3a8238b 734 SUPERFAMILY SSF56024 521 705 4.93E-70 T 12-10-2018 AMJ96_CH01535 60a027bc7a938420b41293bde3a8238b 734 Pfam PF13089 Polyphosphate kinase N-terminal domain 32 136 4.6E-34 T 12-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 AMJ96_CH01535 60a027bc7a938420b41293bde3a8238b 734 Hamap MF_00347 Polyphosphate kinase [ppk]. 29 709 27.582 T 12-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AMJ96_CH01535 60a027bc7a938420b41293bde3a8238b 734 SUPERFAMILY SSF140356 29 129 6.93E-34 T 12-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 AMJ96_CH01535 60a027bc7a938420b41293bde3a8238b 734 Gene3D G3DSA:3.30.1840.10 25 332 1.9E-93 T 12-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 AMJ96_CH01535 60a027bc7a938420b41293bde3a8238b 734 Gene3D G3DSA:3.30.870.10 521 709 2.4E-65 T 12-10-2018 AMJ96_CH01535 60a027bc7a938420b41293bde3a8238b 734 Pfam PF13090 Polyphosphate kinase C-terminal domain 351 704 2.1E-152 T 12-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 AMJ96_CH01535 60a027bc7a938420b41293bde3a8238b 734 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 31 706 3.0E-285 T 12-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AMJ96_CH01535 60a027bc7a938420b41293bde3a8238b 734 SUPERFAMILY SSF56024 339 516 3.45E-57 T 12-10-2018 AMJ96_CH01535 60a027bc7a938420b41293bde3a8238b 734 Pfam PF02503 Polyphosphate kinase middle domain 146 341 1.5E-54 T 12-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 AMJ96_PA00105 6e65596f3e6441736acdbedc00434552 430 SUPERFAMILY SSF82689 321 422 7.72E-25 T 12-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AMJ96_PA00105 6e65596f3e6441736acdbedc00434552 430 SUPERFAMILY SSF82861 169 251 2.22E-12 T 12-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AMJ96_PA00105 6e65596f3e6441736acdbedc00434552 430 Gene3D G3DSA:2.30.30.60 269 317 3.3E-6 T 12-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily AMJ96_PA00105 6e65596f3e6441736acdbedc00434552 430 Gene3D G3DSA:3.30.70.100 320 415 4.6E-20 T 12-10-2018 AMJ96_PA00105 6e65596f3e6441736acdbedc00434552 430 Pfam PF00924 Mechanosensitive ion channel 210 411 1.1E-46 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMJ96_PA00105 6e65596f3e6441736acdbedc00434552 430 SUPERFAMILY SSF50182 253 318 4.9E-14 T 12-10-2018 IPR010920 LSM domain superfamily AMJ96_PC00464 496ab903b648a4767c14ffb86593a1a6 459 SUPERFAMILY SSF56014 333 449 5.37E-10 T 12-10-2018 AMJ96_PC00464 496ab903b648a4767c14ffb86593a1a6 459 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 37 102 1.7E-9 T 12-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMJ96_PC00464 496ab903b648a4767c14ffb86593a1a6 459 SUPERFAMILY SSF55124 26 105 2.29E-17 T 12-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMJ96_PC00464 496ab903b648a4767c14ffb86593a1a6 459 TIGRFAM TIGR02435 CobG: precorrin-3B synthase 28 398 4.8E-89 T 12-10-2018 IPR012798 Cobalamin (vitamin B12) biosynthesis CobG-like AMJ96_PC00464 496ab903b648a4767c14ffb86593a1a6 459 Gene3D G3DSA:3.30.413.10 111 176 2.3E-15 T 12-10-2018 AMJ96_PC00464 496ab903b648a4767c14ffb86593a1a6 459 Gene3D G3DSA:3.30.413.10 333 451 8.1E-12 T 12-10-2018 AMJ96_PC00464 496ab903b648a4767c14ffb86593a1a6 459 SUPERFAMILY SSF55124 236 326 5.05E-10 T 12-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMJ96_PC00464 496ab903b648a4767c14ffb86593a1a6 459 Gene3D G3DSA:3.90.480.10 248 310 2.4E-5 T 12-10-2018 AMJ96_PC00464 496ab903b648a4767c14ffb86593a1a6 459 Gene3D G3DSA:3.90.480.10 45 110 2.3E-15 T 12-10-2018 AMJ96_CH01344 905530e497c7fd91181ce387765a05ff 430 SUPERFAMILY SSF53067 4 180 2.12E-19 T 12-10-2018 AMJ96_CH01344 905530e497c7fd91181ce387765a05ff 430 SUPERFAMILY SSF53067 182 420 3.42E-31 T 12-10-2018 AMJ96_CH01344 905530e497c7fd91181ce387765a05ff 430 Pfam PF00012 Hsp70 protein 308 403 1.7E-7 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMJ96_CH01344 905530e497c7fd91181ce387765a05ff 430 Pfam PF00012 Hsp70 protein 152 236 8.5E-6 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMJ96_CH01344 905530e497c7fd91181ce387765a05ff 430 PRINTS PR00301 70kDa heat shock protein signature 3 16 3.9E-5 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMJ96_CH01344 905530e497c7fd91181ce387765a05ff 430 PRINTS PR00301 70kDa heat shock protein signature 374 390 3.9E-5 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMJ96_CH01344 905530e497c7fd91181ce387765a05ff 430 PRINTS PR00301 70kDa heat shock protein signature 64 72 3.9E-5 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AMJ96_CH01344 905530e497c7fd91181ce387765a05ff 430 Gene3D G3DSA:3.30.420.40 406 416 7.9E-14 T 12-10-2018 AMJ96_CH01344 905530e497c7fd91181ce387765a05ff 430 Gene3D G3DSA:3.90.640.10 307 355 7.9E-14 T 12-10-2018 AMJ96_CH01344 905530e497c7fd91181ce387765a05ff 430 Gene3D G3DSA:3.90.640.10 220 238 9.2E-28 T 12-10-2018 AMJ96_CH01344 905530e497c7fd91181ce387765a05ff 430 Gene3D G3DSA:3.30.420.40 356 405 7.9E-14 T 12-10-2018 AMJ96_CH01344 905530e497c7fd91181ce387765a05ff 430 Gene3D G3DSA:3.30.420.40 180 219 9.2E-28 T 12-10-2018 AMJ96_CH01344 905530e497c7fd91181ce387765a05ff 430 Gene3D G3DSA:3.30.420.40 5 179 9.2E-28 T 12-10-2018 AMJ96_CH01344 905530e497c7fd91181ce387765a05ff 430 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 377 391 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AMJ96_CH01000 7d493563c683e531c3538c9f31b18965 474 TIGRFAM TIGR00260 thrC: threonine synthase 72 427 6.2E-87 T 12-10-2018 IPR004450 Threonine synthase-like AMJ96_CH01000 7d493563c683e531c3538c9f31b18965 474 SUPERFAMILY SSF53686 4 462 3.46E-167 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMJ96_CH01000 7d493563c683e531c3538c9f31b18965 474 Gene3D G3DSA:3.40.50.1100 100 432 1.7E-155 T 12-10-2018 AMJ96_CH01000 7d493563c683e531c3538c9f31b18965 474 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 102 408 1.4E-18 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMJ96_CH01000 7d493563c683e531c3538c9f31b18965 474 Gene3D G3DSA:3.90.1380.10 1 89 1.1E-31 T 12-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily AMJ96_CH01000 7d493563c683e531c3538c9f31b18965 474 Gene3D G3DSA:3.40.50.1100 111 445 1.7E-155 T 12-10-2018 AMJ96_CH01000 7d493563c683e531c3538c9f31b18965 474 Pfam PF14821 Threonine synthase N terminus 6 83 9.1E-29 T 12-10-2018 IPR029144 Threonine synthase, N-terminal AMJ96_PD00449 6549ee0257d81b67a2fd7b54c8b5960a 332 SMART SM00354 8 78 4.9E-26 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00449 6549ee0257d81b67a2fd7b54c8b5960a 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 10 55 3.6E-17 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00449 6549ee0257d81b67a2fd7b54c8b5960a 332 Pfam PF13377 Periplasmic binding protein-like domain 176 327 2.5E-20 T 12-10-2018 AMJ96_PD00449 6549ee0257d81b67a2fd7b54c8b5960a 332 ProSitePatterns PS00356 LacI-type HTH domain signature. 11 29 - T 12-10-2018 AMJ96_PD00449 6549ee0257d81b67a2fd7b54c8b5960a 332 SUPERFAMILY SSF47413 8 66 3.52E-16 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PD00449 6549ee0257d81b67a2fd7b54c8b5960a 332 Gene3D G3DSA:3.40.50.2300 71 313 1.1E-57 T 12-10-2018 AMJ96_PD00449 6549ee0257d81b67a2fd7b54c8b5960a 332 Gene3D G3DSA:1.10.260.40 1 64 4.6E-22 T 12-10-2018 AMJ96_PD00449 6549ee0257d81b67a2fd7b54c8b5960a 332 SUPERFAMILY SSF53822 66 314 1.04E-46 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PD00449 6549ee0257d81b67a2fd7b54c8b5960a 332 Gene3D G3DSA:3.40.50.2300 167 297 1.1E-57 T 12-10-2018 AMJ96_PC00033 48f5908a64619543645c1b6dca9b0b8a 443 SUPERFAMILY SSF103473 31 435 3.01E-39 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_PC00033 48f5908a64619543645c1b6dca9b0b8a 443 Gene3D G3DSA:1.20.1250.20 31 443 3.7E-38 T 12-10-2018 AMJ96_PC00033 48f5908a64619543645c1b6dca9b0b8a 443 ProSitePatterns PS00216 Sugar transport proteins signature 1. 314 331 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMJ96_PC00033 48f5908a64619543645c1b6dca9b0b8a 443 Pfam PF00083 Sugar (and other) transporter 36 252 2.4E-14 T 12-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMJ96_CH00832 22a7aad097609062caf185f709fb9fe4 436 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 76 87 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMJ96_CH00832 22a7aad097609062caf185f709fb9fe4 436 Gene3D G3DSA:1.10.1060.10 5 110 1.1E-8 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMJ96_CH00832 22a7aad097609062caf185f709fb9fe4 436 Pfam PF12838 4Fe-4S dicluster domain 24 90 7.4E-12 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMJ96_CH00832 22a7aad097609062caf185f709fb9fe4 436 SUPERFAMILY SSF54862 21 115 4.18E-21 T 12-10-2018 AMJ96_CH00832 22a7aad097609062caf185f709fb9fe4 436 PIRSF PIRSF000139 5 429 5.3E-139 T 12-10-2018 AMJ96_CH00832 22a7aad097609062caf185f709fb9fe4 436 Pfam PF02754 Cysteine-rich domain 320 403 1.7E-14 T 12-10-2018 IPR004017 Cysteine-rich domain AMJ96_CH00832 22a7aad097609062caf185f709fb9fe4 436 Pfam PF02754 Cysteine-rich domain 188 275 2.4E-11 T 12-10-2018 IPR004017 Cysteine-rich domain AMJ96_PD00306 18f608e7f70f6853468a62a0124f8fec 517 SUPERFAMILY SSF52540 279 492 9.52E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00306 18f608e7f70f6853468a62a0124f8fec 517 SMART SM00382 37 226 9.8E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00306 18f608e7f70f6853468a62a0124f8fec 517 Pfam PF00005 ABC transporter 28 177 8.7E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00306 18f608e7f70f6853468a62a0124f8fec 517 SUPERFAMILY SSF52540 11 234 1.65E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00306 18f608e7f70f6853468a62a0124f8fec 517 Pfam PF00005 ABC transporter 281 437 1.5E-16 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00306 18f608e7f70f6853468a62a0124f8fec 517 Gene3D G3DSA:3.40.50.300 269 511 8.4E-42 T 12-10-2018 AMJ96_PD00306 18f608e7f70f6853468a62a0124f8fec 517 Gene3D G3DSA:3.40.50.300 4 247 7.9E-54 T 12-10-2018 AMJ96_PD00306 18f608e7f70f6853468a62a0124f8fec 517 ProSitePatterns PS00211 ABC transporters family signature. 410 424 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00672 c45f297857688cc728420427692dc708 605 SUPERFAMILY SSF51735 446 574 1.97E-27 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00672 c45f297857688cc728420427692dc708 605 Gene3D G3DSA:1.20.1530.20 7 404 2.6E-80 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily AMJ96_CH00672 c45f297857688cc728420427692dc708 605 Pfam PF00999 Sodium/hydrogen exchanger family 13 397 1.0E-79 T 12-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMJ96_CH00672 c45f297857688cc728420427692dc708 605 Gene3D G3DSA:3.40.50.720 443 584 7.3E-28 T 12-10-2018 AMJ96_CH00672 c45f297857688cc728420427692dc708 605 Pfam PF02254 TrkA-N domain 449 562 1.5E-23 T 12-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AMJ96_PD00293 38b7a516f94aded856379159ee48c5a9 345 SUPERFAMILY SSF51735 2 152 1.17E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00293 38b7a516f94aded856379159ee48c5a9 345 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 119 9.6E-22 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_PD00293 38b7a516f94aded856379159ee48c5a9 345 Gene3D G3DSA:3.40.50.720 1 131 8.5E-37 T 12-10-2018 AMJ96_PD00293 38b7a516f94aded856379159ee48c5a9 345 SUPERFAMILY SSF55347 128 320 5.4E-31 T 12-10-2018 AMJ96_PD00293 38b7a516f94aded856379159ee48c5a9 345 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 132 206 4.1E-6 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AMJ96_PD00293 38b7a516f94aded856379159ee48c5a9 345 Gene3D G3DSA:3.30.360.10 132 341 2.1E-35 T 12-10-2018 AMJ96_CH02235 fbf088ac581c97a432e2e88b4f359f1d 407 Pfam PF03453 MoeA N-terminal region (domain I and II) 5 162 7.2E-38 T 12-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMJ96_CH02235 fbf088ac581c97a432e2e88b4f359f1d 407 Gene3D G3DSA:3.90.105.10 23 172 1.7E-119 T 12-10-2018 AMJ96_CH02235 fbf088ac581c97a432e2e88b4f359f1d 407 SUPERFAMILY SSF53218 176 321 1.23E-39 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMJ96_CH02235 fbf088ac581c97a432e2e88b4f359f1d 407 SUPERFAMILY SSF63882 3 173 1.57E-48 T 12-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMJ96_CH02235 fbf088ac581c97a432e2e88b4f359f1d 407 Gene3D G3DSA:3.40.980.10 173 327 1.7E-119 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMJ96_CH02235 fbf088ac581c97a432e2e88b4f359f1d 407 SMART SM00852 178 317 4.6E-41 T 12-10-2018 IPR001453 MoaB/Mog domain AMJ96_CH02235 fbf088ac581c97a432e2e88b4f359f1d 407 Gene3D G3DSA:2.170.190.11 47 139 1.7E-119 T 12-10-2018 AMJ96_CH02235 fbf088ac581c97a432e2e88b4f359f1d 407 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 177 311 3.9E-26 T 12-10-2018 IPR001453 MoaB/Mog domain AMJ96_CH02235 fbf088ac581c97a432e2e88b4f359f1d 407 Pfam PF03454 MoeA C-terminal region (domain IV) 331 401 4.0E-15 T 12-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMJ96_CH02235 fbf088ac581c97a432e2e88b4f359f1d 407 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 252 286 - T 12-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 AMJ96_CH02235 fbf088ac581c97a432e2e88b4f359f1d 407 Pfam PF00994 Probable molybdopterin binding domain 178 316 2.2E-25 T 12-10-2018 IPR001453 MoaB/Mog domain AMJ96_CH02235 fbf088ac581c97a432e2e88b4f359f1d 407 Gene3D G3DSA:2.40.340.10 328 394 1.7E-119 T 12-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMJ96_CH02235 fbf088ac581c97a432e2e88b4f359f1d 407 SUPERFAMILY SSF63867 330 404 1.31E-16 T 12-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMJ96_CH00378 085bdb61d0bbc77a8c7fde4d1c56f797 362 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 16 357 2.4E-95 T 12-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 AMJ96_CH00378 085bdb61d0bbc77a8c7fde4d1c56f797 362 SUPERFAMILY SSF46785 15 95 2.31E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00378 085bdb61d0bbc77a8c7fde4d1c56f797 362 SUPERFAMILY SSF55781 85 357 7.85E-53 T 12-10-2018 AMJ96_CH00378 085bdb61d0bbc77a8c7fde4d1c56f797 362 Gene3D G3DSA:3.30.450.40 120 356 1.9E-30 T 12-10-2018 IPR029016 GAF-like domain superfamily AMJ96_CH00378 085bdb61d0bbc77a8c7fde4d1c56f797 362 Gene3D G3DSA:3.30.390.60 143 247 1.9E-30 T 12-10-2018 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily AMJ96_CH00378 085bdb61d0bbc77a8c7fde4d1c56f797 362 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 14 351 28.374 T 12-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 AMJ96_CH00378 085bdb61d0bbc77a8c7fde4d1c56f797 362 Gene3D G3DSA:1.10.10.10 3 97 8.1E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00378 085bdb61d0bbc77a8c7fde4d1c56f797 362 Pfam PF01628 HrcA protein C terminal domain 119 344 1.1E-51 T 12-10-2018 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 AMJ96_CH00378 085bdb61d0bbc77a8c7fde4d1c56f797 362 PIRSF PIRSF005485 12 361 7.3E-99 T 12-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 AMJ96_CH04249 00ddde552a112fe1ab6ac919bac4bc3e 587 ProSitePatterns PS00211 ABC transporters family signature. 472 486 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH04249 00ddde552a112fe1ab6ac919bac4bc3e 587 SMART SM00382 360 552 1.0E-19 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04249 00ddde552a112fe1ab6ac919bac4bc3e 587 SUPERFAMILY SSF90123 10 484 2.49E-44 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH04249 00ddde552a112fe1ab6ac919bac4bc3e 587 SUPERFAMILY SSF52540 328 568 2.61E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04249 00ddde552a112fe1ab6ac919bac4bc3e 587 Gene3D G3DSA:3.40.50.300 325 584 1.4E-88 T 12-10-2018 AMJ96_CH04249 00ddde552a112fe1ab6ac919bac4bc3e 587 TIGRFAM TIGR01192 chvA: glucan exporter ATP-binding protein 1 583 0.0 T 12-10-2018 IPR005896 Glucan exporter ATP-binding protein, NdvA GO:0005886|GO:0015441|GO:0015775 AMJ96_CH04249 00ddde552a112fe1ab6ac919bac4bc3e 587 Pfam PF00005 ABC transporter 351 500 1.1E-37 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH04249 00ddde552a112fe1ab6ac919bac4bc3e 587 Pfam PF00664 ABC transporter transmembrane region 23 287 2.9E-35 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_CH04249 00ddde552a112fe1ab6ac919bac4bc3e 587 Gene3D G3DSA:1.20.1560.10 3 322 2.1E-36 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH03812 aecc3ae224ecc6babc82e0c29f924ef9 350 Pfam PF01212 Beta-eliminating lyase 3 274 9.6E-49 T 12-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 AMJ96_CH03812 aecc3ae224ecc6babc82e0c29f924ef9 350 SUPERFAMILY SSF53383 3 348 2.54E-84 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH03812 aecc3ae224ecc6babc82e0c29f924ef9 350 PIRSF PIRSF038940 1 350 4.6E-144 T 12-10-2018 IPR026273 Low specificity L-threonine aldolase GO:0004793|GO:0006567 KEGG: 00260+4.1.2.48 AMJ96_CH03812 aecc3ae224ecc6babc82e0c29f924ef9 350 Gene3D G3DSA:3.90.1150.10 5 343 9.2E-116 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH03812 aecc3ae224ecc6babc82e0c29f924ef9 350 Gene3D G3DSA:3.40.640.10 12 252 9.2E-116 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH02613 c34df4d1c173978163194972c6f66a03 619 SMART SM00382 230 371 5.0E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02613 c34df4d1c173978163194972c6f66a03 619 Pfam PF01434 Peptidase family M41 447 610 2.0E-14 T 12-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AMJ96_CH02613 c34df4d1c173978163194972c6f66a03 619 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 234 368 2.7E-22 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMJ96_CH02613 c34df4d1c173978163194972c6f66a03 619 Gene3D G3DSA:3.40.50.300 231 369 5.1E-37 T 12-10-2018 AMJ96_CH02613 c34df4d1c173978163194972c6f66a03 619 SUPERFAMILY SSF52540 192 423 6.38E-34 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02613 c34df4d1c173978163194972c6f66a03 619 Gene3D G3DSA:1.10.8.60 370 418 5.1E-37 T 12-10-2018 AMJ96_CH02613 c34df4d1c173978163194972c6f66a03 619 ProSitePatterns PS00674 AAA-protein family signature. 339 357 - T 12-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 AMJ96_CH02613 c34df4d1c173978163194972c6f66a03 619 SUPERFAMILY SSF140990 442 611 7.85E-25 T 12-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AMJ96_CH02613 c34df4d1c173978163194972c6f66a03 619 Gene3D G3DSA:1.20.58.760 438 618 1.6E-30 T 12-10-2018 AMJ96_CH01115 fd6ef791ba45f86c1787ca0ce3a5ffc5 82 Pfam PF04365 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 5 77 5.0E-16 T 12-10-2018 IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system AMJ96_CH01115 fd6ef791ba45f86c1787ca0ce3a5ffc5 82 Gene3D G3DSA:3.10.450.530 1 80 1.2E-24 T 12-10-2018 IPR038573 Ribonuclease toxin BrnT superfamily AMJ96_CH01047 cb3282099542726a16f26aea52cd5099 1126 SUPERFAMILY SSF56801 625 1118 3.53E-99 T 12-10-2018 AMJ96_CH01047 cb3282099542726a16f26aea52cd5099 1126 SMART SM00563 446 556 1.5E-16 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMJ96_CH01047 cb3282099542726a16f26aea52cd5099 1126 Pfam PF01553 Acyltransferase 431 553 1.8E-12 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMJ96_CH01047 cb3282099542726a16f26aea52cd5099 1126 Pfam PF00501 AMP-binding enzyme 635 1025 4.1E-70 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMJ96_CH01047 cb3282099542726a16f26aea52cd5099 1126 SUPERFAMILY SSF69593 402 592 1.96E-20 T 12-10-2018 AMJ96_CH01047 cb3282099542726a16f26aea52cd5099 1126 Gene3D G3DSA:3.40.50.12780 613 1020 2.6E-82 T 12-10-2018 AMJ96_CH01047 cb3282099542726a16f26aea52cd5099 1126 SUPERFAMILY SSF103473 9 414 1.57E-20 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH01047 cb3282099542726a16f26aea52cd5099 1126 Gene3D G3DSA:3.30.300.30 1022 1122 1.7E-6 T 12-10-2018 AMJ96_CH01047 cb3282099542726a16f26aea52cd5099 1126 Pfam PF07690 Major Facilitator Superfamily 9 376 2.0E-12 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH01047 cb3282099542726a16f26aea52cd5099 1126 Gene3D G3DSA:1.20.1250.20 2 412 1.3E-18 T 12-10-2018 AMJ96_CH01047 cb3282099542726a16f26aea52cd5099 1126 ProSitePatterns PS00455 Putative AMP-binding domain signature. 785 796 - T 12-10-2018 IPR020845 AMP-binding, conserved site AMJ96_CH03451 1d41dea092bb9f68af6f31043d65645f 234 SUPERFAMILY SSF48498 103 226 1.78E-35 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH03451 1d41dea092bb9f68af6f31043d65645f 234 Gene3D G3DSA:1.10.10.60 8 68 2.8E-22 T 12-10-2018 AMJ96_CH03451 1d41dea092bb9f68af6f31043d65645f 234 SUPERFAMILY SSF46689 11 85 2.21E-18 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03451 1d41dea092bb9f68af6f31043d65645f 234 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 68 9.3E-12 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH03451 1d41dea092bb9f68af6f31043d65645f 234 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 8.4E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH03451 1d41dea092bb9f68af6f31043d65645f 234 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 8.4E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH03451 1d41dea092bb9f68af6f31043d65645f 234 Gene3D G3DSA:1.10.357.10 72 227 1.2E-38 T 12-10-2018 AMJ96_CH03451 1d41dea092bb9f68af6f31043d65645f 234 Pfam PF09209 Domain of unknown function (DUF1956) 107 225 2.3E-39 T 12-10-2018 IPR015292 Transcription regulator YbiH, C-terminal AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 Gene3D G3DSA:3.30.450.20 273 414 3.0E-32 T 12-10-2018 AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 Pfam PF13426 PAS domain 36 133 3.1E-7 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 SUPERFAMILY SSF55785 132 258 3.93E-25 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 SUPERFAMILY SSF55073 412 569 9.42E-45 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 Gene3D G3DSA:3.30.70.270 415 571 3.4E-51 T 12-10-2018 AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 SMART SM00267 396 570 3.4E-65 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 SMART SM00086 93 135 3.3 T 12-10-2018 IPR001610 PAC motif AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 SMART SM00086 346 389 3.6E-7 T 12-10-2018 IPR001610 PAC motif AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 SMART SM00086 219 261 1.1E-5 T 12-10-2018 IPR001610 PAC motif AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 403 569 6.9E-51 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 269 396 3.9E-24 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 145 268 4.8E-21 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 29 142 1.4E-11 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 Pfam PF00989 PAS fold 148 258 8.7E-16 T 12-10-2018 IPR013767 PAS fold GO:0006355 AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 Gene3D G3DSA:3.30.450.20 26 145 5.1E-16 T 12-10-2018 AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 SUPERFAMILY SSF55785 20 116 6.94E-16 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 Pfam PF08447 PAS fold 297 382 5.4E-16 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 SUPERFAMILY SSF55785 258 387 2.49E-28 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 Pfam PF00990 Diguanylate cyclase, GGDEF domain 407 566 6.3E-48 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 Gene3D G3DSA:3.30.450.20 146 272 5.1E-26 T 12-10-2018 AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 SMART SM00091 273 339 1.3E-8 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 SMART SM00091 20 86 6.1E-4 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02632 6c782156898aaa489bf18d8ff559dccc 572 SMART SM00091 147 213 8.6E-10 T 12-10-2018 IPR000014 PAS domain AMJ96_CH00358 357ea98add1dc2f97822ff775773943c 301 Gene3D G3DSA:3.40.190.290 91 290 3.2E-59 T 12-10-2018 AMJ96_CH00358 357ea98add1dc2f97822ff775773943c 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 9.7E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH00358 357ea98add1dc2f97822ff775773943c 301 SUPERFAMILY SSF46785 2 111 1.59E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00358 357ea98add1dc2f97822ff775773943c 301 Pfam PF03466 LysR substrate binding domain 88 291 9.5E-46 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH00358 357ea98add1dc2f97822ff775773943c 301 SUPERFAMILY SSF53850 90 295 1.99E-45 T 12-10-2018 AMJ96_CH00358 357ea98add1dc2f97822ff775773943c 301 Gene3D G3DSA:1.10.10.10 2 89 8.8E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00467 d22c7ce81b6056f66ab5594262712ec9 475 Gene3D G3DSA:3.40.605.10 25 465 3.4E-161 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_PD00467 d22c7ce81b6056f66ab5594262712ec9 475 Pfam PF00171 Aldehyde dehydrogenase family 13 469 3.6E-153 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_PD00467 d22c7ce81b6056f66ab5594262712ec9 475 Gene3D G3DSA:3.40.309.10 248 438 3.4E-161 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_PD00467 d22c7ce81b6056f66ab5594262712ec9 475 SUPERFAMILY SSF53720 2 470 4.58E-153 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_PD00467 d22c7ce81b6056f66ab5594262712ec9 475 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 272 283 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMJ96_CH01733 09cfec8969b3e7d50e9718a38971e9fb 69 Gene3D G3DSA:3.30.1390.20 10 66 5.6E-20 T 12-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily AMJ96_CH01733 09cfec8969b3e7d50e9718a38971e9fb 69 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 10 67 16.314 T 12-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01733 09cfec8969b3e7d50e9718a38971e9fb 69 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 13 66 5.6E-23 T 12-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01733 09cfec8969b3e7d50e9718a38971e9fb 69 SUPERFAMILY SSF55129 11 65 2.49E-17 T 12-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily AMJ96_CH01733 09cfec8969b3e7d50e9718a38971e9fb 69 PIRSF PIRSF002211 7 69 2.2E-20 T 12-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01733 09cfec8969b3e7d50e9718a38971e9fb 69 Pfam PF00327 Ribosomal protein L30p/L7e 15 63 4.6E-13 T 12-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain AMJ96_CH01242 54cf4eddf7813b060ffec8f296935b28 113 Pfam PF12680 SnoaL-like domain 11 104 1.3E-7 T 12-10-2018 IPR037401 SnoaL-like domain AMJ96_CH01242 54cf4eddf7813b060ffec8f296935b28 113 Gene3D G3DSA:3.10.450.50 3 113 7.8E-16 T 12-10-2018 AMJ96_CH01242 54cf4eddf7813b060ffec8f296935b28 113 SUPERFAMILY SSF54427 1 110 2.29E-15 T 12-10-2018 IPR032710 NTF2-like domain superfamily AMJ96_PD00255 d4990c4650182c2e73d5aef4945f7801 306 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 244 286 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_PD00255 d4990c4650182c2e73d5aef4945f7801 306 SUPERFAMILY SSF46689 190 240 9.86E-6 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00255 d4990c4650182c2e73d5aef4945f7801 306 SUPERFAMILY SSF51182 26 104 4.0E-10 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_PD00255 d4990c4650182c2e73d5aef4945f7801 306 SMART SM00342 207 290 1.1E-23 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PD00255 d4990c4650182c2e73d5aef4945f7801 306 Pfam PF12833 Helix-turn-helix domain 213 291 1.9E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PD00255 d4990c4650182c2e73d5aef4945f7801 306 SUPERFAMILY SSF46689 243 296 4.93E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00255 d4990c4650182c2e73d5aef4945f7801 306 Gene3D G3DSA:1.10.10.60 188 240 2.3E-9 T 12-10-2018 AMJ96_PD00255 d4990c4650182c2e73d5aef4945f7801 306 Pfam PF07883 Cupin domain 41 90 2.2E-7 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_PD00255 d4990c4650182c2e73d5aef4945f7801 306 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 274 290 4.8E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_PD00255 d4990c4650182c2e73d5aef4945f7801 306 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 259 274 4.8E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_PD00255 d4990c4650182c2e73d5aef4945f7801 306 Gene3D G3DSA:1.10.10.60 241 296 4.5E-13 T 12-10-2018 AMJ96_PD00255 d4990c4650182c2e73d5aef4945f7801 306 Gene3D G3DSA:2.60.120.10 14 100 1.1E-9 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH02459 8b013c96a8ee92a65aa4d59f2474fb6d 318 SMART SM00861 11 176 1.0E-42 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMJ96_CH02459 8b013c96a8ee92a65aa4d59f2474fb6d 318 Pfam PF02780 Transketolase, C-terminal domain 187 307 6.4E-31 T 12-10-2018 IPR033248 Transketolase, C-terminal domain AMJ96_CH02459 8b013c96a8ee92a65aa4d59f2474fb6d 318 SUPERFAMILY SSF52518 6 176 4.81E-49 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_CH02459 8b013c96a8ee92a65aa4d59f2474fb6d 318 Pfam PF02779 Transketolase, pyrimidine binding domain 12 171 4.4E-30 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMJ96_CH02459 8b013c96a8ee92a65aa4d59f2474fb6d 318 SUPERFAMILY SSF52922 182 315 3.8E-36 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMJ96_CH02459 8b013c96a8ee92a65aa4d59f2474fb6d 318 Gene3D G3DSA:3.40.50.970 3 186 7.5E-53 T 12-10-2018 AMJ96_CH02459 8b013c96a8ee92a65aa4d59f2474fb6d 318 Gene3D G3DSA:3.40.50.920 187 318 7.7E-40 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 Pfam PF13493 Domain of unknown function (DUF4118) 405 511 1.9E-29 T 12-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 Gene3D G3DSA:1.10.287.130 657 740 4.9E-18 T 12-10-2018 AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 SUPERFAMILY SSF47384 663 737 5.3E-17 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 SUPERFAMILY SSF52402 256 378 1.93E-11 T 12-10-2018 AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 Gene3D G3DSA:3.40.50.300 23 233 9.1E-98 T 12-10-2018 AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 PRINTS PR00344 Bacterial sensor protein C-terminal signature 877 890 6.7E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 PRINTS PR00344 Bacterial sensor protein C-terminal signature 818 832 6.7E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 PRINTS PR00344 Bacterial sensor protein C-terminal signature 836 846 6.7E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 PRINTS PR00344 Bacterial sensor protein C-terminal signature 852 870 6.7E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 Gene3D G3DSA:1.20.120.620 400 505 4.6E-23 T 12-10-2018 IPR038318 KdpD, transmembrane domain superfamily AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 Pfam PF00512 His Kinase A (phospho-acceptor) domain 670 737 2.3E-14 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 SMART SM00387 781 893 6.4E-38 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 SUPERFAMILY SSF55874 727 891 4.71E-41 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 Gene3D G3DSA:3.30.565.10 745 895 4.2E-38 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 Pfam PF00582 Universal stress protein family 255 370 2.8E-6 T 12-10-2018 IPR006016 UspA AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 Pfam PF13492 GAF domain 531 650 1.6E-17 T 12-10-2018 IPR003018 GAF domain GO:0005515 AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 Gene3D G3DSA:3.40.50.620 240 378 1.3E-9 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 Gene3D G3DSA:3.30.450.40 514 656 1.1E-35 T 12-10-2018 IPR029016 GAF-like domain superfamily AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 SMART SM00388 669 737 3.5E-19 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 782 892 7.7E-23 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 SUPERFAMILY SSF55781 509 655 7.2E-9 T 12-10-2018 AMJ96_PC00273 dd28df6c2675e55890c45f980007deec 902 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 26 234 1.7E-96 T 12-10-2018 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 AMJ96_CH03515 bdba08cfad29e6650a2783729cbcc799 203 Gene3D G3DSA:3.40.50.300 8 201 6.6E-49 T 12-10-2018 AMJ96_CH03515 bdba08cfad29e6650a2783729cbcc799 203 SUPERFAMILY SSF52540 4 199 1.68E-35 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03515 bdba08cfad29e6650a2783729cbcc799 203 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 8 199 7.8E-99 T 12-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 AMJ96_CH03515 bdba08cfad29e6650a2783729cbcc799 203 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 10 180 4.1E-37 T 12-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH03515 bdba08cfad29e6650a2783729cbcc799 203 PIRSF PIRSF005624 1 202 1.1E-49 T 12-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 AMJ96_CH03515 bdba08cfad29e6650a2783729cbcc799 203 Hamap MF_01389 Urease accessory protein UreG [ureG]. 6 203 46.009 T 12-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 AMJ96_PD00207 c450b6d143dbc14950ac738f51390d71 303 SUPERFAMILY SSF141130 10 300 1.15E-76 T 12-10-2018 AMJ96_PD00207 c450b6d143dbc14950ac738f51390d71 303 Gene3D G3DSA:3.10.28.20 222 302 1.6E-11 T 12-10-2018 AMJ96_PD00207 c450b6d143dbc14950ac738f51390d71 303 Pfam PF03069 Acetamidase/Formamidase family 17 147 6.4E-9 T 12-10-2018 IPR004304 Acetamidase/Formamidase GO:0016811 AMJ96_PD00207 c450b6d143dbc14950ac738f51390d71 303 Pfam PF03069 Acetamidase/Formamidase family 151 242 3.1E-14 T 12-10-2018 IPR004304 Acetamidase/Formamidase GO:0016811 AMJ96_PD00207 c450b6d143dbc14950ac738f51390d71 303 Gene3D G3DSA:2.60.120.580 7 104 8.4E-17 T 12-10-2018 AMJ96_PD00207 c450b6d143dbc14950ac738f51390d71 303 Gene3D G3DSA:2.60.120.580 125 220 1.2E-28 T 12-10-2018 AMJ96_CH03027 41632a50c75a0a9a086dedb6a2b19130 395 Gene3D G3DSA:3.30.9.10 66 337 1.1E-56 T 12-10-2018 AMJ96_CH03027 41632a50c75a0a9a086dedb6a2b19130 395 Gene3D G3DSA:3.50.50.60 8 379 1.1E-56 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03027 41632a50c75a0a9a086dedb6a2b19130 395 SUPERFAMILY SSF51905 5 374 3.02E-25 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03027 41632a50c75a0a9a086dedb6a2b19130 395 SUPERFAMILY SSF54373 225 337 6.67E-6 T 12-10-2018 AMJ96_CH03027 41632a50c75a0a9a086dedb6a2b19130 395 Pfam PF01266 FAD dependent oxidoreductase 7 365 2.5E-31 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 190 495 5.0E-95 T 12-10-2018 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 ProSitePatterns PS01047 Heavy-metal-associated domain. 11 40 - T 12-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 Gene3D G3DSA:3.40.50.1000 422 690 3.8E-79 T 12-10-2018 IPR023214 HAD superfamily AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 PRINTS PR00941 Cadmium-transporting ATPase signature 306 322 5.3E-8 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 PRINTS PR00941 Cadmium-transporting ATPase signature 325 339 5.3E-8 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 PRINTS PR00941 Cadmium-transporting ATPase signature 9 18 5.3E-8 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 PRINTS PR00941 Cadmium-transporting ATPase signature 225 245 5.3E-8 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 SUPERFAMILY SSF55008 3 73 4.58E-16 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 564 575 5.8E-30 T 12-10-2018 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 441 455 5.8E-30 T 12-10-2018 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 586 596 5.8E-30 T 12-10-2018 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 638 657 5.8E-30 T 12-10-2018 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 290 304 5.8E-30 T 12-10-2018 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 661 673 5.8E-30 T 12-10-2018 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 SUPERFAMILY SSF81665 192 725 4.71E-16 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 Pfam PF00122 E1-E2 ATPase 241 421 3.0E-50 T 12-10-2018 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 Gene3D G3DSA:3.40.1110.10 452 571 3.8E-79 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 Pfam PF00702 haloacid dehalogenase-like hydrolase 438 652 1.3E-34 T 12-10-2018 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 443 449 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 SUPERFAMILY SSF56784 439 738 3.61E-51 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 540 716 4.0E-37 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 213 475 2.5E-39 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 190 740 2.1E-172 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 Gene3D G3DSA:2.70.150.20 229 344 5.9E-33 T 12-10-2018 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 SUPERFAMILY SSF81653 243 340 7.85E-24 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 Pfam PF00403 Heavy-metal-associated domain 9 67 3.2E-12 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 208 740 1.0E-121 T 12-10-2018 AMJ96_CH03975 78e027cb479d5c0b716fe2bfa0162f58 745 Gene3D G3DSA:3.30.70.100 6 71 2.2E-15 T 12-10-2018 AMJ96_PA00273 fd902818559f250f14e465ab06c4a933 303 SUPERFAMILY SSF53850 91 302 4.96E-33 T 12-10-2018 AMJ96_PA00273 fd902818559f250f14e465ab06c4a933 303 SUPERFAMILY SSF46785 4 112 1.43E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PA00273 fd902818559f250f14e465ab06c4a933 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 4.2E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PA00273 fd902818559f250f14e465ab06c4a933 303 Gene3D G3DSA:1.10.10.10 3 92 2.6E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PA00273 fd902818559f250f14e465ab06c4a933 303 Gene3D G3DSA:3.40.190.10 93 296 1.4E-50 T 12-10-2018 AMJ96_PA00273 fd902818559f250f14e465ab06c4a933 303 Pfam PF03466 LysR substrate binding domain 89 299 1.5E-28 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PA00273 fd902818559f250f14e465ab06c4a933 303 Gene3D G3DSA:3.40.190.10 166 272 1.4E-50 T 12-10-2018 AMJ96_PC00173 dfbd3b25095ff5ef5fa5d09814c937fa 547 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 20 57 4.4E-6 T 12-10-2018 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal AMJ96_CH01053 35f511177f2988220570e923ab9a0f33 450 SUPERFAMILY SSF46626 329 450 2.36E-21 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_CH01053 35f511177f2988220570e923ab9a0f33 450 Gene3D G3DSA:1.10.760.10 336 450 1.1E-15 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_CH03867 d7d53e108783f109075742e75b87fb4f 456 Pfam PF05598 Transposase domain (DUF772) 52 127 3.6E-23 T 12-10-2018 IPR008490 Transposase InsH, N-terminal AMJ96_CH03867 d7d53e108783f109075742e75b87fb4f 456 Pfam PF13751 Transposase DDE domain 325 443 1.2E-22 T 12-10-2018 IPR025668 Transposase DDE domain AMJ96_CH00388 d7d53e108783f109075742e75b87fb4f 456 Pfam PF05598 Transposase domain (DUF772) 52 127 3.6E-23 T 12-10-2018 IPR008490 Transposase InsH, N-terminal AMJ96_CH00388 d7d53e108783f109075742e75b87fb4f 456 Pfam PF13751 Transposase DDE domain 325 443 1.2E-22 T 12-10-2018 IPR025668 Transposase DDE domain AMJ96_CH02170 d7d53e108783f109075742e75b87fb4f 456 Pfam PF05598 Transposase domain (DUF772) 52 127 3.6E-23 T 12-10-2018 IPR008490 Transposase InsH, N-terminal AMJ96_CH02170 d7d53e108783f109075742e75b87fb4f 456 Pfam PF13751 Transposase DDE domain 325 443 1.2E-22 T 12-10-2018 IPR025668 Transposase DDE domain AMJ96_CH00268 d7d53e108783f109075742e75b87fb4f 456 Pfam PF05598 Transposase domain (DUF772) 52 127 3.6E-23 T 12-10-2018 IPR008490 Transposase InsH, N-terminal AMJ96_CH00268 d7d53e108783f109075742e75b87fb4f 456 Pfam PF13751 Transposase DDE domain 325 443 1.2E-22 T 12-10-2018 IPR025668 Transposase DDE domain AMJ96_CH03458 dd5ad20cc0c452fc4f5a4f8560a7f681 261 Gene3D G3DSA:3.40.50.880 1 245 4.7E-104 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH03458 dd5ad20cc0c452fc4f5a4f8560a7f681 261 PIRSF PIRSF030013 1 248 8.7E-131 T 12-10-2018 IPR009381 Trehalose catabolism protein, ThuA, prokaryote AMJ96_CH03458 dd5ad20cc0c452fc4f5a4f8560a7f681 261 Pfam PF06283 Trehalose utilisation 13 220 2.5E-31 T 12-10-2018 IPR029010 ThuA-like domain AMJ96_CH03458 dd5ad20cc0c452fc4f5a4f8560a7f681 261 SUPERFAMILY SSF52317 3 238 2.2E-58 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH04228 ed72987070489585c42707d0266a8d63 169 SUPERFAMILY SSF55826 8 167 6.8E-47 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMJ96_CH04228 ed72987070489585c42707d0266a8d63 169 Gene3D G3DSA:3.90.960.10 2 169 1.9E-51 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMJ96_CH04228 ed72987070489585c42707d0266a8d63 169 Pfam PF04073 Aminoacyl-tRNA editing domain 28 154 7.4E-25 T 12-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMJ96_CH01300 b5a492ed136be7606243d7f2d889ec00 114 Pfam PF07372 Protein of unknown function (DUF1491) 3 107 2.0E-28 T 12-10-2018 IPR009964 Protein of unknown function DUF1491 AMJ96_CH01300 b5a492ed136be7606243d7f2d889ec00 114 Gene3D G3DSA:3.40.1530.20 1 114 6.2E-38 T 12-10-2018 AMJ96_CH03109 f0d36af8153ed5c6eea536134025212f 265 SMART SM00342 178 260 4.5E-25 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH03109 f0d36af8153ed5c6eea536134025212f 265 Gene3D G3DSA:2.60.120.10 1 89 1.5E-5 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH03109 f0d36af8153ed5c6eea536134025212f 265 Pfam PF12833 Helix-turn-helix domain 184 259 5.9E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH03109 f0d36af8153ed5c6eea536134025212f 265 SUPERFAMILY SSF51215 9 149 9.42E-22 T 12-10-2018 IPR037923 Transcription regulator HTH-like AMJ96_CH03109 f0d36af8153ed5c6eea536134025212f 265 Pfam PF02311 AraC-like ligand binding domain 17 144 4.1E-23 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMJ96_CH03109 f0d36af8153ed5c6eea536134025212f 265 SUPERFAMILY SSF46689 164 212 2.3E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03109 f0d36af8153ed5c6eea536134025212f 265 Gene3D G3DSA:1.10.10.60 221 262 1.9E-9 T 12-10-2018 AMJ96_CH03109 f0d36af8153ed5c6eea536134025212f 265 SUPERFAMILY SSF46689 215 260 3.32E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03109 f0d36af8153ed5c6eea536134025212f 265 Gene3D G3DSA:1.10.10.60 161 220 4.7E-13 T 12-10-2018 AMJ96_CH04335 26409234510c39f8c63ec80d58d5cd44 177 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 7 172 34.291 T 12-10-2018 IPR022927 RNA pyrophosphohydrolase RppH AMJ96_CH04335 26409234510c39f8c63ec80d58d5cd44 177 Gene3D G3DSA:3.90.79.10 2 170 6.1E-41 T 12-10-2018 AMJ96_CH04335 26409234510c39f8c63ec80d58d5cd44 177 SUPERFAMILY SSF55811 8 169 2.84E-30 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_CH04335 26409234510c39f8c63ec80d58d5cd44 177 Pfam PF00293 NUDIX domain 13 162 1.8E-23 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMJ96_CH04335 26409234510c39f8c63ec80d58d5cd44 177 PRINTS PR00502 NUDIX hydrolase family signature 48 62 2.8E-6 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMJ96_CH04335 26409234510c39f8c63ec80d58d5cd44 177 PRINTS PR00502 NUDIX hydrolase family signature 62 77 2.8E-6 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMJ96_CH04335 26409234510c39f8c63ec80d58d5cd44 177 ProSitePatterns PS00893 Nudix box signature. 53 74 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMJ96_CH03957 8631f2528ce74ce33d92f78190467d06 341 SMART SM00354 8 71 2.1E-4 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03957 8631f2528ce74ce33d92f78190467d06 341 SUPERFAMILY SSF47413 7 47 3.38E-8 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH03957 8631f2528ce74ce33d92f78190467d06 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 47 5.5E-11 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03957 8631f2528ce74ce33d92f78190467d06 341 Gene3D G3DSA:3.40.50.2300 96 328 1.3E-30 T 12-10-2018 AMJ96_CH03957 8631f2528ce74ce33d92f78190467d06 341 Pfam PF13407 Periplasmic binding protein domain 104 309 3.7E-30 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_CH03957 8631f2528ce74ce33d92f78190467d06 341 Gene3D G3DSA:1.10.260.40 2 50 8.3E-12 T 12-10-2018 AMJ96_CH03957 8631f2528ce74ce33d92f78190467d06 341 SUPERFAMILY SSF53822 104 319 9.16E-29 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH03957 8631f2528ce74ce33d92f78190467d06 341 Gene3D G3DSA:3.40.50.2300 165 337 1.3E-30 T 12-10-2018 AMJ96_PC00465 3e3cb23489fa36c7be8fc5c5b6dd167c 254 PIRSF PIRSF036525 1 253 1.5E-109 T 12-10-2018 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase GO:0009236|GO:0043819 KEGG: 00860+2.1.1.152|MetaCyc: PWY-7376 AMJ96_PC00465 3e3cb23489fa36c7be8fc5c5b6dd167c 254 Gene3D G3DSA:3.40.1010.10 1 142 6.9E-43 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMJ96_PC00465 3e3cb23489fa36c7be8fc5c5b6dd167c 254 TIGRFAM TIGR02434 CobF: precorrin-6A synthase (deacetylating) 2 248 4.0E-107 T 12-10-2018 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase GO:0009236|GO:0043819 KEGG: 00860+2.1.1.152|MetaCyc: PWY-7376 AMJ96_PC00465 3e3cb23489fa36c7be8fc5c5b6dd167c 254 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 222 1.2E-30 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMJ96_PC00465 3e3cb23489fa36c7be8fc5c5b6dd167c 254 Gene3D G3DSA:3.30.950.10 143 251 2.3E-42 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AMJ96_PC00465 3e3cb23489fa36c7be8fc5c5b6dd167c 254 SUPERFAMILY SSF53790 3 247 7.85E-36 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMJ96_CH02950 225307f58186bdf6ca629e267a9cbc4b 197 Pfam PF01810 LysE type translocator 16 189 5.6E-17 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMJ96_CH01436 94326a2b682c9f8e4adcd330c9ed8072 250 SUPERFAMILY SSF46785 160 237 1.32E-10 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01436 94326a2b682c9f8e4adcd330c9ed8072 250 Pfam PF00027 Cyclic nucleotide-binding domain 46 130 4.7E-12 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_CH01436 94326a2b682c9f8e4adcd330c9ed8072 250 Pfam PF13545 Crp-like helix-turn-helix domain 167 235 1.9E-10 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_CH01436 94326a2b682c9f8e4adcd330c9ed8072 250 SUPERFAMILY SSF51206 17 157 4.71E-27 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like AMJ96_CH01436 94326a2b682c9f8e4adcd330c9ed8072 250 Gene3D G3DSA:2.60.120.10 41 158 1.4E-27 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH01436 94326a2b682c9f8e4adcd330c9ed8072 250 Gene3D G3DSA:1.10.10.10 159 240 1.1E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03596 b3eaa3ca7b830a807bd3b12e3274717c 359 SUPERFAMILY SSF52540 4 242 4.79E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03596 b3eaa3ca7b830a807bd3b12e3274717c 359 Pfam PF08402 TOBE domain 278 347 3.2E-9 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_CH03596 b3eaa3ca7b830a807bd3b12e3274717c 359 SUPERFAMILY SSF50331 237 354 2.36E-25 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH03596 b3eaa3ca7b830a807bd3b12e3274717c 359 Gene3D G3DSA:2.40.50.140 294 338 2.1E-22 T 12-10-2018 AMJ96_CH03596 b3eaa3ca7b830a807bd3b12e3274717c 359 Gene3D G3DSA:3.40.50.300 1 238 9.5E-77 T 12-10-2018 AMJ96_CH03596 b3eaa3ca7b830a807bd3b12e3274717c 359 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03596 b3eaa3ca7b830a807bd3b12e3274717c 359 SMART SM00382 28 219 1.2E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03596 b3eaa3ca7b830a807bd3b12e3274717c 359 Pfam PF00005 ABC transporter 19 161 2.1E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03596 b3eaa3ca7b830a807bd3b12e3274717c 359 Gene3D G3DSA:2.40.50.100 239 350 2.1E-22 T 12-10-2018 AMJ96_CH00058 c4d610a7dd4303eaff2c94c4d81e25c0 821 Gene3D G3DSA:3.40.50.300 187 352 7.7E-53 T 12-10-2018 AMJ96_CH00058 c4d610a7dd4303eaff2c94c4d81e25c0 821 SUPERFAMILY SSF52540 22 346 2.85E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00058 c4d610a7dd4303eaff2c94c4d81e25c0 821 SMART SM00487 8 193 3.3E-20 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMJ96_CH00058 c4d610a7dd4303eaff2c94c4d81e25c0 821 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 10 820 1.1E-300 T 12-10-2018 IPR010225 ATP-dependent helicase HrpB GO:0008026 AMJ96_CH00058 c4d610a7dd4303eaff2c94c4d81e25c0 821 Pfam PF04408 Helicase associated domain (HA2) 396 456 5.5E-8 T 12-10-2018 IPR007502 Helicase-associated domain GO:0004386 AMJ96_CH00058 c4d610a7dd4303eaff2c94c4d81e25c0 821 Gene3D G3DSA:1.20.120.1080 379 479 7.8E-11 T 12-10-2018 AMJ96_CH00058 c4d610a7dd4303eaff2c94c4d81e25c0 821 PIRSF PIRSF005496 5 821 0.0 T 12-10-2018 AMJ96_CH00058 c4d610a7dd4303eaff2c94c4d81e25c0 821 SMART SM00490 233 335 8.9E-19 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH00058 c4d610a7dd4303eaff2c94c4d81e25c0 821 Pfam PF00271 Helicase conserved C-terminal domain 215 334 4.9E-15 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH00058 c4d610a7dd4303eaff2c94c4d81e25c0 821 SMART SM00847 395 484 8.0E-13 T 12-10-2018 IPR007502 Helicase-associated domain GO:0004386 AMJ96_CH00058 c4d610a7dd4303eaff2c94c4d81e25c0 821 Gene3D G3DSA:3.40.50.300 2 186 3.3E-53 T 12-10-2018 AMJ96_CH00058 c4d610a7dd4303eaff2c94c4d81e25c0 821 Pfam PF00270 DEAD/DEAH box helicase 22 171 6.4E-8 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMJ96_CH00058 c4d610a7dd4303eaff2c94c4d81e25c0 821 Pfam PF08482 ATP-dependent helicase C-terminal 676 807 6.2E-47 T 12-10-2018 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal AMJ96_CH03895 8de4988aa92b8c6206d076bae368eec7 395 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 15 142 2.0E-20 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_CH03895 8de4988aa92b8c6206d076bae368eec7 395 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 157 231 4.9E-7 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AMJ96_CH03895 8de4988aa92b8c6206d076bae368eec7 395 SUPERFAMILY SSF55347 151 335 2.29E-37 T 12-10-2018 AMJ96_CH03895 8de4988aa92b8c6206d076bae368eec7 395 Gene3D G3DSA:3.30.360.10 150 393 1.0E-136 T 12-10-2018 AMJ96_CH03895 8de4988aa92b8c6206d076bae368eec7 395 Gene3D G3DSA:3.40.50.720 20 368 1.0E-136 T 12-10-2018 AMJ96_CH03895 8de4988aa92b8c6206d076bae368eec7 395 SUPERFAMILY SSF51735 12 177 2.14E-36 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03313 30ac6c9ff41cc4061dce93d8ad937eeb 313 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 309 4.2E-86 T 12-10-2018 IPR007296 Domain of unknown function DUF403 AMJ96_CH02286 8b52eaa884d09708fde4f164b9d8d1ce 669 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 1.0E-81 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMJ96_CH02286 8b52eaa884d09708fde4f164b9d8d1ce 669 SUPERFAMILY SSF52440 1 113 3.38E-47 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMJ96_CH02286 8b52eaa884d09708fde4f164b9d8d1ce 669 Gene3D G3DSA:2.40.50.100 602 668 2.6E-20 T 12-10-2018 AMJ96_CH02286 8b52eaa884d09708fde4f164b9d8d1ce 669 SMART SM00878 336 447 4.7E-55 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_CH02286 8b52eaa884d09708fde4f164b9d8d1ce 669 Gene3D G3DSA:3.30.700.30 454 589 3.3E-22 T 12-10-2018 AMJ96_CH02286 8b52eaa884d09708fde4f164b9d8d1ce 669 SUPERFAMILY SSF51246 331 450 8.89E-39 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMJ96_CH02286 8b52eaa884d09708fde4f164b9d8d1ce 669 SUPERFAMILY SSF51230 590 668 7.46E-18 T 12-10-2018 IPR011053 Single hybrid motif AMJ96_CH02286 8b52eaa884d09708fde4f164b9d8d1ce 669 Gene3D G3DSA:3.30.470.130 1 452 1.6E-197 T 12-10-2018 AMJ96_CH02286 8b52eaa884d09708fde4f164b9d8d1ce 669 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 2.5E-44 T 12-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_CH02286 8b52eaa884d09708fde4f164b9d8d1ce 669 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMJ96_CH02286 8b52eaa884d09708fde4f164b9d8d1ce 669 Pfam PF00364 Biotin-requiring enzyme 605 667 1.2E-12 T 12-10-2018 IPR000089 Biotin/lipoyl attachment AMJ96_CH02286 8b52eaa884d09708fde4f164b9d8d1ce 669 SUPERFAMILY SSF56059 83 348 4.24E-70 T 12-10-2018 AMJ96_CH02286 8b52eaa884d09708fde4f164b9d8d1ce 669 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 625 642 - T 12-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_CH02286 8b52eaa884d09708fde4f164b9d8d1ce 669 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMJ96_CH02286 8b52eaa884d09708fde4f164b9d8d1ce 669 Pfam PF02785 Biotin carboxylase C-terminal domain 336 447 1.6E-34 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_PC00184 c081b5660c113a700696a69d0723fb8e 869 Pfam PF00501 AMP-binding enzyme 12 80 2.3E-8 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMJ96_PC00184 c081b5660c113a700696a69d0723fb8e 869 Pfam PF00501 AMP-binding enzyme 118 374 1.9E-42 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMJ96_PC00184 c081b5660c113a700696a69d0723fb8e 869 ProSitePatterns PS00455 Putative AMP-binding domain signature. 128 139 - T 12-10-2018 IPR020845 AMP-binding, conserved site AMJ96_PC00184 c081b5660c113a700696a69d0723fb8e 869 SUPERFAMILY SSF56801 11 461 2.49E-71 T 12-10-2018 AMJ96_PC00184 c081b5660c113a700696a69d0723fb8e 869 ProSitePatterns PS00012 Phosphopantetheine attachment site. 495 510 - T 12-10-2018 IPR006162 Phosphopantetheine attachment site AMJ96_PC00184 c081b5660c113a700696a69d0723fb8e 869 SUPERFAMILY SSF47336 474 518 5.63E-5 T 12-10-2018 IPR036736 ACP-like superfamily AMJ96_PC00184 c081b5660c113a700696a69d0723fb8e 869 Gene3D G3DSA:3.40.50.12780 8 374 6.9E-63 T 12-10-2018 AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 SUPERFAMILY SSF54862 93 243 3.89E-37 T 12-10-2018 AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 SMART SM00926 248 302 8.8E-14 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 221 232 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 SUPERFAMILY SSF54292 19 92 3.57E-19 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 SMART SM00929 101 141 3.1E-19 T 12-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 253 928 6.7E-294 T 12-10-2018 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.17.1.9|KEGG: 00680+1.17.1.9|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696|MetaCyc: PWY-7985 AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 Gene3D G3DSA:3.40.228.10 385 592 2.8E-171 T 12-10-2018 AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 Gene3D G3DSA:2.40.40.20 817 930 1.8E-33 T 12-10-2018 AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 Pfam PF01568 Molydopterin dinucleotide binding domain 820 924 6.6E-27 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 101 140 1.6E-16 T 12-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 Gene3D G3DSA:3.10.20.740 19 140 3.1E-38 T 12-10-2018 AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 SUPERFAMILY SSF50692 785 929 3.39E-40 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 Gene3D G3DSA:3.30.70.20 158 239 2.7E-23 T 12-10-2018 AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 PIRSF PIRSF036643 15 958 0.0 T 12-10-2018 AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 Gene3D G3DSA:3.40.50.740 310 779 2.8E-171 T 12-10-2018 AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 178 189 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 Pfam PF00037 4Fe-4S binding domain 219 235 2.3E-5 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 Pfam PF00384 Molybdopterin oxidoreductase 305 735 8.6E-75 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 18 94 4.7E-24 T 12-10-2018 AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 250 299 4.2E-14 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 Gene3D G3DSA:2.20.25.90 250 301 1.7E-15 T 12-10-2018 AMJ96_CH04104 44c2f822d427d83d040973953de2071f 959 SUPERFAMILY SSF53706 250 775 5.37E-193 T 12-10-2018 AMJ96_CH01264 cc10a992b9b73ce64c2e142db8f1c570 779 ProSitePatterns PS00363 Bacterial quinoprotein dehydrogenases signature 1. 165 193 - T 12-10-2018 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 AMJ96_CH01264 cc10a992b9b73ce64c2e142db8f1c570 779 Gene3D G3DSA:2.140.10.10 160 550 6.4E-113 T 12-10-2018 AMJ96_CH01264 cc10a992b9b73ce64c2e142db8f1c570 779 Gene3D G3DSA:2.140.10.10 553 779 2.1E-34 T 12-10-2018 AMJ96_CH01264 cc10a992b9b73ce64c2e142db8f1c570 779 Pfam PF13360 PQQ-like domain 211 500 1.9E-11 T 12-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMJ96_CH01264 cc10a992b9b73ce64c2e142db8f1c570 779 SUPERFAMILY SSF50998 160 779 1.57E-149 T 12-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AMJ96_CH01264 cc10a992b9b73ce64c2e142db8f1c570 779 SMART SM00564 402 452 310.0 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMJ96_CH01264 cc10a992b9b73ce64c2e142db8f1c570 779 SMART SM00564 278 308 640.0 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMJ96_CH01264 cc10a992b9b73ce64c2e142db8f1c570 779 SMART SM00564 701 734 1.0 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMJ96_CH01264 cc10a992b9b73ce64c2e142db8f1c570 779 SMART SM00564 333 374 1.3 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMJ96_CH01264 cc10a992b9b73ce64c2e142db8f1c570 779 SMART SM00564 218 249 0.13 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMJ96_CH01264 cc10a992b9b73ce64c2e142db8f1c570 779 Pfam PF01011 PQQ enzyme repeat 707 744 3.4E-6 T 12-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMJ96_CH01264 cc10a992b9b73ce64c2e142db8f1c570 779 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 5 779 0.0 T 12-10-2018 IPR017511 PQQ-dependent membrane bound dehydrogenase GO:0016021|GO:0016614|GO:0048038|GO:0055114 AMJ96_CH00651 11bfdcf1593810c994e421640285a907 511 SUPERFAMILY SSF52540 282 492 8.39E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00651 11bfdcf1593810c994e421640285a907 511 ProSitePatterns PS00211 ABC transporters family signature. 406 420 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00651 11bfdcf1593810c994e421640285a907 511 Gene3D G3DSA:3.40.50.300 274 509 2.3E-41 T 12-10-2018 AMJ96_CH00651 11bfdcf1593810c994e421640285a907 511 Pfam PF00005 ABC transporter 30 179 2.6E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00651 11bfdcf1593810c994e421640285a907 511 Gene3D G3DSA:3.40.50.300 2 240 1.3E-54 T 12-10-2018 AMJ96_CH00651 11bfdcf1593810c994e421640285a907 511 SUPERFAMILY SSF52540 13 235 2.5E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00651 11bfdcf1593810c994e421640285a907 511 SMART SM00382 39 235 8.8E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00651 11bfdcf1593810c994e421640285a907 511 SMART SM00382 288 498 1.1E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00651 11bfdcf1593810c994e421640285a907 511 Pfam PF00005 ABC transporter 282 433 1.6E-18 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03684 ee1c57ede196044cdddf648649b0147a 254 SUPERFAMILY SSF52540 3 246 7.24E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03684 ee1c57ede196044cdddf648649b0147a 254 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03684 ee1c57ede196044cdddf648649b0147a 254 Gene3D G3DSA:3.40.50.300 3 250 8.8E-56 T 12-10-2018 AMJ96_CH03684 ee1c57ede196044cdddf648649b0147a 254 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 224 245 2.6E-7 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMJ96_CH03684 ee1c57ede196044cdddf648649b0147a 254 Pfam PF00005 ABC transporter 21 175 4.6E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03684 ee1c57ede196044cdddf648649b0147a 254 SMART SM00382 29 222 7.5E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00395 5076a9cb500f352b9fb1e0ceb0498490 366 Pfam PF14031 Putative serine dehydratase domain 256 347 3.2E-23 T 12-10-2018 IPR026956 D-serine dehydratase-like domain AMJ96_PC00395 5076a9cb500f352b9fb1e0ceb0498490 366 Gene3D G3DSA:3.20.20.10 28 239 3.3E-105 T 12-10-2018 IPR029066 PLP-binding barrel AMJ96_PC00395 5076a9cb500f352b9fb1e0ceb0498490 366 SMART SM01119 256 349 1.3E-33 T 12-10-2018 IPR026956 D-serine dehydratase-like domain AMJ96_PC00395 5076a9cb500f352b9fb1e0ceb0498490 366 SUPERFAMILY SSF51419 26 250 2.62E-38 T 12-10-2018 IPR029066 PLP-binding barrel AMJ96_PC00395 5076a9cb500f352b9fb1e0ceb0498490 366 Gene3D G3DSA:2.40.37.20 19 362 3.3E-105 T 12-10-2018 AMJ96_PC00395 5076a9cb500f352b9fb1e0ceb0498490 366 Pfam PF01168 Alanine racemase, N-terminal domain 26 242 1.3E-31 T 12-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_CH02165 c75c7a8b8594dfcc1ecf60e114f52f85 973 ProSitePatterns PS00211 ABC transporters family signature. 851 865 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02165 c75c7a8b8594dfcc1ecf60e114f52f85 973 SUPERFAMILY SSF52540 6 591 3.46E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02165 c75c7a8b8594dfcc1ecf60e114f52f85 973 Gene3D G3DSA:1.20.1580.10 93 514 2.7E-245 T 12-10-2018 AMJ96_CH02165 c75c7a8b8594dfcc1ecf60e114f52f85 973 Gene3D G3DSA:1.10.8.280 308 423 2.7E-245 T 12-10-2018 AMJ96_CH02165 c75c7a8b8594dfcc1ecf60e114f52f85 973 SUPERFAMILY SSF52540 642 931 1.01E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02165 c75c7a8b8594dfcc1ecf60e114f52f85 973 Gene3D G3DSA:1.20.1580.10 713 851 5.0E-139 T 12-10-2018 AMJ96_CH02165 c75c7a8b8594dfcc1ecf60e114f52f85 973 Pfam PF00005 ABC transporter 827 881 1.0E-5 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02165 c75c7a8b8594dfcc1ecf60e114f52f85 973 Gene3D G3DSA:3.30.190.20 133 242 2.7E-245 T 12-10-2018 AMJ96_CH02165 c75c7a8b8594dfcc1ecf60e114f52f85 973 Gene3D G3DSA:3.40.50.300 9 616 2.7E-245 T 12-10-2018 AMJ96_CH02165 c75c7a8b8594dfcc1ecf60e114f52f85 973 Gene3D G3DSA:3.40.50.300 638 957 5.0E-139 T 12-10-2018 AMJ96_CH02165 c75c7a8b8594dfcc1ecf60e114f52f85 973 ProSitePatterns PS00211 ABC transporters family signature. 509 523 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02165 c75c7a8b8594dfcc1ecf60e114f52f85 973 Hamap MF_00205 UvrABC system protein A [uvrA]. 4 961 22.613 T 12-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 AMJ96_CH02165 c75c7a8b8594dfcc1ecf60e114f52f85 973 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 7 945 0.0 T 12-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 AMJ96_CH03502 484b747612c4c591273b597433d9f47d 619 Gene3D G3DSA:1.20.58.760 439 619 4.8E-31 T 12-10-2018 AMJ96_CH03502 484b747612c4c591273b597433d9f47d 619 Pfam PF01434 Peptidase family M41 447 610 3.9E-16 T 12-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AMJ96_CH03502 484b747612c4c591273b597433d9f47d 619 SMART SM00382 230 371 1.2E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03502 484b747612c4c591273b597433d9f47d 619 Gene3D G3DSA:3.40.50.300 231 369 1.9E-36 T 12-10-2018 AMJ96_CH03502 484b747612c4c591273b597433d9f47d 619 SUPERFAMILY SSF140990 442 611 6.41E-25 T 12-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AMJ96_CH03502 484b747612c4c591273b597433d9f47d 619 ProSitePatterns PS00674 AAA-protein family signature. 339 357 - T 12-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 AMJ96_CH03502 484b747612c4c591273b597433d9f47d 619 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 234 368 4.4E-23 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMJ96_CH03502 484b747612c4c591273b597433d9f47d 619 SUPERFAMILY SSF52540 228 423 8.91E-34 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03502 484b747612c4c591273b597433d9f47d 619 Gene3D G3DSA:1.10.8.60 370 418 1.9E-36 T 12-10-2018 AMJ96_CH03978 15520a574acbb13f8b4db05950f6bee8 319 SUPERFAMILY SSF46689 275 318 6.87E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03978 15520a574acbb13f8b4db05950f6bee8 319 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 299 319 3.2E-11 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMJ96_CH03978 15520a574acbb13f8b4db05950f6bee8 319 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 282 299 3.2E-11 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMJ96_CH03978 15520a574acbb13f8b4db05950f6bee8 319 Pfam PF01590 GAF domain 73 201 6.0E-7 T 12-10-2018 IPR003018 GAF domain GO:0005515 AMJ96_CH03978 15520a574acbb13f8b4db05950f6bee8 319 SUPERFAMILY SSF55781 62 205 3.06E-13 T 12-10-2018 AMJ96_CH03978 15520a574acbb13f8b4db05950f6bee8 319 Gene3D G3DSA:3.30.450.40 13 202 1.2E-47 T 12-10-2018 IPR029016 GAF-like domain superfamily AMJ96_CH03978 15520a574acbb13f8b4db05950f6bee8 319 Pfam PF02954 Bacterial regulatory protein, Fis family 278 316 7.1E-13 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMJ96_CH03978 15520a574acbb13f8b4db05950f6bee8 319 Gene3D G3DSA:1.10.10.60 275 318 4.1E-15 T 12-10-2018 AMJ96_CH00396 429fc4163d01c114021ea30a56e3c7ce 142 SUPERFAMILY SSF46785 8 135 6.35E-38 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00396 429fc4163d01c114021ea30a56e3c7ce 142 Gene3D G3DSA:3.30.1490.190 88 140 8.7E-21 T 12-10-2018 AMJ96_CH00396 429fc4163d01c114021ea30a56e3c7ce 142 Pfam PF01475 Ferric uptake regulator family 14 133 1.5E-44 T 12-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AMJ96_CH00396 429fc4163d01c114021ea30a56e3c7ce 142 Gene3D G3DSA:1.10.10.10 2 87 2.0E-34 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03228 8c4e6e0554b9149420116a25b3084b65 304 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 15 290 1.7E-70 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMJ96_CH03228 8c4e6e0554b9149420116a25b3084b65 304 Pfam PF16916 Dimerisation domain of Zinc Transporter 213 289 4.5E-24 T 12-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain AMJ96_CH03228 8c4e6e0554b9149420116a25b3084b65 304 SUPERFAMILY SSF160240 210 289 3.14E-23 T 12-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 AMJ96_CH03228 8c4e6e0554b9149420116a25b3084b65 304 SUPERFAMILY SSF161111 10 208 1.83E-53 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMJ96_CH03228 8c4e6e0554b9149420116a25b3084b65 304 Gene3D G3DSA:1.20.1510.10 9 206 7.1E-54 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMJ96_CH03228 8c4e6e0554b9149420116a25b3084b65 304 Gene3D G3DSA:3.30.70.1350 207 295 2.9E-31 T 12-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 AMJ96_CH03228 8c4e6e0554b9149420116a25b3084b65 304 Pfam PF01545 Cation efflux family 19 207 1.5E-42 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMJ96_CH02566 c6eb4daf0310ba59729528fcc4dcd5d2 299 Pfam PF03466 LysR substrate binding domain 97 289 2.7E-25 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH02566 c6eb4daf0310ba59729528fcc4dcd5d2 299 Gene3D G3DSA:1.10.10.10 9 93 1.7E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02566 c6eb4daf0310ba59729528fcc4dcd5d2 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 17 73 3.4E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02566 c6eb4daf0310ba59729528fcc4dcd5d2 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 50 4.3E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02566 c6eb4daf0310ba59729528fcc4dcd5d2 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 40 4.3E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02566 c6eb4daf0310ba59729528fcc4dcd5d2 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 61 4.3E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02566 c6eb4daf0310ba59729528fcc4dcd5d2 299 SUPERFAMILY SSF53850 97 293 1.71E-24 T 12-10-2018 AMJ96_CH02566 c6eb4daf0310ba59729528fcc4dcd5d2 299 Gene3D G3DSA:3.40.190.10 104 271 3.1E-49 T 12-10-2018 AMJ96_CH02566 c6eb4daf0310ba59729528fcc4dcd5d2 299 Gene3D G3DSA:3.40.190.10 172 265 3.1E-49 T 12-10-2018 AMJ96_CH02566 c6eb4daf0310ba59729528fcc4dcd5d2 299 SUPERFAMILY SSF46785 11 120 1.88E-25 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02819 4e094b84a3ca3aa3ebde591b4ed88871 710 SUPERFAMILY SSF51445 13 378 1.13E-89 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH02819 4e094b84a3ca3aa3ebde591b4ed88871 710 Gene3D G3DSA:2.60.40.1180 648 707 2.0E-14 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta AMJ96_CH02819 4e094b84a3ca3aa3ebde591b4ed88871 710 Pfam PF08532 Beta-galactosidase trimerisation domain 568 640 5.6E-6 T 12-10-2018 IPR013738 Beta-galactosidase trimerisation GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMJ96_CH02819 4e094b84a3ca3aa3ebde591b4ed88871 710 Pfam PF08532 Beta-galactosidase trimerisation domain 441 532 8.9E-18 T 12-10-2018 IPR013738 Beta-galactosidase trimerisation GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMJ96_CH02819 4e094b84a3ca3aa3ebde591b4ed88871 710 Pfam PF02449 Beta-galactosidase 24 396 1.2E-103 T 12-10-2018 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMJ96_CH02819 4e094b84a3ca3aa3ebde591b4ed88871 710 Gene3D G3DSA:3.40.50.880 416 644 7.7E-45 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH02819 4e094b84a3ca3aa3ebde591b4ed88871 710 PIRSF PIRSF001084 547 709 2.4E-17 T 12-10-2018 IPR003476 Glycoside hydrolase, family 42 GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMJ96_CH02819 4e094b84a3ca3aa3ebde591b4ed88871 710 PIRSF PIRSF001084 10 540 6.5E-135 T 12-10-2018 IPR003476 Glycoside hydrolase, family 42 GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMJ96_CH02819 4e094b84a3ca3aa3ebde591b4ed88871 710 SUPERFAMILY SSF52317 405 641 1.51E-32 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH02819 4e094b84a3ca3aa3ebde591b4ed88871 710 Pfam PF08533 Beta-galactosidase C-terminal domain 650 707 2.4E-7 T 12-10-2018 IPR013739 Beta-galactosidase C-terminal GO:0004565|GO:0006012 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMJ96_CH02819 4e094b84a3ca3aa3ebde591b4ed88871 710 Gene3D G3DSA:3.20.20.80 3 403 9.2E-115 T 12-10-2018 AMJ96_CH02403 9cc3213cf066780c14bdfebd67c44f48 106 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 40 50 - T 12-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMJ96_CH02403 9cc3213cf066780c14bdfebd67c44f48 106 Gene3D G3DSA:3.10.20.30 1 106 1.2E-37 T 12-10-2018 IPR012675 Beta-grasp domain superfamily AMJ96_CH02403 9cc3213cf066780c14bdfebd67c44f48 106 PRINTS PR00355 Adrenodoxin signature 59 73 9.3E-9 T 12-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMJ96_CH02403 9cc3213cf066780c14bdfebd67c44f48 106 PRINTS PR00355 Adrenodoxin signature 82 90 9.3E-9 T 12-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMJ96_CH02403 9cc3213cf066780c14bdfebd67c44f48 106 PRINTS PR00355 Adrenodoxin signature 40 50 9.3E-9 T 12-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AMJ96_CH02403 9cc3213cf066780c14bdfebd67c44f48 106 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 91 1.7E-15 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMJ96_CH02403 9cc3213cf066780c14bdfebd67c44f48 106 SUPERFAMILY SSF54292 3 104 2.5E-32 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMJ96_CH00467 a0244009a2ac57b9273c287769f45e0a 293 SUPERFAMILY SSF51430 16 284 2.62E-75 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH00467 a0244009a2ac57b9273c287769f45e0a 293 Gene3D G3DSA:3.20.20.100 15 291 3.8E-80 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH00467 a0244009a2ac57b9273c287769f45e0a 293 PRINTS PR00069 Aldo-keto reductase signature 219 243 3.2E-9 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH00467 a0244009a2ac57b9273c287769f45e0a 293 PRINTS PR00069 Aldo-keto reductase signature 148 165 3.2E-9 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH00467 a0244009a2ac57b9273c287769f45e0a 293 PRINTS PR00069 Aldo-keto reductase signature 117 135 3.2E-9 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH00467 a0244009a2ac57b9273c287769f45e0a 293 Pfam PF00248 Aldo/keto reductase family 22 284 2.4E-60 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_CH04046 dbdd66ae5f009447b6363fc16ce307c5 236 SUPERFAMILY SSF52540 18 232 3.06E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04046 dbdd66ae5f009447b6363fc16ce307c5 236 Pfam PF00005 ABC transporter 35 182 2.0E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH04046 dbdd66ae5f009447b6363fc16ce307c5 236 Gene3D G3DSA:3.40.50.300 17 235 1.1E-57 T 12-10-2018 AMJ96_CH04046 dbdd66ae5f009447b6363fc16ce307c5 236 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 18 230 3.1E-84 T 12-10-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 AMJ96_CH04046 dbdd66ae5f009447b6363fc16ce307c5 236 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH04046 dbdd66ae5f009447b6363fc16ce307c5 236 SMART SM00382 44 231 6.9E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03783 2db26c64b22758f56c1d1b36be0920db 298 SUPERFAMILY SSF53850 91 289 2.17E-24 T 12-10-2018 AMJ96_CH03783 2db26c64b22758f56c1d1b36be0920db 298 Gene3D G3DSA:1.10.10.10 5 93 7.6E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03783 2db26c64b22758f56c1d1b36be0920db 298 Gene3D G3DSA:3.40.190.10 165 263 2.5E-47 T 12-10-2018 AMJ96_CH03783 2db26c64b22758f56c1d1b36be0920db 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 7.3E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03783 2db26c64b22758f56c1d1b36be0920db 298 SUPERFAMILY SSF46785 4 114 3.99E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03783 2db26c64b22758f56c1d1b36be0920db 298 Gene3D G3DSA:3.40.190.10 98 270 2.5E-47 T 12-10-2018 AMJ96_CH03783 2db26c64b22758f56c1d1b36be0920db 298 Pfam PF03466 LysR substrate binding domain 91 281 1.1E-25 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PC00082 a922c1ff58f33d6a0cf2ac15354d9261 191 Gene3D G3DSA:2.60.120.10 10 114 3.9E-53 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PC00082 a922c1ff58f33d6a0cf2ac15354d9261 191 Gene3D G3DSA:2.60.120.10 5 186 3.9E-53 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PC00082 a922c1ff58f33d6a0cf2ac15354d9261 191 SUPERFAMILY SSF51182 1 189 1.68E-58 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_PC00082 a922c1ff58f33d6a0cf2ac15354d9261 191 Pfam PF05962 HutD 8 184 2.6E-57 T 12-10-2018 IPR010282 Uncharacterised protein family HutD/Ves AMJ96_CH03195 de71f01b57f46e002c8baf9bdf61fd28 294 Gene3D G3DSA:1.10.760.10 183 258 2.8E-31 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_CH03195 de71f01b57f46e002c8baf9bdf61fd28 294 Gene3D G3DSA:1.10.760.10 47 182 4.7E-54 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_CH03195 de71f01b57f46e002c8baf9bdf61fd28 294 SUPERFAMILY SSF46626 45 257 6.24E-68 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_CH03195 de71f01b57f46e002c8baf9bdf61fd28 294 Pfam PF02167 Cytochrome C1 family 55 291 1.1E-100 T 12-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMJ96_CH03195 de71f01b57f46e002c8baf9bdf61fd28 294 PRINTS PR00603 Cytochrome C1 signature 219 238 4.5E-58 T 12-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMJ96_CH03195 de71f01b57f46e002c8baf9bdf61fd28 294 PRINTS PR00603 Cytochrome C1 signature 151 175 4.5E-58 T 12-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMJ96_CH03195 de71f01b57f46e002c8baf9bdf61fd28 294 PRINTS PR00603 Cytochrome C1 signature 118 138 4.5E-58 T 12-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMJ96_CH03195 de71f01b57f46e002c8baf9bdf61fd28 294 PRINTS PR00603 Cytochrome C1 signature 258 273 4.5E-58 T 12-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMJ96_CH03195 de71f01b57f46e002c8baf9bdf61fd28 294 PRINTS PR00603 Cytochrome C1 signature 53 72 4.5E-58 T 12-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMJ96_CH03195 de71f01b57f46e002c8baf9bdf61fd28 294 PRINTS PR00603 Cytochrome C1 signature 207 218 4.5E-58 T 12-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMJ96_CH03195 de71f01b57f46e002c8baf9bdf61fd28 294 PRINTS PR00603 Cytochrome C1 signature 239 258 4.5E-58 T 12-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMJ96_CH03195 de71f01b57f46e002c8baf9bdf61fd28 294 PRINTS PR00603 Cytochrome C1 signature 73 92 4.5E-58 T 12-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AMJ96_CH03195 de71f01b57f46e002c8baf9bdf61fd28 294 Gene3D G3DSA:1.20.5.100 259 294 2.6E-5 T 12-10-2018 AMJ96_CH03030 fcc3f76214445f815aca59bbb626c31e 235 Pfam PF00226 DnaJ domain 169 230 5.5E-8 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH03030 fcc3f76214445f815aca59bbb626c31e 235 SMART SM00271 168 233 9.8E-10 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH03030 fcc3f76214445f815aca59bbb626c31e 235 Pfam PF05099 Tellurite resistance protein TerB 32 160 1.7E-32 T 12-10-2018 IPR007791 Co-chaperone DjlA, N-terminal AMJ96_CH03030 fcc3f76214445f815aca59bbb626c31e 235 Gene3D G3DSA:1.10.3680.10 16 153 2.3E-20 T 12-10-2018 IPR029024 TerB-like AMJ96_CH03030 fcc3f76214445f815aca59bbb626c31e 235 PRINTS PR00625 DnaJ domain signature 189 204 7.3E-5 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH03030 fcc3f76214445f815aca59bbb626c31e 235 PRINTS PR00625 DnaJ domain signature 171 189 7.3E-5 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH03030 fcc3f76214445f815aca59bbb626c31e 235 PRINTS PR00625 DnaJ domain signature 213 233 7.3E-5 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH03030 fcc3f76214445f815aca59bbb626c31e 235 SUPERFAMILY SSF46565 161 230 8.97E-15 T 12-10-2018 IPR036869 Chaperone J-domain superfamily AMJ96_CH03030 fcc3f76214445f815aca59bbb626c31e 235 Gene3D G3DSA:1.10.287.110 154 234 9.2E-12 T 12-10-2018 IPR036869 Chaperone J-domain superfamily AMJ96_CH03030 fcc3f76214445f815aca59bbb626c31e 235 SUPERFAMILY SSF158682 12 182 4.45E-32 T 12-10-2018 IPR029024 TerB-like AMJ96_CH03187 d4e4a4d6c79df17455e301c1b9cdbbd5 243 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 1 182 2.1E-55 T 12-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMJ96_CH03187 d4e4a4d6c79df17455e301c1b9cdbbd5 243 SUPERFAMILY SSF53178 1 183 5.62E-66 T 12-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 AMJ96_CH03187 d4e4a4d6c79df17455e301c1b9cdbbd5 243 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 107 117 - T 12-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 AMJ96_CH03187 d4e4a4d6c79df17455e301c1b9cdbbd5 243 Gene3D G3DSA:3.40.50.1470 1 186 6.3E-63 T 12-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 AMJ96_CH03187 d4e4a4d6c79df17455e301c1b9cdbbd5 243 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 1 177 34.59 T 12-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMJ96_CH03187 d4e4a4d6c79df17455e301c1b9cdbbd5 243 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 14 27 - T 12-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 AMJ96_CH03187 d4e4a4d6c79df17455e301c1b9cdbbd5 243 Pfam PF01195 Peptidyl-tRNA hydrolase 3 183 5.4E-52 T 12-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AMJ96_CH02933 804c0a618e684e0f90f8634ba4d32883 250 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 4 245 9.4E-78 T 12-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AMJ96_CH02933 804c0a618e684e0f90f8634ba4d32883 250 Gene3D G3DSA:3.20.20.70 1 249 2.9E-85 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH02933 804c0a618e684e0f90f8634ba4d32883 250 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 250 84.361 T 12-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AMJ96_CH02933 804c0a618e684e0f90f8634ba4d32883 250 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 4 242 1.4E-57 T 12-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AMJ96_CH02933 804c0a618e684e0f90f8634ba4d32883 250 SUPERFAMILY SSF63892 3 247 2.35E-76 T 12-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AMJ96_CH01618 f8202ae1f46da3dc86e10566da2db8ed 417 Gene3D G3DSA:3.30.70.270 204 379 1.3E-50 T 12-10-2018 AMJ96_CH01618 f8202ae1f46da3dc86e10566da2db8ed 417 SMART SM00267 205 376 2.7E-48 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01618 f8202ae1f46da3dc86e10566da2db8ed 417 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 213 374 4.7E-41 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01618 f8202ae1f46da3dc86e10566da2db8ed 417 Pfam PF00990 Diguanylate cyclase, GGDEF domain 217 371 1.9E-37 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01618 f8202ae1f46da3dc86e10566da2db8ed 417 SUPERFAMILY SSF55073 221 378 1.88E-42 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH04065 b9fad0147c1f74b04086f290892b52da 330 Pfam PF08406 CbbQ/NirQ/NorQ C-terminal 243 294 1.4E-4 T 12-10-2018 IPR013615 CbbQ/NirQ/NorQ, C-terminal AMJ96_CH04065 b9fad0147c1f74b04086f290892b52da 330 Pfam PF07728 AAA domain (dynein-related subfamily) 67 189 7.7E-10 T 12-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 AMJ96_CH04065 b9fad0147c1f74b04086f290892b52da 330 Gene3D G3DSA:3.40.50.300 50 230 1.3E-24 T 12-10-2018 AMJ96_CH04065 b9fad0147c1f74b04086f290892b52da 330 Pfam PF12556 Cobaltochelatase CobS subunit N terminal 8 40 3.6E-16 T 12-10-2018 IPR025865 Cobaltochelatase subunit CobS N-terminal domain KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 AMJ96_CH04065 b9fad0147c1f74b04086f290892b52da 330 TIGRFAM TIGR01650 PD_CobS: cobaltochelatase, CobS subunit 1 327 7.6E-197 T 12-10-2018 IPR006537 Cobaltochelatase subunit CobS KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 AMJ96_CH04065 b9fad0147c1f74b04086f290892b52da 330 SUPERFAMILY SSF52540 37 290 3.66E-31 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00204 0d70e23e8d861579b955f669f1523889 1157 Pfam PF13514 AAA domain 1 205 7.7E-67 T 12-10-2018 IPR038734 Uncharacterized protein YhaN, AAA domain AMJ96_PD00204 0d70e23e8d861579b955f669f1523889 1157 SUPERFAMILY SSF52540 1 1146 1.23E-11 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00204 0d70e23e8d861579b955f669f1523889 1157 Gene3D G3DSA:3.40.50.300 1 345 1.2E-15 T 12-10-2018 AMJ96_PD00204 0d70e23e8d861579b955f669f1523889 1157 Gene3D G3DSA:3.40.50.300 895 1151 1.3E-16 T 12-10-2018 AMJ96_CH02103 7b4200306fb2f95b81e418fa3696b6a9 399 Gene3D G3DSA:3.30.420.40 93 209 6.1E-39 T 12-10-2018 AMJ96_CH02103 7b4200306fb2f95b81e418fa3696b6a9 399 Pfam PF13412 Winged helix-turn-helix DNA-binding 12 56 2.9E-7 T 12-10-2018 AMJ96_CH02103 7b4200306fb2f95b81e418fa3696b6a9 399 SUPERFAMILY SSF46785 8 76 2.33E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02103 7b4200306fb2f95b81e418fa3696b6a9 399 Gene3D G3DSA:3.30.420.40 210 360 6.1E-39 T 12-10-2018 AMJ96_CH02103 7b4200306fb2f95b81e418fa3696b6a9 399 SUPERFAMILY SSF53067 86 386 8.84E-28 T 12-10-2018 AMJ96_CH02103 7b4200306fb2f95b81e418fa3696b6a9 399 Gene3D G3DSA:1.10.10.10 7 80 1.3E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02103 7b4200306fb2f95b81e418fa3696b6a9 399 Pfam PF00480 ROK family 120 383 7.3E-21 T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AMJ96_CH04315 a55491a688f7e01279e86b78c9a39b17 326 Gene3D G3DSA:3.40.190.10 109 304 1.7E-29 T 12-10-2018 AMJ96_CH04315 a55491a688f7e01279e86b78c9a39b17 326 SUPERFAMILY SSF53850 106 311 3.44E-23 T 12-10-2018 AMJ96_CH04315 a55491a688f7e01279e86b78c9a39b17 326 Gene3D G3DSA:1.10.10.10 13 77 3.7E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH04315 a55491a688f7e01279e86b78c9a39b17 326 SUPERFAMILY SSF46785 8 86 2.4E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH04315 a55491a688f7e01279e86b78c9a39b17 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 5.7E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH04315 a55491a688f7e01279e86b78c9a39b17 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 5.7E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH04315 a55491a688f7e01279e86b78c9a39b17 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 5.7E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH04315 a55491a688f7e01279e86b78c9a39b17 326 Gene3D G3DSA:3.40.190.10 168 277 1.7E-29 T 12-10-2018 AMJ96_CH04315 a55491a688f7e01279e86b78c9a39b17 326 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 70 1.2E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH04315 a55491a688f7e01279e86b78c9a39b17 326 Pfam PF03466 LysR substrate binding domain 109 307 4.0E-19 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PA00301 b00cc0d257cb7a2a0aa48026754d39b7 252 Pfam PF02358 Trehalose-phosphatase 24 239 1.4E-55 T 12-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 AMJ96_PA00301 b00cc0d257cb7a2a0aa48026754d39b7 252 Gene3D G3DSA:3.30.70.1020 104 176 1.8E-42 T 12-10-2018 AMJ96_PA00301 b00cc0d257cb7a2a0aa48026754d39b7 252 Gene3D G3DSA:3.40.50.1000 23 237 1.8E-42 T 12-10-2018 IPR023214 HAD superfamily AMJ96_PA00301 b00cc0d257cb7a2a0aa48026754d39b7 252 TIGRFAM TIGR00685 T6PP: trehalose-phosphatase 22 248 2.5E-39 T 12-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 AMJ96_PA00301 b00cc0d257cb7a2a0aa48026754d39b7 252 ProSitePatterns PS01228 Hypothetical cof family signature 1. 22 33 - T 12-10-2018 AMJ96_PA00301 b00cc0d257cb7a2a0aa48026754d39b7 252 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 23 220 6.9E-38 T 12-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AMJ96_PA00301 b00cc0d257cb7a2a0aa48026754d39b7 252 SUPERFAMILY SSF56784 22 251 1.6E-37 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_CH00995 5cf86f56b8162c9a940e790b49cb679f 102 SUPERFAMILY SSF54909 2 91 2.86E-23 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH00995 5cf86f56b8162c9a940e790b49cb679f 102 SMART SM00886 2 102 3.2E-30 T 12-10-2018 IPR013097 Stress responsive alpha-beta barrel AMJ96_CH00995 5cf86f56b8162c9a940e790b49cb679f 102 Pfam PF07876 Stress responsive A/B Barrel Domain 2 101 5.6E-23 T 12-10-2018 IPR013097 Stress responsive alpha-beta barrel AMJ96_CH00995 5cf86f56b8162c9a940e790b49cb679f 102 Gene3D G3DSA:3.30.70.100 1 102 4.1E-28 T 12-10-2018 AMJ96_PC00241 d54a71f169ccaead5fd3701e07bdb27f 140 ProSitePatterns PS00018 EF-hand calcium-binding domain. 98 110 - T 12-10-2018 IPR018247 EF-Hand 1, calcium-binding site AMJ96_PC00241 d54a71f169ccaead5fd3701e07bdb27f 140 ProSitePatterns PS00018 EF-hand calcium-binding domain. 122 134 - T 12-10-2018 IPR018247 EF-Hand 1, calcium-binding site AMJ96_PC00241 d54a71f169ccaead5fd3701e07bdb27f 140 Gene3D G3DSA:1.10.238.10 87 140 2.0E-12 T 12-10-2018 AMJ96_PC00241 d54a71f169ccaead5fd3701e07bdb27f 140 Pfam PF13202 EF hand 121 137 3.6E-4 T 12-10-2018 IPR002048 EF-hand domain GO:0005509 AMJ96_PC00241 d54a71f169ccaead5fd3701e07bdb27f 140 Pfam PF13202 EF hand 93 109 6.6E-4 T 12-10-2018 IPR002048 EF-hand domain GO:0005509 AMJ96_PC00241 d54a71f169ccaead5fd3701e07bdb27f 140 SUPERFAMILY SSF47473 80 139 1.39E-11 T 12-10-2018 IPR011992 EF-hand domain pair AMJ96_PB00429 e84fa5bb7a2f8073b63b3fdb83ead0ec 422 PIRSF PIRSF037420 26 383 5.3E-44 T 12-10-2018 IPR017200 Coenzyme PQQ synthesis protein E AMJ96_PB00429 e84fa5bb7a2f8073b63b3fdb83ead0ec 422 Pfam PF13353 4Fe-4S single cluster domain 42 145 4.7E-11 T 12-10-2018 AMJ96_PB00429 e84fa5bb7a2f8073b63b3fdb83ead0ec 422 SMART SM00729 39 242 0.0097 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMJ96_PB00429 e84fa5bb7a2f8073b63b3fdb83ead0ec 422 SUPERFAMILY SSF102114 39 349 2.09E-51 T 12-10-2018 AMJ96_PB00429 e84fa5bb7a2f8073b63b3fdb83ead0ec 422 Gene3D G3DSA:3.20.20.70 33 327 1.0E-43 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_PB00429 e84fa5bb7a2f8073b63b3fdb83ead0ec 422 Pfam PF13186 Iron-sulfur cluster-binding domain 274 339 1.5E-9 T 12-10-2018 IPR023885 4Fe4S-binding SPASM domain AMJ96_PB00429 e84fa5bb7a2f8073b63b3fdb83ead0ec 422 Pfam PF04055 Radical SAM superfamily 46 190 3.6E-15 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMJ96_PB00429 e84fa5bb7a2f8073b63b3fdb83ead0ec 422 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 274 367 1.5E-10 T 12-10-2018 IPR023885 4Fe4S-binding SPASM domain AMJ96_CH00300 729d5a4ba79489b205edde447eac83a8 244 Pfam PF00106 short chain dehydrogenase 7 196 8.6E-54 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00300 729d5a4ba79489b205edde447eac83a8 244 SUPERFAMILY SSF51735 1 228 1.7E-68 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00300 729d5a4ba79489b205edde447eac83a8 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 3.2E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00300 729d5a4ba79489b205edde447eac83a8 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 3.2E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00300 729d5a4ba79489b205edde447eac83a8 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 3.2E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00300 729d5a4ba79489b205edde447eac83a8 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH00300 729d5a4ba79489b205edde447eac83a8 244 Gene3D G3DSA:3.40.50.720 4 241 3.1E-72 T 12-10-2018 AMJ96_CH00300 729d5a4ba79489b205edde447eac83a8 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 3.7E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00300 729d5a4ba79489b205edde447eac83a8 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.7E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00300 729d5a4ba79489b205edde447eac83a8 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 3.7E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00300 729d5a4ba79489b205edde447eac83a8 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 3.7E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00300 729d5a4ba79489b205edde447eac83a8 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 3.7E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00300 729d5a4ba79489b205edde447eac83a8 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 3.7E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01554 df848b64b17d06ba2a943b7a5ee285bc 436 Pfam PF01872 RibD C-terminal domain 151 252 8.2E-20 T 12-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMJ96_CH01554 df848b64b17d06ba2a943b7a5ee285bc 436 Pfam PF01872 RibD C-terminal domain 350 413 1.3E-13 T 12-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMJ96_CH01554 df848b64b17d06ba2a943b7a5ee285bc 436 Gene3D G3DSA:3.40.430.10 283 434 3.4E-18 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMJ96_CH01554 df848b64b17d06ba2a943b7a5ee285bc 436 Gene3D G3DSA:3.40.430.10 140 279 2.8E-34 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMJ96_CH01554 df848b64b17d06ba2a943b7a5ee285bc 436 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 11 253 9.5E-81 T 12-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 AMJ96_CH01554 df848b64b17d06ba2a943b7a5ee285bc 436 SUPERFAMILY SSF53927 7 148 2.37E-41 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMJ96_CH01554 df848b64b17d06ba2a943b7a5ee285bc 436 Gene3D G3DSA:3.40.140.10 2 138 1.8E-40 T 12-10-2018 AMJ96_CH01554 df848b64b17d06ba2a943b7a5ee285bc 436 SUPERFAMILY SSF53597 149 256 5.15E-28 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMJ96_CH01554 df848b64b17d06ba2a943b7a5ee285bc 436 SUPERFAMILY SSF53597 325 429 2.27E-18 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMJ96_CH01554 df848b64b17d06ba2a943b7a5ee285bc 436 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 54 92 - T 12-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AMJ96_CH01554 df848b64b17d06ba2a943b7a5ee285bc 436 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 6 103 2.5E-15 T 12-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain AMJ96_CH00940 89259d3a29253c34ee8fcf6f1d9960cc 133 Gene3D G3DSA:3.10.129.10 1 131 7.2E-16 T 12-10-2018 AMJ96_CH00940 89259d3a29253c34ee8fcf6f1d9960cc 133 SUPERFAMILY SSF54637 8 129 6.91E-17 T 12-10-2018 IPR029069 HotDog domain superfamily AMJ96_PA00049 51dff598475753a49350c3f6b526d461 275 SUPERFAMILY SSF161098 2 275 2.09E-58 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00049 51dff598475753a49350c3f6b526d461 275 Gene3D G3DSA:1.10.3720.10 3 266 3.2E-54 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00049 51dff598475753a49350c3f6b526d461 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 268 1.7E-20 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02354 a2d01df458adc01aff6033dccdfccd96 257 Pfam PF00005 ABC transporter 31 179 1.2E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02354 a2d01df458adc01aff6033dccdfccd96 257 Gene3D G3DSA:3.40.50.300 13 256 4.9E-76 T 12-10-2018 AMJ96_CH02354 a2d01df458adc01aff6033dccdfccd96 257 SUPERFAMILY SSF52540 15 249 4.56E-79 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02354 a2d01df458adc01aff6033dccdfccd96 257 SMART SM00382 40 227 6.4E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02354 a2d01df458adc01aff6033dccdfccd96 257 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02354 a2d01df458adc01aff6033dccdfccd96 257 PIRSF PIRSF039085 12 255 6.9E-108 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMJ96_CH00247 c2b41f6d77f57e15c91d308f837bf025 362 Gene3D G3DSA:3.40.50.12780 7 346 1.9E-13 T 12-10-2018 AMJ96_CH00247 c2b41f6d77f57e15c91d308f837bf025 362 Pfam PF04443 Acyl-protein synthetase, LuxE 10 357 6.0E-50 T 12-10-2018 IPR007534 Acyl-protein synthetase, LuxE GO:0008218|GO:0047474 MetaCyc: PWY-7723 AMJ96_PC00090 3d06a54424aea1f153c8911c2811e597 251 SUPERFAMILY SSF64288 70 244 3.3E-38 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMJ96_PC00090 3d06a54424aea1f153c8911c2811e597 251 Gene3D G3DSA:3.40.1410.10 100 236 9.8E-32 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMJ96_PC00090 3d06a54424aea1f153c8911c2811e597 251 SMART SM00345 23 82 1.5E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00090 3d06a54424aea1f153c8911c2811e597 251 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 18 245 3.0E-94 T 12-10-2018 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 AMJ96_PC00090 3d06a54424aea1f153c8911c2811e597 251 Pfam PF07702 UTRA domain 104 240 3.2E-30 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMJ96_PC00090 3d06a54424aea1f153c8911c2811e597 251 Gene3D G3DSA:1.10.10.10 15 83 6.6E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00090 3d06a54424aea1f153c8911c2811e597 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 4.3E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00090 3d06a54424aea1f153c8911c2811e597 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 4.3E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00090 3d06a54424aea1f153c8911c2811e597 251 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 82 1.2E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00090 3d06a54424aea1f153c8911c2811e597 251 SMART SM00866 103 240 3.9E-29 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMJ96_PC00090 3d06a54424aea1f153c8911c2811e597 251 SUPERFAMILY SSF46785 15 106 9.79E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02161 d843151576a0b5b839111f8cd99eb048 469 SUPERFAMILY SSF55931 104 468 2.26E-137 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMJ96_CH02161 d843151576a0b5b839111f8cd99eb048 469 Pfam PF00120 Glutamine synthetase, catalytic domain 104 466 1.8E-141 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH02161 d843151576a0b5b839111f8cd99eb048 469 SUPERFAMILY SSF54368 3 101 4.05E-36 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH02161 d843151576a0b5b839111f8cd99eb048 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 51 69 - T 12-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMJ96_CH02161 d843151576a0b5b839111f8cd99eb048 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 12-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMJ96_CH02161 d843151576a0b5b839111f8cd99eb048 469 Gene3D G3DSA:3.10.20.70 3 105 6.1E-39 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH02161 d843151576a0b5b839111f8cd99eb048 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 15 96 7.7E-30 T 12-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMJ96_CH02161 d843151576a0b5b839111f8cd99eb048 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 12-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH02161 d843151576a0b5b839111f8cd99eb048 469 SMART SM01230 103 379 4.7E-149 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH02161 d843151576a0b5b839111f8cd99eb048 469 Gene3D G3DSA:3.30.590.10 106 457 4.2E-144 T 12-10-2018 AMJ96_CH02161 d843151576a0b5b839111f8cd99eb048 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 6 468 4.0E-204 T 12-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH02959 38414b994c5851597fc2c1b21604f15e 297 Gene3D G3DSA:1.10.20.140 117 188 2.2E-90 T 12-10-2018 AMJ96_CH02959 38414b994c5851597fc2c1b21604f15e 297 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 10 292 4.1E-80 T 12-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AMJ96_CH02959 38414b994c5851597fc2c1b21604f15e 297 SUPERFAMILY SSF52540 11 159 5.58E-27 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02959 38414b994c5851597fc2c1b21604f15e 297 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 10 297 27.457 T 12-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AMJ96_CH02959 38414b994c5851597fc2c1b21604f15e 297 SUPERFAMILY SSF52540 11 238 4.18E-6 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02959 38414b994c5851597fc2c1b21604f15e 297 Gene3D G3DSA:3.40.50.300 14 292 2.2E-90 T 12-10-2018 AMJ96_CH02959 38414b994c5851597fc2c1b21604f15e 297 Pfam PF01715 IPP transferase 43 288 4.2E-72 T 12-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AMJ96_CH00142 d969e962858d9a9ebf735ced5cf008f5 179 Gene3D G3DSA:2.30.30.40 41 103 1.7E-11 T 12-10-2018 AMJ96_CH00142 d969e962858d9a9ebf735ced5cf008f5 179 Gene3D G3DSA:2.30.30.40 117 169 5.6E-8 T 12-10-2018 AMJ96_CH00142 d969e962858d9a9ebf735ced5cf008f5 179 SMART SM00287 40 103 9.4E-4 T 12-10-2018 IPR003646 SH3-like domain, bacterial-type AMJ96_CH00142 d969e962858d9a9ebf735ced5cf008f5 179 SMART SM00287 115 173 1.1 T 12-10-2018 IPR003646 SH3-like domain, bacterial-type AMJ96_CH00142 d969e962858d9a9ebf735ced5cf008f5 179 Pfam PF06347 Bacterial SH3 domain 46 102 7.2E-23 T 12-10-2018 IPR010466 Protein of unknown function DUF1058 AMJ96_CH00142 d969e962858d9a9ebf735ced5cf008f5 179 Pfam PF06347 Bacterial SH3 domain 117 171 6.3E-20 T 12-10-2018 IPR010466 Protein of unknown function DUF1058 AMJ96_CH01011 81dd3a448022b72f51cfd104b5b868d6 116 Gene3D G3DSA:3.30.70.100 1 93 2.0E-21 T 12-10-2018 AMJ96_CH01011 81dd3a448022b72f51cfd104b5b868d6 116 SUPERFAMILY SSF54909 1 99 8.5E-25 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH01011 81dd3a448022b72f51cfd104b5b868d6 116 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 76 2.7E-11 T 12-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AMJ96_PB00013 258a591a93982fe7061c8b3eee60d48c 293 Pfam PF14015 Protein of unknown function (DUF4231) 36 109 2.8E-9 T 12-10-2018 IPR025325 Protein of unknown function DUF4231 AMJ96_CH01667 bb5bd0ce5d0ca93ecf8d35bd76a073fd 55 SUPERFAMILY SSF57829 1 53 4.64E-17 T 12-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 AMJ96_CH01667 bb5bd0ce5d0ca93ecf8d35bd76a073fd 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 1.1E-17 T 12-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01667 bb5bd0ce5d0ca93ecf8d35bd76a073fd 55 Gene3D G3DSA:2.20.28.120 1 55 5.5E-24 T 12-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01667 bb5bd0ce5d0ca93ecf8d35bd76a073fd 55 Pfam PF00471 Ribosomal protein L33 7 53 1.8E-13 T 12-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01667 bb5bd0ce5d0ca93ecf8d35bd76a073fd 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 12-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01667 bb5bd0ce5d0ca93ecf8d35bd76a073fd 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 2 53 11.916 T 12-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH00863 176e4db053114c9c3463e090059aabe4 448 Gene3D G3DSA:3.30.2290.10 3 225 3.8E-63 T 12-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal AMJ96_CH00863 176e4db053114c9c3463e090059aabe4 448 SUPERFAMILY SSF111283 10 447 9.55E-120 T 12-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 AMJ96_CH00863 176e4db053114c9c3463e090059aabe4 448 Pfam PF01523 Putative modulator of DNA gyrase 29 317 1.6E-56 T 12-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 AMJ96_CH01731 ebd33efdb2d2a5497d43581cca0ccf1d 120 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 3 120 4.0E-44 T 12-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01731 ebd33efdb2d2a5497d43581cca0ccf1d 120 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 3 120 28.212 T 12-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01731 ebd33efdb2d2a5497d43581cca0ccf1d 120 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 4 120 6.2E-41 T 12-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01731 ebd33efdb2d2a5497d43581cca0ccf1d 120 SUPERFAMILY SSF53137 4 118 3.49E-52 T 12-10-2018 AMJ96_CH01731 ebd33efdb2d2a5497d43581cca0ccf1d 120 Gene3D G3DSA:3.30.420.100 2 120 1.6E-43 T 12-10-2018 AMJ96_PA00059 585bc6de1b4885d8ef6136ef19358875 641 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 104 505 3.8E-64 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_PA00059 585bc6de1b4885d8ef6136ef19358875 641 Gene3D G3DSA:3.40.190.10 66 343 3.4E-42 T 12-10-2018 AMJ96_PA00059 585bc6de1b4885d8ef6136ef19358875 641 SUPERFAMILY SSF53850 72 623 4.71E-81 T 12-10-2018 AMJ96_PA00059 585bc6de1b4885d8ef6136ef19358875 641 Gene3D G3DSA:3.10.105.10 353 600 1.6E-40 T 12-10-2018 AMJ96_CH00510 6eacc1768a5d2f23ac54348540d3ca01 517 Gene3D G3DSA:3.40.50.300 280 515 5.4E-35 T 12-10-2018 AMJ96_CH00510 6eacc1768a5d2f23ac54348540d3ca01 517 SUPERFAMILY SSF52540 262 504 2.09E-38 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00510 6eacc1768a5d2f23ac54348540d3ca01 517 Gene3D G3DSA:3.40.50.300 10 264 2.7E-56 T 12-10-2018 AMJ96_CH00510 6eacc1768a5d2f23ac54348540d3ca01 517 SUPERFAMILY SSF52540 28 245 4.61E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00510 6eacc1768a5d2f23ac54348540d3ca01 517 ProSitePatterns PS00211 ABC transporters family signature. 419 433 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00510 6eacc1768a5d2f23ac54348540d3ca01 517 Pfam PF00005 ABC transporter 293 446 2.0E-15 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00510 6eacc1768a5d2f23ac54348540d3ca01 517 Pfam PF00005 ABC transporter 45 194 2.0E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00510 6eacc1768a5d2f23ac54348540d3ca01 517 SMART SM00382 54 242 1.0E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00510 6eacc1768a5d2f23ac54348540d3ca01 517 SMART SM00382 301 494 0.46 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00081 ebc36e08fbf612b44f39c9537526f533 620 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 109 5.2E-40 T 12-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_PA00081 ebc36e08fbf612b44f39c9537526f533 620 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 327 1.5E-73 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMJ96_PA00081 ebc36e08fbf612b44f39c9537526f533 620 SUPERFAMILY SSF56059 82 349 9.55E-67 T 12-10-2018 AMJ96_PA00081 ebc36e08fbf612b44f39c9537526f533 620 Gene3D G3DSA:2.40.50.100 550 615 4.6E-20 T 12-10-2018 AMJ96_PA00081 ebc36e08fbf612b44f39c9537526f533 620 Gene3D G3DSA:3.30.470.130 1 451 3.5E-184 T 12-10-2018 AMJ96_PA00081 ebc36e08fbf612b44f39c9537526f533 620 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 572 589 - T 12-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_PA00081 ebc36e08fbf612b44f39c9537526f533 620 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 290 297 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMJ96_PA00081 ebc36e08fbf612b44f39c9537526f533 620 SMART SM00878 340 444 5.5E-50 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_PA00081 ebc36e08fbf612b44f39c9537526f533 620 SUPERFAMILY SSF51230 542 614 1.31E-18 T 12-10-2018 IPR011053 Single hybrid motif AMJ96_PA00081 ebc36e08fbf612b44f39c9537526f533 620 Pfam PF02785 Biotin carboxylase C-terminal domain 340 445 1.1E-30 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_PA00081 ebc36e08fbf612b44f39c9537526f533 620 Pfam PF00364 Biotin-requiring enzyme 550 613 6.3E-14 T 12-10-2018 IPR000089 Biotin/lipoyl attachment AMJ96_PA00081 ebc36e08fbf612b44f39c9537526f533 620 SUPERFAMILY SSF52440 2 112 4.6E-41 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMJ96_PA00081 ebc36e08fbf612b44f39c9537526f533 620 SUPERFAMILY SSF51246 335 449 2.77E-33 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMJ96_CH01626 c91476fa2917db86ea2299bed2d9ed87 328 SUPERFAMILY SSF51430 1 322 1.83E-70 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH01626 c91476fa2917db86ea2299bed2d9ed87 328 Gene3D G3DSA:3.20.20.100 3 327 2.2E-75 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH01626 c91476fa2917db86ea2299bed2d9ed87 328 Pfam PF00248 Aldo/keto reductase family 15 316 1.8E-60 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_CH01626 c91476fa2917db86ea2299bed2d9ed87 328 PRINTS PR00069 Aldo-keto reductase signature 106 124 8.7E-6 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH01626 c91476fa2917db86ea2299bed2d9ed87 328 PRINTS PR00069 Aldo-keto reductase signature 42 66 8.7E-6 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH01626 c91476fa2917db86ea2299bed2d9ed87 328 PRINTS PR00069 Aldo-keto reductase signature 138 155 8.7E-6 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH03578 6a990bc7229a248bb7250b05e43f0577 370 Gene3D G3DSA:1.10.540.10 22 128 4.6E-16 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMJ96_CH03578 6a990bc7229a248bb7250b05e43f0577 370 PIRSF PIRSF016578 10 355 3.4E-24 T 12-10-2018 AMJ96_CH03578 6a990bc7229a248bb7250b05e43f0577 370 SUPERFAMILY SSF56645 28 220 4.93E-24 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMJ96_CH03578 6a990bc7229a248bb7250b05e43f0577 370 Gene3D G3DSA:1.20.140.10 228 369 1.4E-19 T 12-10-2018 AMJ96_CH03578 6a990bc7229a248bb7250b05e43f0577 370 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 240 351 4.6E-5 T 12-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_CH03578 6a990bc7229a248bb7250b05e43f0577 370 SUPERFAMILY SSF47203 233 357 5.14E-10 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMJ96_CH03578 6a990bc7229a248bb7250b05e43f0577 370 Gene3D G3DSA:2.40.110.10 131 220 1.0E-10 T 12-10-2018 AMJ96_CH01499 27b76c03dc8d38e6e0ed3049b5578d11 220 ProSitePatterns PS00856 Guanylate kinase-like signature. 49 66 - T 12-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 AMJ96_CH01499 27b76c03dc8d38e6e0ed3049b5578d11 220 SUPERFAMILY SSF52540 13 199 1.15E-66 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01499 27b76c03dc8d38e6e0ed3049b5578d11 220 Hamap MF_00328 Guanylate kinase [gmk]. 13 197 36.791 T 12-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 AMJ96_CH01499 27b76c03dc8d38e6e0ed3049b5578d11 220 Pfam PF00625 Guanylate kinase 17 195 8.4E-51 T 12-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AMJ96_CH01499 27b76c03dc8d38e6e0ed3049b5578d11 220 Gene3D G3DSA:3.30.63.10 46 105 1.7E-65 T 12-10-2018 AMJ96_CH01499 27b76c03dc8d38e6e0ed3049b5578d11 220 Gene3D G3DSA:3.40.50.300 19 193 1.7E-65 T 12-10-2018 AMJ96_CH01499 27b76c03dc8d38e6e0ed3049b5578d11 220 SMART SM00072 14 197 5.8E-67 T 12-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AMJ96_CH01499 27b76c03dc8d38e6e0ed3049b5578d11 220 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 16 194 8.0E-73 T 12-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 AMJ96_CH00276 b3dd6be753357c0f952370dfb664e3ac 807 SMART SM00873 214 386 7.0E-83 T 12-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AMJ96_CH00276 b3dd6be753357c0f952370dfb664e3ac 807 Gene3D G3DSA:3.30.930.10 490 698 1.6E-44 T 12-10-2018 AMJ96_CH00276 b3dd6be753357c0f952370dfb664e3ac 807 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 800 41.499 T 12-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMJ96_CH00276 b3dd6be753357c0f952370dfb664e3ac 807 SUPERFAMILY SSF50249 38 194 4.28E-44 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH00276 b3dd6be753357c0f952370dfb664e3ac 807 SUPERFAMILY SSF54991 710 806 6.67E-24 T 12-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 AMJ96_CH00276 b3dd6be753357c0f952370dfb664e3ac 807 Gene3D G3DSA:2.40.50.140 38 154 1.2E-63 T 12-10-2018 AMJ96_CH00276 b3dd6be753357c0f952370dfb664e3ac 807 Gene3D G3DSA:3.30.70.380 714 807 2.2E-21 T 12-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 AMJ96_CH00276 b3dd6be753357c0f952370dfb664e3ac 807 Pfam PF01588 Putative tRNA binding domain 44 145 2.3E-22 T 12-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 AMJ96_CH00276 b3dd6be753357c0f952370dfb664e3ac 807 SMART SM00874 402 470 3.0E-25 T 12-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AMJ96_CH00276 b3dd6be753357c0f952370dfb664e3ac 807 SUPERFAMILY SSF55681 466 697 8.45E-40 T 12-10-2018 AMJ96_CH00276 b3dd6be753357c0f952370dfb664e3ac 807 SUPERFAMILY SSF46955 402 474 5.86E-18 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily AMJ96_CH00276 b3dd6be753357c0f952370dfb664e3ac 807 Pfam PF03484 tRNA synthetase B5 domain 405 469 2.8E-17 T 12-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AMJ96_CH00276 b3dd6be753357c0f952370dfb664e3ac 807 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 806 8.0E-214 T 12-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AMJ96_CH00276 b3dd6be753357c0f952370dfb664e3ac 807 Pfam PF03483 B3/4 domain 215 386 6.0E-63 T 12-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AMJ96_CH00276 b3dd6be753357c0f952370dfb664e3ac 807 SMART SM00896 713 806 1.1E-32 T 12-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 AMJ96_CH00276 b3dd6be753357c0f952370dfb664e3ac 807 Gene3D G3DSA:3.30.56.10 402 474 1.5E-21 T 12-10-2018 AMJ96_CH00276 b3dd6be753357c0f952370dfb664e3ac 807 Gene3D G3DSA:3.30.56.10 5 181 1.2E-63 T 12-10-2018 AMJ96_CH00276 b3dd6be753357c0f952370dfb664e3ac 807 Gene3D G3DSA:3.50.40.10 195 398 1.1E-71 T 12-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 AMJ96_CH00276 b3dd6be753357c0f952370dfb664e3ac 807 Pfam PF03147 Ferredoxin-fold anticodon binding domain 713 806 2.6E-21 T 12-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 AMJ96_CH00276 b3dd6be753357c0f952370dfb664e3ac 807 SUPERFAMILY SSF56037 201 396 1.99E-71 T 12-10-2018 AMJ96_PB00368 c463b612e520816bb0d8f547631a7994 221 SUPERFAMILY SSF51206 7 140 1.57E-25 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like AMJ96_PB00368 c463b612e520816bb0d8f547631a7994 221 Pfam PF13545 Crp-like helix-turn-helix domain 151 218 4.4E-8 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_PB00368 c463b612e520816bb0d8f547631a7994 221 SMART SM00419 166 212 0.0014 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_PB00368 c463b612e520816bb0d8f547631a7994 221 Gene3D G3DSA:2.60.120.10 6 140 4.1E-23 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PB00368 c463b612e520816bb0d8f547631a7994 221 SMART SM00100 13 134 1.7E-11 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_PB00368 c463b612e520816bb0d8f547631a7994 221 Pfam PF00027 Cyclic nucleotide-binding domain 33 118 2.6E-12 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_PB00368 c463b612e520816bb0d8f547631a7994 221 Gene3D G3DSA:1.10.10.10 141 221 3.2E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00626 9a938e86188f83b4900c13b08da9cc15 165 Gene3D G3DSA:3.10.450.50 48 165 4.2E-39 T 12-10-2018 AMJ96_PD00626 9a938e86188f83b4900c13b08da9cc15 165 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 54 158 1.8E-9 T 12-10-2018 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 AMJ96_PD00626 9a938e86188f83b4900c13b08da9cc15 165 Pfam PF14534 Domain of unknown function (DUF4440) 56 155 1.9E-13 T 12-10-2018 IPR027843 Domain of unknown function DUF4440 AMJ96_PD00626 9a938e86188f83b4900c13b08da9cc15 165 SUPERFAMILY SSF54427 48 163 2.24E-27 T 12-10-2018 IPR032710 NTF2-like domain superfamily AMJ96_PA00293 bd5ec0fec3f59d417c988fbb656a23e9 326 SUPERFAMILY SSF53613 16 319 1.56E-62 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_PA00293 bd5ec0fec3f59d417c988fbb656a23e9 326 Gene3D G3DSA:3.40.1190.20 15 321 1.2E-66 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_PA00293 bd5ec0fec3f59d417c988fbb656a23e9 326 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 264 277 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMJ96_PA00293 bd5ec0fec3f59d417c988fbb656a23e9 326 Pfam PF00294 pfkB family carbohydrate kinase 44 310 1.8E-35 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB AMJ96_PD00226 cdd060eb98cb894c71117d08f9b7cf76 295 SUPERFAMILY SSF161098 26 295 1.2E-56 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00226 cdd060eb98cb894c71117d08f9b7cf76 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 287 2.3E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00226 cdd060eb98cb894c71117d08f9b7cf76 295 Gene3D G3DSA:1.10.3720.10 16 287 8.2E-51 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00003 bc04187a4f2260fc28262c4bc18142ef 330 SUPERFAMILY SSF51679 5 323 1.05E-60 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_PA00003 bc04187a4f2260fc28262c4bc18142ef 330 Pfam PF00296 Luciferase-like monooxygenase 17 295 2.1E-27 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMJ96_PA00003 bc04187a4f2260fc28262c4bc18142ef 330 Gene3D G3DSA:3.20.20.30 2 326 9.0E-77 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_PA00003 bc04187a4f2260fc28262c4bc18142ef 330 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 5 323 1.2E-100 T 12-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 AMJ96_PD00440 59af8a285b6e6d9628d6abf899025888 374 Pfam PF01546 Peptidase family M20/M25/M40 65 369 2.0E-34 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 AMJ96_PD00440 59af8a285b6e6d9628d6abf899025888 374 SUPERFAMILY SSF53187 3 371 6.0E-56 T 12-10-2018 AMJ96_PD00440 59af8a285b6e6d9628d6abf899025888 374 Gene3D G3DSA:3.40.630.10 10 358 1.1E-92 T 12-10-2018 AMJ96_PD00440 59af8a285b6e6d9628d6abf899025888 374 Pfam PF07687 Peptidase dimerisation domain 170 277 3.4E-22 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain AMJ96_PD00440 59af8a285b6e6d9628d6abf899025888 374 Gene3D G3DSA:3.30.70.360 173 289 1.1E-92 T 12-10-2018 AMJ96_PD00440 59af8a285b6e6d9628d6abf899025888 374 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 5 368 5.4E-147 T 12-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 AMJ96_PD00440 59af8a285b6e6d9628d6abf899025888 374 SUPERFAMILY SSF55031 173 277 4.19E-20 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMJ96_CH02676 ba532b6cb161bf444dceec1c9f59ad2d 1176 Gene3D G3DSA:2.160.20.160 146 335 1.1E-5 T 12-10-2018 AMJ96_CH02676 ba532b6cb161bf444dceec1c9f59ad2d 1176 PRINTS PR00313 NodO calcium binding signature 38 49 5.4E-8 T 12-10-2018 AMJ96_CH02676 ba532b6cb161bf444dceec1c9f59ad2d 1176 PRINTS PR00313 NodO calcium binding signature 131 139 5.4E-8 T 12-10-2018 AMJ96_CH02676 ba532b6cb161bf444dceec1c9f59ad2d 1176 PRINTS PR00313 NodO calcium binding signature 223 231 5.4E-8 T 12-10-2018 AMJ96_CH02676 ba532b6cb161bf444dceec1c9f59ad2d 1176 PRINTS PR00313 NodO calcium binding signature 315 324 5.4E-8 T 12-10-2018 AMJ96_CH02676 ba532b6cb161bf444dceec1c9f59ad2d 1176 SUPERFAMILY SSF51120 217 328 8.72E-5 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH02245 7d118b9a837de01203a0be586542891d 256 Pfam PF00121 Triosephosphate isomerase 8 247 5.6E-77 T 12-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH02245 7d118b9a837de01203a0be586542891d 256 SUPERFAMILY SSF51351 5 250 1.7E-82 T 12-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH02245 7d118b9a837de01203a0be586542891d 256 Gene3D G3DSA:3.20.20.70 1 254 4.4E-95 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH02245 7d118b9a837de01203a0be586542891d 256 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 5 250 55.879 T 12-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH02245 7d118b9a837de01203a0be586542891d 256 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 8 241 5.4E-49 T 12-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH02245 7d118b9a837de01203a0be586542891d 256 ProSitePatterns PS00171 Triosephosphate isomerase active site. 167 177 - T 12-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH04060 47283dd666cc3d1c7fa97936f47f1484 98 SUPERFAMILY SSF143800 1 84 3.14E-29 T 12-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04060 47283dd666cc3d1c7fa97936f47f1484 98 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 68 20.021 T 12-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH04060 47283dd666cc3d1c7fa97936f47f1484 98 Pfam PF00830 Ribosomal L28 family 3 61 5.5E-24 T 12-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04060 47283dd666cc3d1c7fa97936f47f1484 98 Gene3D G3DSA:2.30.170.40 2 78 2.1E-26 T 12-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04060 47283dd666cc3d1c7fa97936f47f1484 98 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 1.6E-24 T 12-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH03861 04d581deedf527273a0457265487b246 382 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 143 371 1.5E-68 T 12-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMJ96_CH03861 04d581deedf527273a0457265487b246 382 SMART SM01002 148 314 1.4E-79 T 12-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AMJ96_CH03861 04d581deedf527273a0457265487b246 382 SUPERFAMILY SSF52283 5 170 2.04E-46 T 12-10-2018 AMJ96_CH03861 04d581deedf527273a0457265487b246 382 Gene3D G3DSA:3.40.50.720 139 321 4.5E-130 T 12-10-2018 AMJ96_CH03861 04d581deedf527273a0457265487b246 382 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 7 139 3.3E-39 T 12-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMJ96_CH03861 04d581deedf527273a0457265487b246 382 SMART SM01003 6 139 6.0E-56 T 12-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AMJ96_CH03861 04d581deedf527273a0457265487b246 382 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 172 197 - T 12-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 AMJ96_CH03861 04d581deedf527273a0457265487b246 382 SUPERFAMILY SSF51735 139 320 2.15E-37 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03861 04d581deedf527273a0457265487b246 382 Gene3D G3DSA:3.40.50.720 7 367 4.5E-130 T 12-10-2018 AMJ96_CH03009 2f396885631314720bd20db938886ad6 443 SMART SM00842 25 221 6.8E-77 T 12-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 AMJ96_CH03009 2f396885631314720bd20db938886ad6 443 Pfam PF14450 Cell division protein FtsA 27 220 7.9E-9 T 12-10-2018 AMJ96_CH03009 2f396885631314720bd20db938886ad6 443 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 25 405 3.6E-104 T 12-10-2018 IPR020823 Cell division protein FtsA AMJ96_CH03009 2f396885631314720bd20db938886ad6 443 Gene3D G3DSA:3.90.640.10 260 328 7.1E-94 T 12-10-2018 AMJ96_CH03009 2f396885631314720bd20db938886ad6 443 SUPERFAMILY SSF53067 27 222 1.5E-45 T 12-10-2018 AMJ96_CH03009 2f396885631314720bd20db938886ad6 443 Gene3D G3DSA:3.30.1490.110 110 194 7.1E-94 T 12-10-2018 AMJ96_CH03009 2f396885631314720bd20db938886ad6 443 Gene3D G3DSA:3.30.420.40 28 400 7.1E-94 T 12-10-2018 AMJ96_CH03009 2f396885631314720bd20db938886ad6 443 Gene3D G3DSA:3.30.420.40 222 380 7.1E-94 T 12-10-2018 AMJ96_CH03009 2f396885631314720bd20db938886ad6 443 PIRSF PIRSF003101 17 443 7.1E-121 T 12-10-2018 IPR020823 Cell division protein FtsA AMJ96_CH03009 2f396885631314720bd20db938886ad6 443 Pfam PF14450 Cell division protein FtsA 232 402 2.4E-23 T 12-10-2018 AMJ96_CH03009 2f396885631314720bd20db938886ad6 443 Hamap MF_02033 Cell division protein FtsA [ftsA]. 21 443 25.971 T 12-10-2018 IPR020823 Cell division protein FtsA AMJ96_CH03009 2f396885631314720bd20db938886ad6 443 Pfam PF02491 SHS2 domain inserted in FTSA 118 187 1.5E-18 T 12-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 AMJ96_CH03009 2f396885631314720bd20db938886ad6 443 SUPERFAMILY SSF53067 224 406 1.23E-40 T 12-10-2018 AMJ96_CH00022 6f6392921510e77e6fe4ab4ea3ac3c1b 279 Gene3D G3DSA:3.20.20.70 1 271 1.2E-95 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH00022 6f6392921510e77e6fe4ab4ea3ac3c1b 279 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 9 259 5.8E-75 T 12-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMJ96_CH00022 6f6392921510e77e6fe4ab4ea3ac3c1b 279 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 15 269 35.116 T 12-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMJ96_CH00022 6f6392921510e77e6fe4ab4ea3ac3c1b 279 SUPERFAMILY SSF51366 4 257 1.98E-88 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMJ96_CH00022 6f6392921510e77e6fe4ab4ea3ac3c1b 279 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 49 62 - T 12-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMJ96_CH00022 6f6392921510e77e6fe4ab4ea3ac3c1b 279 Pfam PF00290 Tryptophan synthase alpha chain 9 257 9.5E-89 T 12-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMJ96_PC00459 ce71c73fa95119670265a6dec1ef8a19 410 SUPERFAMILY SSF53335 216 407 1.82E-26 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_PC00459 ce71c73fa95119670265a6dec1ef8a19 410 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 15 202 1.4E-48 T 12-10-2018 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 AMJ96_PC00459 ce71c73fa95119670265a6dec1ef8a19 410 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 13 191 1.3E-19 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMJ96_PC00459 ce71c73fa95119670265a6dec1ef8a19 410 SUPERFAMILY SSF53790 12 213 1.23E-40 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMJ96_PC00459 ce71c73fa95119670265a6dec1ef8a19 410 Gene3D G3DSA:3.40.50.150 235 410 1.3E-65 T 12-10-2018 AMJ96_PC00459 ce71c73fa95119670265a6dec1ef8a19 410 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 240 361 5.0E-33 T 12-10-2018 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00860+2.1.1.196|MetaCyc: PWY-7377 AMJ96_PC00459 ce71c73fa95119670265a6dec1ef8a19 410 Gene3D G3DSA:3.40.1010.10 12 113 4.2E-14 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMJ96_PC00459 ce71c73fa95119670265a6dec1ef8a19 410 PIRSF PIRSF036428 9 410 1.1E-136 T 12-10-2018 IPR006365 Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase GO:0008276|GO:0009236 KEGG: 00860+2.1.1.132 AMJ96_PC00333 ba946309a72328defaf75bb4f23c961a 172 SMART SM00028 52 85 32.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_PC00333 ba946309a72328defaf75bb4f23c961a 172 SMART SM00028 120 153 3.9E-4 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_PC00333 ba946309a72328defaf75bb4f23c961a 172 Gene3D G3DSA:1.25.40.10 8 170 1.9E-15 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_PC00333 ba946309a72328defaf75bb4f23c961a 172 Pfam PF13432 Tetratricopeptide repeat 59 98 0.0091 T 12-10-2018 AMJ96_PC00333 ba946309a72328defaf75bb4f23c961a 172 Pfam PF07719 Tetratricopeptide repeat 122 153 2.4E-6 T 12-10-2018 IPR013105 Tetratricopeptide repeat 2 AMJ96_PC00333 ba946309a72328defaf75bb4f23c961a 172 SUPERFAMILY SSF48452 54 163 1.76E-17 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03076 37bef42612587320045c660875301e90 164 SUPERFAMILY SSF143744 13 151 5.89E-26 T 12-10-2018 IPR038084 GlcG-like domain superfamily AMJ96_CH03076 37bef42612587320045c660875301e90 164 Gene3D G3DSA:3.30.450.150 1 159 4.4E-51 T 12-10-2018 IPR038084 GlcG-like domain superfamily AMJ96_CH03076 37bef42612587320045c660875301e90 164 Pfam PF03928 Haem-degrading 22 148 5.8E-31 T 12-10-2018 IPR005624 Haem-degrading AMJ96_CH03076 37bef42612587320045c660875301e90 164 Hamap MF_00761 UPF0303 protein . 4 154 32.769 T 12-10-2018 IPR010371 Uncharacterised protein family UPF0303 AMJ96_CH03076 37bef42612587320045c660875301e90 164 PIRSF PIRSF008757 1 162 3.6E-58 T 12-10-2018 IPR010371 Uncharacterised protein family UPF0303 AMJ96_PC00044 41f585714f43e51da14ac3782972931a 453 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 227 400 2.7E-11 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_PC00044 41f585714f43e51da14ac3782972931a 453 SUPERFAMILY SSF55073 217 405 1.05E-34 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_PC00044 41f585714f43e51da14ac3782972931a 453 Gene3D G3DSA:3.30.70.1230 214 420 1.2E-33 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH01567 06ca2781e333195efc04152002b0e74a 112 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 51 70 - T 12-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AMJ96_CH01567 06ca2781e333195efc04152002b0e74a 112 PRINTS PR01727 Prokaryotic integration host factor signature 45 60 7.3E-12 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMJ96_CH01567 06ca2781e333195efc04152002b0e74a 112 PRINTS PR01727 Prokaryotic integration host factor signature 63 76 7.3E-12 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMJ96_CH01567 06ca2781e333195efc04152002b0e74a 112 PRINTS PR01727 Prokaryotic integration host factor signature 79 93 7.3E-12 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMJ96_CH01567 06ca2781e333195efc04152002b0e74a 112 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 5 96 3.3E-41 T 12-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 AMJ96_CH01567 06ca2781e333195efc04152002b0e74a 112 Pfam PF00216 Bacterial DNA-binding protein 6 94 8.7E-26 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMJ96_CH01567 06ca2781e333195efc04152002b0e74a 112 Gene3D G3DSA:4.10.520.10 4 102 1.0E-29 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMJ96_CH01567 06ca2781e333195efc04152002b0e74a 112 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 4 100 28.153 T 12-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 AMJ96_CH01567 06ca2781e333195efc04152002b0e74a 112 SMART SM00411 6 95 6.4E-27 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMJ96_CH01567 06ca2781e333195efc04152002b0e74a 112 SUPERFAMILY SSF47729 6 94 1.91E-26 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMJ96_CH03814 e5303bdd9079a5f4702c1240c11ae863 334 Gene3D G3DSA:1.20.1530.20 1 317 1.4E-30 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily AMJ96_CH03814 e5303bdd9079a5f4702c1240c11ae863 334 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 7 315 5.1E-101 T 12-10-2018 IPR016833 Putative sodium bile acid cotransporter AMJ96_CH03814 e5303bdd9079a5f4702c1240c11ae863 334 PIRSF PIRSF026166 1 333 9.5E-138 T 12-10-2018 IPR016833 Putative sodium bile acid cotransporter AMJ96_CH00911 7fb04fc0bafaa78302d37314d1800e42 704 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 1 702 24.059 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMJ96_CH00911 7fb04fc0bafaa78302d37314d1800e42 704 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 3 702 9.5E-160 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMJ96_CH00911 7fb04fc0bafaa78302d37314d1800e42 704 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 4 561 2.5E-192 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMJ96_CH00911 7fb04fc0bafaa78302d37314d1800e42 704 SUPERFAMILY SSF109604 376 517 1.13E-16 T 12-10-2018 AMJ96_CH00911 7fb04fc0bafaa78302d37314d1800e42 704 Pfam PF05746 DALR anticodon binding domain 595 691 2.0E-5 T 12-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMJ96_CH00911 7fb04fc0bafaa78302d37314d1800e42 704 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 248 263 2.2E-20 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMJ96_CH00911 7fb04fc0bafaa78302d37314d1800e42 704 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 48 60 2.2E-20 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMJ96_CH00911 7fb04fc0bafaa78302d37314d1800e42 704 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 420 439 2.2E-20 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMJ96_CH00911 7fb04fc0bafaa78302d37314d1800e42 704 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 5 18 2.2E-20 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMJ96_PC00009 b86ef8b561d7ee22625f6fba841aff4e 235 Pfam PF05977 Transmembrane secretion effector 32 199 2.7E-8 T 12-10-2018 IPR010290 Transmembrane secretion effector AMJ96_PC00009 b86ef8b561d7ee22625f6fba841aff4e 235 SUPERFAMILY SSF103473 31 204 1.07E-10 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_PA00083 21806f62544d5d35fa265625cbeb7238 381 Gene3D G3DSA:2.40.110.10 122 234 2.0E-44 T 12-10-2018 AMJ96_PA00083 21806f62544d5d35fa265625cbeb7238 381 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMJ96_PA00083 21806f62544d5d35fa265625cbeb7238 381 SUPERFAMILY SSF47203 229 379 8.54E-51 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMJ96_PA00083 21806f62544d5d35fa265625cbeb7238 381 SUPERFAMILY SSF56645 2 243 5.76E-84 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMJ96_PA00083 21806f62544d5d35fa265625cbeb7238 381 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 125 137 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMJ96_PA00083 21806f62544d5d35fa265625cbeb7238 381 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 378 6.8E-46 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMJ96_PA00083 21806f62544d5d35fa265625cbeb7238 381 PIRSF PIRSF016578 7 98 0.084 T 12-10-2018 AMJ96_PA00083 21806f62544d5d35fa265625cbeb7238 381 PIRSF PIRSF016578 130 380 1.4E-15 T 12-10-2018 AMJ96_PA00083 21806f62544d5d35fa265625cbeb7238 381 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 119 4.5E-35 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMJ96_PA00083 21806f62544d5d35fa265625cbeb7238 381 Gene3D G3DSA:1.20.140.10 235 380 1.9E-50 T 12-10-2018 AMJ96_PA00083 21806f62544d5d35fa265625cbeb7238 381 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 218 6.3E-25 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMJ96_PA00083 21806f62544d5d35fa265625cbeb7238 381 Gene3D G3DSA:1.10.540.10 1 121 2.0E-44 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMJ96_CH04350 8b0c14386aaab9b8ca8802392f1ea7b5 628 Gene3D G3DSA:1.20.1250.20 19 351 7.4E-52 T 12-10-2018 AMJ96_CH04350 8b0c14386aaab9b8ca8802392f1ea7b5 628 SUPERFAMILY SSF103473 519 624 4.32E-11 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH04350 8b0c14386aaab9b8ca8802392f1ea7b5 628 SUPERFAMILY SSF103473 15 334 9.94E-49 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH04350 8b0c14386aaab9b8ca8802392f1ea7b5 628 ProSitePatterns PS00217 Sugar transport proteins signature 2. 132 157 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMJ96_CH04350 8b0c14386aaab9b8ca8802392f1ea7b5 628 Gene3D G3DSA:1.20.1250.20 501 628 1.1E-12 T 12-10-2018 AMJ96_CH04350 8b0c14386aaab9b8ca8802392f1ea7b5 628 Pfam PF00083 Sugar (and other) transporter 24 239 1.7E-27 T 12-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMJ96_CH04350 8b0c14386aaab9b8ca8802392f1ea7b5 628 Pfam PF00083 Sugar (and other) transporter 502 625 9.3E-9 T 12-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMJ96_CH01147 18cef03cf68310d9b54b35c68ab19c87 681 Pfam PF04134 Protein of unknown function, DUF393 368 477 3.0E-11 T 12-10-2018 IPR007263 Protein of unknown function DUF393 AMJ96_CH00454 17e1e1cba6d59faf0cd20c2eb7fef544 44 Pfam PF00468 Ribosomal protein L34 1 44 3.0E-24 T 12-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH00454 17e1e1cba6d59faf0cd20c2eb7fef544 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 3.5E-24 T 12-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH00454 17e1e1cba6d59faf0cd20c2eb7fef544 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 12-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH00454 17e1e1cba6d59faf0cd20c2eb7fef544 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 15.76 T 12-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH00454 17e1e1cba6d59faf0cd20c2eb7fef544 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 42 2.0E-14 T 12-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04255 9dc51a80a4279298655c1e370ab363b9 257 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 58 71 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site AMJ96_CH04255 9dc51a80a4279298655c1e370ab363b9 257 SMART SM00062 35 254 2.4E-71 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH04255 9dc51a80a4279298655c1e370ab363b9 257 SUPERFAMILY SSF53850 5 254 8.71E-68 T 12-10-2018 AMJ96_CH04255 9dc51a80a4279298655c1e370ab363b9 257 Gene3D G3DSA:3.40.190.10 34 246 8.1E-73 T 12-10-2018 AMJ96_CH04255 9dc51a80a4279298655c1e370ab363b9 257 Gene3D G3DSA:3.40.190.10 118 215 8.1E-73 T 12-10-2018 AMJ96_CH04255 9dc51a80a4279298655c1e370ab363b9 257 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 253 5.3E-65 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PD00485 3a07c8a048ad8deca09733f1ff8a6e1b 278 Pfam PF00756 Putative esterase 21 269 2.9E-52 T 12-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 AMJ96_PD00485 3a07c8a048ad8deca09733f1ff8a6e1b 278 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 3 276 2.8E-136 T 12-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 AMJ96_PD00485 3a07c8a048ad8deca09733f1ff8a6e1b 278 Gene3D G3DSA:3.40.50.1820 1 277 2.2E-90 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PD00485 3a07c8a048ad8deca09733f1ff8a6e1b 278 SUPERFAMILY SSF53474 1 276 6.35E-83 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01867 0dd102e6da55c6083426c94e99e1ce74 405 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 15 398 39.908 T 12-10-2018 IPR023023 dNTP triphosphohydrolase, type 2 GO:0016793 AMJ96_CH01867 0dd102e6da55c6083426c94e99e1ce74 405 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 37 398 2.6E-96 T 12-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 AMJ96_CH01867 0dd102e6da55c6083426c94e99e1ce74 405 SUPERFAMILY SSF109604 26 401 1.05E-86 T 12-10-2018 AMJ96_CH01867 0dd102e6da55c6083426c94e99e1ce74 405 Pfam PF13286 Phosphohydrolase-associated domain 306 396 4.1E-24 T 12-10-2018 IPR026875 Phosphohydrolase-associated domain AMJ96_CH01867 0dd102e6da55c6083426c94e99e1ce74 405 SMART SM00471 71 228 1.6E-10 T 12-10-2018 IPR003607 HD/PDEase domain AMJ96_CH01867 0dd102e6da55c6083426c94e99e1ce74 405 Gene3D G3DSA:1.10.3210.10 8 399 2.8E-123 T 12-10-2018 AMJ96_CH01867 0dd102e6da55c6083426c94e99e1ce74 405 Pfam PF01966 HD domain 75 218 3.9E-14 T 12-10-2018 IPR006674 HD domain AMJ96_PA00021 15866e6900c27b02f9cff2a0408fe22d 337 SUPERFAMILY SSF53850 27 243 1.48E-43 T 12-10-2018 AMJ96_PA00021 15866e6900c27b02f9cff2a0408fe22d 337 Gene3D G3DSA:3.40.190.10 107 204 1.7E-46 T 12-10-2018 AMJ96_PA00021 15866e6900c27b02f9cff2a0408fe22d 337 Gene3D G3DSA:3.40.190.10 31 239 1.7E-46 T 12-10-2018 AMJ96_PA00021 15866e6900c27b02f9cff2a0408fe22d 337 TIGRFAM TIGR01729 taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein 30 329 2.7E-99 T 12-10-2018 IPR010068 Taurine ABC transporter, substrate-binding protein TauA GO:0015734|GO:0042597 AMJ96_PA00021 15866e6900c27b02f9cff2a0408fe22d 337 Pfam PF09084 NMT1/THI5 like 38 239 8.0E-19 T 12-10-2018 IPR015168 SsuA/THI5-like AMJ96_PA00021 15866e6900c27b02f9cff2a0408fe22d 337 SMART SM00062 29 252 2.2E-10 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PA00021 15866e6900c27b02f9cff2a0408fe22d 337 Gene3D G3DSA:1.10.8.450 240 276 1.7E-46 T 12-10-2018 AMJ96_CH04303 90d9185c6d220c16f0b7b09f1219837c 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 1.5E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH04303 90d9185c6d220c16f0b7b09f1219837c 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 1.5E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH04303 90d9185c6d220c16f0b7b09f1219837c 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 1.5E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH04303 90d9185c6d220c16f0b7b09f1219837c 302 Gene3D G3DSA:3.40.190.10 168 265 3.3E-57 T 12-10-2018 AMJ96_CH04303 90d9185c6d220c16f0b7b09f1219837c 302 Gene3D G3DSA:3.40.190.10 108 292 3.3E-57 T 12-10-2018 AMJ96_CH04303 90d9185c6d220c16f0b7b09f1219837c 302 Pfam PF03466 LysR substrate binding domain 96 295 7.8E-39 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH04303 90d9185c6d220c16f0b7b09f1219837c 302 SUPERFAMILY SSF53850 98 297 9.59E-40 T 12-10-2018 AMJ96_CH04303 90d9185c6d220c16f0b7b09f1219837c 302 SUPERFAMILY SSF46785 6 119 3.18E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH04303 90d9185c6d220c16f0b7b09f1219837c 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 71 1.8E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH04303 90d9185c6d220c16f0b7b09f1219837c 302 Gene3D G3DSA:1.10.10.10 11 98 1.7E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00291 93fd5afd6b0bcfb371397dde04ca7c23 357 Gene3D G3DSA:3.90.180.10 13 351 4.0E-129 T 12-10-2018 AMJ96_PD00291 93fd5afd6b0bcfb371397dde04ca7c23 357 SUPERFAMILY SSF50129 3 187 5.63E-34 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_PD00291 93fd5afd6b0bcfb371397dde04ca7c23 357 Gene3D G3DSA:3.40.50.720 167 325 4.0E-129 T 12-10-2018 AMJ96_PD00291 93fd5afd6b0bcfb371397dde04ca7c23 357 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 180 201 - T 12-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 AMJ96_PD00291 93fd5afd6b0bcfb371397dde04ca7c23 357 SUPERFAMILY SSF51735 153 321 2.78E-40 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00291 93fd5afd6b0bcfb371397dde04ca7c23 357 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 35 147 7.3E-12 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_PD00291 93fd5afd6b0bcfb371397dde04ca7c23 357 SMART SM00829 16 352 8.8E-12 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_PD00291 93fd5afd6b0bcfb371397dde04ca7c23 357 Pfam PF00107 Zinc-binding dehydrogenase 191 313 1.1E-22 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_CH04120 fed874a0ba7a5d57489ad02422c2f6d8 294 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 294 33.96 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04120 fed874a0ba7a5d57489ad02422c2f6d8 294 PIRSF PIRSF039089 1 294 2.2E-107 T 12-10-2018 AMJ96_CH04120 fed874a0ba7a5d57489ad02422c2f6d8 294 PRINTS PR00126 ATP synthase gamma subunit signature 171 188 2.3E-31 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04120 fed874a0ba7a5d57489ad02422c2f6d8 294 PRINTS PR00126 ATP synthase gamma subunit signature 241 260 2.3E-31 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04120 fed874a0ba7a5d57489ad02422c2f6d8 294 PRINTS PR00126 ATP synthase gamma subunit signature 76 95 2.3E-31 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04120 fed874a0ba7a5d57489ad02422c2f6d8 294 PRINTS PR00126 ATP synthase gamma subunit signature 272 293 2.3E-31 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04120 fed874a0ba7a5d57489ad02422c2f6d8 294 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 280 293 - T 12-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04120 fed874a0ba7a5d57489ad02422c2f6d8 294 Gene3D G3DSA:3.40.1380.10 61 213 1.4E-93 T 12-10-2018 AMJ96_CH04120 fed874a0ba7a5d57489ad02422c2f6d8 294 Gene3D G3DSA:1.10.287.80 6 290 1.4E-93 T 12-10-2018 AMJ96_CH04120 fed874a0ba7a5d57489ad02422c2f6d8 294 SUPERFAMILY SSF52943 3 294 1.7E-89 T 12-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04120 fed874a0ba7a5d57489ad02422c2f6d8 294 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 294 9.3E-103 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04120 fed874a0ba7a5d57489ad02422c2f6d8 294 Pfam PF00231 ATP synthase 3 294 4.7E-95 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH02891 5328c073924bdf65d586187b05dff268 156 Pfam PF01047 MarR family 43 101 2.6E-15 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH02891 5328c073924bdf65d586187b05dff268 156 SUPERFAMILY SSF46785 11 149 2.0E-31 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02891 5328c073924bdf65d586187b05dff268 156 Gene3D G3DSA:1.10.10.10 12 151 1.6E-32 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02891 5328c073924bdf65d586187b05dff268 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 77 92 4.1E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH02891 5328c073924bdf65d586187b05dff268 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 60 76 4.1E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH02891 5328c073924bdf65d586187b05dff268 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 96 112 4.1E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH02891 5328c073924bdf65d586187b05dff268 156 SMART SM00347 36 134 1.0E-16 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_PB00101 1ec4b94ab538b0fc5d839022f15fd991 439 SUPERFAMILY SSF52540 94 364 1.02E-82 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PB00101 1ec4b94ab538b0fc5d839022f15fd991 439 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 358 8.8E-70 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_PB00101 1ec4b94ab538b0fc5d839022f15fd991 439 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 24 89 1.3E-4 T 12-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_PB00101 1ec4b94ab538b0fc5d839022f15fd991 439 Gene3D G3DSA:3.40.50.12240 13 439 3.7E-128 T 12-10-2018 AMJ96_PB00101 1ec4b94ab538b0fc5d839022f15fd991 439 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 349 358 - T 12-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_PB00101 1ec4b94ab538b0fc5d839022f15fd991 439 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 11 438 3.2E-142 T 12-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_PB00101 1ec4b94ab538b0fc5d839022f15fd991 439 SMART SM00382 161 343 3.6E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00203 53dfd6c84ebc9175b81cab0fe8146e51 297 Gene3D G3DSA:3.40.50.720 4 168 1.2E-44 T 12-10-2018 AMJ96_PA00203 53dfd6c84ebc9175b81cab0fe8146e51 297 PIRSF PIRSF000103 1 296 3.3E-63 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMJ96_PA00203 53dfd6c84ebc9175b81cab0fe8146e51 297 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 171 291 2.0E-24 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMJ96_PA00203 53dfd6c84ebc9175b81cab0fe8146e51 297 Gene3D G3DSA:1.10.1040.10 169 296 2.8E-29 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMJ96_PA00203 53dfd6c84ebc9175b81cab0fe8146e51 297 SUPERFAMILY SSF48179 170 293 1.11E-29 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_PA00203 53dfd6c84ebc9175b81cab0fe8146e51 297 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 8 168 2.4E-39 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMJ96_PA00203 53dfd6c84ebc9175b81cab0fe8146e51 297 SUPERFAMILY SSF51735 7 168 4.34E-37 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00497 94b28a835419b08262a5ff390402cb4b 566 Pfam PF13193 AMP-binding enzyme C-terminal domain 484 558 5.3E-16 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMJ96_CH00497 94b28a835419b08262a5ff390402cb4b 566 Pfam PF00501 AMP-binding enzyme 41 475 5.2E-105 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMJ96_CH00497 94b28a835419b08262a5ff390402cb4b 566 Gene3D G3DSA:3.30.300.310 472 566 5.6E-27 T 12-10-2018 AMJ96_CH00497 94b28a835419b08262a5ff390402cb4b 566 ProSitePatterns PS00455 Putative AMP-binding domain signature. 221 232 - T 12-10-2018 IPR020845 AMP-binding, conserved site AMJ96_CH00497 94b28a835419b08262a5ff390402cb4b 566 Gene3D G3DSA:3.40.50.12780 24 471 7.6E-114 T 12-10-2018 AMJ96_CH00497 94b28a835419b08262a5ff390402cb4b 566 SUPERFAMILY SSF56801 23 565 1.09E-144 T 12-10-2018 AMJ96_PA00286 c6c8bd48e5150bc79fec8f796ef7afa7 338 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 36 317 2.6E-94 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMJ96_PA00286 c6c8bd48e5150bc79fec8f796ef7afa7 338 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 37 291 3.0E-84 T 12-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMJ96_PA00286 c6c8bd48e5150bc79fec8f796ef7afa7 338 Gene3D G3DSA:3.40.190.170 27 338 3.2E-128 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMJ96_PA00286 c6c8bd48e5150bc79fec8f796ef7afa7 338 PIRSF PIRSF006470 1 333 1.1E-117 T 12-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMJ96_CH00041 de5346397288adba71624b3a3a1f1b29 107 Gene3D G3DSA:1.10.287.1080 4 94 6.0E-28 T 12-10-2018 AMJ96_CH00041 de5346397288adba71624b3a3a1f1b29 107 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 3 89 19.697 T 12-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 AMJ96_CH00041 de5346397288adba71624b3a3a1f1b29 107 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 7 92 9.3E-17 T 12-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 AMJ96_CH00041 de5346397288adba71624b3a3a1f1b29 107 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 6 89 1.5E-29 T 12-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 AMJ96_CH00041 de5346397288adba71624b3a3a1f1b29 107 SUPERFAMILY SSF101386 6 93 2.24E-23 T 12-10-2018 AMJ96_PD00451 4efb64091ee726098f2bdee0055903da 258 PIRSF PIRSF006241 1 258 4.6E-80 T 12-10-2018 IPR026040 Hydroxypyruvate isomerase-like AMJ96_PD00451 4efb64091ee726098f2bdee0055903da 258 SUPERFAMILY SSF51658 1 256 2.49E-72 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_PD00451 4efb64091ee726098f2bdee0055903da 258 Gene3D G3DSA:3.20.20.150 1 257 2.5E-64 T 12-10-2018 AMJ96_PD00451 4efb64091ee726098f2bdee0055903da 258 Pfam PF01261 Xylose isomerase-like TIM barrel 21 207 3.8E-25 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMJ96_CH01518 dd689e192508993780e01a59f7b7ae71 181 Gene3D G3DSA:1.10.3300.10 8 177 2.5E-16 T 12-10-2018 IPR023286 ABATE domain superfamily AMJ96_CH01518 dd689e192508993780e01a59f7b7ae71 181 Pfam PF11706 CGNR zinc finger 135 176 2.6E-16 T 12-10-2018 IPR021005 Zinc finger, CGNR AMJ96_CH01518 dd689e192508993780e01a59f7b7ae71 181 SUPERFAMILY SSF160904 4 175 8.63E-35 T 12-10-2018 AMJ96_CH01536 318e70368b6adc57f48213460f89baa9 506 Gene3D G3DSA:3.30.420.40 1 119 7.8E-37 T 12-10-2018 AMJ96_CH01536 318e70368b6adc57f48213460f89baa9 506 Pfam PF02541 Ppx/GppA phosphatase family 31 307 1.6E-44 T 12-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 AMJ96_CH01536 318e70368b6adc57f48213460f89baa9 506 Gene3D G3DSA:1.10.3210.10 306 506 9.6E-68 T 12-10-2018 AMJ96_CH01536 318e70368b6adc57f48213460f89baa9 506 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 16 306 4.3E-95 T 12-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 AMJ96_CH01536 318e70368b6adc57f48213460f89baa9 506 SUPERFAMILY SSF53067 140 308 9.71E-32 T 12-10-2018 AMJ96_CH01536 318e70368b6adc57f48213460f89baa9 506 Gene3D G3DSA:3.30.420.150 120 305 2.0E-57 T 12-10-2018 AMJ96_CH01536 318e70368b6adc57f48213460f89baa9 506 SUPERFAMILY SSF109604 331 465 2.29E-10 T 12-10-2018 AMJ96_CH01536 318e70368b6adc57f48213460f89baa9 506 SUPERFAMILY SSF53067 16 135 6.47E-32 T 12-10-2018 AMJ96_PD00133 c18ca4d29e639c3efedc3c889517a806 301 SUPERFAMILY SSF103481 196 298 2.62E-16 T 12-10-2018 AMJ96_PD00133 c18ca4d29e639c3efedc3c889517a806 301 SUPERFAMILY SSF103481 57 154 1.96E-16 T 12-10-2018 AMJ96_PD00133 c18ca4d29e639c3efedc3c889517a806 301 Pfam PF00892 EamA-like transporter family 24 151 2.6E-19 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_PD00133 c18ca4d29e639c3efedc3c889517a806 301 Pfam PF00892 EamA-like transporter family 165 296 2.7E-21 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH04088 7a5762b06fbe9e926db990d6d268a3ce 640 Pfam PF07944 Beta-L-arabinofuranosidase, GH127 18 551 1.3E-193 T 12-10-2018 IPR012878 Beta-L-arabinofuranosidase, GH127 AMJ96_CH04088 7a5762b06fbe9e926db990d6d268a3ce 640 SUPERFAMILY SSF48208 71 414 3.4E-45 T 12-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 AMJ96_PD00595 5086aceeda2972299c03c4599cf35a84 295 Gene3D G3DSA:2.70.98.10 1 293 1.2E-68 T 12-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AMJ96_PD00595 5086aceeda2972299c03c4599cf35a84 295 Pfam PF01263 Aldose 1-epimerase 4 289 1.6E-24 T 12-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 AMJ96_PD00595 5086aceeda2972299c03c4599cf35a84 295 SUPERFAMILY SSF74650 1 291 5.21E-43 T 12-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 AMJ96_CH01382 f865657c4f2d9598e18e95bf6ab59eb8 279 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 178 217 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_CH01382 f865657c4f2d9598e18e95bf6ab59eb8 279 SMART SM00342 188 270 1.1E-21 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH01382 f865657c4f2d9598e18e95bf6ab59eb8 279 SUPERFAMILY SSF46689 172 222 1.25E-5 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH01382 f865657c4f2d9598e18e95bf6ab59eb8 279 Gene3D G3DSA:1.10.10.60 167 278 2.2E-23 T 12-10-2018 AMJ96_CH01382 f865657c4f2d9598e18e95bf6ab59eb8 279 Pfam PF12833 Helix-turn-helix domain 194 271 2.5E-17 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH01382 f865657c4f2d9598e18e95bf6ab59eb8 279 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 225 266 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_CH01382 f865657c4f2d9598e18e95bf6ab59eb8 279 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 239 254 6.6E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_CH01382 f865657c4f2d9598e18e95bf6ab59eb8 279 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 254 270 6.6E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_CH01382 f865657c4f2d9598e18e95bf6ab59eb8 279 SUPERFAMILY SSF46689 224 273 2.46E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03015 3d5d9c1be18eacadc3e512bdc1f6fea2 374 Gene3D G3DSA:3.40.50.2000 7 351 7.3E-97 T 12-10-2018 AMJ96_CH03015 3d5d9c1be18eacadc3e512bdc1f6fea2 374 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 6 361 31.184 T 12-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH03015 3d5d9c1be18eacadc3e512bdc1f6fea2 374 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 6 142 1.1E-30 T 12-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH03015 3d5d9c1be18eacadc3e512bdc1f6fea2 374 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 187 352 7.1E-36 T 12-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 AMJ96_CH03015 3d5d9c1be18eacadc3e512bdc1f6fea2 374 Gene3D G3DSA:3.40.50.2000 164 345 7.3E-97 T 12-10-2018 AMJ96_CH03015 3d5d9c1be18eacadc3e512bdc1f6fea2 374 SUPERFAMILY SSF53756 6 361 1.41E-99 T 12-10-2018 AMJ96_CH03015 3d5d9c1be18eacadc3e512bdc1f6fea2 374 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 5 356 8.0E-80 T 12-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH01913 524470953a05cec3fb0bd19e5cafd26e 95 SUPERFAMILY SSF141000 3 93 2.75E-28 T 12-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 AMJ96_CH01913 524470953a05cec3fb0bd19e5cafd26e 95 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 95 22.693 T 12-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AMJ96_CH01913 524470953a05cec3fb0bd19e5cafd26e 95 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 20 90 1.1E-18 T 12-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AMJ96_CH01913 524470953a05cec3fb0bd19e5cafd26e 95 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 3 95 1.3E-30 T 12-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 AMJ96_CH01913 524470953a05cec3fb0bd19e5cafd26e 95 Gene3D G3DSA:1.10.20.60 1 93 3.1E-25 T 12-10-2018 AMJ96_CH02016 bb4189c6404ae990a8853abcddf0d7b9 384 Pfam PF00989 PAS fold 19 121 6.1E-8 T 12-10-2018 IPR013767 PAS fold GO:0006355 AMJ96_CH02016 bb4189c6404ae990a8853abcddf0d7b9 384 Gene3D G3DSA:1.10.287.130 145 200 4.6E-11 T 12-10-2018 AMJ96_CH02016 bb4189c6404ae990a8853abcddf0d7b9 384 SUPERFAMILY SSF55874 209 364 4.71E-33 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02016 bb4189c6404ae990a8853abcddf0d7b9 384 SMART SM00388 141 205 1.7E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH02016 bb4189c6404ae990a8853abcddf0d7b9 384 Gene3D G3DSA:3.30.565.10 205 375 2.2E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02016 bb4189c6404ae990a8853abcddf0d7b9 384 SUPERFAMILY SSF47384 136 200 5.69E-10 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH02016 bb4189c6404ae990a8853abcddf0d7b9 384 Gene3D G3DSA:3.30.450.20 15 123 3.1E-9 T 12-10-2018 AMJ96_CH02016 bb4189c6404ae990a8853abcddf0d7b9 384 PRINTS PR00344 Bacterial sensor protein C-terminal signature 317 327 2.8E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02016 bb4189c6404ae990a8853abcddf0d7b9 384 PRINTS PR00344 Bacterial sensor protein C-terminal signature 328 346 2.8E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02016 bb4189c6404ae990a8853abcddf0d7b9 384 PRINTS PR00344 Bacterial sensor protein C-terminal signature 351 364 2.8E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02016 bb4189c6404ae990a8853abcddf0d7b9 384 PRINTS PR00344 Bacterial sensor protein C-terminal signature 299 313 2.8E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02016 bb4189c6404ae990a8853abcddf0d7b9 384 SMART SM00387 246 367 1.3E-29 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH02016 bb4189c6404ae990a8853abcddf0d7b9 384 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 248 365 5.8E-16 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH02016 bb4189c6404ae990a8853abcddf0d7b9 384 Pfam PF00512 His Kinase A (phospho-acceptor) domain 145 200 1.6E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH02016 bb4189c6404ae990a8853abcddf0d7b9 384 SUPERFAMILY SSF55785 19 120 1.47E-6 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH00687 8afe08c0a18ac491a7b2c26549144bd1 248 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 201 217 1.3E-7 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00687 8afe08c0a18ac491a7b2c26549144bd1 248 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 217 229 1.3E-7 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00687 8afe08c0a18ac491a7b2c26549144bd1 248 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 187 201 1.3E-7 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00687 8afe08c0a18ac491a7b2c26549144bd1 248 Gene3D G3DSA:1.10.10.10 180 248 2.8E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00687 8afe08c0a18ac491a7b2c26549144bd1 248 ProSitePatterns PS00622 LuxR-type HTH domain signature. 201 228 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00687 8afe08c0a18ac491a7b2c26549144bd1 248 SUPERFAMILY SSF46894 168 247 2.14E-16 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH00687 8afe08c0a18ac491a7b2c26549144bd1 248 SMART SM00421 184 241 4.5E-16 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00687 8afe08c0a18ac491a7b2c26549144bd1 248 Pfam PF00196 Bacterial regulatory proteins, luxR family 186 240 1.3E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH02296 72322c7951760b018eb92dc9dabf3d64 332 Gene3D G3DSA:3.10.290.10 5 68 7.2E-12 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMJ96_CH02296 72322c7951760b018eb92dc9dabf3d64 332 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 142 156 - T 12-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH02296 72322c7951760b018eb92dc9dabf3d64 332 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 13 314 1.8E-60 T 12-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH02296 72322c7951760b018eb92dc9dabf3d64 332 SUPERFAMILY SSF55120 89 322 4.0E-59 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH02296 72322c7951760b018eb92dc9dabf3d64 332 SUPERFAMILY SSF55174 15 66 1.68E-7 T 12-10-2018 AMJ96_CH02296 72322c7951760b018eb92dc9dabf3d64 332 Gene3D G3DSA:3.30.2350.10 93 318 1.0E-64 T 12-10-2018 AMJ96_CH02296 72322c7951760b018eb92dc9dabf3d64 332 Pfam PF00849 RNA pseudouridylate synthase 103 255 2.2E-33 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_PB00224 c7ae885c65625aa45e9d1c8cef0edd4d 249 SUPERFAMILY SSF161098 14 207 3.53E-37 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PB00224 c7ae885c65625aa45e9d1c8cef0edd4d 249 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 221 1.3E-19 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PB00224 c7ae885c65625aa45e9d1c8cef0edd4d 249 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 116 2.9E-20 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_PB00224 c7ae885c65625aa45e9d1c8cef0edd4d 249 Gene3D G3DSA:1.10.3720.10 4 223 9.5E-45 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00305 ce7efe956e1f79e613d37b3cb11868be 195 Gene3D G3DSA:3.90.280.10 88 195 2.0E-32 T 12-10-2018 IPR036610 PEBP-like superfamily AMJ96_CH00305 ce7efe956e1f79e613d37b3cb11868be 195 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 93 193 2.2E-27 T 12-10-2018 IPR005247 YbhB/YbcL AMJ96_CH00305 ce7efe956e1f79e613d37b3cb11868be 195 SUPERFAMILY SSF49777 93 194 7.46E-29 T 12-10-2018 IPR036610 PEBP-like superfamily AMJ96_CH00305 ce7efe956e1f79e613d37b3cb11868be 195 Pfam PF01161 Phosphatidylethanolamine-binding protein 95 193 5.2E-21 T 12-10-2018 IPR008914 Phosphatidylethanolamine-binding protein AMJ96_PC00295 0d58f0c88b8be172f1481cb07b17251f 250 SUPERFAMILY SSF56529 9 231 2.62E-22 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMJ96_PC00295 0d58f0c88b8be172f1481cb07b17251f 250 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 79 227 4.5E-7 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 AMJ96_PC00295 0d58f0c88b8be172f1481cb07b17251f 250 Gene3D G3DSA:3.90.850.10 6 248 8.0E-33 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMJ96_PD00288 0cb532c57b49430c3356ab804bcfdef7 166 SUPERFAMILY SSF54909 67 152 5.9E-19 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_PD00288 0cb532c57b49430c3356ab804bcfdef7 166 SUPERFAMILY SSF46785 2 60 1.57E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00288 0cb532c57b49430c3356ab804bcfdef7 166 Pfam PF01037 Lrp/AsnC ligand binding domain 70 143 2.9E-20 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMJ96_PD00288 0cb532c57b49430c3356ab804bcfdef7 166 Gene3D G3DSA:3.30.70.920 55 149 1.9E-19 T 12-10-2018 AMJ96_PD00288 0cb532c57b49430c3356ab804bcfdef7 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 2.3E-15 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_PD00288 0cb532c57b49430c3356ab804bcfdef7 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 2.3E-15 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_PD00288 0cb532c57b49430c3356ab804bcfdef7 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 2.3E-15 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_PD00288 0cb532c57b49430c3356ab804bcfdef7 166 SMART SM00344 3 112 4.2E-34 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMJ96_PD00288 0cb532c57b49430c3356ab804bcfdef7 166 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 50 3.0E-17 T 12-10-2018 AMJ96_PD00288 0cb532c57b49430c3356ab804bcfdef7 166 Gene3D G3DSA:1.10.10.10 1 54 2.0E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00851 5d43f30e18eecd573e6ab7facd1af113 98 SMART SM00883 5 97 1.1E-61 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_CH00851 5d43f30e18eecd573e6ab7facd1af113 98 SUPERFAMILY SSF50129 4 97 4.4E-36 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_CH00851 5d43f30e18eecd573e6ab7facd1af113 98 ProSitePatterns PS00681 Chaperonins cpn10 signature. 6 30 - T 12-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 AMJ96_CH00851 5d43f30e18eecd573e6ab7facd1af113 98 Hamap MF_00580 10 kDa chaperonin [groS]. 5 98 27.519 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_CH00851 5d43f30e18eecd573e6ab7facd1af113 98 Gene3D G3DSA:2.30.33.40 1 98 7.4E-40 T 12-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 AMJ96_CH00851 5d43f30e18eecd573e6ab7facd1af113 98 Pfam PF00166 Chaperonin 10 Kd subunit 5 97 1.6E-36 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_CH00851 5d43f30e18eecd573e6ab7facd1af113 98 PRINTS PR00297 10kDa chaperonin signature 84 97 2.1E-34 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_CH00851 5d43f30e18eecd573e6ab7facd1af113 98 PRINTS PR00297 10kDa chaperonin signature 28 49 2.1E-34 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_CH00851 5d43f30e18eecd573e6ab7facd1af113 98 PRINTS PR00297 10kDa chaperonin signature 63 75 2.1E-34 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_CH00851 5d43f30e18eecd573e6ab7facd1af113 98 PRINTS PR00297 10kDa chaperonin signature 6 21 2.1E-34 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_CH03173 6ff7e69fe72e34585937bb71b3185d38 275 SUPERFAMILY SSF48179 168 273 1.38E-30 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_CH03173 6ff7e69fe72e34585937bb71b3185d38 275 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 12 105 2.0E-14 T 12-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal AMJ96_CH03173 6ff7e69fe72e34585937bb71b3185d38 275 Gene3D G3DSA:3.40.50.720 8 169 2.9E-40 T 12-10-2018 AMJ96_CH03173 6ff7e69fe72e34585937bb71b3185d38 275 SUPERFAMILY SSF51735 12 165 1.37E-29 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03173 6ff7e69fe72e34585937bb71b3185d38 275 PIRSF PIRSF000193 10 275 1.2E-62 T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMJ96_CH03173 6ff7e69fe72e34585937bb71b3185d38 275 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 12 273 3.0E-78 T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMJ96_CH03173 6ff7e69fe72e34585937bb71b3185d38 275 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 10 273 25.362 T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMJ96_CH03173 6ff7e69fe72e34585937bb71b3185d38 275 Gene3D G3DSA:1.10.3730.10 170 275 5.6E-38 T 12-10-2018 AMJ96_CH03173 6ff7e69fe72e34585937bb71b3185d38 275 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 168 273 1.4E-32 T 12-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMJ96_CH02452 c65f16dc66d052246009fce4ee01ec49 348 SUPERFAMILY SSF102114 20 293 3.01E-78 T 12-10-2018 AMJ96_CH02452 c65f16dc66d052246009fce4ee01ec49 348 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 21 348 39.526 T 12-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMJ96_CH02452 c65f16dc66d052246009fce4ee01ec49 348 Pfam PF06463 Molybdenum Cofactor Synthesis C 201 327 2.6E-41 T 12-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMJ96_CH02452 c65f16dc66d052246009fce4ee01ec49 348 Pfam PF04055 Radical SAM superfamily 34 195 9.2E-29 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMJ96_CH02452 c65f16dc66d052246009fce4ee01ec49 348 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 36 47 - T 12-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMJ96_CH02452 c65f16dc66d052246009fce4ee01ec49 348 Pfam PF13353 4Fe-4S single cluster domain 37 127 1.3E-9 T 12-10-2018 AMJ96_CH02452 c65f16dc66d052246009fce4ee01ec49 348 SMART SM00729 30 228 4.9E-7 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMJ96_CH02452 c65f16dc66d052246009fce4ee01ec49 348 Gene3D G3DSA:3.20.20.70 18 348 9.0E-91 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH02452 c65f16dc66d052246009fce4ee01ec49 348 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 21 348 2.3E-114 T 12-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMJ96_PB00413 120971b0a94c8209e95aae8538e7fb38 173 Pfam PF04073 Aminoacyl-tRNA editing domain 31 159 3.6E-29 T 12-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMJ96_PB00413 120971b0a94c8209e95aae8538e7fb38 173 Gene3D G3DSA:3.90.960.10 14 165 1.2E-34 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMJ96_PB00413 120971b0a94c8209e95aae8538e7fb38 173 SUPERFAMILY SSF55826 4 163 1.05E-26 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMJ96_CH01428 95b6296aa8b9b709b49811bf717b278e 134 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 61 16.134 T 12-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01428 95b6296aa8b9b709b49811bf717b278e 134 Pfam PF01192 RNA polymerase Rpb6 8 58 7.9E-13 T 12-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AMJ96_CH01428 95b6296aa8b9b709b49811bf717b278e 134 Gene3D G3DSA:3.90.940.10 1 90 1.2E-21 T 12-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AMJ96_CH01428 95b6296aa8b9b709b49811bf717b278e 134 SMART SM01409 8 60 7.7E-13 T 12-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AMJ96_CH01428 95b6296aa8b9b709b49811bf717b278e 134 SUPERFAMILY SSF63562 1 81 4.58E-20 T 12-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 AMJ96_CH01428 95b6296aa8b9b709b49811bf717b278e 134 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 58 2.6E-16 T 12-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH00589 d56129d95daa6a609262c86b57fa5800 350 Pfam PF16113 Enoyl-CoA hydratase/isomerase 15 341 1.6E-119 T 12-10-2018 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 AMJ96_CH00589 d56129d95daa6a609262c86b57fa5800 350 SUPERFAMILY SSF52096 1 328 2.24E-59 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_CH00589 d56129d95daa6a609262c86b57fa5800 350 Gene3D G3DSA:3.90.226.40 1 349 5.4E-120 T 12-10-2018 AMJ96_CH03131 a46cd773fedca6d6190ee0f6d9a3c8e0 484 TIGRFAM TIGR03915 SAM_7_link_chp: probable DNA metabolism protein 9 240 9.8E-64 T 12-10-2018 IPR023875 DNA metabolism protein, putative AMJ96_CH03131 a46cd773fedca6d6190ee0f6d9a3c8e0 484 Gene3D G3DSA:3.40.470.10 282 483 6.6E-60 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_CH03131 a46cd773fedca6d6190ee0f6d9a3c8e0 484 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 300 465 1.8E-41 T 12-10-2018 IPR005273 Uracil-DNA glycosylase family 4 AMJ96_CH03131 a46cd773fedca6d6190ee0f6d9a3c8e0 484 Pfam PF03167 Uracil DNA glycosylase superfamily 314 460 3.3E-38 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_CH03131 a46cd773fedca6d6190ee0f6d9a3c8e0 484 SMART SM00987 314 474 8.2E-37 T 12-10-2018 AMJ96_CH03131 a46cd773fedca6d6190ee0f6d9a3c8e0 484 Pfam PF13566 Domain of unknown function (DUF4130 81 239 2.6E-42 T 12-10-2018 IPR025404 Domain of unknown function DUF4130 AMJ96_CH03131 a46cd773fedca6d6190ee0f6d9a3c8e0 484 SMART SM00986 314 474 8.2E-37 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_CH03131 a46cd773fedca6d6190ee0f6d9a3c8e0 484 TIGRFAM TIGR03914 UDG_fam_dom: uracil-DNA glycosylase family domain 242 474 4.0E-104 T 12-10-2018 IPR005273 Uracil-DNA glycosylase family 4 AMJ96_CH03131 a46cd773fedca6d6190ee0f6d9a3c8e0 484 SUPERFAMILY SSF52141 290 482 1.18E-55 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_CH00280 6f70b77c8054af1ded7f2a3b5992ec1c 165 SUPERFAMILY SSF47240 3 154 2.64E-57 T 12-10-2018 IPR009078 Ferritin-like superfamily AMJ96_CH00280 6f70b77c8054af1ded7f2a3b5992ec1c 165 Pfam PF05974 Domain of unknown function (DUF892) 6 162 1.3E-64 T 12-10-2018 IPR010287 Domain of unknown function DUF892 AMJ96_CH00280 6f70b77c8054af1ded7f2a3b5992ec1c 165 Gene3D G3DSA:1.20.1260.10 1 165 5.5E-65 T 12-10-2018 IPR012347 Ferritin-like AMJ96_PD00113 2ea24cd04a3bd64860afb4bb19b4fc0a 336 Pfam PF13936 Helix-turn-helix domain 5 47 2.7E-15 T 12-10-2018 IPR025246 Transposase IS30-like HTH domain AMJ96_PD00113 2ea24cd04a3bd64860afb4bb19b4fc0a 336 SUPERFAMILY SSF53098 177 327 1.64E-23 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_PD00113 2ea24cd04a3bd64860afb4bb19b4fc0a 336 Pfam PF00665 Integrase core domain 175 285 3.6E-11 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMJ96_PD00113 2ea24cd04a3bd64860afb4bb19b4fc0a 336 Gene3D G3DSA:3.30.420.10 166 333 9.9E-8 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_PB00272 2ea24cd04a3bd64860afb4bb19b4fc0a 336 Pfam PF13936 Helix-turn-helix domain 5 47 2.7E-15 T 12-10-2018 IPR025246 Transposase IS30-like HTH domain AMJ96_PB00272 2ea24cd04a3bd64860afb4bb19b4fc0a 336 SUPERFAMILY SSF53098 177 327 1.64E-23 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_PB00272 2ea24cd04a3bd64860afb4bb19b4fc0a 336 Pfam PF00665 Integrase core domain 175 285 3.6E-11 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMJ96_PB00272 2ea24cd04a3bd64860afb4bb19b4fc0a 336 Gene3D G3DSA:3.30.420.10 166 333 9.9E-8 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_CH04302 d0e6c4ac04ad3162a829eeb0ced2cdea 78 Gene3D G3DSA:3.30.70.920 4 78 3.1E-19 T 12-10-2018 AMJ96_CH04302 d0e6c4ac04ad3162a829eeb0ced2cdea 78 Pfam PF01037 Lrp/AsnC ligand binding domain 6 75 6.0E-14 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMJ96_CH04302 d0e6c4ac04ad3162a829eeb0ced2cdea 78 SUPERFAMILY SSF54909 4 77 6.03E-18 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_PB00302 79be76e94a8dfee6d36ec7851ed700f4 398 Gene3D G3DSA:1.10.260.50 15 280 6.9E-143 T 12-10-2018 AMJ96_PB00302 79be76e94a8dfee6d36ec7851ed700f4 398 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 194 213 - T 12-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AMJ96_PB00302 79be76e94a8dfee6d36ec7851ed700f4 398 PIRSF PIRSF005572 1 382 1.3E-129 T 12-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 AMJ96_PB00302 79be76e94a8dfee6d36ec7851ed700f4 398 Pfam PF00266 Aminotransferase class-V 4 367 8.2E-91 T 12-10-2018 IPR000192 Aminotransferase class V domain AMJ96_PB00302 79be76e94a8dfee6d36ec7851ed700f4 398 Gene3D G3DSA:3.90.1150.10 4 371 6.9E-143 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_PB00302 79be76e94a8dfee6d36ec7851ed700f4 398 Gene3D G3DSA:3.40.640.10 61 236 6.9E-143 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_PB00302 79be76e94a8dfee6d36ec7851ed700f4 398 TIGRFAM TIGR03402 FeS_nifS: cysteine desulfurase NifS 4 380 1.1E-183 T 12-10-2018 IPR017772 Cysteine desulfurase NifS, bacterial/archaeal GO:0006520|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 AMJ96_PB00302 79be76e94a8dfee6d36ec7851ed700f4 398 SUPERFAMILY SSF53383 4 377 3.03E-103 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH00242 8c6e678e1370fe641670c6cc1fcca9bc 343 Pfam PF08666 SAF domain 286 342 1.1E-10 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMJ96_CH00242 8c6e678e1370fe641670c6cc1fcca9bc 343 SUPERFAMILY SSF51269 277 342 7.59E-15 T 12-10-2018 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily Reactome: R-HSA-4085001 AMJ96_CH00242 8c6e678e1370fe641670c6cc1fcca9bc 343 Pfam PF03102 NeuB family 38 268 2.3E-75 T 12-10-2018 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 AMJ96_CH00242 8c6e678e1370fe641670c6cc1fcca9bc 343 Gene3D G3DSA:3.20.20.70 2 290 9.1E-91 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH00242 8c6e678e1370fe641670c6cc1fcca9bc 343 SUPERFAMILY SSF51569 8 295 1.47E-72 T 12-10-2018 AMJ96_CH00242 8c6e678e1370fe641670c6cc1fcca9bc 343 Gene3D G3DSA:3.90.1210.10 291 342 2.7E-11 T 12-10-2018 AMJ96_CH00242 8c6e678e1370fe641670c6cc1fcca9bc 343 SMART SM00858 285 343 7.6E-10 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMJ96_CH00546 b0766a48a2d51be56450f00564cf32ab 669 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 404 556 2.8E-50 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH00546 b0766a48a2d51be56450f00564cf32ab 669 Gene3D G3DSA:1.10.8.500 210 259 6.4E-12 T 12-10-2018 AMJ96_CH00546 b0766a48a2d51be56450f00564cf32ab 669 Pfam PF00672 HAMP domain 211 257 7.7E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH00546 b0766a48a2d51be56450f00564cf32ab 669 SMART SM00283 343 590 2.2E-102 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH00546 b0766a48a2d51be56450f00564cf32ab 669 SUPERFAMILY SSF158472 211 259 3.14E-8 T 12-10-2018 AMJ96_CH00546 b0766a48a2d51be56450f00564cf32ab 669 Gene3D G3DSA:1.10.287.950 289 592 9.7E-79 T 12-10-2018 AMJ96_CH00546 b0766a48a2d51be56450f00564cf32ab 669 SMART SM00304 290 342 0.022 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH00546 b0766a48a2d51be56450f00564cf32ab 669 SMART SM00304 209 262 1.5E-6 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH00546 b0766a48a2d51be56450f00564cf32ab 669 SUPERFAMILY SSF58104 310 591 3.27E-69 T 12-10-2018 AMJ96_CH03998 8ca6c055e787ac2158421eedcf68a0c3 755 SUPERFAMILY SSF55781 12 160 1.24E-26 T 12-10-2018 AMJ96_CH03998 8ca6c055e787ac2158421eedcf68a0c3 755 Pfam PF00391 PEP-utilising enzyme, mobile domain 331 403 1.0E-14 T 12-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMJ96_CH03998 8ca6c055e787ac2158421eedcf68a0c3 755 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 183 733 4.4E-126 T 12-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 AMJ96_CH03998 8ca6c055e787ac2158421eedcf68a0c3 755 SUPERFAMILY SSF52009 302 421 1.02E-25 T 12-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 AMJ96_CH03998 8ca6c055e787ac2158421eedcf68a0c3 755 Gene3D G3DSA:3.20.20.60 411 753 8.5E-95 T 12-10-2018 AMJ96_CH03998 8ca6c055e787ac2158421eedcf68a0c3 755 SUPERFAMILY SSF47831 200 320 5.23E-29 T 12-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 AMJ96_CH03998 8ca6c055e787ac2158421eedcf68a0c3 755 SMART SM00065 24 170 2.2E-16 T 12-10-2018 IPR003018 GAF domain GO:0005515 AMJ96_CH03998 8ca6c055e787ac2158421eedcf68a0c3 755 Gene3D G3DSA:3.50.30.10 189 410 3.7E-50 T 12-10-2018 AMJ96_CH03998 8ca6c055e787ac2158421eedcf68a0c3 755 Gene3D G3DSA:1.10.274.10 201 323 3.7E-50 T 12-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 AMJ96_CH03998 8ca6c055e787ac2158421eedcf68a0c3 755 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 625 640 6.5E-18 T 12-10-2018 AMJ96_CH03998 8ca6c055e787ac2158421eedcf68a0c3 755 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 471 490 6.5E-18 T 12-10-2018 AMJ96_CH03998 8ca6c055e787ac2158421eedcf68a0c3 755 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 642 657 6.5E-18 T 12-10-2018 AMJ96_CH03998 8ca6c055e787ac2158421eedcf68a0c3 755 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 678 690 6.5E-18 T 12-10-2018 AMJ96_CH03998 8ca6c055e787ac2158421eedcf68a0c3 755 Pfam PF13185 GAF domain 24 160 2.7E-15 T 12-10-2018 IPR003018 GAF domain GO:0005515 AMJ96_CH03998 8ca6c055e787ac2158421eedcf68a0c3 755 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 625 643 - T 12-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AMJ96_CH03998 8ca6c055e787ac2158421eedcf68a0c3 755 SUPERFAMILY SSF51621 427 725 2.07E-91 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMJ96_CH03998 8ca6c055e787ac2158421eedcf68a0c3 755 Pfam PF05524 PEP-utilising enzyme, N-terminal 188 303 1.8E-21 T 12-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AMJ96_CH03998 8ca6c055e787ac2158421eedcf68a0c3 755 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 430 716 2.0E-88 T 12-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AMJ96_CH03998 8ca6c055e787ac2158421eedcf68a0c3 755 Gene3D G3DSA:3.30.450.40 10 169 1.2E-38 T 12-10-2018 IPR029016 GAF-like domain superfamily AMJ96_PC00462 3460334c4a9fa6e76ab3932683d2897b 243 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 10 24 - T 12-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMJ96_PC00462 3460334c4a9fa6e76ab3932683d2897b 243 Gene3D G3DSA:3.40.1010.10 4 136 4.3E-32 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMJ96_PC00462 3460334c4a9fa6e76ab3932683d2897b 243 PIRSF PIRSF036427 3 242 1.6E-72 T 12-10-2018 IPR012382 Precorrin-2 C(20)-methyltransferase GO:0008757|GO:0009236|GO:0030788 AMJ96_PC00462 3460334c4a9fa6e76ab3932683d2897b 243 Gene3D G3DSA:3.30.950.10 138 242 2.0E-14 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AMJ96_PC00462 3460334c4a9fa6e76ab3932683d2897b 243 SUPERFAMILY SSF53790 4 240 6.02E-48 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMJ96_PC00462 3460334c4a9fa6e76ab3932683d2897b 243 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 5 237 2.7E-73 T 12-10-2018 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 AMJ96_PC00462 3460334c4a9fa6e76ab3932683d2897b 243 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 6 218 9.4E-50 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMJ96_PD00446 e7eec4bff3c3e2ebdbc9e1e653326777 424 Pfam PF01266 FAD dependent oxidoreductase 28 381 3.0E-61 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_PD00446 e7eec4bff3c3e2ebdbc9e1e653326777 424 Gene3D G3DSA:3.30.9.10 120 345 2.6E-81 T 12-10-2018 AMJ96_PD00446 e7eec4bff3c3e2ebdbc9e1e653326777 424 Gene3D G3DSA:3.50.50.60 28 383 2.6E-81 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00446 e7eec4bff3c3e2ebdbc9e1e653326777 424 SUPERFAMILY SSF51905 25 403 3.11E-49 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00446 e7eec4bff3c3e2ebdbc9e1e653326777 424 PRINTS PR00419 Adrenodoxin reductase family signature 27 49 6.1E-5 T 12-10-2018 AMJ96_PD00446 e7eec4bff3c3e2ebdbc9e1e653326777 424 PRINTS PR00419 Adrenodoxin reductase family signature 269 282 6.1E-5 T 12-10-2018 AMJ96_CH00982 81d7cdffd4b74d5751cf11b61bd756a2 333 Pfam PF02401 LytB protein 12 291 1.3E-81 T 12-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AMJ96_CH00982 81d7cdffd4b74d5751cf11b61bd756a2 333 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 9 296 35.397 T 12-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AMJ96_CH00982 81d7cdffd4b74d5751cf11b61bd756a2 333 Gene3D G3DSA:3.40.50.11270 20 107 1.0E-99 T 12-10-2018 AMJ96_CH00982 81d7cdffd4b74d5751cf11b61bd756a2 333 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 10 294 6.7E-97 T 12-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AMJ96_CH00982 81d7cdffd4b74d5751cf11b61bd756a2 333 Gene3D G3DSA:3.40.1010.20 16 290 1.0E-99 T 12-10-2018 AMJ96_CH00982 81d7cdffd4b74d5751cf11b61bd756a2 333 Gene3D G3DSA:3.40.1010.20 108 205 1.0E-99 T 12-10-2018 AMJ96_CH03802 bdb4e985f6546fb63122fdd0a9532746 343 PRINTS PR00721 Stomatin signature 133 156 1.2E-32 T 12-10-2018 IPR001972 Stomatin family GO:0016020 AMJ96_CH03802 bdb4e985f6546fb63122fdd0a9532746 343 PRINTS PR00721 Stomatin signature 30 52 1.2E-32 T 12-10-2018 IPR001972 Stomatin family GO:0016020 AMJ96_CH03802 bdb4e985f6546fb63122fdd0a9532746 343 PRINTS PR00721 Stomatin signature 157 175 1.2E-32 T 12-10-2018 IPR001972 Stomatin family GO:0016020 AMJ96_CH03802 bdb4e985f6546fb63122fdd0a9532746 343 PRINTS PR00721 Stomatin signature 78 99 1.2E-32 T 12-10-2018 IPR001972 Stomatin family GO:0016020 AMJ96_CH03802 bdb4e985f6546fb63122fdd0a9532746 343 PRINTS PR00721 Stomatin signature 113 130 1.2E-32 T 12-10-2018 IPR001972 Stomatin family GO:0016020 AMJ96_CH03802 bdb4e985f6546fb63122fdd0a9532746 343 PRINTS PR00721 Stomatin signature 176 197 1.2E-32 T 12-10-2018 IPR001972 Stomatin family GO:0016020 AMJ96_CH03802 bdb4e985f6546fb63122fdd0a9532746 343 SUPERFAMILY SSF117892 55 188 2.75E-42 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily AMJ96_CH03802 bdb4e985f6546fb63122fdd0a9532746 343 Pfam PF01145 SPFH domain / Band 7 family 27 196 3.7E-36 T 12-10-2018 IPR001107 Band 7 domain AMJ96_CH03802 bdb4e985f6546fb63122fdd0a9532746 343 Gene3D G3DSA:3.30.479.30 51 183 1.5E-41 T 12-10-2018 AMJ96_CH03802 bdb4e985f6546fb63122fdd0a9532746 343 SMART SM00244 23 181 1.7E-55 T 12-10-2018 IPR001107 Band 7 domain AMJ96_PC00010 9888ef124d1701fa949fd472ff17f720 693 Pfam PF00905 Penicillin binding protein transpeptidase domain 305 523 5.9E-13 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMJ96_PC00010 9888ef124d1701fa949fd472ff17f720 693 Gene3D G3DSA:3.40.710.10 256 597 3.0E-68 T 12-10-2018 AMJ96_PC00010 9888ef124d1701fa949fd472ff17f720 693 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 606 689 2.2E-19 T 12-10-2018 IPR009647 Penicillin-binding, C-terminal KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_PC00010 9888ef124d1701fa949fd472ff17f720 693 SUPERFAMILY SSF56601 210 582 2.63E-80 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMJ96_PC00010 9888ef124d1701fa949fd472ff17f720 693 Gene3D G3DSA:1.10.3810.10 54 249 1.9E-50 T 12-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_PC00010 9888ef124d1701fa949fd472ff17f720 693 Pfam PF00912 Transglycosylase 61 228 7.7E-46 T 12-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_PC00010 9888ef124d1701fa949fd472ff17f720 693 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 34 577 7.5E-189 T 12-10-2018 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_PC00010 9888ef124d1701fa949fd472ff17f720 693 SUPERFAMILY SSF53955 45 260 2.7E-59 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily AMJ96_PD00020 32dbe8b37a6c29f314f1ae1fecb2686e 254 SUPERFAMILY SSF51735 1 213 1.21E-33 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00020 32dbe8b37a6c29f314f1ae1fecb2686e 254 Gene3D G3DSA:3.40.50.720 2 248 2.1E-34 T 12-10-2018 AMJ96_PD00020 32dbe8b37a6c29f314f1ae1fecb2686e 254 Pfam PF13460 NAD(P)H-binding 7 173 6.3E-12 T 12-10-2018 IPR016040 NAD(P)-binding domain AMJ96_CH01789 a2ef74857be87f83e87d2af862f9fa37 263 ProSitePatterns PS00367 Biopterin-dependent aromatic amino acid hydroxylases signature. 118 129 - T 12-10-2018 IPR018301 Aromatic amino acid hydroxylase, iron/copper binding site GO:0004497|GO:0005506|GO:0009072|GO:0055114 AMJ96_CH01789 a2ef74857be87f83e87d2af862f9fa37 263 TIGRFAM TIGR01267 Phe4hydrox_mono: phenylalanine-4-hydroxylase 15 257 3.4E-82 T 12-10-2018 IPR005960 Phenylalanine-4-hydroxylase, monomeric form GO:0004505|GO:0006559|GO:0055114 KEGG: 00360+1.14.16.1|KEGG: 00400+1.14.16.1|KEGG: 00790+1.14.16.1|MetaCyc: PWY-6134|MetaCyc: PWY-7158 AMJ96_CH01789 a2ef74857be87f83e87d2af862f9fa37 263 SUPERFAMILY SSF56534 4 249 5.62E-86 T 12-10-2018 IPR036329 Aromatic amino acid monoxygenase, C-terminal domain superfamily AMJ96_CH01789 a2ef74857be87f83e87d2af862f9fa37 263 Gene3D G3DSA:1.10.800.10 1 263 1.5E-88 T 12-10-2018 IPR036951 Aromatic amino acid hydroxylase superfamily GO:0004497|GO:0005506|GO:0009072|GO:0055114 AMJ96_CH01789 a2ef74857be87f83e87d2af862f9fa37 263 Pfam PF00351 Biopterin-dependent aromatic amino acid hydroxylase 19 235 2.0E-41 T 12-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 AMJ96_CH02079 f060368a471263b07640856a229a9600 287 Gene3D G3DSA:3.40.50.1370 6 283 2.2E-45 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMJ96_CH02079 f060368a471263b07640856a229a9600 287 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 4 140 5.6E-21 T 12-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AMJ96_CH02079 f060368a471263b07640856a229a9600 287 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 148 283 1.1E-13 T 12-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AMJ96_CH02079 f060368a471263b07640856a229a9600 287 Gene3D G3DSA:3.40.50.1370 131 273 2.2E-45 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMJ96_CH02079 f060368a471263b07640856a229a9600 287 SUPERFAMILY SSF53671 2 285 2.1E-47 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMJ96_CH01640 de59c0d959374ba2eed9b1b8aae3424b 434 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 166 181 - T 12-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01640 de59c0d959374ba2eed9b1b8aae3424b 434 SUPERFAMILY SSF142019 3 238 3.79E-84 T 12-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01640 de59c0d959374ba2eed9b1b8aae3424b 434 SMART SM00928 330 375 4.5E-25 T 12-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01640 de59c0d959374ba2eed9b1b8aae3424b 434 Gene3D G3DSA:3.40.50.11540 52 230 2.7E-80 T 12-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01640 de59c0d959374ba2eed9b1b8aae3424b 434 SUPERFAMILY SSF142984 240 325 1.31E-23 T 12-10-2018 AMJ96_CH01640 de59c0d959374ba2eed9b1b8aae3424b 434 SUPERFAMILY SSF140490 326 419 1.83E-35 T 12-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01640 de59c0d959374ba2eed9b1b8aae3424b 434 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 47 216 9.6E-50 T 12-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01640 de59c0d959374ba2eed9b1b8aae3424b 434 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 8 416 1.3E-197 T 12-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01640 de59c0d959374ba2eed9b1b8aae3424b 434 Gene3D G3DSA:1.20.1440.230 328 428 1.9E-38 T 12-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01640 de59c0d959374ba2eed9b1b8aae3424b 434 Pfam PF10531 SLBB domain 243 292 3.9E-8 T 12-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01640 de59c0d959374ba2eed9b1b8aae3424b 434 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 343 354 - T 12-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01640 de59c0d959374ba2eed9b1b8aae3424b 434 Gene3D G3DSA:3.10.20.600 231 327 2.1E-36 T 12-10-2018 AMJ96_CH01640 de59c0d959374ba2eed9b1b8aae3424b 434 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 332 414 2.0E-30 T 12-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_PA00193 e3a4ac70fc94a4fcbd8da6b9cd182224 667 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 17 502 8.2E-66 T 12-10-2018 IPR005674 CocE/Serine esterase GO:0016787 AMJ96_PA00193 e3a4ac70fc94a4fcbd8da6b9cd182224 667 Gene3D G3DSA:3.40.50.1820 14 311 3.9E-62 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PA00193 e3a4ac70fc94a4fcbd8da6b9cd182224 667 SUPERFAMILY SSF53474 4 333 8.36E-68 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PA00193 e3a4ac70fc94a4fcbd8da6b9cd182224 667 Gene3D G3DSA:2.60.120.260 331 518 2.3E-33 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily AMJ96_PA00193 e3a4ac70fc94a4fcbd8da6b9cd182224 667 Gene3D G3DSA:1.10.3020.10 149 222 3.9E-62 T 12-10-2018 AMJ96_PA00193 e3a4ac70fc94a4fcbd8da6b9cd182224 667 SUPERFAMILY SSF49785 287 524 2.55E-46 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily AMJ96_PA00193 e3a4ac70fc94a4fcbd8da6b9cd182224 667 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 298 519 9.3E-46 T 12-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMJ96_PA00193 e3a4ac70fc94a4fcbd8da6b9cd182224 667 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 18 269 5.6E-62 T 12-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 AMJ96_PA00193 e3a4ac70fc94a4fcbd8da6b9cd182224 667 SMART SM00939 286 544 4.6E-67 T 12-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 AMJ96_CH00259 ae7247776882f6e63fc3ae0f35ec47fc 232 SUPERFAMILY SSF48613 10 225 4.75E-67 T 12-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AMJ96_CH00259 ae7247776882f6e63fc3ae0f35ec47fc 232 Gene3D G3DSA:1.20.910.10 4 232 1.3E-65 T 12-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 AMJ96_CH00259 ae7247776882f6e63fc3ae0f35ec47fc 232 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 26 226 1.9E-40 T 12-10-2018 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356 AMJ96_CH00259 ae7247776882f6e63fc3ae0f35ec47fc 232 Pfam PF03070 TENA/THI-4/PQQC family 19 226 4.0E-41 T 12-10-2018 IPR004305 Thiaminase-2/PQQC AMJ96_CH01811 4df133eb949aec4200cd880d2a1221b9 416 Gene3D G3DSA:3.40.50.1100 18 322 5.2E-96 T 12-10-2018 AMJ96_CH01811 4df133eb949aec4200cd880d2a1221b9 416 Gene3D G3DSA:3.40.50.1100 49 149 5.2E-96 T 12-10-2018 AMJ96_CH01811 4df133eb949aec4200cd880d2a1221b9 416 TIGRFAM TIGR02079 THD1: threonine dehydratase 5 416 8.5E-179 T 12-10-2018 IPR011820 L-threonine dehydratase biosynthetic IlvA GO:0004794 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AMJ96_CH01811 4df133eb949aec4200cd880d2a1221b9 416 Gene3D G3DSA:3.40.1020.10 324 415 3.7E-8 T 12-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AMJ96_CH01811 4df133eb949aec4200cd880d2a1221b9 416 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 41 54 - T 12-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AMJ96_CH01811 4df133eb949aec4200cd880d2a1221b9 416 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 20 311 1.4E-67 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMJ96_CH01811 4df133eb949aec4200cd880d2a1221b9 416 SUPERFAMILY SSF53686 6 357 1.44E-86 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMJ96_CH01811 4df133eb949aec4200cd880d2a1221b9 416 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 324 414 1.9E-18 T 12-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AMJ96_CH01811 4df133eb949aec4200cd880d2a1221b9 416 SUPERFAMILY SSF55021 335 411 1.24E-12 T 12-10-2018 AMJ96_CH04298 829f04938bd7ad6a836922e8a2b8f9ef 826 SUPERFAMILY SSF49303 239 273 8.63E-7 T 12-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily AMJ96_CH04298 829f04938bd7ad6a836922e8a2b8f9ef 826 SUPERFAMILY SSF51445 285 631 2.84E-74 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH04298 829f04938bd7ad6a836922e8a2b8f9ef 826 Gene3D G3DSA:3.20.20.80 287 629 1.6E-68 T 12-10-2018 AMJ96_CH04298 829f04938bd7ad6a836922e8a2b8f9ef 826 SUPERFAMILY SSF49303 742 817 1.73E-10 T 12-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily AMJ96_CH04298 829f04938bd7ad6a836922e8a2b8f9ef 826 Gene3D G3DSA:2.60.120.260 36 193 3.3E-16 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily AMJ96_CH04298 829f04938bd7ad6a836922e8a2b8f9ef 826 SUPERFAMILY SSF49785 14 190 4.42E-24 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily AMJ96_PD00269 0ab4a6270e9f4fc1a78f228888b36e0d 223 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 111 6.4E-29 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_PD00269 0ab4a6270e9f4fc1a78f228888b36e0d 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 207 1.5E-12 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00269 0ab4a6270e9f4fc1a78f228888b36e0d 223 Gene3D G3DSA:1.10.3720.10 4 214 3.1E-45 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00269 0ab4a6270e9f4fc1a78f228888b36e0d 223 SUPERFAMILY SSF161098 15 202 2.22E-37 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01599 3c6e5209de58c69c7c05da4f0fa34ef3 310 Gene3D G3DSA:3.40.50.720 15 120 8.6E-19 T 12-10-2018 AMJ96_CH01599 3c6e5209de58c69c7c05da4f0fa34ef3 310 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 112 128 - T 12-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMJ96_CH01599 3c6e5209de58c69c7c05da4f0fa34ef3 310 SUPERFAMILY SSF51735 1 136 6.82E-31 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01599 3c6e5209de58c69c7c05da4f0fa34ef3 310 SUPERFAMILY SSF55347 117 291 1.16E-31 T 12-10-2018 AMJ96_CH01599 3c6e5209de58c69c7c05da4f0fa34ef3 310 Hamap MF_01110 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 1 310 54.226 T 12-10-2018 IPR010136 N-acetyl-gamma-glutamyl-phosphate reductase, type 2 GO:0003942|GO:0005737|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMJ96_CH01599 3c6e5209de58c69c7c05da4f0fa34ef3 310 SMART SM00859 4 106 4.9E-17 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMJ96_CH01599 3c6e5209de58c69c7c05da4f0fa34ef3 310 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 43 105 1.4E-9 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AMJ96_CH01599 3c6e5209de58c69c7c05da4f0fa34ef3 310 TIGRFAM TIGR01851 argC_other: N-acetyl-gamma-glutamyl-phosphate reductase 2 308 3.0E-127 T 12-10-2018 IPR010136 N-acetyl-gamma-glutamyl-phosphate reductase, type 2 GO:0003942|GO:0005737|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMJ96_CH01599 3c6e5209de58c69c7c05da4f0fa34ef3 310 Gene3D G3DSA:3.30.360.10 121 295 3.5E-31 T 12-10-2018 AMJ96_CH02326 778f9a271cc0b60517893d78ca7bdb80 521 Pfam PF00271 Helicase conserved C-terminal domain 254 363 8.1E-30 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH02326 778f9a271cc0b60517893d78ca7bdb80 521 Gene3D G3DSA:3.40.50.300 7 232 4.7E-79 T 12-10-2018 AMJ96_CH02326 778f9a271cc0b60517893d78ca7bdb80 521 SMART SM00490 282 363 1.5E-31 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH02326 778f9a271cc0b60517893d78ca7bdb80 521 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 174 182 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AMJ96_CH02326 778f9a271cc0b60517893d78ca7bdb80 521 SUPERFAMILY SSF52540 96 383 3.08E-75 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02326 778f9a271cc0b60517893d78ca7bdb80 521 Pfam PF00270 DEAD/DEAH box helicase 48 217 6.7E-51 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMJ96_CH02326 778f9a271cc0b60517893d78ca7bdb80 521 SMART SM00487 43 243 7.8E-67 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMJ96_CH02326 778f9a271cc0b60517893d78ca7bdb80 521 Gene3D G3DSA:3.40.50.300 235 478 3.2E-51 T 12-10-2018 AMJ96_CH01415 746fb2621414b8067f771f912f410259 1487 Pfam PF05345 Putative Ig domain 1266 1310 7.4E-10 T 12-10-2018 IPR008009 Putative Ig AMJ96_CH01415 746fb2621414b8067f771f912f410259 1487 SUPERFAMILY SSF81296 849 941 2.1E-16 T 12-10-2018 IPR014756 Immunoglobulin E-set AMJ96_CH01415 746fb2621414b8067f771f912f410259 1487 SUPERFAMILY SSF49313 1228 1323 2.98E-24 T 12-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 AMJ96_CH01415 746fb2621414b8067f771f912f410259 1487 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1160 1237 6.1E-14 T 12-10-2018 IPR010221 VCBS repeat AMJ96_CH01415 746fb2621414b8067f771f912f410259 1487 Gene3D G3DSA:2.60.40.650 850 943 6.4E-12 T 12-10-2018 AMJ96_CH01415 746fb2621414b8067f771f912f410259 1487 Gene3D G3DSA:2.60.40.10 1225 1327 3.4E-24 T 12-10-2018 IPR013783 Immunoglobulin-like fold AMJ96_CH01415 746fb2621414b8067f771f912f410259 1487 SMART SM00736 1230 1328 4.5E-36 T 12-10-2018 IPR006644 Dystroglycan-type cadherin-like GO:0016020 AMJ96_CH01415 746fb2621414b8067f771f912f410259 1487 Pfam PF13313 Domain of unknown function (DUF4082) 1330 1476 7.1E-50 T 12-10-2018 IPR025141 Domain of unknown function DUF4082 AMJ96_CH01415 746fb2621414b8067f771f912f410259 1487 Pfam PF13313 Domain of unknown function (DUF4082) 949 1090 4.0E-55 T 12-10-2018 IPR025141 Domain of unknown function DUF4082 AMJ96_CH04380 4ccbd77157fa65627012a4868bcc3dc7 421 SUPERFAMILY SSF68912 4 48 1.18E-11 T 12-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily AMJ96_CH04380 4ccbd77157fa65627012a4868bcc3dc7 421 SMART SM00382 173 358 1.1E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04380 4ccbd77157fa65627012a4868bcc3dc7 421 SUPERFAMILY SSF52540 93 374 7.91E-70 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04380 4ccbd77157fa65627012a4868bcc3dc7 421 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 163 366 5.6E-23 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_CH04380 4ccbd77157fa65627012a4868bcc3dc7 421 Gene3D G3DSA:3.40.50.300 133 420 1.4E-128 T 12-10-2018 AMJ96_CH04380 4ccbd77157fa65627012a4868bcc3dc7 421 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 421 248.339 T 12-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AMJ96_CH04380 4ccbd77157fa65627012a4868bcc3dc7 421 SUPERFAMILY SSF50249 51 128 1.94E-28 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH04380 4ccbd77157fa65627012a4868bcc3dc7 421 SMART SM00959 8 50 4.0E-18 T 12-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 AMJ96_CH04380 4ccbd77157fa65627012a4868bcc3dc7 421 Pfam PF07497 Rho termination factor, RNA-binding domain 55 128 1.3E-30 T 12-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 AMJ96_CH04380 4ccbd77157fa65627012a4868bcc3dc7 421 SMART SM00357 55 121 3.3E-18 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 AMJ96_CH04380 4ccbd77157fa65627012a4868bcc3dc7 421 Gene3D G3DSA:1.10.720.10 1 48 5.1E-16 T 12-10-2018 AMJ96_CH04380 4ccbd77157fa65627012a4868bcc3dc7 421 Pfam PF07498 Rho termination factor, N-terminal domain 8 49 1.4E-16 T 12-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 AMJ96_CH04380 4ccbd77157fa65627012a4868bcc3dc7 421 Gene3D G3DSA:2.40.50.140 50 126 4.3E-33 T 12-10-2018 AMJ96_CH04380 4ccbd77157fa65627012a4868bcc3dc7 421 TIGRFAM TIGR00767 rho: transcription termination factor Rho 5 420 1.3E-214 T 12-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AMJ96_CH01469 50ede19801927d4ee9e20f24c1ae965e 537 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 202 215 - T 12-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMJ96_CH01469 50ede19801927d4ee9e20f24c1ae965e 537 SUPERFAMILY SSF51569 1 297 3.85E-77 T 12-10-2018 AMJ96_CH01469 50ede19801927d4ee9e20f24c1ae965e 537 SUPERFAMILY SSF110921 421 520 7.85E-18 T 12-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMJ96_CH01469 50ede19801927d4ee9e20f24c1ae965e 537 TIGRFAM TIGR00977 citramal_synth: citramalate synthase 5 528 1.8E-178 T 12-10-2018 IPR005675 Citramalate synthase GO:0019752|GO:0046912 KEGG: 00290+2.3.1.182|KEGG: 00660+2.3.1.182|MetaCyc: PWY-5101 AMJ96_CH01469 50ede19801927d4ee9e20f24c1ae965e 537 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 12-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMJ96_CH01469 50ede19801927d4ee9e20f24c1ae965e 537 SMART SM00917 379 524 1.3E-34 T 12-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMJ96_CH01469 50ede19801927d4ee9e20f24c1ae965e 537 Gene3D G3DSA:3.20.20.70 4 330 1.6E-102 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH01469 50ede19801927d4ee9e20f24c1ae965e 537 Pfam PF00682 HMGL-like 4 272 2.6E-48 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AMJ96_CH01469 50ede19801927d4ee9e20f24c1ae965e 537 Pfam PF08502 LeuA allosteric (dimerisation) domain 379 521 3.9E-25 T 12-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AMJ96_CH01469 50ede19801927d4ee9e20f24c1ae965e 537 Gene3D G3DSA:3.30.160.270 403 521 1.5E-7 T 12-10-2018 AMJ96_CH03250 673f59a8a13dd0c2c8fec94932c1e74c 99 Pfam PF13103 TonB C terminal 22 76 7.3E-6 T 12-10-2018 AMJ96_CH03250 673f59a8a13dd0c2c8fec94932c1e74c 99 SUPERFAMILY SSF74653 28 80 5.89E-5 T 12-10-2018 AMJ96_CH01762 0f8bbb2821f11ef3d85e775fda46d407 540 Pfam PF01144 Coenzyme A transferase 9 251 1.1E-29 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMJ96_CH01762 0f8bbb2821f11ef3d85e775fda46d407 540 SUPERFAMILY SSF100950 5 270 2.12E-77 T 12-10-2018 IPR037171 NagB/RpiA transferase-like AMJ96_CH01762 0f8bbb2821f11ef3d85e775fda46d407 540 Gene3D G3DSA:3.40.1080.10 1 273 1.6E-91 T 12-10-2018 AMJ96_CH01762 0f8bbb2821f11ef3d85e775fda46d407 540 Gene3D G3DSA:3.40.1080.10 282 531 3.8E-88 T 12-10-2018 AMJ96_CH01762 0f8bbb2821f11ef3d85e775fda46d407 540 SMART SM00882 7 252 2.0E-56 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMJ96_CH01762 0f8bbb2821f11ef3d85e775fda46d407 540 PIRSF PIRSF000858 2 531 1.8E-186 T 12-10-2018 IPR014388 3-oxoacid CoA-transferase GO:0008410|GO:0046952 Reactome: R-HSA-77108 AMJ96_CH01762 0f8bbb2821f11ef3d85e775fda46d407 540 SUPERFAMILY SSF100950 282 523 1.79E-63 T 12-10-2018 IPR037171 NagB/RpiA transferase-like AMJ96_PA00145 e9a0c5572b6ddb4080071cb68aebb4ab 271 SUPERFAMILY SSF52540 31 206 2.58E-33 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00145 e9a0c5572b6ddb4080071cb68aebb4ab 271 Pfam PF08406 CbbQ/NirQ/NorQ C-terminal 184 267 6.3E-26 T 12-10-2018 IPR013615 CbbQ/NirQ/NorQ, C-terminal AMJ96_PA00145 e9a0c5572b6ddb4080071cb68aebb4ab 271 Gene3D G3DSA:3.40.50.300 21 188 7.4E-31 T 12-10-2018 AMJ96_PA00145 e9a0c5572b6ddb4080071cb68aebb4ab 271 Pfam PF07728 AAA domain (dynein-related subfamily) 38 171 4.4E-36 T 12-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 AMJ96_CH00990 9f546eedbc65295fa0ed8baa5be5e775 161 SUPERFAMILY SSF52833 1 161 9.96E-31 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH00990 9f546eedbc65295fa0ed8baa5be5e775 161 Gene3D G3DSA:3.40.30.10 2 161 3.4E-55 T 12-10-2018 AMJ96_CH00990 9f546eedbc65295fa0ed8baa5be5e775 161 Pfam PF08534 Redoxin 6 158 3.0E-35 T 12-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 AMJ96_CH00246 52a5afab68c9bb7afb53f9f8653a3feb 402 Pfam PF05893 Acyl-CoA reductase (LuxC) 80 279 3.0E-26 T 12-10-2018 IPR008670 Long-chain-fatty-acyl-CoA reductase, LuxC GO:0003995|GO:0008218|GO:0055114 KEGG: 00073+1.2.1.50|MetaCyc: PWY-7723 AMJ96_CH00246 52a5afab68c9bb7afb53f9f8653a3feb 402 SUPERFAMILY SSF53720 68 156 2.49E-6 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_CH03036 6a11b06f223854129d7bd268a435fd8c 223 Gene3D G3DSA:3.40.50.150 39 215 1.8E-28 T 12-10-2018 AMJ96_CH03036 6a11b06f223854129d7bd268a435fd8c 223 Pfam PF13649 Methyltransferase domain 57 153 6.9E-15 T 12-10-2018 AMJ96_CH03036 6a11b06f223854129d7bd268a435fd8c 223 SUPERFAMILY SSF53335 15 195 7.89E-31 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH01100 b71a0fee4bb4e19295c9b5f2525e674a 110 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 1.1E-8 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH01100 b71a0fee4bb4e19295c9b5f2525e674a 110 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 9 24 1.1E-8 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH01100 b71a0fee4bb4e19295c9b5f2525e674a 110 Gene3D G3DSA:1.10.10.10 2 107 1.8E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01100 b71a0fee4bb4e19295c9b5f2525e674a 110 Pfam PF12840 Helix-turn-helix domain 6 63 3.7E-17 T 12-10-2018 AMJ96_CH01100 b71a0fee4bb4e19295c9b5f2525e674a 110 SMART SM00418 7 85 4.7E-17 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH01100 b71a0fee4bb4e19295c9b5f2525e674a 110 SUPERFAMILY SSF46785 2 100 3.81E-28 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01473 b537f703834cbc26091a858451568965 159 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 27 106 1.1E-17 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMJ96_CH01473 b537f703834cbc26091a858451568965 159 Gene3D G3DSA:2.170.150.70 5 110 1.5E-13 T 12-10-2018 AMJ96_CH01473 b537f703834cbc26091a858451568965 159 SUPERFAMILY SSF51316 1 127 5.34E-42 T 12-10-2018 IPR011057 Mss4-like superfamily AMJ96_CH04056 9cea9fa321c891e433d966761133b00c 256 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 173 256 1.9E-27 T 12-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AMJ96_CH04056 9cea9fa321c891e433d966761133b00c 256 Gene3D G3DSA:3.60.15.10 4 256 1.3E-83 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH04056 9cea9fa321c891e433d966761133b00c 256 Pfam PF00753 Metallo-beta-lactamase superfamily 32 172 5.1E-19 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH04056 9cea9fa321c891e433d966761133b00c 256 PIRSF PIRSF005457 1 256 1.1E-100 T 12-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AMJ96_CH04056 9cea9fa321c891e433d966761133b00c 256 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 4 256 40.916 T 12-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AMJ96_CH04056 9cea9fa321c891e433d966761133b00c 256 SUPERFAMILY SSF56281 8 256 3.92E-69 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH04056 9cea9fa321c891e433d966761133b00c 256 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 10 256 1.3E-93 T 12-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AMJ96_CH04056 9cea9fa321c891e433d966761133b00c 256 SMART SM00849 14 172 3.6E-32 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH03126 bd6d237a051f95080c2d0bfadffabc86 414 SUPERFAMILY SSF103473 4 400 1.44E-66 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH03126 bd6d237a051f95080c2d0bfadffabc86 414 Pfam PF07690 Major Facilitator Superfamily 14 359 1.7E-47 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH03126 bd6d237a051f95080c2d0bfadffabc86 414 ProSitePatterns PS00216 Sugar transport proteins signature 1. 69 85 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMJ96_CH03126 bd6d237a051f95080c2d0bfadffabc86 414 PRINTS PR01035 Tetracycline resistance protein signature 109 130 5.7E-62 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH03126 bd6d237a051f95080c2d0bfadffabc86 414 PRINTS PR01035 Tetracycline resistance protein signature 343 366 5.7E-62 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH03126 bd6d237a051f95080c2d0bfadffabc86 414 PRINTS PR01035 Tetracycline resistance protein signature 167 187 5.7E-62 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH03126 bd6d237a051f95080c2d0bfadffabc86 414 PRINTS PR01035 Tetracycline resistance protein signature 308 328 5.7E-62 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH03126 bd6d237a051f95080c2d0bfadffabc86 414 PRINTS PR01035 Tetracycline resistance protein signature 82 106 5.7E-62 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH03126 bd6d237a051f95080c2d0bfadffabc86 414 PRINTS PR01035 Tetracycline resistance protein signature 255 275 5.7E-62 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH03126 bd6d237a051f95080c2d0bfadffabc86 414 PRINTS PR01035 Tetracycline resistance protein signature 139 161 5.7E-62 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH03126 bd6d237a051f95080c2d0bfadffabc86 414 PRINTS PR01035 Tetracycline resistance protein signature 283 304 5.7E-62 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH03126 bd6d237a051f95080c2d0bfadffabc86 414 PRINTS PR01035 Tetracycline resistance protein signature 20 36 5.7E-62 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH03126 bd6d237a051f95080c2d0bfadffabc86 414 Gene3D G3DSA:1.20.1250.20 5 399 3.0E-73 T 12-10-2018 AMJ96_CH03332 53e5ddf9a3a4a9f79b7f839a25ca6dcc 260 Gene3D G3DSA:3.40.50.300 1 243 4.6E-60 T 12-10-2018 AMJ96_CH03332 53e5ddf9a3a4a9f79b7f839a25ca6dcc 260 SMART SM00382 33 223 6.5E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03332 53e5ddf9a3a4a9f79b7f839a25ca6dcc 260 SUPERFAMILY SSF52540 7 236 1.97E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03332 53e5ddf9a3a4a9f79b7f839a25ca6dcc 260 Pfam PF00005 ABC transporter 25 175 4.5E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00262 42ef467674aa2103571c045f71007a65 882 TIGRFAM TIGR02776 NHEJ_ligase_prk: DNA ligase D 261 860 1.9E-216 T 12-10-2018 IPR014143 DNA ligase D AMJ96_PC00262 42ef467674aa2103571c045f71007a65 882 Gene3D G3DSA:2.40.50.140 436 550 2.8E-29 T 12-10-2018 AMJ96_PC00262 42ef467674aa2103571c045f71007a65 882 SUPERFAMILY SSF56091 242 433 1.1E-49 T 12-10-2018 AMJ96_PC00262 42ef467674aa2103571c045f71007a65 882 Gene3D G3DSA:3.30.1490.70 263 430 1.5E-45 T 12-10-2018 AMJ96_PC00262 42ef467674aa2103571c045f71007a65 882 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 252 548 7.1E-102 T 12-10-2018 IPR014146 DNA ligase D, ligase domain AMJ96_PC00262 42ef467674aa2103571c045f71007a65 882 Gene3D G3DSA:3.30.470.30 275 389 1.5E-45 T 12-10-2018 AMJ96_PC00262 42ef467674aa2103571c045f71007a65 882 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 584 834 1.4E-91 T 12-10-2018 IPR014145 DNA ligase D, polymerase domain AMJ96_PC00262 42ef467674aa2103571c045f71007a65 882 Pfam PF04679 ATP dependent DNA ligase C terminal region 448 542 2.9E-22 T 12-10-2018 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 AMJ96_PC00262 42ef467674aa2103571c045f71007a65 882 Pfam PF13298 DNA polymerase Ligase (LigD) 38 144 7.0E-39 T 12-10-2018 IPR014144 DNA ligase D, 3'-phosphoesterase domain AMJ96_PC00262 42ef467674aa2103571c045f71007a65 882 TIGRFAM TIGR02777 LigD_PE_dom: DNA ligase D, 3'-phosphoesterase domain 6 166 1.1E-71 T 12-10-2018 IPR014144 DNA ligase D, 3'-phosphoesterase domain AMJ96_PC00262 42ef467674aa2103571c045f71007a65 882 Gene3D G3DSA:3.90.920.30 598 877 6.2E-95 T 12-10-2018 AMJ96_PC00262 42ef467674aa2103571c045f71007a65 882 Pfam PF01068 ATP dependent DNA ligase domain 263 432 9.1E-25 T 12-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 AMJ96_PC00262 42ef467674aa2103571c045f71007a65 882 SUPERFAMILY SSF50249 439 548 1.31E-21 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH02678 951d1ecfce35d82cd7300dda94e009ad 75 Pfam PF01527 Transposase 2 58 3.0E-15 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMJ96_CH02678 951d1ecfce35d82cd7300dda94e009ad 75 SUPERFAMILY SSF46689 5 56 1.09E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH00511 88c850281d776482632933248b90fc56 329 Gene3D G3DSA:3.40.50.2300 138 314 2.1E-106 T 12-10-2018 AMJ96_CH00511 88c850281d776482632933248b90fc56 329 SUPERFAMILY SSF53822 34 324 5.62E-67 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH00511 88c850281d776482632933248b90fc56 329 Pfam PF13407 Periplasmic binding protein domain 37 298 9.0E-52 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_CH00511 88c850281d776482632933248b90fc56 329 Gene3D G3DSA:3.40.50.2300 43 306 2.1E-106 T 12-10-2018 AMJ96_CH00986 70d154c3b805a9af65b13e851eb76927 356 SUPERFAMILY SSF55486 191 265 2.05E-5 T 12-10-2018 AMJ96_CH00986 70d154c3b805a9af65b13e851eb76927 356 PIRSF PIRSF012641 1 356 2.8E-159 T 12-10-2018 IPR031321 Uncharacterised conserved protein UCP012641, putative zinc-binding metallo-peptidase AMJ96_CH00986 70d154c3b805a9af65b13e851eb76927 356 Pfam PF15887 Putative zinc-binding metallo-peptidase 100 347 1.7E-104 T 12-10-2018 IPR031321 Uncharacterised conserved protein UCP012641, putative zinc-binding metallo-peptidase AMJ96_CH00986 70d154c3b805a9af65b13e851eb76927 356 Pfam PF10005 zinc-ribbon domain 3 93 1.6E-30 T 12-10-2018 IPR011201 Zinc-ribbon domain, bacteria AMJ96_CH03517 e9661be9fbdec7f6cf9b3e9688f96866 180 PIRSF PIRSF036402 1 179 4.5E-41 T 12-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 AMJ96_CH03517 e9661be9fbdec7f6cf9b3e9688f96866 180 Pfam PF05194 UreE urease accessory protein, C-terminal domain 74 171 5.9E-18 T 12-10-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0016151|GO:0019627|GO:0065003 AMJ96_CH03517 e9661be9fbdec7f6cf9b3e9688f96866 180 Gene3D G3DSA:3.30.70.790 74 145 1.8E-24 T 12-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 AMJ96_CH03517 e9661be9fbdec7f6cf9b3e9688f96866 180 SMART SM00988 3 67 3.3E-14 T 12-10-2018 IPR004029 UreE urease accessory, N-terminal AMJ96_CH03517 e9661be9fbdec7f6cf9b3e9688f96866 180 Gene3D G3DSA:2.60.260.20 1 73 2.7E-11 T 12-10-2018 AMJ96_CH03517 e9661be9fbdec7f6cf9b3e9688f96866 180 SUPERFAMILY SSF69287 1 73 3.53E-14 T 12-10-2018 IPR036118 UreE urease accessory, N-terminal domain superfamily AMJ96_CH03517 e9661be9fbdec7f6cf9b3e9688f96866 180 Pfam PF02814 UreE urease accessory protein, N-terminal domain 10 67 8.6E-14 T 12-10-2018 IPR004029 UreE urease accessory, N-terminal AMJ96_CH03517 e9661be9fbdec7f6cf9b3e9688f96866 180 Hamap MF_00822 Urease accessory protein UreE [ureE]. 2 141 20.421 T 12-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 AMJ96_CH03517 e9661be9fbdec7f6cf9b3e9688f96866 180 SUPERFAMILY SSF69737 73 140 8.89E-20 T 12-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 AMJ96_CH01441 5f17538ed1865f923019e191df6acca2 214 Pfam PF01966 HD domain 32 133 6.4E-11 T 12-10-2018 IPR006674 HD domain AMJ96_CH01441 5f17538ed1865f923019e191df6acca2 214 SMART SM00471 26 143 1.9E-6 T 12-10-2018 IPR003607 HD/PDEase domain AMJ96_CH01441 5f17538ed1865f923019e191df6acca2 214 Gene3D G3DSA:1.10.3210.50 8 214 2.5E-68 T 12-10-2018 AMJ96_CH01441 5f17538ed1865f923019e191df6acca2 214 SUPERFAMILY SSF109604 13 214 3.14E-59 T 12-10-2018 AMJ96_PB00256 a17ec1f97c65e4bbe6d90a708cb2f40e 1201 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 17 1199 0.0 T 12-10-2018 IPR017731 Type VI secretion system, IcmF AMJ96_PB00256 a17ec1f97c65e4bbe6d90a708cb2f40e 1201 SUPERFAMILY SSF52540 151 307 3.09E-9 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PB00256 a17ec1f97c65e4bbe6d90a708cb2f40e 1201 Pfam PF06761 Intracellular multiplication and human macrophage-killing 527 825 3.4E-67 T 12-10-2018 IPR009612 ImcF-related AMJ96_PB00256 a17ec1f97c65e4bbe6d90a708cb2f40e 1201 Pfam PF14331 ImcF-related N-terminal domain 216 473 3.1E-85 T 12-10-2018 IPR025743 ImcF-related, N-terminal domain AMJ96_PB00256 a17ec1f97c65e4bbe6d90a708cb2f40e 1201 Pfam PF06744 Type VI secretion protein IcmF C-terminal 951 1149 3.6E-46 T 12-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal AMJ96_CH03051 2a3d633d1c4fb51253525979dbb93339 112 TIGRFAM TIGR01244 TIGR01244: TIGR01244 family protein 2 104 2.7E-27 T 12-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 AMJ96_CH03051 2a3d633d1c4fb51253525979dbb93339 112 SUPERFAMILY SSF52799 2 102 2.26E-7 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMJ96_CH03051 2a3d633d1c4fb51253525979dbb93339 112 Pfam PF04273 Putative phosphatase (DUF442) 2 105 1.5E-29 T 12-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 AMJ96_CH03051 2a3d633d1c4fb51253525979dbb93339 112 Gene3D G3DSA:3.90.190.10 1 110 1.5E-34 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMJ96_CH03851 c0da9a4106197e6fe594ccfa7845cb3e 417 TIGRFAM TIGR01373 soxB: sarcosine oxidase, beta subunit family 3 409 2.3E-215 T 12-10-2018 IPR006278 Sarcosine oxidase subunit beta GO:0008115|GO:0046653|GO:0055114 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 AMJ96_CH03851 c0da9a4106197e6fe594ccfa7845cb3e 417 SUPERFAMILY SSF54373 263 340 5.89E-6 T 12-10-2018 AMJ96_CH03851 c0da9a4106197e6fe594ccfa7845cb3e 417 Gene3D G3DSA:3.30.9.10 115 347 1.2E-103 T 12-10-2018 AMJ96_CH03851 c0da9a4106197e6fe594ccfa7845cb3e 417 SUPERFAMILY SSF51905 32 405 8.05E-51 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03851 c0da9a4106197e6fe594ccfa7845cb3e 417 Gene3D G3DSA:3.50.50.60 34 390 1.2E-103 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03851 c0da9a4106197e6fe594ccfa7845cb3e 417 Pfam PF01266 FAD dependent oxidoreductase 34 383 1.2E-60 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_CH01700 831543a3752a124c830159c8b0f87f57 143 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 142 9.7E-63 T 12-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01700 831543a3752a124c830159c8b0f87f57 143 SUPERFAMILY SSF46906 68 141 1.96E-21 T 12-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily AMJ96_CH01700 831543a3752a124c830159c8b0f87f57 143 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 3.0E-17 T 12-10-2018 AMJ96_CH01700 831543a3752a124c830159c8b0f87f57 143 SMART SM00649 9 142 1.3E-74 T 12-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01700 831543a3752a124c830159c8b0f87f57 143 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 143 29.448 T 12-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01700 831543a3752a124c830159c8b0f87f57 143 SUPERFAMILY SSF54747 3 72 7.72E-30 T 12-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily AMJ96_CH01700 831543a3752a124c830159c8b0f87f57 143 Gene3D G3DSA:3.30.1550.10 2 72 5.6E-35 T 12-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily AMJ96_CH01700 831543a3752a124c830159c8b0f87f57 143 Pfam PF03946 Ribosomal protein L11, N-terminal domain 10 67 1.2E-29 T 12-10-2018 IPR020784 Ribosomal protein L11, N-terminal AMJ96_CH01700 831543a3752a124c830159c8b0f87f57 143 Gene3D G3DSA:1.10.10.2720 73 143 8.6E-23 T 12-10-2018 AMJ96_CH01700 831543a3752a124c830159c8b0f87f57 143 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 141 5.3E-19 T 12-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AMJ96_CH00887 1cbb0461faa24b0b520782f5a71ed1d2 207 Pfam PF00430 ATP synthase B/B' CF(0) 58 187 1.5E-17 T 12-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AMJ96_CH00887 1cbb0461faa24b0b520782f5a71ed1d2 207 Hamap MF_01398 ATP synthase subunit b [atpF]. 49 189 10.978 T 12-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AMJ96_CH04145 dfa771f4e25d3a4eadeba10d1c39dd95 613 Gene3D G3DSA:1.20.58.100 446 559 2.7E-39 T 12-10-2018 AMJ96_CH04145 dfa771f4e25d3a4eadeba10d1c39dd95 613 SUPERFAMILY SSF51905 13 449 9.83E-77 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH04145 dfa771f4e25d3a4eadeba10d1c39dd95 613 SUPERFAMILY SSF56425 250 368 1.64E-41 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH04145 dfa771f4e25d3a4eadeba10d1c39dd95 613 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 55 64 - T 12-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH04145 dfa771f4e25d3a4eadeba10d1c39dd95 613 Gene3D G3DSA:3.50.50.60 21 429 1.5E-164 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH04145 dfa771f4e25d3a4eadeba10d1c39dd95 613 Gene3D G3DSA:3.90.700.10 260 363 1.5E-164 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH04145 dfa771f4e25d3a4eadeba10d1c39dd95 613 Gene3D G3DSA:4.10.80.40 560 613 1.4E-8 T 12-10-2018 AMJ96_CH04145 dfa771f4e25d3a4eadeba10d1c39dd95 613 SUPERFAMILY SSF46977 465 613 3.4E-46 T 12-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH04145 dfa771f4e25d3a4eadeba10d1c39dd95 613 Pfam PF00890 FAD binding domain 21 418 3.3E-126 T 12-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH04145 dfa771f4e25d3a4eadeba10d1c39dd95 613 Pfam PF02910 Fumarate reductase flavoprotein C-term 473 613 7.4E-43 T 12-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH04145 dfa771f4e25d3a4eadeba10d1c39dd95 613 PIRSF PIRSF000171 11 600 1.2E-29 T 12-10-2018 AMJ96_CH04145 dfa771f4e25d3a4eadeba10d1c39dd95 613 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 18 613 4.5E-281 T 12-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH04145 dfa771f4e25d3a4eadeba10d1c39dd95 613 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 21 613 4.7E-233 T 12-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH02138 7ca165c915ca00e48ffe7c9cfc39389f 242 PIRSF PIRSF000851 4 242 3.4E-88 T 12-10-2018 IPR026027 Phosphatidylcholine synthase Pcs KEGG: 00564+2.7.8.24|MetaCyc: PWY-6826 AMJ96_CH02138 7ca165c915ca00e48ffe7c9cfc39389f 242 Gene3D G3DSA:1.20.120.1760 16 182 3.8E-5 T 12-10-2018 AMJ96_CH01831 59ea167720d2b6414c9036e64c75d204 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 183 2.4E-15 T 12-10-2018 AMJ96_CH01831 59ea167720d2b6414c9036e64c75d204 221 Gene3D G3DSA:1.10.150.240 24 84 1.1E-48 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMJ96_CH01831 59ea167720d2b6414c9036e64c75d204 221 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 87 183 9.5E-16 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH01831 59ea167720d2b6414c9036e64c75d204 221 ProSitePatterns PS01228 Hypothetical cof family signature 1. 11 22 - T 12-10-2018 AMJ96_CH01831 59ea167720d2b6414c9036e64c75d204 221 SUPERFAMILY SSF56784 9 204 1.8E-38 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_CH01831 59ea167720d2b6414c9036e64c75d204 221 Gene3D G3DSA:3.40.50.1000 11 190 1.1E-48 T 12-10-2018 IPR023214 HAD superfamily AMJ96_CH03951 50045fb221c53caf7a62f10c0b9f1a56 327 PIRSF PIRSF002816 2 326 2.8E-131 T 12-10-2018 IPR026266 L-arabinose-binding periplasmic protein GO:0042882 AMJ96_CH03951 50045fb221c53caf7a62f10c0b9f1a56 327 Gene3D G3DSA:3.40.50.2300 27 308 5.5E-116 T 12-10-2018 AMJ96_CH03951 50045fb221c53caf7a62f10c0b9f1a56 327 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 27 304 7.1E-41 T 12-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain AMJ96_CH03951 50045fb221c53caf7a62f10c0b9f1a56 327 SUPERFAMILY SSF53822 25 324 2.94E-61 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH03951 50045fb221c53caf7a62f10c0b9f1a56 327 Gene3D G3DSA:3.40.50.2300 132 313 5.5E-116 T 12-10-2018 AMJ96_CH02105 1e157f242826cd18465fba5009638e65 312 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 308 1.1E-6 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02105 1e157f242826cd18465fba5009638e65 312 SUPERFAMILY SSF161098 76 300 5.89E-52 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02105 1e157f242826cd18465fba5009638e65 312 Gene3D G3DSA:1.10.3720.10 72 311 1.8E-59 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PB00402 22bfbe792c97c1b718582cdd21be8616 259 Gene3D G3DSA:2.60.120.620 1 236 2.6E-36 T 12-10-2018 AMJ96_PB00402 22bfbe792c97c1b718582cdd21be8616 259 SUPERFAMILY SSF51197 1 221 1.37E-41 T 12-10-2018 AMJ96_PB00402 22bfbe792c97c1b718582cdd21be8616 259 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 11 211 2.4E-29 T 12-10-2018 IPR008775 Phytanoyl-CoA dioxygenase AMJ96_CH01241 36cf34484cef96dc789c0f81676be2dd 424 Pfam PF07690 Major Facilitator Superfamily 26 250 1.6E-29 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH01241 36cf34484cef96dc789c0f81676be2dd 424 SUPERFAMILY SSF103473 19 406 8.24E-66 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH01241 36cf34484cef96dc789c0f81676be2dd 424 Gene3D G3DSA:1.20.1250.20 223 423 9.3E-27 T 12-10-2018 AMJ96_CH01241 36cf34484cef96dc789c0f81676be2dd 424 PRINTS PR01035 Tetracycline resistance protein signature 353 376 6.2E-11 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH01241 36cf34484cef96dc789c0f81676be2dd 424 PRINTS PR01035 Tetracycline resistance protein signature 31 47 6.2E-11 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH01241 36cf34484cef96dc789c0f81676be2dd 424 PRINTS PR01035 Tetracycline resistance protein signature 93 117 6.2E-11 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH01241 36cf34484cef96dc789c0f81676be2dd 424 PRINTS PR01035 Tetracycline resistance protein signature 120 141 6.2E-11 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH01241 36cf34484cef96dc789c0f81676be2dd 424 PRINTS PR01035 Tetracycline resistance protein signature 150 172 6.2E-11 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH01241 36cf34484cef96dc789c0f81676be2dd 424 Gene3D G3DSA:1.20.1250.20 17 215 3.3E-29 T 12-10-2018 AMJ96_CH04116 eb4e316d0d493dde5def5c4bb9929b4b 245 Pfam PF02397 Bacterial sugar transferase 51 237 1.7E-61 T 12-10-2018 IPR003362 Bacterial sugar transferase AMJ96_CH01946 babbeeaaaec92babc133a424744cbf5b 146 Gene3D G3DSA:3.10.180.10 1 129 4.6E-39 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01946 babbeeaaaec92babc133a424744cbf5b 146 SUPERFAMILY SSF54593 1 131 9.93E-33 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01946 babbeeaaaec92babc133a424744cbf5b 146 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 12-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 AMJ96_CH01946 babbeeaaaec92babc133a424744cbf5b 146 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 124 1.2E-14 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH01946 babbeeaaaec92babc133a424744cbf5b 146 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 129 2.0E-36 T 12-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 AMJ96_CH01257 1aaca46a2c3b1e7d3e0a4c45e6acdc39 164 Gene3D G3DSA:3.40.630.30 11 162 8.5E-33 T 12-10-2018 AMJ96_CH01257 1aaca46a2c3b1e7d3e0a4c45e6acdc39 164 SUPERFAMILY SSF55729 17 153 8.58E-26 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH01257 1aaca46a2c3b1e7d3e0a4c45e6acdc39 164 Pfam PF00583 Acetyltransferase (GNAT) family 64 149 3.2E-11 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH02430 43b9afbbc0a1f5bf75824f18a91cf5e3 559 Pfam PF00795 Carbon-nitrogen hydrolase 12 250 4.8E-24 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AMJ96_CH02430 43b9afbbc0a1f5bf75824f18a91cf5e3 559 SUPERFAMILY SSF52402 270 542 1.4E-75 T 12-10-2018 AMJ96_CH02430 43b9afbbc0a1f5bf75824f18a91cf5e3 559 Gene3D G3DSA:3.60.110.10 8 261 2.0E-77 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMJ96_CH02430 43b9afbbc0a1f5bf75824f18a91cf5e3 559 TIGRFAM TIGR00552 nadE: NAD+ synthetase 284 538 2.2E-63 T 12-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 AMJ96_CH02430 43b9afbbc0a1f5bf75824f18a91cf5e3 559 Gene3D G3DSA:3.40.50.620 274 559 2.2E-113 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH02430 43b9afbbc0a1f5bf75824f18a91cf5e3 559 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 11 558 28.312 T 12-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AMJ96_CH02430 43b9afbbc0a1f5bf75824f18a91cf5e3 559 PIRSF PIRSF006630 8 559 6.6E-183 T 12-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AMJ96_CH02430 43b9afbbc0a1f5bf75824f18a91cf5e3 559 Pfam PF02540 NAD synthase 281 532 3.0E-73 T 12-10-2018 IPR022310 NAD/GMP synthase AMJ96_CH02430 43b9afbbc0a1f5bf75824f18a91cf5e3 559 SUPERFAMILY SSF56317 9 250 3.4E-57 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMJ96_CH01418 f96e72e8fd982b8d2f14468585ff7a8e 410 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 262 377 7.7E-28 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AMJ96_CH01418 f96e72e8fd982b8d2f14468585ff7a8e 410 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 9 214 8.8E-53 T 12-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH01418 f96e72e8fd982b8d2f14468585ff7a8e 410 SMART SM00833 262 377 1.2E-50 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AMJ96_CH01418 f96e72e8fd982b8d2f14468585ff7a8e 410 SUPERFAMILY SSF52540 4 324 8.6E-37 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01418 f96e72e8fd982b8d2f14468585ff7a8e 410 Gene3D G3DSA:3.40.50.300 5 233 1.1E-67 T 12-10-2018 AMJ96_PC00087 f02bb65aba9fe2916f958f084f7f54bf 420 SUPERFAMILY SSF51556 79 379 7.09E-84 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_PC00087 f02bb65aba9fe2916f958f084f7f54bf 420 Pfam PF01979 Amidohydrolase family 76 397 5.4E-20 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMJ96_PC00087 f02bb65aba9fe2916f958f084f7f54bf 420 Hamap MF_00372 Imidazolonepropionase [hutI]. 17 418 41.258 T 12-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_PC00087 f02bb65aba9fe2916f958f084f7f54bf 420 Gene3D G3DSA:2.30.40.10 22 415 2.4E-160 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_PC00087 f02bb65aba9fe2916f958f084f7f54bf 420 Gene3D G3DSA:3.20.20.140 80 378 2.4E-160 T 12-10-2018 AMJ96_PC00087 f02bb65aba9fe2916f958f084f7f54bf 420 TIGRFAM TIGR01224 hutI: imidazolonepropionase 38 416 7.5E-131 T 12-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_PC00087 f02bb65aba9fe2916f958f084f7f54bf 420 SUPERFAMILY SSF51338 18 417 6.84E-31 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH03295 d3f52c4f38b2f7bb5df07c7242b87a65 166 Gene3D G3DSA:2.60.120.480 3 165 1.1E-50 T 12-10-2018 IPR024060 Ureidoglycolate lyase domain superfamily GO:0004848 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 AMJ96_CH03295 d3f52c4f38b2f7bb5df07c7242b87a65 166 Pfam PF04115 Ureidoglycolate lyase 4 161 4.2E-50 T 12-10-2018 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 AMJ96_CH03295 d3f52c4f38b2f7bb5df07c7242b87a65 166 PIRSF PIRSF017306 4 156 8.8E-34 T 12-10-2018 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 AMJ96_CH03295 d3f52c4f38b2f7bb5df07c7242b87a65 166 SUPERFAMILY SSF51182 5 161 5.78E-53 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH03295 d3f52c4f38b2f7bb5df07c7242b87a65 166 Hamap MF_00616 Ureidoglycolate lyase [allA]. 3 163 42.811 T 12-10-2018 IPR023525 Ureidoglycolate lyase, bacterial GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 AMJ96_CH03415 c74bbae11e2056d8525a0c0566c1f3dd 383 Gene3D G3DSA:3.40.50.2000 31 178 5.1E-53 T 12-10-2018 AMJ96_CH03415 c74bbae11e2056d8525a0c0566c1f3dd 383 Pfam PF00534 Glycosyl transferases group 1 184 350 1.8E-28 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 AMJ96_CH03415 c74bbae11e2056d8525a0c0566c1f3dd 383 SUPERFAMILY SSF53756 65 375 6.57E-64 T 12-10-2018 AMJ96_CH03415 c74bbae11e2056d8525a0c0566c1f3dd 383 Pfam PF13439 Glycosyltransferase Family 4 73 181 1.6E-11 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMJ96_CH03415 c74bbae11e2056d8525a0c0566c1f3dd 383 Gene3D G3DSA:3.40.50.2000 179 358 5.1E-53 T 12-10-2018 AMJ96_CH01663 5056ff5febf72aaac49de66d4df59413 102 Pfam PF12096 Protein of unknown function (DUF3572) 14 93 8.1E-31 T 12-10-2018 IPR021955 Protein of unknown function DUF3572 AMJ96_CH01334 9e7b1e7712d65f967dcf60e0ca29c838 251 Gene3D G3DSA:3.40.50.2300 15 148 2.9E-34 T 12-10-2018 AMJ96_CH01334 9e7b1e7712d65f967dcf60e0ca29c838 251 SUPERFAMILY SSF52172 26 206 7.58E-34 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH01334 9e7b1e7712d65f967dcf60e0ca29c838 251 SMART SM00448 27 138 5.4E-34 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01334 9e7b1e7712d65f967dcf60e0ca29c838 251 Pfam PF00072 Response regulator receiver domain 29 138 6.7E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01334 9e7b1e7712d65f967dcf60e0ca29c838 251 Gene3D G3DSA:1.10.10.10 150 251 1.2E-35 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01334 9e7b1e7712d65f967dcf60e0ca29c838 251 SMART SM00862 172 247 2.4E-30 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH01334 9e7b1e7712d65f967dcf60e0ca29c838 251 Pfam PF00486 Transcriptional regulatory protein, C terminal 172 247 2.4E-28 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH00367 bbb2951b11e6affdb56d861524439847 524 SUPERFAMILY SSF56112 96 435 1.63E-38 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily AMJ96_CH00367 bbb2951b11e6affdb56d861524439847 524 Pfam PF03109 ABC1 family 114 233 2.3E-29 T 12-10-2018 IPR004147 UbiB domain AMJ96_CH00367 bbb2951b11e6affdb56d861524439847 524 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 7 444 3.8E-174 T 12-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 AMJ96_CH03021 1aee4acdb64019387f906c2a602afa72 585 SUPERFAMILY SSF56601 235 570 2.29E-78 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMJ96_CH03021 1aee4acdb64019387f906c2a602afa72 585 Gene3D G3DSA:3.90.1310.30 84 215 7.0E-31 T 12-10-2018 AMJ96_CH03021 1aee4acdb64019387f906c2a602afa72 585 SUPERFAMILY SSF56519 86 213 8.63E-33 T 12-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 AMJ96_CH03021 1aee4acdb64019387f906c2a602afa72 585 Gene3D G3DSA:3.30.450.330 237 561 1.9E-82 T 12-10-2018 AMJ96_CH03021 1aee4acdb64019387f906c2a602afa72 585 Pfam PF03717 Penicillin-binding Protein dimerisation domain 88 197 1.3E-14 T 12-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AMJ96_CH03021 1aee4acdb64019387f906c2a602afa72 585 Pfam PF00905 Penicillin binding protein transpeptidase domain 262 560 2.5E-55 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMJ96_CH03021 1aee4acdb64019387f906c2a602afa72 585 Gene3D G3DSA:3.40.710.10 296 479 1.9E-82 T 12-10-2018 AMJ96_CH02554 a70d607c12e0bffeab0a0163c72c98c0 139 SUPERFAMILY SSF159664 10 134 7.59E-34 T 12-10-2018 IPR036518 CobE/GbiG C-terminal domain superfamily GO:0009236 AMJ96_CH02554 a70d607c12e0bffeab0a0163c72c98c0 139 Pfam PF01890 Cobalamin synthesis G C-terminus 13 132 6.1E-26 T 12-10-2018 IPR002750 CobE/GbiG C-terminal domain GO:0009236 AMJ96_CH02554 a70d607c12e0bffeab0a0163c72c98c0 139 Gene3D G3DSA:3.30.420.180 3 138 4.1E-37 T 12-10-2018 IPR036518 CobE/GbiG C-terminal domain superfamily GO:0009236 AMJ96_CH00948 c7e6c200cda498ec09c0c6f600971315 379 Pfam PF01757 Acyltransferase family 12 344 2.7E-23 T 12-10-2018 IPR002656 Acyltransferase 3 GO:0016747 AMJ96_CH00036 89cc9f701d227449df161f03ebb73355 251 Gene3D G3DSA:3.40.50.2300 7 137 4.3E-36 T 12-10-2018 AMJ96_CH00036 89cc9f701d227449df161f03ebb73355 251 SUPERFAMILY SSF46894 153 248 9.64E-27 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH00036 89cc9f701d227449df161f03ebb73355 251 Pfam PF00486 Transcriptional regulatory protein, C terminal 171 247 9.0E-22 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH00036 89cc9f701d227449df161f03ebb73355 251 Gene3D G3DSA:1.10.10.10 141 251 2.8E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00036 89cc9f701d227449df161f03ebb73355 251 Pfam PF00072 Response regulator receiver domain 10 119 9.2E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00036 89cc9f701d227449df161f03ebb73355 251 SUPERFAMILY SSF52172 5 129 5.55E-39 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH00036 89cc9f701d227449df161f03ebb73355 251 SMART SM00862 171 247 4.6E-20 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH00036 89cc9f701d227449df161f03ebb73355 251 SMART SM00448 8 118 2.8E-37 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PA00057 d8fe99016778c102fbfe4b872bc6715e 445 SMART SM00812 9 376 6.8E-100 T 12-10-2018 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 AMJ96_PA00057 d8fe99016778c102fbfe4b872bc6715e 445 Gene3D G3DSA:2.60.40.1180 338 400 5.9E-116 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta AMJ96_PA00057 d8fe99016778c102fbfe4b872bc6715e 445 PIRSF PIRSF001092 4 436 1.1E-113 T 12-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 AMJ96_PA00057 d8fe99016778c102fbfe4b872bc6715e 445 SUPERFAMILY SSF51445 11 336 3.88E-97 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_PA00057 d8fe99016778c102fbfe4b872bc6715e 445 Pfam PF01120 Alpha-L-fucosidase 13 332 1.1E-87 T 12-10-2018 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 AMJ96_PA00057 d8fe99016778c102fbfe4b872bc6715e 445 PRINTS PR00741 Glycosyl hydrolase family 29 signature 81 97 7.8E-13 T 12-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 AMJ96_PA00057 d8fe99016778c102fbfe4b872bc6715e 445 PRINTS PR00741 Glycosyl hydrolase family 29 signature 287 308 7.8E-13 T 12-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 AMJ96_PA00057 d8fe99016778c102fbfe4b872bc6715e 445 Gene3D G3DSA:3.20.20.80 18 337 5.9E-116 T 12-10-2018 AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 SUPERFAMILY SSF55681 245 545 1.24E-87 T 12-10-2018 AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 172 221 2.5E-12 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 PRINTS PR01047 Threonyl-tRNA synthetase signature 483 511 1.4E-53 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 PRINTS PR01047 Threonyl-tRNA synthetase signature 375 398 1.4E-53 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 PRINTS PR01047 Threonyl-tRNA synthetase signature 526 539 1.4E-53 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 PRINTS PR01047 Threonyl-tRNA synthetase signature 342 370 1.4E-53 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 PRINTS PR01047 Threonyl-tRNA synthetase signature 553 565 1.4E-53 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 SMART SM00863 171 221 4.5E-22 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 336 547 4.7E-41 T 12-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 Pfam PF02824 TGS domain 8 62 5.8E-6 T 12-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 Gene3D G3DSA:3.30.930.10 225 550 2.9E-118 T 12-10-2018 AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 Pfam PF03129 Anticodon binding domain 560 646 3.9E-18 T 12-10-2018 IPR004154 Anticodon-binding AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 SUPERFAMILY SSF52954 546 647 1.12E-27 T 12-10-2018 AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 Gene3D G3DSA:3.40.50.800 551 664 2.1E-25 T 12-10-2018 IPR036621 Anticodon-binding domain superfamily AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 Gene3D G3DSA:3.30.54.20 132 188 6.0E-64 T 12-10-2018 AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 SUPERFAMILY SSF81271 6 63 2.42E-11 T 12-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 SUPERFAMILY SSF55186 65 243 8.37E-64 T 12-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 68 653 32.134 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 Gene3D G3DSA:3.10.20.30 2 64 1.3E-18 T 12-10-2018 IPR012675 Beta-grasp domain superfamily AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 74 648 8.4E-205 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AMJ96_CH02256 ad4d162d899c1b767ead8c24a573ce48 668 Gene3D G3DSA:3.30.980.10 71 224 6.0E-64 T 12-10-2018 AMJ96_PC00389 845739db4b60277d86b24c52925ba067 401 Gene3D G3DSA:3.40.190.10 15 400 2.3E-79 T 12-10-2018 AMJ96_PC00389 845739db4b60277d86b24c52925ba067 401 SUPERFAMILY SSF53850 25 398 5.93E-80 T 12-10-2018 AMJ96_PC00389 845739db4b60277d86b24c52925ba067 401 Pfam PF13416 Bacterial extracellular solute-binding protein 38 344 8.7E-45 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PD00652 0cf55176c2b223ce991b433002853095 227 SMART SM00862 149 224 3.8E-22 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_PD00652 0cf55176c2b223ce991b433002853095 227 Gene3D G3DSA:3.40.50.2300 3 117 3.1E-7 T 12-10-2018 AMJ96_PD00652 0cf55176c2b223ce991b433002853095 227 SUPERFAMILY SSF52172 4 165 8.11E-9 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PD00652 0cf55176c2b223ce991b433002853095 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 223 1.9E-21 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_PD00652 0cf55176c2b223ce991b433002853095 227 Gene3D G3DSA:1.10.10.10 123 225 5.1E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00652 0cf55176c2b223ce991b433002853095 227 SUPERFAMILY SSF46894 133 224 5.67E-24 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH00126 b65e14865280e9325f27812473880869 412 SUPERFAMILY SSF53955 20 340 3.0E-86 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily AMJ96_CH00126 b65e14865280e9325f27812473880869 412 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 30 338 2.3E-106 T 12-10-2018 IPR011970 Lytic murein transglycosylase AMJ96_CH00126 b65e14865280e9325f27812473880869 412 SUPERFAMILY SSF47090 355 406 9.42E-8 T 12-10-2018 IPR036365 PGBD-like superfamily AMJ96_CH00126 b65e14865280e9325f27812473880869 412 Gene3D G3DSA:1.10.8.350 81 217 7.6E-70 T 12-10-2018 AMJ96_CH00126 b65e14865280e9325f27812473880869 412 Pfam PF13406 Transglycosylase SLT domain 30 335 9.5E-96 T 12-10-2018 IPR031304 Transglycosylase SLT domain 2 AMJ96_CH00126 b65e14865280e9325f27812473880869 412 Pfam PF01471 Putative peptidoglycan binding domain 357 400 3.1E-6 T 12-10-2018 IPR002477 Peptidoglycan binding-like AMJ96_CH00126 b65e14865280e9325f27812473880869 412 Gene3D G3DSA:1.10.530.10 85 334 7.6E-70 T 12-10-2018 AMJ96_CH00126 b65e14865280e9325f27812473880869 412 Gene3D G3DSA:1.10.101.10 352 404 1.4E-5 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMJ96_CH01852 04f3fd1d18c6255a40539c7e541bbe77 105 Pfam PF09656 Putative transmembrane protein (PGPGW) 45 93 2.7E-5 T 12-10-2018 IPR019099 Uncharacterised protein family PGPGW, transmembrane AMJ96_PD00412 dcdb9faa227f5450b5d05e74c9a5ea4c 336 Gene3D G3DSA:1.10.10.60 230 333 7.9E-22 T 12-10-2018 AMJ96_PD00412 dcdb9faa227f5450b5d05e74c9a5ea4c 336 Pfam PF12833 Helix-turn-helix domain 252 330 3.0E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PD00412 dcdb9faa227f5450b5d05e74c9a5ea4c 336 SUPERFAMILY SSF52317 12 211 5.86E-37 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_PD00412 dcdb9faa227f5450b5d05e74c9a5ea4c 336 SUPERFAMILY SSF46689 282 331 1.57E-6 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00412 dcdb9faa227f5450b5d05e74c9a5ea4c 336 SMART SM00342 246 329 4.9E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PD00412 dcdb9faa227f5450b5d05e74c9a5ea4c 336 SUPERFAMILY SSF46689 229 280 7.62E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00412 dcdb9faa227f5450b5d05e74c9a5ea4c 336 Gene3D G3DSA:3.40.50.880 9 217 2.4E-49 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_PD00412 dcdb9faa227f5450b5d05e74c9a5ea4c 336 Pfam PF01965 DJ-1/PfpI family 12 190 1.9E-16 T 12-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 AMJ96_CH01021 231b4d44607c78e6c1d5cb6d3aa2d955 216 Pfam PF13410 Glutathione S-transferase, C-terminal domain 130 192 5.0E-6 T 12-10-2018 AMJ96_CH01021 231b4d44607c78e6c1d5cb6d3aa2d955 216 SUPERFAMILY SSF52833 20 84 5.49E-18 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH01021 231b4d44607c78e6c1d5cb6d3aa2d955 216 SUPERFAMILY SSF47616 82 205 5.29E-22 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMJ96_CH01021 231b4d44607c78e6c1d5cb6d3aa2d955 216 Gene3D G3DSA:3.40.30.10 2 87 4.1E-38 T 12-10-2018 AMJ96_CH01021 231b4d44607c78e6c1d5cb6d3aa2d955 216 Pfam PF02798 Glutathione S-transferase, N-terminal domain 16 81 2.6E-13 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMJ96_CH01021 231b4d44607c78e6c1d5cb6d3aa2d955 216 Gene3D G3DSA:1.20.1050.10 88 204 5.5E-41 T 12-10-2018 AMJ96_CH02757 505eed7efce3d13038a9acc34d7dfb54 273 SUPERFAMILY SSF51215 19 156 4.84E-15 T 12-10-2018 IPR037923 Transcription regulator HTH-like AMJ96_CH02757 505eed7efce3d13038a9acc34d7dfb54 273 Pfam PF12833 Helix-turn-helix domain 190 268 4.9E-21 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH02757 505eed7efce3d13038a9acc34d7dfb54 273 SUPERFAMILY SSF46689 174 218 7.62E-5 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02757 505eed7efce3d13038a9acc34d7dfb54 273 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 221 263 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_CH02757 505eed7efce3d13038a9acc34d7dfb54 273 Pfam PF02311 AraC-like ligand binding domain 26 138 1.3E-12 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMJ96_CH02757 505eed7efce3d13038a9acc34d7dfb54 273 SUPERFAMILY SSF46689 221 269 4.03E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02757 505eed7efce3d13038a9acc34d7dfb54 273 SMART SM00342 184 267 4.9E-31 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH02757 505eed7efce3d13038a9acc34d7dfb54 273 Gene3D G3DSA:1.10.10.2730 227 271 4.7E-14 T 12-10-2018 AMJ96_CH02757 505eed7efce3d13038a9acc34d7dfb54 273 Gene3D G3DSA:1.10.10.60 173 226 6.7E-11 T 12-10-2018 AMJ96_CH01015 21723f8f66e9e873b63996a9aafc45ea 367 SUPERFAMILY SSF55811 230 357 5.14E-25 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_CH01015 21723f8f66e9e873b63996a9aafc45ea 367 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 48 166 2.6E-17 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMJ96_CH01015 21723f8f66e9e873b63996a9aafc45ea 367 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 12 277 2.2E-95 T 12-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 AMJ96_CH01015 21723f8f66e9e873b63996a9aafc45ea 367 SMART SM00478 51 200 3.5E-45 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMJ96_CH01015 21723f8f66e9e873b63996a9aafc45ea 367 Pfam PF00633 Helix-hairpin-helix motif 111 140 1.3E-7 T 12-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 AMJ96_CH01015 21723f8f66e9e873b63996a9aafc45ea 367 Gene3D G3DSA:1.10.1670.10 14 222 4.4E-84 T 12-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 AMJ96_CH01015 21723f8f66e9e873b63996a9aafc45ea 367 Gene3D G3DSA:3.90.79.10 235 358 1.8E-14 T 12-10-2018 AMJ96_CH01015 21723f8f66e9e873b63996a9aafc45ea 367 ProSitePatterns PS01155 Endonuclease III family signature. 114 143 - T 12-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 AMJ96_CH01015 21723f8f66e9e873b63996a9aafc45ea 367 SUPERFAMILY SSF48150 12 232 5.02E-70 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AMJ96_CH01015 21723f8f66e9e873b63996a9aafc45ea 367 Gene3D G3DSA:1.10.340.30 24 144 4.4E-84 T 12-10-2018 AMJ96_CH01015 21723f8f66e9e873b63996a9aafc45ea 367 Pfam PF14815 NUDIX domain 246 355 3.7E-21 T 12-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AMJ96_CH01015 21723f8f66e9e873b63996a9aafc45ea 367 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 202 218 - T 12-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AMJ96_PD00270 a51ce3e8e8c29a0c3da3f35f76b580b1 261 SMART SM00062 36 256 4.9E-42 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PD00270 a51ce3e8e8c29a0c3da3f35f76b580b1 261 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 254 1.5E-50 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PD00270 a51ce3e8e8c29a0c3da3f35f76b580b1 261 Gene3D G3DSA:3.40.190.10 123 214 2.2E-54 T 12-10-2018 AMJ96_PD00270 a51ce3e8e8c29a0c3da3f35f76b580b1 261 SUPERFAMILY SSF53850 28 258 6.47E-55 T 12-10-2018 AMJ96_PD00270 a51ce3e8e8c29a0c3da3f35f76b580b1 261 Gene3D G3DSA:3.40.190.10 31 248 2.2E-54 T 12-10-2018 AMJ96_PD00270 a51ce3e8e8c29a0c3da3f35f76b580b1 261 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 59 72 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site AMJ96_CH01868 e6b6f3dfd1ca56fec37df4be84b71f46 585 Pfam PF00750 tRNA synthetases class I (R) 313 424 1.2E-6 T 12-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 AMJ96_CH01868 e6b6f3dfd1ca56fec37df4be84b71f46 585 Pfam PF00750 tRNA synthetases class I (R) 116 180 1.2E-11 T 12-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 AMJ96_CH01868 e6b6f3dfd1ca56fec37df4be84b71f46 585 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 8 94 8.9E-21 T 12-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMJ96_CH01868 e6b6f3dfd1ca56fec37df4be84b71f46 585 SUPERFAMILY SSF55190 28 107 1.23E-20 T 12-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 AMJ96_CH01868 e6b6f3dfd1ca56fec37df4be84b71f46 585 Pfam PF05746 DALR anticodon binding domain 454 584 9.5E-32 T 12-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMJ96_CH01868 e6b6f3dfd1ca56fec37df4be84b71f46 585 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 16 584 6.4E-109 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMJ96_CH01868 e6b6f3dfd1ca56fec37df4be84b71f46 585 SUPERFAMILY SSF52374 118 465 1.47E-84 T 12-10-2018 AMJ96_CH01868 e6b6f3dfd1ca56fec37df4be84b71f46 585 Gene3D G3DSA:3.30.1360.70 2 109 1.0E-21 T 12-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 AMJ96_CH01868 e6b6f3dfd1ca56fec37df4be84b71f46 585 PRINTS PR01038 Arginyl-tRNA synthetase signature 323 344 4.5E-24 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMJ96_CH01868 e6b6f3dfd1ca56fec37df4be84b71f46 585 PRINTS PR01038 Arginyl-tRNA synthetase signature 138 154 4.5E-24 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMJ96_CH01868 e6b6f3dfd1ca56fec37df4be84b71f46 585 PRINTS PR01038 Arginyl-tRNA synthetase signature 123 138 4.5E-24 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMJ96_CH01868 e6b6f3dfd1ca56fec37df4be84b71f46 585 PRINTS PR01038 Arginyl-tRNA synthetase signature 162 175 4.5E-24 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMJ96_CH01868 e6b6f3dfd1ca56fec37df4be84b71f46 585 Hamap MF_00123 Arginine--tRNA ligase [argS]. 5 584 24.038 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AMJ96_CH01868 e6b6f3dfd1ca56fec37df4be84b71f46 585 SMART SM01016 5 94 7.4E-32 T 12-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMJ96_CH01868 e6b6f3dfd1ca56fec37df4be84b71f46 585 SMART SM00836 454 584 5.6E-52 T 12-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AMJ96_CH01868 e6b6f3dfd1ca56fec37df4be84b71f46 585 Gene3D G3DSA:1.10.730.10 449 584 4.4E-144 T 12-10-2018 AMJ96_CH01868 e6b6f3dfd1ca56fec37df4be84b71f46 585 Gene3D G3DSA:3.40.50.620 123 448 4.4E-144 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH01868 e6b6f3dfd1ca56fec37df4be84b71f46 585 SUPERFAMILY SSF47323 448 584 9.16E-33 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH01868 e6b6f3dfd1ca56fec37df4be84b71f46 585 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 133 142 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH02184 909dce375cc30abbf555d401fbb4dedb 353 Gene3D G3DSA:2.40.50.940 227 346 2.0E-7 T 12-10-2018 AMJ96_CH02184 909dce375cc30abbf555d401fbb4dedb 353 Pfam PF00005 ABC transporter 26 166 6.4E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02184 909dce375cc30abbf555d401fbb4dedb 353 SUPERFAMILY SSF52540 9 248 9.35E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02184 909dce375cc30abbf555d401fbb4dedb 353 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02184 909dce375cc30abbf555d401fbb4dedb 353 SUPERFAMILY SSF50331 242 348 6.8E-10 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH02184 909dce375cc30abbf555d401fbb4dedb 353 Gene3D G3DSA:2.40.50.140 287 343 2.0E-7 T 12-10-2018 AMJ96_CH02184 909dce375cc30abbf555d401fbb4dedb 353 Gene3D G3DSA:3.40.50.300 8 226 2.1E-68 T 12-10-2018 AMJ96_CH02184 909dce375cc30abbf555d401fbb4dedb 353 SMART SM00382 33 216 4.1E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02184 909dce375cc30abbf555d401fbb4dedb 353 Pfam PF08402 TOBE domain 280 346 3.4E-9 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_CH01309 d823116af2ac3ea69e96e81b81eda746 309 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 1.7E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01309 d823116af2ac3ea69e96e81b81eda746 309 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 98 109 1.7E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01309 d823116af2ac3ea69e96e81b81eda746 309 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 198 1.7E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01309 d823116af2ac3ea69e96e81b81eda746 309 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 200 217 1.7E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01309 d823116af2ac3ea69e96e81b81eda746 309 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 166 1.7E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01309 d823116af2ac3ea69e96e81b81eda746 309 Pfam PF00106 short chain dehydrogenase 13 217 2.8E-19 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01309 d823116af2ac3ea69e96e81b81eda746 309 Gene3D G3DSA:3.40.50.720 8 295 4.8E-41 T 12-10-2018 AMJ96_CH01309 d823116af2ac3ea69e96e81b81eda746 309 SUPERFAMILY SSF51735 9 269 2.55E-38 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03644 bcd7400b469fc25c518642a74bea2d06 314 Gene3D G3DSA:3.30.470.20 93 240 4.0E-49 T 12-10-2018 AMJ96_CH03644 bcd7400b469fc25c518642a74bea2d06 314 SUPERFAMILY SSF56104 5 292 1.77E-88 T 12-10-2018 AMJ96_CH03644 bcd7400b469fc25c518642a74bea2d06 314 Pfam PF01259 SAICAR synthetase 15 266 5.6E-79 T 12-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMJ96_CH03644 bcd7400b469fc25c518642a74bea2d06 314 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 12 289 22.275 T 12-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMJ96_CH03644 bcd7400b469fc25c518642a74bea2d06 314 Gene3D G3DSA:3.30.200.20 3 92 4.6E-25 T 12-10-2018 AMJ96_CH03644 bcd7400b469fc25c518642a74bea2d06 314 ProSitePatterns PS01058 SAICAR synthetase signature 2. 197 205 - T 12-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMJ96_CH03644 bcd7400b469fc25c518642a74bea2d06 314 ProSitePatterns PS01057 SAICAR synthetase signature 1. 91 105 - T 12-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMJ96_CH02618 412d4c19dc27ba07d5014d6365b578e5 350 Pfam PF04679 ATP dependent DNA ligase C terminal region 251 339 3.2E-20 T 12-10-2018 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 AMJ96_CH02618 412d4c19dc27ba07d5014d6365b578e5 350 Pfam PF01068 ATP dependent DNA ligase domain 58 231 3.0E-30 T 12-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 AMJ96_CH02618 412d4c19dc27ba07d5014d6365b578e5 350 SUPERFAMILY SSF56091 42 231 3.84E-47 T 12-10-2018 AMJ96_CH02618 412d4c19dc27ba07d5014d6365b578e5 350 SUPERFAMILY SSF50249 238 344 1.14E-19 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH02618 412d4c19dc27ba07d5014d6365b578e5 350 Gene3D G3DSA:3.30.1490.70 54 229 1.1E-49 T 12-10-2018 AMJ96_CH02618 412d4c19dc27ba07d5014d6365b578e5 350 Gene3D G3DSA:3.30.470.30 69 188 1.1E-49 T 12-10-2018 AMJ96_CH02618 412d4c19dc27ba07d5014d6365b578e5 350 Gene3D G3DSA:2.40.50.140 234 348 5.7E-25 T 12-10-2018 AMJ96_CH02618 412d4c19dc27ba07d5014d6365b578e5 350 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 46 346 9.2E-98 T 12-10-2018 IPR014146 DNA ligase D, ligase domain AMJ96_CH04038 e760a4b0fbe6caa6fdd00f78c2ea413e 220 Pfam PF08534 Redoxin 81 213 2.3E-18 T 12-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 AMJ96_CH04038 e760a4b0fbe6caa6fdd00f78c2ea413e 220 SUPERFAMILY SSF52833 65 215 7.89E-29 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH04038 e760a4b0fbe6caa6fdd00f78c2ea413e 220 Gene3D G3DSA:3.40.30.10 43 219 2.0E-42 T 12-10-2018 AMJ96_CH04038 e760a4b0fbe6caa6fdd00f78c2ea413e 220 ProSitePatterns PS00194 Thioredoxin family active site. 103 121 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AMJ96_CH00306 2eb75005ddb8bdf8b0dbcd7271accad5 156 Pfam PF13302 Acetyltransferase (GNAT) domain 52 135 1.4E-15 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH00306 2eb75005ddb8bdf8b0dbcd7271accad5 156 SUPERFAMILY SSF55729 2 144 4.29E-21 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH00306 2eb75005ddb8bdf8b0dbcd7271accad5 156 Gene3D G3DSA:3.40.630.30 2 151 1.8E-24 T 12-10-2018 AMJ96_CH03216 83aea878c7eec291b257928fae5891cb 166 SUPERFAMILY SSF55729 13 152 2.44E-18 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH03216 83aea878c7eec291b257928fae5891cb 166 Pfam PF00583 Acetyltransferase (GNAT) family 29 114 7.2E-8 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH03216 83aea878c7eec291b257928fae5891cb 166 Gene3D G3DSA:3.40.630.30 9 165 1.9E-27 T 12-10-2018 AMJ96_PD00212 7e67ae5d514e0f9cd88ea0738537c531 304 SUPERFAMILY SSF49493 126 206 1.14E-20 T 12-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMJ96_PD00212 7e67ae5d514e0f9cd88ea0738537c531 304 SMART SM00271 3 61 4.5E-30 T 12-10-2018 IPR001623 DnaJ domain AMJ96_PD00212 7e67ae5d514e0f9cd88ea0738537c531 304 Gene3D G3DSA:2.60.260.20 197 276 7.9E-27 T 12-10-2018 AMJ96_PD00212 7e67ae5d514e0f9cd88ea0738537c531 304 Pfam PF00226 DnaJ domain 4 66 2.1E-25 T 12-10-2018 IPR001623 DnaJ domain AMJ96_PD00212 7e67ae5d514e0f9cd88ea0738537c531 304 Gene3D G3DSA:2.60.260.20 129 196 5.7E-19 T 12-10-2018 AMJ96_PD00212 7e67ae5d514e0f9cd88ea0738537c531 304 Pfam PF01556 DnaJ C terminal domain 134 276 1.0E-34 T 12-10-2018 IPR002939 Chaperone DnaJ, C-terminal AMJ96_PD00212 7e67ae5d514e0f9cd88ea0738537c531 304 SUPERFAMILY SSF46565 3 72 6.02E-27 T 12-10-2018 IPR036869 Chaperone J-domain superfamily AMJ96_PD00212 7e67ae5d514e0f9cd88ea0738537c531 304 Gene3D G3DSA:1.10.287.110 1 128 6.1E-28 T 12-10-2018 IPR036869 Chaperone J-domain superfamily AMJ96_PD00212 7e67ae5d514e0f9cd88ea0738537c531 304 SUPERFAMILY SSF49493 202 281 4.84E-19 T 12-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMJ96_PD00212 7e67ae5d514e0f9cd88ea0738537c531 304 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 12-10-2018 IPR018253 DnaJ domain, conserved site AMJ96_PD00212 7e67ae5d514e0f9cd88ea0738537c531 304 PRINTS PR00625 DnaJ domain signature 24 39 1.8E-20 T 12-10-2018 IPR001623 DnaJ domain AMJ96_PD00212 7e67ae5d514e0f9cd88ea0738537c531 304 PRINTS PR00625 DnaJ domain signature 6 24 1.8E-20 T 12-10-2018 IPR001623 DnaJ domain AMJ96_PD00212 7e67ae5d514e0f9cd88ea0738537c531 304 PRINTS PR00625 DnaJ domain signature 41 61 1.8E-20 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH01528 9e9d1949f2ba9725791162fe0eb121bd 712 Gene3D G3DSA:3.40.228.10 152 549 1.9E-106 T 12-10-2018 AMJ96_CH01528 9e9d1949f2ba9725791162fe0eb121bd 712 Gene3D G3DSA:3.30.2070.10 446 528 1.9E-106 T 12-10-2018 AMJ96_CH01528 9e9d1949f2ba9725791162fe0eb121bd 712 SUPERFAMILY SSF50692 585 709 4.75E-28 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMJ96_CH01528 9e9d1949f2ba9725791162fe0eb121bd 712 Pfam PF00384 Molybdopterin oxidoreductase 75 487 2.0E-46 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01528 9e9d1949f2ba9725791162fe0eb121bd 712 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 631 658 - T 12-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AMJ96_CH01528 9e9d1949f2ba9725791162fe0eb121bd 712 SMART SM00926 16 72 5.8E-15 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01528 9e9d1949f2ba9725791162fe0eb121bd 712 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 20 72 3.5E-8 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01528 9e9d1949f2ba9725791162fe0eb121bd 712 SUPERFAMILY SSF53706 17 557 1.16E-136 T 12-10-2018 AMJ96_CH01528 9e9d1949f2ba9725791162fe0eb121bd 712 Gene3D G3DSA:2.20.25.90 14 77 6.1E-9 T 12-10-2018 AMJ96_CH01528 9e9d1949f2ba9725791162fe0eb121bd 712 Gene3D G3DSA:2.40.40.20 572 711 3.4E-23 T 12-10-2018 AMJ96_CH01528 9e9d1949f2ba9725791162fe0eb121bd 712 Gene3D G3DSA:3.40.50.740 86 491 1.9E-106 T 12-10-2018 AMJ96_CH01528 9e9d1949f2ba9725791162fe0eb121bd 712 Pfam PF01568 Molydopterin dinucleotide binding domain 594 697 4.1E-19 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AMJ96_CH03523 e547ccda8231f54f74da9ee9609f2f2c 101 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 32.646 T 12-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_CH03523 e547ccda8231f54f74da9ee9609f2f2c 101 Pfam PF00699 Urease beta subunit 3 100 3.3E-46 T 12-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_CH03523 e547ccda8231f54f74da9ee9609f2f2c 101 Gene3D G3DSA:2.10.150.10 1 101 1.4E-48 T 12-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_CH03523 e547ccda8231f54f74da9ee9609f2f2c 101 SUPERFAMILY SSF51278 1 101 5.62E-48 T 12-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_CH03523 e547ccda8231f54f74da9ee9609f2f2c 101 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 100 1.0E-43 T 12-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AMJ96_CH01324 17dfe5756b0b9707eb53324ddd4e159b 407 Gene3D G3DSA:1.20.1250.20 8 392 4.2E-33 T 12-10-2018 AMJ96_CH01324 17dfe5756b0b9707eb53324ddd4e159b 407 Pfam PF07690 Major Facilitator Superfamily 33 274 3.7E-15 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH01324 17dfe5756b0b9707eb53324ddd4e159b 407 SUPERFAMILY SSF103473 10 392 7.59E-36 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_PC00194 c99dc8ebdde272bb150da983b7273505 720 SMART SM00028 441 474 52.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_PC00194 c99dc8ebdde272bb150da983b7273505 720 SMART SM00028 510 543 320.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_PC00194 c99dc8ebdde272bb150da983b7273505 720 SMART SM00028 475 508 2.5 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_PC00194 c99dc8ebdde272bb150da983b7273505 720 Gene3D G3DSA:1.25.40.10 326 606 1.9E-20 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_PC00194 c99dc8ebdde272bb150da983b7273505 720 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 7 164 2.5E-11 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_PC00194 c99dc8ebdde272bb150da983b7273505 720 SUPERFAMILY SSF55073 2 171 2.51E-43 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_PC00194 c99dc8ebdde272bb150da983b7273505 720 SUPERFAMILY SSF48452 425 572 2.37E-19 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_PC00194 c99dc8ebdde272bb150da983b7273505 720 Gene3D G3DSA:3.30.70.1230 1 179 2.8E-56 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03310 0f7b105c7ff19da80a754d5f63958de5 402 SUPERFAMILY SSF103473 16 400 2.09E-50 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH03310 0f7b105c7ff19da80a754d5f63958de5 402 Pfam PF07690 Major Facilitator Superfamily 41 351 4.7E-27 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH03310 0f7b105c7ff19da80a754d5f63958de5 402 Gene3D G3DSA:1.20.1250.20 22 399 3.9E-40 T 12-10-2018 AMJ96_CH01996 11b4189f2604444acbf9f3399ef38749 239 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 191 203 2.5E-10 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AMJ96_CH01996 11b4189f2604444acbf9f3399ef38749 239 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 162 173 2.5E-10 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AMJ96_CH01996 11b4189f2604444acbf9f3399ef38749 239 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 151 161 2.5E-10 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AMJ96_CH01996 11b4189f2604444acbf9f3399ef38749 239 SUPERFAMILY SSF46785 2 68 8.3E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01996 11b4189f2604444acbf9f3399ef38749 239 Pfam PF01726 LexA DNA binding domain 2 63 2.4E-16 T 12-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 AMJ96_CH01996 11b4189f2604444acbf9f3399ef38749 239 Gene3D G3DSA:1.10.10.10 1 68 8.9E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01996 11b4189f2604444acbf9f3399ef38749 239 TIGRFAM TIGR00498 lexA: repressor LexA 2 238 3.5E-53 T 12-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 AMJ96_CH01996 11b4189f2604444acbf9f3399ef38749 239 Pfam PF00717 Peptidase S24-like 154 218 3.1E-14 T 12-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AMJ96_CH01996 11b4189f2604444acbf9f3399ef38749 239 Hamap MF_00015 LexA repressor [lexA]. 1 238 34.382 T 12-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 AMJ96_CH01996 11b4189f2604444acbf9f3399ef38749 239 Gene3D G3DSA:2.10.109.10 120 238 1.3E-37 T 12-10-2018 AMJ96_CH01996 11b4189f2604444acbf9f3399ef38749 239 SUPERFAMILY SSF51306 114 236 2.62E-33 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AMJ96_PC00371 ed08330d1db7acf447686041eb91698e 553 SMART SM00640 114 522 1.5E-62 T 12-10-2018 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 AMJ96_PC00371 ed08330d1db7acf447686041eb91698e 553 Gene3D G3DSA:2.115.10.20 110 430 4.3E-96 T 12-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily AMJ96_PC00371 ed08330d1db7acf447686041eb91698e 553 SUPERFAMILY SSF49899 493 544 6.09E-5 T 12-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily AMJ96_PC00371 ed08330d1db7acf447686041eb91698e 553 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 114 423 1.8E-67 T 12-10-2018 IPR013148 Glycosyl hydrolase family 32, N-terminal AMJ96_PC00371 ed08330d1db7acf447686041eb91698e 553 Gene3D G3DSA:2.60.120.560 431 543 4.3E-96 T 12-10-2018 AMJ96_PC00371 ed08330d1db7acf447686041eb91698e 553 SUPERFAMILY SSF75005 104 423 2.04E-80 T 12-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily AMJ96_PB00285 0a833f644e26eba70992fe4362d4b657 451 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 19 429 1.3E-107 T 12-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 AMJ96_PB00285 0a833f644e26eba70992fe4362d4b657 451 SUPERFAMILY SSF53807 8 434 7.85E-122 T 12-10-2018 AMJ96_PB00285 0a833f644e26eba70992fe4362d4b657 451 Gene3D G3DSA:1.20.89.10 269 432 2.2E-116 T 12-10-2018 AMJ96_PB00285 0a833f644e26eba70992fe4362d4b657 451 Gene3D G3DSA:3.40.50.1980 161 419 2.2E-116 T 12-10-2018 AMJ96_PB00285 0a833f644e26eba70992fe4362d4b657 451 TIGRFAM TIGR01285 nifN: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN 3 432 2.0E-194 T 12-10-2018 IPR005975 Nitrogenase molybdenum-iron cofactor biosynthesis protein GO:0009399|GO:0065003 AMJ96_PB00285 0a833f644e26eba70992fe4362d4b657 451 Gene3D G3DSA:3.40.50.1980 19 160 2.2E-116 T 12-10-2018 AMJ96_PB00285 0a833f644e26eba70992fe4362d4b657 451 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 37 44 - T 12-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 AMJ96_PB00285 0a833f644e26eba70992fe4362d4b657 451 Gene3D G3DSA:3.40.50.1980 10 412 2.2E-116 T 12-10-2018 AMJ96_PA00156 d15ff9186de871f7f37ed5c890a3376e 228 Pfam PF07298 NnrU protein 5 223 4.4E-56 T 12-10-2018 IPR009915 NnrU domain AMJ96_CH03557 6151099ec7b34032b59798fba7cd3149 302 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 77 90 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03557 6151099ec7b34032b59798fba7cd3149 302 PIRSF PIRSF000770 10 300 2.4E-38 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03557 6151099ec7b34032b59798fba7cd3149 302 Gene3D G3DSA:1.20.140.160 147 286 1.5E-15 T 12-10-2018 AMJ96_CH03557 6151099ec7b34032b59798fba7cd3149 302 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 15 285 4.4E-113 T 12-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_CH03557 6151099ec7b34032b59798fba7cd3149 302 SUPERFAMILY SSF88659 193 289 5.79E-19 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_CH03557 6151099ec7b34032b59798fba7cd3149 302 PRINTS PR00046 Major sigma-70 factor signature 101 109 2.7E-20 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03557 6151099ec7b34032b59798fba7cd3149 302 PRINTS PR00046 Major sigma-70 factor signature 254 269 2.7E-20 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03557 6151099ec7b34032b59798fba7cd3149 302 PRINTS PR00046 Major sigma-70 factor signature 77 90 2.7E-20 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03557 6151099ec7b34032b59798fba7cd3149 302 PRINTS PR00046 Major sigma-70 factor signature 269 280 2.7E-20 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03557 6151099ec7b34032b59798fba7cd3149 302 PRINTS PR00046 Major sigma-70 factor signature 235 247 2.7E-20 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03557 6151099ec7b34032b59798fba7cd3149 302 Pfam PF04542 Sigma-70 region 2 53 121 1.7E-16 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03557 6151099ec7b34032b59798fba7cd3149 302 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 254 280 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03557 6151099ec7b34032b59798fba7cd3149 302 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 48 283 4.2E-29 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03557 6151099ec7b34032b59798fba7cd3149 302 SUPERFAMILY SSF88946 13 121 7.85E-39 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03557 6151099ec7b34032b59798fba7cd3149 302 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 286 52.654 T 12-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_CH03557 6151099ec7b34032b59798fba7cd3149 302 Pfam PF00140 Sigma-70 factor, region 1.2 18 44 1.8E-6 T 12-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_CH03557 6151099ec7b34032b59798fba7cd3149 302 Pfam PF04545 Sigma-70, region 4 231 281 1.2E-15 T 12-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03557 6151099ec7b34032b59798fba7cd3149 302 Gene3D G3DSA:1.20.120.1810 13 120 3.7E-30 T 12-10-2018 AMJ96_PC00368 464f1fef4159e3121280bbec20632676 475 ProSitePatterns PS00163 Fumarate lyases signature. 323 332 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AMJ96_PC00368 464f1fef4159e3121280bbec20632676 475 Pfam PF00206 Lyase 18 348 9.4E-98 T 12-10-2018 IPR022761 Fumarate lyase, N-terminal AMJ96_PC00368 464f1fef4159e3121280bbec20632676 475 Gene3D G3DSA:1.20.200.10 146 413 9.8E-111 T 12-10-2018 AMJ96_PC00368 464f1fef4159e3121280bbec20632676 475 PRINTS PR00149 Fumarate lyase superfamily signature 186 204 3.6E-29 T 12-10-2018 IPR000362 Fumarate lyase family AMJ96_PC00368 464f1fef4159e3121280bbec20632676 475 PRINTS PR00149 Fumarate lyase superfamily signature 323 339 3.6E-29 T 12-10-2018 IPR000362 Fumarate lyase family AMJ96_PC00368 464f1fef4159e3121280bbec20632676 475 PRINTS PR00149 Fumarate lyase superfamily signature 141 159 3.6E-29 T 12-10-2018 IPR000362 Fumarate lyase family AMJ96_PC00368 464f1fef4159e3121280bbec20632676 475 PRINTS PR00149 Fumarate lyase superfamily signature 277 304 3.6E-29 T 12-10-2018 IPR000362 Fumarate lyase family AMJ96_PC00368 464f1fef4159e3121280bbec20632676 475 Pfam PF10415 Fumarase C C-terminus 414 467 2.4E-20 T 12-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMJ96_PC00368 464f1fef4159e3121280bbec20632676 475 Gene3D G3DSA:1.10.275.10 7 145 2.4E-56 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal AMJ96_PC00368 464f1fef4159e3121280bbec20632676 475 SUPERFAMILY SSF48557 9 466 1.3E-148 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMJ96_PC00368 464f1fef4159e3121280bbec20632676 475 Gene3D G3DSA:1.10.40.30 414 465 9.4E-19 T 12-10-2018 AMJ96_PC00368 464f1fef4159e3121280bbec20632676 475 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 10 471 2.4E-209 T 12-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 AMJ96_PD00013 59218c70a7cfd94f3899789a37ad894f 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 1.7E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00013 59218c70a7cfd94f3899789a37ad894f 291 Gene3D G3DSA:1.10.10.10 10 98 8.6E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00013 59218c70a7cfd94f3899789a37ad894f 291 Pfam PF03466 LysR substrate binding domain 97 288 6.0E-28 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PD00013 59218c70a7cfd94f3899789a37ad894f 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 4.0E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00013 59218c70a7cfd94f3899789a37ad894f 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 4.0E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00013 59218c70a7cfd94f3899789a37ad894f 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 4.0E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00013 59218c70a7cfd94f3899789a37ad894f 291 SUPERFAMILY SSF46785 8 88 4.45E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00013 59218c70a7cfd94f3899789a37ad894f 291 SUPERFAMILY SSF53850 97 288 4.16E-32 T 12-10-2018 AMJ96_PD00013 59218c70a7cfd94f3899789a37ad894f 291 Gene3D G3DSA:3.40.190.10 104 283 5.7E-42 T 12-10-2018 AMJ96_PD00013 59218c70a7cfd94f3899789a37ad894f 291 Gene3D G3DSA:3.40.190.10 165 257 5.7E-42 T 12-10-2018 AMJ96_CH01501 d4f349f3333407c778ef1df1a39b1df4 342 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 40 331 6.8E-101 T 12-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 AMJ96_CH01501 d4f349f3333407c778ef1df1a39b1df4 342 SUPERFAMILY SSF53659 7 335 1.41E-108 T 12-10-2018 AMJ96_CH01501 d4f349f3333407c778ef1df1a39b1df4 342 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 8 334 1.6E-122 T 12-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 AMJ96_CH01501 d4f349f3333407c778ef1df1a39b1df4 342 Gene3D G3DSA:3.40.718.10 4 337 2.6E-120 T 12-10-2018 AMJ96_CH01501 d4f349f3333407c778ef1df1a39b1df4 342 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 6 338 37.333 T 12-10-2018 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase GO:0042823|GO:0050570 KEGG: 00750+1.1.1.262 AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 SMART SM00448 529 637 3.6E-18 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 Gene3D G3DSA:3.30.450.20 142 277 2.3E-32 T 12-10-2018 AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 139 266 3.1E-26 T 12-10-2018 IPR000014 PAS domain AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 13 137 5.7E-21 T 12-10-2018 IPR000014 PAS domain AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 345 4.2E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 SUPERFAMILY SSF55874 338 510 2.49E-35 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 SUPERFAMILY SSF52172 527 640 2.28E-28 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 388 505 9.1E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 Gene3D G3DSA:1.10.287.130 278 345 4.3E-22 T 12-10-2018 AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 SMART SM00086 89 131 1.6E-4 T 12-10-2018 IPR001610 PAC motif AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 SMART SM00086 217 259 0.0014 T 12-10-2018 IPR001610 PAC motif AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 SMART SM00388 281 347 1.4E-6 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 Gene3D G3DSA:3.30.450.20 13 141 1.0E-28 T 12-10-2018 AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 SMART SM00091 15 82 2.5E-4 T 12-10-2018 IPR000014 PAS domain AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 SMART SM00091 143 210 1.8E-5 T 12-10-2018 IPR000014 PAS domain AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 PRINTS PR00344 Bacterial sensor protein C-terminal signature 491 504 2.2E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 PRINTS PR00344 Bacterial sensor protein C-terminal signature 454 464 2.2E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 450 2.2E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 485 2.2E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 SUPERFAMILY SSF47384 266 344 2.16E-9 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 Pfam PF13426 PAS domain 156 258 4.0E-15 T 12-10-2018 IPR000014 PAS domain AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 Pfam PF13426 PAS domain 28 130 3.9E-13 T 12-10-2018 IPR000014 PAS domain AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 Gene3D G3DSA:3.30.565.10 348 514 2.8E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 SUPERFAMILY SSF55785 28 140 4.89E-25 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 Gene3D G3DSA:3.40.50.2300 520 641 8.7E-26 T 12-10-2018 AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 SUPERFAMILY SSF55785 127 254 2.42E-33 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 SMART SM00387 388 507 1.3E-23 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PC00026 b1c6356dbe03a0ae94e3b177a630b898 642 Pfam PF00072 Response regulator receiver domain 531 637 2.0E-18 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01795 64f35772656fe7e47fc9fc21a21dfa68 210 Gene3D G3DSA:1.20.1050.10 86 210 1.2E-42 T 12-10-2018 AMJ96_CH01795 64f35772656fe7e47fc9fc21a21dfa68 210 Pfam PF14497 Glutathione S-transferase, C-terminal domain 120 200 6.9E-5 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMJ96_CH01795 64f35772656fe7e47fc9fc21a21dfa68 210 SUPERFAMILY SSF52833 2 86 1.36E-27 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH01795 64f35772656fe7e47fc9fc21a21dfa68 210 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 77 1.5E-19 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMJ96_CH01795 64f35772656fe7e47fc9fc21a21dfa68 210 SUPERFAMILY SSF47616 83 208 4.26E-27 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMJ96_CH01795 64f35772656fe7e47fc9fc21a21dfa68 210 Gene3D G3DSA:3.40.30.10 6 82 7.9E-29 T 12-10-2018 AMJ96_CH01795 64f35772656fe7e47fc9fc21a21dfa68 210 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 5 208 4.9E-83 T 12-10-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-204174|Reactome: R-HSA-71182 AMJ96_PD00022 11a0d6a0cb8375b34e2cebf90aa89170 427 SUPERFAMILY SSF53383 65 426 4.03E-90 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_PD00022 11a0d6a0cb8375b34e2cebf90aa89170 427 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 19 424 2.1E-104 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMJ96_PD00022 11a0d6a0cb8375b34e2cebf90aa89170 427 Gene3D G3DSA:3.90.1150.10 291 427 1.6E-45 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_PD00022 11a0d6a0cb8375b34e2cebf90aa89170 427 Gene3D G3DSA:3.40.640.10 15 289 4.8E-70 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_PD00022 11a0d6a0cb8375b34e2cebf90aa89170 427 PIRSF PIRSF001434 5 427 3.6E-120 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMJ96_PD00022 11a0d6a0cb8375b34e2cebf90aa89170 427 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 233 247 - T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMJ96_CH00820 dd13b7183d875542c4d53d5a4dfc75cf 138 SUPERFAMILY SSF161084 6 129 1.31E-20 T 12-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily AMJ96_CH00820 dd13b7183d875542c4d53d5a4dfc75cf 138 Gene3D G3DSA:1.20.120.550 6 137 2.2E-15 T 12-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily AMJ96_CH00820 dd13b7183d875542c4d53d5a4dfc75cf 138 Pfam PF01124 MAPEG family 9 132 1.6E-19 T 12-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein AMJ96_CH00299 cefb1be73f9f08e1af72a412c0f91c93 187 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 91 171 1.2E-21 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AMJ96_CH00299 cefb1be73f9f08e1af72a412c0f91c93 187 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 140 146 - T 12-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AMJ96_CH00299 cefb1be73f9f08e1af72a412c0f91c93 187 SUPERFAMILY SSF53155 7 85 4.32E-11 T 12-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AMJ96_CH00299 cefb1be73f9f08e1af72a412c0f91c93 187 SUPERFAMILY SSF46767 89 174 1.83E-21 T 12-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 AMJ96_CH00299 cefb1be73f9f08e1af72a412c0f91c93 187 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 90 173 1.2E-25 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AMJ96_CH00299 cefb1be73f9f08e1af72a412c0f91c93 187 Gene3D G3DSA:1.10.10.10 87 173 4.7E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03056 12cc03df30abc27ce68f23a7b4581577 461 SUPERFAMILY SSF53720 4 457 3.53E-132 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_CH03056 12cc03df30abc27ce68f23a7b4581577 461 Gene3D G3DSA:3.40.605.10 4 452 3.7E-135 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_CH03056 12cc03df30abc27ce68f23a7b4581577 461 Gene3D G3DSA:3.40.309.10 232 423 3.7E-135 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_CH03056 12cc03df30abc27ce68f23a7b4581577 461 Pfam PF00171 Aldehyde dehydrogenase family 4 453 3.8E-120 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_CH03056 12cc03df30abc27ce68f23a7b4581577 461 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 228 235 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMJ96_CH04286 55ce78b48db6ca1349a25d49413b7ee4 258 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 61 77 1.2E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH04286 55ce78b48db6ca1349a25d49413b7ee4 258 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 61 1.2E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH04286 55ce78b48db6ca1349a25d49413b7ee4 258 Pfam PF07702 UTRA domain 111 246 6.1E-35 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMJ96_CH04286 55ce78b48db6ca1349a25d49413b7ee4 258 SUPERFAMILY SSF64288 75 252 1.05E-45 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMJ96_CH04286 55ce78b48db6ca1349a25d49413b7ee4 258 Gene3D G3DSA:1.10.10.10 20 89 1.3E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH04286 55ce78b48db6ca1349a25d49413b7ee4 258 SMART SM00866 110 246 3.2E-35 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMJ96_CH04286 55ce78b48db6ca1349a25d49413b7ee4 258 Gene3D G3DSA:3.40.1410.10 90 253 3.1E-44 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMJ96_CH04286 55ce78b48db6ca1349a25d49413b7ee4 258 SUPERFAMILY SSF46785 22 89 4.16E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH04286 55ce78b48db6ca1349a25d49413b7ee4 258 Pfam PF00392 Bacterial regulatory proteins, gntR family 24 87 1.5E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH04286 55ce78b48db6ca1349a25d49413b7ee4 258 SMART SM00345 28 87 3.5E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH01924 d99d77c5b14f6db7d1bbd2bdb00f862d 167 Pfam PF13673 Acetyltransferase (GNAT) domain 41 147 2.4E-14 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH01924 d99d77c5b14f6db7d1bbd2bdb00f862d 167 Gene3D G3DSA:3.40.630.30 2 153 2.5E-28 T 12-10-2018 AMJ96_CH01924 d99d77c5b14f6db7d1bbd2bdb00f862d 167 SUPERFAMILY SSF55729 3 164 1.06E-22 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH02322 697db8a1c5ad7029dc6ec17acb08712c 1132 Pfam PF13116 Protein of unknown function 466 756 2.2E-11 T 12-10-2018 IPR025263 Domain of unknown function DUF3971 AMJ96_CH02322 697db8a1c5ad7029dc6ec17acb08712c 1132 Pfam PF13502 AsmA-like C-terminal region 900 1110 7.4E-7 T 12-10-2018 IPR032712 AsmA-like, C-terminal AMJ96_CH03180 3dcb737cedcf52a6f861205ee5bdd952 383 SUPERFAMILY SSF55920 151 380 7.98E-49 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like AMJ96_CH03180 3dcb737cedcf52a6f861205ee5bdd952 383 Pfam PF00557 Metallopeptidase family M24 161 363 8.5E-27 T 12-10-2018 IPR000994 Peptidase M24 AMJ96_CH03180 3dcb737cedcf52a6f861205ee5bdd952 383 Gene3D G3DSA:3.90.230.10 151 381 5.6E-37 T 12-10-2018 AMJ96_CH03180 3dcb737cedcf52a6f861205ee5bdd952 383 Pfam PF01321 Creatinase/Prolidase N-terminal domain 13 152 2.0E-21 T 12-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 AMJ96_CH03180 3dcb737cedcf52a6f861205ee5bdd952 383 SUPERFAMILY SSF53092 1 150 9.24E-33 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMJ96_CH03180 3dcb737cedcf52a6f861205ee5bdd952 383 Gene3D G3DSA:3.40.350.10 1 150 5.4E-29 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMJ96_CH02747 c55a38d4906e157eedbf67279d64e304 335 SUPERFAMILY SSF52402 11 104 6.12E-22 T 12-10-2018 AMJ96_CH02747 c55a38d4906e157eedbf67279d64e304 335 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 50 61 - T 12-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMJ96_CH02747 c55a38d4906e157eedbf67279d64e304 335 Gene3D G3DSA:3.90.1260.10 110 334 2.1E-93 T 12-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMJ96_CH02747 c55a38d4906e157eedbf67279d64e304 335 Gene3D G3DSA:3.40.50.620 3 106 1.8E-36 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH02747 c55a38d4906e157eedbf67279d64e304 335 TIGRFAM TIGR00032 argG: argininosuccinate synthase 9 330 1.6E-113 T 12-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMJ96_CH02747 c55a38d4906e157eedbf67279d64e304 335 SUPERFAMILY SSF69864 109 332 7.59E-88 T 12-10-2018 AMJ96_CH02747 c55a38d4906e157eedbf67279d64e304 335 Pfam PF00764 Arginosuccinate synthase 9 329 7.1E-123 T 12-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMJ96_CH00281 c20def7bf3853985d998d012c3a14e0a 205 SUPERFAMILY SSF55166 21 173 8.63E-17 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMJ96_CH00391 b0613eeed247a2ae638cb85130d5339f 381 SMART SM01091 268 351 7.9E-24 T 12-10-2018 IPR005170 Transporter-associated domain AMJ96_CH00391 b0613eeed247a2ae638cb85130d5339f 381 Gene3D G3DSA:3.10.580.10 180 262 1.5E-25 T 12-10-2018 AMJ96_CH00391 b0613eeed247a2ae638cb85130d5339f 381 Pfam PF03471 Transporter associated domain 269 350 2.4E-18 T 12-10-2018 IPR005170 Transporter-associated domain AMJ96_CH00391 b0613eeed247a2ae638cb85130d5339f 381 SUPERFAMILY SSF54631 85 268 3.05E-28 T 12-10-2018 AMJ96_CH00391 b0613eeed247a2ae638cb85130d5339f 381 Pfam PF00571 CBS domain 90 148 9.0E-6 T 12-10-2018 IPR000644 CBS domain AMJ96_CH00391 b0613eeed247a2ae638cb85130d5339f 381 Pfam PF00571 CBS domain 204 250 0.0054 T 12-10-2018 IPR000644 CBS domain AMJ96_CH00391 b0613eeed247a2ae638cb85130d5339f 381 Gene3D G3DSA:3.10.580.10 71 177 2.0E-23 T 12-10-2018 AMJ96_CH00391 b0613eeed247a2ae638cb85130d5339f 381 SUPERFAMILY SSF56176 268 352 4.36E-18 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMJ96_CH00391 b0613eeed247a2ae638cb85130d5339f 381 Gene3D G3DSA:3.30.465.10 263 358 2.0E-26 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 SUPERFAMILY SSF82693 151 331 4.97E-20 T 12-10-2018 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 SUPERFAMILY SSF82866 819 1015 1.57E-43 T 12-10-2018 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 Gene3D G3DSA:3.30.70.1440 660 854 3.0E-285 T 12-10-2018 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 6.6E-70 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 6.6E-70 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 PRINTS PR00702 Acriflavin resistance protein family signature 52 70 6.6E-70 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 6.6E-70 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 PRINTS PR00702 Acriflavin resistance protein family signature 548 565 6.6E-70 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 PRINTS PR00702 Acriflavin resistance protein family signature 24 48 6.6E-70 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 6.6E-70 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 6.6E-70 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 PRINTS PR00702 Acriflavin resistance protein family signature 615 629 6.6E-70 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 Gene3D G3DSA:3.30.70.1320 148 335 3.0E-285 T 12-10-2018 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 Gene3D G3DSA:1.20.1640.10 509 1011 3.0E-285 T 12-10-2018 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 SUPERFAMILY SSF82693 54 148 3.45E-22 T 12-10-2018 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 SUPERFAMILY SSF82693 561 655 1.15E-18 T 12-10-2018 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 Gene3D G3DSA:3.30.2090.10 709 797 3.0E-285 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 SUPERFAMILY SSF82714 197 274 2.88E-12 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 Gene3D G3DSA:3.30.70.1430 54 805 3.0E-285 T 12-10-2018 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 Gene3D G3DSA:3.30.70.1430 563 659 3.0E-285 T 12-10-2018 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 SUPERFAMILY SSF82693 664 841 6.28E-10 T 12-10-2018 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 SUPERFAMILY SSF82714 711 795 9.02E-13 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 Gene3D G3DSA:3.30.2090.10 192 278 3.0E-285 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 SUPERFAMILY SSF82866 301 498 4.45E-47 T 12-10-2018 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 Pfam PF00873 AcrB/AcrD/AcrF family 18 1014 8.5E-268 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH02979 21cbcc63b76348f1adc6695068e4d8b5 1051 Gene3D G3DSA:1.20.1640.10 24 508 3.0E-285 T 12-10-2018 AMJ96_PD00594 7e61ce9a87d388217fb018c76fee5bd5 254 SMART SM00345 37 96 4.2E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00594 7e61ce9a87d388217fb018c76fee5bd5 254 SMART SM00895 118 245 2.3E-17 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00594 7e61ce9a87d388217fb018c76fee5bd5 254 SUPERFAMILY SSF48008 115 252 9.94E-23 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00594 7e61ce9a87d388217fb018c76fee5bd5 254 Pfam PF07729 FCD domain 120 244 7.4E-21 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00594 7e61ce9a87d388217fb018c76fee5bd5 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 34 96 2.0E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00594 7e61ce9a87d388217fb018c76fee5bd5 254 Gene3D G3DSA:1.20.120.530 112 254 5.6E-25 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00594 7e61ce9a87d388217fb018c76fee5bd5 254 SUPERFAMILY SSF46785 29 100 2.18E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00594 7e61ce9a87d388217fb018c76fee5bd5 254 Gene3D G3DSA:1.10.10.10 30 100 3.9E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00594 7e61ce9a87d388217fb018c76fee5bd5 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 70 1.5E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00594 7e61ce9a87d388217fb018c76fee5bd5 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 70 86 1.5E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH00959 f350c0e45859e2727bd0f0fe7a3f5adf 272 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 255 2.6E-89 T 12-10-2018 AMJ96_CH00959 f350c0e45859e2727bd0f0fe7a3f5adf 272 Gene3D G3DSA:3.40.50.720 1 272 3.1E-61 T 12-10-2018 AMJ96_CH00959 f350c0e45859e2727bd0f0fe7a3f5adf 272 PIRSF PIRSF000094 5 263 6.1E-113 T 12-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMJ96_CH00959 f350c0e45859e2727bd0f0fe7a3f5adf 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 1.9E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00959 f350c0e45859e2727bd0f0fe7a3f5adf 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 1.9E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00959 f350c0e45859e2727bd0f0fe7a3f5adf 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 1.9E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00959 f350c0e45859e2727bd0f0fe7a3f5adf 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 1.9E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00959 f350c0e45859e2727bd0f0fe7a3f5adf 272 SUPERFAMILY SSF51735 10 258 8.48E-67 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00473 0457cd7acd8cf3d1cfbc173c631f57b4 1235 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 542 1035 1.4E-211 T 12-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AMJ96_PD00473 0457cd7acd8cf3d1cfbc173c631f57b4 1235 Pfam PF00171 Aldehyde dehydrogenase family 591 1029 2.0E-106 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_PD00473 0457cd7acd8cf3d1cfbc173c631f57b4 1235 SUPERFAMILY SSF53720 587 1036 1.14E-117 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_PD00473 0457cd7acd8cf3d1cfbc173c631f57b4 1235 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 839 850 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMJ96_PD00473 0457cd7acd8cf3d1cfbc173c631f57b4 1235 PIRSF PIRSF000197 17 1235 0.0 T 12-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AMJ96_PD00473 0457cd7acd8cf3d1cfbc173c631f57b4 1235 Gene3D G3DSA:3.40.605.10 564 1035 1.1E-134 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_PD00473 0457cd7acd8cf3d1cfbc173c631f57b4 1235 SUPERFAMILY SSF51730 200 548 4.71E-119 T 12-10-2018 IPR029041 FAD-linked oxidoreductase-like AMJ96_PD00473 0457cd7acd8cf3d1cfbc173c631f57b4 1235 SUPERFAMILY SSF81935 30 199 9.02E-64 T 12-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AMJ96_PD00473 0457cd7acd8cf3d1cfbc173c631f57b4 1235 Gene3D G3DSA:3.20.20.220 30 130 7.9E-18 T 12-10-2018 AMJ96_PD00473 0457cd7acd8cf3d1cfbc173c631f57b4 1235 Gene3D G3DSA:3.20.20.220 153 541 7.6E-147 T 12-10-2018 AMJ96_PD00473 0457cd7acd8cf3d1cfbc173c631f57b4 1235 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 86 197 1.2E-45 T 12-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AMJ96_PD00473 0457cd7acd8cf3d1cfbc173c631f57b4 1235 Pfam PF01619 Proline dehydrogenase 207 504 7.3E-97 T 12-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 AMJ96_PD00473 0457cd7acd8cf3d1cfbc173c631f57b4 1235 Gene3D G3DSA:3.40.309.10 814 1006 1.1E-134 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_CH01677 7e3f43409d3f6965f4d282a75bf61863 957 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 14 604 2.8E-153 T 12-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 AMJ96_CH01677 7e3f43409d3f6965f4d282a75bf61863 957 Gene3D G3DSA:2.40.50.140 36 120 8.9E-24 T 12-10-2018 AMJ96_CH01677 7e3f43409d3f6965f4d282a75bf61863 957 Gene3D G3DSA:2.40.50.140 205 298 3.3E-13 T 12-10-2018 AMJ96_CH01677 7e3f43409d3f6965f4d282a75bf61863 957 Hamap MF_00970 Ribonuclease E [rne]. 2 954 33.585 T 12-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 AMJ96_CH01677 7e3f43409d3f6965f4d282a75bf61863 957 SUPERFAMILY SSF50249 40 304 2.95E-14 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH01677 7e3f43409d3f6965f4d282a75bf61863 957 Gene3D G3DSA:3.40.1260.20 580 682 6.7E-26 T 12-10-2018 AMJ96_CH01677 7e3f43409d3f6965f4d282a75bf61863 957 Pfam PF10150 Ribonuclease E/G family 300 571 2.3E-94 T 12-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 AMJ96_CH01497 a37493e994c4fac64fc1926e6a1a89a2 405 Gene3D G3DSA:3.30.160.60 340 375 2.9E-15 T 12-10-2018 AMJ96_CH01497 a37493e994c4fac64fc1926e6a1a89a2 405 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 190 367 4.4E-61 T 12-10-2018 IPR003770 Endolytic murein transglycosylase AMJ96_CH01497 a37493e994c4fac64fc1926e6a1a89a2 405 Gene3D G3DSA:1.10.8.1150 82 155 1.6E-13 T 12-10-2018 AMJ96_CH01497 a37493e994c4fac64fc1926e6a1a89a2 405 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 52 368 34.599 T 12-10-2018 IPR003770 Endolytic murein transglycosylase AMJ96_CH01497 a37493e994c4fac64fc1926e6a1a89a2 405 Pfam PF02618 YceG-like family 89 364 2.1E-83 T 12-10-2018 IPR003770 Endolytic murein transglycosylase AMJ96_PC00326 a733fdf6a6c6d19443e1cab6bdb43920 380 SUPERFAMILY SSF52172 11 129 1.71E-10 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PC00326 a733fdf6a6c6d19443e1cab6bdb43920 380 Gene3D G3DSA:3.40.50.300 134 378 2.5E-27 T 12-10-2018 AMJ96_PC00326 a733fdf6a6c6d19443e1cab6bdb43920 380 SUPERFAMILY SSF52540 137 372 4.78E-21 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00326 a733fdf6a6c6d19443e1cab6bdb43920 380 Gene3D G3DSA:3.40.50.2300 2 132 2.2E-40 T 12-10-2018 AMJ96_PD00199 14704571a6e5ae8d72d766565d09476c 328 Gene3D G3DSA:3.30.9.10 81 278 1.0E-47 T 12-10-2018 AMJ96_PD00199 14704571a6e5ae8d72d766565d09476c 328 Pfam PF01266 FAD dependent oxidoreductase 3 314 5.7E-46 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_PD00199 14704571a6e5ae8d72d766565d09476c 328 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 3 319 5.1E-92 T 12-10-2018 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 KEGG: 00730+1.4.3.19|MetaCyc: PWY-7396|MetaCyc: PWY-7806 AMJ96_PD00199 14704571a6e5ae8d72d766565d09476c 328 SUPERFAMILY SSF51971 1 319 1.53E-26 T 12-10-2018 AMJ96_PD00199 14704571a6e5ae8d72d766565d09476c 328 SUPERFAMILY SSF54373 188 277 1.44E-19 T 12-10-2018 AMJ96_PD00199 14704571a6e5ae8d72d766565d09476c 328 Gene3D G3DSA:3.50.50.60 3 316 1.0E-47 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02762 7e30c9891feb543a1647fd55c67baefc 527 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 10 521 3.2E-90 T 12-10-2018 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 AMJ96_CH02762 7e30c9891feb543a1647fd55c67baefc 527 Pfam PF00999 Sodium/hydrogen exchanger family 12 404 5.7E-53 T 12-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMJ96_CH00618 3ea462637178341c5800322383b2463e 157 Pfam PF06793 Uncharacterised protein family (UPF0262) 7 156 4.5E-72 T 12-10-2018 IPR008321 Uncharacterised conserved protein UCP032146 AMJ96_CH00618 3ea462637178341c5800322383b2463e 157 Hamap MF_00678 UPF0262 protein . 5 156 40.988 T 12-10-2018 IPR008321 Uncharacterised conserved protein UCP032146 AMJ96_CH00618 3ea462637178341c5800322383b2463e 157 PIRSF PIRSF032146 1 157 7.0E-85 T 12-10-2018 IPR008321 Uncharacterised conserved protein UCP032146 AMJ96_CH00345 a96d9f0498479bf865aa4164d985231c 156 Pfam PF00692 dUTPase 24 155 6.4E-29 T 12-10-2018 IPR029054 dUTPase-like AMJ96_CH00345 a96d9f0498479bf865aa4164d985231c 156 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 9 156 34.044 T 12-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 AMJ96_CH00345 a96d9f0498479bf865aa4164d985231c 156 Gene3D G3DSA:2.70.40.10 8 155 2.8E-53 T 12-10-2018 IPR036157 dUTPase-like superfamily AMJ96_CH00345 a96d9f0498479bf865aa4164d985231c 156 TIGRFAM TIGR00576 dut: dUTP diphosphatase 19 155 8.5E-53 T 12-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 AMJ96_CH00345 a96d9f0498479bf865aa4164d985231c 156 SUPERFAMILY SSF51283 14 156 1.57E-48 T 12-10-2018 IPR036157 dUTPase-like superfamily AMJ96_CH03959 25866b9eb0cc4c7175c06dcc32556328 273 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 256 1.4E-52 T 12-10-2018 AMJ96_CH03959 25866b9eb0cc4c7175c06dcc32556328 273 SUPERFAMILY SSF51735 9 256 4.6E-69 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03959 25866b9eb0cc4c7175c06dcc32556328 273 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 11 198 3.7E-6 T 12-10-2018 AMJ96_CH03959 25866b9eb0cc4c7175c06dcc32556328 273 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH03959 25866b9eb0cc4c7175c06dcc32556328 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 4.4E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03959 25866b9eb0cc4c7175c06dcc32556328 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 4.4E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03959 25866b9eb0cc4c7175c06dcc32556328 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 4.4E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03959 25866b9eb0cc4c7175c06dcc32556328 273 Gene3D G3DSA:3.40.50.720 1 272 2.5E-78 T 12-10-2018 AMJ96_CH03959 25866b9eb0cc4c7175c06dcc32556328 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 1.2E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03959 25866b9eb0cc4c7175c06dcc32556328 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 1.2E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03959 25866b9eb0cc4c7175c06dcc32556328 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 1.2E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03959 25866b9eb0cc4c7175c06dcc32556328 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 1.2E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03959 25866b9eb0cc4c7175c06dcc32556328 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 1.2E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03959 25866b9eb0cc4c7175c06dcc32556328 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 1.2E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03477 85a22981692fb08281bbad900d1e1353 662 Pfam PF11941 Domain of unknown function (DUF3459) 520 614 5.4E-14 T 12-10-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) AMJ96_CH03477 85a22981692fb08281bbad900d1e1353 662 SMART SM00642 131 477 2.4E-8 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_CH03477 85a22981692fb08281bbad900d1e1353 662 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 33 543 2.0E-165 T 12-10-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|MetaCyc: PWY-2661 AMJ96_CH03477 85a22981692fb08281bbad900d1e1353 662 PIRSF PIRSF006337 19 570 3.3E-171 T 12-10-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|MetaCyc: PWY-2661 AMJ96_CH03477 85a22981692fb08281bbad900d1e1353 662 SUPERFAMILY SSF51445 106 535 2.77E-92 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH03477 85a22981692fb08281bbad900d1e1353 662 Gene3D G3DSA:2.60.40.10 20 115 6.2E-22 T 12-10-2018 IPR013783 Immunoglobulin-like fold AMJ96_CH03477 85a22981692fb08281bbad900d1e1353 662 Pfam PF00128 Alpha amylase, catalytic domain 253 452 1.6E-5 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_CH03477 85a22981692fb08281bbad900d1e1353 662 Pfam PF00128 Alpha amylase, catalytic domain 147 223 1.1E-6 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_CH03477 85a22981692fb08281bbad900d1e1353 662 SUPERFAMILY SSF81296 23 110 2.6E-18 T 12-10-2018 IPR014756 Immunoglobulin E-set AMJ96_CH03477 85a22981692fb08281bbad900d1e1353 662 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 22 91 1.9E-8 T 12-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 AMJ96_CH03477 85a22981692fb08281bbad900d1e1353 662 Gene3D G3DSA:3.20.20.80 119 529 2.2E-146 T 12-10-2018 AMJ96_CH03477 85a22981692fb08281bbad900d1e1353 662 Gene3D G3DSA:1.10.10.760 459 503 2.2E-146 T 12-10-2018 AMJ96_CH01814 480adef90257ffacd6389c4f2b846cfe 258 SUPERFAMILY SSF51735 5 246 1.1E-80 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01814 480adef90257ffacd6389c4f2b846cfe 258 Gene3D G3DSA:3.40.50.720 1 251 2.5E-82 T 12-10-2018 AMJ96_CH01814 480adef90257ffacd6389c4f2b846cfe 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 5.2E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01814 480adef90257ffacd6389c4f2b846cfe 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 5.2E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01814 480adef90257ffacd6389c4f2b846cfe 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 246 1.1E-63 T 12-10-2018 AMJ96_CH01814 480adef90257ffacd6389c4f2b846cfe 258 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 180 1.7E-5 T 12-10-2018 AMJ96_CH01814 480adef90257ffacd6389c4f2b846cfe 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH01814 480adef90257ffacd6389c4f2b846cfe 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 2.5E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01814 480adef90257ffacd6389c4f2b846cfe 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.5E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01814 480adef90257ffacd6389c4f2b846cfe 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 2.5E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01814 480adef90257ffacd6389c4f2b846cfe 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 2.5E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01814 480adef90257ffacd6389c4f2b846cfe 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 2.5E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01604 2068fe00c29cf79e54789e95f7929407 275 SUPERFAMILY SSF52096 18 274 7.85E-75 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_CH01604 2068fe00c29cf79e54789e95f7929407 275 Pfam PF00378 Enoyl-CoA hydratase/isomerase 24 274 1.0E-50 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMJ96_CH01604 2068fe00c29cf79e54789e95f7929407 275 Gene3D G3DSA:1.10.12.10 220 275 3.1E-25 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMJ96_CH01604 2068fe00c29cf79e54789e95f7929407 275 Gene3D G3DSA:3.90.226.10 11 216 3.5E-61 T 12-10-2018 AMJ96_PA00175 5f02b26a51ebd9d905dd5adc84935478 788 Pfam PF05228 CHASE4 domain 111 244 2.3E-9 T 12-10-2018 IPR007892 CHASE4 AMJ96_PA00175 5f02b26a51ebd9d905dd5adc84935478 788 Pfam PF00990 Diguanylate cyclase, GGDEF domain 331 489 1.8E-42 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PA00175 5f02b26a51ebd9d905dd5adc84935478 788 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 329 493 6.6E-36 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PA00175 5f02b26a51ebd9d905dd5adc84935478 788 SUPERFAMILY SSF141868 539 771 1.83E-79 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_PA00175 5f02b26a51ebd9d905dd5adc84935478 788 SMART SM00267 320 494 1.1E-55 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PA00175 5f02b26a51ebd9d905dd5adc84935478 788 Pfam PF00563 EAL domain 540 762 3.4E-66 T 12-10-2018 IPR001633 EAL domain AMJ96_PA00175 5f02b26a51ebd9d905dd5adc84935478 788 Gene3D G3DSA:3.30.70.270 326 507 2.7E-52 T 12-10-2018 AMJ96_PA00175 5f02b26a51ebd9d905dd5adc84935478 788 SMART SM00052 504 767 4.2E-94 T 12-10-2018 IPR001633 EAL domain AMJ96_PA00175 5f02b26a51ebd9d905dd5adc84935478 788 Gene3D G3DSA:3.20.20.450 535 775 5.9E-86 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_PA00175 5f02b26a51ebd9d905dd5adc84935478 788 SUPERFAMILY SSF55073 336 496 2.59E-44 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_PA00188 d98a74e193979e82f6e9542474c92b4f 335 Gene3D G3DSA:1.10.3720.10 106 325 5.6E-22 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00188 d98a74e193979e82f6e9542474c92b4f 335 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 134 332 5.8E-29 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PA00188 d98a74e193979e82f6e9542474c92b4f 335 SUPERFAMILY SSF161098 110 318 1.83E-20 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00165 68c2660902666088551b5ff9957911bf 355 SMART SM00382 28 211 5.1E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00165 68c2660902666088551b5ff9957911bf 355 SUPERFAMILY SSF52540 5 242 1.77E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00165 68c2660902666088551b5ff9957911bf 355 Pfam PF00005 ABC transporter 19 161 1.1E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00165 68c2660902666088551b5ff9957911bf 355 SUPERFAMILY SSF50331 236 352 5.95E-27 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_PA00165 68c2660902666088551b5ff9957911bf 355 Gene3D G3DSA:2.40.50.140 291 335 1.0E-21 T 12-10-2018 AMJ96_PA00165 68c2660902666088551b5ff9957911bf 355 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PA00165 68c2660902666088551b5ff9957911bf 355 Pfam PF08402 TOBE domain 277 344 1.5E-9 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_PA00165 68c2660902666088551b5ff9957911bf 355 Gene3D G3DSA:3.40.50.300 1 238 1.9E-74 T 12-10-2018 AMJ96_PA00165 68c2660902666088551b5ff9957911bf 355 Gene3D G3DSA:2.40.50.100 239 348 1.0E-21 T 12-10-2018 AMJ96_CH00515 b21b08261bc439b5514b13c268810d45 299 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 25 39 2.1E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH00515 b21b08261bc439b5514b13c268810d45 299 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 55 2.1E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH00515 b21b08261bc439b5514b13c268810d45 299 Gene3D G3DSA:1.10.10.10 78 144 7.6E-9 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00515 b21b08261bc439b5514b13c268810d45 299 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 61 1.4E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH00515 b21b08261bc439b5514b13c268810d45 299 Pfam PF00392 Bacterial regulatory proteins, gntR family 92 140 6.4E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH00515 b21b08261bc439b5514b13c268810d45 299 Gene3D G3DSA:1.20.120.530 148 295 2.6E-18 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH00515 b21b08261bc439b5514b13c268810d45 299 SUPERFAMILY SSF46785 79 153 1.66E-8 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00515 b21b08261bc439b5514b13c268810d45 299 Gene3D G3DSA:1.10.10.10 2 68 5.5E-10 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00515 b21b08261bc439b5514b13c268810d45 299 Pfam PF07729 FCD domain 154 281 1.6E-13 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH00515 b21b08261bc439b5514b13c268810d45 299 SMART SM00895 154 282 1.7E-9 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH00515 b21b08261bc439b5514b13c268810d45 299 SUPERFAMILY SSF46785 18 68 3.58E-8 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00515 b21b08261bc439b5514b13c268810d45 299 SUPERFAMILY SSF48008 152 290 2.09E-14 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH01623 b363135d498d734c5eeef68d508ef268 91 Pfam PF00216 Bacterial DNA-binding protein 1 90 3.1E-34 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMJ96_CH01623 b363135d498d734c5eeef68d508ef268 91 SUPERFAMILY SSF47729 1 90 6.48E-32 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMJ96_CH01623 b363135d498d734c5eeef68d508ef268 91 SMART SM00411 1 90 7.9E-44 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMJ96_CH01623 b363135d498d734c5eeef68d508ef268 91 Gene3D G3DSA:4.10.520.10 1 91 2.8E-36 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 AMJ96_CH01623 b363135d498d734c5eeef68d508ef268 91 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 5.1E-16 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMJ96_CH01623 b363135d498d734c5eeef68d508ef268 91 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 5.1E-16 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMJ96_CH01623 b363135d498d734c5eeef68d508ef268 91 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 5.1E-16 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AMJ96_CH01623 b363135d498d734c5eeef68d508ef268 91 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 12-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AMJ96_CH00040 40a937cd3dbfe6a5000a35d1bf351753 331 Gene3D G3DSA:3.40.50.300 14 331 1.7E-92 T 12-10-2018 AMJ96_CH00040 40a937cd3dbfe6a5000a35d1bf351753 331 PIRSF PIRSF000545 15 331 4.2E-140 T 12-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AMJ96_CH00040 40a937cd3dbfe6a5000a35d1bf351753 331 SUPERFAMILY SSF52540 22 330 1.31E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00040 40a937cd3dbfe6a5000a35d1bf351753 331 Hamap MF_00215 Pantothenate kinase [coaA]. 1 331 181.029 T 12-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AMJ96_CH00040 40a937cd3dbfe6a5000a35d1bf351753 331 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 104 260 1.3E-12 T 12-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 AMJ96_CH00040 40a937cd3dbfe6a5000a35d1bf351753 331 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 24 330 3.0E-128 T 12-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AMJ96_CH03146 ce24dc2195de2208dd1b99f6b15c631f 266 Pfam PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase 8 243 2.3E-76 T 12-10-2018 IPR006748 Aminoglycoside/hydroxyurea antibiotic resistance kinase GO:0006468|GO:0016773|GO:0019748 AMJ96_CH03146 ce24dc2195de2208dd1b99f6b15c631f 266 Gene3D G3DSA:3.90.1200.10 118 201 5.0E-5 T 12-10-2018 AMJ96_CH03146 ce24dc2195de2208dd1b99f6b15c631f 266 SUPERFAMILY SSF56112 22 248 2.19E-28 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily AMJ96_PC00353 cb6bbc17059d208b694b98b09b21e7c1 258 Pfam PF02110 Hydroxyethylthiazole kinase family 2 245 2.7E-77 T 12-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMJ96_PC00353 cb6bbc17059d208b694b98b09b21e7c1 258 PIRSF PIRSF000513 1 257 1.0E-87 T 12-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMJ96_PC00353 cb6bbc17059d208b694b98b09b21e7c1 258 SUPERFAMILY SSF53613 2 250 9.33E-56 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_PC00353 cb6bbc17059d208b694b98b09b21e7c1 258 Gene3D G3DSA:3.40.1190.20 1 257 1.1E-88 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_PC00353 cb6bbc17059d208b694b98b09b21e7c1 258 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 4 250 30.878 T 12-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMJ96_PC00353 cb6bbc17059d208b694b98b09b21e7c1 258 TIGRFAM TIGR00694 thiM: hydroxyethylthiazole kinase 2 247 1.9E-78 T 12-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMJ96_PC00353 cb6bbc17059d208b694b98b09b21e7c1 258 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 54 62 5.1E-37 T 12-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMJ96_PC00353 cb6bbc17059d208b694b98b09b21e7c1 258 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 80 97 5.1E-37 T 12-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMJ96_PC00353 cb6bbc17059d208b694b98b09b21e7c1 258 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 110 124 5.1E-37 T 12-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMJ96_PC00353 cb6bbc17059d208b694b98b09b21e7c1 258 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 23 44 5.1E-37 T 12-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMJ96_PC00353 cb6bbc17059d208b694b98b09b21e7c1 258 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 154 171 5.1E-37 T 12-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMJ96_PC00353 cb6bbc17059d208b694b98b09b21e7c1 258 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 10 17 5.1E-37 T 12-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMJ96_CH01211 78c1baa30c5fd9ef45e982af647dd8fc 69 SMART SM00357 3 69 1.2E-25 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 AMJ96_CH01211 78c1baa30c5fd9ef45e982af647dd8fc 69 Gene3D G3DSA:2.40.50.140 1 66 2.2E-24 T 12-10-2018 AMJ96_CH01211 78c1baa30c5fd9ef45e982af647dd8fc 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 12-10-2018 IPR019844 Cold-shock conserved site AMJ96_CH01211 78c1baa30c5fd9ef45e982af647dd8fc 69 Pfam PF00313 'Cold-shock' DNA-binding domain 3 67 5.2E-25 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_CH01211 78c1baa30c5fd9ef45e982af647dd8fc 69 PIRSF PIRSF002599 1 69 4.8E-21 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 AMJ96_CH01211 78c1baa30c5fd9ef45e982af647dd8fc 69 SUPERFAMILY SSF50249 1 67 1.39E-21 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH01211 78c1baa30c5fd9ef45e982af647dd8fc 69 PRINTS PR00050 Cold shock protein signature 25 34 3.1E-13 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_CH01211 78c1baa30c5fd9ef45e982af647dd8fc 69 PRINTS PR00050 Cold shock protein signature 4 19 3.1E-13 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_CH01211 78c1baa30c5fd9ef45e982af647dd8fc 69 PRINTS PR00050 Cold shock protein signature 40 58 3.1E-13 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_PC00349 2d9db1157f02eaf4243154a6f93d9cff 340 SUPERFAMILY SSF51445 8 317 1.58E-53 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_PC00349 2d9db1157f02eaf4243154a6f93d9cff 340 Gene3D G3DSA:3.20.20.300 6 336 2.9E-74 T 12-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 AMJ96_PC00349 2d9db1157f02eaf4243154a6f93d9cff 340 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 32 301 7.0E-43 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMJ96_PD00267 aef3bd3b66104f4b031d22c4436995e7 251 SMART SM00382 28 217 1.4E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00267 aef3bd3b66104f4b031d22c4436995e7 251 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00267 aef3bd3b66104f4b031d22c4436995e7 251 Pfam PF00005 ABC transporter 19 167 3.1E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00267 aef3bd3b66104f4b031d22c4436995e7 251 SUPERFAMILY SSF52540 3 236 5.44E-78 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00267 aef3bd3b66104f4b031d22c4436995e7 251 Gene3D G3DSA:3.40.50.300 1 241 8.9E-79 T 12-10-2018 AMJ96_PD00267 aef3bd3b66104f4b031d22c4436995e7 251 PIRSF PIRSF039085 1 242 2.5E-108 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMJ96_PC00089 1bcd7d578aaaf06a624f7aa866077c0f 240 Gene3D G3DSA:3.40.1410.10 96 226 5.4E-26 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMJ96_PC00089 1bcd7d578aaaf06a624f7aa866077c0f 240 SMART SM00345 13 72 2.9E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00089 1bcd7d578aaaf06a624f7aa866077c0f 240 Gene3D G3DSA:1.10.10.10 2 83 5.9E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00089 1bcd7d578aaaf06a624f7aa866077c0f 240 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 2.4E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00089 1bcd7d578aaaf06a624f7aa866077c0f 240 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 2.4E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00089 1bcd7d578aaaf06a624f7aa866077c0f 240 SUPERFAMILY SSF64288 98 236 5.18E-34 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMJ96_PC00089 1bcd7d578aaaf06a624f7aa866077c0f 240 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 8 237 3.2E-88 T 12-10-2018 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 AMJ96_PC00089 1bcd7d578aaaf06a624f7aa866077c0f 240 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 72 8.7E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00089 1bcd7d578aaaf06a624f7aa866077c0f 240 SMART SM00866 93 230 1.9E-25 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMJ96_PC00089 1bcd7d578aaaf06a624f7aa866077c0f 240 SUPERFAMILY SSF46785 2 76 3.91E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00089 1bcd7d578aaaf06a624f7aa866077c0f 240 Pfam PF07702 UTRA domain 99 229 7.1E-28 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMJ96_PD00105 019beac6cd4411d9ae8094023d6bc59c 219 Pfam PF07729 FCD domain 82 210 1.3E-18 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00105 019beac6cd4411d9ae8094023d6bc59c 219 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 70 1.2E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00105 019beac6cd4411d9ae8094023d6bc59c 219 SMART SM00895 82 211 3.1E-11 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00105 019beac6cd4411d9ae8094023d6bc59c 219 Gene3D G3DSA:1.20.120.530 78 218 8.0E-19 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00105 019beac6cd4411d9ae8094023d6bc59c 219 Gene3D G3DSA:1.10.10.10 1 73 2.5E-9 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00105 019beac6cd4411d9ae8094023d6bc59c 219 SUPERFAMILY SSF46785 6 86 3.34E-9 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00105 019beac6cd4411d9ae8094023d6bc59c 219 SUPERFAMILY SSF48008 80 217 1.33E-17 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH01722 f4eaa71e9edf3a679415ac9c15d1cc28 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 1.3E-56 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01722 f4eaa71e9edf3a679415ac9c15d1cc28 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 4.2E-38 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01722 f4eaa71e9edf3a679415ac9c15d1cc28 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 4.2E-38 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01722 f4eaa71e9edf3a679415ac9c15d1cc28 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 4.2E-38 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01722 f4eaa71e9edf3a679415ac9c15d1cc28 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 4.2E-38 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01722 f4eaa71e9edf3a679415ac9c15d1cc28 137 SUPERFAMILY SSF54686 1 134 3.53E-55 T 12-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01722 f4eaa71e9edf3a679415ac9c15d1cc28 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 38.375 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01722 f4eaa71e9edf3a679415ac9c15d1cc28 137 Gene3D G3DSA:3.90.1170.10 1 137 3.6E-57 T 12-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01722 f4eaa71e9edf3a679415ac9c15d1cc28 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 3.0E-49 T 12-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01722 f4eaa71e9edf3a679415ac9c15d1cc28 137 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 12-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01722 f4eaa71e9edf3a679415ac9c15d1cc28 137 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 12-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH00834 aed3fa34518bbbd2ceacde029cfea536 224 SUPERFAMILY SSF56925 49 224 1.41E-17 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMJ96_CH00834 aed3fa34518bbbd2ceacde029cfea536 224 Gene3D G3DSA:2.40.160.20 30 223 2.1E-17 T 12-10-2018 AMJ96_CH00834 aed3fa34518bbbd2ceacde029cfea536 224 Pfam PF13505 Outer membrane protein beta-barrel domain 15 223 4.0E-17 T 12-10-2018 IPR027385 Outer membrane protein beta-barrel AMJ96_CH03243 f8197573c7f8043be31ea245f43a532b 281 SUPERFAMILY SSF161098 87 273 1.83E-41 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03243 f8197573c7f8043be31ea245f43a532b 281 Gene3D G3DSA:1.10.3720.10 84 275 3.8E-35 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03243 f8197573c7f8043be31ea245f43a532b 281 TIGRFAM TIGR03416 ABC_choXWV_perm: choline ABC transporter, permease protein 6 272 2.1E-135 T 12-10-2018 IPR017784 ABC transporter, choline, permease protein AMJ96_CH03243 f8197573c7f8043be31ea245f43a532b 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 268 3.5E-23 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00198 3a4d1995cc5b0ae023a52599f7d7aa3a 329 SUPERFAMILY SSF52540 37 315 8.87E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00198 3a4d1995cc5b0ae023a52599f7d7aa3a 329 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 239 322 1.4E-24 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PC00198 3a4d1995cc5b0ae023a52599f7d7aa3a 329 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00198 3a4d1995cc5b0ae023a52599f7d7aa3a 329 Pfam PF00005 ABC transporter 29 188 3.2E-22 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00198 3a4d1995cc5b0ae023a52599f7d7aa3a 329 Gene3D G3DSA:3.40.50.300 1 328 2.0E-80 T 12-10-2018 AMJ96_PC00198 3a4d1995cc5b0ae023a52599f7d7aa3a 329 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 240 303 4.7E-19 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PC00198 3a4d1995cc5b0ae023a52599f7d7aa3a 329 SMART SM00382 37 247 1.6E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01380 ea441960c4a27404f0eb1a678a22b11c 455 PIRSF PIRSF006603 2 448 1.4E-51 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMJ96_CH01380 ea441960c4a27404f0eb1a678a22b11c 455 Pfam PF01554 MatE 31 187 4.8E-16 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMJ96_CH01380 ea441960c4a27404f0eb1a678a22b11c 455 Pfam PF01554 MatE 245 409 6.5E-16 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMJ96_CH04308 18b130ac5f22934b41248de9b14b041a 555 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 371 543 5.5E-11 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH04308 18b130ac5f22934b41248de9b14b041a 555 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 123 282 3.7E-6 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH04308 18b130ac5f22934b41248de9b14b041a 555 SUPERFAMILY SSF161098 50 286 3.46E-35 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH04308 18b130ac5f22934b41248de9b14b041a 555 Gene3D G3DSA:1.10.3720.10 53 294 3.0E-39 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH04308 18b130ac5f22934b41248de9b14b041a 555 Gene3D G3DSA:1.10.3720.10 308 553 3.2E-25 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH04308 18b130ac5f22934b41248de9b14b041a 555 SUPERFAMILY SSF161098 313 546 1.4E-30 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02486 8d9f4e7c739d40ad57c5cf023aaee8be 272 SMART SM00028 10 43 0.0075 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02486 8d9f4e7c739d40ad57c5cf023aaee8be 272 SUPERFAMILY SSF53335 71 269 4.74E-32 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH02486 8d9f4e7c739d40ad57c5cf023aaee8be 272 SUPERFAMILY SSF48452 5 44 2.95E-5 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02486 8d9f4e7c739d40ad57c5cf023aaee8be 272 Pfam PF13847 Methyltransferase domain 109 210 1.6E-12 T 12-10-2018 IPR025714 Methyltransferase domain AMJ96_CH02486 8d9f4e7c739d40ad57c5cf023aaee8be 272 Gene3D G3DSA:3.40.50.150 70 258 3.1E-26 T 12-10-2018 AMJ96_CH02486 8d9f4e7c739d40ad57c5cf023aaee8be 272 Gene3D G3DSA:1.25.40.10 1 59 1.4E-5 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03103 e303ce59a3f11c2669fcf5135f1bd04f 140 SUPERFAMILY SSF111038 3 140 1.24E-46 T 12-10-2018 IPR035917 YjbQ-like superfamily AMJ96_CH03103 e303ce59a3f11c2669fcf5135f1bd04f 140 PIRSF PIRSF004681 1 140 7.9E-46 T 12-10-2018 IPR001602 Uncharacterised protein family UPF0047 AMJ96_CH03103 e303ce59a3f11c2669fcf5135f1bd04f 140 ProSitePatterns PS01314 Uncharacterized protein family UPF0047 signature. 102 120 - T 12-10-2018 IPR001602 Uncharacterised protein family UPF0047 AMJ96_CH03103 e303ce59a3f11c2669fcf5135f1bd04f 140 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 3 138 1.8E-40 T 12-10-2018 IPR001602 Uncharacterised protein family UPF0047 AMJ96_CH03103 e303ce59a3f11c2669fcf5135f1bd04f 140 Gene3D G3DSA:2.60.120.460 2 138 5.4E-40 T 12-10-2018 IPR035917 YjbQ-like superfamily AMJ96_CH03103 e303ce59a3f11c2669fcf5135f1bd04f 140 Pfam PF01894 Uncharacterised protein family UPF0047 18 137 6.0E-36 T 12-10-2018 IPR001602 Uncharacterised protein family UPF0047 AMJ96_PC00373 8f7867bdcb5987091cff7250b9488a68 380 Gene3D G3DSA:2.40.50.140 289 363 7.4E-27 T 12-10-2018 AMJ96_PC00373 8f7867bdcb5987091cff7250b9488a68 380 Gene3D G3DSA:2.40.50.940 223 372 7.4E-27 T 12-10-2018 AMJ96_PC00373 8f7867bdcb5987091cff7250b9488a68 380 Gene3D G3DSA:3.40.50.300 3 222 3.0E-62 T 12-10-2018 AMJ96_PC00373 8f7867bdcb5987091cff7250b9488a68 380 Pfam PF00005 ABC transporter 20 162 2.1E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00373 8f7867bdcb5987091cff7250b9488a68 380 SMART SM00382 29 212 1.5E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00373 8f7867bdcb5987091cff7250b9488a68 380 SUPERFAMILY SSF50331 237 379 3.16E-20 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_PC00373 8f7867bdcb5987091cff7250b9488a68 380 SUPERFAMILY SSF52540 4 244 7.83E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00373 8f7867bdcb5987091cff7250b9488a68 380 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02800 e79098cd610809e91545a44d534b258f 333 Pfam PF13407 Periplasmic binding protein domain 61 308 6.3E-17 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_CH02800 e79098cd610809e91545a44d534b258f 333 SMART SM00354 3 72 8.0E-6 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH02800 e79098cd610809e91545a44d534b258f 333 SUPERFAMILY SSF53822 60 328 3.93E-30 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH02800 e79098cd610809e91545a44d534b258f 333 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 47 1.3E-10 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH02800 e79098cd610809e91545a44d534b258f 333 Gene3D G3DSA:1.10.260.40 2 47 3.9E-12 T 12-10-2018 AMJ96_CH02800 e79098cd610809e91545a44d534b258f 333 Gene3D G3DSA:3.40.50.2300 70 322 2.8E-27 T 12-10-2018 AMJ96_CH02800 e79098cd610809e91545a44d534b258f 333 Gene3D G3DSA:3.40.50.2300 162 327 2.8E-27 T 12-10-2018 AMJ96_CH02800 e79098cd610809e91545a44d534b258f 333 SUPERFAMILY SSF47413 3 49 2.39E-10 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PA00055 39ceda7ff36d04528a867cc814972ea9 234 SMART SM00345 18 76 5.5E-14 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PA00055 39ceda7ff36d04528a867cc814972ea9 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 3.8E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PA00055 39ceda7ff36d04528a867cc814972ea9 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 3.8E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PA00055 39ceda7ff36d04528a867cc814972ea9 234 SMART SM00895 86 212 5.4E-12 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PA00055 39ceda7ff36d04528a867cc814972ea9 234 Gene3D G3DSA:1.20.120.530 85 220 1.1E-23 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PA00055 39ceda7ff36d04528a867cc814972ea9 234 Pfam PF07729 FCD domain 88 211 3.8E-20 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PA00055 39ceda7ff36d04528a867cc814972ea9 234 Gene3D G3DSA:1.10.10.10 12 77 4.9E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PA00055 39ceda7ff36d04528a867cc814972ea9 234 SUPERFAMILY SSF48008 96 220 6.28E-23 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PA00055 39ceda7ff36d04528a867cc814972ea9 234 SUPERFAMILY SSF46785 14 80 2.44E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PA00055 39ceda7ff36d04528a867cc814972ea9 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 76 3.3E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH03771 53f08134e15b7b681bec519790142bfb 217 Gene3D G3DSA:3.20.20.70 1 210 1.9E-27 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH03771 53f08134e15b7b681bec519790142bfb 217 Pfam PF02581 Thiamine monophosphate synthase 10 187 1.8E-34 T 12-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMJ96_CH03771 53f08134e15b7b681bec519790142bfb 217 SUPERFAMILY SSF51391 6 196 3.14E-36 T 12-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMJ96_CH00243 737ef659cb555d063e93c04fb479f1e1 593 Gene3D G3DSA:3.40.50.1220 204 362 1.1E-90 T 12-10-2018 AMJ96_CH00243 737ef659cb555d063e93c04fb479f1e1 593 Gene3D G3DSA:3.40.50.970 363 543 1.1E-90 T 12-10-2018 AMJ96_CH00243 737ef659cb555d063e93c04fb479f1e1 593 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 406 543 3.1E-32 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMJ96_CH00243 737ef659cb555d063e93c04fb479f1e1 593 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 178 2.2E-49 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMJ96_CH00243 737ef659cb555d063e93c04fb479f1e1 593 SUPERFAMILY SSF52467 161 356 1.25E-34 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMJ96_CH00243 737ef659cb555d063e93c04fb479f1e1 593 SUPERFAMILY SSF52518 1 183 6.73E-44 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_CH00243 737ef659cb555d063e93c04fb479f1e1 593 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 198 334 5.3E-27 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMJ96_CH00243 737ef659cb555d063e93c04fb479f1e1 593 Gene3D G3DSA:3.40.50.970 1 183 2.6E-55 T 12-10-2018 AMJ96_CH00243 737ef659cb555d063e93c04fb479f1e1 593 SUPERFAMILY SSF52518 370 546 1.46E-43 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_CH04331 0ca093d7eef984fe00de67f5fc466c91 160 Pfam PF02590 Predicted SPOUT methyltransferase 1 158 9.3E-47 T 12-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 AMJ96_CH04331 0ca093d7eef984fe00de67f5fc466c91 160 SUPERFAMILY SSF75217 1 157 1.37E-47 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases AMJ96_CH04331 0ca093d7eef984fe00de67f5fc466c91 160 PIRSF PIRSF004505 1 159 5.7E-49 T 12-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 AMJ96_CH04331 0ca093d7eef984fe00de67f5fc466c91 160 Gene3D G3DSA:3.40.1280.10 1 159 1.4E-50 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMJ96_CH04331 0ca093d7eef984fe00de67f5fc466c91 160 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 159 28.296 T 12-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 AMJ96_CH01433 c52249f0c5ec6e3116c6ac10a07a8c65 247 Pfam PF10502 Signal peptidase, peptidase S26 177 217 1.4E-5 T 12-10-2018 IPR019533 Peptidase S26 AMJ96_CH01433 c52249f0c5ec6e3116c6ac10a07a8c65 247 Pfam PF00717 Peptidase S24-like 38 126 1.2E-23 T 12-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AMJ96_CH01433 c52249f0c5ec6e3116c6ac10a07a8c65 247 ProSitePatterns PS00501 Signal peptidases I serine active site. 41 48 - T 12-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 AMJ96_CH01433 c52249f0c5ec6e3116c6ac10a07a8c65 247 ProSitePatterns PS00761 Signal peptidases I signature 3. 185 198 - T 12-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 AMJ96_CH01433 c52249f0c5ec6e3116c6ac10a07a8c65 247 Gene3D G3DSA:2.170.230.10 113 179 1.9E-63 T 12-10-2018 AMJ96_CH01433 c52249f0c5ec6e3116c6ac10a07a8c65 247 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 16 221 9.9E-54 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMJ96_CH01433 c52249f0c5ec6e3116c6ac10a07a8c65 247 Gene3D G3DSA:2.10.109.10 30 220 1.9E-63 T 12-10-2018 AMJ96_CH01433 c52249f0c5ec6e3116c6ac10a07a8c65 247 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 102 114 2.6E-24 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMJ96_CH01433 c52249f0c5ec6e3116c6ac10a07a8c65 247 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 32 48 2.6E-24 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMJ96_CH01433 c52249f0c5ec6e3116c6ac10a07a8c65 247 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 180 199 2.6E-24 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AMJ96_CH01433 c52249f0c5ec6e3116c6ac10a07a8c65 247 SUPERFAMILY SSF51306 30 245 4.45E-69 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AMJ96_CH00973 718a4429fc0ca720b718783ec1d121f7 566 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 37 564 3.0E-222 T 12-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 AMJ96_CH00973 718a4429fc0ca720b718783ec1d121f7 566 SUPERFAMILY SSF81442 33 565 3.14E-218 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00973 718a4429fc0ca720b718783ec1d121f7 566 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 289 343 - T 12-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00973 718a4429fc0ca720b718783ec1d121f7 566 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 45 512 9.8E-156 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00973 718a4429fc0ca720b718783ec1d121f7 566 PRINTS PR01165 Cytochrome c oxidase subunit I signature 101 124 1.6E-149 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00973 718a4429fc0ca720b718783ec1d121f7 566 PRINTS PR01165 Cytochrome c oxidase subunit I signature 420 439 1.6E-149 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00973 718a4429fc0ca720b718783ec1d121f7 566 PRINTS PR01165 Cytochrome c oxidase subunit I signature 129 153 1.6E-149 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00973 718a4429fc0ca720b718783ec1d121f7 566 PRINTS PR01165 Cytochrome c oxidase subunit I signature 176 188 1.6E-149 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00973 718a4429fc0ca720b718783ec1d121f7 566 PRINTS PR01165 Cytochrome c oxidase subunit I signature 392 410 1.6E-149 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00973 718a4429fc0ca720b718783ec1d121f7 566 PRINTS PR01165 Cytochrome c oxidase subunit I signature 236 255 1.6E-149 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00973 718a4429fc0ca720b718783ec1d121f7 566 PRINTS PR01165 Cytochrome c oxidase subunit I signature 36 61 1.6E-149 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00973 718a4429fc0ca720b718783ec1d121f7 566 PRINTS PR01165 Cytochrome c oxidase subunit I signature 207 225 1.6E-149 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00973 718a4429fc0ca720b718783ec1d121f7 566 PRINTS PR01165 Cytochrome c oxidase subunit I signature 470 491 1.6E-149 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00973 718a4429fc0ca720b718783ec1d121f7 566 PRINTS PR01165 Cytochrome c oxidase subunit I signature 287 308 1.6E-149 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00973 718a4429fc0ca720b718783ec1d121f7 566 PRINTS PR01165 Cytochrome c oxidase subunit I signature 357 378 1.6E-149 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00973 718a4429fc0ca720b718783ec1d121f7 566 PRINTS PR01165 Cytochrome c oxidase subunit I signature 333 348 1.6E-149 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00973 718a4429fc0ca720b718783ec1d121f7 566 Gene3D G3DSA:1.20.210.10 32 566 1.1E-242 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH04291 a5a2822f536ce3f670b0fb425fc55c78 189 SMART SM00841 131 186 4.8E-26 T 12-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 AMJ96_CH04291 a5a2822f536ce3f670b0fb425fc55c78 189 Pfam PF09285 Elongation factor P, C-terminal 131 186 6.8E-21 T 12-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 AMJ96_CH04291 a5a2822f536ce3f670b0fb425fc55c78 189 SUPERFAMILY SSF50249 130 187 3.94E-16 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH04291 a5a2822f536ce3f670b0fb425fc55c78 189 Pfam PF01132 Elongation factor P (EF-P) OB domain 71 123 3.7E-21 T 12-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 AMJ96_CH04291 a5a2822f536ce3f670b0fb425fc55c78 189 SMART SM01185 69 123 1.1E-24 T 12-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 AMJ96_CH04291 a5a2822f536ce3f670b0fb425fc55c78 189 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 12-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site AMJ96_CH04291 a5a2822f536ce3f670b0fb425fc55c78 189 Hamap MF_00141 Elongation factor P [efp]. 3 187 44.524 T 12-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 AMJ96_CH04291 a5a2822f536ce3f670b0fb425fc55c78 189 Gene3D G3DSA:2.30.30.30 4 65 3.0E-15 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 AMJ96_CH04291 a5a2822f536ce3f670b0fb425fc55c78 189 SUPERFAMILY SSF50249 67 128 4.71E-17 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH04291 a5a2822f536ce3f670b0fb425fc55c78 189 Gene3D G3DSA:2.40.50.140 67 129 3.2E-24 T 12-10-2018 AMJ96_CH04291 a5a2822f536ce3f670b0fb425fc55c78 189 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 6 62 2.3E-16 T 12-10-2018 IPR013185 Translation elongation factor, KOW-like AMJ96_CH04291 a5a2822f536ce3f670b0fb425fc55c78 189 TIGRFAM TIGR00038 efp: translation elongation factor P 6 187 4.4E-63 T 12-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 AMJ96_CH04291 a5a2822f536ce3f670b0fb425fc55c78 189 PIRSF PIRSF005901 2 188 5.4E-60 T 12-10-2018 IPR020599 Translation elongation factor P/YeiP AMJ96_CH04291 a5a2822f536ce3f670b0fb425fc55c78 189 Gene3D G3DSA:2.40.50.140 130 188 1.6E-20 T 12-10-2018 AMJ96_CH04291 a5a2822f536ce3f670b0fb425fc55c78 189 SUPERFAMILY SSF50104 6 65 1.44E-12 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMJ96_PA00088 eae3e8bf28ff04454b490d31d72e732f 410 Gene3D G3DSA:3.40.50.970 3 408 8.1E-125 T 12-10-2018 AMJ96_PA00088 eae3e8bf28ff04454b490d31d72e732f 410 SUPERFAMILY SSF52518 49 406 2.64E-95 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_PA00088 eae3e8bf28ff04454b490d31d72e732f 410 Pfam PF00676 Dehydrogenase E1 component 83 379 5.4E-91 T 12-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 AMJ96_PA00088 eae3e8bf28ff04454b490d31d72e732f 410 Pfam PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal 6 44 8.8E-20 T 12-10-2018 IPR022593 2-oxoisovalerate dehydrogenase, E1 alpha subunit, N-terminal domain KEGG: 00280+1.2.4.4|KEGG: 00640+1.2.4.4|MetaCyc: PWY-5046 AMJ96_CH02311 86a8b3662597b1fea869c6579423b17a 424 SUPERFAMILY SSF101960 22 422 1.11E-94 T 12-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily AMJ96_CH02311 86a8b3662597b1fea869c6579423b17a 424 Pfam PF01458 Uncharacterized protein family (UPF0051) 173 395 1.3E-63 T 12-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 AMJ96_CH02311 86a8b3662597b1fea869c6579423b17a 424 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 141 412 1.6E-84 T 12-10-2018 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 AMJ96_CH00110 09ffeb82ba26be2cb672bae03d11721c 410 SUPERFAMILY SSF53901 218 407 4.22E-60 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH00110 09ffeb82ba26be2cb672bae03d11721c 410 SUPERFAMILY SSF53901 1 256 7.49E-62 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH00110 09ffeb82ba26be2cb672bae03d11721c 410 Gene3D G3DSA:3.40.47.10 1 257 2.6E-62 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH00110 09ffeb82ba26be2cb672bae03d11721c 410 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 157 173 - T 12-10-2018 IPR018201 Beta-ketoacyl synthase, active site AMJ96_CH00110 09ffeb82ba26be2cb672bae03d11721c 410 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 257 364 5.7E-29 T 12-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AMJ96_CH00110 09ffeb82ba26be2cb672bae03d11721c 410 Gene3D G3DSA:3.40.47.10 263 408 2.4E-48 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH00110 09ffeb82ba26be2cb672bae03d11721c 410 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 249 8.6E-39 T 12-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AMJ96_CH00110 09ffeb82ba26be2cb672bae03d11721c 410 SMART SM00825 Beta-ketoacyl synthase 4 410 1.5E-12 T 12-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMJ96_PD00186 d47baad64ae075743a2603a6168695e8 125 Pfam PF00034 Cytochrome c 39 122 2.1E-7 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00186 d47baad64ae075743a2603a6168695e8 125 Gene3D G3DSA:1.10.760.10 1 125 3.2E-23 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_PD00186 d47baad64ae075743a2603a6168695e8 125 SUPERFAMILY SSF46626 29 123 6.21E-17 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_CH03737 cc66c4758cdbff3516a572a7387ee856 657 SUPERFAMILY SSF52922 530 656 8.25E-40 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMJ96_CH03737 cc66c4758cdbff3516a572a7387ee856 657 ProSitePatterns PS00801 Transketolase signature 1. 15 35 - T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMJ96_CH03737 cc66c4758cdbff3516a572a7387ee856 657 Pfam PF02780 Transketolase, C-terminal domain 544 649 1.8E-10 T 12-10-2018 IPR033248 Transketolase, C-terminal domain AMJ96_CH03737 cc66c4758cdbff3516a572a7387ee856 657 Gene3D G3DSA:3.40.50.970 322 531 2.0E-75 T 12-10-2018 AMJ96_CH03737 cc66c4758cdbff3516a572a7387ee856 657 TIGRFAM TIGR00232 tktlase_bact: transketolase 10 654 3.3E-256 T 12-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 AMJ96_CH03737 cc66c4758cdbff3516a572a7387ee856 657 Gene3D G3DSA:3.40.50.970 3 320 4.0E-116 T 12-10-2018 AMJ96_CH03737 cc66c4758cdbff3516a572a7387ee856 657 SUPERFAMILY SSF52518 337 519 3.37E-65 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_CH03737 cc66c4758cdbff3516a572a7387ee856 657 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 8 329 1.6E-141 T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMJ96_CH03737 cc66c4758cdbff3516a572a7387ee856 657 Gene3D G3DSA:3.40.50.920 534 655 2.5E-38 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMJ96_CH03737 cc66c4758cdbff3516a572a7387ee856 657 SUPERFAMILY SSF52518 3 317 5.47E-116 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_CH03737 cc66c4758cdbff3516a572a7387ee856 657 SMART SM00861 350 522 1.7E-65 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMJ96_CH03737 cc66c4758cdbff3516a572a7387ee856 657 Pfam PF02779 Transketolase, pyrimidine binding domain 350 520 2.1E-42 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMJ96_CH03737 cc66c4758cdbff3516a572a7387ee856 657 ProSitePatterns PS00802 Transketolase signature 2. 463 479 - T 12-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMJ96_CH00054 c4ee18a627ee66fe0cdd14c7d1e143d9 227 Pfam PF03734 L,D-transpeptidase catalytic domain 86 225 4.1E-16 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMJ96_CH00054 c4ee18a627ee66fe0cdd14c7d1e143d9 227 Gene3D G3DSA:2.40.440.10 52 227 9.8E-38 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH00054 c4ee18a627ee66fe0cdd14c7d1e143d9 227 SUPERFAMILY SSF141523 79 217 7.32E-29 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH01320 a18c4a62350ef6d94d1273b10604b75d 186 Gene3D G3DSA:1.10.357.10 4 183 1.7E-33 T 12-10-2018 AMJ96_CH01320 a18c4a62350ef6d94d1273b10604b75d 186 SUPERFAMILY SSF46689 7 73 4.99E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH01320 a18c4a62350ef6d94d1273b10604b75d 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 57 8.2E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH01320 a18c4a62350ef6d94d1273b10604b75d 186 SUPERFAMILY SSF48498 76 181 4.62E-14 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_PA00024 cb2428e87c1f794cb7341e136954e55b 155 Gene3D G3DSA:3.90.79.10 10 143 1.3E-26 T 12-10-2018 AMJ96_PA00024 cb2428e87c1f794cb7341e136954e55b 155 ProSitePatterns PS00893 Nudix box signature. 45 66 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMJ96_PA00024 cb2428e87c1f794cb7341e136954e55b 155 Pfam PF00293 NUDIX domain 11 128 5.4E-19 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMJ96_PA00024 cb2428e87c1f794cb7341e136954e55b 155 SUPERFAMILY SSF55811 5 143 5.82E-29 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_CH00046 a9a3bedb60a77037ca6ed33c93ae8b33 216 SUPERFAMILY SSF52317 3 205 4.87E-51 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH00046 a9a3bedb60a77037ca6ed33c93ae8b33 216 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 2 214 33.523 T 12-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AMJ96_CH00046 a9a3bedb60a77037ca6ed33c93ae8b33 216 PIRSF PIRSF000495 1 216 2.3E-64 T 12-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AMJ96_CH00046 a9a3bedb60a77037ca6ed33c93ae8b33 216 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 3 213 9.0E-59 T 12-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AMJ96_CH00046 a9a3bedb60a77037ca6ed33c93ae8b33 216 Gene3D G3DSA:3.40.50.880 1 215 5.6E-64 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH00046 a9a3bedb60a77037ca6ed33c93ae8b33 216 Pfam PF00117 Glutamine amidotransferase class-I 14 211 9.3E-19 T 12-10-2018 IPR017926 Glutamine amidotransferase AMJ96_PB00199 7f5348df7695dbc9c0460ec1170b8c39 342 SMART SM00382 162 317 1.7E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PB00199 7f5348df7695dbc9c0460ec1170b8c39 342 TIGRFAM TIGR02788 VirB11: P-type DNA transfer ATPase VirB11 20 327 5.1E-126 T 12-10-2018 IPR014155 Type IV secretion system protein VirB11 GO:0043684|GO:0044097 AMJ96_PB00199 7f5348df7695dbc9c0460ec1170b8c39 342 SUPERFAMILY SSF52540 14 330 1.77E-50 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PB00199 7f5348df7695dbc9c0460ec1170b8c39 342 Pfam PF00437 Type II/IV secretion system protein 16 315 1.7E-68 T 12-10-2018 IPR001482 Type II/IV secretion system protein AMJ96_PB00199 7f5348df7695dbc9c0460ec1170b8c39 342 Gene3D G3DSA:3.40.50.300 117 335 2.4E-62 T 12-10-2018 AMJ96_PB00199 7f5348df7695dbc9c0460ec1170b8c39 342 Gene3D G3DSA:3.30.450.90 9 116 3.6E-38 T 12-10-2018 AMJ96_CH03013 6f19ad371f66460353e945c9abeffab5 324 SUPERFAMILY SSF56194 207 310 7.32E-37 T 12-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH03013 6f19ad371f66460353e945c9abeffab5 324 SUPERFAMILY SSF56176 30 217 1.27E-37 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMJ96_CH03013 6f19ad371f66460353e945c9abeffab5 324 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 207 305 1.3E-26 T 12-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH03013 6f19ad371f66460353e945c9abeffab5 324 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 324 96.788 T 12-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH03013 6f19ad371f66460353e945c9abeffab5 324 Gene3D G3DSA:3.30.43.10 16 93 6.8E-21 T 12-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AMJ96_CH03013 6f19ad371f66460353e945c9abeffab5 324 Gene3D G3DSA:3.30.465.10 100 223 1.8E-28 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMJ96_CH03013 6f19ad371f66460353e945c9abeffab5 324 Pfam PF01565 FAD binding domain 44 170 3.2E-13 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMJ96_CH03013 6f19ad371f66460353e945c9abeffab5 324 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 34 307 1.7E-48 T 12-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH03013 6f19ad371f66460353e945c9abeffab5 324 Gene3D G3DSA:3.90.78.10 224 310 2.0E-29 T 12-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH03819 3f7ce9ec5bad7ca358f188419e25dd21 120 SMART SM00448 3 114 4.0E-20 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03819 3f7ce9ec5bad7ca358f188419e25dd21 120 SUPERFAMILY SSF52172 4 119 2.99E-30 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH03819 3f7ce9ec5bad7ca358f188419e25dd21 120 Gene3D G3DSA:3.40.50.2300 2 120 4.5E-30 T 12-10-2018 AMJ96_CH03819 3f7ce9ec5bad7ca358f188419e25dd21 120 Pfam PF00072 Response regulator receiver domain 5 114 3.1E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH04067 0699c35754c1a4309378ec66a1aefec3 94 SUPERFAMILY SSF82657 1 93 1.83E-23 T 12-10-2018 IPR036065 BolA-like superfamily AMJ96_CH04067 0699c35754c1a4309378ec66a1aefec3 94 Gene3D G3DSA:3.30.300.90 1 91 3.8E-28 T 12-10-2018 AMJ96_CH04067 0699c35754c1a4309378ec66a1aefec3 94 Pfam PF01722 BolA-like protein 12 90 8.9E-28 T 12-10-2018 IPR002634 BolA protein AMJ96_CH04067 0699c35754c1a4309378ec66a1aefec3 94 PIRSF PIRSF003113 1 94 2.0E-27 T 12-10-2018 IPR002634 BolA protein AMJ96_CH02346 8ddedc03af91f7ba72b87ae52850aaae 472 Gene3D G3DSA:3.40.640.10 143 357 8.0E-54 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH02346 8ddedc03af91f7ba72b87ae52850aaae 472 SUPERFAMILY SSF53383 72 463 1.5E-65 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH02346 8ddedc03af91f7ba72b87ae52850aaae 472 Gene3D G3DSA:1.10.10.10 9 79 6.2E-16 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02346 8ddedc03af91f7ba72b87ae52850aaae 472 Pfam PF00155 Aminotransferase class I and II 169 432 1.1E-24 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_CH02346 8ddedc03af91f7ba72b87ae52850aaae 472 Gene3D G3DSA:3.90.1150.10 118 457 8.0E-54 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH02346 8ddedc03af91f7ba72b87ae52850aaae 472 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 78 3.2E-10 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02346 8ddedc03af91f7ba72b87ae52850aaae 472 SMART SM00345 19 78 2.4E-10 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02346 8ddedc03af91f7ba72b87ae52850aaae 472 SUPERFAMILY SSF46785 12 85 9.72E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01727 4e5d2d51eebd3bff987d88eb18548a7b 185 PIRSF PIRSF002161 4 185 1.2E-65 T 12-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01727 4e5d2d51eebd3bff987d88eb18548a7b 185 ProSitePatterns PS00358 Ribosomal protein L5 signature. 63 79 - T 12-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01727 4e5d2d51eebd3bff987d88eb18548a7b 185 SUPERFAMILY SSF55282 9 184 9.42E-77 T 12-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01727 4e5d2d51eebd3bff987d88eb18548a7b 185 Pfam PF00673 ribosomal L5P family C-terminus 90 183 1.5E-42 T 12-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01727 4e5d2d51eebd3bff987d88eb18548a7b 185 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 7 185 41.956 T 12-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01727 4e5d2d51eebd3bff987d88eb18548a7b 185 Gene3D G3DSA:3.30.1440.10 5 185 2.0E-79 T 12-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01727 4e5d2d51eebd3bff987d88eb18548a7b 185 Pfam PF00281 Ribosomal protein L5 30 86 2.6E-25 T 12-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH00273 3c1b2ed02b6b8814b0407516deb8f1ed 67 SUPERFAMILY SSF143034 2 62 3.01E-19 T 12-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH00273 3c1b2ed02b6b8814b0407516deb8f1ed 67 Gene3D G3DSA:2.40.50.530 1 65 6.9E-21 T 12-10-2018 AMJ96_CH00273 3c1b2ed02b6b8814b0407516deb8f1ed 67 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 2.3E-19 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMJ96_CH00273 3c1b2ed02b6b8814b0407516deb8f1ed 67 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 12-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH00273 3c1b2ed02b6b8814b0407516deb8f1ed 67 Pfam PF01632 Ribosomal protein L35 2 59 4.7E-19 T 12-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH00273 3c1b2ed02b6b8814b0407516deb8f1ed 67 PRINTS PR00064 Ribosomal protein L35 signature 21 35 3.3E-10 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMJ96_CH00273 3c1b2ed02b6b8814b0407516deb8f1ed 67 PRINTS PR00064 Ribosomal protein L35 signature 36 54 3.3E-10 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMJ96_CH00273 3c1b2ed02b6b8814b0407516deb8f1ed 67 PRINTS PR00064 Ribosomal protein L35 signature 3 20 3.3E-10 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMJ96_CH00273 3c1b2ed02b6b8814b0407516deb8f1ed 67 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 16.218 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AMJ96_PD00612 e1cfa801aa70205559138e7aa04a11a4 270 SMART SM00382 44 237 2.5E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00612 e1cfa801aa70205559138e7aa04a11a4 270 Pfam PF00005 ABC transporter 36 187 2.1E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00612 e1cfa801aa70205559138e7aa04a11a4 270 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00612 e1cfa801aa70205559138e7aa04a11a4 270 Gene3D G3DSA:3.40.50.300 10 270 1.5E-82 T 12-10-2018 AMJ96_PD00612 e1cfa801aa70205559138e7aa04a11a4 270 SUPERFAMILY SSF52540 12 259 7.94E-71 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00229 57f89842aa2ea2c7b41ea53001edacec 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 87 109 1.4E-51 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMJ96_CH00229 57f89842aa2ea2c7b41ea53001edacec 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 109 136 1.4E-51 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMJ96_CH00229 57f89842aa2ea2c7b41ea53001edacec 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 38 50 1.4E-51 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMJ96_CH00229 57f89842aa2ea2c7b41ea53001edacec 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 255 280 1.4E-51 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMJ96_CH00229 57f89842aa2ea2c7b41ea53001edacec 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 6 32 1.4E-51 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMJ96_CH00229 57f89842aa2ea2c7b41ea53001edacec 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 233 255 1.4E-51 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMJ96_CH00229 57f89842aa2ea2c7b41ea53001edacec 294 SUPERFAMILY SSF53328 86 282 2.88E-60 T 12-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMJ96_CH00229 57f89842aa2ea2c7b41ea53001edacec 294 Gene3D G3DSA:3.40.50.170 86 283 1.4E-68 T 12-10-2018 AMJ96_CH00229 57f89842aa2ea2c7b41ea53001edacec 294 PIRSF PIRSF036480 1 282 4.9E-113 T 12-10-2018 AMJ96_CH00229 57f89842aa2ea2c7b41ea53001edacec 294 Gene3D G3DSA:3.30.70.260 1 85 5.5E-27 T 12-10-2018 AMJ96_CH00229 57f89842aa2ea2c7b41ea53001edacec 294 SUPERFAMILY SSF55021 3 82 3.58E-16 T 12-10-2018 AMJ96_CH00229 57f89842aa2ea2c7b41ea53001edacec 294 Pfam PF00551 Formyl transferase 86 263 3.8E-38 T 12-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMJ96_CH00229 57f89842aa2ea2c7b41ea53001edacec 294 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 1 281 47.499 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMJ96_CH00229 57f89842aa2ea2c7b41ea53001edacec 294 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 5 281 4.4E-101 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMJ96_PC00424 57f89842aa2ea2c7b41ea53001edacec 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 87 109 1.4E-51 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMJ96_PC00424 57f89842aa2ea2c7b41ea53001edacec 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 109 136 1.4E-51 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMJ96_PC00424 57f89842aa2ea2c7b41ea53001edacec 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 38 50 1.4E-51 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMJ96_PC00424 57f89842aa2ea2c7b41ea53001edacec 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 255 280 1.4E-51 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMJ96_PC00424 57f89842aa2ea2c7b41ea53001edacec 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 6 32 1.4E-51 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMJ96_PC00424 57f89842aa2ea2c7b41ea53001edacec 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 233 255 1.4E-51 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMJ96_PC00424 57f89842aa2ea2c7b41ea53001edacec 294 SUPERFAMILY SSF53328 86 282 2.88E-60 T 12-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMJ96_PC00424 57f89842aa2ea2c7b41ea53001edacec 294 Gene3D G3DSA:3.40.50.170 86 283 1.4E-68 T 12-10-2018 AMJ96_PC00424 57f89842aa2ea2c7b41ea53001edacec 294 PIRSF PIRSF036480 1 282 4.9E-113 T 12-10-2018 AMJ96_PC00424 57f89842aa2ea2c7b41ea53001edacec 294 Gene3D G3DSA:3.30.70.260 1 85 5.5E-27 T 12-10-2018 AMJ96_PC00424 57f89842aa2ea2c7b41ea53001edacec 294 SUPERFAMILY SSF55021 3 82 3.58E-16 T 12-10-2018 AMJ96_PC00424 57f89842aa2ea2c7b41ea53001edacec 294 Pfam PF00551 Formyl transferase 86 263 3.8E-38 T 12-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMJ96_PC00424 57f89842aa2ea2c7b41ea53001edacec 294 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 1 281 47.499 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMJ96_PC00424 57f89842aa2ea2c7b41ea53001edacec 294 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 5 281 4.4E-101 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 AMJ96_CH03641 232048947c8c7bcccb9ce7ff7f35d6c3 267 SUPERFAMILY SSF55174 27 113 6.33E-14 T 12-10-2018 AMJ96_CH03641 232048947c8c7bcccb9ce7ff7f35d6c3 267 Gene3D G3DSA:3.30.70.580 87 246 7.6E-53 T 12-10-2018 AMJ96_CH03641 232048947c8c7bcccb9ce7ff7f35d6c3 267 Gene3D G3DSA:3.30.70.1560 148 238 7.6E-53 T 12-10-2018 AMJ96_CH03641 232048947c8c7bcccb9ce7ff7f35d6c3 267 Pfam PF00849 RNA pseudouridylate synthase 86 219 3.0E-21 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH03641 232048947c8c7bcccb9ce7ff7f35d6c3 267 Pfam PF01479 S4 domain 27 62 2.3E-7 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH03641 232048947c8c7bcccb9ce7ff7f35d6c3 267 SUPERFAMILY SSF55120 83 254 4.32E-41 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH03641 232048947c8c7bcccb9ce7ff7f35d6c3 267 SMART SM00363 25 83 0.0046 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH03641 232048947c8c7bcccb9ce7ff7f35d6c3 267 Gene3D G3DSA:3.10.290.10 23 81 3.7E-12 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMJ96_CH03641 232048947c8c7bcccb9ce7ff7f35d6c3 267 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 124 138 - T 12-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 AMJ96_CH03641 232048947c8c7bcccb9ce7ff7f35d6c3 267 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 90 250 1.9E-46 T 12-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 AMJ96_PC00396 165f09c6bd3e91da195f6012d87518db 491 Pfam PF07364 Metallopeptidase family M81 2 289 2.6E-78 T 12-10-2018 IPR015995 Microcystin LR degradation protein MlrC, N-terminal AMJ96_PC00396 165f09c6bd3e91da195f6012d87518db 491 Pfam PF07171 MlrC C-terminus 298 471 1.0E-50 T 12-10-2018 IPR010799 Microcystin LR degradation protein MlrC, C-terminal AMJ96_PC00396 165f09c6bd3e91da195f6012d87518db 491 PIRSF PIRSF012702 1 488 8.1E-166 T 12-10-2018 IPR009197 Microcystin LR degradation protein MlrC AMJ96_CH00377 c00805b9d57f03a3b9f0f3c78688f494 239 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 12-10-2018 IPR018336 Ribonuclease PH, conserved site AMJ96_CH00377 c00805b9d57f03a3b9f0f3c78688f494 239 SUPERFAMILY SSF54211 1 182 4.86E-46 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_CH00377 c00805b9d57f03a3b9f0f3c78688f494 239 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 1.5E-22 T 12-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMJ96_CH00377 c00805b9d57f03a3b9f0f3c78688f494 239 SUPERFAMILY SSF55666 156 237 5.37E-22 T 12-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMJ96_CH00377 c00805b9d57f03a3b9f0f3c78688f494 239 Gene3D G3DSA:3.30.230.70 10 238 9.1E-59 T 12-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMJ96_CH00377 c00805b9d57f03a3b9f0f3c78688f494 239 Hamap MF_00564 Ribonuclease PH [rph]. 11 238 43.809 T 12-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 AMJ96_CH00377 c00805b9d57f03a3b9f0f3c78688f494 239 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 237 6.1E-117 T 12-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 AMJ96_CH00377 c00805b9d57f03a3b9f0f3c78688f494 239 Pfam PF03725 3' exoribonuclease family, domain 2 160 225 6.0E-9 T 12-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AMJ96_CH00867 22763258fdbddb7dd844ec5f0bb7389a 240 SUPERFAMILY SSF56784 6 236 2.88E-41 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_CH00867 22763258fdbddb7dd844ec5f0bb7389a 240 Gene3D G3DSA:3.40.50.1000 10 223 7.3E-29 T 12-10-2018 IPR023214 HAD superfamily AMJ96_CH00867 22763258fdbddb7dd844ec5f0bb7389a 240 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 120 199 1.5E-10 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH00867 22763258fdbddb7dd844ec5f0bb7389a 240 Gene3D G3DSA:1.10.150.240 22 102 7.3E-29 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMJ96_CH00867 22763258fdbddb7dd844ec5f0bb7389a 240 Pfam PF13419 Haloacid dehalogenase-like hydrolase 104 200 4.6E-17 T 12-10-2018 AMJ96_CH00867 22763258fdbddb7dd844ec5f0bb7389a 240 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 3.3E-5 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH00867 22763258fdbddb7dd844ec5f0bb7389a 240 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 149 165 3.3E-5 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH00867 22763258fdbddb7dd844ec5f0bb7389a 240 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 118 131 3.3E-5 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_PC00399 3e216ba8342df09a2c60451044152d33 287 Gene3D G3DSA:1.10.10.10 2 77 7.1E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00399 3e216ba8342df09a2c60451044152d33 287 Pfam PF01418 Helix-turn-helix domain, rpiR family 5 72 3.1E-17 T 12-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AMJ96_PC00399 3e216ba8342df09a2c60451044152d33 287 SUPERFAMILY SSF53697 91 256 5.87E-31 T 12-10-2018 AMJ96_PC00399 3e216ba8342df09a2c60451044152d33 287 Pfam PF01380 SIS domain 124 250 3.8E-15 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMJ96_PC00399 3e216ba8342df09a2c60451044152d33 287 SUPERFAMILY SSF46689 2 72 1.42E-18 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PC00399 3e216ba8342df09a2c60451044152d33 287 Gene3D G3DSA:3.40.50.10490 91 274 4.3E-35 T 12-10-2018 AMJ96_PB00330 d103b6ecd6df68a1114730453b0f0962 309 SUPERFAMILY SSF48576 18 270 5.96E-60 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMJ96_PB00330 d103b6ecd6df68a1114730453b0f0962 309 Pfam PF00348 Polyprenyl synthetase 36 254 9.2E-44 T 12-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 AMJ96_PB00330 d103b6ecd6df68a1114730453b0f0962 309 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 210 222 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site AMJ96_PB00330 d103b6ecd6df68a1114730453b0f0962 309 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 87 103 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site AMJ96_PB00330 d103b6ecd6df68a1114730453b0f0962 309 Gene3D G3DSA:1.10.600.10 10 288 2.8E-61 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMJ96_CH03604 6d1de9a9836a8869f998fdf20229f9c2 339 Pfam PF13641 Glycosyltransferase like family 2 36 164 8.4E-7 T 12-10-2018 AMJ96_CH03604 6d1de9a9836a8869f998fdf20229f9c2 339 Gene3D G3DSA:3.90.550.10 23 244 4.0E-15 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03604 6d1de9a9836a8869f998fdf20229f9c2 339 SUPERFAMILY SSF53448 37 241 3.09E-22 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00554 c85b5572422cedd644fbdc369347cccc 117 Gene3D G3DSA:3.20.170.20 5 116 1.2E-33 T 12-10-2018 AMJ96_CH00554 c85b5572422cedd644fbdc369347cccc 117 Pfam PF06108 Protein of unknown function (DUF952) 10 98 8.1E-29 T 12-10-2018 IPR009297 Protein of unknown function DUF952 AMJ96_CH00554 c85b5572422cedd644fbdc369347cccc 117 SUPERFAMILY SSF56399 6 114 1.38E-37 T 12-10-2018 AMJ96_CH04181 9bfa9218059ab836a9abac15d8b4fc53 101 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 5 94 2.1E-30 T 12-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 AMJ96_CH04181 9bfa9218059ab836a9abac15d8b4fc53 101 Gene3D G3DSA:3.30.1360.20 1 98 7.2E-36 T 12-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 AMJ96_CH04181 9bfa9218059ab836a9abac15d8b4fc53 101 SUPERFAMILY SSF55248 4 96 1.03E-32 T 12-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 AMJ96_CH04181 9bfa9218059ab836a9abac15d8b4fc53 101 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 3 96 24.89 T 12-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 AMJ96_CH00225 cf457c70b62cdb32eda42900db1e527f 509 SUPERFAMILY SSF53850 32 494 2.84E-124 T 12-10-2018 AMJ96_CH00225 cf457c70b62cdb32eda42900db1e527f 509 PIRSF PIRSF002741 8 509 1.7E-104 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_CH00225 cf457c70b62cdb32eda42900db1e527f 509 Gene3D G3DSA:3.10.105.10 280 479 7.7E-54 T 12-10-2018 AMJ96_CH00225 cf457c70b62cdb32eda42900db1e527f 509 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 82 415 4.1E-86 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_CH00225 cf457c70b62cdb32eda42900db1e527f 509 Gene3D G3DSA:3.40.190.10 23 279 2.4E-67 T 12-10-2018 AMJ96_PC00345 07e33b18a4bcebb40d75ad0584375224 267 SMART SM00382 34 232 5.0E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00345 07e33b18a4bcebb40d75ad0584375224 267 SUPERFAMILY SSF52540 5 254 2.01E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00345 07e33b18a4bcebb40d75ad0584375224 267 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00345 07e33b18a4bcebb40d75ad0584375224 267 Pfam PF00005 ABC transporter 26 182 1.9E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00345 07e33b18a4bcebb40d75ad0584375224 267 Gene3D G3DSA:3.40.50.300 3 264 2.0E-80 T 12-10-2018 AMJ96_CH03237 208d8201d2c805c153e7fe3fe2aaa4cc 241 ProSitePatterns PS00622 LuxR-type HTH domain signature. 194 221 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH03237 208d8201d2c805c153e7fe3fe2aaa4cc 241 Pfam PF00196 Bacterial regulatory proteins, luxR family 179 234 2.5E-17 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH03237 208d8201d2c805c153e7fe3fe2aaa4cc 241 SUPERFAMILY SSF46894 166 240 4.42E-19 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH03237 208d8201d2c805c153e7fe3fe2aaa4cc 241 Gene3D G3DSA:3.30.450.80 13 174 3.2E-5 T 12-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily AMJ96_CH03237 208d8201d2c805c153e7fe3fe2aaa4cc 241 Gene3D G3DSA:1.10.10.10 175 241 4.8E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03237 208d8201d2c805c153e7fe3fe2aaa4cc 241 SUPERFAMILY SSF75516 26 166 2.75E-10 T 12-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily AMJ96_CH03237 208d8201d2c805c153e7fe3fe2aaa4cc 241 Pfam PF03472 Autoinducer binding domain 29 164 3.4E-11 T 12-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain AMJ96_CH03237 208d8201d2c805c153e7fe3fe2aaa4cc 241 SMART SM00421 177 234 6.0E-19 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH03237 208d8201d2c805c153e7fe3fe2aaa4cc 241 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 210 222 1.2E-9 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH03237 208d8201d2c805c153e7fe3fe2aaa4cc 241 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 194 210 1.2E-9 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH03237 208d8201d2c805c153e7fe3fe2aaa4cc 241 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 194 1.2E-9 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH02349 3b9396df14e18dbc2709eb78441bea5f 77 PIRSF PIRSF003113 1 77 4.9E-19 T 12-10-2018 IPR002634 BolA protein AMJ96_CH02349 3b9396df14e18dbc2709eb78441bea5f 77 Pfam PF01722 BolA-like protein 27 77 2.4E-15 T 12-10-2018 IPR002634 BolA protein AMJ96_CH02349 3b9396df14e18dbc2709eb78441bea5f 77 SUPERFAMILY SSF82657 2 77 3.14E-23 T 12-10-2018 IPR036065 BolA-like superfamily AMJ96_CH02349 3b9396df14e18dbc2709eb78441bea5f 77 Gene3D G3DSA:3.30.300.90 3 76 1.6E-28 T 12-10-2018 AMJ96_CH02633 2f0d1a4d967469ff7848238c9f3006ff 249 Pfam PF14099 Polysaccharide lyase 26 226 3.3E-30 T 12-10-2018 IPR025975 Polysaccharide lyase MetaCyc: PWY-7644 AMJ96_CH02633 2f0d1a4d967469ff7848238c9f3006ff 249 Gene3D G3DSA:2.60.120.200 22 249 6.7E-40 T 12-10-2018 AMJ96_CH01203 d8ee3a6a4d4cd58eee13c51a53907401 596 SUPERFAMILY SSF55785 22 127 9.95E-24 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH01203 d8ee3a6a4d4cd58eee13c51a53907401 596 SMART SM00091 133 201 28.0 T 12-10-2018 IPR000014 PAS domain AMJ96_CH01203 d8ee3a6a4d4cd58eee13c51a53907401 596 SMART SM00091 12 80 1.7 T 12-10-2018 IPR000014 PAS domain AMJ96_CH01203 d8ee3a6a4d4cd58eee13c51a53907401 596 Gene3D G3DSA:3.30.450.20 12 145 1.3E-23 T 12-10-2018 AMJ96_CH01203 d8ee3a6a4d4cd58eee13c51a53907401 596 Pfam PF13426 PAS domain 150 247 1.6E-11 T 12-10-2018 IPR000014 PAS domain AMJ96_CH01203 d8ee3a6a4d4cd58eee13c51a53907401 596 SMART SM00283 299 546 5.7E-100 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH01203 d8ee3a6a4d4cd58eee13c51a53907401 596 Gene3D G3DSA:3.30.450.20 146 246 2.9E-17 T 12-10-2018 AMJ96_CH01203 d8ee3a6a4d4cd58eee13c51a53907401 596 SMART SM00086 85 126 0.0023 T 12-10-2018 IPR001610 PAC motif AMJ96_CH01203 d8ee3a6a4d4cd58eee13c51a53907401 596 SMART SM00086 206 248 0.6 T 12-10-2018 IPR001610 PAC motif AMJ96_CH01203 d8ee3a6a4d4cd58eee13c51a53907401 596 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 397 424 2.7E-43 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH01203 d8ee3a6a4d4cd58eee13c51a53907401 596 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 426 455 2.7E-43 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH01203 d8ee3a6a4d4cd58eee13c51a53907401 596 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 320 349 2.7E-43 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH01203 d8ee3a6a4d4cd58eee13c51a53907401 596 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 474 503 2.7E-43 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH01203 d8ee3a6a4d4cd58eee13c51a53907401 596 Gene3D G3DSA:1.10.287.950 247 548 5.0E-77 T 12-10-2018 AMJ96_CH01203 d8ee3a6a4d4cd58eee13c51a53907401 596 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 359 512 1.4E-49 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH01203 d8ee3a6a4d4cd58eee13c51a53907401 596 SUPERFAMILY SSF55785 144 245 1.13E-20 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH01203 d8ee3a6a4d4cd58eee13c51a53907401 596 SUPERFAMILY SSF58104 266 552 2.01E-68 T 12-10-2018 AMJ96_CH01203 d8ee3a6a4d4cd58eee13c51a53907401 596 Pfam PF08447 PAS fold 35 119 3.8E-12 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 AMJ96_CH01203 d8ee3a6a4d4cd58eee13c51a53907401 596 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 144 250 7.3E-12 T 12-10-2018 IPR000014 PAS domain AMJ96_CH01203 d8ee3a6a4d4cd58eee13c51a53907401 596 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 18 128 1.2E-15 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00001 09c26da2b0ae54743ed1db7030057710 157 SUPERFAMILY SSF48657 5 120 2.75E-19 T 12-10-2018 IPR036442 ProQ/FinO domain superfamily AMJ96_PD00001 09c26da2b0ae54743ed1db7030057710 157 SMART SM00945 20 131 8.9E-4 T 12-10-2018 IPR016103 ProQ/FinO domain AMJ96_PD00001 09c26da2b0ae54743ed1db7030057710 157 Gene3D G3DSA:1.10.1710.10 14 121 2.2E-5 T 12-10-2018 IPR036442 ProQ/FinO domain superfamily AMJ96_PD00001 09c26da2b0ae54743ed1db7030057710 157 Pfam PF04352 ProQ/FINO family 42 125 2.7E-10 T 12-10-2018 IPR016103 ProQ/FinO domain AMJ96_CH03696 69d3c861e9045d2033f7f0fe392a39be 450 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 260 368 2.5E-35 T 12-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03696 69d3c861e9045d2033f7f0fe392a39be 450 Gene3D G3DSA:3.30.310.50 373 448 2.2E-22 T 12-10-2018 AMJ96_CH03696 69d3c861e9045d2033f7f0fe392a39be 450 SUPERFAMILY SSF53738 260 368 3.37E-33 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03696 69d3c861e9045d2033f7f0fe392a39be 450 Gene3D G3DSA:3.40.120.10 259 342 5.2E-68 T 12-10-2018 AMJ96_CH03696 69d3c861e9045d2033f7f0fe392a39be 450 SUPERFAMILY SSF53738 158 259 1.96E-30 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03696 69d3c861e9045d2033f7f0fe392a39be 450 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 159 256 1.0E-18 T 12-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03696 69d3c861e9045d2033f7f0fe392a39be 450 SUPERFAMILY SSF55957 361 446 4.58E-21 T 12-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03696 69d3c861e9045d2033f7f0fe392a39be 450 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 2 446 47.73 T 12-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03696 69d3c861e9045d2033f7f0fe392a39be 450 Gene3D G3DSA:3.40.120.10 2 153 1.4E-50 T 12-10-2018 AMJ96_CH03696 69d3c861e9045d2033f7f0fe392a39be 450 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 6 444 1.5E-195 T 12-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03696 69d3c861e9045d2033f7f0fe392a39be 450 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 378 440 2.2E-15 T 12-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03696 69d3c861e9045d2033f7f0fe392a39be 450 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 236 251 4.2E-13 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03696 69d3c861e9045d2033f7f0fe392a39be 450 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 4.2E-13 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03696 69d3c861e9045d2033f7f0fe392a39be 450 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 176 195 4.2E-13 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03696 69d3c861e9045d2033f7f0fe392a39be 450 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 12-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03696 69d3c861e9045d2033f7f0fe392a39be 450 Gene3D G3DSA:3.40.120.10 176 365 5.2E-68 T 12-10-2018 AMJ96_CH03696 69d3c861e9045d2033f7f0fe392a39be 450 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 136 2.7E-45 T 12-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_CH03696 69d3c861e9045d2033f7f0fe392a39be 450 SUPERFAMILY SSF53738 2 168 1.02E-48 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AMJ96_PB00379 b1036d4da24f498b26b69425332c5f91 147 PRINTS PR00155 Amicyanin family signature 61 76 2.0E-39 T 12-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AMJ96_PB00379 b1036d4da24f498b26b69425332c5f91 147 PRINTS PR00155 Amicyanin family signature 98 113 2.0E-39 T 12-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AMJ96_PB00379 b1036d4da24f498b26b69425332c5f91 147 PRINTS PR00155 Amicyanin family signature 82 97 2.0E-39 T 12-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AMJ96_PB00379 b1036d4da24f498b26b69425332c5f91 147 PRINTS PR00155 Amicyanin family signature 25 40 2.0E-39 T 12-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AMJ96_PB00379 b1036d4da24f498b26b69425332c5f91 147 PRINTS PR00155 Amicyanin family signature 41 60 2.0E-39 T 12-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AMJ96_PB00379 b1036d4da24f498b26b69425332c5f91 147 Gene3D G3DSA:2.60.40.420 24 146 1.3E-36 T 12-10-2018 IPR008972 Cupredoxin AMJ96_PB00379 b1036d4da24f498b26b69425332c5f91 147 PRINTS PR00156 Type I copper blue protein family signature 93 107 4.9E-16 T 12-10-2018 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 AMJ96_PB00379 b1036d4da24f498b26b69425332c5f91 147 PRINTS PR00156 Type I copper blue protein family signature 61 76 4.9E-16 T 12-10-2018 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 AMJ96_PB00379 b1036d4da24f498b26b69425332c5f91 147 PRINTS PR00156 Type I copper blue protein family signature 47 60 4.9E-16 T 12-10-2018 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 AMJ96_PB00379 b1036d4da24f498b26b69425332c5f91 147 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 29 115 1.1E-17 T 12-10-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 AMJ96_PB00379 b1036d4da24f498b26b69425332c5f91 147 TIGRFAM TIGR02375 pseudoazurin: pseudoazurin 30 145 7.1E-49 T 12-10-2018 IPR012745 Pseudoazurin GO:0005507 AMJ96_PB00379 b1036d4da24f498b26b69425332c5f91 147 SUPERFAMILY SSF49503 25 139 2.1E-33 T 12-10-2018 IPR008972 Cupredoxin AMJ96_CH00170 9c620011761953379d8792bca6ceebff 258 SUPERFAMILY SSF52540 4 254 5.22E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00170 9c620011761953379d8792bca6ceebff 258 Gene3D G3DSA:3.40.50.300 4 258 2.7E-66 T 12-10-2018 AMJ96_CH00170 9c620011761953379d8792bca6ceebff 258 TIGRFAM TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK 5 256 1.1E-124 T 12-10-2018 IPR012700 Phosphonate C-P lyase system, PhnK AMJ96_CH00170 9c620011761953379d8792bca6ceebff 258 Pfam PF00005 ABC transporter 23 179 5.1E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00170 9c620011761953379d8792bca6ceebff 258 PIRSF PIRSF037116 1 258 2.6E-148 T 12-10-2018 IPR012700 Phosphonate C-P lyase system, PhnK AMJ96_CH00170 9c620011761953379d8792bca6ceebff 258 SMART SM00382 31 229 9.2E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00170 9c620011761953379d8792bca6ceebff 258 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00244 a301f231f37f19c0fc71f48739c766b7 95 Gene3D G3DSA:2.40.50.320 27 95 9.8E-23 T 12-10-2018 AMJ96_PC00244 a301f231f37f19c0fc71f48739c766b7 95 Pfam PF11604 Copper binding periplasmic protein CusF 30 94 3.9E-25 T 12-10-2018 IPR021647 Copper binding periplasmic protein CusF AMJ96_PB00433 3153feb1746287da1877cfc0fba4626b 313 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 21 311 9.9E-65 T 12-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AMJ96_PB00433 3153feb1746287da1877cfc0fba4626b 313 SMART SM01400 16 133 2.4E-12 T 12-10-2018 AMJ96_PB00433 3153feb1746287da1877cfc0fba4626b 313 Gene3D G3DSA:3.40.50.2020 160 300 2.4E-71 T 12-10-2018 AMJ96_PB00433 3153feb1746287da1877cfc0fba4626b 313 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 16 133 1.6E-19 T 12-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AMJ96_PB00433 3153feb1746287da1877cfc0fba4626b 313 Gene3D G3DSA:3.40.50.2020 25 310 2.4E-71 T 12-10-2018 AMJ96_PB00433 3153feb1746287da1877cfc0fba4626b 313 SUPERFAMILY SSF53271 82 306 7.14E-35 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like AMJ96_PB00433 3153feb1746287da1877cfc0fba4626b 313 Pfam PF00156 Phosphoribosyl transferase domain 166 262 9.1E-15 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMJ96_CH02340 b720b0a6bd36d6f8626f2e358c10de07 254 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 12-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMJ96_CH02340 b720b0a6bd36d6f8626f2e358c10de07 254 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 5 239 5.5E-68 T 12-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 AMJ96_CH02340 b720b0a6bd36d6f8626f2e358c10de07 254 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 238 32.447 T 12-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMJ96_CH02340 b720b0a6bd36d6f8626f2e358c10de07 254 Pfam PF01259 SAICAR synthetase 7 235 8.5E-61 T 12-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMJ96_CH02340 b720b0a6bd36d6f8626f2e358c10de07 254 Gene3D G3DSA:3.30.470.20 85 224 1.8E-96 T 12-10-2018 AMJ96_CH02340 b720b0a6bd36d6f8626f2e358c10de07 254 Gene3D G3DSA:3.30.200.20 7 235 1.8E-96 T 12-10-2018 AMJ96_CH02340 b720b0a6bd36d6f8626f2e358c10de07 254 SUPERFAMILY SSF56104 5 236 7.19E-79 T 12-10-2018 AMJ96_PD00211 34c3532d5f00866a4c1d90ca321707de 155 SUPERFAMILY SSF52402 1 137 7.37E-19 T 12-10-2018 AMJ96_PD00211 34c3532d5f00866a4c1d90ca321707de 155 Pfam PF00582 Universal stress protein family 1 134 1.1E-18 T 12-10-2018 IPR006016 UspA AMJ96_PD00211 34c3532d5f00866a4c1d90ca321707de 155 Gene3D G3DSA:3.40.50.620 1 136 4.7E-18 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH04000 cff1cce375b64744d10a955cf0bec084 248 Gene3D G3DSA:3.40.50.150 13 247 4.5E-73 T 12-10-2018 AMJ96_CH04000 cff1cce375b64744d10a955cf0bec084 248 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 13 241 2.7E-89 T 12-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 AMJ96_CH04000 cff1cce375b64744d10a955cf0bec084 248 SUPERFAMILY SSF53335 15 245 9.09E-44 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH04000 cff1cce375b64744d10a955cf0bec084 248 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 13 247 39.083 T 12-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 AMJ96_CH04000 cff1cce375b64744d10a955cf0bec084 248 Pfam PF13489 Methyltransferase domain 55 216 3.5E-22 T 12-10-2018 AMJ96_CH00749 24c872b31244a8a801c4d6f9b5b0e72a 393 Gene3D G3DSA:2.40.30.10 189 338 3.6E-131 T 12-10-2018 AMJ96_CH00749 24c872b31244a8a801c4d6f9b5b0e72a 393 Pfam PF03486 HI0933-like protein 6 391 2.8E-141 T 12-10-2018 AMJ96_CH00749 24c872b31244a8a801c4d6f9b5b0e72a 393 Gene3D G3DSA:3.50.50.60 7 390 3.6E-131 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH00749 24c872b31244a8a801c4d6f9b5b0e72a 393 SUPERFAMILY SSF160996 190 339 2.75E-35 T 12-10-2018 AMJ96_CH00749 24c872b31244a8a801c4d6f9b5b0e72a 393 SUPERFAMILY SSF51905 4 392 2.73E-58 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH00749 24c872b31244a8a801c4d6f9b5b0e72a 393 Gene3D G3DSA:1.10.8.260 262 321 3.6E-131 T 12-10-2018 IPR023166 HI0933-like insert domain superfamily AMJ96_CH00749 24c872b31244a8a801c4d6f9b5b0e72a 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 3.8E-11 T 12-10-2018 AMJ96_CH00749 24c872b31244a8a801c4d6f9b5b0e72a 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 156 165 3.8E-11 T 12-10-2018 AMJ96_CH00749 24c872b31244a8a801c4d6f9b5b0e72a 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 361 368 3.8E-11 T 12-10-2018 AMJ96_CH00749 24c872b31244a8a801c4d6f9b5b0e72a 393 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 7 390 6.3E-118 T 12-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like AMJ96_CH00749 24c872b31244a8a801c4d6f9b5b0e72a 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 153 171 4.0E-9 T 12-10-2018 AMJ96_CH00749 24c872b31244a8a801c4d6f9b5b0e72a 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 4.0E-9 T 12-10-2018 AMJ96_CH00749 24c872b31244a8a801c4d6f9b5b0e72a 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 346 368 4.0E-9 T 12-10-2018 AMJ96_CH02870 8f2683476b1ba6883ad03d4ee3d41049 270 SUPERFAMILY SSF81345 3 256 3.53E-35 T 12-10-2018 IPR037294 ABC transporter, BtuC-like AMJ96_CH02870 8f2683476b1ba6883ad03d4ee3d41049 270 Gene3D G3DSA:1.10.3470.10 29 265 2.0E-6 T 12-10-2018 IPR037294 ABC transporter, BtuC-like AMJ96_CH02870 8f2683476b1ba6883ad03d4ee3d41049 270 Pfam PF00950 ABC 3 transport family 4 256 6.6E-68 T 12-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 AMJ96_CH00817 070123dc3548a947aad148e2310cafe1 329 Gene3D G3DSA:3.60.15.10 39 328 1.6E-82 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH00817 070123dc3548a947aad148e2310cafe1 329 SUPERFAMILY SSF56281 42 323 5.01E-45 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH00817 070123dc3548a947aad148e2310cafe1 329 SMART SM00849 101 302 1.7E-21 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH00817 070123dc3548a947aad148e2310cafe1 329 Pfam PF00753 Metallo-beta-lactamase superfamily 106 289 2.2E-20 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_PC00160 a9f63036b56fa4dec2d5242d09eb3822 288 SUPERFAMILY SSF51735 3 237 8.27E-43 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00160 a9f63036b56fa4dec2d5242d09eb3822 288 Pfam PF05368 NmrA-like family 3 224 1.5E-15 T 12-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 AMJ96_PC00160 a9f63036b56fa4dec2d5242d09eb3822 288 Gene3D G3DSA:3.90.25.10 141 245 5.4E-53 T 12-10-2018 AMJ96_PC00160 a9f63036b56fa4dec2d5242d09eb3822 288 Gene3D G3DSA:3.40.50.720 3 199 5.4E-53 T 12-10-2018 AMJ96_CH03480 19d4cc3256b49aadad10ab5efec55ae2 311 Pfam PF01965 DJ-1/PfpI family 29 165 3.2E-15 T 12-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 AMJ96_CH03480 19d4cc3256b49aadad10ab5efec55ae2 311 Pfam PF12833 Helix-turn-helix domain 228 307 1.2E-21 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH03480 19d4cc3256b49aadad10ab5efec55ae2 311 Gene3D G3DSA:1.10.10.60 207 310 5.6E-23 T 12-10-2018 AMJ96_CH03480 19d4cc3256b49aadad10ab5efec55ae2 311 SUPERFAMILY SSF52317 1 187 1.07E-44 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH03480 19d4cc3256b49aadad10ab5efec55ae2 311 SMART SM00342 224 306 3.8E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH03480 19d4cc3256b49aadad10ab5efec55ae2 311 Gene3D G3DSA:3.40.50.880 1 199 1.4E-51 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH03480 19d4cc3256b49aadad10ab5efec55ae2 311 SUPERFAMILY SSF46689 207 256 6.81E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03480 19d4cc3256b49aadad10ab5efec55ae2 311 SUPERFAMILY SSF46689 259 309 6.72E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PC00255 d3ceedd0b12e098ff0925f2e0c84499d 419 SUPERFAMILY SSF53850 21 411 2.08E-83 T 12-10-2018 AMJ96_PC00255 d3ceedd0b12e098ff0925f2e0c84499d 419 Gene3D G3DSA:3.40.190.10 40 369 4.1E-78 T 12-10-2018 AMJ96_PC00255 d3ceedd0b12e098ff0925f2e0c84499d 419 Gene3D G3DSA:3.40.190.10 139 404 4.1E-78 T 12-10-2018 AMJ96_PC00255 d3ceedd0b12e098ff0925f2e0c84499d 419 Pfam PF01547 Bacterial extracellular solute-binding protein 34 324 2.2E-45 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH02321 e2f304973622138ead6377053a30b002 553 SUPERFAMILY SSF51011 460 541 1.62E-7 T 12-10-2018 AMJ96_CH02321 e2f304973622138ead6377053a30b002 553 PRINTS PR00110 Alpha-amylase signature 93 104 1.0E-4 T 12-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 AMJ96_CH02321 e2f304973622138ead6377053a30b002 553 PRINTS PR00110 Alpha-amylase signature 195 206 1.0E-4 T 12-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 AMJ96_CH02321 e2f304973622138ead6377053a30b002 553 PRINTS PR00110 Alpha-amylase signature 300 312 1.0E-4 T 12-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 AMJ96_CH02321 e2f304973622138ead6377053a30b002 553 Gene3D G3DSA:3.90.400.10 104 173 3.6E-185 T 12-10-2018 AMJ96_CH02321 e2f304973622138ead6377053a30b002 553 Gene3D G3DSA:3.20.20.80 6 454 3.6E-185 T 12-10-2018 AMJ96_CH02321 e2f304973622138ead6377053a30b002 553 SMART SM00642 14 418 4.6E-86 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_CH02321 e2f304973622138ead6377053a30b002 553 SUPERFAMILY SSF51445 20 460 2.94E-110 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH02321 e2f304973622138ead6377053a30b002 553 Pfam PF00128 Alpha amylase, catalytic domain 29 383 1.8E-70 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_PC00108 9fc4231dccab173983bcc9f7f71f09c0 555 SUPERFAMILY SSF52540 25 276 8.21E-69 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00108 9fc4231dccab173983bcc9f7f71f09c0 555 Pfam PF00005 ABC transporter 45 204 1.3E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00108 9fc4231dccab173983bcc9f7f71f09c0 555 ProSitePatterns PS00211 ABC transporters family signature. 177 191 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00108 9fc4231dccab173983bcc9f7f71f09c0 555 Gene3D G3DSA:3.40.50.300 293 555 1.3E-82 T 12-10-2018 AMJ96_PC00108 9fc4231dccab173983bcc9f7f71f09c0 555 Gene3D G3DSA:3.40.50.300 23 292 1.7E-85 T 12-10-2018 AMJ96_PC00108 9fc4231dccab173983bcc9f7f71f09c0 555 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 527 554 0.064 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PC00108 9fc4231dccab173983bcc9f7f71f09c0 555 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 258 284 0.0058 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PC00108 9fc4231dccab173983bcc9f7f71f09c0 555 ProSitePatterns PS00211 ABC transporters family signature. 448 462 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00108 9fc4231dccab173983bcc9f7f71f09c0 555 SMART SM00382 54 254 3.0E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00108 9fc4231dccab173983bcc9f7f71f09c0 555 SMART SM00382 332 525 2.1E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00108 9fc4231dccab173983bcc9f7f71f09c0 555 Pfam PF00005 ABC transporter 324 476 3.7E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00108 9fc4231dccab173983bcc9f7f71f09c0 555 SUPERFAMILY SSF52540 318 546 6.23E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04223 e11efb53f46853f84e265a8c18c15d60 294 SUPERFAMILY SSF54637 122 290 8.82E-59 T 12-10-2018 IPR029069 HotDog domain superfamily AMJ96_CH04223 e11efb53f46853f84e265a8c18c15d60 294 Pfam PF13622 Thioesterase-like superfamily 37 288 1.4E-58 T 12-10-2018 AMJ96_CH04223 e11efb53f46853f84e265a8c18c15d60 294 SUPERFAMILY SSF54637 11 120 1.94E-40 T 12-10-2018 IPR029069 HotDog domain superfamily AMJ96_CH04223 e11efb53f46853f84e265a8c18c15d60 294 Gene3D G3DSA:3.10.129.90 9 293 8.9E-107 T 12-10-2018 AMJ96_CH04223 e11efb53f46853f84e265a8c18c15d60 294 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 18 289 2.4E-97 T 12-10-2018 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 AMJ96_CH04191 2e07d0db4fc203d220c60ad7acae89c1 896 SUPERFAMILY SSF52016 632 893 1.28E-81 T 12-10-2018 AMJ96_CH04191 2e07d0db4fc203d220c60ad7acae89c1 896 ProSitePatterns PS00450 Aconitase family signature 1. 429 445 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMJ96_CH04191 2e07d0db4fc203d220c60ad7acae89c1 896 Gene3D G3DSA:3.30.499.10 377 592 1.7E-93 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 AMJ96_CH04191 2e07d0db4fc203d220c60ad7acae89c1 896 Gene3D G3DSA:3.20.19.10 657 896 7.6E-98 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 AMJ96_CH04191 2e07d0db4fc203d220c60ad7acae89c1 896 Gene3D G3DSA:1.10.1440.20 593 653 5.0E-20 T 12-10-2018 AMJ96_CH04191 2e07d0db4fc203d220c60ad7acae89c1 896 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 20 894 0.0 T 12-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 AMJ96_CH04191 2e07d0db4fc203d220c60ad7acae89c1 896 SUPERFAMILY SSF53732 5 629 5.49E-225 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 AMJ96_CH04191 2e07d0db4fc203d220c60ad7acae89c1 896 PRINTS PR00415 Aconitase family signature 173 181 1.2E-39 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMJ96_CH04191 2e07d0db4fc203d220c60ad7acae89c1 896 PRINTS PR00415 Aconitase family signature 149 162 1.2E-39 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMJ96_CH04191 2e07d0db4fc203d220c60ad7acae89c1 896 PRINTS PR00415 Aconitase family signature 376 390 1.2E-39 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMJ96_CH04191 2e07d0db4fc203d220c60ad7acae89c1 896 PRINTS PR00415 Aconitase family signature 433 444 1.2E-39 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMJ96_CH04191 2e07d0db4fc203d220c60ad7acae89c1 896 PRINTS PR00415 Aconitase family signature 495 508 1.2E-39 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMJ96_CH04191 2e07d0db4fc203d220c60ad7acae89c1 896 PRINTS PR00415 Aconitase family signature 206 219 1.2E-39 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMJ96_CH04191 2e07d0db4fc203d220c60ad7acae89c1 896 PRINTS PR00415 Aconitase family signature 220 235 1.2E-39 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMJ96_CH04191 2e07d0db4fc203d220c60ad7acae89c1 896 PRINTS PR00415 Aconitase family signature 282 295 1.2E-39 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMJ96_CH04191 2e07d0db4fc203d220c60ad7acae89c1 896 PRINTS PR00415 Aconitase family signature 296 309 1.2E-39 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMJ96_CH04191 2e07d0db4fc203d220c60ad7acae89c1 896 Pfam PF00330 Aconitase family (aconitate hydratase) 77 564 4.8E-183 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 AMJ96_CH04191 2e07d0db4fc203d220c60ad7acae89c1 896 Pfam PF00694 Aconitase C-terminal domain 695 823 1.2E-41 T 12-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 AMJ96_CH04191 2e07d0db4fc203d220c60ad7acae89c1 896 Gene3D G3DSA:3.30.499.20 8 376 1.2E-161 T 12-10-2018 AMJ96_CH04191 2e07d0db4fc203d220c60ad7acae89c1 896 ProSitePatterns PS01244 Aconitase family signature 2. 495 508 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AMJ96_PC00226 db1a93e8159e988352adbc0b626a1581 191 Gene3D G3DSA:1.20.1290.10 75 191 7.7E-34 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_PC00226 db1a93e8159e988352adbc0b626a1581 191 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 74 102 8.1E-8 T 12-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMJ96_PC00226 db1a93e8159e988352adbc0b626a1581 191 SUPERFAMILY SSF69118 12 189 4.32E-40 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_PC00226 db1a93e8159e988352adbc0b626a1581 191 Pfam PF02627 Carboxymuconolactone decarboxylase family 57 121 3.3E-10 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMJ96_PC00226 db1a93e8159e988352adbc0b626a1581 191 TIGRFAM TIGR01926 peroxid_rel: uncharacterized peroxidase-related enzyme 17 190 1.2E-54 T 12-10-2018 IPR010195 Uncharacterised peroxidase-related AMJ96_PB00288 91a6f5b94ec0ecd16b27bf816a2044f4 500 SUPERFAMILY SSF53807 48 488 1.42E-163 T 12-10-2018 AMJ96_PB00288 91a6f5b94ec0ecd16b27bf816a2044f4 500 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 91 98 - T 12-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 AMJ96_PB00288 91a6f5b94ec0ecd16b27bf816a2044f4 500 Gene3D G3DSA:3.40.50.1980 73 215 3.0E-260 T 12-10-2018 AMJ96_PB00288 91a6f5b94ec0ecd16b27bf816a2044f4 500 TIGRFAM TIGR01282 nifD: nitrogenase molybdenum-iron protein alpha chain 15 487 2.4E-259 T 12-10-2018 IPR005972 Nitrogenase molybdenum-iron protein alpha chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 AMJ96_PB00288 91a6f5b94ec0ecd16b27bf816a2044f4 500 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 162 176 - T 12-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 AMJ96_PB00288 91a6f5b94ec0ecd16b27bf816a2044f4 500 TIGRFAM TIGR01862 N2-ase-Ialpha: nitrogenase component I, alpha chain 31 482 4.8E-186 T 12-10-2018 IPR010143 Nitrogenase component 1, alpha chain GO:0009399|GO:0016163|GO:0051536|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 AMJ96_PB00288 91a6f5b94ec0ecd16b27bf816a2044f4 500 Gene3D G3DSA:3.40.50.1980 216 328 3.0E-260 T 12-10-2018 AMJ96_PB00288 91a6f5b94ec0ecd16b27bf816a2044f4 500 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 72 474 2.3E-110 T 12-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 AMJ96_PB00288 91a6f5b94ec0ecd16b27bf816a2044f4 500 Gene3D G3DSA:3.40.50.1980 15 487 3.0E-260 T 12-10-2018 AMJ96_PB00390 91a6f5b94ec0ecd16b27bf816a2044f4 500 SUPERFAMILY SSF53807 48 488 1.42E-163 T 12-10-2018 AMJ96_PB00390 91a6f5b94ec0ecd16b27bf816a2044f4 500 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 91 98 - T 12-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 AMJ96_PB00390 91a6f5b94ec0ecd16b27bf816a2044f4 500 Gene3D G3DSA:3.40.50.1980 73 215 3.0E-260 T 12-10-2018 AMJ96_PB00390 91a6f5b94ec0ecd16b27bf816a2044f4 500 TIGRFAM TIGR01282 nifD: nitrogenase molybdenum-iron protein alpha chain 15 487 2.4E-259 T 12-10-2018 IPR005972 Nitrogenase molybdenum-iron protein alpha chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 AMJ96_PB00390 91a6f5b94ec0ecd16b27bf816a2044f4 500 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 162 176 - T 12-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 AMJ96_PB00390 91a6f5b94ec0ecd16b27bf816a2044f4 500 TIGRFAM TIGR01862 N2-ase-Ialpha: nitrogenase component I, alpha chain 31 482 4.8E-186 T 12-10-2018 IPR010143 Nitrogenase component 1, alpha chain GO:0009399|GO:0016163|GO:0051536|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 AMJ96_PB00390 91a6f5b94ec0ecd16b27bf816a2044f4 500 Gene3D G3DSA:3.40.50.1980 216 328 3.0E-260 T 12-10-2018 AMJ96_PB00390 91a6f5b94ec0ecd16b27bf816a2044f4 500 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 72 474 2.3E-110 T 12-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 AMJ96_PB00390 91a6f5b94ec0ecd16b27bf816a2044f4 500 Gene3D G3DSA:3.40.50.1980 15 487 3.0E-260 T 12-10-2018 AMJ96_CH00023 28147add9b8afabaae31b06378454d5a 301 Pfam PF01039 Carboxyl transferase domain 106 242 1.4E-16 T 12-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 AMJ96_CH00023 28147add9b8afabaae31b06378454d5a 301 SUPERFAMILY SSF52096 25 283 3.4E-76 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_CH00023 28147add9b8afabaae31b06378454d5a 301 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 15 283 9.8E-104 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMJ96_CH00023 28147add9b8afabaae31b06378454d5a 301 Gene3D G3DSA:3.90.226.10 25 287 1.8E-75 T 12-10-2018 AMJ96_CH00023 28147add9b8afabaae31b06378454d5a 301 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 181 1.1E-37 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMJ96_CH00023 28147add9b8afabaae31b06378454d5a 301 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 251 260 1.1E-37 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMJ96_CH00023 28147add9b8afabaae31b06378454d5a 301 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 129 143 1.1E-37 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMJ96_CH00023 28147add9b8afabaae31b06378454d5a 301 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 229 240 1.1E-37 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMJ96_CH00023 28147add9b8afabaae31b06378454d5a 301 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 200 217 1.1E-37 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMJ96_CH00023 28147add9b8afabaae31b06378454d5a 301 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 5 281 35.966 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 Gene3D G3DSA:3.30.70.1430 40 829 0.0 T 12-10-2018 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 SUPERFAMILY SSF82693 685 869 7.32E-23 T 12-10-2018 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 Gene3D G3DSA:1.20.1640.10 10 521 0.0 T 12-10-2018 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 Gene3D G3DSA:3.30.70.1320 135 335 0.0 T 12-10-2018 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 SUPERFAMILY SSF82866 299 499 4.19E-51 T 12-10-2018 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3 1049 0.0 T 12-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 Gene3D G3DSA:3.30.70.1440 681 878 0.0 T 12-10-2018 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 SUPERFAMILY SSF82693 137 333 6.28E-28 T 12-10-2018 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 Gene3D G3DSA:1.20.1640.10 522 1035 0.0 T 12-10-2018 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 Gene3D G3DSA:3.30.2090.10 733 821 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 SUPERFAMILY SSF82714 734 819 4.19E-19 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 SUPERFAMILY SSF82714 185 275 4.97E-23 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 SUPERFAMILY SSF82693 40 134 2.28E-27 T 12-10-2018 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 PRINTS PR00702 Acriflavin resistance protein family signature 633 647 4.1E-91 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 4.1E-91 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 PRINTS PR00702 Acriflavin resistance protein family signature 564 581 4.1E-91 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 4.1E-91 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 4.1E-91 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 4.1E-91 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 4.1E-91 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 4.1E-91 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 4.1E-91 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 Gene3D G3DSA:3.30.2090.10 181 278 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 SUPERFAMILY SSF82866 843 1038 5.36E-47 T 12-10-2018 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 Gene3D G3DSA:3.30.70.1430 579 680 0.0 T 12-10-2018 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 Pfam PF00873 AcrB/AcrD/AcrF family 4 1038 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03576 6c27ab9c3f033429567bc0446130e7fa 1061 SUPERFAMILY SSF82693 578 683 1.03E-25 T 12-10-2018 AMJ96_CH03781 3b084b71a0e84717cb9cd68caead34f5 578 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 35 547 1.5E-168 T 12-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 AMJ96_CH03781 3b084b71a0e84717cb9cd68caead34f5 578 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 375 399 - T 12-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 AMJ96_CH03781 3b084b71a0e84717cb9cd68caead34f5 578 Gene3D G3DSA:1.10.246.130 263 375 3.2E-39 T 12-10-2018 AMJ96_CH03781 3b084b71a0e84717cb9cd68caead34f5 578 SUPERFAMILY SSF56235 28 548 1.02E-176 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMJ96_CH03781 3b084b71a0e84717cb9cd68caead34f5 578 Pfam PF01019 Gamma-glutamyltranspeptidase 50 544 1.6E-171 T 12-10-2018 AMJ96_CH03781 3b084b71a0e84717cb9cd68caead34f5 578 Gene3D G3DSA:3.60.20.40 376 571 5.1E-68 T 12-10-2018 AMJ96_CH03781 3b084b71a0e84717cb9cd68caead34f5 578 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 247 263 1.9E-76 T 12-10-2018 AMJ96_CH03781 3b084b71a0e84717cb9cd68caead34f5 578 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 57 82 1.9E-76 T 12-10-2018 AMJ96_CH03781 3b084b71a0e84717cb9cd68caead34f5 578 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 375 393 1.9E-76 T 12-10-2018 AMJ96_CH03781 3b084b71a0e84717cb9cd68caead34f5 578 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 130 148 1.9E-76 T 12-10-2018 AMJ96_CH03781 3b084b71a0e84717cb9cd68caead34f5 578 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 440 455 1.9E-76 T 12-10-2018 AMJ96_CH03781 3b084b71a0e84717cb9cd68caead34f5 578 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 277 296 1.9E-76 T 12-10-2018 AMJ96_CH03781 3b084b71a0e84717cb9cd68caead34f5 578 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 464 481 1.9E-76 T 12-10-2018 AMJ96_CH03781 3b084b71a0e84717cb9cd68caead34f5 578 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 148 167 1.9E-76 T 12-10-2018 AMJ96_CH03781 3b084b71a0e84717cb9cd68caead34f5 578 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 399 417 1.9E-76 T 12-10-2018 AMJ96_CH01779 fb40b3f260446a35f5c65523bb01bed7 462 SMART SM00387 367 459 1.2E-4 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH01779 fb40b3f260446a35f5c65523bb01bed7 462 Gene3D G3DSA:3.30.565.10 338 456 1.4E-25 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH01779 fb40b3f260446a35f5c65523bb01bed7 462 Pfam PF07730 Histidine kinase 265 325 5.5E-6 T 12-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMJ96_CH01779 fb40b3f260446a35f5c65523bb01bed7 462 SUPERFAMILY SSF55874 334 455 2.1E-14 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PD00494 306ff529dfaf7168c9330e71dc453af8 333 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 28 312 2.2E-67 T 12-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 AMJ96_PD00494 306ff529dfaf7168c9330e71dc453af8 333 Gene3D G3DSA:3.40.190.100 113 243 1.0E-31 T 12-10-2018 AMJ96_PD00494 306ff529dfaf7168c9330e71dc453af8 333 SUPERFAMILY SSF53850 21 328 8.55E-76 T 12-10-2018 AMJ96_PD00494 306ff529dfaf7168c9330e71dc453af8 333 Gene3D G3DSA:3.10.105.10 255 332 6.0E-7 T 12-10-2018 AMJ96_CH01487 59ef8b877e31915e8ed69db2d59e6275 498 Pfam PF00772 DnaB-like helicase N terminal domain 21 122 8.5E-26 T 12-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 AMJ96_CH01487 59ef8b877e31915e8ed69db2d59e6275 498 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 21 488 2.6E-152 T 12-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 AMJ96_CH01487 59ef8b877e31915e8ed69db2d59e6275 498 SUPERFAMILY SSF48024 19 130 5.49E-29 T 12-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 AMJ96_CH01487 59ef8b877e31915e8ed69db2d59e6275 498 SUPERFAMILY SSF52540 197 478 4.66E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01487 59ef8b877e31915e8ed69db2d59e6275 498 Pfam PF03796 DnaB-like helicase C terminal domain 199 486 3.6E-101 T 12-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 AMJ96_CH01487 59ef8b877e31915e8ed69db2d59e6275 498 Gene3D G3DSA:1.10.860.10 14 180 2.1E-36 T 12-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal AMJ96_CH01487 59ef8b877e31915e8ed69db2d59e6275 498 SMART SM00382 216 435 3.0E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01487 59ef8b877e31915e8ed69db2d59e6275 498 Gene3D G3DSA:3.40.50.300 183 491 6.6E-103 T 12-10-2018 AMJ96_PC00190 193614388db5b4c59a149d98f3707b0a 469 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 7 434 1.2E-162 T 12-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AMJ96_PC00190 193614388db5b4c59a149d98f3707b0a 469 Gene3D G3DSA:3.20.20.30 1 458 4.6E-142 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_PC00190 193614388db5b4c59a149d98f3707b0a 469 PIRSF PIRSF000337 2 448 8.2E-135 T 12-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AMJ96_PC00190 193614388db5b4c59a149d98f3707b0a 469 SUPERFAMILY SSF51679 1 440 2.22E-121 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_PC00190 193614388db5b4c59a149d98f3707b0a 469 Pfam PF00296 Luciferase-like monooxygenase 30 387 3.7E-51 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMJ96_CH03058 eb2c4e6037f428a84313e7a0e72e4894 520 Pfam PF13520 Amino acid permease 31 474 1.6E-45 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03058 eb2c4e6037f428a84313e7a0e72e4894 520 Gene3D G3DSA:1.20.1740.10 27 494 2.4E-23 T 12-10-2018 AMJ96_CH03058 eb2c4e6037f428a84313e7a0e72e4894 520 PIRSF PIRSF006060 9 511 1.7E-45 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 AMJ96_CH00303 e52e8644ca2f8ba53b605374fd7499a5 298 Gene3D G3DSA:1.10.10.10 2 87 9.4E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00303 e52e8644ca2f8ba53b605374fd7499a5 298 SUPERFAMILY SSF53850 91 295 3.8E-38 T 12-10-2018 AMJ96_CH00303 e52e8644ca2f8ba53b605374fd7499a5 298 SUPERFAMILY SSF46785 4 88 1.77E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00303 e52e8644ca2f8ba53b605374fd7499a5 298 Pfam PF03466 LysR substrate binding domain 89 295 2.5E-34 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH00303 e52e8644ca2f8ba53b605374fd7499a5 298 Gene3D G3DSA:3.40.190.10 92 292 9.0E-49 T 12-10-2018 AMJ96_CH00303 e52e8644ca2f8ba53b605374fd7499a5 298 Gene3D G3DSA:3.40.190.10 165 268 9.0E-49 T 12-10-2018 AMJ96_CH00303 e52e8644ca2f8ba53b605374fd7499a5 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 1.2E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00456 e6ae1f5c710c0d6735be76537c56e4cb 342 Gene3D G3DSA:1.10.260.40 1 47 1.9E-16 T 12-10-2018 AMJ96_PC00456 e6ae1f5c710c0d6735be76537c56e4cb 342 Gene3D G3DSA:3.40.50.2300 83 168 3.9E-31 T 12-10-2018 AMJ96_PC00456 e6ae1f5c710c0d6735be76537c56e4cb 342 SUPERFAMILY SSF53822 65 334 1.2E-33 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PC00456 e6ae1f5c710c0d6735be76537c56e4cb 342 Gene3D G3DSA:3.40.50.2300 169 301 3.9E-31 T 12-10-2018 AMJ96_PC00456 e6ae1f5c710c0d6735be76537c56e4cb 342 Pfam PF13407 Periplasmic binding protein domain 68 320 4.7E-30 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_PC00456 e6ae1f5c710c0d6735be76537c56e4cb 342 ProSitePatterns PS00356 LacI-type HTH domain signature. 6 24 - T 12-10-2018 AMJ96_PC00456 e6ae1f5c710c0d6735be76537c56e4cb 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 48 4.8E-14 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PC00456 e6ae1f5c710c0d6735be76537c56e4cb 342 SMART SM00354 3 59 5.0E-7 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PC00456 e6ae1f5c710c0d6735be76537c56e4cb 342 SUPERFAMILY SSF47413 2 48 3.84E-13 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH00196 7ff26ecad071f6a9d5583e8715eaca40 323 Pfam PF02653 Branched-chain amino acid transport system / permease component 11 298 7.9E-38 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_PD00480 33c4054d0f1632c50744a4f1258c9e09 505 SUPERFAMILY SSF53720 17 495 9.42E-162 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_PD00480 33c4054d0f1632c50744a4f1258c9e09 505 Gene3D G3DSA:3.40.605.10 25 489 2.4E-170 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_PD00480 33c4054d0f1632c50744a4f1258c9e09 505 Gene3D G3DSA:3.40.309.10 272 460 2.4E-170 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_PD00480 33c4054d0f1632c50744a4f1258c9e09 505 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 296 307 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMJ96_PD00480 33c4054d0f1632c50744a4f1258c9e09 505 Pfam PF00171 Aldehyde dehydrogenase family 32 491 1.9E-166 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_PD00480 33c4054d0f1632c50744a4f1258c9e09 505 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 267 274 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMJ96_CH00857 2111a585c6e7a14a6d3f45ea3a9fe3cd 656 Pfam PF01479 S4 domain 52 98 3.2E-8 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH00857 2111a585c6e7a14a6d3f45ea3a9fe3cd 656 Gene3D G3DSA:3.30.70.1560 174 264 3.6E-46 T 12-10-2018 AMJ96_CH00857 2111a585c6e7a14a6d3f45ea3a9fe3cd 656 Pfam PF00849 RNA pseudouridylate synthase 113 195 1.3E-8 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH00857 2111a585c6e7a14a6d3f45ea3a9fe3cd 656 SUPERFAMILY SSF55174 50 117 3.53E-11 T 12-10-2018 AMJ96_CH00857 2111a585c6e7a14a6d3f45ea3a9fe3cd 656 Gene3D G3DSA:3.30.70.580 115 270 3.6E-46 T 12-10-2018 AMJ96_CH00857 2111a585c6e7a14a6d3f45ea3a9fe3cd 656 Gene3D G3DSA:3.10.290.10 47 106 6.2E-18 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMJ96_CH00857 2111a585c6e7a14a6d3f45ea3a9fe3cd 656 SUPERFAMILY SSF55120 110 275 4.32E-36 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH00857 2111a585c6e7a14a6d3f45ea3a9fe3cd 656 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 150 164 - T 12-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 AMJ96_CH00857 2111a585c6e7a14a6d3f45ea3a9fe3cd 656 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 117 271 5.2E-35 T 12-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 AMJ96_CH00857 2111a585c6e7a14a6d3f45ea3a9fe3cd 656 SMART SM00363 52 109 3.3E-8 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_PC00038 43b43c07db50f67c17939c388ae88d37 415 Pfam PF00534 Glycosyl transferases group 1 225 388 4.3E-32 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 AMJ96_PC00038 43b43c07db50f67c17939c388ae88d37 415 Gene3D G3DSA:3.40.50.2000 20 405 3.4E-49 T 12-10-2018 AMJ96_PC00038 43b43c07db50f67c17939c388ae88d37 415 Gene3D G3DSA:3.40.50.2000 205 390 3.4E-49 T 12-10-2018 AMJ96_PC00038 43b43c07db50f67c17939c388ae88d37 415 SUPERFAMILY SSF53756 19 408 6.28E-60 T 12-10-2018 AMJ96_CH02457 72e9724a3bc8daf21662aadb31984558 316 Gene3D G3DSA:1.10.10.60 1 53 9.5E-16 T 12-10-2018 AMJ96_CH02457 72e9724a3bc8daf21662aadb31984558 316 Pfam PF12802 MarR family 20 54 1.8E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH02457 72e9724a3bc8daf21662aadb31984558 316 SUPERFAMILY SSF46689 9 65 6.09E-5 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02457 72e9724a3bc8daf21662aadb31984558 316 SUPERFAMILY SSF100950 62 314 1.02E-65 T 12-10-2018 IPR037171 NagB/RpiA transferase-like AMJ96_CH02457 72e9724a3bc8daf21662aadb31984558 316 Pfam PF04198 Putative sugar-binding domain 61 315 6.1E-66 T 12-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 AMJ96_CH02457 72e9724a3bc8daf21662aadb31984558 316 Gene3D G3DSA:3.40.50.1360 54 315 6.6E-81 T 12-10-2018 AMJ96_CH04146 6924494c71bae7129b8a22570b0fef29 126 Gene3D G3DSA:1.20.1300.10 11 122 7.9E-26 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH04146 6924494c71bae7129b8a22570b0fef29 126 SUPERFAMILY SSF81343 11 122 4.58E-29 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH04146 6924494c71bae7129b8a22570b0fef29 126 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 1 112 2.7E-15 T 12-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH04146 6924494c71bae7129b8a22570b0fef29 126 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 16 120 2.0E-28 T 12-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 AMJ96_CH02960 42b8c77d8185aeb0f7868b8136eaa8c5 296 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 76 285 1.5E-65 T 12-10-2018 AMJ96_CH02960 42b8c77d8185aeb0f7868b8136eaa8c5 296 Gene3D G3DSA:3.40.50.1000 20 286 1.3E-70 T 12-10-2018 IPR023214 HAD superfamily AMJ96_CH02960 42b8c77d8185aeb0f7868b8136eaa8c5 296 SUPERFAMILY SSF56784 78 285 3.34E-46 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_CH02960 42b8c77d8185aeb0f7868b8136eaa8c5 296 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 82 254 2.2E-34 T 12-10-2018 AMJ96_CH02960 42b8c77d8185aeb0f7868b8136eaa8c5 296 Pfam PF12710 haloacid dehalogenase-like hydrolase 84 252 2.1E-18 T 12-10-2018 AMJ96_CH03018 304b701be9a72520c03dcf686f006c01 366 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 24 364 23.976 T 12-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH03018 304b701be9a72520c03dcf686f006c01 366 Pfam PF00953 Glycosyl transferase family 4 100 289 3.2E-30 T 12-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 AMJ96_CH03018 304b701be9a72520c03dcf686f006c01 366 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 1.8E-5 T 12-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH03018 304b701be9a72520c03dcf686f006c01 366 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 38 366 2.3E-119 T 12-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH03018 304b701be9a72520c03dcf686f006c01 366 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 12-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH03018 304b701be9a72520c03dcf686f006c01 366 ProSitePatterns PS01348 MraY family signature 2. 195 206 - T 12-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH04221 d005cc12d0a314e765ce9c22a8d7056f 475 TIGRFAM TIGR00836 amt: ammonium transporter 49 472 3.9E-129 T 12-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 AMJ96_CH04221 d005cc12d0a314e765ce9c22a8d7056f 475 Gene3D G3DSA:1.10.3430.10 23 475 6.1E-135 T 12-10-2018 IPR029020 Ammonium/urea transporter AMJ96_CH04221 d005cc12d0a314e765ce9c22a8d7056f 475 SUPERFAMILY SSF111352 45 453 2.09E-124 T 12-10-2018 AMJ96_CH04221 d005cc12d0a314e765ce9c22a8d7056f 475 ProSitePatterns PS01219 Ammonium transporters signature. 219 244 - T 12-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 AMJ96_CH04221 d005cc12d0a314e765ce9c22a8d7056f 475 Pfam PF00909 Ammonium Transporter Family 52 472 8.0E-114 T 12-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 AMJ96_PB00089 de11b6c428cf3f303713eca615a8d8f1 219 Pfam PF06226 Protein of unknown function (DUF1007) 16 219 1.7E-50 T 12-10-2018 IPR010412 Protein of unknown function DUF1007 AMJ96_PB00089 de11b6c428cf3f303713eca615a8d8f1 219 PIRSF PIRSF008159 4 219 4.2E-61 T 12-10-2018 IPR016537 Uncharacterised conserved protein UCP008159, AMJ96_PB00089 de11b6c428cf3f303713eca615a8d8f1 219 ProSitePatterns PS00018 EF-hand calcium-binding domain. 69 81 - T 12-10-2018 IPR018247 EF-Hand 1, calcium-binding site AMJ96_CH03888 605125ac953ffa3a0e4288c38e99f4fa 212 Gene3D G3DSA:3.20.20.70 1 211 2.6E-70 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH03888 605125ac953ffa3a0e4288c38e99f4fa 212 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 128 141 - T 12-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AMJ96_CH03888 605125ac953ffa3a0e4288c38e99f4fa 212 Pfam PF01081 KDPG and KHG aldolase 10 203 1.6E-66 T 12-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AMJ96_CH03888 605125ac953ffa3a0e4288c38e99f4fa 212 SUPERFAMILY SSF51569 5 209 3.3E-65 T 12-10-2018 AMJ96_CH03888 605125ac953ffa3a0e4288c38e99f4fa 212 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 10 209 5.8E-72 T 12-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AMJ96_CH00632 c224a1c6a79111d7287553a92f56efea 295 Pfam PF05114 Protein of unknown function (DUF692) 15 280 1.4E-105 T 12-10-2018 IPR007801 Uncharacterised protein family UPF0276 AMJ96_CH00632 c224a1c6a79111d7287553a92f56efea 295 SUPERFAMILY SSF51658 38 229 6.21E-8 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_CH00632 c224a1c6a79111d7287553a92f56efea 295 Gene3D G3DSA:3.20.20.150 13 289 1.2E-88 T 12-10-2018 AMJ96_CH00632 c224a1c6a79111d7287553a92f56efea 295 Hamap MF_00697 UPF0276 protein . 15 288 45.722 T 12-10-2018 IPR007801 Uncharacterised protein family UPF0276 AMJ96_CH02292 46853cbf1532f3d9cb9e0e801227274e 510 SUPERFAMILY SSF52096 4 249 6.59E-76 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_CH02292 46853cbf1532f3d9cb9e0e801227274e 510 Gene3D G3DSA:3.90.226.10 259 510 4.2E-92 T 12-10-2018 AMJ96_CH02292 46853cbf1532f3d9cb9e0e801227274e 510 SUPERFAMILY SSF52096 267 510 3.08E-88 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_CH02292 46853cbf1532f3d9cb9e0e801227274e 510 Gene3D G3DSA:3.90.226.10 1 255 3.3E-90 T 12-10-2018 AMJ96_CH02292 46853cbf1532f3d9cb9e0e801227274e 510 Pfam PF01039 Carboxyl transferase domain 27 508 1.7E-185 T 12-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 AMJ96_CH03196 690bd21a6758a676727db7a550436862 426 PIRSF PIRSF038885 5 414 1.7E-195 T 12-10-2018 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 AMJ96_CH03196 690bd21a6758a676727db7a550436862 426 SUPERFAMILY SSF81648 278 404 2.62E-42 T 12-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 AMJ96_CH03196 690bd21a6758a676727db7a550436862 426 SUPERFAMILY SSF81342 21 277 5.18E-102 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AMJ96_CH03196 690bd21a6758a676727db7a550436862 426 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 275 383 3.1E-44 T 12-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 AMJ96_CH03196 690bd21a6758a676727db7a550436862 426 Gene3D G3DSA:1.20.810.10 2 426 5.7E-168 T 12-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 AMJ96_CH03196 690bd21a6758a676727db7a550436862 426 Pfam PF00033 Cytochrome b/b6/petB 32 219 7.3E-72 T 12-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 AMJ96_CH01327 0503b78573f6e91a15a15d3ed11b7587 467 Gene3D G3DSA:1.10.287.130 195 295 9.6E-9 T 12-10-2018 AMJ96_CH01327 0503b78573f6e91a15a15d3ed11b7587 467 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 347 451 5.1E-10 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH01327 0503b78573f6e91a15a15d3ed11b7587 467 Gene3D G3DSA:3.30.565.10 310 464 1.8E-23 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH01327 0503b78573f6e91a15a15d3ed11b7587 467 SUPERFAMILY SSF47384 228 301 2.16E-5 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH01327 0503b78573f6e91a15a15d3ed11b7587 467 SUPERFAMILY SSF55874 308 462 4.06E-22 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH01327 0503b78573f6e91a15a15d3ed11b7587 467 SMART SM00388 245 302 0.001 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH01327 0503b78573f6e91a15a15d3ed11b7587 467 SMART SM00387 345 463 1.9E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH01327 0503b78573f6e91a15a15d3ed11b7587 467 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 406 4.7E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH01327 0503b78573f6e91a15a15d3ed11b7587 467 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 441 4.7E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00788 b1e375fd1be8cda2490c1b1935eb0be6 292 SUPERFAMILY SSF53448 1 282 3.34E-84 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00788 b1e375fd1be8cda2490c1b1935eb0be6 292 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 1 282 3.0E-146 T 12-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 AMJ96_CH00788 b1e375fd1be8cda2490c1b1935eb0be6 292 Pfam PF00483 Nucleotidyl transferase 1 234 1.7E-65 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AMJ96_CH00788 b1e375fd1be8cda2490c1b1935eb0be6 292 Gene3D G3DSA:3.90.550.10 1 288 4.2E-79 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_PC00120 33ac19797beb80cde5f553e166366a54 399 SUPERFAMILY SSF54826 1 106 1.49E-22 T 12-10-2018 AMJ96_PC00120 33ac19797beb80cde5f553e166366a54 399 Pfam PF13378 Enolase C-terminal domain-like 185 385 1.7E-36 T 12-10-2018 IPR029065 Enolase C-terminal domain-like AMJ96_PC00120 33ac19797beb80cde5f553e166366a54 399 Gene3D G3DSA:3.20.20.120 94 374 8.4E-91 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_PC00120 33ac19797beb80cde5f553e166366a54 399 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 16 101 1.5E-12 T 12-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMJ96_PC00120 33ac19797beb80cde5f553e166366a54 399 SUPERFAMILY SSF51604 89 392 1.13E-54 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_PC00120 33ac19797beb80cde5f553e166366a54 399 Gene3D G3DSA:3.30.390.10 16 385 8.4E-91 T 12-10-2018 IPR029017 Enolase-like, N-terminal AMJ96_PC00120 33ac19797beb80cde5f553e166366a54 399 SMART SM00922 124 261 1.3E-7 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMJ96_PC00113 979cdd9093a3334810edc66fadb7746f 365 Pfam PF03459 TOBE domain 296 353 3.4E-8 T 12-10-2018 IPR005116 Transport-associated OB, type 1 AMJ96_PC00113 979cdd9093a3334810edc66fadb7746f 365 SUPERFAMILY SSF52540 4 241 2.0E-84 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00113 979cdd9093a3334810edc66fadb7746f 365 SMART SM00382 28 212 2.1E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00113 979cdd9093a3334810edc66fadb7746f 365 Gene3D G3DSA:2.40.50.140 286 347 3.3E-19 T 12-10-2018 AMJ96_PC00113 979cdd9093a3334810edc66fadb7746f 365 Pfam PF00005 ABC transporter 20 161 4.4E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00113 979cdd9093a3334810edc66fadb7746f 365 Gene3D G3DSA:3.40.50.300 1 238 1.8E-75 T 12-10-2018 AMJ96_PC00113 979cdd9093a3334810edc66fadb7746f 365 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00113 979cdd9093a3334810edc66fadb7746f 365 Gene3D G3DSA:2.40.50.100 245 360 3.3E-19 T 12-10-2018 AMJ96_PC00113 979cdd9093a3334810edc66fadb7746f 365 SUPERFAMILY SSF50331 236 362 2.41E-18 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH02036 c70613cdd77863fef952e83f5d47e071 247 SMART SM00382 31 223 1.3E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02036 c70613cdd77863fef952e83f5d47e071 247 Gene3D G3DSA:3.40.50.300 3 236 1.5E-55 T 12-10-2018 AMJ96_CH02036 c70613cdd77863fef952e83f5d47e071 247 SUPERFAMILY SSF52540 7 228 4.53E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02036 c70613cdd77863fef952e83f5d47e071 247 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02036 c70613cdd77863fef952e83f5d47e071 247 Pfam PF00005 ABC transporter 22 166 2.5E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH01907 5e037973ef211ba874f3ed429671ff5e 278 PRINTS PR00599 Methionine aminopeptidase-1 signature 206 218 6.2E-22 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMJ96_CH01907 5e037973ef211ba874f3ed429671ff5e 278 PRINTS PR00599 Methionine aminopeptidase-1 signature 105 121 6.2E-22 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMJ96_CH01907 5e037973ef211ba874f3ed429671ff5e 278 PRINTS PR00599 Methionine aminopeptidase-1 signature 175 187 6.2E-22 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMJ96_CH01907 5e037973ef211ba874f3ed429671ff5e 278 PRINTS PR00599 Methionine aminopeptidase-1 signature 83 96 6.2E-22 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMJ96_CH01907 5e037973ef211ba874f3ed429671ff5e 278 Pfam PF00557 Metallopeptidase family M24 27 255 2.1E-51 T 12-10-2018 IPR000994 Peptidase M24 AMJ96_CH01907 5e037973ef211ba874f3ed429671ff5e 278 Gene3D G3DSA:3.90.230.10 2 266 2.5E-107 T 12-10-2018 AMJ96_CH01907 5e037973ef211ba874f3ed429671ff5e 278 Hamap MF_01974 Methionine aminopeptidase [map]. 18 264 39.519 T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMJ96_CH01907 5e037973ef211ba874f3ed429671ff5e 278 SUPERFAMILY SSF55920 24 268 1.31E-87 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like AMJ96_CH01907 5e037973ef211ba874f3ed429671ff5e 278 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 18 263 3.1E-91 T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMJ96_CH01907 5e037973ef211ba874f3ed429671ff5e 278 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 181 199 - T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AMJ96_PA00028 291441c6f6e129e1306acc12a9de3038 346 SUPERFAMILY SSF51679 1 345 8.24E-80 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_PA00028 291441c6f6e129e1306acc12a9de3038 346 Gene3D G3DSA:3.20.20.30 1 346 8.7E-80 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_PA00028 291441c6f6e129e1306acc12a9de3038 346 Pfam PF00296 Luciferase-like monooxygenase 1 314 3.7E-53 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMJ96_PB00079 1050e5f7d6704199395b0e567fef089d 392 SUPERFAMILY SSF56059 95 297 1.31E-41 T 12-10-2018 AMJ96_PB00079 1050e5f7d6704199395b0e567fef089d 392 Pfam PF13535 ATP-grasp domain 131 270 1.0E-15 T 12-10-2018 AMJ96_PB00079 1050e5f7d6704199395b0e567fef089d 392 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 261 268 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMJ96_PB00079 1050e5f7d6704199395b0e567fef089d 392 Gene3D G3DSA:3.30.470.20 89 388 6.4E-65 T 12-10-2018 AMJ96_CH03796 05efd329ddd8547eb48d67cc7c2309be 209 Gene3D G3DSA:3.20.10.10 77 206 1.1E-32 T 12-10-2018 AMJ96_CH03796 05efd329ddd8547eb48d67cc7c2309be 209 Pfam PF01063 Amino-transferase class IV 6 203 1.3E-27 T 12-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 AMJ96_CH03796 05efd329ddd8547eb48d67cc7c2309be 209 Gene3D G3DSA:3.30.470.10 1 75 3.7E-21 T 12-10-2018 AMJ96_CH03796 05efd329ddd8547eb48d67cc7c2309be 209 SUPERFAMILY SSF56752 3 203 6.41E-36 T 12-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 AMJ96_PD00496 5043b4871012bcc3fe71adf93079d110 359 SUPERFAMILY SSF52540 36 274 1.98E-69 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00496 5043b4871012bcc3fe71adf93079d110 359 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 41 347 3.1E-101 T 12-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 AMJ96_PD00496 5043b4871012bcc3fe71adf93079d110 359 SUPERFAMILY SSF54631 279 344 7.47E-6 T 12-10-2018 AMJ96_PD00496 5043b4871012bcc3fe71adf93079d110 359 SMART SM00382 59 245 1.4E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00496 5043b4871012bcc3fe71adf93079d110 359 Pfam PF00005 ABC transporter 48 196 1.6E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00496 5043b4871012bcc3fe71adf93079d110 359 Gene3D G3DSA:3.40.50.300 31 314 3.6E-70 T 12-10-2018 AMJ96_PD00496 5043b4871012bcc3fe71adf93079d110 359 ProSitePatterns PS00211 ABC transporters family signature. 169 183 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PA00016 392d9e0d68e91e13be7a9d6989e3d58f 193 SUPERFAMILY SSF53474 4 170 6.12E-26 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PA00016 392d9e0d68e91e13be7a9d6989e3d58f 193 Gene3D G3DSA:3.40.50.1820 1 179 2.1E-47 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PA00016 392d9e0d68e91e13be7a9d6989e3d58f 193 Pfam PF06821 Serine hydrolase 4 172 1.9E-52 T 12-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 AMJ96_CH02257 41c37aca13dd2314a6c716ba0653880a 175 PIRSF PIRSF008502 1 175 3.5E-37 T 12-10-2018 IPR012545 Protein of unknown function DUF1697 AMJ96_CH02257 41c37aca13dd2314a6c716ba0653880a 175 Pfam PF08002 Protein of unknown function (DUF1697) 1 135 1.5E-27 T 12-10-2018 IPR012545 Protein of unknown function DUF1697 AMJ96_CH02257 41c37aca13dd2314a6c716ba0653880a 175 Gene3D G3DSA:3.30.70.1280 1 86 2.7E-12 T 12-10-2018 AMJ96_CH02257 41c37aca13dd2314a6c716ba0653880a 175 SUPERFAMILY SSF160379 1 173 2.22E-37 T 12-10-2018 AMJ96_CH02167 794748a18892709b45d7020fd44b96e4 188 Pfam PF10754 Protein of unknown function (DUF2569) 38 177 3.6E-17 T 12-10-2018 IPR019690 Protein of unknown function DUF2569 AMJ96_CH02163 8c09c60523e492970b1d2c77dd581af5 490 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 230 484 1.0E-52 T 12-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AMJ96_CH02163 8c09c60523e492970b1d2c77dd581af5 490 Gene3D G3DSA:3.40.50.10260 6 214 2.6E-56 T 12-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 AMJ96_CH02163 8c09c60523e492970b1d2c77dd581af5 490 Gene3D G3DSA:3.40.1190.20 224 489 5.6E-67 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_CH02163 8c09c60523e492970b1d2c77dd581af5 490 PIRSF PIRSF017184 8 489 1.5E-105 T 12-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 AMJ96_CH02163 8c09c60523e492970b1d2c77dd581af5 490 SUPERFAMILY SSF64153 9 246 3.01E-57 T 12-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 AMJ96_CH02163 8c09c60523e492970b1d2c77dd581af5 490 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 436 446 - T 12-10-2018 IPR017953 Carbohydrate kinase, predicted, conserved site AMJ96_CH02163 8c09c60523e492970b1d2c77dd581af5 490 SUPERFAMILY SSF53613 225 486 6.16E-58 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_CH02163 8c09c60523e492970b1d2c77dd581af5 490 Pfam PF03853 YjeF-related protein N-terminus 32 187 1.3E-38 T 12-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMJ96_CH02163 8c09c60523e492970b1d2c77dd581af5 490 Pfam PF01256 Carbohydrate kinase 248 476 2.5E-48 T 12-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AMJ96_CH02163 8c09c60523e492970b1d2c77dd581af5 490 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 224 489 17.458 T 12-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AMJ96_CH02163 8c09c60523e492970b1d2c77dd581af5 490 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 8 208 4.5E-40 T 12-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMJ96_CH02163 8c09c60523e492970b1d2c77dd581af5 490 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 11 208 22.862 T 12-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AMJ96_CH03346 7ec0d466b76c70c61988f25a7b4fc2aa 217 Pfam PF00583 Acetyltransferase (GNAT) family 64 144 1.8E-4 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH03346 7ec0d466b76c70c61988f25a7b4fc2aa 217 Gene3D G3DSA:3.40.630.30 13 153 3.4E-8 T 12-10-2018 AMJ96_CH03346 7ec0d466b76c70c61988f25a7b4fc2aa 217 SUPERFAMILY SSF55729 53 143 2.48E-7 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH01162 8403041fc65e800c58a641e5409881af 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 2.6E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01162 8403041fc65e800c58a641e5409881af 306 Pfam PF03466 LysR substrate binding domain 92 296 9.4E-34 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH01162 8403041fc65e800c58a641e5409881af 306 SUPERFAMILY SSF46785 7 91 2.24E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01162 8403041fc65e800c58a641e5409881af 306 Gene3D G3DSA:1.10.10.10 6 93 8.1E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01162 8403041fc65e800c58a641e5409881af 306 Gene3D G3DSA:3.40.190.290 95 297 1.5E-51 T 12-10-2018 AMJ96_CH01162 8403041fc65e800c58a641e5409881af 306 SUPERFAMILY SSF53850 94 300 5.97E-38 T 12-10-2018 AMJ96_CH03932 483f5a5b249001ce270991588232d187 527 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 277 476 7.4E-46 T 12-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AMJ96_CH03932 483f5a5b249001ce270991588232d187 527 Gene3D G3DSA:3.30.420.40 5 500 8.5E-156 T 12-10-2018 AMJ96_CH03932 483f5a5b249001ce270991588232d187 527 SUPERFAMILY SSF53067 270 521 1.13E-51 T 12-10-2018 AMJ96_CH03932 483f5a5b249001ce270991588232d187 527 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 260 8.9E-28 T 12-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AMJ96_CH03932 483f5a5b249001ce270991588232d187 527 PIRSF PIRSF000538 2 526 2.1E-74 T 12-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AMJ96_CH03932 483f5a5b249001ce270991588232d187 527 Gene3D G3DSA:3.30.420.460 319 511 8.5E-156 T 12-10-2018 AMJ96_CH03932 483f5a5b249001ce270991588232d187 527 SUPERFAMILY SSF53067 4 261 1.5E-53 T 12-10-2018 AMJ96_CH03932 483f5a5b249001ce270991588232d187 527 TIGRFAM TIGR01315 5C_CHO_kinase: FGGY-family pentulose kinase 4 519 9.6E-146 T 12-10-2018 IPR006003 FGGY carbohydrate kinase, pentulose kinase GO:0005975|GO:0016773 AMJ96_PC00097 9554d69c3f586be075c1123a219544f2 245 SMART SM00014 107 221 3.2E-19 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMJ96_PC00097 9554d69c3f586be075c1123a219544f2 245 SUPERFAMILY SSF48317 23 232 3.14E-39 T 12-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily AMJ96_PC00097 9554d69c3f586be075c1123a219544f2 245 Pfam PF01569 PAP2 superfamily 109 225 1.6E-21 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMJ96_PC00097 9554d69c3f586be075c1123a219544f2 245 Gene3D G3DSA:1.20.144.10 59 137 1.3E-7 T 12-10-2018 AMJ96_PC00097 9554d69c3f586be075c1123a219544f2 245 Gene3D G3DSA:1.20.144.10 138 236 1.9E-25 T 12-10-2018 AMJ96_PA00256 892ab486875f4f95eed044151817bdb4 255 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 1 245 41.581 T 12-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 AMJ96_PA00256 892ab486875f4f95eed044151817bdb4 255 Pfam PF03746 LamB/YcsF family 3 240 2.4E-86 T 12-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 AMJ96_PA00256 892ab486875f4f95eed044151817bdb4 255 Gene3D G3DSA:3.20.20.370 1 255 7.1E-89 T 12-10-2018 AMJ96_PA00256 892ab486875f4f95eed044151817bdb4 255 SUPERFAMILY SSF88713 1 250 6.3E-84 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMJ96_CH04058 cd8ac50081b84cd3756160242f0816c6 296 SUPERFAMILY SSF103481 41 138 1.09E-11 T 12-10-2018 AMJ96_CH04058 cd8ac50081b84cd3756160242f0816c6 296 SUPERFAMILY SSF103481 189 280 1.06E-5 T 12-10-2018 AMJ96_CH04058 cd8ac50081b84cd3756160242f0816c6 296 Pfam PF00892 EamA-like transporter family 7 135 1.3E-15 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH04058 cd8ac50081b84cd3756160242f0816c6 296 Pfam PF00892 EamA-like transporter family 149 279 3.7E-9 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_PC00311 0c6fa3b5fd3e7e8e7cab3a38ff029070 82 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 59 9.0E-15 T 12-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM AMJ96_PC00311 0c6fa3b5fd3e7e8e7cab3a38ff029070 82 Gene3D G3DSA:3.40.1620.10 1 39 6.5E-12 T 12-10-2018 AMJ96_PC00311 0c6fa3b5fd3e7e8e7cab3a38ff029070 82 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 45 4.9E-12 T 12-10-2018 AMJ96_PC00311 0c6fa3b5fd3e7e8e7cab3a38ff029070 82 SUPERFAMILY SSF143120 1 45 5.62E-12 T 12-10-2018 IPR036165 YefM-like superfamily AMJ96_PB00408 6d5bc4e93aca428adc951d2a01b6c9c4 302 SUPERFAMILY SSF46785 3 81 1.5E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PB00408 6d5bc4e93aca428adc951d2a01b6c9c4 302 Gene3D G3DSA:3.40.190.10 170 269 1.8E-52 T 12-10-2018 AMJ96_PB00408 6d5bc4e93aca428adc951d2a01b6c9c4 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 8.4E-14 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PB00408 6d5bc4e93aca428adc951d2a01b6c9c4 302 SUPERFAMILY SSF53850 90 297 1.18E-42 T 12-10-2018 AMJ96_PB00408 6d5bc4e93aca428adc951d2a01b6c9c4 302 Gene3D G3DSA:3.40.190.10 92 293 1.8E-52 T 12-10-2018 AMJ96_PB00408 6d5bc4e93aca428adc951d2a01b6c9c4 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.6E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PB00408 6d5bc4e93aca428adc951d2a01b6c9c4 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.6E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PB00408 6d5bc4e93aca428adc951d2a01b6c9c4 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.6E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PB00408 6d5bc4e93aca428adc951d2a01b6c9c4 302 Pfam PF03466 LysR substrate binding domain 95 296 4.8E-10 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PB00408 6d5bc4e93aca428adc951d2a01b6c9c4 302 Gene3D G3DSA:1.10.10.10 1 88 4.6E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02086 d7c35692737c87f9d9de78f2a195c9ab 182 Gene3D G3DSA:3.10.450.50 40 174 2.8E-26 T 12-10-2018 AMJ96_CH02086 d7c35692737c87f9d9de78f2a195c9ab 182 Pfam PF12680 SnoaL-like domain 56 161 1.0E-10 T 12-10-2018 IPR037401 SnoaL-like domain AMJ96_CH02086 d7c35692737c87f9d9de78f2a195c9ab 182 SUPERFAMILY SSF54427 51 173 2.72E-22 T 12-10-2018 IPR032710 NTF2-like domain superfamily AMJ96_CH02111 e037d4e9743a551f4d9c3e0a10cee223 318 SUPERFAMILY SSF53850 24 313 2.71E-49 T 12-10-2018 AMJ96_CH02111 e037d4e9743a551f4d9c3e0a10cee223 318 Gene3D G3DSA:3.40.190.100 112 242 3.9E-36 T 12-10-2018 AMJ96_CH02111 e037d4e9743a551f4d9c3e0a10cee223 318 Gene3D G3DSA:3.40.190.10 31 312 3.9E-36 T 12-10-2018 AMJ96_CH02111 e037d4e9743a551f4d9c3e0a10cee223 318 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 30 304 9.3E-41 T 12-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 AMJ96_PB00303 da7755364217d1ffe4601080ba7ae211 127 Pfam PF03206 Nitrogen fixation protein NifW 16 119 2.0E-33 T 12-10-2018 IPR004893 Nitrogen fixation protein NifW GO:0009399 AMJ96_PB00303 da7755364217d1ffe4601080ba7ae211 127 PIRSF PIRSF005790 11 122 3.9E-35 T 12-10-2018 IPR004893 Nitrogen fixation protein NifW GO:0009399 AMJ96_PB00303 da7755364217d1ffe4601080ba7ae211 127 Hamap MF_00529 Nitrogenase-stabilizing/protective protein NifW [nifW]. 14 121 25.475 T 12-10-2018 IPR004893 Nitrogen fixation protein NifW GO:0009399 AMJ96_PA00056 0b8e35d4d49ca481e15cef7453e6546a 380 SUPERFAMILY SSF53092 7 145 1.73E-19 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMJ96_PA00056 0b8e35d4d49ca481e15cef7453e6546a 380 Gene3D G3DSA:3.90.230.10 147 373 7.2E-68 T 12-10-2018 AMJ96_PA00056 0b8e35d4d49ca481e15cef7453e6546a 380 SUPERFAMILY SSF55920 127 370 8.51E-65 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like AMJ96_PA00056 0b8e35d4d49ca481e15cef7453e6546a 380 Pfam PF00557 Metallopeptidase family M24 155 361 5.4E-49 T 12-10-2018 IPR000994 Peptidase M24 AMJ96_PA00056 0b8e35d4d49ca481e15cef7453e6546a 380 Pfam PF01321 Creatinase/Prolidase N-terminal domain 18 147 2.0E-15 T 12-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 AMJ96_PA00056 0b8e35d4d49ca481e15cef7453e6546a 380 Gene3D G3DSA:3.40.350.10 3 145 8.3E-31 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMJ96_CH03923 28d850022b53373ef552d020f7def4c5 265 Pfam PF13490 Putative zinc-finger 9 43 7.6E-10 T 12-10-2018 IPR027383 Putative zinc-finger AMJ96_CH03923 28d850022b53373ef552d020f7def4c5 265 Gene3D G3DSA:1.10.10.1320 6 100 1.6E-7 T 12-10-2018 AMJ96_CH04034 8d404272adfd286677f1cec450d305ff 249 Pfam PF01012 Electron transfer flavoprotein domain 29 205 4.4E-47 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMJ96_CH04034 8d404272adfd286677f1cec450d305ff 249 PIRSF PIRSF000090 1 249 1.6E-87 T 12-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AMJ96_CH04034 8d404272adfd286677f1cec450d305ff 249 SUPERFAMILY SSF52402 1 242 3.91E-88 T 12-10-2018 AMJ96_CH04034 8d404272adfd286677f1cec450d305ff 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 12-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AMJ96_CH04034 8d404272adfd286677f1cec450d305ff 249 SMART SM00893 23 211 2.9E-70 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMJ96_CH04034 8d404272adfd286677f1cec450d305ff 249 Gene3D G3DSA:3.40.50.620 1 247 2.4E-91 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH03697 6f778e97ebbe9b204b23300a4d5f39e3 643 ProSitePatterns PS00674 AAA-protein family signature. 297 315 - T 12-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 AMJ96_CH03697 6f778e97ebbe9b204b23300a4d5f39e3 643 Pfam PF01434 Peptidase family M41 387 598 9.5E-80 T 12-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AMJ96_CH03697 6f778e97ebbe9b204b23300a4d5f39e3 643 Gene3D G3DSA:2.40.50.920 29 104 8.4E-13 T 12-10-2018 AMJ96_CH03697 6f778e97ebbe9b204b23300a4d5f39e3 643 Gene3D G3DSA:1.10.8.60 328 405 2.4E-30 T 12-10-2018 AMJ96_CH03697 6f778e97ebbe9b204b23300a4d5f39e3 643 SUPERFAMILY SSF140990 409 603 1.57E-73 T 12-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AMJ96_CH03697 6f778e97ebbe9b204b23300a4d5f39e3 643 SMART SM00382 190 329 6.9E-26 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03697 6f778e97ebbe9b204b23300a4d5f39e3 643 Pfam PF06480 FtsH Extracellular 10 94 4.6E-14 T 12-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 AMJ96_CH03697 6f778e97ebbe9b204b23300a4d5f39e3 643 SUPERFAMILY SSF52540 149 397 1.85E-74 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03697 6f778e97ebbe9b204b23300a4d5f39e3 643 Gene3D G3DSA:3.40.50.300 146 326 3.5E-71 T 12-10-2018 AMJ96_CH03697 6f778e97ebbe9b204b23300a4d5f39e3 643 Gene3D G3DSA:1.20.58.760 408 608 8.1E-75 T 12-10-2018 AMJ96_CH03697 6f778e97ebbe9b204b23300a4d5f39e3 643 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 6 616 37.787 T 12-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 AMJ96_CH03697 6f778e97ebbe9b204b23300a4d5f39e3 643 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 194 326 4.0E-46 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMJ96_CH03697 6f778e97ebbe9b204b23300a4d5f39e3 643 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 107 599 3.1E-237 T 12-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 AMJ96_PB00286 0c99cda5e76d90d42a70301bb1ae7fb2 496 SUPERFAMILY SSF53807 21 457 1.5E-141 T 12-10-2018 AMJ96_PB00286 0c99cda5e76d90d42a70301bb1ae7fb2 496 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 63 70 - T 12-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 AMJ96_PB00286 0c99cda5e76d90d42a70301bb1ae7fb2 496 TIGRFAM TIGR01283 nifE: nitrogenase MoFe cofactor biosynthesis protein NifE 5 459 1.7E-202 T 12-10-2018 IPR005973 Nitrogenase MoFe cofactor biosynthesis protein NifE GO:0009399|GO:0065003 AMJ96_PB00286 0c99cda5e76d90d42a70301bb1ae7fb2 496 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 45 445 1.6E-107 T 12-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 AMJ96_PB00286 0c99cda5e76d90d42a70301bb1ae7fb2 496 Gene3D G3DSA:3.40.50.12380 183 453 3.9E-105 T 12-10-2018 AMJ96_PB00286 0c99cda5e76d90d42a70301bb1ae7fb2 496 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 130 144 - T 12-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 AMJ96_PB00286 0c99cda5e76d90d42a70301bb1ae7fb2 496 Gene3D G3DSA:3.40.50.1980 31 182 9.3E-51 T 12-10-2018 AMJ96_CH04124 c47341f0ba445899dd48b37f909ec036 738 Gene3D G3DSA:1.10.8.630 21 124 2.1E-25 T 12-10-2018 AMJ96_CH04124 c47341f0ba445899dd48b37f909ec036 738 SMART SM00490 503 600 5.4E-4 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH04124 c47341f0ba445899dd48b37f909ec036 738 SUPERFAMILY SSF52540 470 618 1.97E-18 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04124 c47341f0ba445899dd48b37f909ec036 738 Gene3D G3DSA:3.40.50.300 197 386 1.8E-63 T 12-10-2018 AMJ96_CH04124 c47341f0ba445899dd48b37f909ec036 738 SMART SM00487 201 400 8.9E-16 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMJ96_CH04124 c47341f0ba445899dd48b37f909ec036 738 Pfam PF00270 DEAD/DEAH box helicase 227 368 5.6E-10 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMJ96_CH04124 c47341f0ba445899dd48b37f909ec036 738 TIGRFAM TIGR00595 priA: primosomal protein N' 229 734 1.2E-180 T 12-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 AMJ96_CH04124 c47341f0ba445899dd48b37f909ec036 738 SUPERFAMILY SSF52540 205 379 1.63E-34 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04124 c47341f0ba445899dd48b37f909ec036 738 Hamap MF_00983 Probable primosomal protein N' [priA]. 24 737 23.385 T 12-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 AMJ96_CH02169 e7ec349829fa10a5e33cc269fbc7b614 929 SMART SM00434 19 498 1.4E-276 T 12-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMJ96_CH02169 e7ec349829fa10a5e33cc269fbc7b614 929 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 3 900 23.112 T 12-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMJ96_CH02169 e7ec349829fa10a5e33cc269fbc7b614 929 Gene3D G3DSA:1.10.268.10 377 492 3.6E-221 T 12-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMJ96_CH02169 e7ec349829fa10a5e33cc269fbc7b614 929 Gene3D G3DSA:3.90.199.10 41 520 3.6E-221 T 12-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 AMJ96_CH02169 e7ec349829fa10a5e33cc269fbc7b614 929 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 40 505 3.6E-151 T 12-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMJ96_CH02169 e7ec349829fa10a5e33cc269fbc7b614 929 SUPERFAMILY SSF101904 532 911 1.01E-94 T 12-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMJ96_CH02169 e7ec349829fa10a5e33cc269fbc7b614 929 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 16 899 0.0 T 12-10-2018 AMJ96_CH02169 e7ec349829fa10a5e33cc269fbc7b614 929 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 800 849 2.3E-10 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMJ96_CH02169 e7ec349829fa10a5e33cc269fbc7b614 929 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 647 691 9.4E-7 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMJ96_CH02169 e7ec349829fa10a5e33cc269fbc7b614 929 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 852 899 1.9E-10 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMJ96_CH02169 e7ec349829fa10a5e33cc269fbc7b614 929 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 695 742 7.2E-13 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMJ96_CH02169 e7ec349829fa10a5e33cc269fbc7b614 929 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 589 636 9.3E-5 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMJ96_CH02169 e7ec349829fa10a5e33cc269fbc7b614 929 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 537 584 1.5E-13 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMJ96_CH02169 e7ec349829fa10a5e33cc269fbc7b614 929 Gene3D G3DSA:3.30.1360.40 244 340 3.6E-221 T 12-10-2018 AMJ96_CH02169 e7ec349829fa10a5e33cc269fbc7b614 929 SUPERFAMILY SSF56719 38 521 1.18E-178 T 12-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMJ96_CH01703 a552f03b86c04c8767f299b0986ebc9d 172 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 1 158 25.306 T 12-10-2018 IPR022973 Ribosomal protein L10 AMJ96_CH01703 a552f03b86c04c8767f299b0986ebc9d 172 Pfam PF00466 Ribosomal protein L10 3 98 1.9E-25 T 12-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 AMJ96_CH01703 a552f03b86c04c8767f299b0986ebc9d 172 Gene3D G3DSA:3.30.70.1730 1 131 2.7E-36 T 12-10-2018 AMJ96_CH01703 a552f03b86c04c8767f299b0986ebc9d 172 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 4 141 2.0E-6 T 12-10-2018 AMJ96_CH01703 a552f03b86c04c8767f299b0986ebc9d 172 SUPERFAMILY SSF160369 3 168 2.62E-52 T 12-10-2018 AMJ96_CH03182 80336fa8d1a90a3cc3152d076f47b52c 310 SUPERFAMILY SSF53271 66 300 3.02E-62 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like AMJ96_CH03182 80336fa8d1a90a3cc3152d076f47b52c 310 Gene3D G3DSA:3.40.50.2020 4 298 3.0E-123 T 12-10-2018 AMJ96_CH03182 80336fa8d1a90a3cc3152d076f47b52c 310 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 1 310 1.3E-115 T 12-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AMJ96_CH03182 80336fa8d1a90a3cc3152d076f47b52c 310 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 1 310 48.779 T 12-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 AMJ96_CH03182 80336fa8d1a90a3cc3152d076f47b52c 310 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 1 117 5.2E-51 T 12-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AMJ96_CH03182 80336fa8d1a90a3cc3152d076f47b52c 310 SMART SM01400 1 117 8.9E-81 T 12-10-2018 AMJ96_CH03182 80336fa8d1a90a3cc3152d076f47b52c 310 Pfam PF14572 Phosphoribosyl synthetase-associated domain 199 309 2.8E-22 T 12-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AMJ96_CH03182 80336fa8d1a90a3cc3152d076f47b52c 310 Gene3D G3DSA:3.40.50.2020 144 286 3.0E-123 T 12-10-2018 AMJ96_CH03182 80336fa8d1a90a3cc3152d076f47b52c 310 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 125 140 - T 12-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 AMJ96_CH02730 4a7589635ce79e0a7169de8e4679d084 170 Pfam PF07886 BA14K-like protein 141 170 4.3E-13 T 12-10-2018 IPR012413 BA14k family GO:0009405 AMJ96_CH01308 52cf41cc61750ed1a5eac22e34c1f06e 186 SUPERFAMILY SSF46689 1 72 6.14E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH01308 52cf41cc61750ed1a5eac22e34c1f06e 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 58 2.8E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH01308 52cf41cc61750ed1a5eac22e34c1f06e 186 Gene3D G3DSA:1.10.357.10 1 185 2.8E-40 T 12-10-2018 AMJ96_CH00934 52fdb0f852174c5d52abd7411af48680 638 SUPERFAMILY SSF52922 492 629 5.37E-32 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMJ96_CH00934 52fdb0f852174c5d52abd7411af48680 638 SUPERFAMILY SSF52518 7 382 3.61E-78 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_CH00934 52fdb0f852174c5d52abd7411af48680 638 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 10 283 1.2E-115 T 12-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMJ96_CH00934 52fdb0f852174c5d52abd7411af48680 638 SMART SM00861 320 485 4.8E-63 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMJ96_CH00934 52fdb0f852174c5d52abd7411af48680 638 Gene3D G3DSA:3.40.50.970 318 492 1.8E-64 T 12-10-2018 AMJ96_CH00934 52fdb0f852174c5d52abd7411af48680 638 ProSitePatterns PS00801 Transketolase signature 1. 35 54 - T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMJ96_CH00934 52fdb0f852174c5d52abd7411af48680 638 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 15 626 1.2E-238 T 12-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMJ96_CH00934 52fdb0f852174c5d52abd7411af48680 638 Pfam PF02779 Transketolase, pyrimidine binding domain 320 480 1.8E-38 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMJ96_CH00934 52fdb0f852174c5d52abd7411af48680 638 ProSitePatterns PS00802 Transketolase signature 2. 426 442 - T 12-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMJ96_CH00934 52fdb0f852174c5d52abd7411af48680 638 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 9 629 44.266 T 12-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMJ96_CH00934 52fdb0f852174c5d52abd7411af48680 638 Pfam PF02780 Transketolase, C-terminal domain 497 620 6.1E-29 T 12-10-2018 IPR033248 Transketolase, C-terminal domain AMJ96_CH00934 52fdb0f852174c5d52abd7411af48680 638 SUPERFAMILY SSF52518 317 506 2.29E-57 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_CH00934 52fdb0f852174c5d52abd7411af48680 638 Gene3D G3DSA:3.40.50.920 497 629 1.6E-34 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 AMJ96_CH01979 53a73ee571e624cc747274007cf2b911 368 Pfam PF13531 Bacterial extracellular solute-binding protein 67 325 9.2E-11 T 12-10-2018 AMJ96_CH00082 0e90a58558cf824a5cb36033e1bebd58 382 SUPERFAMILY SSF51735 48 171 3.74E-26 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00082 0e90a58558cf824a5cb36033e1bebd58 382 Gene3D G3DSA:3.40.50.720 1 138 2.0E-33 T 12-10-2018 AMJ96_CH00082 0e90a58558cf824a5cb36033e1bebd58 382 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 48 135 1.0E-7 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_CH00082 0e90a58558cf824a5cb36033e1bebd58 382 Gene3D G3DSA:3.30.360.10 139 380 6.7E-65 T 12-10-2018 AMJ96_CH00082 0e90a58558cf824a5cb36033e1bebd58 382 SUPERFAMILY SSF55347 144 345 6.05E-32 T 12-10-2018 AMJ96_PA00150 cbb3045db2c2e255717a772af0b09474 176 Pfam PF10006 Uncharacterized conserved protein (DUF2249) 6 72 1.7E-17 T 12-10-2018 IPR018720 Domain of unknown function DUF2249 AMJ96_PA00150 cbb3045db2c2e255717a772af0b09474 176 Pfam PF10006 Uncharacterized conserved protein (DUF2249) 100 165 2.6E-16 T 12-10-2018 IPR018720 Domain of unknown function DUF2249 AMJ96_PA00150 cbb3045db2c2e255717a772af0b09474 176 SUPERFAMILY SSF64307 77 165 4.19E-13 T 12-10-2018 IPR036868 TusA-like domain superfamily AMJ96_CH00075 ebf225b14caae487de59d4b3ae827d63 428 Pfam PF13416 Bacterial extracellular solute-binding protein 53 333 3.0E-25 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH00075 ebf225b14caae487de59d4b3ae827d63 428 SUPERFAMILY SSF53850 32 427 1.32E-50 T 12-10-2018 AMJ96_CH00075 ebf225b14caae487de59d4b3ae827d63 428 Gene3D G3DSA:3.40.190.10 36 372 6.0E-115 T 12-10-2018 AMJ96_CH00075 ebf225b14caae487de59d4b3ae827d63 428 Gene3D G3DSA:3.40.190.10 145 421 6.0E-115 T 12-10-2018 AMJ96_PC00387 42468681af5162a516f67eaeb0f24f8b 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 293 5.1E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00387 42468681af5162a516f67eaeb0f24f8b 294 Gene3D G3DSA:1.10.3720.10 48 292 1.6E-64 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00387 42468681af5162a516f67eaeb0f24f8b 294 SUPERFAMILY SSF161098 54 277 5.76E-55 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00387 42468681af5162a516f67eaeb0f24f8b 294 SUPERFAMILY SSF160964 9 42 8.89E-5 T 12-10-2018 AMJ96_PD00477 8e333d0e00934bf89771d69b4a2b459b 337 Pfam PF12833 Helix-turn-helix domain 253 331 3.6E-25 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PD00477 8e333d0e00934bf89771d69b4a2b459b 337 Gene3D G3DSA:1.10.10.60 227 335 1.2E-28 T 12-10-2018 AMJ96_PD00477 8e333d0e00934bf89771d69b4a2b459b 337 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 284 326 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_PD00477 8e333d0e00934bf89771d69b4a2b459b 337 Pfam PF01965 DJ-1/PfpI family 59 147 8.0E-10 T 12-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 AMJ96_PD00477 8e333d0e00934bf89771d69b4a2b459b 337 Gene3D G3DSA:3.40.50.880 15 219 2.3E-39 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_PD00477 8e333d0e00934bf89771d69b4a2b459b 337 SUPERFAMILY SSF46689 230 278 2.87E-6 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00477 8e333d0e00934bf89771d69b4a2b459b 337 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 299 314 8.4E-8 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_PD00477 8e333d0e00934bf89771d69b4a2b459b 337 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 314 330 8.4E-8 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_PD00477 8e333d0e00934bf89771d69b4a2b459b 337 SMART SM00342 247 330 6.2E-26 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PD00477 8e333d0e00934bf89771d69b4a2b459b 337 SUPERFAMILY SSF52317 20 209 3.21E-33 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_PD00477 8e333d0e00934bf89771d69b4a2b459b 337 SUPERFAMILY SSF46689 283 332 1.52E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03738 3ec9a08bffacc91887a73a3ddf74454d 336 SUPERFAMILY SSF51735 1 182 2.1E-61 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03738 3ec9a08bffacc91887a73a3ddf74454d 336 Gene3D G3DSA:3.40.50.720 4 327 6.7E-151 T 12-10-2018 AMJ96_CH03738 3ec9a08bffacc91887a73a3ddf74454d 336 PIRSF PIRSF000149 1 336 8.3E-139 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03738 3ec9a08bffacc91887a73a3ddf74454d 336 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 326 3.9E-129 T 12-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03738 3ec9a08bffacc91887a73a3ddf74454d 336 SMART SM00846 3 154 7.6E-94 T 12-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03738 3ec9a08bffacc91887a73a3ddf74454d 336 Gene3D G3DSA:3.30.360.10 153 317 6.7E-151 T 12-10-2018 AMJ96_CH03738 3ec9a08bffacc91887a73a3ddf74454d 336 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 152 159 - T 12-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03738 3ec9a08bffacc91887a73a3ddf74454d 336 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 315 2.6E-66 T 12-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03738 3ec9a08bffacc91887a73a3ddf74454d 336 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 105 6.3E-36 T 12-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03738 3ec9a08bffacc91887a73a3ddf74454d 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 231 248 7.8E-40 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03738 3ec9a08bffacc91887a73a3ddf74454d 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 271 286 7.8E-40 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03738 3ec9a08bffacc91887a73a3ddf74454d 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 112 125 7.8E-40 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03738 3ec9a08bffacc91887a73a3ddf74454d 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 175 191 7.8E-40 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03738 3ec9a08bffacc91887a73a3ddf74454d 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 148 166 7.8E-40 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03738 3ec9a08bffacc91887a73a3ddf74454d 336 SUPERFAMILY SSF55347 154 316 1.25E-72 T 12-10-2018 AMJ96_CH00129 aa23f7aa7d5f59da312e568c2e29af73 107 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 2 96 21.883 T 12-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMJ96_CH00129 aa23f7aa7d5f59da312e568c2e29af73 107 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 3 103 1.5E-26 T 12-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMJ96_CH00129 aa23f7aa7d5f59da312e568c2e29af73 107 Pfam PF02575 YbaB/EbfC DNA-binding family 8 97 7.0E-32 T 12-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMJ96_CH00129 aa23f7aa7d5f59da312e568c2e29af73 107 SUPERFAMILY SSF82607 8 101 1.96E-30 T 12-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily AMJ96_CH00129 aa23f7aa7d5f59da312e568c2e29af73 107 PIRSF PIRSF004555 1 107 7.4E-34 T 12-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AMJ96_CH00129 aa23f7aa7d5f59da312e568c2e29af73 107 Gene3D G3DSA:3.30.1310.10 1 107 2.6E-39 T 12-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily AMJ96_PD00558 fe567b45615d9cc15955b3a2acbf6861 821 Pfam PF07691 PA14 domain 392 506 6.2E-13 T 12-10-2018 IPR011658 PA14 domain AMJ96_PD00558 fe567b45615d9cc15955b3a2acbf6861 821 Gene3D G3DSA:3.40.50.1700 297 627 4.1E-245 T 12-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 AMJ96_PD00558 fe567b45615d9cc15955b3a2acbf6861 821 Gene3D G3DSA:2.60.40.10 704 810 2.3E-27 T 12-10-2018 IPR013783 Immunoglobulin-like fold AMJ96_PD00558 fe567b45615d9cc15955b3a2acbf6861 821 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 312 673 9.0E-65 T 12-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMJ96_PD00558 fe567b45615d9cc15955b3a2acbf6861 821 SUPERFAMILY SSF52279 312 696 1.06E-57 T 12-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 AMJ96_PD00558 fe567b45615d9cc15955b3a2acbf6861 821 SUPERFAMILY SSF51445 2 309 4.21E-97 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_PD00558 fe567b45615d9cc15955b3a2acbf6861 821 Pfam PF14310 Fibronectin type III-like domain 729 796 4.4E-19 T 12-10-2018 IPR026891 Fibronectin type III-like domain AMJ96_PD00558 fe567b45615d9cc15955b3a2acbf6861 821 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 208 225 - T 12-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 AMJ96_PD00558 fe567b45615d9cc15955b3a2acbf6861 821 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 27 274 1.5E-61 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMJ96_PD00558 fe567b45615d9cc15955b3a2acbf6861 821 PRINTS PR00133 Glycosyl hydrolase family 3 signature 138 154 1.2E-35 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMJ96_PD00558 fe567b45615d9cc15955b3a2acbf6861 821 PRINTS PR00133 Glycosyl hydrolase family 3 signature 208 226 1.2E-35 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMJ96_PD00558 fe567b45615d9cc15955b3a2acbf6861 821 PRINTS PR00133 Glycosyl hydrolase family 3 signature 107 123 1.2E-35 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMJ96_PD00558 fe567b45615d9cc15955b3a2acbf6861 821 PRINTS PR00133 Glycosyl hydrolase family 3 signature 31 47 1.2E-35 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMJ96_PD00558 fe567b45615d9cc15955b3a2acbf6861 821 PRINTS PR00133 Glycosyl hydrolase family 3 signature 61 80 1.2E-35 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMJ96_PD00558 fe567b45615d9cc15955b3a2acbf6861 821 Gene3D G3DSA:2.60.120.260 377 526 4.1E-245 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily AMJ96_PD00558 fe567b45615d9cc15955b3a2acbf6861 821 Gene3D G3DSA:3.20.20.300 4 677 4.1E-245 T 12-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 AMJ96_PD00558 fe567b45615d9cc15955b3a2acbf6861 821 SMART SM00758 389 537 2.4E-7 T 12-10-2018 IPR011658 PA14 domain AMJ96_PD00558 fe567b45615d9cc15955b3a2acbf6861 821 SMART SM01217 729 799 1.3E-24 T 12-10-2018 IPR026891 Fibronectin type III-like domain AMJ96_PD00558 fe567b45615d9cc15955b3a2acbf6861 821 SUPERFAMILY SSF56988 392 581 3.01E-15 T 12-10-2018 AMJ96_CH00100 a9287ce4c7095e99d0b4ccf52f396f48 215 Pfam PF02224 Cytidylate kinase 8 199 1.7E-56 T 12-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AMJ96_CH00100 a9287ce4c7095e99d0b4ccf52f396f48 215 TIGRFAM TIGR00017 cmk: cytidylate kinase 5 200 6.0E-53 T 12-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AMJ96_CH00100 a9287ce4c7095e99d0b4ccf52f396f48 215 SUPERFAMILY SSF52540 6 210 5.88E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00100 a9287ce4c7095e99d0b4ccf52f396f48 215 Gene3D G3DSA:3.40.50.300 1 213 8.4E-66 T 12-10-2018 AMJ96_CH00100 a9287ce4c7095e99d0b4ccf52f396f48 215 Hamap MF_00238 Cytidylate kinase [cmk]. 6 211 30.736 T 12-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AMJ96_PB00163 4dba022313f6477810abcfd4e46c5add 135 Pfam PF02627 Carboxymuconolactone decarboxylase family 46 128 1.3E-21 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMJ96_PB00163 4dba022313f6477810abcfd4e46c5add 135 SUPERFAMILY SSF69118 10 135 3.52E-36 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_PB00163 4dba022313f6477810abcfd4e46c5add 135 Gene3D G3DSA:1.20.1290.10 13 134 1.0E-37 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_PC00145 4eb8f2bc33ce4c44caf96bacb28d8d85 801 Gene3D G3DSA:1.10.510.10 53 283 4.8E-20 T 12-10-2018 AMJ96_PC00145 4eb8f2bc33ce4c44caf96bacb28d8d85 801 SMART SM00220 9 281 2.4E-4 T 12-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMJ96_PC00145 4eb8f2bc33ce4c44caf96bacb28d8d85 801 SUPERFAMILY SSF56436 666 748 3.06E-6 T 12-10-2018 IPR016187 C-type lectin fold AMJ96_PC00145 4eb8f2bc33ce4c44caf96bacb28d8d85 801 Gene3D G3DSA:3.90.1580.10 657 786 4.0E-5 T 12-10-2018 AMJ96_PC00145 4eb8f2bc33ce4c44caf96bacb28d8d85 801 SUPERFAMILY SSF56112 22 272 9.37E-21 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily AMJ96_PC00145 4eb8f2bc33ce4c44caf96bacb28d8d85 801 Pfam PF00069 Protein kinase domain 56 271 1.1E-11 T 12-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMJ96_PD00294 db22dc3e3da9af462ccd0046d74ac086 261 Pfam PF06283 Trehalose utilisation 21 220 3.8E-31 T 12-10-2018 IPR029010 ThuA-like domain AMJ96_PD00294 db22dc3e3da9af462ccd0046d74ac086 261 PIRSF PIRSF030013 1 248 9.6E-131 T 12-10-2018 IPR009381 Trehalose catabolism protein, ThuA, prokaryote AMJ96_PD00294 db22dc3e3da9af462ccd0046d74ac086 261 SUPERFAMILY SSF52317 2 238 2.52E-58 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_PD00294 db22dc3e3da9af462ccd0046d74ac086 261 Gene3D G3DSA:3.40.50.880 1 245 1.4E-103 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_PB00142 0ebd9f4537ef04b26142ea7fab0187fb 669 SUPERFAMILY SSF158472 211 258 2.88E-9 T 12-10-2018 AMJ96_PB00142 0ebd9f4537ef04b26142ea7fab0187fb 669 SUPERFAMILY SSF58104 340 621 3.01E-67 T 12-10-2018 AMJ96_PB00142 0ebd9f4537ef04b26142ea7fab0187fb 669 Pfam PF12729 Four helix bundle sensory module for signal transduction 7 171 1.7E-20 T 12-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain AMJ96_PB00142 0ebd9f4537ef04b26142ea7fab0187fb 669 SMART SM00283 373 620 1.8E-95 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_PB00142 0ebd9f4537ef04b26142ea7fab0187fb 669 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 431 587 8.7E-47 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_PB00142 0ebd9f4537ef04b26142ea7fab0187fb 669 SMART SM00304 320 372 1.5 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PB00142 0ebd9f4537ef04b26142ea7fab0187fb 669 SMART SM00304 211 264 1.1E-5 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PB00142 0ebd9f4537ef04b26142ea7fab0187fb 669 Gene3D G3DSA:1.20.1480.50 175 270 2.0E-17 T 12-10-2018 AMJ96_PB00142 0ebd9f4537ef04b26142ea7fab0187fb 669 Gene3D G3DSA:1.10.287.950 319 622 1.1E-76 T 12-10-2018 AMJ96_CH03148 bc334e996492070734d6af41cfdb00d8 309 SUPERFAMILY SSF46785 6 114 3.46E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03148 bc334e996492070734d6af41cfdb00d8 309 Gene3D G3DSA:1.10.10.10 7 94 7.5E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03148 bc334e996492070734d6af41cfdb00d8 309 SUPERFAMILY SSF53850 93 293 2.44E-36 T 12-10-2018 AMJ96_CH03148 bc334e996492070734d6af41cfdb00d8 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 4.4E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03148 bc334e996492070734d6af41cfdb00d8 309 Gene3D G3DSA:3.40.190.290 95 289 1.9E-37 T 12-10-2018 AMJ96_CH03148 bc334e996492070734d6af41cfdb00d8 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 6.1E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03148 bc334e996492070734d6af41cfdb00d8 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 6.1E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03148 bc334e996492070734d6af41cfdb00d8 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 6.1E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03148 bc334e996492070734d6af41cfdb00d8 309 Pfam PF03466 LysR substrate binding domain 91 289 1.4E-32 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PD00585 b6c1ebca75e7215bdfd1cb077412c847 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 12-10-2018 IPR019844 Cold-shock conserved site AMJ96_PD00585 b6c1ebca75e7215bdfd1cb077412c847 69 PRINTS PR00050 Cold shock protein signature 40 58 5.2E-12 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_PD00585 b6c1ebca75e7215bdfd1cb077412c847 69 PRINTS PR00050 Cold shock protein signature 4 19 5.2E-12 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_PD00585 b6c1ebca75e7215bdfd1cb077412c847 69 PRINTS PR00050 Cold shock protein signature 25 34 5.2E-12 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_PD00585 b6c1ebca75e7215bdfd1cb077412c847 69 SUPERFAMILY SSF50249 1 66 1.07E-20 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_PD00585 b6c1ebca75e7215bdfd1cb077412c847 69 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 5.5E-22 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_PD00585 b6c1ebca75e7215bdfd1cb077412c847 69 Gene3D G3DSA:2.40.50.140 1 67 1.4E-22 T 12-10-2018 AMJ96_PD00585 b6c1ebca75e7215bdfd1cb077412c847 69 PIRSF PIRSF002599 1 68 1.4E-20 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 AMJ96_PD00585 b6c1ebca75e7215bdfd1cb077412c847 69 SMART SM00357 3 69 7.6E-21 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 AMJ96_CH02840 dee9348b5dc8053b01bf3531ef326e37 298 Gene3D G3DSA:3.40.190.10 168 269 2.5E-61 T 12-10-2018 AMJ96_CH02840 dee9348b5dc8053b01bf3531ef326e37 298 Pfam PF03466 LysR substrate binding domain 90 296 5.1E-45 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH02840 dee9348b5dc8053b01bf3531ef326e37 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 1.4E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02840 dee9348b5dc8053b01bf3531ef326e37 298 Gene3D G3DSA:3.40.190.10 93 294 2.5E-61 T 12-10-2018 AMJ96_CH02840 dee9348b5dc8053b01bf3531ef326e37 298 SUPERFAMILY SSF46785 4 114 7.41E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02840 dee9348b5dc8053b01bf3531ef326e37 298 Gene3D G3DSA:1.10.10.10 4 90 8.2E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02840 dee9348b5dc8053b01bf3531ef326e37 298 SUPERFAMILY SSF53850 92 297 9.15E-46 T 12-10-2018 AMJ96_CH04285 e1ab7da1fb4d714a54eb76997e086ea2 340 PIRSF PIRSF005096 1 340 1.3E-97 T 12-10-2018 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 AMJ96_CH04285 e1ab7da1fb4d714a54eb76997e086ea2 340 Gene3D G3DSA:2.70.98.10 1 339 4.0E-106 T 12-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AMJ96_CH04285 e1ab7da1fb4d714a54eb76997e086ea2 340 Pfam PF01263 Aldose 1-epimerase 23 335 2.6E-79 T 12-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 AMJ96_CH04285 e1ab7da1fb4d714a54eb76997e086ea2 340 SUPERFAMILY SSF74650 8 337 4.27E-100 T 12-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 AMJ96_PB00283 2b2627b7a2331f2558ce1e21980ad495 162 Pfam PF03270 Protein of unknown function, DUF269 40 160 1.2E-50 T 12-10-2018 IPR004952 Uncharacterised protein family UPF0460 AMJ96_PB00283 2b2627b7a2331f2558ce1e21980ad495 162 TIGRFAM TIGR02935 TIGR02935: probable nitrogen fixation protein 21 159 6.5E-62 T 12-10-2018 IPR004952 Uncharacterised protein family UPF0460 AMJ96_PB00283 2b2627b7a2331f2558ce1e21980ad495 162 PIRSF PIRSF005788 4 161 3.9E-67 T 12-10-2018 IPR004952 Uncharacterised protein family UPF0460 AMJ96_PB00283 2b2627b7a2331f2558ce1e21980ad495 162 Gene3D G3DSA:1.10.3100.20 8 161 1.2E-63 T 12-10-2018 AMJ96_CH02389 b1cc822769927b4ddbc301d7cdc62d11 308 Hamap MF_01876 Pseudouridine-5'-phosphate glycosidase [psuG]. 15 308 43.491 T 12-10-2018 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 AMJ96_CH02389 b1cc822769927b4ddbc301d7cdc62d11 308 SUPERFAMILY SSF110581 11 306 2.35E-116 T 12-10-2018 IPR022830 Indigoidine synthase A-like GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 AMJ96_CH02389 b1cc822769927b4ddbc301d7cdc62d11 308 Pfam PF04227 Indigoidine synthase A like protein 16 305 5.1E-129 T 12-10-2018 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 AMJ96_CH02389 b1cc822769927b4ddbc301d7cdc62d11 308 Gene3D G3DSA:3.40.1790.10 9 308 1.3E-131 T 12-10-2018 IPR022830 Indigoidine synthase A-like GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 AMJ96_CH04206 d6f7a5209e64349b7fd3cf812ebbfe52 123 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 82 2.2E-31 T 12-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04206 d6f7a5209e64349b7fd3cf812ebbfe52 123 Pfam PF00886 Ribosomal protein S16 9 70 1.4E-25 T 12-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04206 d6f7a5209e64349b7fd3cf812ebbfe52 123 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 80 24.107 T 12-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04206 d6f7a5209e64349b7fd3cf812ebbfe52 123 SUPERFAMILY SSF54565 3 85 2.75E-30 T 12-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04206 d6f7a5209e64349b7fd3cf812ebbfe52 123 Gene3D G3DSA:3.30.1320.10 1 122 4.1E-39 T 12-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH03646 c366a16508abd6219f2b5d95e87bde8a 403 SUPERFAMILY SSF111369 56 301 1.7E-70 T 12-10-2018 AMJ96_CH03646 c366a16508abd6219f2b5d95e87bde8a 403 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 67 294 5.2E-14 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMJ96_CH03646 c366a16508abd6219f2b5d95e87bde8a 403 Gene3D G3DSA:1.10.287.470 102 174 1.6E-93 T 12-10-2018 AMJ96_CH03646 c366a16508abd6219f2b5d95e87bde8a 403 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 45 375 1.1E-72 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMJ96_CH03646 c366a16508abd6219f2b5d95e87bde8a 403 Gene3D G3DSA:2.40.30.170 55 303 1.6E-93 T 12-10-2018 AMJ96_CH03646 c366a16508abd6219f2b5d95e87bde8a 403 Gene3D G3DSA:2.40.420.20 304 373 1.6E-93 T 12-10-2018 AMJ96_CH03646 c366a16508abd6219f2b5d95e87bde8a 403 Gene3D G3DSA:2.40.50.100 67 210 1.6E-93 T 12-10-2018 AMJ96_PA00097 2afcbe6bbf8ad77ef19797c4cef31ef0 756 Pfam PF01590 GAF domain 41 163 7.8E-9 T 12-10-2018 IPR003018 GAF domain GO:0005515 AMJ96_PA00097 2afcbe6bbf8ad77ef19797c4cef31ef0 756 SMART SM00267 304 472 6.7E-51 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PA00097 2afcbe6bbf8ad77ef19797c4cef31ef0 756 SUPERFAMILY SSF55781 41 185 6.32E-25 T 12-10-2018 AMJ96_PA00097 2afcbe6bbf8ad77ef19797c4cef31ef0 756 Gene3D G3DSA:3.30.450.40 21 184 2.7E-22 T 12-10-2018 IPR029016 GAF-like domain superfamily AMJ96_PA00097 2afcbe6bbf8ad77ef19797c4cef31ef0 756 Pfam PF00990 Diguanylate cyclase, GGDEF domain 315 466 8.2E-33 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PA00097 2afcbe6bbf8ad77ef19797c4cef31ef0 756 Pfam PF08447 PAS fold 212 297 1.9E-9 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 AMJ96_PA00097 2afcbe6bbf8ad77ef19797c4cef31ef0 756 Gene3D G3DSA:3.20.20.450 484 741 7.4E-76 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_PA00097 2afcbe6bbf8ad77ef19797c4cef31ef0 756 SMART SM00052 482 729 3.6E-105 T 12-10-2018 IPR001633 EAL domain AMJ96_PA00097 2afcbe6bbf8ad77ef19797c4cef31ef0 756 Gene3D G3DSA:3.30.450.20 187 255 8.5E-11 T 12-10-2018 AMJ96_PA00097 2afcbe6bbf8ad77ef19797c4cef31ef0 756 SMART SM00065 38 178 4.0E-7 T 12-10-2018 IPR003018 GAF domain GO:0005515 AMJ96_PA00097 2afcbe6bbf8ad77ef19797c4cef31ef0 756 SMART SM00086 263 304 2.8E-5 T 12-10-2018 IPR001610 PAC motif AMJ96_PA00097 2afcbe6bbf8ad77ef19797c4cef31ef0 756 Gene3D G3DSA:2.10.70.100 261 305 5.1E-10 T 12-10-2018 AMJ96_PA00097 2afcbe6bbf8ad77ef19797c4cef31ef0 756 SUPERFAMILY SSF55073 320 474 1.88E-34 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_PA00097 2afcbe6bbf8ad77ef19797c4cef31ef0 756 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 187 311 7.5E-10 T 12-10-2018 IPR000014 PAS domain AMJ96_PA00097 2afcbe6bbf8ad77ef19797c4cef31ef0 756 SUPERFAMILY SSF55785 177 302 1.2E-11 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PA00097 2afcbe6bbf8ad77ef19797c4cef31ef0 756 Gene3D G3DSA:3.30.70.270 309 483 1.3E-41 T 12-10-2018 AMJ96_PA00097 2afcbe6bbf8ad77ef19797c4cef31ef0 756 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 314 470 6.4E-26 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PA00097 2afcbe6bbf8ad77ef19797c4cef31ef0 756 Pfam PF00563 EAL domain 488 724 5.8E-61 T 12-10-2018 IPR001633 EAL domain AMJ96_PA00097 2afcbe6bbf8ad77ef19797c4cef31ef0 756 SUPERFAMILY SSF141868 488 735 1.44E-70 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH01821 2695ef507fbfbb611bc30faec6b6d659 153 ProSitePatterns PS00519 AsnC-type HTH domain signature. 22 48 - T 12-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AMJ96_CH01821 2695ef507fbfbb611bc30faec6b6d659 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 7.8E-17 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH01821 2695ef507fbfbb611bc30faec6b6d659 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 7.8E-17 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH01821 2695ef507fbfbb611bc30faec6b6d659 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 7.8E-17 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH01821 2695ef507fbfbb611bc30faec6b6d659 153 Pfam PF01037 Lrp/AsnC ligand binding domain 70 144 4.8E-22 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMJ96_CH01821 2695ef507fbfbb611bc30faec6b6d659 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 50 2.0E-19 T 12-10-2018 AMJ96_CH01821 2695ef507fbfbb611bc30faec6b6d659 153 SUPERFAMILY SSF46785 4 64 3.66E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01821 2695ef507fbfbb611bc30faec6b6d659 153 SMART SM00344 4 113 2.3E-45 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMJ96_CH01821 2695ef507fbfbb611bc30faec6b6d659 153 Gene3D G3DSA:3.30.70.920 58 141 6.7E-23 T 12-10-2018 AMJ96_CH01821 2695ef507fbfbb611bc30faec6b6d659 153 SUPERFAMILY SSF54909 64 151 1.13E-20 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH01821 2695ef507fbfbb611bc30faec6b6d659 153 Gene3D G3DSA:1.10.10.10 1 57 1.7E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00565 7d3fe0a61c85f548d961e73fe2a3468f 836 Gene3D G3DSA:3.40.50.300 16 221 7.8E-46 T 12-10-2018 AMJ96_CH00565 7d3fe0a61c85f548d961e73fe2a3468f 836 Gene3D G3DSA:3.40.50.300 250 395 3.7E-25 T 12-10-2018 AMJ96_CH00565 7d3fe0a61c85f548d961e73fe2a3468f 836 SUPERFAMILY SSF52540 39 373 1.09E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00565 7d3fe0a61c85f548d961e73fe2a3468f 836 TIGRFAM TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated 15 830 0.0 T 12-10-2018 IPR026362 DEXH box helicase, DNA ligase-associated AMJ96_CH00565 7d3fe0a61c85f548d961e73fe2a3468f 836 Pfam PF00270 DEAD/DEAH box helicase 30 204 3.1E-24 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMJ96_CH00565 7d3fe0a61c85f548d961e73fe2a3468f 836 Pfam PF08494 DEAD/H associated 613 802 1.9E-47 T 12-10-2018 IPR013701 DEAD/H associated GO:0005524|GO:0016818 AMJ96_CH00565 7d3fe0a61c85f548d961e73fe2a3468f 836 SMART SM00490 280 365 4.2E-15 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH00565 7d3fe0a61c85f548d961e73fe2a3468f 836 PIRSF PIRSF037307 3 836 3.0E-216 T 12-10-2018 IPR017170 Lhr-like ATP-dependent RNA helicase, predicted GO:0005524|GO:0016818 AMJ96_CH00565 7d3fe0a61c85f548d961e73fe2a3468f 836 Pfam PF00271 Helicase conserved C-terminal domain 264 360 3.4E-15 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH00565 7d3fe0a61c85f548d961e73fe2a3468f 836 SMART SM00487 23 239 6.6E-27 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMJ96_CH02887 c5bd8d2310945f65732cac78dc06b44d 339 SUPERFAMILY SSF52540 5 247 8.12E-77 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02887 c5bd8d2310945f65732cac78dc06b44d 339 SUPERFAMILY SSF50331 259 335 3.68E-8 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH02887 c5bd8d2310945f65732cac78dc06b44d 339 Pfam PF00005 ABC transporter 22 166 1.6E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02887 c5bd8d2310945f65732cac78dc06b44d 339 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02887 c5bd8d2310945f65732cac78dc06b44d 339 Gene3D G3DSA:3.40.50.300 4 245 2.1E-68 T 12-10-2018 AMJ96_CH02887 c5bd8d2310945f65732cac78dc06b44d 339 SMART SM00382 29 216 2.5E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02887 c5bd8d2310945f65732cac78dc06b44d 339 Pfam PF08402 TOBE domain 276 335 1.6E-6 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_CH03512 9460a5900b93ffb70020df66fe05e6ef 323 Gene3D G3DSA:3.40.190.10 107 213 6.9E-58 T 12-10-2018 AMJ96_CH03512 9460a5900b93ffb70020df66fe05e6ef 323 SUPERFAMILY SSF53850 25 255 1.85E-30 T 12-10-2018 AMJ96_CH03512 9460a5900b93ffb70020df66fe05e6ef 323 Pfam PF09084 NMT1/THI5 like 37 254 9.2E-40 T 12-10-2018 IPR015168 SsuA/THI5-like AMJ96_CH03512 9460a5900b93ffb70020df66fe05e6ef 323 Gene3D G3DSA:3.40.190.10 28 282 6.9E-58 T 12-10-2018 AMJ96_CH00799 a4c3d9ae7dde1140f2a50249fd56a45f 321 Gene3D G3DSA:3.40.50.11190 1 128 4.4E-6 T 12-10-2018 AMJ96_CH00799 a4c3d9ae7dde1140f2a50249fd56a45f 321 SUPERFAMILY SSF53756 15 317 1.96E-10 T 12-10-2018 AMJ96_CH00799 a4c3d9ae7dde1140f2a50249fd56a45f 321 Gene3D G3DSA:3.40.50.2000 147 282 9.1E-23 T 12-10-2018 AMJ96_PD00123 d20e706e90f109905865da1bea6be627 240 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 63 79 7.1E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00123 d20e706e90f109905865da1bea6be627 240 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 63 7.1E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00123 d20e706e90f109905865da1bea6be627 240 Pfam PF07729 FCD domain 102 222 3.9E-21 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00123 d20e706e90f109905865da1bea6be627 240 Gene3D G3DSA:1.20.120.530 95 226 5.1E-24 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00123 d20e706e90f109905865da1bea6be627 240 SMART SM00895 99 223 1.9E-14 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00123 d20e706e90f109905865da1bea6be627 240 Pfam PF00392 Bacterial regulatory proteins, gntR family 28 89 1.0E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00123 d20e706e90f109905865da1bea6be627 240 Gene3D G3DSA:1.10.10.10 23 90 6.9E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00123 d20e706e90f109905865da1bea6be627 240 SUPERFAMILY SSF48008 96 225 2.28E-24 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00123 d20e706e90f109905865da1bea6be627 240 SMART SM00345 31 89 1.5E-14 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00123 d20e706e90f109905865da1bea6be627 240 SUPERFAMILY SSF46785 22 93 6.51E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00686 3f7fb0b2e81f8d0e65a63aa3a12ad45f 717 SUPERFAMILY SSF110849 15 118 8.55E-12 T 12-10-2018 IPR036086 ParB/Sulfiredoxin superfamily AMJ96_PD00686 3f7fb0b2e81f8d0e65a63aa3a12ad45f 717 Gene3D G3DSA:3.90.1530.30 28 102 5.6E-7 T 12-10-2018 AMJ96_PD00686 3f7fb0b2e81f8d0e65a63aa3a12ad45f 717 SMART SM00470 14 116 5.1E-5 T 12-10-2018 IPR003115 ParB/Sulfiredoxin AMJ96_PD00686 3f7fb0b2e81f8d0e65a63aa3a12ad45f 717 SUPERFAMILY SSF109709 109 206 1.18E-22 T 12-10-2018 AMJ96_PD00686 3f7fb0b2e81f8d0e65a63aa3a12ad45f 717 Pfam PF02195 ParB-like nuclease domain 16 104 1.0E-5 T 12-10-2018 IPR003115 ParB/Sulfiredoxin AMJ96_PD00686 3f7fb0b2e81f8d0e65a63aa3a12ad45f 717 Gene3D G3DSA:1.10.10.2830 106 208 2.3E-17 T 12-10-2018 AMJ96_PB00270 11d780e1c40694e409ef01fecda92a48 388 Pfam PF02371 Transposase IS116/IS110/IS902 family 258 336 9.4E-15 T 12-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AMJ96_PB00270 11d780e1c40694e409ef01fecda92a48 388 Pfam PF01548 Transposase 51 180 7.0E-9 T 12-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AMJ96_PD00115 11d780e1c40694e409ef01fecda92a48 388 Pfam PF02371 Transposase IS116/IS110/IS902 family 258 336 9.4E-15 T 12-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AMJ96_PD00115 11d780e1c40694e409ef01fecda92a48 388 Pfam PF01548 Transposase 51 180 7.0E-9 T 12-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AMJ96_CH01014 97753bf9d9f2ca573631aefae6139b57 204 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 176 189 3.1E-6 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH01014 97753bf9d9f2ca573631aefae6139b57 204 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 149 169 3.1E-6 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH01014 97753bf9d9f2ca573631aefae6139b57 204 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 5 16 3.1E-6 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH01014 97753bf9d9f2ca573631aefae6139b57 204 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 100 113 3.1E-6 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH01014 97753bf9d9f2ca573631aefae6139b57 204 Gene3D G3DSA:1.10.150.240 21 85 4.7E-32 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMJ96_CH01014 97753bf9d9f2ca573631aefae6139b57 204 SUPERFAMILY SSF56784 6 196 5.09E-32 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_CH01014 97753bf9d9f2ca573631aefae6139b57 204 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 71 186 4.4E-15 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH01014 97753bf9d9f2ca573631aefae6139b57 204 Gene3D G3DSA:3.40.50.1000 9 185 4.7E-32 T 12-10-2018 IPR023214 HAD superfamily AMJ96_CH01014 97753bf9d9f2ca573631aefae6139b57 204 Pfam PF13419 Haloacid dehalogenase-like hydrolase 67 185 7.5E-10 T 12-10-2018 AMJ96_CH04204 70dc55edbee73da9b0c2de78d8526709 525 SUPERFAMILY SSF52540 42 354 1.38E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04204 70dc55edbee73da9b0c2de78d8526709 525 SMART SM00382 99 301 7.9E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04204 70dc55edbee73da9b0c2de78d8526709 525 SUPERFAMILY SSF47446 327 431 8.99E-34 T 12-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AMJ96_CH04204 70dc55edbee73da9b0c2de78d8526709 525 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 5.5E-181 T 12-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 AMJ96_CH04204 70dc55edbee73da9b0c2de78d8526709 525 Gene3D G3DSA:1.20.120.140 4 306 9.7E-118 T 12-10-2018 AMJ96_CH04204 70dc55edbee73da9b0c2de78d8526709 525 SMART SM00962 100 296 1.6E-109 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMJ96_CH04204 70dc55edbee73da9b0c2de78d8526709 525 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 443 32.128 T 12-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 AMJ96_CH04204 70dc55edbee73da9b0c2de78d8526709 525 Pfam PF02978 Signal peptide binding domain 327 427 1.4E-29 T 12-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AMJ96_CH04204 70dc55edbee73da9b0c2de78d8526709 525 SMART SM00963 1 86 1.4E-33 T 12-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMJ96_CH04204 70dc55edbee73da9b0c2de78d8526709 525 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMJ96_CH04204 70dc55edbee73da9b0c2de78d8526709 525 Gene3D G3DSA:1.10.260.30 327 454 6.7E-38 T 12-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AMJ96_CH04204 70dc55edbee73da9b0c2de78d8526709 525 Pfam PF00448 SRP54-type protein, GTPase domain 100 296 6.7E-69 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMJ96_CH04204 70dc55edbee73da9b0c2de78d8526709 525 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 7.1E-22 T 12-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AMJ96_CH04204 70dc55edbee73da9b0c2de78d8526709 525 Gene3D G3DSA:3.40.50.300 90 285 9.7E-118 T 12-10-2018 AMJ96_CH00224 1318d996305a6cf1270da74df74bb6cc 315 Gene3D G3DSA:1.10.3720.10 85 304 1.9E-24 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00224 1318d996305a6cf1270da74df74bb6cc 315 SUPERFAMILY SSF161098 90 295 3.14E-20 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00224 1318d996305a6cf1270da74df74bb6cc 315 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 313 8.0E-36 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00436 e65ec4d19bee8b18df7cb08fd30d02ba 220 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 156 208 5.1E-5 T 12-10-2018 IPR039536 Transcriptional regulator TetR, C-terminal, Proteobacteria type AMJ96_PC00436 e65ec4d19bee8b18df7cb08fd30d02ba 220 SUPERFAMILY SSF46689 11 80 1.03E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PC00436 e65ec4d19bee8b18df7cb08fd30d02ba 220 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 3.2E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PC00436 e65ec4d19bee8b18df7cb08fd30d02ba 220 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 3.2E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PC00436 e65ec4d19bee8b18df7cb08fd30d02ba 220 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 69 4.5E-15 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PC00436 e65ec4d19bee8b18df7cb08fd30d02ba 220 Gene3D G3DSA:1.10.357.10 8 213 1.7E-42 T 12-10-2018 AMJ96_CH02194 8f3b11a0bad00ce9f8101db08f37ba79 353 SUPERFAMILY SSF48452 171 325 2.66E-20 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02194 8f3b11a0bad00ce9f8101db08f37ba79 353 Gene3D G3DSA:1.25.40.10 134 342 3.4E-26 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02194 8f3b11a0bad00ce9f8101db08f37ba79 353 Pfam PF13181 Tetratricopeptide repeat 194 221 0.074 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02194 8f3b11a0bad00ce9f8101db08f37ba79 353 SMART SM00028 189 222 22.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02194 8f3b11a0bad00ce9f8101db08f37ba79 353 SMART SM00028 258 291 36.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02194 8f3b11a0bad00ce9f8101db08f37ba79 353 SMART SM00028 223 256 100.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02662 70a72d079820fd29a09d815417810bdd 673 Gene3D G3DSA:3.40.50.300 333 531 3.0E-14 T 12-10-2018 AMJ96_CH02662 70a72d079820fd29a09d815417810bdd 673 SUPERFAMILY SSF52540 333 527 1.12E-7 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00522 662c1d3a706394907c2d1af1e439b293 377 Gene3D G3DSA:2.40.37.10 26 376 2.4E-112 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMJ96_PD00522 662c1d3a706394907c2d1af1e439b293 377 Gene3D G3DSA:3.20.20.10 27 238 2.4E-112 T 12-10-2018 IPR029066 PLP-binding barrel AMJ96_PD00522 662c1d3a706394907c2d1af1e439b293 377 SMART SM01005 251 377 7.0E-53 T 12-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_PD00522 662c1d3a706394907c2d1af1e439b293 377 Pfam PF00842 Alanine racemase, C-terminal domain 251 376 4.3E-36 T 12-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_PD00522 662c1d3a706394907c2d1af1e439b293 377 PRINTS PR00992 Alanine racemase signature 267 282 2.3E-41 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_PD00522 662c1d3a706394907c2d1af1e439b293 377 PRINTS PR00992 Alanine racemase signature 141 153 2.3E-41 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_PD00522 662c1d3a706394907c2d1af1e439b293 377 PRINTS PR00992 Alanine racemase signature 305 322 2.3E-41 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_PD00522 662c1d3a706394907c2d1af1e439b293 377 PRINTS PR00992 Alanine racemase signature 43 59 2.3E-41 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_PD00522 662c1d3a706394907c2d1af1e439b293 377 PRINTS PR00992 Alanine racemase signature 213 240 2.3E-41 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_PD00522 662c1d3a706394907c2d1af1e439b293 377 PRINTS PR00992 Alanine racemase signature 175 186 2.3E-41 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_PD00522 662c1d3a706394907c2d1af1e439b293 377 PRINTS PR00992 Alanine racemase signature 284 299 2.3E-41 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_PD00522 662c1d3a706394907c2d1af1e439b293 377 PRINTS PR00992 Alanine racemase signature 359 372 2.3E-41 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_PD00522 662c1d3a706394907c2d1af1e439b293 377 SUPERFAMILY SSF50621 246 376 6.63E-41 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMJ96_PD00522 662c1d3a706394907c2d1af1e439b293 377 TIGRFAM TIGR00492 alr: alanine racemase 23 376 1.0E-70 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_PD00522 662c1d3a706394907c2d1af1e439b293 377 Hamap MF_01201 Alanine racemase. 18 377 29.208 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_PD00522 662c1d3a706394907c2d1af1e439b293 377 SUPERFAMILY SSF51419 25 251 3.63E-54 T 12-10-2018 IPR029066 PLP-binding barrel AMJ96_PD00522 662c1d3a706394907c2d1af1e439b293 377 Pfam PF01168 Alanine racemase, N-terminal domain 25 240 1.4E-56 T 12-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_PD00522 662c1d3a706394907c2d1af1e439b293 377 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 48 58 - T 12-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_CH04110 adf39e23f6b33e570ed16255388101a5 156 Pfam PF00376 MerR family regulatory protein 14 50 1.2E-11 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH04110 adf39e23f6b33e570ed16255388101a5 156 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 13 152 5.5E-68 T 12-10-2018 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 AMJ96_CH04110 adf39e23f6b33e570ed16255388101a5 156 SMART SM00422 13 81 6.8E-23 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH04110 adf39e23f6b33e570ed16255388101a5 156 ProSitePatterns PS00552 MerR-type HTH domain signature. 16 38 - T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH04110 adf39e23f6b33e570ed16255388101a5 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 25 2.3E-12 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH04110 adf39e23f6b33e570ed16255388101a5 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 25 38 2.3E-12 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH04110 adf39e23f6b33e570ed16255388101a5 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 48 68 2.3E-12 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH04110 adf39e23f6b33e570ed16255388101a5 156 Pfam PF09278 MerR, DNA binding 55 120 1.8E-17 T 12-10-2018 IPR015358 Transcription regulator MerR, DNA binding AMJ96_CH04110 adf39e23f6b33e570ed16255388101a5 156 SUPERFAMILY SSF46955 13 136 5.13E-28 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily AMJ96_CH04110 adf39e23f6b33e570ed16255388101a5 156 Gene3D G3DSA:1.10.1660.10 8 136 2.4E-32 T 12-10-2018 AMJ96_CH01530 f9d16b2cfd8fdc57d03717a890dbd0ea 389 TIGRFAM TIGR02318 phosphono_phnM: phosphonate metabolism protein PhnM 2 376 4.2E-143 T 12-10-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_CH01530 f9d16b2cfd8fdc57d03717a890dbd0ea 389 Gene3D G3DSA:3.20.20.140 1 183 4.7E-9 T 12-10-2018 AMJ96_CH01530 f9d16b2cfd8fdc57d03717a890dbd0ea 389 SUPERFAMILY SSF51556 50 340 8.26E-7 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_CH01530 f9d16b2cfd8fdc57d03717a890dbd0ea 389 SUPERFAMILY SSF51338 3 385 7.52E-14 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH01530 f9d16b2cfd8fdc57d03717a890dbd0ea 389 Pfam PF01979 Amidohydrolase family 282 361 2.8E-5 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMJ96_CH01530 f9d16b2cfd8fdc57d03717a890dbd0ea 389 PIRSF PIRSF038971 1 376 5.2E-103 T 12-10-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_CH01530 f9d16b2cfd8fdc57d03717a890dbd0ea 389 Gene3D G3DSA:2.30.40.10 340 375 1.6E-7 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH01530 f9d16b2cfd8fdc57d03717a890dbd0ea 389 Gene3D G3DSA:3.20.20.140 325 339 1.6E-7 T 12-10-2018 AMJ96_CH00279 0fc3165931afcafa46924d4f9104fb78 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 1.5E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH00279 0fc3165931afcafa46924d4f9104fb78 302 Gene3D G3DSA:3.40.190.10 166 268 7.6E-57 T 12-10-2018 AMJ96_CH00279 0fc3165931afcafa46924d4f9104fb78 302 SUPERFAMILY SSF46785 6 90 2.95E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00279 0fc3165931afcafa46924d4f9104fb78 302 Gene3D G3DSA:1.10.10.10 4 91 5.0E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00279 0fc3165931afcafa46924d4f9104fb78 302 Gene3D G3DSA:3.40.190.10 94 292 7.6E-57 T 12-10-2018 AMJ96_CH00279 0fc3165931afcafa46924d4f9104fb78 302 SUPERFAMILY SSF53850 90 296 2.17E-38 T 12-10-2018 AMJ96_CH00279 0fc3165931afcafa46924d4f9104fb78 302 Pfam PF03466 LysR substrate binding domain 90 293 2.5E-35 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH01349 3a28ea5ce51fe8b477bfb0d6e666882e 554 SUPERFAMILY SSF54373 215 310 2.98E-36 T 12-10-2018 AMJ96_CH01349 3a28ea5ce51fe8b477bfb0d6e666882e 554 SUPERFAMILY SSF51905 9 453 1.93E-55 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01349 3a28ea5ce51fe8b477bfb0d6e666882e 554 Pfam PF13450 NAD(P)-binding Rossmann-like domain 19 62 1.4E-7 T 12-10-2018 AMJ96_CH01349 3a28ea5ce51fe8b477bfb0d6e666882e 554 Gene3D G3DSA:3.50.50.60 14 388 9.1E-187 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01349 3a28ea5ce51fe8b477bfb0d6e666882e 554 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 451 551 6.2E-49 T 12-10-2018 AMJ96_CH01349 3a28ea5ce51fe8b477bfb0d6e666882e 554 Gene3D G3DSA:3.30.9.90 83 455 9.1E-187 T 12-10-2018 AMJ96_CH01349 3a28ea5ce51fe8b477bfb0d6e666882e 554 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 182 197 4.4E-5 T 12-10-2018 AMJ96_CH01349 3a28ea5ce51fe8b477bfb0d6e666882e 554 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 16 38 4.4E-5 T 12-10-2018 AMJ96_CH01349 3a28ea5ce51fe8b477bfb0d6e666882e 554 Gene3D G3DSA:3.30.70.20 456 549 2.6E-37 T 12-10-2018 AMJ96_CH01349 3a28ea5ce51fe8b477bfb0d6e666882e 554 SUPERFAMILY SSF54862 455 554 4.42E-29 T 12-10-2018 AMJ96_CH02718 18c0150a0392e6ba357c544101c2619e 1002 Gene3D G3DSA:4.10.860.10 786 833 5.9E-9 T 12-10-2018 AMJ96_CH02718 18c0150a0392e6ba357c544101c2619e 1002 SUPERFAMILY SSF52540 196 747 1.42E-36 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02718 18c0150a0392e6ba357c544101c2619e 1002 Pfam PF12344 Ultra-violet resistance protein B 715 756 5.2E-21 T 12-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain AMJ96_CH02718 18c0150a0392e6ba357c544101c2619e 1002 Gene3D G3DSA:3.40.50.300 578 759 1.5E-48 T 12-10-2018 AMJ96_CH02718 18c0150a0392e6ba357c544101c2619e 1002 Pfam PF00271 Helicase conserved C-terminal domain 604 707 5.7E-17 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH02718 18c0150a0392e6ba357c544101c2619e 1002 Hamap MF_00204 UvrABC system protein B [uvrB]. 166 828 41.423 T 12-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 AMJ96_CH02718 18c0150a0392e6ba357c544101c2619e 1002 Gene3D G3DSA:3.40.50.300 438 577 2.9E-46 T 12-10-2018 AMJ96_CH02718 18c0150a0392e6ba357c544101c2619e 1002 Pfam PF02151 UvrB/uvrC motif 796 827 4.2E-9 T 12-10-2018 IPR001943 UVR domain GO:0005515 AMJ96_CH02718 18c0150a0392e6ba357c544101c2619e 1002 Gene3D G3DSA:3.40.50.300 162 398 2.5E-74 T 12-10-2018 AMJ96_CH02718 18c0150a0392e6ba357c544101c2619e 1002 SMART SM00487 172 589 3.3E-25 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMJ96_CH02718 18c0150a0392e6ba357c544101c2619e 1002 SMART SM00490 623 709 4.1E-18 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH02718 18c0150a0392e6ba357c544101c2619e 1002 SUPERFAMILY SSF52540 172 576 2.11E-131 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02718 18c0150a0392e6ba357c544101c2619e 1002 SUPERFAMILY SSF46600 787 828 1.83E-10 T 12-10-2018 IPR036876 UVR domain superfamily AMJ96_CH02718 18c0150a0392e6ba357c544101c2619e 1002 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 169 826 0.0 T 12-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 AMJ96_CH02718 18c0150a0392e6ba357c544101c2619e 1002 Pfam PF04851 Type III restriction enzyme, res subunit 176 302 2.3E-12 T 12-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AMJ96_PB00162 c078b0416cc3344b0cbce8fbf6d3e3d5 169 SUPERFAMILY SSF50475 9 160 2.55E-42 T 12-10-2018 AMJ96_PB00162 c078b0416cc3344b0cbce8fbf6d3e3d5 169 Pfam PF01613 Flavin reductase like domain 16 158 7.2E-26 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AMJ96_PB00162 c078b0416cc3344b0cbce8fbf6d3e3d5 169 Gene3D G3DSA:2.30.110.10 1 165 1.3E-38 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMJ96_PB00162 c078b0416cc3344b0cbce8fbf6d3e3d5 169 SMART SM00903 16 160 5.4E-41 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AMJ96_CH03269 55037893763ec1b133bd58259836c219 315 Pfam PF01548 Transposase 9 148 4.7E-25 T 12-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AMJ96_CH03269 55037893763ec1b133bd58259836c219 315 Pfam PF02371 Transposase IS116/IS110/IS902 family 190 272 1.3E-20 T 12-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AMJ96_CH02833 55037893763ec1b133bd58259836c219 315 Pfam PF01548 Transposase 9 148 4.7E-25 T 12-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AMJ96_CH02833 55037893763ec1b133bd58259836c219 315 Pfam PF02371 Transposase IS116/IS110/IS902 family 190 272 1.3E-20 T 12-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AMJ96_PD00048 55037893763ec1b133bd58259836c219 315 Pfam PF01548 Transposase 9 148 4.7E-25 T 12-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AMJ96_PD00048 55037893763ec1b133bd58259836c219 315 Pfam PF02371 Transposase IS116/IS110/IS902 family 190 272 1.3E-20 T 12-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AMJ96_CH00547 55037893763ec1b133bd58259836c219 315 Pfam PF01548 Transposase 9 148 4.7E-25 T 12-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AMJ96_CH00547 55037893763ec1b133bd58259836c219 315 Pfam PF02371 Transposase IS116/IS110/IS902 family 190 272 1.3E-20 T 12-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AMJ96_CH02529 55037893763ec1b133bd58259836c219 315 Pfam PF01548 Transposase 9 148 4.7E-25 T 12-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AMJ96_CH02529 55037893763ec1b133bd58259836c219 315 Pfam PF02371 Transposase IS116/IS110/IS902 family 190 272 1.3E-20 T 12-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AMJ96_CH01837 06ba4fe11d70807f1dcfa35645b3dad3 195 Pfam PF03861 ANTAR domain 136 188 3.9E-21 T 12-10-2018 IPR005561 ANTAR domain GO:0003723 AMJ96_CH01837 06ba4fe11d70807f1dcfa35645b3dad3 195 Gene3D G3DSA:1.10.10.10 135 193 6.4E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01837 06ba4fe11d70807f1dcfa35645b3dad3 195 PIRSF PIRSF036382 1 195 4.2E-69 T 12-10-2018 IPR008327 Signal transduction response regulator, antiterminator AMJ96_CH01837 06ba4fe11d70807f1dcfa35645b3dad3 195 SMART SM01012 133 188 2.8E-25 T 12-10-2018 IPR005561 ANTAR domain GO:0003723 AMJ96_CH01837 06ba4fe11d70807f1dcfa35645b3dad3 195 Gene3D G3DSA:3.40.50.2300 1 134 1.2E-13 T 12-10-2018 AMJ96_CH01837 06ba4fe11d70807f1dcfa35645b3dad3 195 Pfam PF00072 Response regulator receiver domain 8 111 1.2E-8 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01837 06ba4fe11d70807f1dcfa35645b3dad3 195 SMART SM00448 6 117 0.0059 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01837 06ba4fe11d70807f1dcfa35645b3dad3 195 SUPERFAMILY SSF52172 4 188 2.56E-50 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PC00017 40de727bc28ed02818fd395884dedf14 204 SUPERFAMILY SSF48498 96 198 4.11E-15 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_PC00017 40de727bc28ed02818fd395884dedf14 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 32 76 3.1E-13 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PC00017 40de727bc28ed02818fd395884dedf14 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 51 74 3.7E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PC00017 40de727bc28ed02818fd395884dedf14 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 44 3.7E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PC00017 40de727bc28ed02818fd395884dedf14 204 SUPERFAMILY SSF46689 18 97 7.48E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PC00017 40de727bc28ed02818fd395884dedf14 204 Gene3D G3DSA:1.10.357.10 12 204 3.0E-50 T 12-10-2018 AMJ96_CH00904 e2dbe442196366241e749641f45087eb 183 Pfam PF04011 LemA family 3 183 9.6E-67 T 12-10-2018 IPR007156 LemA AMJ96_CH00904 e2dbe442196366241e749641f45087eb 183 SUPERFAMILY SSF140478 22 171 1.24E-53 T 12-10-2018 IPR023353 LemA-like domain superfamily AMJ96_CH00904 e2dbe442196366241e749641f45087eb 183 Gene3D G3DSA:1.20.1440.20 11 183 1.1E-61 T 12-10-2018 IPR023353 LemA-like domain superfamily AMJ96_CH02022 6f29e1c4512c35e43d54b85b7956ff10 308 Gene3D G3DSA:3.40.190.10 165 269 5.5E-61 T 12-10-2018 AMJ96_CH02022 6f29e1c4512c35e43d54b85b7956ff10 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 68 1.1E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02022 6f29e1c4512c35e43d54b85b7956ff10 308 SUPERFAMILY SSF53850 95 300 7.96E-42 T 12-10-2018 AMJ96_CH02022 6f29e1c4512c35e43d54b85b7956ff10 308 SUPERFAMILY SSF46785 5 83 1.2E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02022 6f29e1c4512c35e43d54b85b7956ff10 308 Pfam PF03466 LysR substrate binding domain 94 299 5.1E-39 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH02022 6f29e1c4512c35e43d54b85b7956ff10 308 Gene3D G3DSA:1.10.10.10 5 97 1.8E-16 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02022 6f29e1c4512c35e43d54b85b7956ff10 308 Gene3D G3DSA:3.40.190.10 105 296 5.5E-61 T 12-10-2018 AMJ96_CH02022 6f29e1c4512c35e43d54b85b7956ff10 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 7.0E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02022 6f29e1c4512c35e43d54b85b7956ff10 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 7.0E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02022 6f29e1c4512c35e43d54b85b7956ff10 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 7.0E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03759 9f70f9d82408cddb8eb097ebacf620a4 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 62 78 5.8E-55 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH03759 9f70f9d82408cddb8eb097ebacf620a4 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 179 200 5.8E-55 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH03759 9f70f9d82408cddb8eb097ebacf620a4 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 83 99 5.8E-55 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH03759 9f70f9d82408cddb8eb097ebacf620a4 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 40 60 5.8E-55 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH03759 9f70f9d82408cddb8eb097ebacf620a4 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 132 155 5.8E-55 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH03759 9f70f9d82408cddb8eb097ebacf620a4 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 210 234 5.8E-55 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH03759 9f70f9d82408cddb8eb097ebacf620a4 266 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 213 227 - T 12-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 AMJ96_CH03759 9f70f9d82408cddb8eb097ebacf620a4 266 PRINTS PR01959 SuhB family inositol monophosphatase signature 19 41 5.2E-23 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 AMJ96_CH03759 9f70f9d82408cddb8eb097ebacf620a4 266 PRINTS PR01959 SuhB family inositol monophosphatase signature 200 212 5.2E-23 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 AMJ96_CH03759 9f70f9d82408cddb8eb097ebacf620a4 266 PRINTS PR01959 SuhB family inositol monophosphatase signature 106 125 5.2E-23 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 AMJ96_CH03759 9f70f9d82408cddb8eb097ebacf620a4 266 PRINTS PR01959 SuhB family inositol monophosphatase signature 158 184 5.2E-23 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 AMJ96_CH03759 9f70f9d82408cddb8eb097ebacf620a4 266 Gene3D G3DSA:3.40.190.80 143 263 9.0E-35 T 12-10-2018 AMJ96_CH03759 9f70f9d82408cddb8eb097ebacf620a4 266 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 83 96 - T 12-10-2018 IPR020583 Inositol monophosphatase, metal-binding site AMJ96_CH03759 9f70f9d82408cddb8eb097ebacf620a4 266 SUPERFAMILY SSF56655 5 261 1.83E-84 T 12-10-2018 AMJ96_CH03759 9f70f9d82408cddb8eb097ebacf620a4 266 Pfam PF00459 Inositol monophosphatase family 5 259 6.9E-59 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH03759 9f70f9d82408cddb8eb097ebacf620a4 266 Gene3D G3DSA:3.30.540.10 1 142 9.0E-56 T 12-10-2018 AMJ96_CH00451 7ca3e0c5e65643af149fdf3e8ca48b07 217 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 21 211 26.498 T 12-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 AMJ96_CH00451 7ca3e0c5e65643af149fdf3e8ca48b07 217 Gene3D G3DSA:3.40.50.300 11 213 5.2E-49 T 12-10-2018 AMJ96_CH00451 7ca3e0c5e65643af149fdf3e8ca48b07 217 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 15 207 1.5E-59 T 12-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 AMJ96_CH00451 7ca3e0c5e65643af149fdf3e8ca48b07 217 SUPERFAMILY SSF52540 22 209 8.42E-34 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00451 7ca3e0c5e65643af149fdf3e8ca48b07 217 Pfam PF01926 50S ribosome-binding GTPase 32 159 2.2E-20 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 AMJ96_CH01862 b616a0946594a7987529efd266e00d4e 415 Gene3D G3DSA:2.40.160.60 37 404 1.8E-33 T 12-10-2018 AMJ96_CH01862 b616a0946594a7987529efd266e00d4e 415 SUPERFAMILY SSF56935 22 400 2.15E-51 T 12-10-2018 AMJ96_CH01862 b616a0946594a7987529efd266e00d4e 415 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 43 329 7.6E-19 T 12-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMJ96_CH01348 3c08e38e7b5270b22e5fff91271eb4d7 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 4.2E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01348 3c08e38e7b5270b22e5fff91271eb4d7 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.2E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01348 3c08e38e7b5270b22e5fff91271eb4d7 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 4.2E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01348 3c08e38e7b5270b22e5fff91271eb4d7 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 4.2E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01348 3c08e38e7b5270b22e5fff91271eb4d7 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 4.2E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01348 3c08e38e7b5270b22e5fff91271eb4d7 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 4.2E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01348 3c08e38e7b5270b22e5fff91271eb4d7 262 SUPERFAMILY SSF51735 6 258 3.59E-63 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01348 3c08e38e7b5270b22e5fff91271eb4d7 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 258 4.9E-42 T 12-10-2018 AMJ96_CH01348 3c08e38e7b5270b22e5fff91271eb4d7 262 Gene3D G3DSA:3.40.50.720 1 260 7.4E-63 T 12-10-2018 AMJ96_PD00225 d56404b9848928648b7b372262d5c53d 358 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00225 d56404b9848928648b7b372262d5c53d 358 Pfam PF00005 ABC transporter 22 164 2.6E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00225 d56404b9848928648b7b372262d5c53d 358 SUPERFAMILY SSF50331 239 358 6.8E-25 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_PD00225 d56404b9848928648b7b372262d5c53d 358 SMART SM00382 31 214 1.5E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00225 d56404b9848928648b7b372262d5c53d 358 Gene3D G3DSA:3.40.50.300 6 224 1.6E-64 T 12-10-2018 AMJ96_PD00225 d56404b9848928648b7b372262d5c53d 358 SUPERFAMILY SSF52540 7 245 4.2E-84 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00225 d56404b9848928648b7b372262d5c53d 358 Gene3D G3DSA:2.40.50.140 288 342 5.8E-32 T 12-10-2018 AMJ96_PD00225 d56404b9848928648b7b372262d5c53d 358 Pfam PF08402 TOBE domain 282 350 1.0E-6 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_PD00225 d56404b9848928648b7b372262d5c53d 358 Gene3D G3DSA:2.40.50.940 225 351 5.8E-32 T 12-10-2018 AMJ96_CH03238 dcdebc6df9b240bf10f2aa6f415ba0f1 124 SUPERFAMILY SSF55785 9 104 5.58E-6 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH03238 dcdebc6df9b240bf10f2aa6f415ba0f1 124 Pfam PF08447 PAS fold 21 99 1.9E-6 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 AMJ96_CH03238 dcdebc6df9b240bf10f2aa6f415ba0f1 124 Gene3D G3DSA:3.30.450.20 4 106 3.7E-11 T 12-10-2018 AMJ96_CH03910 99be6f923bb07c67de83c5de38ededc4 498 SUPERFAMILY SSF55681 154 493 5.97E-109 T 12-10-2018 AMJ96_CH03910 99be6f923bb07c67de83c5de38ededc4 498 Gene3D G3DSA:2.40.50.140 3 148 1.7E-39 T 12-10-2018 AMJ96_CH03910 99be6f923bb07c67de83c5de38ededc4 498 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 17 496 39.637 T 12-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMJ96_CH03910 99be6f923bb07c67de83c5de38ededc4 498 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 12 495 3.4E-175 T 12-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMJ96_CH03910 99be6f923bb07c67de83c5de38ededc4 498 SUPERFAMILY SSF50249 13 147 6.86E-32 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH03910 99be6f923bb07c67de83c5de38ededc4 498 Pfam PF01336 OB-fold nucleic acid binding domain 63 138 6.4E-13 T 12-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AMJ96_CH03910 99be6f923bb07c67de83c5de38ededc4 498 Pfam PF00152 tRNA synthetases class II (D, K and N) 155 492 4.3E-79 T 12-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH03910 99be6f923bb07c67de83c5de38ededc4 498 Gene3D G3DSA:3.30.930.10 149 492 4.2E-125 T 12-10-2018 AMJ96_CH03910 99be6f923bb07c67de83c5de38ededc4 498 PRINTS PR00982 Lysyl-tRNA synthetase signature 255 272 2.2E-28 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMJ96_CH03910 99be6f923bb07c67de83c5de38ededc4 498 PRINTS PR00982 Lysyl-tRNA synthetase signature 378 394 2.2E-28 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMJ96_CH03910 99be6f923bb07c67de83c5de38ededc4 498 PRINTS PR00982 Lysyl-tRNA synthetase signature 191 201 2.2E-28 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMJ96_CH03910 99be6f923bb07c67de83c5de38ededc4 498 PRINTS PR00982 Lysyl-tRNA synthetase signature 207 223 2.2E-28 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMJ96_CH03910 99be6f923bb07c67de83c5de38ededc4 498 PRINTS PR00982 Lysyl-tRNA synthetase signature 237 250 2.2E-28 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AMJ96_CH02922 fcc779a29b4e380e6de140fe42251f5b 348 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 143 6.5E-23 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_CH02922 fcc779a29b4e380e6de140fe42251f5b 348 SUPERFAMILY SSF50129 9 171 3.2E-47 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_CH02922 fcc779a29b4e380e6de140fe42251f5b 348 Gene3D G3DSA:3.40.50.720 159 313 1.9E-133 T 12-10-2018 AMJ96_CH02922 fcc779a29b4e380e6de140fe42251f5b 348 Gene3D G3DSA:3.90.180.10 12 341 1.9E-133 T 12-10-2018 AMJ96_CH02922 fcc779a29b4e380e6de140fe42251f5b 348 SMART SM00829 8 341 7.3E-4 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_CH02922 fcc779a29b4e380e6de140fe42251f5b 348 SUPERFAMILY SSF51735 148 311 1.72E-39 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02922 fcc779a29b4e380e6de140fe42251f5b 348 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMJ96_CH02922 fcc779a29b4e380e6de140fe42251f5b 348 Pfam PF00107 Zinc-binding dehydrogenase 185 306 5.1E-18 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_PA00218 43239f93e0bbd7165b708e28bbf3e124 241 Gene3D G3DSA:1.10.3720.10 19 238 3.9E-44 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00218 43239f93e0bbd7165b708e28bbf3e124 241 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 47 235 1.7E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PA00218 43239f93e0bbd7165b708e28bbf3e124 241 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 22 128 5.4E-15 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_PA00218 43239f93e0bbd7165b708e28bbf3e124 241 SUPERFAMILY SSF161098 21 219 4.58E-36 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03134 70d21902e7b59123c688c790782b1ff7 349 SUPERFAMILY SSF53756 10 346 2.32E-62 T 12-10-2018 AMJ96_CH03134 70d21902e7b59123c688c790782b1ff7 349 Pfam PF00534 Glycosyl transferases group 1 161 319 2.4E-38 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 AMJ96_CH03134 70d21902e7b59123c688c790782b1ff7 349 Gene3D G3DSA:3.40.50.2000 33 340 8.8E-54 T 12-10-2018 AMJ96_CH03134 70d21902e7b59123c688c790782b1ff7 349 Gene3D G3DSA:3.40.50.2000 140 323 8.8E-54 T 12-10-2018 AMJ96_CH02359 2946f1d4e1ca2c09d3c01dc37df79b6d 244 SUPERFAMILY SSF48008 98 237 1.67E-18 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH02359 2946f1d4e1ca2c09d3c01dc37df79b6d 244 SMART SM00345 33 91 3.8E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02359 2946f1d4e1ca2c09d3c01dc37df79b6d 244 SUPERFAMILY SSF46785 28 95 2.3E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02359 2946f1d4e1ca2c09d3c01dc37df79b6d 244 Gene3D G3DSA:1.10.10.10 26 92 2.1E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02359 2946f1d4e1ca2c09d3c01dc37df79b6d 244 Gene3D G3DSA:1.20.120.530 96 242 8.0E-24 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH02359 2946f1d4e1ca2c09d3c01dc37df79b6d 244 Pfam PF07729 FCD domain 102 229 1.0E-18 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH02359 2946f1d4e1ca2c09d3c01dc37df79b6d 244 SMART SM00895 101 229 2.2E-13 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH02359 2946f1d4e1ca2c09d3c01dc37df79b6d 244 Pfam PF00392 Bacterial regulatory proteins, gntR family 31 91 5.1E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH01251 339530f777b2c5b8d2b52f052ecc3c27 202 Pfam PF13460 NAD(P)H-binding 7 190 2.0E-30 T 12-10-2018 IPR016040 NAD(P)-binding domain AMJ96_CH01251 339530f777b2c5b8d2b52f052ecc3c27 202 Gene3D G3DSA:3.40.50.720 2 201 2.3E-48 T 12-10-2018 AMJ96_CH01251 339530f777b2c5b8d2b52f052ecc3c27 202 SUPERFAMILY SSF51735 1 201 8.56E-35 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PB00381 f41d07a933be6549acc59f50ad158475 450 Gene3D G3DSA:3.80.30.20 1 359 2.9E-99 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMJ96_PB00381 f41d07a933be6549acc59f50ad158475 450 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 3 442 2.5E-125 T 12-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 AMJ96_PB00381 f41d07a933be6549acc59f50ad158475 450 Gene3D G3DSA:1.10.10.920 360 449 1.7E-15 T 12-10-2018 AMJ96_PB00381 f41d07a933be6549acc59f50ad158475 450 Pfam PF04055 Radical SAM superfamily 53 224 8.2E-20 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMJ96_PB00381 f41d07a933be6549acc59f50ad158475 450 SMART SM00729 47 268 2.3E-46 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMJ96_PB00381 f41d07a933be6549acc59f50ad158475 450 PIRSF PIRSF000167 1 450 5.6E-163 T 12-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 AMJ96_PB00381 f41d07a933be6549acc59f50ad158475 450 SUPERFAMILY SSF102114 8 439 6.15E-114 T 12-10-2018 AMJ96_PB00381 f41d07a933be6549acc59f50ad158475 450 Pfam PF06969 HemN C-terminal domain 359 426 5.3E-7 T 12-10-2018 IPR010723 HemN, C-terminal AMJ96_PA00197 8be815e1be9c1e5e5cd7c2f347f803cd 308 Gene3D G3DSA:2.120.10.30 9 307 2.1E-103 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMJ96_PA00197 8be815e1be9c1e5e5cd7c2f347f803cd 308 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 168 190 5.7E-7 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_PA00197 8be815e1be9c1e5e5cd7c2f347f803cd 308 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 274 292 5.7E-7 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_PA00197 8be815e1be9c1e5e5cd7c2f347f803cd 308 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 37 54 5.7E-7 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_PA00197 8be815e1be9c1e5e5cd7c2f347f803cd 308 SUPERFAMILY SSF63829 10 304 4.14E-65 T 12-10-2018 AMJ96_PA00197 8be815e1be9c1e5e5cd7c2f347f803cd 308 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 38 292 7.3E-58 T 12-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region AMJ96_CH04236 76a88754fd7a259e03e3d8055f3d2997 513 SMART SM00382 297 492 2.5E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04236 76a88754fd7a259e03e3d8055f3d2997 513 SMART SM00382 48 237 1.3E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04236 76a88754fd7a259e03e3d8055f3d2997 513 Gene3D G3DSA:3.40.50.300 11 270 1.4E-53 T 12-10-2018 AMJ96_CH04236 76a88754fd7a259e03e3d8055f3d2997 513 Pfam PF00005 ABC transporter 289 443 2.2E-20 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH04236 76a88754fd7a259e03e3d8055f3d2997 513 Gene3D G3DSA:3.40.50.300 279 511 9.3E-45 T 12-10-2018 AMJ96_CH04236 76a88754fd7a259e03e3d8055f3d2997 513 SUPERFAMILY SSF52540 22 247 1.01E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04236 76a88754fd7a259e03e3d8055f3d2997 513 Pfam PF00005 ABC transporter 39 189 3.3E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH04236 76a88754fd7a259e03e3d8055f3d2997 513 ProSitePatterns PS00211 ABC transporters family signature. 416 430 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH04236 76a88754fd7a259e03e3d8055f3d2997 513 SUPERFAMILY SSF52540 257 502 2.24E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02050 48edcd459d2dfb463801bc1440195e6b 478 Gene3D G3DSA:3.40.50.720 8 119 5.4E-22 T 12-10-2018 AMJ96_CH02050 48edcd459d2dfb463801bc1440195e6b 478 Gene3D G3DSA:3.30.950.10 338 470 3.1E-33 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AMJ96_CH02050 48edcd459d2dfb463801bc1440195e6b 478 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 222 456 8.1E-88 T 12-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMJ96_CH02050 48edcd459d2dfb463801bc1440195e6b 478 Gene3D G3DSA:3.30.160.110 120 154 7.0E-11 T 12-10-2018 AMJ96_CH02050 48edcd459d2dfb463801bc1440195e6b 478 Pfam PF13241 Putative NAD(P)-binding 14 122 2.7E-18 T 12-10-2018 AMJ96_CH02050 48edcd459d2dfb463801bc1440195e6b 478 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 302 335 - T 12-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMJ96_CH02050 48edcd459d2dfb463801bc1440195e6b 478 Gene3D G3DSA:3.40.1010.10 220 337 2.1E-43 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMJ96_CH02050 48edcd459d2dfb463801bc1440195e6b 478 PIRSF PIRSF036426 8 470 1.2E-166 T 12-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMJ96_CH02050 48edcd459d2dfb463801bc1440195e6b 478 Pfam PF10414 Sirohaem synthase dimerisation region 157 214 2.7E-18 T 12-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMJ96_CH02050 48edcd459d2dfb463801bc1440195e6b 478 SUPERFAMILY SSF75615 121 215 2.62E-23 T 12-10-2018 AMJ96_CH02050 48edcd459d2dfb463801bc1440195e6b 478 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 227 241 - T 12-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMJ96_CH02050 48edcd459d2dfb463801bc1440195e6b 478 SUPERFAMILY SSF51735 9 119 5.25E-14 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02050 48edcd459d2dfb463801bc1440195e6b 478 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 11 212 1.9E-61 T 12-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMJ96_CH02050 48edcd459d2dfb463801bc1440195e6b 478 Gene3D G3DSA:1.10.8.210 156 218 4.1E-7 T 12-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMJ96_CH02050 48edcd459d2dfb463801bc1440195e6b 478 SUPERFAMILY SSF53790 216 455 8.9E-74 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMJ96_CH02050 48edcd459d2dfb463801bc1440195e6b 478 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 223 433 1.1E-48 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMJ96_PA00025 ce3ba687661e7ba267fb59fd4c5ac6f8 200 Gene3D G3DSA:3.30.1330.110 1 192 1.1E-66 T 12-10-2018 IPR035936 BB2672 superfamily AMJ96_PA00025 ce3ba687661e7ba267fb59fd4c5ac6f8 200 SUPERFAMILY SSF160519 1 193 2.75E-69 T 12-10-2018 IPR035936 BB2672 superfamily AMJ96_PA00025 ce3ba687661e7ba267fb59fd4c5ac6f8 200 Pfam PF06684 Amino acid synthesis 5 181 4.6E-65 T 12-10-2018 IPR009569 Amino acid synthesis, putative AMJ96_CH02166 4b98a14ef7e67c075a07ec75794f1f14 170 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 170 3.3E-49 T 12-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AMJ96_CH02166 4b98a14ef7e67c075a07ec75794f1f14 170 SUPERFAMILY SSF50249 4 170 3.77E-52 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH02166 4b98a14ef7e67c075a07ec75794f1f14 170 Gene3D G3DSA:2.40.50.140 2 115 2.3E-47 T 12-10-2018 AMJ96_CH02166 4b98a14ef7e67c075a07ec75794f1f14 170 Pfam PF00436 Single-strand binding protein family 5 105 7.7E-40 T 12-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 AMJ96_CH02166 4b98a14ef7e67c075a07ec75794f1f14 170 Hamap MF_00984 Single-stranded DNA-binding protein. 5 118 35.988 T 12-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AMJ96_CH01075 6e50958e6febb17537fdaeacfd99bbbe 91 Pfam PF14026 Protein of unknown function (DUF4242) 4 82 1.6E-19 T 12-10-2018 IPR025336 Protein of unknown function DUF4242 AMJ96_PA00031 5a732726c49059880ea13f10dfe06dec 336 SUPERFAMILY SSF53850 26 333 1.28E-65 T 12-10-2018 AMJ96_PA00031 5a732726c49059880ea13f10dfe06dec 336 Gene3D G3DSA:3.40.190.10 124 245 1.0E-134 T 12-10-2018 AMJ96_PA00031 5a732726c49059880ea13f10dfe06dec 336 Pfam PF13416 Bacterial extracellular solute-binding protein 42 299 2.9E-41 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PA00031 5a732726c49059880ea13f10dfe06dec 336 Gene3D G3DSA:3.40.190.10 29 333 1.0E-134 T 12-10-2018 AMJ96_CH01236 0ba73c160bce58f782bc3b7897953bfa 539 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 36 525 2.5E-120 T 12-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 AMJ96_CH01236 0ba73c160bce58f782bc3b7897953bfa 539 Gene3D G3DSA:1.20.1720.10 36 240 2.0E-34 T 12-10-2018 AMJ96_CH01236 0ba73c160bce58f782bc3b7897953bfa 539 Pfam PF07690 Major Facilitator Superfamily 41 433 3.3E-44 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH01236 0ba73c160bce58f782bc3b7897953bfa 539 SUPERFAMILY SSF103473 21 529 2.49E-63 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH02044 ca6b25652bfe4c51a179c4a202225791 454 Pfam PF00072 Response regulator receiver domain 5 114 6.3E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02044 ca6b25652bfe4c51a179c4a202225791 454 Gene3D G3DSA:1.10.10.60 399 454 6.5E-14 T 12-10-2018 AMJ96_CH02044 ca6b25652bfe4c51a179c4a202225791 454 SUPERFAMILY SSF46689 352 454 2.73E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02044 ca6b25652bfe4c51a179c4a202225791 454 SUPERFAMILY SSF52540 141 373 1.63E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02044 ca6b25652bfe4c51a179c4a202225791 454 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 435 454 3.4E-5 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMJ96_CH02044 ca6b25652bfe4c51a179c4a202225791 454 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 418 435 3.4E-5 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMJ96_CH02044 ca6b25652bfe4c51a179c4a202225791 454 Gene3D G3DSA:3.40.50.2300 4 124 9.1E-35 T 12-10-2018 AMJ96_CH02044 ca6b25652bfe4c51a179c4a202225791 454 Gene3D G3DSA:3.40.50.300 129 310 9.3E-50 T 12-10-2018 AMJ96_CH02044 ca6b25652bfe4c51a179c4a202225791 454 Pfam PF02954 Bacterial regulatory protein, Fis family 412 450 2.7E-11 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMJ96_CH02044 ca6b25652bfe4c51a179c4a202225791 454 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 352 361 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AMJ96_CH02044 ca6b25652bfe4c51a179c4a202225791 454 SUPERFAMILY SSF52172 4 186 1.85E-40 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH02044 ca6b25652bfe4c51a179c4a202225791 454 SMART SM00448 3 116 4.1E-30 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02044 ca6b25652bfe4c51a179c4a202225791 454 Pfam PF00158 Sigma-54 interaction domain 142 305 4.4E-50 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMJ96_CH02044 ca6b25652bfe4c51a179c4a202225791 454 Gene3D G3DSA:1.10.8.60 311 387 3.8E-20 T 12-10-2018 AMJ96_CH02044 ca6b25652bfe4c51a179c4a202225791 454 SMART SM00382 162 302 2.6E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00275 8696a73045e51fd677e5d347832b272a 686 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 4 680 0.0 T 12-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 AMJ96_PC00275 8696a73045e51fd677e5d347832b272a 686 SUPERFAMILY SSF81665 46 588 2.35E-9 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 AMJ96_PC00275 8696a73045e51fd677e5d347832b272a 686 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 371 605 1.0E-43 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMJ96_PC00275 8696a73045e51fd677e5d347832b272a 686 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 72 336 6.2E-33 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMJ96_PC00275 8696a73045e51fd677e5d347832b272a 686 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 467 477 4.7E-22 T 12-10-2018 AMJ96_PC00275 8696a73045e51fd677e5d347832b272a 686 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 520 539 4.7E-22 T 12-10-2018 AMJ96_PC00275 8696a73045e51fd677e5d347832b272a 686 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 153 167 4.7E-22 T 12-10-2018 AMJ96_PC00275 8696a73045e51fd677e5d347832b272a 686 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 304 318 4.7E-22 T 12-10-2018 AMJ96_PC00275 8696a73045e51fd677e5d347832b272a 686 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 543 555 4.7E-22 T 12-10-2018 AMJ96_PC00275 8696a73045e51fd677e5d347832b272a 686 Gene3D G3DSA:3.40.1110.10 315 450 3.2E-54 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AMJ96_PC00275 8696a73045e51fd677e5d347832b272a 686 SUPERFAMILY SSF81653 114 206 2.48E-22 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 AMJ96_PC00275 8696a73045e51fd677e5d347832b272a 686 SUPERFAMILY SSF56784 292 563 7.71E-36 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_PC00275 8696a73045e51fd677e5d347832b272a 686 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 9 684 42.175 T 12-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 AMJ96_PC00275 8696a73045e51fd677e5d347832b272a 686 SUPERFAMILY SSF81660 315 454 5.56E-32 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AMJ96_PC00275 8696a73045e51fd677e5d347832b272a 686 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 306 312 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AMJ96_PC00275 8696a73045e51fd677e5d347832b272a 686 ProSitePatterns PS01229 Hypothetical cof family signature 2. 520 542 - T 12-10-2018 AMJ96_PC00275 8696a73045e51fd677e5d347832b272a 686 Pfam PF00702 haloacid dehalogenase-like hydrolase 300 534 3.5E-31 T 12-10-2018 AMJ96_PC00275 8696a73045e51fd677e5d347832b272a 686 Pfam PF00122 E1-E2 ATPase 103 283 2.5E-34 T 12-10-2018 AMJ96_PC00275 8696a73045e51fd677e5d347832b272a 686 Gene3D G3DSA:2.70.150.20 102 211 2.3E-26 T 12-10-2018 AMJ96_PC00275 8696a73045e51fd677e5d347832b272a 686 Gene3D G3DSA:3.40.50.1000 451 571 8.2E-23 T 12-10-2018 IPR023214 HAD superfamily AMJ96_CH02885 d9569bedb4c72fce21101cb87d9d4cef 369 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 57 359 1.1E-5 T 12-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase AMJ96_CH02885 d9569bedb4c72fce21101cb87d9d4cef 369 Gene3D G3DSA:3.60.10.10 2 367 5.3E-23 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMJ96_CH02885 d9569bedb4c72fce21101cb87d9d4cef 369 SUPERFAMILY SSF56219 1 369 4.58E-29 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMJ96_CH03720 a7f458864dece86e6dee59d78b997407 346 PRINTS PR00819 CbxX/CfqX superfamily signature 168 187 5.8E-7 T 12-10-2018 IPR000641 CbxX/CfqX GO:0005524 AMJ96_CH03720 a7f458864dece86e6dee59d78b997407 346 PRINTS PR00819 CbxX/CfqX superfamily signature 221 233 5.8E-7 T 12-10-2018 IPR000641 CbxX/CfqX GO:0005524 AMJ96_CH03720 a7f458864dece86e6dee59d78b997407 346 PRINTS PR00819 CbxX/CfqX superfamily signature 55 70 5.8E-7 T 12-10-2018 IPR000641 CbxX/CfqX GO:0005524 AMJ96_CH03720 a7f458864dece86e6dee59d78b997407 346 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 12 235 1.7E-112 T 12-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 AMJ96_CH03720 a7f458864dece86e6dee59d78b997407 346 Gene3D G3DSA:1.10.8.60 183 257 8.6E-28 T 12-10-2018 AMJ96_CH03720 a7f458864dece86e6dee59d78b997407 346 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 252 334 5.0E-43 T 12-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 AMJ96_CH03720 a7f458864dece86e6dee59d78b997407 346 SUPERFAMILY SSF52540 21 254 1.0E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03720 a7f458864dece86e6dee59d78b997407 346 Gene3D G3DSA:1.10.10.10 258 336 9.9E-32 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03720 a7f458864dece86e6dee59d78b997407 346 SMART SM00382 52 179 2.0E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03720 a7f458864dece86e6dee59d78b997407 346 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 25 328 4.5E-135 T 12-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMJ96_CH03720 a7f458864dece86e6dee59d78b997407 346 SUPERFAMILY SSF46785 257 331 2.45E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03720 a7f458864dece86e6dee59d78b997407 346 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 254 327 4.4E-31 T 12-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 AMJ96_CH03720 a7f458864dece86e6dee59d78b997407 346 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 346 170.267 T 12-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMJ96_CH03720 a7f458864dece86e6dee59d78b997407 346 Gene3D G3DSA:3.40.50.300 19 182 7.7E-43 T 12-10-2018 AMJ96_CH01552 e33e307fc17a7aa0960625e17d6c259f 432 Pfam PF00464 Serine hydroxymethyltransferase 14 391 3.1E-180 T 12-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AMJ96_CH01552 e33e307fc17a7aa0960625e17d6c259f 432 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 13 429 53.074 T 12-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AMJ96_CH01552 e33e307fc17a7aa0960625e17d6c259f 432 SUPERFAMILY SSF53383 6 430 9.65E-185 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH01552 e33e307fc17a7aa0960625e17d6c259f 432 Gene3D G3DSA:3.90.1150.10 16 400 2.2E-183 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH01552 e33e307fc17a7aa0960625e17d6c259f 432 Gene3D G3DSA:3.40.640.10 43 294 2.2E-183 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH01552 e33e307fc17a7aa0960625e17d6c259f 432 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 228 244 - T 12-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AMJ96_CH01552 e33e307fc17a7aa0960625e17d6c259f 432 PIRSF PIRSF000412 2 432 1.0E-169 T 12-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AMJ96_CH00333 bd005445b717a4f80ff01875ebecf3b2 372 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 120 2.1E-33 T 12-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 AMJ96_CH00333 bd005445b717a4f80ff01875ebecf3b2 372 Gene3D G3DSA:3.10.150.10 1 248 3.3E-120 T 12-10-2018 AMJ96_CH00333 bd005445b717a4f80ff01875ebecf3b2 372 Gene3D G3DSA:3.70.10.10 139 370 3.3E-120 T 12-10-2018 AMJ96_CH00333 bd005445b717a4f80ff01875ebecf3b2 372 SUPERFAMILY SSF55979 1 119 2.79E-28 T 12-10-2018 AMJ96_CH00333 bd005445b717a4f80ff01875ebecf3b2 372 SUPERFAMILY SSF55979 251 372 1.11E-36 T 12-10-2018 AMJ96_CH00333 bd005445b717a4f80ff01875ebecf3b2 372 SUPERFAMILY SSF55979 127 250 2.0E-26 T 12-10-2018 AMJ96_CH00333 bd005445b717a4f80ff01875ebecf3b2 372 Pfam PF02767 DNA polymerase III beta subunit, central domain 131 249 1.9E-30 T 12-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 AMJ96_CH00333 bd005445b717a4f80ff01875ebecf3b2 372 PIRSF PIRSF000804 1 372 1.8E-120 T 12-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 AMJ96_CH00333 bd005445b717a4f80ff01875ebecf3b2 372 SMART SM00480 17 368 7.5E-115 T 12-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 AMJ96_CH00333 bd005445b717a4f80ff01875ebecf3b2 372 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 371 5.2E-93 T 12-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 AMJ96_CH00333 bd005445b717a4f80ff01875ebecf3b2 372 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 252 371 3.8E-32 T 12-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 AMJ96_CH04346 7163ca79645a7f5ccc62a7fed05edcdc 202 Pfam PF00694 Aconitase C-terminal domain 1 123 3.6E-38 T 12-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 AMJ96_CH04346 7163ca79645a7f5ccc62a7fed05edcdc 202 Gene3D G3DSA:3.20.19.10 1 175 8.6E-74 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 AMJ96_CH04346 7163ca79645a7f5ccc62a7fed05edcdc 202 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 187 1.7E-77 T 12-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 AMJ96_CH04346 7163ca79645a7f5ccc62a7fed05edcdc 202 SUPERFAMILY SSF52016 1 191 1.47E-58 T 12-10-2018 AMJ96_CH04346 7163ca79645a7f5ccc62a7fed05edcdc 202 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 201 42.357 T 12-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 AMJ96_CH00089 27b394b0711fe467d4115a50e4813370 291 SUPERFAMILY SSF56112 10 280 3.64E-42 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily AMJ96_CH00089 27b394b0711fe467d4115a50e4813370 291 Gene3D G3DSA:3.90.1200.10 89 290 1.8E-46 T 12-10-2018 AMJ96_CH00089 27b394b0711fe467d4115a50e4813370 291 Pfam PF01633 Choline/ethanolamine kinase 40 216 5.3E-23 T 12-10-2018 AMJ96_CH00089 27b394b0711fe467d4115a50e4813370 291 Gene3D G3DSA:3.30.200.20 3 88 2.8E-11 T 12-10-2018 AMJ96_CH00362 a68e2c006d18eb8d6aa23401ac2a86b9 109 Pfam PF04993 TfoX N-terminal domain 15 101 2.0E-9 T 12-10-2018 IPR007076 TfoX, N-terminal AMJ96_CH00362 a68e2c006d18eb8d6aa23401ac2a86b9 109 SUPERFAMILY SSF159894 8 102 4.18E-9 T 12-10-2018 AMJ96_CH01484 e7b4b3834a1508a77c703262725dfaa5 273 SMART SM00342 189 271 2.0E-32 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH01484 e7b4b3834a1508a77c703262725dfaa5 273 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 255 271 1.2E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_CH01484 e7b4b3834a1508a77c703262725dfaa5 273 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 240 255 1.2E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_CH01484 e7b4b3834a1508a77c703262725dfaa5 273 Pfam PF12833 Helix-turn-helix domain 195 272 7.0E-24 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH01484 e7b4b3834a1508a77c703262725dfaa5 273 SUPERFAMILY SSF51215 29 139 3.01E-20 T 12-10-2018 IPR037923 Transcription regulator HTH-like AMJ96_CH01484 e7b4b3834a1508a77c703262725dfaa5 273 Pfam PF02311 AraC-like ligand binding domain 19 146 2.1E-25 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMJ96_CH01484 e7b4b3834a1508a77c703262725dfaa5 273 SUPERFAMILY SSF46689 174 223 1.37E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH01484 e7b4b3834a1508a77c703262725dfaa5 273 Gene3D G3DSA:2.60.120.10 8 95 2.4E-6 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH01484 e7b4b3834a1508a77c703262725dfaa5 273 Gene3D G3DSA:1.10.10.60 232 273 4.1E-15 T 12-10-2018 AMJ96_CH01484 e7b4b3834a1508a77c703262725dfaa5 273 Gene3D G3DSA:1.10.10.60 169 231 7.4E-14 T 12-10-2018 AMJ96_CH01484 e7b4b3834a1508a77c703262725dfaa5 273 SUPERFAMILY SSF46689 225 272 2.91E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH00182 ddf20bca1a905d31feb312c1e87ac741 610 PIRSF PIRSF002741 3 609 2.8E-93 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_CH00182 ddf20bca1a905d31feb312c1e87ac741 610 SUPERFAMILY SSF53850 55 605 2.53E-118 T 12-10-2018 AMJ96_CH00182 ddf20bca1a905d31feb312c1e87ac741 610 Gene3D G3DSA:3.10.105.10 325 584 3.1E-226 T 12-10-2018 AMJ96_CH00182 ddf20bca1a905d31feb312c1e87ac741 610 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 106 522 3.1E-76 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_CH00182 ddf20bca1a905d31feb312c1e87ac741 610 Gene3D G3DSA:3.40.190.10 35 605 3.1E-226 T 12-10-2018 AMJ96_PB00018 5b8ce483ad9a4f98db46e88fbff990e5 197 SUPERFAMILY SSF52402 1 193 1.12E-38 T 12-10-2018 AMJ96_PB00018 5b8ce483ad9a4f98db46e88fbff990e5 197 Pfam PF06508 Queuosine biosynthesis protein QueC 3 191 7.6E-39 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AMJ96_PB00018 5b8ce483ad9a4f98db46e88fbff990e5 197 Gene3D G3DSA:3.40.50.620 1 197 2.1E-46 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_PB00018 5b8ce483ad9a4f98db46e88fbff990e5 197 PIRSF PIRSF006293 1 195 3.8E-39 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AMJ96_CH01401 b2ad36ae3a79694cfbeb68a3d70c82f6 288 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 75 250 1.9E-49 T 12-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 AMJ96_CH01401 b2ad36ae3a79694cfbeb68a3d70c82f6 288 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 79 248 6.9E-57 T 12-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 AMJ96_CH02042 c7576aa8f3371438f241ce5edfa7cf21 233 SUPERFAMILY SSF51621 5 219 3.38E-51 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMJ96_CH02042 c7576aa8f3371438f241ce5edfa7cf21 233 Gene3D G3DSA:3.20.20.60 119 232 1.4E-24 T 12-10-2018 AMJ96_CH02042 c7576aa8f3371438f241ce5edfa7cf21 233 Gene3D G3DSA:3.20.20.60 1 118 7.2E-29 T 12-10-2018 AMJ96_CH02042 c7576aa8f3371438f241ce5edfa7cf21 233 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 18 194 6.4E-29 T 12-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 AMJ96_PC00074 a59365dc966eb3c111b940ebdee56257 213 SUPERFAMILY SSF53474 7 155 8.91E-24 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PC00074 a59365dc966eb3c111b940ebdee56257 213 Gene3D G3DSA:3.40.50.1820 12 200 3.6E-26 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PA00023 8d8c445f2b5998ce6a34f173d17d0e66 231 Pfam PF07729 FCD domain 91 214 3.2E-22 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PA00023 8d8c445f2b5998ce6a34f173d17d0e66 231 Gene3D G3DSA:1.20.120.530 84 221 3.9E-22 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PA00023 8d8c445f2b5998ce6a34f173d17d0e66 231 SUPERFAMILY SSF48008 87 217 3.4E-19 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PA00023 8d8c445f2b5998ce6a34f173d17d0e66 231 SUPERFAMILY SSF46785 17 107 2.72E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PA00023 8d8c445f2b5998ce6a34f173d17d0e66 231 Gene3D G3DSA:1.10.10.10 7 82 1.9E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PA00023 8d8c445f2b5998ce6a34f173d17d0e66 231 Pfam PF00392 Bacterial regulatory proteins, gntR family 24 78 1.7E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PA00023 8d8c445f2b5998ce6a34f173d17d0e66 231 SMART SM00345 23 81 9.0E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PA00023 8d8c445f2b5998ce6a34f173d17d0e66 231 SMART SM00895 91 215 4.1E-18 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PA00023 8d8c445f2b5998ce6a34f173d17d0e66 231 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 1.5E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PA00023 8d8c445f2b5998ce6a34f173d17d0e66 231 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 1.5E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00577 731c089cbac3641e57fdab6505aa9af1 208 ProSitePatterns PS00622 LuxR-type HTH domain signature. 155 182 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00577 731c089cbac3641e57fdab6505aa9af1 208 SMART SM00448 3 114 9.5E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00577 731c089cbac3641e57fdab6505aa9af1 208 Pfam PF00196 Bacterial regulatory proteins, luxR family 139 195 1.4E-22 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00577 731c089cbac3641e57fdab6505aa9af1 208 SMART SM00421 138 195 4.7E-22 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00577 731c089cbac3641e57fdab6505aa9af1 208 Pfam PF00072 Response regulator receiver domain 5 113 3.3E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00577 731c089cbac3641e57fdab6505aa9af1 208 Gene3D G3DSA:3.40.50.2300 1 128 1.5E-41 T 12-10-2018 AMJ96_PD00577 731c089cbac3641e57fdab6505aa9af1 208 Gene3D G3DSA:1.10.10.10 131 196 9.9E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00577 731c089cbac3641e57fdab6505aa9af1 208 SUPERFAMILY SSF52172 5 160 1.2E-31 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PD00577 731c089cbac3641e57fdab6505aa9af1 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 171 183 1.2E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00577 731c089cbac3641e57fdab6505aa9af1 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 171 1.2E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00577 731c089cbac3641e57fdab6505aa9af1 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 141 155 1.2E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PA00258 6b5df742049c62e4f0c26c2236a70360 235 SMART SM00796 22 220 1.1E-78 T 12-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D AMJ96_PA00258 6b5df742049c62e4f0c26c2236a70360 235 SUPERFAMILY SSF160467 23 110 4.45E-12 T 12-10-2018 AMJ96_PA00258 6b5df742049c62e4f0c26c2236a70360 235 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 23 218 1.8E-54 T 12-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D AMJ96_PA00258 6b5df742049c62e4f0c26c2236a70360 235 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 27 229 5.1E-50 T 12-10-2018 IPR010016 KipI family KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 AMJ96_PA00258 6b5df742049c62e4f0c26c2236a70360 235 Gene3D G3DSA:2.40.100.10 105 234 2.2E-39 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily AMJ96_PA00258 6b5df742049c62e4f0c26c2236a70360 235 SUPERFAMILY SSF50891 106 232 2.54E-35 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily AMJ96_CH01435 23c1491b4616b15c0af19f01ea4e427d 313 Gene3D G3DSA:3.30.300.20 199 311 3.1E-38 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta AMJ96_CH01435 23c1491b4616b15c0af19f01ea4e427d 313 Hamap MF_00367 GTPase Era [era]. 19 309 34.118 T 12-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01435 23c1491b4616b15c0af19f01ea4e427d 313 Pfam PF07650 KH domain 221 297 4.1E-19 T 12-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01435 23c1491b4616b15c0af19f01ea4e427d 313 TIGRFAM TIGR00436 era: GTP-binding protein Era 22 292 6.9E-76 T 12-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01435 23c1491b4616b15c0af19f01ea4e427d 313 SUPERFAMILY SSF52540 24 217 7.81E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01435 23c1491b4616b15c0af19f01ea4e427d 313 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 23 181 5.7E-26 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMJ96_CH01435 23c1491b4616b15c0af19f01ea4e427d 313 Gene3D G3DSA:3.40.50.300 18 198 3.2E-45 T 12-10-2018 AMJ96_CH01435 23c1491b4616b15c0af19f01ea4e427d 313 SUPERFAMILY SSF54814 194 310 9.81E-41 T 12-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 AMJ96_CH01435 23c1491b4616b15c0af19f01ea4e427d 313 Pfam PF01926 50S ribosome-binding GTPase 24 138 7.7E-24 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 AMJ96_CH02971 8cdcf0ae951be72f443f06018f97a02b 470 Gene3D G3DSA:3.30.70.2740 346 427 2.4E-10 T 12-10-2018 AMJ96_CH02971 8cdcf0ae951be72f443f06018f97a02b 470 SUPERFAMILY SSF55103 232 468 2.62E-71 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMJ96_CH02971 8cdcf0ae951be72f443f06018f97a02b 470 SUPERFAMILY SSF56176 20 227 2.8E-62 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMJ96_CH02971 8cdcf0ae951be72f443f06018f97a02b 470 Gene3D G3DSA:1.10.45.10 428 467 2.9E-11 T 12-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AMJ96_CH02971 8cdcf0ae951be72f443f06018f97a02b 470 Gene3D G3DSA:3.30.465.40 26 241 5.6E-67 T 12-10-2018 AMJ96_CH02971 8cdcf0ae951be72f443f06018f97a02b 470 Pfam PF02913 FAD linked oxidases, C-terminal domain 226 466 1.1E-67 T 12-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AMJ96_CH02971 8cdcf0ae951be72f443f06018f97a02b 470 Pfam PF01565 FAD binding domain 53 189 1.1E-35 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMJ96_PC00049 3377a427fe696a2055c8e3ec0353fa27 151 Gene3D G3DSA:1.10.10.10 1 147 6.7E-42 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00049 3377a427fe696a2055c8e3ec0353fa27 151 SUPERFAMILY SSF46785 4 135 2.93E-31 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00049 3377a427fe696a2055c8e3ec0353fa27 151 Pfam PF02082 Transcriptional regulator 1 81 1.6E-23 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type AMJ96_CH02953 ee5be479d54c55f0b9542c2215f59c37 596 Gene3D G3DSA:3.40.50.1220 197 370 1.5E-57 T 12-10-2018 AMJ96_CH02953 ee5be479d54c55f0b9542c2215f59c37 596 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 12 176 1.4E-58 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMJ96_CH02953 ee5be479d54c55f0b9542c2215f59c37 596 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 405 552 5.8E-49 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMJ96_CH02953 ee5be479d54c55f0b9542c2215f59c37 596 Gene3D G3DSA:3.40.50.970 371 594 7.5E-66 T 12-10-2018 AMJ96_CH02953 ee5be479d54c55f0b9542c2215f59c37 596 SUPERFAMILY SSF52518 382 582 3.5E-66 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_CH02953 ee5be479d54c55f0b9542c2215f59c37 596 SUPERFAMILY SSF52467 196 370 2.76E-62 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMJ96_CH02953 ee5be479d54c55f0b9542c2215f59c37 596 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 12 575 7.4E-239 T 12-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AMJ96_CH02953 ee5be479d54c55f0b9542c2215f59c37 596 SUPERFAMILY SSF52518 8 187 7.07E-66 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_CH02953 ee5be479d54c55f0b9542c2215f59c37 596 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 204 339 1.1E-40 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMJ96_CH02953 ee5be479d54c55f0b9542c2215f59c37 596 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 441 460 - T 12-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AMJ96_CH02953 ee5be479d54c55f0b9542c2215f59c37 596 Gene3D G3DSA:3.40.50.970 3 185 5.4E-72 T 12-10-2018 AMJ96_CH01281 e16ab8e11e4d3cf1f61c0fa327ae86cc 542 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 528 3.5E-264 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_CH01281 e16ab8e11e4d3cf1f61c0fa327ae86cc 542 Gene3D G3DSA:1.10.560.10 8 522 2.6E-244 T 12-10-2018 IPR027413 GroEL-like equatorial domain superfamily AMJ96_CH01281 e16ab8e11e4d3cf1f61c0fa327ae86cc 542 PRINTS PR00298 60kDa chaperonin signature 398 419 1.5E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_CH01281 e16ab8e11e4d3cf1f61c0fa327ae86cc 542 PRINTS PR00298 60kDa chaperonin signature 27 53 1.5E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_CH01281 e16ab8e11e4d3cf1f61c0fa327ae86cc 542 PRINTS PR00298 60kDa chaperonin signature 350 375 1.5E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_CH01281 e16ab8e11e4d3cf1f61c0fa327ae86cc 542 PRINTS PR00298 60kDa chaperonin signature 83 110 1.5E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_CH01281 e16ab8e11e4d3cf1f61c0fa327ae86cc 542 PRINTS PR00298 60kDa chaperonin signature 268 291 1.5E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_CH01281 e16ab8e11e4d3cf1f61c0fa327ae86cc 542 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 525 1.2E-103 T 12-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 AMJ96_CH01281 e16ab8e11e4d3cf1f61c0fa327ae86cc 542 SUPERFAMILY SSF52029 184 376 2.88E-87 T 12-10-2018 IPR027409 GroEL-like apical domain superfamily AMJ96_CH01281 e16ab8e11e4d3cf1f61c0fa327ae86cc 542 Gene3D G3DSA:3.30.260.10 138 410 2.6E-244 T 12-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily AMJ96_CH01281 e16ab8e11e4d3cf1f61c0fa327ae86cc 542 Hamap MF_00600 60 kDa chaperonin [groL]. 2 540 42.468 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_CH01281 e16ab8e11e4d3cf1f61c0fa327ae86cc 542 SUPERFAMILY SSF54849 138 196 7.1E-22 T 12-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily AMJ96_CH01281 e16ab8e11e4d3cf1f61c0fa327ae86cc 542 Gene3D G3DSA:3.50.7.10 173 379 2.6E-244 T 12-10-2018 IPR027409 GroEL-like apical domain superfamily AMJ96_CH01281 e16ab8e11e4d3cf1f61c0fa327ae86cc 542 SUPERFAMILY SSF48592 7 522 1.15E-79 T 12-10-2018 IPR027413 GroEL-like equatorial domain superfamily AMJ96_CH01281 e16ab8e11e4d3cf1f61c0fa327ae86cc 542 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 12-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_PD00138 ba7a51481b0897ee10ba6f9b8496e330 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 277 4.0E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00138 ba7a51481b0897ee10ba6f9b8496e330 288 SUPERFAMILY SSF161098 51 275 2.22E-49 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00138 ba7a51481b0897ee10ba6f9b8496e330 288 Gene3D G3DSA:1.10.3720.10 46 285 3.4E-52 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00133 5cc4ef685ea31d67c6e713ebccd9bf08 319 Gene3D G3DSA:3.90.79.20 26 178 4.4E-12 T 12-10-2018 AMJ96_CH00133 5cc4ef685ea31d67c6e713ebccd9bf08 319 Pfam PF00293 NUDIX domain 182 293 9.9E-17 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMJ96_CH00133 5cc4ef685ea31d67c6e713ebccd9bf08 319 ProSitePatterns PS00893 Nudix box signature. 214 235 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMJ96_CH00133 5cc4ef685ea31d67c6e713ebccd9bf08 319 Pfam PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain 47 144 5.8E-8 T 12-10-2018 IPR015375 NADH pyrophosphatase-like, N-terminal GO:0016787 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 AMJ96_CH00133 5cc4ef685ea31d67c6e713ebccd9bf08 319 Gene3D G3DSA:3.90.79.10 180 318 2.0E-36 T 12-10-2018 AMJ96_CH00133 5cc4ef685ea31d67c6e713ebccd9bf08 319 SUPERFAMILY SSF55811 134 315 1.22E-42 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_CH00133 5cc4ef685ea31d67c6e713ebccd9bf08 319 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 147 177 3.1E-12 T 12-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 AMJ96_CH01179 f43b0d26d8dbf7fad3e43bda130df25f 605 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 422 521 1.3E-10 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01179 f43b0d26d8dbf7fad3e43bda130df25f 605 SUPERFAMILY SSF54631 294 428 1.89E-9 T 12-10-2018 AMJ96_CH01179 f43b0d26d8dbf7fad3e43bda130df25f 605 Pfam PF00563 EAL domain 33 254 2.8E-51 T 12-10-2018 IPR001633 EAL domain AMJ96_CH01179 f43b0d26d8dbf7fad3e43bda130df25f 605 SMART SM00052 20 262 2.1E-28 T 12-10-2018 IPR001633 EAL domain AMJ96_CH01179 f43b0d26d8dbf7fad3e43bda130df25f 605 Pfam PF00571 CBS domain 294 340 7.7E-5 T 12-10-2018 IPR000644 CBS domain AMJ96_CH01179 f43b0d26d8dbf7fad3e43bda130df25f 605 Gene3D G3DSA:3.10.580.10 283 415 4.2E-8 T 12-10-2018 AMJ96_CH01179 f43b0d26d8dbf7fad3e43bda130df25f 605 SUPERFAMILY SSF141868 34 256 1.1E-57 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH01179 f43b0d26d8dbf7fad3e43bda130df25f 605 Gene3D G3DSA:3.20.20.450 15 265 8.5E-60 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH01179 f43b0d26d8dbf7fad3e43bda130df25f 605 Pfam PF00990 Diguanylate cyclase, GGDEF domain 424 526 2.3E-11 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01179 f43b0d26d8dbf7fad3e43bda130df25f 605 SMART SM00267 407 583 1.9E-5 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01179 f43b0d26d8dbf7fad3e43bda130df25f 605 SUPERFAMILY SSF55073 425 567 9.42E-18 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH01179 f43b0d26d8dbf7fad3e43bda130df25f 605 Gene3D G3DSA:3.30.70.270 416 592 3.7E-20 T 12-10-2018 AMJ96_PC00042 ac0e35be4f787d02b470ed09a8f6422c 635 Gene3D G3DSA:3.40.190.10 65 338 1.3E-33 T 12-10-2018 AMJ96_PC00042 ac0e35be4f787d02b470ed09a8f6422c 635 Gene3D G3DSA:3.10.105.10 345 594 9.5E-38 T 12-10-2018 AMJ96_PC00042 ac0e35be4f787d02b470ed09a8f6422c 635 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 101 510 7.6E-62 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_PC00042 ac0e35be4f787d02b470ed09a8f6422c 635 SUPERFAMILY SSF53850 78 619 4.89E-79 T 12-10-2018 AMJ96_CH00902 d7a21b5347b50c5f27729d646c2e66ac 318 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 87 107 2.5E-54 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMJ96_CH00902 d7a21b5347b50c5f27729d646c2e66ac 318 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 118 142 2.5E-54 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMJ96_CH00902 d7a21b5347b50c5f27729d646c2e66ac 318 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 144 164 2.5E-54 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMJ96_CH00902 d7a21b5347b50c5f27729d646c2e66ac 318 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 167 182 2.5E-54 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMJ96_CH00902 d7a21b5347b50c5f27729d646c2e66ac 318 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 66 81 2.5E-54 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMJ96_CH00902 d7a21b5347b50c5f27729d646c2e66ac 318 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 12 309 58.053 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMJ96_CH00902 d7a21b5347b50c5f27729d646c2e66ac 318 Gene3D G3DSA:1.20.58.180 221 308 1.9E-31 T 12-10-2018 AMJ96_CH00902 d7a21b5347b50c5f27729d646c2e66ac 318 Gene3D G3DSA:3.30.930.10 6 220 2.1E-106 T 12-10-2018 AMJ96_CH00902 d7a21b5347b50c5f27729d646c2e66ac 318 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 14 304 3.6E-143 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMJ96_CH00902 d7a21b5347b50c5f27729d646c2e66ac 318 SUPERFAMILY SSF55681 13 305 4.47E-126 T 12-10-2018 AMJ96_CH00902 d7a21b5347b50c5f27729d646c2e66ac 318 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 13 304 9.8E-137 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AMJ96_CH02590 297cccad8cacbdb7475e27dcf74117bb 335 Gene3D G3DSA:3.40.50.300 3 224 2.9E-63 T 12-10-2018 AMJ96_CH02590 297cccad8cacbdb7475e27dcf74117bb 335 Gene3D G3DSA:2.40.50.100 251 323 8.0E-6 T 12-10-2018 AMJ96_CH02590 297cccad8cacbdb7475e27dcf74117bb 335 SUPERFAMILY SSF50331 239 334 1.06E-11 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH02590 297cccad8cacbdb7475e27dcf74117bb 335 Gene3D G3DSA:2.40.50.140 276 320 8.0E-6 T 12-10-2018 AMJ96_CH02590 297cccad8cacbdb7475e27dcf74117bb 335 Pfam PF00005 ABC transporter 19 163 3.3E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02590 297cccad8cacbdb7475e27dcf74117bb 335 SMART SM00382 28 221 3.1E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02590 297cccad8cacbdb7475e27dcf74117bb 335 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02590 297cccad8cacbdb7475e27dcf74117bb 335 SUPERFAMILY SSF52540 4 243 8.52E-79 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03547 72e20d4ae27f634371b88620a2913b7f 92 Pfam PF14542 GCN5-related N-acetyl-transferase 13 90 2.0E-24 T 12-10-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase AMJ96_CH03547 72e20d4ae27f634371b88620a2913b7f 92 Gene3D G3DSA:3.40.630.30 6 92 1.0E-24 T 12-10-2018 AMJ96_CH03547 72e20d4ae27f634371b88620a2913b7f 92 SUPERFAMILY SSF55729 6 91 1.08E-26 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_PD00275 160532bd2ce5869ec635ffcd64727c95 279 Gene3D G3DSA:3.40.190.10 29 248 9.3E-58 T 12-10-2018 AMJ96_PD00275 160532bd2ce5869ec635ffcd64727c95 279 Gene3D G3DSA:3.40.190.10 127 221 9.3E-58 T 12-10-2018 AMJ96_PD00275 160532bd2ce5869ec635ffcd64727c95 279 SMART SM00062 37 266 1.5E-46 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PD00275 160532bd2ce5869ec635ffcd64727c95 279 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 60 73 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site AMJ96_PD00275 160532bd2ce5869ec635ffcd64727c95 279 SUPERFAMILY SSF53850 10 266 1.52E-52 T 12-10-2018 AMJ96_PD00275 160532bd2ce5869ec635ffcd64727c95 279 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 264 7.8E-44 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PC00400 aa0c82a2bb0da314665cdfbf2b1b65aa 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_PC00400 aa0c82a2bb0da314665cdfbf2b1b65aa 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 242 9.5E-55 T 12-10-2018 AMJ96_PC00400 aa0c82a2bb0da314665cdfbf2b1b65aa 258 Gene3D G3DSA:3.40.50.720 1 257 3.2E-68 T 12-10-2018 AMJ96_PC00400 aa0c82a2bb0da314665cdfbf2b1b65aa 258 SUPERFAMILY SSF51735 6 243 5.35E-65 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00400 aa0c82a2bb0da314665cdfbf2b1b65aa 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 3.7E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00400 aa0c82a2bb0da314665cdfbf2b1b65aa 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 3.7E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00400 aa0c82a2bb0da314665cdfbf2b1b65aa 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 3.7E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00400 aa0c82a2bb0da314665cdfbf2b1b65aa 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 3.7E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00400 aa0c82a2bb0da314665cdfbf2b1b65aa 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 3.7E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00400 aa0c82a2bb0da314665cdfbf2b1b65aa 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 3.7E-37 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00400 aa0c82a2bb0da314665cdfbf2b1b65aa 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 6.6E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00400 aa0c82a2bb0da314665cdfbf2b1b65aa 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 6.6E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00400 aa0c82a2bb0da314665cdfbf2b1b65aa 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 6.6E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00370 622e07d2191d41c76fb2158cdac5a319 392 PRINTS PR00799 Aspartate aminotransferase signature 204 216 7.1E-28 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AMJ96_PD00370 622e07d2191d41c76fb2158cdac5a319 392 PRINTS PR00799 Aspartate aminotransferase signature 173 192 7.1E-28 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AMJ96_PD00370 622e07d2191d41c76fb2158cdac5a319 392 PRINTS PR00799 Aspartate aminotransferase signature 271 296 7.1E-28 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AMJ96_PD00370 622e07d2191d41c76fb2158cdac5a319 392 PRINTS PR00799 Aspartate aminotransferase signature 333 351 7.1E-28 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AMJ96_PD00370 622e07d2191d41c76fb2158cdac5a319 392 Gene3D G3DSA:3.90.1150.10 6 384 4.6E-131 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_PD00370 622e07d2191d41c76fb2158cdac5a319 392 Gene3D G3DSA:3.40.640.10 60 298 4.6E-131 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_PD00370 622e07d2191d41c76fb2158cdac5a319 392 Pfam PF00155 Aminotransferase class I and II 27 383 5.4E-61 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_PD00370 622e07d2191d41c76fb2158cdac5a319 392 SUPERFAMILY SSF53383 2 372 3.02E-89 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH02398 d2e83d18bb0d7dc3c4f1429136f9d34e 172 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 11 138 2.0E-36 T 12-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMJ96_CH02398 d2e83d18bb0d7dc3c4f1429136f9d34e 172 Gene3D G3DSA:3.30.70.560 4 156 2.3E-51 T 12-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMJ96_CH02398 d2e83d18bb0d7dc3c4f1429136f9d34e 172 SUPERFAMILY SSF55083 9 158 4.71E-51 T 12-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMJ96_CH02398 d2e83d18bb0d7dc3c4f1429136f9d34e 172 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 93 104 - T 12-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMJ96_CH02398 d2e83d18bb0d7dc3c4f1429136f9d34e 172 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 10 138 2.4E-43 T 12-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AMJ96_CH00394 815d2179ef2082251cbaaa045820139b 469 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 177 197 - T 12-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 AMJ96_CH00394 815d2179ef2082251cbaaa045820139b 469 SUPERFAMILY SSF102114 161 398 2.35E-61 T 12-10-2018 AMJ96_CH00394 815d2179ef2082251cbaaa045820139b 469 Pfam PF00919 Uncharacterized protein family UPF0004 23 126 4.4E-32 T 12-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 AMJ96_CH00394 815d2179ef2082251cbaaa045820139b 469 Gene3D G3DSA:3.40.50.12160 22 160 1.5E-36 T 12-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily AMJ96_CH00394 815d2179ef2082251cbaaa045820139b 469 SMART SM00729 173 393 6.9E-61 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMJ96_CH00394 815d2179ef2082251cbaaa045820139b 469 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 23 463 1.7E-149 T 12-10-2018 AMJ96_CH00394 815d2179ef2082251cbaaa045820139b 469 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 23 461 4.2E-148 T 12-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 AMJ96_CH00394 815d2179ef2082251cbaaa045820139b 469 Pfam PF04055 Radical SAM superfamily 178 351 2.0E-31 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMJ96_CH00394 815d2179ef2082251cbaaa045820139b 469 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 22 466 72.901 T 12-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 AMJ96_CH00394 815d2179ef2082251cbaaa045820139b 469 Pfam PF01938 TRAM domain 405 463 3.7E-8 T 12-10-2018 IPR002792 TRAM domain AMJ96_CH00394 815d2179ef2082251cbaaa045820139b 469 Gene3D G3DSA:3.80.30.20 172 406 5.9E-86 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMJ96_PD00104 8cef1a25aa7494a4d915dabc43deba45 296 Gene3D G3DSA:3.20.20.70 3 296 4.2E-85 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_PD00104 8cef1a25aa7494a4d915dabc43deba45 296 Pfam PF00701 Dihydrodipicolinate synthetase family 8 284 1.1E-35 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PD00104 8cef1a25aa7494a4d915dabc43deba45 296 PRINTS PR00146 Dihydrodipicolinate synthase signature 136 153 2.6E-5 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PD00104 8cef1a25aa7494a4d915dabc43deba45 296 PRINTS PR00146 Dihydrodipicolinate synthase signature 39 60 2.6E-5 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PD00104 8cef1a25aa7494a4d915dabc43deba45 296 PIRSF PIRSF001365 1 296 5.5E-54 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PD00104 8cef1a25aa7494a4d915dabc43deba45 296 SUPERFAMILY SSF51569 8 288 1.15E-52 T 12-10-2018 AMJ96_PD00104 8cef1a25aa7494a4d915dabc43deba45 296 SMART SM01130 6 291 1.9E-40 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PC00186 1aa7e0b2d30ec48341dc87ee2480aa04 118 Pfam PF12840 Helix-turn-helix domain 12 69 5.5E-13 T 12-10-2018 AMJ96_PC00186 1aa7e0b2d30ec48341dc87ee2480aa04 118 Gene3D G3DSA:1.10.10.10 7 112 2.2E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00186 1aa7e0b2d30ec48341dc87ee2480aa04 118 SUPERFAMILY SSF46785 5 102 1.21E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00186 1aa7e0b2d30ec48341dc87ee2480aa04 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 13 28 8.9E-5 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_PC00186 1aa7e0b2d30ec48341dc87ee2480aa04 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 45 60 8.9E-5 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_PC00186 1aa7e0b2d30ec48341dc87ee2480aa04 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 75 8.9E-5 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_PC00186 1aa7e0b2d30ec48341dc87ee2480aa04 118 SMART SM00418 11 85 3.4E-4 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH03611 659450989e97b7ee37b91a46e344837f 772 SMART SM00564 203 234 1.1 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMJ96_CH03611 659450989e97b7ee37b91a46e344837f 772 SMART SM00564 691 724 3.6E-5 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMJ96_CH03611 659450989e97b7ee37b91a46e344837f 772 SMART SM00564 411 436 76.0 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMJ96_CH03611 659450989e97b7ee37b91a46e344837f 772 SMART SM00564 317 358 170.0 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMJ96_CH03611 659450989e97b7ee37b91a46e344837f 772 SMART SM00564 628 663 30.0 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AMJ96_CH03611 659450989e97b7ee37b91a46e344837f 772 SUPERFAMILY SSF50998 154 753 2.09E-135 T 12-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AMJ96_CH03611 659450989e97b7ee37b91a46e344837f 772 Pfam PF01011 PQQ enzyme repeat 208 237 4.7E-5 T 12-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMJ96_CH03611 659450989e97b7ee37b91a46e344837f 772 Pfam PF01011 PQQ enzyme repeat 416 446 3.5E-7 T 12-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMJ96_CH03611 659450989e97b7ee37b91a46e344837f 772 Pfam PF01011 PQQ enzyme repeat 700 734 2.1E-6 T 12-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMJ96_CH03611 659450989e97b7ee37b91a46e344837f 772 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 7 768 1.2E-278 T 12-10-2018 IPR017511 PQQ-dependent membrane bound dehydrogenase GO:0016021|GO:0016614|GO:0048038|GO:0055114 AMJ96_CH02836 5065b563492b8bd19940566b062da6c7 265 SUPERFAMILY SSF52833 52 153 1.62E-9 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH02836 5065b563492b8bd19940566b062da6c7 265 Pfam PF05988 Bacterial protein of unknown function (DUF899) 7 262 4.6E-87 T 12-10-2018 IPR010296 Protein of unknown function DUF899, thioredoxin-like AMJ96_CH02836 5065b563492b8bd19940566b062da6c7 265 Gene3D G3DSA:3.40.30.10 38 167 2.7E-5 T 12-10-2018 AMJ96_CH02355 7a26b3d11ca10431a4588778cb778241 274 Gene3D G3DSA:3.40.190.10 32 249 7.7E-51 T 12-10-2018 AMJ96_CH02355 7a26b3d11ca10431a4588778cb778241 274 SUPERFAMILY SSF53850 12 258 1.01E-54 T 12-10-2018 AMJ96_CH02355 7a26b3d11ca10431a4588778cb778241 274 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 40 256 7.4E-50 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH02355 7a26b3d11ca10431a4588778cb778241 274 SMART SM00062 39 258 6.2E-47 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH02355 7a26b3d11ca10431a4588778cb778241 274 Gene3D G3DSA:3.40.190.10 126 216 7.7E-51 T 12-10-2018 AMJ96_PD00679 40ff258f868248ae64ab896454dd28cc 788 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 180 380 1.4E-49 T 12-10-2018 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 AMJ96_PD00679 40ff258f868248ae64ab896454dd28cc 788 Gene3D G3DSA:3.40.50.300 576 754 9.5E-23 T 12-10-2018 AMJ96_PD00679 40ff258f868248ae64ab896454dd28cc 788 Gene3D G3DSA:3.40.50.300 409 510 6.7E-8 T 12-10-2018 AMJ96_PD00679 40ff258f868248ae64ab896454dd28cc 788 TIGRFAM TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family 12 784 1.8E-253 T 12-10-2018 IPR004346 CagE, TrbE, VirB component of type IV transporter system GO:0005524 AMJ96_PD00679 40ff258f868248ae64ab896454dd28cc 788 SUPERFAMILY SSF52540 392 714 1.02E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00679 40ff258f868248ae64ab896454dd28cc 788 SMART SM00382 431 699 0.0015 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00119 d2dfc3f2868b7e9214ef05f5f27c669b 655 Pfam PF13727 CoA-binding domain 58 234 1.1E-7 T 12-10-2018 AMJ96_PD00119 d2dfc3f2868b7e9214ef05f5f27c669b 655 Pfam PF02719 Polysaccharide biosynthesis protein 279 577 5.9E-126 T 12-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain AMJ96_PD00119 d2dfc3f2868b7e9214ef05f5f27c669b 655 SUPERFAMILY SSF51735 140 265 1.97E-17 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00119 d2dfc3f2868b7e9214ef05f5f27c669b 655 Gene3D G3DSA:3.40.50.720 139 260 1.2E-32 T 12-10-2018 AMJ96_PD00119 d2dfc3f2868b7e9214ef05f5f27c669b 655 SUPERFAMILY SSF51735 277 594 7.7E-53 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00119 d2dfc3f2868b7e9214ef05f5f27c669b 655 Gene3D G3DSA:3.40.50.720 274 619 1.6E-112 T 12-10-2018 AMJ96_PB00219 9f2ff028f25a25f4a0d34b69b358d9ef 408 Gene3D G3DSA:1.20.1250.20 16 398 7.2E-23 T 12-10-2018 AMJ96_PB00219 9f2ff028f25a25f4a0d34b69b358d9ef 408 Pfam PF07690 Major Facilitator Superfamily 19 352 3.2E-19 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_PB00219 9f2ff028f25a25f4a0d34b69b358d9ef 408 SUPERFAMILY SSF103473 17 399 1.7E-31 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 Pfam PF02559 CarD-like/TRCF domain 501 594 3.0E-23 T 12-10-2018 IPR003711 CarD-like/TRCF domain AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 SUPERFAMILY SSF52540 390 490 1.44E-20 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 SUPERFAMILY SSF52540 802 1010 3.97E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 28 1167 27.033 T 12-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 SMART SM01058 500 596 7.0E-42 T 12-10-2018 IPR003711 CarD-like/TRCF domain AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 SUPERFAMILY SSF52540 545 804 5.28E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 Pfam PF00271 Helicase conserved C-terminal domain 825 929 1.3E-16 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 Pfam PF00270 DEAD/DEAH box helicase 626 785 1.2E-15 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 SMART SM00982 1025 1125 6.1E-42 T 12-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 Gene3D G3DSA:3.40.50.11180 39 305 8.7E-85 T 12-10-2018 AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 Gene3D G3DSA:3.90.1150.50 1022 1167 5.1E-35 T 12-10-2018 IPR037235 TRCF-like, C-terminal domain AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 SUPERFAMILY SSF143517 1015 1165 8.11E-41 T 12-10-2018 IPR037235 TRCF-like, C-terminal domain AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 Gene3D G3DSA:3.30.2060.10 132 218 8.7E-85 T 12-10-2018 AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 SMART SM00490 846 930 3.8E-19 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 SUPERFAMILY SSF52540 16 355 3.98E-83 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 SMART SM00487 620 810 6.5E-31 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 SUPERFAMILY SSF141259 493 568 9.55E-19 T 12-10-2018 IPR036101 CarD-like/TRCF domain superfamily AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 Gene3D G3DSA:3.40.50.300 501 1010 1.1E-213 T 12-10-2018 AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 Gene3D G3DSA:3.40.50.300 562 801 1.1E-213 T 12-10-2018 AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 Gene3D G3DSA:2.30.30.840 504 561 1.1E-213 T 12-10-2018 AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 150 1098 0.0 T 12-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AMJ96_CH02154 4ce298fda709fd77cb9def9933918fae 1167 Pfam PF03461 TRCF domain 1029 1118 4.5E-25 T 12-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AMJ96_CH03177 b498d9ce58369ecb1a1cfa4b0e9a388b 272 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 8 262 3.7E-75 T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AMJ96_CH03177 b498d9ce58369ecb1a1cfa4b0e9a388b 272 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 5 268 19.347 T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AMJ96_CH03177 b498d9ce58369ecb1a1cfa4b0e9a388b 272 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 143 155 - T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AMJ96_CH03177 b498d9ce58369ecb1a1cfa4b0e9a388b 272 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 3 267 3.2E-71 T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 AMJ96_CH03677 f24a8c6333d8d1231adfc2cb8d4c234b 392 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 202 219 - T 12-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMJ96_CH03677 f24a8c6333d8d1231adfc2cb8d4c234b 392 TIGRFAM TIGR00016 ackA: acetate kinase 5 387 1.4E-91 T 12-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMJ96_CH03677 f24a8c6333d8d1231adfc2cb8d4c234b 392 Pfam PF00871 Acetokinase family 7 382 3.4E-89 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMJ96_CH03677 f24a8c6333d8d1231adfc2cb8d4c234b 392 SUPERFAMILY SSF53067 161 390 9.07E-69 T 12-10-2018 AMJ96_CH03677 f24a8c6333d8d1231adfc2cb8d4c234b 392 SUPERFAMILY SSF53067 6 195 1.04E-48 T 12-10-2018 AMJ96_CH03677 f24a8c6333d8d1231adfc2cb8d4c234b 392 Gene3D G3DSA:3.30.420.40 4 196 3.6E-46 T 12-10-2018 AMJ96_CH03677 f24a8c6333d8d1231adfc2cb8d4c234b 392 PRINTS PR00471 Acetate kinase family signature 202 223 2.1E-32 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMJ96_CH03677 f24a8c6333d8d1231adfc2cb8d4c234b 392 PRINTS PR00471 Acetate kinase family signature 175 188 2.1E-32 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMJ96_CH03677 f24a8c6333d8d1231adfc2cb8d4c234b 392 PRINTS PR00471 Acetate kinase family signature 296 309 2.1E-32 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMJ96_CH03677 f24a8c6333d8d1231adfc2cb8d4c234b 392 PRINTS PR00471 Acetate kinase family signature 318 334 2.1E-32 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMJ96_CH03677 f24a8c6333d8d1231adfc2cb8d4c234b 392 PRINTS PR00471 Acetate kinase family signature 7 18 2.1E-32 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMJ96_CH03677 f24a8c6333d8d1231adfc2cb8d4c234b 392 PRINTS PR00471 Acetate kinase family signature 370 382 2.1E-32 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMJ96_CH03677 f24a8c6333d8d1231adfc2cb8d4c234b 392 PIRSF PIRSF000722 3 392 3.5E-124 T 12-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMJ96_CH03677 f24a8c6333d8d1231adfc2cb8d4c234b 392 Gene3D G3DSA:3.30.420.40 197 392 8.7E-66 T 12-10-2018 AMJ96_CH03677 f24a8c6333d8d1231adfc2cb8d4c234b 392 Hamap MF_00020 Acetate kinase [ackA]. 1 392 132.752 T 12-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AMJ96_CH02612 b45fdacd5bbd17ef41df13f2bbb8e562 111 Pfam PF12844 Helix-turn-helix domain 7 61 5.4E-9 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH02612 b45fdacd5bbd17ef41df13f2bbb8e562 111 Gene3D G3DSA:1.10.260.40 4 73 3.3E-11 T 12-10-2018 AMJ96_CH02612 b45fdacd5bbd17ef41df13f2bbb8e562 111 SUPERFAMILY SSF47413 6 47 3.94E-9 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH02612 b45fdacd5bbd17ef41df13f2bbb8e562 111 SMART SM00530 8 62 4.3E-4 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH03055 885d48ab9e9c53ac5d1ab645d50a7827 384 Pfam PF00465 Iron-containing alcohol dehydrogenase 13 374 4.9E-111 T 12-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AMJ96_CH03055 885d48ab9e9c53ac5d1ab645d50a7827 384 Gene3D G3DSA:1.20.1090.10 195 384 3.2E-57 T 12-10-2018 AMJ96_CH03055 885d48ab9e9c53ac5d1ab645d50a7827 384 Gene3D G3DSA:3.40.50.1970 2 193 6.1E-52 T 12-10-2018 AMJ96_CH03055 885d48ab9e9c53ac5d1ab645d50a7827 384 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 182 210 - T 12-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AMJ96_CH03055 885d48ab9e9c53ac5d1ab645d50a7827 384 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 268 288 - T 12-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AMJ96_CH03055 885d48ab9e9c53ac5d1ab645d50a7827 384 SUPERFAMILY SSF56796 9 383 8.11E-123 T 12-10-2018 AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 SUPERFAMILY SSF56112 61 284 5.8E-42 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 SUPERFAMILY SSF47384 1737 1811 2.35E-7 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 SUPERFAMILY SSF52540 311 599 4.53E-17 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 Pfam PF00069 Protein kinase domain 62 281 1.5E-26 T 12-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 Gene3D G3DSA:1.10.287.130 1721 1808 6.9E-13 T 12-10-2018 AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 SMART SM00220 28 291 3.1E-12 T 12-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 Pfam PF13426 PAS domain 1498 1577 1.0E-8 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 Pfam PF13426 PAS domain 1622 1721 5.8E-14 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 1483 1606 1.4E-14 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 1608 1728 1.2E-22 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 Pfam PF00512 His Kinase A (phospho-acceptor) domain 1745 1811 1.4E-6 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 SMART SM00065 1330 1482 2.4E-10 T 12-10-2018 IPR003018 GAF domain GO:0005515 AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 SMART SM00388 1744 1814 3.0E-7 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 SUPERFAMILY SSF55874 1801 1965 6.02E-31 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 Gene3D G3DSA:1.10.510.10 116 296 1.8E-39 T 12-10-2018 AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 Gene3D G3DSA:3.30.450.20 1485 1596 3.4E-17 T 12-10-2018 AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 Gene3D G3DSA:3.30.450.20 1597 1720 1.0E-29 T 12-10-2018 AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1927 1945 9.1E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1898 1912 9.1E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1916 1926 9.1E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1951 1964 9.1E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 SUPERFAMILY SSF55785 1597 1720 8.86E-26 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 SUPERFAMILY SSF55781 1315 1492 8.72E-19 T 12-10-2018 AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1856 1966 3.1E-14 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 SUPERFAMILY SSF55785 1498 1607 9.95E-17 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 Gene3D G3DSA:3.30.450.40 1308 1484 4.3E-26 T 12-10-2018 IPR029016 GAF-like domain superfamily AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 SMART SM00091 1486 1554 1.4E-9 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 SMART SM00091 1611 1680 1.7E-6 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 Pfam PF13191 AAA ATPase domain 319 508 8.4E-44 T 12-10-2018 AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 Pfam PF01590 GAF domain 1332 1471 4.7E-11 T 12-10-2018 IPR003018 GAF domain GO:0005515 AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 SMART SM00387 1856 1967 5.3E-25 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 Gene3D G3DSA:3.30.565.10 1814 1968 6.2E-37 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 SMART SM00086 1682 1722 0.27 T 12-10-2018 IPR001610 PAC motif AMJ96_PD00576 d1c5048a4826c03521e34dcd410e39b3 1968 SMART SM00086 1560 1599 100.0 T 12-10-2018 IPR001610 PAC motif AMJ96_CH02637 9ab68280f1413a18e7bff211207ce9b2 1170 SMART SM00454 1 61 1.9E-14 T 12-10-2018 IPR001660 Sterile alpha motif domain GO:0005515 AMJ96_CH02637 9ab68280f1413a18e7bff211207ce9b2 1170 Pfam PF13191 AAA ATPase domain 274 456 4.7E-19 T 12-10-2018 AMJ96_CH02637 9ab68280f1413a18e7bff211207ce9b2 1170 Gene3D G3DSA:1.10.150.50 1 67 1.0E-18 T 12-10-2018 AMJ96_CH02637 9ab68280f1413a18e7bff211207ce9b2 1170 SMART SM00028 799 832 31.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02637 9ab68280f1413a18e7bff211207ce9b2 1170 SMART SM00028 1080 1113 21.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02637 9ab68280f1413a18e7bff211207ce9b2 1170 SMART SM00028 719 752 75.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02637 9ab68280f1413a18e7bff211207ce9b2 1170 Pfam PF00536 SAM domain (Sterile alpha motif) 2 58 1.1E-15 T 12-10-2018 IPR001660 Sterile alpha motif domain GO:0005515 AMJ96_CH02637 9ab68280f1413a18e7bff211207ce9b2 1170 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 81 250 1.7E-29 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH02637 9ab68280f1413a18e7bff211207ce9b2 1170 SUPERFAMILY SSF48452 1033 1152 4.34E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02637 9ab68280f1413a18e7bff211207ce9b2 1170 Gene3D G3DSA:3.30.70.1230 68 263 8.9E-55 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02637 9ab68280f1413a18e7bff211207ce9b2 1170 Gene3D G3DSA:1.25.40.10 860 1165 2.6E-9 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02637 9ab68280f1413a18e7bff211207ce9b2 1170 SMART SM00044 18 236 1.8E-19 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH02637 9ab68280f1413a18e7bff211207ce9b2 1170 SUPERFAMILY SSF52540 265 535 9.19E-15 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02637 9ab68280f1413a18e7bff211207ce9b2 1170 SUPERFAMILY SSF48452 669 956 4.25E-7 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02637 9ab68280f1413a18e7bff211207ce9b2 1170 SUPERFAMILY SSF47769 2 59 3.84E-15 T 12-10-2018 IPR013761 Sterile alpha motif/pointed domain superfamily AMJ96_CH02637 9ab68280f1413a18e7bff211207ce9b2 1170 SUPERFAMILY SSF55073 77 257 5.65E-51 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02637 9ab68280f1413a18e7bff211207ce9b2 1170 Gene3D G3DSA:3.40.50.300 266 370 3.4E-6 T 12-10-2018 AMJ96_CH02637 9ab68280f1413a18e7bff211207ce9b2 1170 Gene3D G3DSA:1.25.40.10 652 845 4.3E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH04039 c4fdcf5b7e37afeb0f7d91230d660aca 467 TIGRFAM TIGR00838 argH: argininosuccinate lyase 14 465 1.5E-183 T 12-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMJ96_CH04039 c4fdcf5b7e37afeb0f7d91230d660aca 467 PRINTS PR00145 Argininosuccinate lyase family signature 204 220 9.9E-67 T 12-10-2018 AMJ96_CH04039 c4fdcf5b7e37afeb0f7d91230d660aca 467 PRINTS PR00145 Argininosuccinate lyase family signature 153 173 9.9E-67 T 12-10-2018 AMJ96_CH04039 c4fdcf5b7e37afeb0f7d91230d660aca 467 PRINTS PR00145 Argininosuccinate lyase family signature 286 302 9.9E-67 T 12-10-2018 AMJ96_CH04039 c4fdcf5b7e37afeb0f7d91230d660aca 467 PRINTS PR00145 Argininosuccinate lyase family signature 112 134 9.9E-67 T 12-10-2018 AMJ96_CH04039 c4fdcf5b7e37afeb0f7d91230d660aca 467 PRINTS PR00145 Argininosuccinate lyase family signature 321 340 9.9E-67 T 12-10-2018 AMJ96_CH04039 c4fdcf5b7e37afeb0f7d91230d660aca 467 PRINTS PR00145 Argininosuccinate lyase family signature 242 266 9.9E-67 T 12-10-2018 AMJ96_CH04039 c4fdcf5b7e37afeb0f7d91230d660aca 467 SUPERFAMILY SSF48557 14 465 7.7E-145 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMJ96_CH04039 c4fdcf5b7e37afeb0f7d91230d660aca 467 ProSitePatterns PS00163 Fumarate lyases signature. 286 295 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AMJ96_CH04039 c4fdcf5b7e37afeb0f7d91230d660aca 467 PRINTS PR00149 Fumarate lyase superfamily signature 113 131 2.7E-28 T 12-10-2018 IPR000362 Fumarate lyase family AMJ96_CH04039 c4fdcf5b7e37afeb0f7d91230d660aca 467 PRINTS PR00149 Fumarate lyase superfamily signature 242 269 2.7E-28 T 12-10-2018 IPR000362 Fumarate lyase family AMJ96_CH04039 c4fdcf5b7e37afeb0f7d91230d660aca 467 PRINTS PR00149 Fumarate lyase superfamily signature 286 302 2.7E-28 T 12-10-2018 IPR000362 Fumarate lyase family AMJ96_CH04039 c4fdcf5b7e37afeb0f7d91230d660aca 467 PRINTS PR00149 Fumarate lyase superfamily signature 158 176 2.7E-28 T 12-10-2018 IPR000362 Fumarate lyase family AMJ96_CH04039 c4fdcf5b7e37afeb0f7d91230d660aca 467 Pfam PF14698 Argininosuccinate lyase C-terminal 374 443 4.2E-26 T 12-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMJ96_CH04039 c4fdcf5b7e37afeb0f7d91230d660aca 467 Gene3D G3DSA:1.20.200.10 130 460 2.1E-188 T 12-10-2018 AMJ96_CH04039 c4fdcf5b7e37afeb0f7d91230d660aca 467 Gene3D G3DSA:1.10.275.10 36 240 2.1E-188 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal AMJ96_CH04039 c4fdcf5b7e37afeb0f7d91230d660aca 467 Pfam PF00206 Lyase 17 311 2.0E-74 T 12-10-2018 IPR022761 Fumarate lyase, N-terminal AMJ96_CH04039 c4fdcf5b7e37afeb0f7d91230d660aca 467 Hamap MF_00006 Argininosuccinate lyase [argH]. 13 465 42.805 T 12-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AMJ96_CH04039 c4fdcf5b7e37afeb0f7d91230d660aca 467 Gene3D G3DSA:1.10.40.30 371 444 2.1E-188 T 12-10-2018 AMJ96_CH02986 564829f4aedb05cc68899e5f378f0a0b 825 Pfam PF00580 UvrD/REP helicase N-terminal domain 58 327 1.4E-70 T 12-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AMJ96_CH02986 564829f4aedb05cc68899e5f378f0a0b 825 Gene3D G3DSA:3.40.50.300 58 327 2.2E-93 T 12-10-2018 AMJ96_CH02986 564829f4aedb05cc68899e5f378f0a0b 825 SUPERFAMILY SSF52540 52 691 8.64E-173 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02986 564829f4aedb05cc68899e5f378f0a0b 825 Pfam PF13361 UvrD-like helicase C-terminal domain 332 661 2.0E-61 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMJ96_CH02986 564829f4aedb05cc68899e5f378f0a0b 825 Gene3D G3DSA:1.10.486.10 439 586 2.1E-109 T 12-10-2018 AMJ96_CH02986 564829f4aedb05cc68899e5f378f0a0b 825 Gene3D G3DSA:1.10.10.160 160 240 2.2E-93 T 12-10-2018 IPR013986 DExx box DNA helicase domain superfamily AMJ96_CH02986 564829f4aedb05cc68899e5f378f0a0b 825 Gene3D G3DSA:3.40.50.300 336 685 2.1E-109 T 12-10-2018 AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 Gene3D G3DSA:3.30.450.20 333 473 1.1E-11 T 12-10-2018 AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 SMART SM00387 587 710 5.9E-30 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 SMART SM00388 479 545 0.0018 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 Gene3D G3DSA:3.30.565.10 548 712 1.0E-44 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 Pfam PF13426 PAS domain 356 463 0.0033 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 SUPERFAMILY SSF47384 469 542 6.08E-9 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 Pfam PF00989 PAS fold 89 163 5.4E-6 T 12-10-2018 IPR013767 PAS fold GO:0006355 AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 SUPERFAMILY SSF55785 347 447 1.92E-7 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 588 708 1.5E-19 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 83 213 2.3E-7 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 Gene3D G3DSA:3.30.450.20 81 209 1.2E-10 T 12-10-2018 AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 Gene3D G3DSA:3.40.50.2300 738 866 1.1E-29 T 12-10-2018 AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 SUPERFAMILY SSF55874 535 712 1.13E-41 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 Pfam PF00072 Response regulator receiver domain 749 859 2.6E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 PRINTS PR00344 Bacterial sensor protein C-terminal signature 670 688 7.3E-20 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 PRINTS PR00344 Bacterial sensor protein C-terminal signature 657 667 7.3E-20 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 PRINTS PR00344 Bacterial sensor protein C-terminal signature 639 653 7.3E-20 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 PRINTS PR00344 Bacterial sensor protein C-terminal signature 694 707 7.3E-20 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 Gene3D G3DSA:1.10.287.130 474 544 2.3E-18 T 12-10-2018 AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 SMART SM00091 86 153 0.0024 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 SMART SM00091 346 415 0.0032 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 SMART SM00091 219 286 1.3 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 SMART SM00448 747 860 3.9E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 SUPERFAMILY SSF52172 748 865 2.99E-30 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH02390 4a243a2a512b3004cec30d55062906fb 866 SUPERFAMILY SSF55785 82 205 5.93E-10 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH02609 6c1a9c368208a11c21d1b4eab95cd68c 443 Gene3D G3DSA:3.30.70.270 271 438 3.0E-50 T 12-10-2018 AMJ96_CH02609 6c1a9c368208a11c21d1b4eab95cd68c 443 Pfam PF00990 Diguanylate cyclase, GGDEF domain 273 430 1.1E-40 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH02609 6c1a9c368208a11c21d1b4eab95cd68c 443 SUPERFAMILY SSF55073 278 432 3.69E-45 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02609 6c1a9c368208a11c21d1b4eab95cd68c 443 SUPERFAMILY SSF52172 18 140 9.11E-15 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH02609 6c1a9c368208a11c21d1b4eab95cd68c 443 Pfam PF00072 Response regulator receiver domain 144 256 7.6E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02609 6c1a9c368208a11c21d1b4eab95cd68c 443 Pfam PF00072 Response regulator receiver domain 21 129 2.9E-6 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02609 6c1a9c368208a11c21d1b4eab95cd68c 443 Gene3D G3DSA:3.40.50.2300 19 138 9.2E-15 T 12-10-2018 AMJ96_CH02609 6c1a9c368208a11c21d1b4eab95cd68c 443 SMART SM00448 19 133 8.3E-5 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02609 6c1a9c368208a11c21d1b4eab95cd68c 443 SMART SM00448 142 256 4.1E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02609 6c1a9c368208a11c21d1b4eab95cd68c 443 Gene3D G3DSA:3.40.50.2300 139 270 7.7E-30 T 12-10-2018 AMJ96_CH02609 6c1a9c368208a11c21d1b4eab95cd68c 443 SMART SM00267 262 434 4.9E-50 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH02609 6c1a9c368208a11c21d1b4eab95cd68c 443 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 271 432 2.5E-42 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH02609 6c1a9c368208a11c21d1b4eab95cd68c 443 SUPERFAMILY SSF52172 141 278 8.25E-32 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH00320 a881f78b18af0af2f82ebb9c16699c48 289 SUPERFAMILY SSF51735 1 268 2.26E-32 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00320 a881f78b18af0af2f82ebb9c16699c48 289 Gene3D G3DSA:3.40.50.720 1 286 1.4E-88 T 12-10-2018 AMJ96_CH00320 a881f78b18af0af2f82ebb9c16699c48 289 Pfam PF01370 NAD dependent epimerase/dehydratase family 9 164 1.8E-6 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_CH01659 b2ff054cbd29bd4ce1b02435f8d453e9 418 Pfam PF01471 Putative peptidoglycan binding domain 223 257 9.2E-5 T 12-10-2018 IPR002477 Peptidoglycan binding-like AMJ96_CH01659 b2ff054cbd29bd4ce1b02435f8d453e9 418 SUPERFAMILY SSF141523 29 138 2.49E-29 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH01659 b2ff054cbd29bd4ce1b02435f8d453e9 418 Gene3D G3DSA:2.40.440.10 29 146 1.5E-28 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH01659 b2ff054cbd29bd4ce1b02435f8d453e9 418 SUPERFAMILY SSF47090 212 261 2.43E-7 T 12-10-2018 IPR036365 PGBD-like superfamily AMJ96_CH01659 b2ff054cbd29bd4ce1b02435f8d453e9 418 Pfam PF03734 L,D-transpeptidase catalytic domain 31 138 7.1E-20 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMJ96_CH01659 b2ff054cbd29bd4ce1b02435f8d453e9 418 Gene3D G3DSA:1.10.101.10 206 267 2.5E-6 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMJ96_CH01659 b2ff054cbd29bd4ce1b02435f8d453e9 418 PIRSF PIRSF029342 14 418 2.4E-117 T 12-10-2018 IPR016915 Uncharacterised conserved protein UCP029342 AMJ96_CH03220 4f6471c624b80cddadc6e6dfd77c7a9a 186 Gene3D G3DSA:1.25.40.10 62 183 3.4E-14 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03220 4f6471c624b80cddadc6e6dfd77c7a9a 186 SUPERFAMILY SSF48452 65 178 9.66E-16 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02517 293b0cc72e137a40db1239405553631e 308 Pfam PF00005 ABC transporter 21 163 3.8E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02517 293b0cc72e137a40db1239405553631e 308 SUPERFAMILY SSF52540 3 226 9.85E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02517 293b0cc72e137a40db1239405553631e 308 Gene3D G3DSA:3.40.50.300 1 235 1.7E-63 T 12-10-2018 AMJ96_CH02517 293b0cc72e137a40db1239405553631e 308 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02517 293b0cc72e137a40db1239405553631e 308 SMART SM00382 30 214 1.4E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PB00387 40ed0c61ae1305e6a492b7d526f158f3 162 TIGRFAM TIGR02935 TIGR02935: probable nitrogen fixation protein 21 159 6.1E-63 T 12-10-2018 IPR004952 Uncharacterised protein family UPF0460 AMJ96_PB00387 40ed0c61ae1305e6a492b7d526f158f3 162 PIRSF PIRSF005788 4 161 8.4E-68 T 12-10-2018 IPR004952 Uncharacterised protein family UPF0460 AMJ96_PB00387 40ed0c61ae1305e6a492b7d526f158f3 162 Pfam PF03270 Protein of unknown function, DUF269 40 160 2.7E-51 T 12-10-2018 IPR004952 Uncharacterised protein family UPF0460 AMJ96_PB00387 40ed0c61ae1305e6a492b7d526f158f3 162 Gene3D G3DSA:1.10.3100.20 8 161 1.1E-64 T 12-10-2018 AMJ96_CH00049 d1e34bf78d02f112c28bfbb52efbd110 175 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 1 171 41.225 T 12-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 AMJ96_CH00049 d1e34bf78d02f112c28bfbb52efbd110 175 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 2 170 2.7E-83 T 12-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 AMJ96_CH00049 d1e34bf78d02f112c28bfbb52efbd110 175 PIRSF PIRSF039093 1 174 2.1E-82 T 12-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 AMJ96_CH00049 d1e34bf78d02f112c28bfbb52efbd110 175 SUPERFAMILY SSF56235 1 171 4.27E-57 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMJ96_CH00049 d1e34bf78d02f112c28bfbb52efbd110 175 Gene3D G3DSA:3.60.20.10 1 172 5.1E-69 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMJ96_CH00049 d1e34bf78d02f112c28bfbb52efbd110 175 Pfam PF00227 Proteasome subunit 2 169 1.3E-22 T 12-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 AMJ96_CH02608 a5d43a5c927df933cfed42ed15a4bbb5 262 Pfam PF00072 Response regulator receiver domain 130 238 4.3E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02608 a5d43a5c927df933cfed42ed15a4bbb5 262 SUPERFAMILY SSF52172 4 127 1.41E-11 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH02608 a5d43a5c927df933cfed42ed15a4bbb5 262 Gene3D G3DSA:3.40.50.2300 3 123 5.2E-11 T 12-10-2018 AMJ96_CH02608 a5d43a5c927df933cfed42ed15a4bbb5 262 Gene3D G3DSA:3.40.50.12740 127 262 2.9E-30 T 12-10-2018 AMJ96_CH02608 a5d43a5c927df933cfed42ed15a4bbb5 262 SMART SM00448 5 119 0.056 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02608 a5d43a5c927df933cfed42ed15a4bbb5 262 SMART SM00448 128 242 6.4E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02608 a5d43a5c927df933cfed42ed15a4bbb5 262 SUPERFAMILY SSF52172 127 256 1.2E-30 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PD00041 bb15e95345e24a6382908a1bb2f83431 275 Gene3D G3DSA:3.40.50.720 1 174 6.0E-57 T 12-10-2018 AMJ96_PD00041 bb15e95345e24a6382908a1bb2f83431 275 Gene3D G3DSA:1.10.3640.10 175 275 3.2E-39 T 12-10-2018 IPR037161 Semialdehyde dehydrogenase-like, C-terminal AMJ96_PD00041 bb15e95345e24a6382908a1bb2f83431 275 Pfam PF16896 Phosphogluconate dehydrogenase (decarboxylating) C-term 121 275 1.4E-72 T 12-10-2018 IPR031663 Phosphogluconate dehydrogenase (decarboxylating) , C-terminal AMJ96_PD00041 bb15e95345e24a6382908a1bb2f83431 275 SUPERFAMILY SSF51735 3 166 3.97E-15 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00041 bb15e95345e24a6382908a1bb2f83431 275 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 90 1.2E-5 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMJ96_PC00455 8f02c11ce6a8d20d4a454823bce29eb6 362 Pfam PF00487 Fatty acid desaturase 75 318 8.4E-36 T 12-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 AMJ96_CH00889 071af7d2820bac81768059ea8fba0b93 229 Hamap MF_00052_B Ribonuclease HII [rnhB]. 35 214 36.554 T 12-10-2018 IPR022898 Ribonuclease HII GO:0004523 AMJ96_CH00889 071af7d2820bac81768059ea8fba0b93 229 Gene3D G3DSA:3.30.420.10 21 227 3.0E-71 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_CH00889 071af7d2820bac81768059ea8fba0b93 229 Pfam PF01351 Ribonuclease HII 37 212 9.9E-39 T 12-10-2018 IPR024567 Ribonuclease HII/HIII domain AMJ96_CH00889 071af7d2820bac81768059ea8fba0b93 229 SUPERFAMILY SSF53098 26 219 1.82E-65 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_CH03903 061170aa2186472bb4395b06b93ec94c 340 Gene3D G3DSA:3.40.50.2300 167 339 2.4E-30 T 12-10-2018 AMJ96_CH03903 061170aa2186472bb4395b06b93ec94c 340 Gene3D G3DSA:3.40.50.2300 72 330 2.4E-30 T 12-10-2018 AMJ96_CH03903 061170aa2186472bb4395b06b93ec94c 340 SMART SM00354 2 72 1.7E-19 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03903 061170aa2186472bb4395b06b93ec94c 340 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 12-10-2018 AMJ96_CH03903 061170aa2186472bb4395b06b93ec94c 340 Gene3D G3DSA:1.10.260.40 1 60 6.4E-20 T 12-10-2018 AMJ96_CH03903 061170aa2186472bb4395b06b93ec94c 340 SUPERFAMILY SSF53822 61 324 4.28E-36 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH03903 061170aa2186472bb4395b06b93ec94c 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 48 2.5E-15 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03903 061170aa2186472bb4395b06b93ec94c 340 SUPERFAMILY SSF47413 2 60 4.22E-16 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH03903 061170aa2186472bb4395b06b93ec94c 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 4 14 6.9E-5 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03903 061170aa2186472bb4395b06b93ec94c 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 14 24 6.9E-5 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03903 061170aa2186472bb4395b06b93ec94c 340 Pfam PF13407 Periplasmic binding protein domain 64 319 5.6E-40 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_PD00409 70c7a853a36dfac610c7115d661a21dc 466 Gene3D G3DSA:3.30.565.10 319 466 3.9E-39 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PD00409 70c7a853a36dfac610c7115d661a21dc 466 SMART SM00388 248 313 4.5E-13 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PD00409 70c7a853a36dfac610c7115d661a21dc 466 SUPERFAMILY SSF47384 231 313 3.92E-16 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_PD00409 70c7a853a36dfac610c7115d661a21dc 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 409 6.8E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00409 70c7a853a36dfac610c7115d661a21dc 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 423 6.8E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00409 70c7a853a36dfac610c7115d661a21dc 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 451 464 6.8E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00409 70c7a853a36dfac610c7115d661a21dc 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 427 445 6.8E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00409 70c7a853a36dfac610c7115d661a21dc 466 Pfam PF00512 His Kinase A (phospho-acceptor) domain 248 313 5.0E-12 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PD00409 70c7a853a36dfac610c7115d661a21dc 466 SMART SM00387 358 466 6.2E-31 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PD00409 70c7a853a36dfac610c7115d661a21dc 466 Gene3D G3DSA:1.10.287.130 199 313 1.4E-18 T 12-10-2018 AMJ96_PD00409 70c7a853a36dfac610c7115d661a21dc 466 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 358 465 2.1E-22 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PD00409 70c7a853a36dfac610c7115d661a21dc 466 SUPERFAMILY SSF55874 303 465 3.14E-41 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PD00409 70c7a853a36dfac610c7115d661a21dc 466 Pfam PF08521 Two-component sensor kinase N-terminal 33 171 4.6E-34 T 12-10-2018 IPR013727 Two-component sensor kinase, N-terminal AMJ96_CH00245 e31bf5eab820b6997cb9b7ae2cdf672a 82 Gene3D G3DSA:1.10.1200.10 1 79 1.1E-12 T 12-10-2018 IPR036736 ACP-like superfamily AMJ96_CH00245 e31bf5eab820b6997cb9b7ae2cdf672a 82 Pfam PF00550 Phosphopantetheine attachment site 33 64 2.3E-5 T 12-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMJ96_CH00245 e31bf5eab820b6997cb9b7ae2cdf672a 82 SUPERFAMILY SSF47336 21 73 2.62E-8 T 12-10-2018 IPR036736 ACP-like superfamily AMJ96_PA00246 08f7bb289e1a5f9ef0c4a71334f28ee6 324 Gene3D G3DSA:3.40.50.2300 38 305 1.8E-58 T 12-10-2018 AMJ96_PA00246 08f7bb289e1a5f9ef0c4a71334f28ee6 324 Pfam PF13407 Periplasmic binding protein domain 29 286 8.9E-30 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_PA00246 08f7bb289e1a5f9ef0c4a71334f28ee6 324 Gene3D G3DSA:3.40.50.2300 139 307 1.8E-58 T 12-10-2018 AMJ96_PA00246 08f7bb289e1a5f9ef0c4a71334f28ee6 324 SUPERFAMILY SSF53822 29 313 9.09E-43 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH03556 d353ec147e517a21036c2a8521581f97 354 Gene3D G3DSA:3.30.2350.10 104 354 2.4E-75 T 12-10-2018 AMJ96_CH03556 d353ec147e517a21036c2a8521581f97 354 SMART SM00363 36 102 8.5E-5 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH03556 d353ec147e517a21036c2a8521581f97 354 Pfam PF01479 S4 domain 37 82 2.8E-7 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH03556 d353ec147e517a21036c2a8521581f97 354 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 158 172 - T 12-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH03556 d353ec147e517a21036c2a8521581f97 354 Pfam PF00849 RNA pseudouridylate synthase 111 281 1.4E-30 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH03556 d353ec147e517a21036c2a8521581f97 354 SUPERFAMILY SSF55174 34 124 7.4E-10 T 12-10-2018 AMJ96_CH03556 d353ec147e517a21036c2a8521581f97 354 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 32 353 5.1E-91 T 12-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH03556 d353ec147e517a21036c2a8521581f97 354 Gene3D G3DSA:3.10.290.10 26 93 1.5E-14 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMJ96_CH03556 d353ec147e517a21036c2a8521581f97 354 SUPERFAMILY SSF55120 99 353 2.26E-75 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH02541 9afeb4b405f585e46bedbe416e905c08 342 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 133 2.5E-24 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_CH02541 9afeb4b405f585e46bedbe416e905c08 342 Gene3D G3DSA:3.90.180.10 1 342 2.3E-99 T 12-10-2018 AMJ96_CH02541 9afeb4b405f585e46bedbe416e905c08 342 SMART SM00829 5 339 9.6E-25 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_CH02541 9afeb4b405f585e46bedbe416e905c08 342 SUPERFAMILY SSF51735 143 313 1.55E-50 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02541 9afeb4b405f585e46bedbe416e905c08 342 Pfam PF00107 Zinc-binding dehydrogenase 177 303 7.0E-40 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_CH02541 9afeb4b405f585e46bedbe416e905c08 342 SUPERFAMILY SSF50129 1 170 3.3E-41 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_CH04074 b95d2a97128032aeee2dfd8c7625d7bb 410 Pfam PF03734 L,D-transpeptidase catalytic domain 101 176 1.4E-5 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMJ96_CH04074 b95d2a97128032aeee2dfd8c7625d7bb 410 SUPERFAMILY SSF141523 58 176 2.35E-7 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH00844 e6cf6ba511e1b64ca67989c651734f71 523 Pfam PF13393 Histidyl-tRNA synthetase 18 363 1.1E-43 T 12-10-2018 AMJ96_CH00844 e6cf6ba511e1b64ca67989c651734f71 523 SUPERFAMILY SSF55681 13 371 6.77E-72 T 12-10-2018 AMJ96_CH00844 e6cf6ba511e1b64ca67989c651734f71 523 Gene3D G3DSA:3.30.930.10 2 375 9.8E-98 T 12-10-2018 AMJ96_CH00844 e6cf6ba511e1b64ca67989c651734f71 523 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 11 491 25.931 T 12-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 AMJ96_CH00844 e6cf6ba511e1b64ca67989c651734f71 523 Pfam PF03129 Anticodon binding domain 384 466 1.5E-9 T 12-10-2018 IPR004154 Anticodon-binding AMJ96_CH00844 e6cf6ba511e1b64ca67989c651734f71 523 Gene3D G3DSA:3.40.50.800 381 495 1.7E-21 T 12-10-2018 IPR036621 Anticodon-binding domain superfamily AMJ96_CH00844 e6cf6ba511e1b64ca67989c651734f71 523 SUPERFAMILY SSF52954 381 493 8.83E-18 T 12-10-2018 AMJ96_CH00844 e6cf6ba511e1b64ca67989c651734f71 523 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 15 459 3.0E-114 T 12-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 AMJ96_CH00844 e6cf6ba511e1b64ca67989c651734f71 523 PIRSF PIRSF001549 9 474 3.7E-127 T 12-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 AMJ96_PC00430 4fa09008e5c856e3d466626f0aa0ebb5 319 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 301 317 1.4E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_PC00430 4fa09008e5c856e3d466626f0aa0ebb5 319 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 286 301 1.4E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_PC00430 4fa09008e5c856e3d466626f0aa0ebb5 319 Pfam PF01965 DJ-1/PfpI family 39 177 6.4E-7 T 12-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 AMJ96_PC00430 4fa09008e5c856e3d466626f0aa0ebb5 319 Gene3D G3DSA:3.40.50.880 8 202 1.2E-42 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_PC00430 4fa09008e5c856e3d466626f0aa0ebb5 319 Gene3D G3DSA:1.10.10.60 213 319 1.6E-29 T 12-10-2018 AMJ96_PC00430 4fa09008e5c856e3d466626f0aa0ebb5 319 SUPERFAMILY SSF46689 270 319 1.21E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PC00430 4fa09008e5c856e3d466626f0aa0ebb5 319 Pfam PF12833 Helix-turn-helix domain 240 318 2.1E-25 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PC00430 4fa09008e5c856e3d466626f0aa0ebb5 319 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 271 313 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_PC00430 4fa09008e5c856e3d466626f0aa0ebb5 319 SUPERFAMILY SSF52317 11 195 1.57E-35 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_PC00430 4fa09008e5c856e3d466626f0aa0ebb5 319 SMART SM00342 234 317 6.9E-31 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH00797 ae9f9310292a68bfcf0c9044aa62c235 338 SUPERFAMILY SSF51569 9 290 2.93E-79 T 12-10-2018 AMJ96_CH00797 ae9f9310292a68bfcf0c9044aa62c235 338 Gene3D G3DSA:3.90.1210.10 286 338 2.6E-15 T 12-10-2018 AMJ96_CH00797 ae9f9310292a68bfcf0c9044aa62c235 338 SUPERFAMILY SSF51269 272 337 3.66E-16 T 12-10-2018 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily Reactome: R-HSA-4085001 AMJ96_CH00797 ae9f9310292a68bfcf0c9044aa62c235 338 Pfam PF03102 NeuB family 29 266 2.0E-82 T 12-10-2018 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 AMJ96_CH00797 ae9f9310292a68bfcf0c9044aa62c235 338 SMART SM00858 280 338 1.4E-11 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMJ96_CH00797 ae9f9310292a68bfcf0c9044aa62c235 338 Gene3D G3DSA:3.20.20.70 4 285 5.9E-98 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH00797 ae9f9310292a68bfcf0c9044aa62c235 338 Pfam PF08666 SAF domain 281 337 1.4E-9 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMJ96_CH02929 ab91c5ba0a8d4824ce1957ba3fbb3a13 207 ProSitePatterns PS01081 TetR-type HTH domain signature. 38 68 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMJ96_CH02929 ab91c5ba0a8d4824ce1957ba3fbb3a13 207 SUPERFAMILY SSF48498 93 205 9.85E-22 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH02929 ab91c5ba0a8d4824ce1957ba3fbb3a13 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 47 70 2.2E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH02929 ab91c5ba0a8d4824ce1957ba3fbb3a13 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 39 2.2E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH02929 ab91c5ba0a8d4824ce1957ba3fbb3a13 207 SUPERFAMILY SSF46689 13 96 3.03E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02929 ab91c5ba0a8d4824ce1957ba3fbb3a13 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 72 3.2E-15 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH02929 ab91c5ba0a8d4824ce1957ba3fbb3a13 207 Gene3D G3DSA:1.10.357.10 80 207 7.3E-22 T 12-10-2018 AMJ96_CH02929 ab91c5ba0a8d4824ce1957ba3fbb3a13 207 Gene3D G3DSA:1.10.10.60 12 79 2.3E-25 T 12-10-2018 AMJ96_PD00221 8399b751bc1f7c1123bb98a23872fc73 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 286 5.2E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00221 8399b751bc1f7c1123bb98a23872fc73 296 SUPERFAMILY SSF161098 23 286 5.89E-39 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00221 8399b751bc1f7c1123bb98a23872fc73 296 Gene3D G3DSA:1.10.3720.10 61 293 4.0E-34 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01948 58bd06fe77dce3e437161745c60f02f4 161 Gene3D G3DSA:2.60.120.1140 29 161 7.0E-44 T 12-10-2018 IPR038695 Saro_0823-like superfamily AMJ96_CH01948 58bd06fe77dce3e437161745c60f02f4 161 Pfam PF02643 Uncharacterized ACR, COG1430 50 152 2.1E-32 T 12-10-2018 IPR003795 Protein of unknown function DUF192 AMJ96_CH02046 dc77aae9abddf5b5cf7a889f52d82c1a 80 Gene3D G3DSA:2.30.30.100 1 79 1.7E-32 T 12-10-2018 AMJ96_CH02046 dc77aae9abddf5b5cf7a889f52d82c1a 80 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 6 66 3.0E-32 T 12-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AMJ96_CH02046 dc77aae9abddf5b5cf7a889f52d82c1a 80 Pfam PF17209 Hfq protein 8 70 6.1E-32 T 12-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AMJ96_CH02046 dc77aae9abddf5b5cf7a889f52d82c1a 80 SUPERFAMILY SSF50182 7 66 8.5E-24 T 12-10-2018 IPR010920 LSM domain superfamily AMJ96_CH02046 dc77aae9abddf5b5cf7a889f52d82c1a 80 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 1 66 29.112 T 12-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AMJ96_PC00331 1a4e7fd8e68e5f9d2c3c755f6f607887 434 Gene3D G3DSA:3.40.50.300 155 364 1.6E-11 T 12-10-2018 AMJ96_PC00331 1a4e7fd8e68e5f9d2c3c755f6f607887 434 SUPERFAMILY SSF52540 149 394 6.93E-19 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03763 f7de21dbe1a032ee76411223f47a75ed 602 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 359 519 2.4E-28 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH03763 f7de21dbe1a032ee76411223f47a75ed 602 SUPERFAMILY SSF58104 228 534 3.01E-61 T 12-10-2018 AMJ96_CH03763 f7de21dbe1a032ee76411223f47a75ed 602 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 314 343 1.1E-27 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH03763 f7de21dbe1a032ee76411223f47a75ed 602 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 420 449 1.1E-27 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH03763 f7de21dbe1a032ee76411223f47a75ed 602 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 391 418 1.1E-27 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH03763 f7de21dbe1a032ee76411223f47a75ed 602 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 26 1.1E-27 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH03763 f7de21dbe1a032ee76411223f47a75ed 602 Gene3D G3DSA:1.20.1480.50 167 259 4.6E-9 T 12-10-2018 AMJ96_CH03763 f7de21dbe1a032ee76411223f47a75ed 602 SMART SM00304 208 260 8.3E-6 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH03763 f7de21dbe1a032ee76411223f47a75ed 602 SMART SM00283 300 533 1.4E-62 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH03763 f7de21dbe1a032ee76411223f47a75ed 602 Gene3D G3DSA:1.10.287.950 260 535 5.3E-68 T 12-10-2018 AMJ96_CH03763 f7de21dbe1a032ee76411223f47a75ed 602 Pfam PF12729 Four helix bundle sensory module for signal transduction 3 181 1.0E-7 T 12-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain AMJ96_CH00484 98f6d426f0599eaac549a15983fb8111 415 SUPERFAMILY SSF53067 101 394 3.66E-34 T 12-10-2018 AMJ96_CH00484 98f6d426f0599eaac549a15983fb8111 415 Pfam PF13412 Winged helix-turn-helix DNA-binding 32 75 3.0E-7 T 12-10-2018 AMJ96_CH00484 98f6d426f0599eaac549a15983fb8111 415 Gene3D G3DSA:3.30.420.40 96 210 4.2E-8 T 12-10-2018 AMJ96_CH00484 98f6d426f0599eaac549a15983fb8111 415 Gene3D G3DSA:3.30.420.40 211 395 6.0E-23 T 12-10-2018 AMJ96_CH00484 98f6d426f0599eaac549a15983fb8111 415 Pfam PF00480 ROK family 103 392 1.4E-18 T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AMJ96_CH00484 98f6d426f0599eaac549a15983fb8111 415 Gene3D G3DSA:1.10.10.10 20 95 1.3E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00484 98f6d426f0599eaac549a15983fb8111 415 SUPERFAMILY SSF46785 29 95 6.83E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PB00422 2a09cca76f88a0d1e32e0428b281c989 161 Gene3D G3DSA:1.10.3100.20 7 161 1.1E-59 T 12-10-2018 AMJ96_PB00422 2a09cca76f88a0d1e32e0428b281c989 161 Pfam PF03270 Protein of unknown function, DUF269 40 160 8.6E-49 T 12-10-2018 IPR004952 Uncharacterised protein family UPF0460 AMJ96_PB00422 2a09cca76f88a0d1e32e0428b281c989 161 TIGRFAM TIGR02935 TIGR02935: probable nitrogen fixation protein 21 159 5.6E-59 T 12-10-2018 IPR004952 Uncharacterised protein family UPF0460 AMJ96_PB00422 2a09cca76f88a0d1e32e0428b281c989 161 PIRSF PIRSF005788 1 161 4.0E-67 T 12-10-2018 IPR004952 Uncharacterised protein family UPF0460 AMJ96_CH02087 b2efbdd4892b62702e3471561bf60be5 267 SUPERFAMILY SSF51735 3 191 5.45E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02087 b2efbdd4892b62702e3471561bf60be5 267 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH02087 b2efbdd4892b62702e3471561bf60be5 267 Pfam PF00106 short chain dehydrogenase 3 188 2.6E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02087 b2efbdd4892b62702e3471561bf60be5 267 Gene3D G3DSA:3.40.50.720 2 266 2.4E-46 T 12-10-2018 AMJ96_CH02087 b2efbdd4892b62702e3471561bf60be5 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 3.4E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02087 b2efbdd4892b62702e3471561bf60be5 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 3.4E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02087 b2efbdd4892b62702e3471561bf60be5 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 3.4E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02087 b2efbdd4892b62702e3471561bf60be5 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 7.0E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02087 b2efbdd4892b62702e3471561bf60be5 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 7.0E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02087 b2efbdd4892b62702e3471561bf60be5 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 7.0E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02087 b2efbdd4892b62702e3471561bf60be5 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 7.0E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02087 b2efbdd4892b62702e3471561bf60be5 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 7.0E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00184 f7f1049184e1930f537953974cd50b36 306 PIRSF PIRSF037112 1 306 7.1E-109 T 12-10-2018 IPR017113 Antirestriction, ArdC AMJ96_PB00184 f7f1049184e1930f537953974cd50b36 306 Pfam PF08401 Domain of unknown function (DUF1738) 11 130 2.8E-37 T 12-10-2018 IPR013610 Domain of unknown function DUF1738 AMJ96_CH02273 cbf2bc3b67d32ef787f7fe3551928fed 467 Pfam PF03313 Serine dehydratase alpha chain 196 461 2.3E-102 T 12-10-2018 IPR005130 Serine dehydratase-like, alpha subunit AMJ96_CH02273 cbf2bc3b67d32ef787f7fe3551928fed 467 Pfam PF03315 Serine dehydratase beta chain 4 162 3.2E-54 T 12-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 AMJ96_CH02273 cbf2bc3b67d32ef787f7fe3551928fed 467 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 4 464 1.3E-190 T 12-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 AMJ96_CH02273 cbf2bc3b67d32ef787f7fe3551928fed 467 SUPERFAMILY SSF143548 17 164 4.18E-44 T 12-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 AMJ96_CH02273 cbf2bc3b67d32ef787f7fe3551928fed 467 Gene3D G3DSA:3.30.1330.90 11 166 4.0E-51 T 12-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 AMJ96_PD00139 14d6347bd9e8542a7573172ffc467d52 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 291 4.8E-10 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00139 14d6347bd9e8542a7573172ffc467d52 303 SUPERFAMILY SSF161098 40 302 1.7E-58 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00139 14d6347bd9e8542a7573172ffc467d52 303 Gene3D G3DSA:1.10.3720.10 32 296 2.1E-48 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03069 966b79d8483ef978b2d3e082b95b64d6 419 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 135 152 - T 12-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 AMJ96_CH03069 966b79d8483ef978b2d3e082b95b64d6 419 SUPERFAMILY SSF53850 24 415 2.81E-74 T 12-10-2018 AMJ96_CH03069 966b79d8483ef978b2d3e082b95b64d6 419 Gene3D G3DSA:3.40.190.10 44 353 2.4E-67 T 12-10-2018 AMJ96_CH03069 966b79d8483ef978b2d3e082b95b64d6 419 Pfam PF13416 Bacterial extracellular solute-binding protein 45 334 1.2E-36 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH03069 966b79d8483ef978b2d3e082b95b64d6 419 Gene3D G3DSA:3.40.190.10 139 404 2.4E-67 T 12-10-2018 AMJ96_CH02670 6a791cd42d87d103b71ec2973793c2a6 324 PRINTS PR00412 Epoxide hydrolase signature 68 86 4.2E-8 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_CH02670 6a791cd42d87d103b71ec2973793c2a6 324 PRINTS PR00412 Epoxide hydrolase signature 262 278 4.2E-8 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_CH02670 6a791cd42d87d103b71ec2973793c2a6 324 PRINTS PR00412 Epoxide hydrolase signature 294 316 4.2E-8 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_CH02670 6a791cd42d87d103b71ec2973793c2a6 324 PRINTS PR00412 Epoxide hydrolase signature 148 161 4.2E-8 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_CH02670 6a791cd42d87d103b71ec2973793c2a6 324 Gene3D G3DSA:3.40.50.1820 36 322 4.1E-59 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02670 6a791cd42d87d103b71ec2973793c2a6 324 SUPERFAMILY SSF53474 38 319 3.98E-72 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02670 6a791cd42d87d103b71ec2973793c2a6 324 Pfam PF00561 alpha/beta hydrolase fold 62 305 2.9E-25 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH02670 6a791cd42d87d103b71ec2973793c2a6 324 PRINTS PR00111 Alpha/beta hydrolase fold signature 87 102 1.7E-6 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH02670 6a791cd42d87d103b71ec2973793c2a6 324 PRINTS PR00111 Alpha/beta hydrolase fold signature 264 278 1.7E-6 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH00922 38104252bf4ea902b8f870614e733f69 414 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 57 72 3.2E-27 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMJ96_CH00922 38104252bf4ea902b8f870614e733f69 414 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 78 98 3.2E-27 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMJ96_CH00922 38104252bf4ea902b8f870614e733f69 414 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 27 52 3.2E-27 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMJ96_CH00922 38104252bf4ea902b8f870614e733f69 414 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 99 119 3.2E-27 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMJ96_CH00922 38104252bf4ea902b8f870614e733f69 414 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 138 164 3.2E-27 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMJ96_CH00922 38104252bf4ea902b8f870614e733f69 414 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 175 197 3.2E-27 T 12-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 AMJ96_CH00922 38104252bf4ea902b8f870614e733f69 414 Pfam PF00355 Rieske [2Fe-2S] domain 43 119 5.7E-16 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMJ96_CH00922 38104252bf4ea902b8f870614e733f69 414 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 177 399 1.1E-39 T 12-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 AMJ96_CH00922 38104252bf4ea902b8f870614e733f69 414 SUPERFAMILY SSF55961 155 403 5.68E-54 T 12-10-2018 AMJ96_CH00922 38104252bf4ea902b8f870614e733f69 414 Gene3D G3DSA:3.90.380.10 14 396 1.9E-161 T 12-10-2018 AMJ96_CH00922 38104252bf4ea902b8f870614e733f69 414 SUPERFAMILY SSF50022 8 152 1.06E-46 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMJ96_CH00922 38104252bf4ea902b8f870614e733f69 414 Gene3D G3DSA:2.102.10.10 40 158 1.9E-161 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMJ96_CH01173 e8b8c975dd7d942b05e5051df2a2e650 148 SUPERFAMILY SSF46785 1 137 4.65E-32 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01173 e8b8c975dd7d942b05e5051df2a2e650 148 Pfam PF02082 Transcriptional regulator 1 82 3.7E-26 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type AMJ96_CH01173 e8b8c975dd7d942b05e5051df2a2e650 148 Gene3D G3DSA:1.10.10.10 1 145 1.7E-43 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01173 e8b8c975dd7d942b05e5051df2a2e650 148 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 48 66 - T 12-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site AMJ96_CH01173 e8b8c975dd7d942b05e5051df2a2e650 148 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 134 3.0E-34 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type AMJ96_CH00347 4c2df8eaddb1a3ad5421924189f436a0 444 Pfam PF13533 Biotin-lipoyl like 74 112 7.6E-6 T 12-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMJ96_CH00347 4c2df8eaddb1a3ad5421924189f436a0 444 Gene3D G3DSA:2.40.50.100 73 97 8.4E-6 T 12-10-2018 AMJ96_CH00347 4c2df8eaddb1a3ad5421924189f436a0 444 Pfam PF13437 HlyD family secretion protein 296 398 1.8E-13 T 12-10-2018 AMJ96_CH00347 4c2df8eaddb1a3ad5421924189f436a0 444 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 341 365 1.2E-49 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH00347 4c2df8eaddb1a3ad5421924189f436a0 444 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 408 423 1.2E-49 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH00347 4c2df8eaddb1a3ad5421924189f436a0 444 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 76 96 1.2E-49 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH00347 4c2df8eaddb1a3ad5421924189f436a0 444 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 34 57 1.2E-49 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH00347 4c2df8eaddb1a3ad5421924189f436a0 444 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 365 388 1.2E-49 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH00347 4c2df8eaddb1a3ad5421924189f436a0 444 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 308 329 1.2E-49 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH00347 4c2df8eaddb1a3ad5421924189f436a0 444 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 423 443 1.2E-49 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH00347 4c2df8eaddb1a3ad5421924189f436a0 444 Gene3D G3DSA:1.10.287.470 98 166 8.4E-6 T 12-10-2018 AMJ96_CH00347 4c2df8eaddb1a3ad5421924189f436a0 444 Gene3D G3DSA:2.40.50.100 233 332 1.6E-14 T 12-10-2018 AMJ96_CH00347 4c2df8eaddb1a3ad5421924189f436a0 444 Gene3D G3DSA:1.10.287.470 234 295 1.6E-14 T 12-10-2018 AMJ96_CH00347 4c2df8eaddb1a3ad5421924189f436a0 444 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 29 444 6.8E-111 T 12-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 AMJ96_CH00347 4c2df8eaddb1a3ad5421924189f436a0 444 Gene3D G3DSA:2.40.30.170 333 420 1.6E-14 T 12-10-2018 AMJ96_PB00189 4b9dfc7dfa398b72b9e843e42eb37368 99 Pfam PF04956 TrbC/VIRB2 family 5 96 1.4E-25 T 12-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMJ96_CH02848 37a56e89744aabf16ae1ff81ebf3def9 144 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 1 142 19.193 T 12-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMJ96_CH02848 37a56e89744aabf16ae1ff81ebf3def9 144 Gene3D G3DSA:3.40.50.960 1 144 2.1E-43 T 12-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMJ96_CH02848 37a56e89744aabf16ae1ff81ebf3def9 144 SUPERFAMILY SSF52121 2 139 1.7E-38 T 12-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMJ96_CH02848 37a56e89744aabf16ae1ff81ebf3def9 144 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 5 135 7.6E-30 T 12-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMJ96_CH04207 26c56d89540447be7fa3039890523d60 188 Gene3D G3DSA:2.40.30.60 7 91 6.4E-20 T 12-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 AMJ96_CH04207 26c56d89540447be7fa3039890523d60 188 Gene3D G3DSA:2.30.30.240 94 172 1.7E-13 T 12-10-2018 AMJ96_CH04207 26c56d89540447be7fa3039890523d60 188 SUPERFAMILY SSF50447 7 91 3.21E-19 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMJ96_CH04207 26c56d89540447be7fa3039890523d60 188 Pfam PF05239 PRC-barrel domain 97 167 4.7E-13 T 12-10-2018 IPR027275 PRC-barrel domain AMJ96_CH04207 26c56d89540447be7fa3039890523d60 188 SUPERFAMILY SSF50346 99 166 2.88E-16 T 12-10-2018 IPR011033 PRC-barrel-like superfamily AMJ96_CH04207 26c56d89540447be7fa3039890523d60 188 Pfam PF01782 RimM N-terminal domain 10 87 1.8E-20 T 12-10-2018 IPR002676 RimM, N-terminal GO:0006364 AMJ96_CH04207 26c56d89540447be7fa3039890523d60 188 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 8 166 7.2E-43 T 12-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 AMJ96_CH04207 26c56d89540447be7fa3039890523d60 188 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 7 170 23.167 T 12-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 AMJ96_CH04155 2e8f8152a8e060d1ebd9b3bf9b14de7f 235 Gene3D G3DSA:3.40.50.10090 118 235 1.6E-9 T 12-10-2018 AMJ96_CH04155 2e8f8152a8e060d1ebd9b3bf9b14de7f 235 Gene3D G3DSA:3.40.50.10090 1 117 5.4E-18 T 12-10-2018 AMJ96_CH04155 2e8f8152a8e060d1ebd9b3bf9b14de7f 235 Pfam PF02602 Uroporphyrinogen-III synthase HemD 14 232 3.5E-32 T 12-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMJ96_CH04155 2e8f8152a8e060d1ebd9b3bf9b14de7f 235 SUPERFAMILY SSF69618 1 235 4.45E-38 T 12-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AMJ96_CH00877 63b606594bce09701d7e619066a6da18 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 14 194 0.0068 T 12-10-2018 AMJ96_CH00877 63b606594bce09701d7e619066a6da18 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 150 178 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH00877 63b606594bce09701d7e619066a6da18 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 23 255 2.9E-57 T 12-10-2018 AMJ96_CH00877 63b606594bce09701d7e619066a6da18 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 4.3E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00877 63b606594bce09701d7e619066a6da18 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 4.3E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00877 63b606594bce09701d7e619066a6da18 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 4.3E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00877 63b606594bce09701d7e619066a6da18 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 4.3E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00877 63b606594bce09701d7e619066a6da18 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 4.3E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00877 63b606594bce09701d7e619066a6da18 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 4.3E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00877 63b606594bce09701d7e619066a6da18 256 SUPERFAMILY SSF51735 12 255 2.75E-72 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00877 63b606594bce09701d7e619066a6da18 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 3.2E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00877 63b606594bce09701d7e619066a6da18 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 3.2E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00877 63b606594bce09701d7e619066a6da18 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 3.2E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00877 63b606594bce09701d7e619066a6da18 256 Gene3D G3DSA:3.40.50.720 3 256 1.4E-71 T 12-10-2018 AMJ96_CH02064 6d02c2f81e92be24b4b9437df5c7b8bd 100 SUPERFAMILY SSF50199 11 94 8.24E-10 T 12-10-2018 AMJ96_CH02064 6d02c2f81e92be24b4b9437df5c7b8bd 100 Gene3D G3DSA:2.40.50.90 8 86 4.7E-8 T 12-10-2018 IPR035437 SNase-like, OB-fold superfamily AMJ96_CH02064 6d02c2f81e92be24b4b9437df5c7b8bd 100 Pfam PF00565 Staphylococcal nuclease homologue 12 90 7.9E-5 T 12-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 AMJ96_CH00447 be6bc2e68b514e2c7379d2a28b763ddc 295 Hamap MF_00082 Acetylglutamate kinase [argB]. 25 288 48.647 T 12-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMJ96_CH00447 be6bc2e68b514e2c7379d2a28b763ddc 295 Pfam PF00696 Amino acid kinase family 26 272 1.0E-51 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMJ96_CH00447 be6bc2e68b514e2c7379d2a28b763ddc 295 PRINTS PR00474 Glutamate 5-kinase family signature 245 265 6.7E-8 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMJ96_CH00447 be6bc2e68b514e2c7379d2a28b763ddc 295 PRINTS PR00474 Glutamate 5-kinase family signature 195 222 6.7E-8 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMJ96_CH00447 be6bc2e68b514e2c7379d2a28b763ddc 295 PRINTS PR00474 Glutamate 5-kinase family signature 57 71 6.7E-8 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMJ96_CH00447 be6bc2e68b514e2c7379d2a28b763ddc 295 TIGRFAM TIGR00761 argB: acetylglutamate kinase 27 270 4.8E-77 T 12-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMJ96_CH00447 be6bc2e68b514e2c7379d2a28b763ddc 295 PIRSF PIRSF000728 7 295 5.7E-106 T 12-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AMJ96_CH00447 be6bc2e68b514e2c7379d2a28b763ddc 295 Gene3D G3DSA:3.40.1160.10 2 295 3.3E-97 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMJ96_CH00447 be6bc2e68b514e2c7379d2a28b763ddc 295 SUPERFAMILY SSF53633 10 295 7.2E-93 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMJ96_PD00368 349e0c966f6fb4bf51b78ec904656f47 253 SMART SM00382 27 212 3.0E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00368 349e0c966f6fb4bf51b78ec904656f47 253 SUPERFAMILY SSF52540 3 225 5.66E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00368 349e0c966f6fb4bf51b78ec904656f47 253 Gene3D G3DSA:3.40.50.300 1 252 1.2E-66 T 12-10-2018 AMJ96_PD00368 349e0c966f6fb4bf51b78ec904656f47 253 Pfam PF00005 ABC transporter 18 167 6.3E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00283 74b93c94e1a5739e12b2bfc4690c6c85 395 Gene3D G3DSA:1.20.140.10 242 395 3.7E-44 T 12-10-2018 AMJ96_PC00283 74b93c94e1a5739e12b2bfc4690c6c85 395 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 241 387 4.9E-30 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMJ96_PC00283 74b93c94e1a5739e12b2bfc4690c6c85 395 SUPERFAMILY SSF56645 8 239 1.83E-74 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMJ96_PC00283 74b93c94e1a5739e12b2bfc4690c6c85 395 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 346 365 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMJ96_PC00283 74b93c94e1a5739e12b2bfc4690c6c85 395 Gene3D G3DSA:2.40.110.10 136 240 5.8E-38 T 12-10-2018 AMJ96_PC00283 74b93c94e1a5739e12b2bfc4690c6c85 395 SUPERFAMILY SSF47203 243 390 4.67E-42 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMJ96_PC00283 74b93c94e1a5739e12b2bfc4690c6c85 395 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 137 228 2.5E-21 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMJ96_PC00283 74b93c94e1a5739e12b2bfc4690c6c85 395 Gene3D G3DSA:1.10.540.10 7 134 9.0E-38 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMJ96_PC00283 74b93c94e1a5739e12b2bfc4690c6c85 395 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 21 133 6.6E-31 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMJ96_CH00397 e7fa8c04136f083356cb9aec3d51bbc5 164 Gene3D G3DSA:3.40.630.30 13 164 7.6E-33 T 12-10-2018 AMJ96_CH00397 e7fa8c04136f083356cb9aec3d51bbc5 164 SUPERFAMILY SSF55729 10 163 2.06E-25 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH00397 e7fa8c04136f083356cb9aec3d51bbc5 164 Pfam PF00583 Acetyltransferase (GNAT) family 25 136 1.0E-13 T 12-10-2018 IPR000182 GNAT domain AMJ96_PC00149 089a9e9207c898ffce8bfd58cef20242 272 SUPERFAMILY SSF53474 3 271 7.42E-66 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PC00149 089a9e9207c898ffce8bfd58cef20242 272 PRINTS PR00412 Epoxide hydrolase signature 213 229 6.0E-5 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_PC00149 089a9e9207c898ffce8bfd58cef20242 272 PRINTS PR00412 Epoxide hydrolase signature 47 62 6.0E-5 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_PC00149 089a9e9207c898ffce8bfd58cef20242 272 PRINTS PR00412 Epoxide hydrolase signature 27 45 6.0E-5 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_PC00149 089a9e9207c898ffce8bfd58cef20242 272 Pfam PF12146 Serine aminopeptidase, S33 23 255 1.2E-25 T 12-10-2018 IPR022742 Serine aminopeptidase, S33 AMJ96_PC00149 089a9e9207c898ffce8bfd58cef20242 272 Gene3D G3DSA:3.40.50.1820 1 271 2.6E-78 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PC00149 089a9e9207c898ffce8bfd58cef20242 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 47 62 5.1E-15 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PC00149 089a9e9207c898ffce8bfd58cef20242 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 5.1E-15 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PC00149 089a9e9207c898ffce8bfd58cef20242 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 215 229 5.1E-15 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PC00149 089a9e9207c898ffce8bfd58cef20242 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 105 118 5.1E-15 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PC00037 5f0723e05bde971f941273c7f55cc443 381 SUPERFAMILY SSF53756 11 374 2.67E-19 T 12-10-2018 AMJ96_PC00037 5f0723e05bde971f941273c7f55cc443 381 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 217 355 1.2E-10 T 12-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 AMJ96_PC00037 5f0723e05bde971f941273c7f55cc443 381 Gene3D G3DSA:3.40.50.2000 207 357 2.7E-19 T 12-10-2018 AMJ96_CH01877 443b213b61e21b5ae305074acc619462 257 SUPERFAMILY SSF64167 1 250 3.01E-74 T 12-10-2018 AMJ96_CH01877 443b213b61e21b5ae305074acc619462 257 Gene3D G3DSA:3.40.1210.10 1 256 2.1E-90 T 12-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AMJ96_CH01877 443b213b61e21b5ae305074acc619462 257 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 239 2.5E-62 T 12-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AMJ96_CH01877 443b213b61e21b5ae305074acc619462 257 Pfam PF01975 Survival protein SurE 3 185 3.0E-52 T 12-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AMJ96_CH01877 443b213b61e21b5ae305074acc619462 257 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 256 35.047 T 12-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AMJ96_CH01923 a712e3ef6b3de0fc98406a1d01f06c9f 500 SUPERFAMILY SSF89095 320 425 8.72E-35 T 12-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 AMJ96_CH01923 a712e3ef6b3de0fc98406a1d01f06c9f 500 SUPERFAMILY SSF55931 23 319 5.36E-112 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMJ96_CH01923 a712e3ef6b3de0fc98406a1d01f06c9f 500 Gene3D G3DSA:1.10.10.410 437 498 2.9E-19 T 12-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal AMJ96_CH01923 a712e3ef6b3de0fc98406a1d01f06c9f 500 Gene3D G3DSA:1.10.150.380 320 436 7.2E-38 T 12-10-2018 AMJ96_CH01923 a712e3ef6b3de0fc98406a1d01f06c9f 500 Pfam PF02637 GatB domain 351 496 7.5E-50 T 12-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 AMJ96_CH01923 a712e3ef6b3de0fc98406a1d01f06c9f 500 SMART SM00845 351 496 8.1E-78 T 12-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 AMJ96_CH01923 a712e3ef6b3de0fc98406a1d01f06c9f 500 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 21 496 9.7E-164 T 12-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 AMJ96_CH01923 a712e3ef6b3de0fc98406a1d01f06c9f 500 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 168 182 - T 12-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 AMJ96_CH01923 a712e3ef6b3de0fc98406a1d01f06c9f 500 Pfam PF02934 GatB/GatE catalytic domain 24 311 9.2E-113 T 12-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 AMJ96_CH01923 a712e3ef6b3de0fc98406a1d01f06c9f 500 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 21 497 36.961 T 12-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 AMJ96_PA00180 c26912d5e71ab2dad7818aae71641a1d 293 SUPERFAMILY SSF46785 9 116 8.02E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PA00180 c26912d5e71ab2dad7818aae71641a1d 293 Gene3D G3DSA:3.40.190.10 166 259 3.8E-48 T 12-10-2018 AMJ96_PA00180 c26912d5e71ab2dad7818aae71641a1d 293 SUPERFAMILY SSF53850 93 289 8.87E-29 T 12-10-2018 AMJ96_PA00180 c26912d5e71ab2dad7818aae71641a1d 293 Gene3D G3DSA:1.10.10.10 8 94 2.6E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PA00180 c26912d5e71ab2dad7818aae71641a1d 293 Gene3D G3DSA:3.40.190.10 100 266 3.8E-48 T 12-10-2018 AMJ96_PA00180 c26912d5e71ab2dad7818aae71641a1d 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 5.1E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PA00180 c26912d5e71ab2dad7818aae71641a1d 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 5.1E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PA00180 c26912d5e71ab2dad7818aae71641a1d 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 5.1E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PA00180 c26912d5e71ab2dad7818aae71641a1d 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 68 2.0E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PA00180 c26912d5e71ab2dad7818aae71641a1d 293 Pfam PF03466 LysR substrate binding domain 93 285 1.0E-30 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH00630 45a93d1550bc8345267d419067a3c373 450 SUPERFAMILY SSF50475 19 102 1.37E-10 T 12-10-2018 AMJ96_CH00630 45a93d1550bc8345267d419067a3c373 450 Gene3D G3DSA:3.30.450.40 148 320 5.3E-22 T 12-10-2018 IPR029016 GAF-like domain superfamily AMJ96_CH00630 45a93d1550bc8345267d419067a3c373 450 SMART SM00065 163 324 4.3E-8 T 12-10-2018 IPR003018 GAF domain GO:0005515 AMJ96_CH00630 45a93d1550bc8345267d419067a3c373 450 Pfam PF13185 GAF domain 162 314 2.8E-12 T 12-10-2018 IPR003018 GAF domain GO:0005515 AMJ96_CH00630 45a93d1550bc8345267d419067a3c373 450 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 19 78 1.1E-6 T 12-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMJ96_CH00630 45a93d1550bc8345267d419067a3c373 450 Gene3D G3DSA:2.30.110.10 10 131 3.6E-21 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMJ96_CH00630 45a93d1550bc8345267d419067a3c373 450 SUPERFAMILY SSF55781 151 315 4.71E-20 T 12-10-2018 AMJ96_CH00084 414aa286a3dca85da45c142314dbb6a2 428 Pfam PF13416 Bacterial extracellular solute-binding protein 55 336 4.6E-24 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH00084 414aa286a3dca85da45c142314dbb6a2 428 SUPERFAMILY SSF53850 29 424 1.96E-51 T 12-10-2018 AMJ96_CH00084 414aa286a3dca85da45c142314dbb6a2 428 Gene3D G3DSA:3.40.190.10 34 372 2.5E-121 T 12-10-2018 AMJ96_CH00084 414aa286a3dca85da45c142314dbb6a2 428 Gene3D G3DSA:3.40.190.10 143 416 2.5E-121 T 12-10-2018 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Pfam PF01442 Apolipoprotein A1/A4/E domain 844 1024 6.5E-5 T 12-10-2018 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-8963901 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Pfam PF01442 Apolipoprotein A1/A4/E domain 1799 1988 2.3E-8 T 12-10-2018 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-8963901 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Pfam PF01442 Apolipoprotein A1/A4/E domain 1410 1565 2.5E-5 T 12-10-2018 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-8963901 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Pfam PF01442 Apolipoprotein A1/A4/E domain 280 453 2.3E-5 T 12-10-2018 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-8963901 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Pfam PF01442 Apolipoprotein A1/A4/E domain 1941 2076 4.4E-6 T 12-10-2018 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-8963901 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Pfam PF01442 Apolipoprotein A1/A4/E domain 429 579 2.7E-5 T 12-10-2018 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-8963901 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Pfam PF01442 Apolipoprotein A1/A4/E domain 970 1130 5.4E-5 T 12-10-2018 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-8963901 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Pfam PF01442 Apolipoprotein A1/A4/E domain 1527 1676 1.0E-4 T 12-10-2018 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-8963901 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Pfam PF01442 Apolipoprotein A1/A4/E domain 555 739 1.4E-14 T 12-10-2018 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-8963901 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Pfam PF01442 Apolipoprotein A1/A4/E domain 1119 1284 1.2E-5 T 12-10-2018 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-8963901 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Pfam PF01442 Apolipoprotein A1/A4/E domain 1205 1381 4.5E-10 T 12-10-2018 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-8963901 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Pfam PF01442 Apolipoprotein A1/A4/E domain 200 301 1.3 T 12-10-2018 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-8963901 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Pfam PF01442 Apolipoprotein A1/A4/E domain 676 871 8.2E-6 T 12-10-2018 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-8963901 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Pfam PF01442 Apolipoprotein A1/A4/E domain 1569 1764 2.7E-5 T 12-10-2018 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-8963901 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Pfam PF01442 Apolipoprotein A1/A4/E domain 1316 1499 4.7E-9 T 12-10-2018 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-8963901 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Pfam PF01442 Apolipoprotein A1/A4/E domain 519 670 7.4E-14 T 12-10-2018 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-8963901 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Pfam PF01442 Apolipoprotein A1/A4/E domain 310 493 8.0E-6 T 12-10-2018 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: R-HSA-8963901 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 SUPERFAMILY SSF58113 1208 1377 1.24E-5 T 12-10-2018 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 SUPERFAMILY SSF58113 1880 2041 3.53E-5 T 12-10-2018 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 ProDom PD936484 POLYPROTEIN GLYCOPROTEIN M G2 TRANSMEMBRANE NONSTRUCTURAL MEMBRANE CONTAINS: PRECURSOR SIGNAL 689 1089 6.0E-9 T 12-10-2018 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 SUPERFAMILY SSF58113 528 711 3.01E-9 T 12-10-2018 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Gene3D G3DSA:1.20.120.20 1225 1360 3.9E-10 T 12-10-2018 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Gene3D G3DSA:1.20.120.20 1449 1596 2.5E-9 T 12-10-2018 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Gene3D G3DSA:1.20.120.20 679 828 5.3E-9 T 12-10-2018 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Gene3D G3DSA:1.20.120.20 1878 2031 7.1E-9 T 12-10-2018 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Gene3D G3DSA:1.20.120.20 539 678 6.3E-14 T 12-10-2018 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Gene3D G3DSA:1.20.120.20 1650 1785 1.2E-8 T 12-10-2018 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Gene3D G3DSA:1.20.120.20 262 416 2.4E-12 T 12-10-2018 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 Gene3D G3DSA:1.20.120.20 952 1097 1.4E-8 T 12-10-2018 AMJ96_CH02405 04528fd75f58ec27c2b49662403b173f 2324 SUPERFAMILY SSF58113 352 531 9.29E-5 T 12-10-2018 AMJ96_CH02123 dcd96476a073374b4261f63d589802d7 354 SUPERFAMILY SSF53822 75 340 1.88E-47 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH02123 dcd96476a073374b4261f63d589802d7 354 Gene3D G3DSA:3.40.50.2300 74 330 4.9E-53 T 12-10-2018 AMJ96_CH02123 dcd96476a073374b4261f63d589802d7 354 Gene3D G3DSA:3.40.50.2300 168 335 4.9E-53 T 12-10-2018 AMJ96_CH02123 dcd96476a073374b4261f63d589802d7 354 Pfam PF13377 Periplasmic binding protein-like domain 176 338 2.1E-33 T 12-10-2018 AMJ96_CH02123 dcd96476a073374b4261f63d589802d7 354 SUPERFAMILY SSF47413 10 57 2.6E-9 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH02123 dcd96476a073374b4261f63d589802d7 354 SMART SM00354 10 74 7.2E-6 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH02123 dcd96476a073374b4261f63d589802d7 354 Pfam PF00356 Bacterial regulatory proteins, lacI family 13 55 4.5E-9 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH02123 dcd96476a073374b4261f63d589802d7 354 Gene3D G3DSA:1.10.260.40 3 54 9.3E-13 T 12-10-2018 AMJ96_CH03094 aa9d400125aac1fca9715915e0ce6364 313 Pfam PF13676 TIR domain 6 112 8.5E-22 T 12-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 AMJ96_CH03094 aa9d400125aac1fca9715915e0ce6364 313 SUPERFAMILY SSF52200 5 142 5.49E-22 T 12-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily AMJ96_CH03094 aa9d400125aac1fca9715915e0ce6364 313 SMART SM00255 2 145 1.1E-7 T 12-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 AMJ96_CH03094 aa9d400125aac1fca9715915e0ce6364 313 Gene3D G3DSA:3.40.50.10140 2 136 1.4E-20 T 12-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily AMJ96_CH03407 99615ad27d09c8cf39ef8c3458ea93f2 349 Gene3D G3DSA:2.40.50.820 64 104 4.9E-25 T 12-10-2018 AMJ96_CH03407 99615ad27d09c8cf39ef8c3458ea93f2 349 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 4 328 1.6E-68 T 12-10-2018 IPR003776 YcaO-like domain AMJ96_CH03407 99615ad27d09c8cf39ef8c3458ea93f2 349 Gene3D G3DSA:3.30.160.660 143 280 4.9E-25 T 12-10-2018 AMJ96_CH03407 99615ad27d09c8cf39ef8c3458ea93f2 349 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 2 249 2.3E-39 T 12-10-2018 IPR003776 YcaO-like domain AMJ96_CH03407 99615ad27d09c8cf39ef8c3458ea93f2 349 Gene3D G3DSA:1.10.490.140 105 328 4.9E-25 T 12-10-2018 AMJ96_PC00312 c5ffd26e607b91155f97790619232280 285 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 191 210 3.2E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00312 c5ffd26e607b91155f97790619232280 285 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 3.2E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00312 c5ffd26e607b91155f97790619232280 285 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 119 130 3.2E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00312 c5ffd26e607b91155f97790619232280 285 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 178 206 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_PC00312 c5ffd26e607b91155f97790619232280 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 229 2.3E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00312 c5ffd26e607b91155f97790619232280 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 210 2.3E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00312 c5ffd26e607b91155f97790619232280 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 246 266 2.3E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00312 c5ffd26e607b91155f97790619232280 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 181 2.3E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00312 c5ffd26e607b91155f97790619232280 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 44 61 2.3E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00312 c5ffd26e607b91155f97790619232280 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 130 2.3E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00312 c5ffd26e607b91155f97790619232280 285 Gene3D G3DSA:3.40.50.720 1 283 2.4E-87 T 12-10-2018 AMJ96_PC00312 c5ffd26e607b91155f97790619232280 285 SUPERFAMILY SSF51735 41 282 4.29E-78 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00312 c5ffd26e607b91155f97790619232280 285 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 52 281 3.0E-60 T 12-10-2018 AMJ96_CH01445 91ff9db276283de81ce04263cf0b14c8 293 Gene3D G3DSA:3.30.70.100 179 269 7.2E-20 T 12-10-2018 AMJ96_CH01445 91ff9db276283de81ce04263cf0b14c8 293 SUPERFAMILY SSF82689 181 265 1.44E-21 T 12-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AMJ96_CH01445 91ff9db276283de81ce04263cf0b14c8 293 SUPERFAMILY SSF50182 114 179 4.58E-17 T 12-10-2018 IPR010920 LSM domain superfamily AMJ96_CH01445 91ff9db276283de81ce04263cf0b14c8 293 Pfam PF00924 Mechanosensitive ion channel 71 265 2.5E-54 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMJ96_CH01445 91ff9db276283de81ce04263cf0b14c8 293 SUPERFAMILY SSF82861 27 112 2.75E-18 T 12-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AMJ96_CH01445 91ff9db276283de81ce04263cf0b14c8 293 Gene3D G3DSA:2.30.30.60 129 178 1.4E-16 T 12-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily AMJ96_CH02605 9f336708fa5b6af698094a17d4fee032 176 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 9 124 1.0E-14 T 12-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMJ96_CH02605 9f336708fa5b6af698094a17d4fee032 176 SUPERFAMILY SSF52788 7 145 1.57E-37 T 12-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily AMJ96_CH02605 9f336708fa5b6af698094a17d4fee032 176 Gene3D G3DSA:3.40.50.2300 6 145 4.3E-37 T 12-10-2018 AMJ96_CH02605 9f336708fa5b6af698094a17d4fee032 176 SMART SM00226 7 145 3.9E-25 T 12-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMJ96_CH04325 7360fa8f396d587260923bb8516efada 192 Pfam PF01467 Cytidylyltransferase-like 5 184 2.2E-25 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMJ96_CH04325 7360fa8f396d587260923bb8516efada 192 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 5 186 4.9E-42 T 12-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AMJ96_CH04325 7360fa8f396d587260923bb8516efada 192 Gene3D G3DSA:3.40.50.620 1 190 2.3E-41 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH04325 7360fa8f396d587260923bb8516efada 192 SUPERFAMILY SSF52374 1 184 1.0E-42 T 12-10-2018 AMJ96_CH04325 7360fa8f396d587260923bb8516efada 192 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 1 177 20.759 T 12-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AMJ96_CH03253 882f77233ae3d082dda14c41bbd57427 526 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 73 95 - T 12-10-2018 IPR023765 Solute-binding protein family 5, conserved site AMJ96_CH03253 882f77233ae3d082dda14c41bbd57427 526 Gene3D G3DSA:3.90.76.10 57 180 1.2E-179 T 12-10-2018 AMJ96_CH03253 882f77233ae3d082dda14c41bbd57427 526 Gene3D G3DSA:3.40.190.10 27 509 1.2E-179 T 12-10-2018 AMJ96_CH03253 882f77233ae3d082dda14c41bbd57427 526 Gene3D G3DSA:3.10.105.10 282 497 1.2E-179 T 12-10-2018 AMJ96_CH03253 882f77233ae3d082dda14c41bbd57427 526 SUPERFAMILY SSF53850 21 515 3.37E-143 T 12-10-2018 AMJ96_CH03253 882f77233ae3d082dda14c41bbd57427 526 PIRSF PIRSF002741 20 525 1.6E-116 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_CH03253 882f77233ae3d082dda14c41bbd57427 526 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 68 448 4.2E-88 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_CH02456 f9d053290132fd2a5ffb9ceb16071737 250 Pfam PF00005 ABC transporter 27 158 2.9E-23 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02456 f9d053290132fd2a5ffb9ceb16071737 250 SUPERFAMILY SSF52540 4 220 8.34E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02456 f9d053290132fd2a5ffb9ceb16071737 250 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02456 f9d053290132fd2a5ffb9ceb16071737 250 SMART SM00382 29 207 9.3E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02456 f9d053290132fd2a5ffb9ceb16071737 250 Gene3D G3DSA:3.40.50.300 4 246 1.2E-53 T 12-10-2018 AMJ96_CH02075 bbb6029f5f3ac82e08a711d84af3673b 522 SMART SM00028 425 458 55.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02075 bbb6029f5f3ac82e08a711d84af3673b 522 SMART SM00028 459 492 12.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02075 bbb6029f5f3ac82e08a711d84af3673b 522 SMART SM00028 388 421 100.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02075 bbb6029f5f3ac82e08a711d84af3673b 522 Gene3D G3DSA:1.25.40.10 242 519 6.1E-21 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02075 bbb6029f5f3ac82e08a711d84af3673b 522 SUPERFAMILY SSF48452 295 492 4.74E-18 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02075 bbb6029f5f3ac82e08a711d84af3673b 522 SMART SM00862 29 103 2.2E-11 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH02075 bbb6029f5f3ac82e08a711d84af3673b 522 Pfam PF00486 Transcriptional regulatory protein, C terminal 30 102 1.1E-11 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH02075 bbb6029f5f3ac82e08a711d84af3673b 522 SUPERFAMILY SSF46894 10 104 1.36E-13 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH02075 bbb6029f5f3ac82e08a711d84af3673b 522 Gene3D G3DSA:1.10.10.10 9 109 1.1E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00036 687ee3969b51a6ac9ddf6db097dfa232 904 Gene3D G3DSA:3.40.50.300 366 509 1.1E-21 T 12-10-2018 AMJ96_PC00036 687ee3969b51a6ac9ddf6db097dfa232 904 Pfam PF00664 ABC transporter transmembrane region 87 312 6.3E-15 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_PC00036 687ee3969b51a6ac9ddf6db097dfa232 904 Gene3D G3DSA:1.20.1560.10 5 347 9.4E-35 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_PC00036 687ee3969b51a6ac9ddf6db097dfa232 904 SUPERFAMILY SSF90123 7 349 1.01E-39 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_PC00036 687ee3969b51a6ac9ddf6db097dfa232 904 SUPERFAMILY SSF52540 372 896 8.04E-26 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00036 687ee3969b51a6ac9ddf6db097dfa232 904 Pfam PF00005 ABC transporter 387 486 4.4E-11 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00036 687ee3969b51a6ac9ddf6db097dfa232 904 Gene3D G3DSA:3.40.50.300 704 903 1.1E-20 T 12-10-2018 AMJ96_PD00495 03b24f76aa96501b071a226208263d71 295 SUPERFAMILY SSF161098 96 279 3.01E-41 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00495 03b24f76aa96501b071a226208263d71 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 284 2.6E-28 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00495 03b24f76aa96501b071a226208263d71 295 Gene3D G3DSA:1.10.3720.10 93 288 1.1E-37 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03801 449e330e279862c51940dd54ab9f7772 344 TIGRFAM TIGR00109 hemH: ferrochelatase 16 340 1.2E-88 T 12-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AMJ96_CH03801 449e330e279862c51940dd54ab9f7772 344 Gene3D G3DSA:3.40.50.1400 182 321 7.3E-96 T 12-10-2018 AMJ96_CH03801 449e330e279862c51940dd54ab9f7772 344 SUPERFAMILY SSF53800 17 344 1.96E-103 T 12-10-2018 AMJ96_CH03801 449e330e279862c51940dd54ab9f7772 344 ProSitePatterns PS00534 Ferrochelatase signature. 209 228 - T 12-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AMJ96_CH03801 449e330e279862c51940dd54ab9f7772 344 Pfam PF00762 Ferrochelatase 19 339 1.0E-109 T 12-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AMJ96_CH03801 449e330e279862c51940dd54ab9f7772 344 Gene3D G3DSA:3.40.50.1400 19 341 7.3E-96 T 12-10-2018 AMJ96_CH03801 449e330e279862c51940dd54ab9f7772 344 Hamap MF_00323 Ferrochelatase [hemH]. 18 340 37.155 T 12-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AMJ96_CH03048 874ee31c1de37ab1ce271eb70461feb0 400 Gene3D G3DSA:3.30.1540.10 238 329 2.6E-143 T 12-10-2018 AMJ96_CH03048 874ee31c1de37ab1ce271eb70461feb0 400 Gene3D G3DSA:3.40.50.10540 10 366 2.6E-143 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily AMJ96_CH03048 874ee31c1de37ab1ce271eb70461feb0 400 SUPERFAMILY SSF89796 9 394 5.76E-139 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily AMJ96_CH03048 874ee31c1de37ab1ce271eb70461feb0 400 Pfam PF02515 CoA-transferase family III 11 383 1.0E-129 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 AMJ96_CH03297 56763b8856cf11effd432300cd420e86 166 Pfam PF09349 OHCU decarboxylase 2 158 9.5E-39 T 12-10-2018 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 AMJ96_CH03297 56763b8856cf11effd432300cd420e86 166 TIGRFAM TIGR03164 UHCUDC: OHCU decarboxylase 3 161 2.9E-60 T 12-10-2018 IPR017580 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1 GO:0019428 KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 AMJ96_CH03297 56763b8856cf11effd432300cd420e86 166 SUPERFAMILY SSF158694 2 163 1.7E-51 T 12-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 AMJ96_CH03297 56763b8856cf11effd432300cd420e86 166 Gene3D G3DSA:1.10.3330.10 1 165 8.1E-61 T 12-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 AMJ96_PA00034 2551edfe17cb2db13efaa3ab8e404880 359 Pfam PF08402 TOBE domain 281 358 1.7E-16 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_PA00034 2551edfe17cb2db13efaa3ab8e404880 359 Gene3D G3DSA:2.40.50.140 300 350 5.8E-6 T 12-10-2018 AMJ96_PA00034 2551edfe17cb2db13efaa3ab8e404880 359 Gene3D G3DSA:2.40.50.100 250 358 5.8E-6 T 12-10-2018 AMJ96_PA00034 2551edfe17cb2db13efaa3ab8e404880 359 SUPERFAMILY SSF52540 6 244 1.64E-84 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00034 2551edfe17cb2db13efaa3ab8e404880 359 SMART SM00382 30 213 1.0E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00034 2551edfe17cb2db13efaa3ab8e404880 359 Pfam PF00005 ABC transporter 22 163 6.1E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00034 2551edfe17cb2db13efaa3ab8e404880 359 Gene3D G3DSA:3.40.50.300 2 240 3.1E-75 T 12-10-2018 AMJ96_PA00034 2551edfe17cb2db13efaa3ab8e404880 359 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PA00034 2551edfe17cb2db13efaa3ab8e404880 359 SUPERFAMILY SSF50331 241 358 8.5E-14 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH00169 8851b1712c0b50cf9eee58c02870b4a3 235 TIGRFAM TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL 6 226 2.9E-99 T 12-10-2018 IPR012701 Phosphonate C-P lyase system, PhnL KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_CH00169 8851b1712c0b50cf9eee58c02870b4a3 235 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00169 8851b1712c0b50cf9eee58c02870b4a3 235 Pfam PF00005 ABC transporter 28 181 9.1E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00169 8851b1712c0b50cf9eee58c02870b4a3 235 SUPERFAMILY SSF52540 8 225 3.12E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00169 8851b1712c0b50cf9eee58c02870b4a3 235 Gene3D G3DSA:3.40.50.300 5 231 2.4E-46 T 12-10-2018 AMJ96_CH00169 8851b1712c0b50cf9eee58c02870b4a3 235 SMART SM00382 36 229 5.8E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01643 2d022ba7c2fc66cff468a71fa2e66388 347 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 225 238 - T 12-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01643 2d022ba7c2fc66cff468a71fa2e66388 347 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 11 344 24.167 T 12-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01643 2d022ba7c2fc66cff468a71fa2e66388 347 Pfam PF00146 NADH dehydrogenase 20 337 7.9E-122 T 12-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH02128 f8d58ab6882c4dde16962f11929fb386 359 Gene3D G3DSA:2.40.50.940 222 352 3.3E-34 T 12-10-2018 AMJ96_CH02128 f8d58ab6882c4dde16962f11929fb386 359 Pfam PF08402 TOBE domain 280 351 2.6E-10 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_CH02128 f8d58ab6882c4dde16962f11929fb386 359 SUPERFAMILY SSF50331 237 358 6.56E-26 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH02128 f8d58ab6882c4dde16962f11929fb386 359 Gene3D G3DSA:3.40.50.300 4 221 1.2E-68 T 12-10-2018 AMJ96_CH02128 f8d58ab6882c4dde16962f11929fb386 359 Pfam PF00005 ABC transporter 20 161 2.7E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02128 f8d58ab6882c4dde16962f11929fb386 359 Gene3D G3DSA:2.40.50.140 287 343 3.3E-34 T 12-10-2018 AMJ96_CH02128 f8d58ab6882c4dde16962f11929fb386 359 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02128 f8d58ab6882c4dde16962f11929fb386 359 SUPERFAMILY SSF52540 4 243 4.79E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02128 f8d58ab6882c4dde16962f11929fb386 359 SMART SM00382 28 219 4.8E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04356 80d5045dcfc969ae89315a95b4c76bb7 274 Gene3D G3DSA:1.10.8.350 45 210 3.4E-51 T 12-10-2018 AMJ96_CH04356 80d5045dcfc969ae89315a95b4c76bb7 274 SUPERFAMILY SSF53955 26 273 2.67E-72 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily AMJ96_CH04356 80d5045dcfc969ae89315a95b4c76bb7 274 Gene3D G3DSA:1.10.530.10 78 238 3.4E-51 T 12-10-2018 AMJ96_CH04356 80d5045dcfc969ae89315a95b4c76bb7 274 Pfam PF13406 Transglycosylase SLT domain 36 239 1.0E-70 T 12-10-2018 IPR031304 Transglycosylase SLT domain 2 AMJ96_CH04268 19f667d9c35b9e34e029563845b84604 393 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 391 1.7E-144 T 12-10-2018 IPR002155 Thiolase GO:0016747 AMJ96_CH04268 19f667d9c35b9e34e029563845b84604 393 Pfam PF00108 Thiolase, N-terminal domain 6 262 1.5E-106 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AMJ96_CH04268 19f667d9c35b9e34e029563845b84604 393 Gene3D G3DSA:3.40.47.10 7 276 7.9E-155 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH04268 19f667d9c35b9e34e029563845b84604 393 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 AMJ96_CH04268 19f667d9c35b9e34e029563845b84604 393 Gene3D G3DSA:3.40.47.10 128 389 7.9E-155 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH04268 19f667d9c35b9e34e029563845b84604 393 Pfam PF02803 Thiolase, C-terminal domain 271 391 2.4E-52 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMJ96_CH04268 19f667d9c35b9e34e029563845b84604 393 SUPERFAMILY SSF53901 6 269 9.51E-85 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH04268 19f667d9c35b9e34e029563845b84604 393 PIRSF PIRSF000429 1 393 8.8E-127 T 12-10-2018 IPR002155 Thiolase GO:0016747 AMJ96_CH04268 19f667d9c35b9e34e029563845b84604 393 SUPERFAMILY SSF53901 271 391 1.69E-46 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH04268 19f667d9c35b9e34e029563845b84604 393 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 AMJ96_CH04268 19f667d9c35b9e34e029563845b84604 393 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 AMJ96_CH02391 87727d65a5f121daf33b868d0e4304bb 338 Pfam PF04347 Flagellar biosynthesis protein, FliO 43 109 4.7E-10 T 12-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 AMJ96_CH00264 8958ccb92c6f5a00dee04c7b0fc2a110 183 Gene3D G3DSA:1.10.10.10 75 119 1.2E-7 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00264 8958ccb92c6f5a00dee04c7b0fc2a110 183 Pfam PF02631 RecX family 62 169 1.9E-15 T 12-10-2018 IPR003783 Regulatory protein RecX GO:0006282 AMJ96_CH01368 a32df5056a455f15539eeddfa7dd7637 500 SUPERFAMILY SSF53167 26 500 1.44E-151 T 12-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 AMJ96_CH01368 a32df5056a455f15539eeddfa7dd7637 500 Gene3D G3DSA:3.30.1730.10 22 187 7.7E-50 T 12-10-2018 IPR037109 AMP nucleoside phosphorylase, N-terminal domain superfamily KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 AMJ96_CH01368 a32df5056a455f15539eeddfa7dd7637 500 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 29 183 1.7E-52 T 12-10-2018 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 AMJ96_CH01368 a32df5056a455f15539eeddfa7dd7637 500 Gene3D G3DSA:3.40.50.1580 189 500 5.5E-97 T 12-10-2018 AMJ96_CH01368 a32df5056a455f15539eeddfa7dd7637 500 Pfam PF01048 Phosphorylase superfamily 285 447 3.0E-11 T 12-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AMJ96_CH01368 a32df5056a455f15539eeddfa7dd7637 500 Hamap MF_01932 AMP nucleosidase [amn]. 20 500 61.937 T 12-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 AMJ96_CH01368 a32df5056a455f15539eeddfa7dd7637 500 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 28 500 7.8E-231 T 12-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 AMJ96_CH01794 b185c8ed5f66a7311dcf611d88b9ea35 341 SUPERFAMILY SSF56529 76 333 7.33E-57 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMJ96_CH01794 b185c8ed5f66a7311dcf611d88b9ea35 341 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 81 332 6.5E-39 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 AMJ96_CH01794 b185c8ed5f66a7311dcf611d88b9ea35 341 Gene3D G3DSA:3.90.850.10 1 338 1.3E-146 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMJ96_CH01699 8664fe4fb0a62c0b2bf4d2d755813f36 176 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 5 176 1.6E-67 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMJ96_CH01699 8664fe4fb0a62c0b2bf4d2d755813f36 176 SMART SM00738 2 110 2.3E-48 T 12-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AMJ96_CH01699 8664fe4fb0a62c0b2bf4d2d755813f36 176 PRINTS PR00338 Transcription termination factor NUSG signature 57 69 1.2E-19 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMJ96_CH01699 8664fe4fb0a62c0b2bf4d2d755813f36 176 PRINTS PR00338 Transcription termination factor NUSG signature 134 149 1.2E-19 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMJ96_CH01699 8664fe4fb0a62c0b2bf4d2d755813f36 176 PRINTS PR00338 Transcription termination factor NUSG signature 152 168 1.2E-19 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMJ96_CH01699 8664fe4fb0a62c0b2bf4d2d755813f36 176 ProSitePatterns PS01014 Transcription termination factor nusG signature. 159 168 - T 12-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site AMJ96_CH01699 8664fe4fb0a62c0b2bf4d2d755813f36 176 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 2 176 25.092 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AMJ96_CH01699 8664fe4fb0a62c0b2bf4d2d755813f36 176 SUPERFAMILY SSF82679 4 112 2.49E-38 T 12-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AMJ96_CH01699 8664fe4fb0a62c0b2bf4d2d755813f36 176 Pfam PF00467 KOW motif 126 157 8.6E-6 T 12-10-2018 IPR005824 KOW AMJ96_CH01699 8664fe4fb0a62c0b2bf4d2d755813f36 176 SUPERFAMILY SSF50104 120 176 1.2E-18 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMJ96_CH01699 8664fe4fb0a62c0b2bf4d2d755813f36 176 SMART SM00739 122 149 3.8E-5 T 12-10-2018 IPR005824 KOW AMJ96_CH01699 8664fe4fb0a62c0b2bf4d2d755813f36 176 Gene3D G3DSA:3.30.70.940 1 116 1.9E-42 T 12-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AMJ96_CH01699 8664fe4fb0a62c0b2bf4d2d755813f36 176 Pfam PF02357 Transcription termination factor nusG 4 107 1.4E-25 T 12-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AMJ96_CH01699 8664fe4fb0a62c0b2bf4d2d755813f36 176 Gene3D G3DSA:2.30.30.30 117 176 9.4E-27 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 AMJ96_CH00880 1f36d6e3ba76a98a167233c087b5122b 388 SUPERFAMILY SSF117916 1 84 2.58E-19 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMJ96_CH00880 1f36d6e3ba76a98a167233c087b5122b 388 Pfam PF01883 Iron-sulfur cluster assembly protein 6 75 2.0E-16 T 12-10-2018 IPR002744 MIP18 family-like AMJ96_CH00880 1f36d6e3ba76a98a167233c087b5122b 388 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 128 370 9.0E-100 T 12-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 AMJ96_CH00880 1f36d6e3ba76a98a167233c087b5122b 388 Gene3D G3DSA:3.30.300.130 1 94 2.4E-12 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMJ96_CH00880 1f36d6e3ba76a98a167233c087b5122b 388 Gene3D G3DSA:3.40.50.300 121 364 1.2E-81 T 12-10-2018 AMJ96_CH00880 1f36d6e3ba76a98a167233c087b5122b 388 Hamap MF_02040 Iron-sulfur cluster carrier protein. 123 371 36.57 T 12-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein AMJ96_CH00880 1f36d6e3ba76a98a167233c087b5122b 388 ProSitePatterns PS01215 Mrp family signature. 234 250 - T 12-10-2018 IPR000808 Mrp, conserved site GO:0005524 AMJ96_CH00880 1f36d6e3ba76a98a167233c087b5122b 388 SUPERFAMILY SSF52540 131 375 9.0E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00019 46b9b242475ba5f8dec8fca0d230a96a 153 Gene3D G3DSA:2.60.120.10 2 150 5.1E-37 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PD00019 46b9b242475ba5f8dec8fca0d230a96a 153 Pfam PF07883 Cupin domain 37 102 1.0E-15 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_PD00019 46b9b242475ba5f8dec8fca0d230a96a 153 SUPERFAMILY SSF51182 17 122 9.7E-23 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH03589 c773621e2b11f7d4c793b9ff52aa2455 401 Gene3D G3DSA:3.30.420.40 224 353 8.6E-21 T 12-10-2018 AMJ96_CH03589 c773621e2b11f7d4c793b9ff52aa2455 401 Gene3D G3DSA:3.30.420.40 86 223 2.8E-20 T 12-10-2018 AMJ96_CH03589 c773621e2b11f7d4c793b9ff52aa2455 401 Gene3D G3DSA:1.10.10.10 8 84 5.8E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03589 c773621e2b11f7d4c793b9ff52aa2455 401 SUPERFAMILY SSF46785 20 79 3.7E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03589 c773621e2b11f7d4c793b9ff52aa2455 401 Pfam PF12802 MarR family 28 75 5.7E-7 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH03589 c773621e2b11f7d4c793b9ff52aa2455 401 SUPERFAMILY SSF53067 90 385 4.49E-38 T 12-10-2018 AMJ96_CH03589 c773621e2b11f7d4c793b9ff52aa2455 401 Pfam PF00480 ROK family 146 356 1.0E-25 T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AMJ96_CH00689 3c9fd7be10c2bc881c783b68bd297400 359 Gene3D G3DSA:3.40.1690.10 219 359 7.4E-51 T 12-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal AMJ96_CH00689 3c9fd7be10c2bc881c783b68bd297400 359 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 7 354 1.2E-117 T 12-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 AMJ96_CH00689 3c9fd7be10c2bc881c783b68bd297400 359 Pfam PF01312 FlhB HrpN YscU SpaS Family 8 348 1.1E-111 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMJ96_CH00689 3c9fd7be10c2bc881c783b68bd297400 359 SUPERFAMILY SSF160544 245 351 6.54E-37 T 12-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal AMJ96_CH00689 3c9fd7be10c2bc881c783b68bd297400 359 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 229 246 3.0E-37 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMJ96_CH00689 3c9fd7be10c2bc881c783b68bd297400 359 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 303 324 3.0E-37 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMJ96_CH00689 3c9fd7be10c2bc881c783b68bd297400 359 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 3.0E-37 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMJ96_CH00689 3c9fd7be10c2bc881c783b68bd297400 359 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 209 227 3.0E-37 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMJ96_CH00689 3c9fd7be10c2bc881c783b68bd297400 359 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 273 288 3.0E-37 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AMJ96_CH03753 ceea3b1de535e83ad9fcaa3708b24ca0 330 Gene3D G3DSA:3.40.190.10 132 255 4.7E-118 T 12-10-2018 AMJ96_CH03753 ceea3b1de535e83ad9fcaa3708b24ca0 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 326 3.0E-94 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMJ96_CH03753 ceea3b1de535e83ad9fcaa3708b24ca0 330 PIRSF PIRSF017082 2 329 1.3E-85 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMJ96_CH03753 ceea3b1de535e83ad9fcaa3708b24ca0 330 Gene3D G3DSA:3.40.190.150 34 320 4.7E-118 T 12-10-2018 AMJ96_CH03753 ceea3b1de535e83ad9fcaa3708b24ca0 330 SUPERFAMILY SSF53850 117 295 6.51E-12 T 12-10-2018 AMJ96_CH00804 1928f6674e91c4a20bb24f4348d0c019 497 SUPERFAMILY SSF53448 1 255 1.69E-37 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00804 1928f6674e91c4a20bb24f4348d0c019 497 Gene3D G3DSA:2.160.10.10 287 484 1.2E-37 T 12-10-2018 AMJ96_CH00804 1928f6674e91c4a20bb24f4348d0c019 497 Gene3D G3DSA:3.90.550.10 1 225 6.0E-32 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00804 1928f6674e91c4a20bb24f4348d0c019 497 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 422 455 4.4E-10 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH00804 1928f6674e91c4a20bb24f4348d0c019 497 SUPERFAMILY SSF51161 359 478 3.05E-26 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily AMJ96_CH00804 1928f6674e91c4a20bb24f4348d0c019 497 Pfam PF00535 Glycosyl transferase family 2 5 127 1.2E-20 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_CH01600 5b1fbf1babd0929b287156127328a52f 320 Gene3D G3DSA:3.40.800.10 3 316 2.2E-100 T 12-10-2018 AMJ96_CH01600 5b1fbf1babd0929b287156127328a52f 320 PIRSF PIRSF036979 23 313 2.7E-80 T 12-10-2018 IPR006035 Ureohydrolase GO:0046872 AMJ96_CH01600 5b1fbf1babd0929b287156127328a52f 320 ProSitePatterns PS01053 Arginase family signature. 237 258 - T 12-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 AMJ96_CH01600 5b1fbf1babd0929b287156127328a52f 320 SUPERFAMILY SSF52768 22 312 1.53E-87 T 12-10-2018 IPR023696 Ureohydrolase domain superfamily AMJ96_CH01600 5b1fbf1babd0929b287156127328a52f 320 Pfam PF00491 Arginase family 43 306 5.3E-82 T 12-10-2018 IPR006035 Ureohydrolase GO:0046872 AMJ96_CH01600 5b1fbf1babd0929b287156127328a52f 320 TIGRFAM TIGR01230 agmatinase: agmatinase 39 307 4.5E-68 T 12-10-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 AMJ96_CH03446 03b249cc0422a4dfacd08b43609ae38b 475 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 5 473 3.5E-197 T 12-10-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 AMJ96_CH03446 03b249cc0422a4dfacd08b43609ae38b 475 Pfam PF01050 Mannose-6-phosphate isomerase 319 470 8.6E-64 T 12-10-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 AMJ96_CH03446 03b249cc0422a4dfacd08b43609ae38b 475 Gene3D G3DSA:3.90.550.10 6 353 2.7E-105 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03446 03b249cc0422a4dfacd08b43609ae38b 475 Pfam PF00483 Nucleotidyl transferase 7 288 2.8E-59 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AMJ96_CH03446 03b249cc0422a4dfacd08b43609ae38b 475 SUPERFAMILY SSF53448 4 283 6.93E-69 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03446 03b249cc0422a4dfacd08b43609ae38b 475 Gene3D G3DSA:2.60.120.10 361 465 1.6E-18 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH03446 03b249cc0422a4dfacd08b43609ae38b 475 SUPERFAMILY SSF51182 188 474 8.91E-70 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH01706 004b9126aa769e7718556f72ca22cc53 1379 SUPERFAMILY SSF64484 13 1365 0.0 T 12-10-2018 AMJ96_CH01706 004b9126aa769e7718556f72ca22cc53 1379 Pfam PF04565 RNA polymerase Rpb2, domain 3 523 591 9.2E-32 T 12-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01706 004b9126aa769e7718556f72ca22cc53 1379 Gene3D G3DSA:2.40.50.150 841 963 9.9E-46 T 12-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01706 004b9126aa769e7718556f72ca22cc53 1379 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 15 1364 12.426 T 12-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01706 004b9126aa769e7718556f72ca22cc53 1379 Gene3D G3DSA:3.90.1100.10 452 645 1.4E-70 T 12-10-2018 AMJ96_CH01706 004b9126aa769e7718556f72ca22cc53 1379 Gene3D G3DSA:3.90.1100.10 20 178 5.6E-56 T 12-10-2018 AMJ96_CH01706 004b9126aa769e7718556f72ca22cc53 1379 Gene3D G3DSA:3.90.1100.10 654 723 1.8E-20 T 12-10-2018 AMJ96_CH01706 004b9126aa769e7718556f72ca22cc53 1379 Pfam PF04561 RNA polymerase Rpb2, domain 2 359 464 2.6E-18 T 12-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01706 004b9126aa769e7718556f72ca22cc53 1379 Pfam PF04561 RNA polymerase Rpb2, domain 2 179 231 2.5E-6 T 12-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01706 004b9126aa769e7718556f72ca22cc53 1379 Gene3D G3DSA:3.90.1110.10 327 451 1.7E-33 T 12-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01706 004b9126aa769e7718556f72ca22cc53 1379 Gene3D G3DSA:2.40.270.10 799 840 1.5E-5 T 12-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01706 004b9126aa769e7718556f72ca22cc53 1379 Pfam PF10385 RNA polymerase beta subunit external 1 domain 601 666 5.6E-22 T 12-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01706 004b9126aa769e7718556f72ca22cc53 1379 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 12 1361 0.0 T 12-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01706 004b9126aa769e7718556f72ca22cc53 1379 Gene3D G3DSA:3.90.1800.10 1274 1329 9.2E-11 T 12-10-2018 AMJ96_CH01706 004b9126aa769e7718556f72ca22cc53 1379 Pfam PF04563 RNA polymerase beta subunit 29 507 3.3E-33 T 12-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01706 004b9126aa769e7718556f72ca22cc53 1379 Pfam PF00562 RNA polymerase Rpb2, domain 6 728 1286 2.1E-166 T 12-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01706 004b9126aa769e7718556f72ca22cc53 1379 Pfam PF04560 RNA polymerase Rpb2, domain 7 1288 1362 2.1E-26 T 12-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01706 004b9126aa769e7718556f72ca22cc53 1379 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1085 1097 - T 12-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01706 004b9126aa769e7718556f72ca22cc53 1379 Gene3D G3DSA:2.40.50.100 724 797 8.7E-30 T 12-10-2018 AMJ96_CH01706 004b9126aa769e7718556f72ca22cc53 1379 Gene3D G3DSA:2.40.270.10 1026 1264 2.3E-82 T 12-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH02528 98c4002c420ba72c5eb1d631b651b560 347 Gene3D G3DSA:3.40.50.2300 94 328 2.8E-67 T 12-10-2018 AMJ96_CH02528 98c4002c420ba72c5eb1d631b651b560 347 SUPERFAMILY SSF47413 19 78 2.44E-13 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH02528 98c4002c420ba72c5eb1d631b651b560 347 Gene3D G3DSA:1.10.260.40 11 76 8.4E-17 T 12-10-2018 AMJ96_CH02528 98c4002c420ba72c5eb1d631b651b560 347 SUPERFAMILY SSF53822 76 332 2.78E-30 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH02528 98c4002c420ba72c5eb1d631b651b560 347 SMART SM00354 19 89 4.8E-15 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH02528 98c4002c420ba72c5eb1d631b651b560 347 Gene3D G3DSA:3.40.50.2300 180 308 2.8E-67 T 12-10-2018 AMJ96_CH02528 98c4002c420ba72c5eb1d631b651b560 347 Pfam PF00356 Bacterial regulatory proteins, lacI family 21 66 2.1E-10 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH02528 98c4002c420ba72c5eb1d631b651b560 347 Pfam PF13377 Periplasmic binding protein-like domain 188 330 2.1E-13 T 12-10-2018 AMJ96_CH00669 048a289ab3a9a97eda1e50bfec5bbf0b 238 SMART SM00387 128 238 2.4E-22 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00669 048a289ab3a9a97eda1e50bfec5bbf0b 238 Pfam PF00512 His Kinase A (phospho-acceptor) domain 22 83 1.2E-8 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH00669 048a289ab3a9a97eda1e50bfec5bbf0b 238 Gene3D G3DSA:1.10.287.130 13 84 5.3E-10 T 12-10-2018 AMJ96_CH00669 048a289ab3a9a97eda1e50bfec5bbf0b 238 SUPERFAMILY SSF55874 83 236 6.68E-31 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00669 048a289ab3a9a97eda1e50bfec5bbf0b 238 SUPERFAMILY SSF47384 18 83 7.85E-13 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH00669 048a289ab3a9a97eda1e50bfec5bbf0b 238 PRINTS PR00344 Bacterial sensor protein C-terminal signature 184 194 5.0E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00669 048a289ab3a9a97eda1e50bfec5bbf0b 238 PRINTS PR00344 Bacterial sensor protein C-terminal signature 166 180 5.0E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00669 048a289ab3a9a97eda1e50bfec5bbf0b 238 PRINTS PR00344 Bacterial sensor protein C-terminal signature 223 236 5.0E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00669 048a289ab3a9a97eda1e50bfec5bbf0b 238 PRINTS PR00344 Bacterial sensor protein C-terminal signature 199 217 5.0E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00669 048a289ab3a9a97eda1e50bfec5bbf0b 238 Gene3D G3DSA:3.30.565.10 90 237 9.3E-31 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00669 048a289ab3a9a97eda1e50bfec5bbf0b 238 SMART SM00388 20 88 2.5E-6 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH00669 048a289ab3a9a97eda1e50bfec5bbf0b 238 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 133 237 1.7E-16 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00576 b74458db5ede3f75fa0fd3bd3b2a6cb5 402 PIRSF PIRSF000429 1 402 3.9E-117 T 12-10-2018 IPR002155 Thiolase GO:0016747 AMJ96_CH00576 b74458db5ede3f75fa0fd3bd3b2a6cb5 402 Gene3D G3DSA:3.40.47.10 6 299 1.7E-134 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH00576 b74458db5ede3f75fa0fd3bd3b2a6cb5 402 ProSitePatterns PS00099 Thiolases active site. 383 396 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 AMJ96_CH00576 b74458db5ede3f75fa0fd3bd3b2a6cb5 402 ProSitePatterns PS00737 Thiolases signature 2. 348 364 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 AMJ96_CH00576 b74458db5ede3f75fa0fd3bd3b2a6cb5 402 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 AMJ96_CH00576 b74458db5ede3f75fa0fd3bd3b2a6cb5 402 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 400 1.9E-121 T 12-10-2018 IPR002155 Thiolase GO:0016747 AMJ96_CH00576 b74458db5ede3f75fa0fd3bd3b2a6cb5 402 Gene3D G3DSA:3.40.47.10 125 397 1.7E-134 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH00576 b74458db5ede3f75fa0fd3bd3b2a6cb5 402 SUPERFAMILY SSF53901 280 401 1.44E-40 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH00576 b74458db5ede3f75fa0fd3bd3b2a6cb5 402 Pfam PF00108 Thiolase, N-terminal domain 4 229 1.7E-46 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AMJ96_CH00576 b74458db5ede3f75fa0fd3bd3b2a6cb5 402 Pfam PF02803 Thiolase, C-terminal domain 279 401 1.4E-44 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMJ96_CH00576 b74458db5ede3f75fa0fd3bd3b2a6cb5 402 SUPERFAMILY SSF53901 1 273 3.79E-62 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH01766 499b2e3d9eba8109a0b7e98a4e28d42d 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 310 1.8E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH01766 499b2e3d9eba8109a0b7e98a4e28d42d 317 SUPERFAMILY SSF161098 87 303 5.76E-48 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01766 499b2e3d9eba8109a0b7e98a4e28d42d 317 Gene3D G3DSA:1.10.3720.10 68 315 3.2E-55 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01043 de7f0dad828eef8c2357a26c530d37d3 378 Gene3D G3DSA:1.10.3290.10 36 294 9.9E-46 T 12-10-2018 IPR036597 Fido-like domain superfamily AMJ96_CH01043 de7f0dad828eef8c2357a26c530d37d3 378 Pfam PF13784 Fic/DOC family N-terminal 34 117 1.7E-21 T 12-10-2018 IPR025758 Fic/DOC N-terminal AMJ96_CH01043 de7f0dad828eef8c2357a26c530d37d3 378 SUPERFAMILY SSF140931 105 297 1.83E-36 T 12-10-2018 IPR036597 Fido-like domain superfamily AMJ96_CH01043 de7f0dad828eef8c2357a26c530d37d3 378 Pfam PF02661 Fic/DOC family 127 229 1.0E-18 T 12-10-2018 IPR003812 Fido domain AMJ96_CH01043 de7f0dad828eef8c2357a26c530d37d3 378 PIRSF PIRSF038925 7 378 9.0E-100 T 12-10-2018 IPR026287 Adenosine monophosphate-protein transferase AMJ96_CH03476 60ccfbbec4453447ed71b6d62f74ae16 437 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 5 322 8.5E-50 T 12-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 AMJ96_CH03476 60ccfbbec4453447ed71b6d62f74ae16 437 SUPERFAMILY SSF51395 1 323 7.0E-70 T 12-10-2018 AMJ96_CH03476 60ccfbbec4453447ed71b6d62f74ae16 437 Gene3D G3DSA:3.30.70.20 312 418 2.4E-23 T 12-10-2018 AMJ96_CH03476 60ccfbbec4453447ed71b6d62f74ae16 437 Pfam PF14697 4Fe-4S dicluster domain 340 400 1.2E-23 T 12-10-2018 AMJ96_CH03476 60ccfbbec4453447ed71b6d62f74ae16 437 Gene3D G3DSA:3.20.20.70 4 311 7.0E-100 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH03476 60ccfbbec4453447ed71b6d62f74ae16 437 Pfam PF01180 Dihydroorotate dehydrogenase 5 307 4.2E-25 T 12-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 AMJ96_CH03476 60ccfbbec4453447ed71b6d62f74ae16 437 SUPERFAMILY SSF54862 340 405 6.8E-15 T 12-10-2018 AMJ96_CH03476 60ccfbbec4453447ed71b6d62f74ae16 437 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 382 393 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMJ96_CH03948 d9cdc666b5c3f1d6fcd35cf1bbe6db0d 296 Gene3D G3DSA:2.70.98.10 9 287 2.1E-60 T 12-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AMJ96_CH03948 d9cdc666b5c3f1d6fcd35cf1bbe6db0d 296 Pfam PF01263 Aldose 1-epimerase 9 283 4.3E-31 T 12-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 AMJ96_CH03948 d9cdc666b5c3f1d6fcd35cf1bbe6db0d 296 SUPERFAMILY SSF74650 9 287 2.26E-41 T 12-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 AMJ96_CH01268 d4c0ff084386fb34c2d7196351046dc0 702 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 629 651 5.4E-44 T 12-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AMJ96_CH01268 d4c0ff084386fb34c2d7196351046dc0 702 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 611 626 5.4E-44 T 12-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AMJ96_CH01268 d4c0ff084386fb34c2d7196351046dc0 702 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 522 541 5.4E-44 T 12-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AMJ96_CH01268 d4c0ff084386fb34c2d7196351046dc0 702 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 494 518 5.4E-44 T 12-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AMJ96_CH01268 d4c0ff084386fb34c2d7196351046dc0 702 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 468 486 5.4E-44 T 12-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AMJ96_CH01268 d4c0ff084386fb34c2d7196351046dc0 702 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 552 572 5.4E-44 T 12-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AMJ96_CH01268 d4c0ff084386fb34c2d7196351046dc0 702 Pfam PF00326 Prolyl oligopeptidase family 485 700 6.0E-67 T 12-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AMJ96_CH01268 d4c0ff084386fb34c2d7196351046dc0 702 Gene3D G3DSA:2.130.10.120 89 426 2.7E-245 T 12-10-2018 AMJ96_CH01268 d4c0ff084386fb34c2d7196351046dc0 702 Gene3D G3DSA:3.40.50.1820 29 694 2.7E-245 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01268 d4c0ff084386fb34c2d7196351046dc0 702 SUPERFAMILY SSF50993 6 432 9.94E-91 T 12-10-2018 AMJ96_CH01268 d4c0ff084386fb34c2d7196351046dc0 702 SUPERFAMILY SSF53474 436 678 6.73E-44 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01268 d4c0ff084386fb34c2d7196351046dc0 702 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 529 559 - T 12-10-2018 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 AMJ96_CH01268 d4c0ff084386fb34c2d7196351046dc0 702 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 11 424 2.2E-81 T 12-10-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 AMJ96_CH00399 abba065df0a0f190677ee0ce0ed24f65 188 SMART SM00932 3 88 1.9E-50 T 12-10-2018 IPR014824 Scaffold protein Nfu/NifU, N-terminal AMJ96_CH00399 abba065df0a0f190677ee0ce0ed24f65 188 SUPERFAMILY SSF117916 106 187 1.59E-26 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMJ96_CH00399 abba065df0a0f190677ee0ce0ed24f65 188 Gene3D G3DSA:3.30.1370.70 1 95 9.9E-36 T 12-10-2018 IPR036498 Scaffold protein Nfu/NifU, N-terminal domain superfamily AMJ96_CH00399 abba065df0a0f190677ee0ce0ed24f65 188 Pfam PF01106 NifU-like domain 120 186 5.0E-28 T 12-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AMJ96_CH00399 abba065df0a0f190677ee0ce0ed24f65 188 Pfam PF08712 Scaffold protein Nfu/NifU N terminal 3 88 2.1E-31 T 12-10-2018 IPR014824 Scaffold protein Nfu/NifU, N-terminal AMJ96_CH00399 abba065df0a0f190677ee0ce0ed24f65 188 Gene3D G3DSA:3.30.300.130 114 187 1.2E-27 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMJ96_CH00399 abba065df0a0f190677ee0ce0ed24f65 188 SUPERFAMILY SSF110836 1 90 6.54E-30 T 12-10-2018 IPR036498 Scaffold protein Nfu/NifU, N-terminal domain superfamily AMJ96_CH00399 abba065df0a0f190677ee0ce0ed24f65 188 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 124 187 9.0E-29 T 12-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AMJ96_CH00399 abba065df0a0f190677ee0ce0ed24f65 188 PIRSF PIRSF036773 1 188 3.1E-72 T 12-10-2018 IPR035433 NFU1-like AMJ96_CH01648 33320ae2ef6d880a779469c4831053a3 503 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 378 404 9.7E-50 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01648 33320ae2ef6d880a779469c4831053a3 503 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 139 158 9.7E-50 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01648 33320ae2ef6d880a779469c4831053a3 503 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 326 345 9.7E-50 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01648 33320ae2ef6d880a779469c4831053a3 503 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 169 193 9.7E-50 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01648 33320ae2ef6d880a779469c4831053a3 503 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 238 262 9.7E-50 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01648 33320ae2ef6d880a779469c4831053a3 503 Pfam PF00361 Proton-conducting membrane transporter 133 420 1.1E-90 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01648 33320ae2ef6d880a779469c4831053a3 503 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 7 486 1.3E-190 T 12-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03284 33e7fd506aa039d21d8c50a4e46c1b4f 436 Gene3D G3DSA:2.30.40.10 7 426 5.6E-172 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH03284 33e7fd506aa039d21d8c50a4e46c1b4f 436 SUPERFAMILY SSF51338 347 431 2.09E-12 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH03284 33e7fd506aa039d21d8c50a4e46c1b4f 436 SUPERFAMILY SSF51338 28 85 1.43E-10 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH03284 33e7fd506aa039d21d8c50a4e46c1b4f 436 Gene3D G3DSA:3.20.20.140 71 390 5.6E-172 T 12-10-2018 AMJ96_CH03284 33e7fd506aa039d21d8c50a4e46c1b4f 436 SUPERFAMILY SSF51556 70 374 8.51E-93 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_CH03284 33e7fd506aa039d21d8c50a4e46c1b4f 436 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 28 428 9.8E-174 T 12-10-2018 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|Reactome: R-HSA-74259 AMJ96_CH03284 33e7fd506aa039d21d8c50a4e46c1b4f 436 Pfam PF01979 Amidohydrolase family 67 429 3.1E-56 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMJ96_CH03708 8808e0eb1c388dd85d487eaaebf45243 306 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 229 8.5E-25 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_CH03708 8808e0eb1c388dd85d487eaaebf45243 306 SUPERFAMILY SSF51735 1 277 1.14E-42 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03708 8808e0eb1c388dd85d487eaaebf45243 306 Gene3D G3DSA:3.40.50.720 1 275 4.1E-41 T 12-10-2018 AMJ96_CH03613 49fc86cf294ab065e575e7ddb9b85410 488 ProSitePatterns PS00079 Multicopper oxidases signature 1. 462 482 - T 12-10-2018 IPR033138 Multicopper oxidases, conserved site AMJ96_CH03613 49fc86cf294ab065e575e7ddb9b85410 488 Gene3D G3DSA:2.60.40.420 19 153 2.1E-20 T 12-10-2018 IPR008972 Cupredoxin AMJ96_CH03613 49fc86cf294ab065e575e7ddb9b85410 488 Gene3D G3DSA:2.60.40.420 154 354 1.7E-20 T 12-10-2018 IPR008972 Cupredoxin AMJ96_CH03613 49fc86cf294ab065e575e7ddb9b85410 488 SUPERFAMILY SSF49503 154 334 3.36E-20 T 12-10-2018 IPR008972 Cupredoxin AMJ96_CH03613 49fc86cf294ab065e575e7ddb9b85410 488 Pfam PF07731 Multicopper oxidase 388 482 5.2E-27 T 12-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 AMJ96_CH03613 49fc86cf294ab065e575e7ddb9b85410 488 Gene3D G3DSA:2.60.40.420 362 485 4.2E-32 T 12-10-2018 IPR008972 Cupredoxin AMJ96_CH03613 49fc86cf294ab065e575e7ddb9b85410 488 Pfam PF00394 Multicopper oxidase 156 331 3.5E-10 T 12-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 AMJ96_CH03613 49fc86cf294ab065e575e7ddb9b85410 488 Pfam PF07732 Multicopper oxidase 43 147 5.5E-18 T 12-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 AMJ96_CH03613 49fc86cf294ab065e575e7ddb9b85410 488 ProSitePatterns PS00080 Multicopper oxidases signature 2. 467 478 - T 12-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 AMJ96_CH03613 49fc86cf294ab065e575e7ddb9b85410 488 SUPERFAMILY SSF49503 360 484 8.97E-32 T 12-10-2018 IPR008972 Cupredoxin AMJ96_CH03613 49fc86cf294ab065e575e7ddb9b85410 488 SUPERFAMILY SSF49503 21 148 1.16E-20 T 12-10-2018 IPR008972 Cupredoxin AMJ96_CH00738 3f6830b33b49ac8fe116a877d51e731f 453 Gene3D G3DSA:3.40.190.10 171 434 1.3E-47 T 12-10-2018 AMJ96_CH00738 3f6830b33b49ac8fe116a877d51e731f 453 Pfam PF01547 Bacterial extracellular solute-binding protein 65 366 5.9E-18 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH00738 3f6830b33b49ac8fe116a877d51e731f 453 SUPERFAMILY SSF53850 50 452 1.99E-49 T 12-10-2018 AMJ96_CH00738 3f6830b33b49ac8fe116a877d51e731f 453 Gene3D G3DSA:3.40.190.10 68 398 1.3E-47 T 12-10-2018 AMJ96_PD00444 6ac21add94a5483bf1add2f4b97a160b 347 SUPERFAMILY SSF53659 1 326 2.3E-107 T 12-10-2018 AMJ96_PD00444 6ac21add94a5483bf1add2f4b97a160b 347 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 1 346 1.0E-172 T 12-10-2018 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 AMJ96_PD00444 6ac21add94a5483bf1add2f4b97a160b 347 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 326 2.9E-85 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AMJ96_PD00444 6ac21add94a5483bf1add2f4b97a160b 347 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 238 257 - T 12-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 AMJ96_PD00444 6ac21add94a5483bf1add2f4b97a160b 347 SMART SM01329 5 342 3.0E-155 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AMJ96_PD00444 6ac21add94a5483bf1add2f4b97a160b 347 Gene3D G3DSA:3.40.718.10 1 347 1.1E-125 T 12-10-2018 AMJ96_CH00434 0f4a127e3dbbe1dff38f44cbc58920f6 311 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 3 305 32.597 T 12-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 AMJ96_CH00434 0f4a127e3dbbe1dff38f44cbc58920f6 311 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 4 302 6.8E-70 T 12-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 AMJ96_CH00434 0f4a127e3dbbe1dff38f44cbc58920f6 311 Pfam PF00551 Formyl transferase 9 182 2.3E-36 T 12-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMJ96_CH00434 0f4a127e3dbbe1dff38f44cbc58920f6 311 Gene3D G3DSA:3.40.50.12230 3 310 4.2E-91 T 12-10-2018 AMJ96_CH00434 0f4a127e3dbbe1dff38f44cbc58920f6 311 SUPERFAMILY SSF50486 207 310 6.28E-26 T 12-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 AMJ96_CH00434 0f4a127e3dbbe1dff38f44cbc58920f6 311 SUPERFAMILY SSF53328 3 209 3.66E-59 T 12-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMJ96_CH00434 0f4a127e3dbbe1dff38f44cbc58920f6 311 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 135 158 - T 12-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMJ96_CH00434 0f4a127e3dbbe1dff38f44cbc58920f6 311 Pfam PF02911 Formyl transferase, C-terminal domain 206 302 3.8E-22 T 12-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMJ96_CH03008 fd372e8c1a0bbabad0837e1d33b61aa2 575 PRINTS PR00423 Cell division protein FtsZ signature 101 121 2.8E-48 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMJ96_CH03008 fd372e8c1a0bbabad0837e1d33b61aa2 575 PRINTS PR00423 Cell division protein FtsZ signature 192 214 2.8E-48 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMJ96_CH03008 fd372e8c1a0bbabad0837e1d33b61aa2 575 PRINTS PR00423 Cell division protein FtsZ signature 215 236 2.8E-48 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMJ96_CH03008 fd372e8c1a0bbabad0837e1d33b61aa2 575 PRINTS PR00423 Cell division protein FtsZ signature 129 150 2.8E-48 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMJ96_CH03008 fd372e8c1a0bbabad0837e1d33b61aa2 575 Gene3D G3DSA:3.30.1330.20 224 335 1.5E-37 T 12-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 AMJ96_CH03008 fd372e8c1a0bbabad0837e1d33b61aa2 575 ProSitePatterns PS01134 FtsZ protein signature 1. 47 81 - T 12-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AMJ96_CH03008 fd372e8c1a0bbabad0837e1d33b61aa2 575 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 12 381 36.854 T 12-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 AMJ96_CH03008 fd372e8c1a0bbabad0837e1d33b61aa2 575 Gene3D G3DSA:3.40.50.1440 8 223 1.7E-77 T 12-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 AMJ96_CH03008 fd372e8c1a0bbabad0837e1d33b61aa2 575 SMART SM00864 16 208 4.3E-108 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMJ96_CH03008 fd372e8c1a0bbabad0837e1d33b61aa2 575 TIGRFAM TIGR03483 FtsZ_alphas_C: cell division protein FtsZ, alphaProteobacterial C-terminal extension 462 575 3.9E-47 T 12-10-2018 IPR017844 Cell division protein FtsZ, C-terminal extension GO:0005525|GO:0005737|GO:0051301 AMJ96_CH03008 fd372e8c1a0bbabad0837e1d33b61aa2 575 ProSitePatterns PS01135 FtsZ protein signature 2. 100 121 - T 12-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AMJ96_CH03008 fd372e8c1a0bbabad0837e1d33b61aa2 575 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 14 329 7.8E-120 T 12-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 AMJ96_CH03008 fd372e8c1a0bbabad0837e1d33b61aa2 575 SUPERFAMILY SSF55307 210 322 3.89E-42 T 12-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 AMJ96_CH03008 fd372e8c1a0bbabad0837e1d33b61aa2 575 SMART SM00865 210 328 4.9E-57 T 12-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 AMJ96_CH03008 fd372e8c1a0bbabad0837e1d33b61aa2 575 Pfam PF12327 FtsZ family, C-terminal domain 225 320 6.8E-38 T 12-10-2018 IPR024757 Cell division protein FtsZ, C-terminal AMJ96_CH03008 fd372e8c1a0bbabad0837e1d33b61aa2 575 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 16 177 1.6E-38 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMJ96_CH03008 fd372e8c1a0bbabad0837e1d33b61aa2 575 SUPERFAMILY SSF52490 15 211 8.24E-69 T 12-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 AMJ96_PC00304 c736f0a083997827eaf1ac3ae2029b5f 430 Pfam PF01261 Xylose isomerase-like TIM barrel 101 291 5.8E-7 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMJ96_PC00304 c736f0a083997827eaf1ac3ae2029b5f 430 SUPERFAMILY SSF51658 52 407 3.87E-81 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_PC00304 c736f0a083997827eaf1ac3ae2029b5f 430 ProDom PD042532 ISOMERASE L-RHAMNOSE METAL-BINDING METABOLISM RHAMNOSE MANGANESE ENZYME KINASE 3D-STRUCTURE RHAA/RHAB 37 419 0.001 T 12-10-2018 AMJ96_PC00304 c736f0a083997827eaf1ac3ae2029b5f 430 TIGRFAM TIGR02629 L_rham_iso_rhiz: L-rhamnose catabolism isomerase 11 421 1.6E-263 T 12-10-2018 IPR013451 L-rhamnose catabolism isomerase AMJ96_PC00304 c736f0a083997827eaf1ac3ae2029b5f 430 Gene3D G3DSA:3.20.20.150 1 421 7.3E-152 T 12-10-2018 AMJ96_PD00536 ef93c2804d2babd6fa1fb43e0587ed3f 620 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 519 548 4.2E-43 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_PD00536 ef93c2804d2babd6fa1fb43e0587ed3f 620 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 471 500 4.2E-43 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_PD00536 ef93c2804d2babd6fa1fb43e0587ed3f 620 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 365 394 4.2E-43 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_PD00536 ef93c2804d2babd6fa1fb43e0587ed3f 620 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 442 469 4.2E-43 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_PD00536 ef93c2804d2babd6fa1fb43e0587ed3f 620 Gene3D G3DSA:1.10.287.950 296 593 2.4E-75 T 12-10-2018 AMJ96_PD00536 ef93c2804d2babd6fa1fb43e0587ed3f 620 Gene3D G3DSA:1.10.8.500 210 261 1.6E-16 T 12-10-2018 AMJ96_PD00536 ef93c2804d2babd6fa1fb43e0587ed3f 620 SMART SM00304 210 263 9.1E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00536 ef93c2804d2babd6fa1fb43e0587ed3f 620 SMART SM00304 284 343 32.0 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00536 ef93c2804d2babd6fa1fb43e0587ed3f 620 SUPERFAMILY SSF158472 212 260 6.93E-10 T 12-10-2018 AMJ96_PD00536 ef93c2804d2babd6fa1fb43e0587ed3f 620 SUPERFAMILY SSF58104 311 592 8.11E-66 T 12-10-2018 AMJ96_PD00536 ef93c2804d2babd6fa1fb43e0587ed3f 620 SMART SM00283 344 591 9.7E-98 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_PD00536 ef93c2804d2babd6fa1fb43e0587ed3f 620 Pfam PF00672 HAMP domain 212 258 1.7E-8 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00536 ef93c2804d2babd6fa1fb43e0587ed3f 620 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 405 558 9.4E-50 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_PD00536 ef93c2804d2babd6fa1fb43e0587ed3f 620 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 181 1.6E-21 T 12-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain AMJ96_CH04378 211212544b3fbb1516c48ccf9c24aacc 625 Pfam PF01134 Glucose inhibited division protein A 7 395 5.2E-159 T 12-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 AMJ96_CH04378 211212544b3fbb1516c48ccf9c24aacc 625 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 366 389 - T 12-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 AMJ96_CH04378 211212544b3fbb1516c48ccf9c24aacc 625 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 6 617 2.1E-234 T 12-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 AMJ96_CH04378 211212544b3fbb1516c48ccf9c24aacc 625 Pfam PF13932 GidA associated domain 399 611 2.9E-65 T 12-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 AMJ96_CH04378 211212544b3fbb1516c48ccf9c24aacc 625 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 4 619 39.998 T 12-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 AMJ96_CH04378 211212544b3fbb1516c48ccf9c24aacc 625 SUPERFAMILY SSF51905 6 259 4.99E-46 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH04378 211212544b3fbb1516c48ccf9c24aacc 625 Gene3D G3DSA:3.50.50.60 293 456 2.0E-57 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH04378 211212544b3fbb1516c48ccf9c24aacc 625 Gene3D G3DSA:3.50.50.60 1 265 1.4E-89 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH04378 211212544b3fbb1516c48ccf9c24aacc 625 Gene3D G3DSA:1.10.150.570 564 617 4.8E-19 T 12-10-2018 AMJ96_CH04378 211212544b3fbb1516c48ccf9c24aacc 625 SMART SM01228 541 612 4.6E-32 T 12-10-2018 AMJ96_CH04378 211212544b3fbb1516c48ccf9c24aacc 625 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 271 285 - T 12-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 AMJ96_PB00165 36ca8e356a7249776029bec1d9a91681 389 Pfam PF13407 Periplasmic binding protein domain 65 287 7.1E-36 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_PB00165 36ca8e356a7249776029bec1d9a91681 389 Gene3D G3DSA:3.40.50.2300 62 157 1.6E-10 T 12-10-2018 AMJ96_PB00165 36ca8e356a7249776029bec1d9a91681 389 Gene3D G3DSA:3.40.50.2300 164 353 1.8E-22 T 12-10-2018 AMJ96_PB00165 36ca8e356a7249776029bec1d9a91681 389 SUPERFAMILY SSF53822 62 334 5.34E-41 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH03495 0ae81b78a815d50298cff7d7a0e995cd 2036 Pfam PF09369 Domain of unknown function (DUF1998) 1556 1636 2.4E-10 T 12-10-2018 IPR018973 DEAD/DEAH-box helicase, putative AMJ96_CH03495 0ae81b78a815d50298cff7d7a0e995cd 2036 SMART SM00490 1016 1095 2.0E-12 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH03495 0ae81b78a815d50298cff7d7a0e995cd 2036 Pfam PF00271 Helicase conserved C-terminal domain 1042 1095 3.4E-11 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH03495 0ae81b78a815d50298cff7d7a0e995cd 2036 SMART SM00487 95 331 3.6E-26 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMJ96_CH03495 0ae81b78a815d50298cff7d7a0e995cd 2036 SUPERFAMILY SSF52540 117 1135 9.44E-30 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03495 0ae81b78a815d50298cff7d7a0e995cd 2036 Gene3D G3DSA:3.40.50.300 994 1130 2.5E-18 T 12-10-2018 AMJ96_CH03495 0ae81b78a815d50298cff7d7a0e995cd 2036 Pfam PF00270 DEAD/DEAH box helicase 101 298 3.0E-16 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMJ96_CH03495 0ae81b78a815d50298cff7d7a0e995cd 2036 Gene3D G3DSA:3.40.50.300 78 313 8.1E-37 T 12-10-2018 AMJ96_CH03495 0ae81b78a815d50298cff7d7a0e995cd 2036 SUPERFAMILY SSF52540 98 312 8.1E-27 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00707 da9ece9eab26ed2cc849be49f228e53e 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 83 102 5.8E-60 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMJ96_CH00707 da9ece9eab26ed2cc849be49f228e53e 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 63 83 5.8E-60 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMJ96_CH00707 da9ece9eab26ed2cc849be49f228e53e 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 218 243 5.8E-60 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMJ96_CH00707 da9ece9eab26ed2cc849be49f228e53e 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 173 193 5.8E-60 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMJ96_CH00707 da9ece9eab26ed2cc849be49f228e53e 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 44 63 5.8E-60 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMJ96_CH00707 da9ece9eab26ed2cc849be49f228e53e 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 194 215 5.8E-60 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMJ96_CH00707 da9ece9eab26ed2cc849be49f228e53e 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 142 154 9.9E-30 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMJ96_CH00707 da9ece9eab26ed2cc849be49f228e53e 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 42 51 9.9E-30 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMJ96_CH00707 da9ece9eab26ed2cc849be49f228e53e 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 234 244 9.9E-30 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMJ96_CH00707 da9ece9eab26ed2cc849be49f228e53e 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 166 178 9.9E-30 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMJ96_CH00707 da9ece9eab26ed2cc849be49f228e53e 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 102 114 9.9E-30 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMJ96_CH00707 da9ece9eab26ed2cc849be49f228e53e 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 114 128 9.9E-30 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMJ96_CH00707 da9ece9eab26ed2cc849be49f228e53e 245 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 46 244 1.9E-93 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AMJ96_CH00707 da9ece9eab26ed2cc849be49f228e53e 245 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 221 233 - T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMJ96_CH00707 da9ece9eab26ed2cc849be49f228e53e 245 Pfam PF00813 FliP family 46 240 2.9E-76 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMJ96_CH00707 da9ece9eab26ed2cc849be49f228e53e 245 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 173 188 - T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMJ96_CH02993 68563e1de593bc543108491392425075 611 Pfam PF01321 Creatinase/Prolidase N-terminal domain 17 138 1.4E-13 T 12-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 AMJ96_CH02993 68563e1de593bc543108491392425075 611 Pfam PF16188 C-terminal region of peptidase_M24 549 609 7.8E-20 T 12-10-2018 IPR032416 Peptidase M24, C-terminal domain AMJ96_CH02993 68563e1de593bc543108491392425075 611 SUPERFAMILY SSF55920 315 574 4.19E-54 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like AMJ96_CH02993 68563e1de593bc543108491392425075 611 Gene3D G3DSA:3.40.350.10 10 156 3.7E-32 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMJ96_CH02993 68563e1de593bc543108491392425075 611 Pfam PF00557 Metallopeptidase family M24 325 537 3.7E-42 T 12-10-2018 IPR000994 Peptidase M24 AMJ96_CH02993 68563e1de593bc543108491392425075 611 Pfam PF16189 Creatinase/Prolidase N-terminal domain 158 318 7.8E-30 T 12-10-2018 AMJ96_CH02993 68563e1de593bc543108491392425075 611 SUPERFAMILY SSF53092 15 137 3.49E-8 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMJ96_CH02993 68563e1de593bc543108491392425075 611 Gene3D G3DSA:3.40.350.10 157 302 2.0E-20 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMJ96_CH02993 68563e1de593bc543108491392425075 611 Gene3D G3DSA:3.90.230.10 312 611 2.3E-90 T 12-10-2018 AMJ96_PB00085 600c1dad32793fceb7e83c88b48a0dfb 338 SMART SM00091 13 80 1.7E-5 T 12-10-2018 IPR000014 PAS domain AMJ96_PB00085 600c1dad32793fceb7e83c88b48a0dfb 338 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 9 135 3.5E-18 T 12-10-2018 IPR000014 PAS domain AMJ96_PB00085 600c1dad32793fceb7e83c88b48a0dfb 338 SMART SM00911 142 223 1.3E-28 T 12-10-2018 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 AMJ96_PB00085 600c1dad32793fceb7e83c88b48a0dfb 338 Pfam PF07536 HWE histidine kinase 142 222 1.3E-20 T 12-10-2018 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 AMJ96_PB00085 600c1dad32793fceb7e83c88b48a0dfb 338 SUPERFAMILY SSF55785 26 135 2.84E-22 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PB00085 600c1dad32793fceb7e83c88b48a0dfb 338 Gene3D G3DSA:3.30.565.10 200 329 9.2E-7 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PB00085 600c1dad32793fceb7e83c88b48a0dfb 338 Pfam PF13426 PAS domain 27 128 1.9E-12 T 12-10-2018 IPR000014 PAS domain AMJ96_PB00085 600c1dad32793fceb7e83c88b48a0dfb 338 Gene3D G3DSA:3.30.450.20 5 152 1.4E-26 T 12-10-2018 AMJ96_PD00479 a2cd7fdb7cb75ba688266e30938250aa 448 Gene3D G3DSA:3.50.50.60 38 403 1.4E-43 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00479 a2cd7fdb7cb75ba688266e30938250aa 448 SUPERFAMILY SSF51905 37 418 9.85E-30 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00479 a2cd7fdb7cb75ba688266e30938250aa 448 Pfam PF01266 FAD dependent oxidoreductase 38 402 5.1E-33 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_PD00479 a2cd7fdb7cb75ba688266e30938250aa 448 Gene3D G3DSA:3.30.9.10 134 364 1.4E-43 T 12-10-2018 AMJ96_CH01250 096937a39479efc397e5a0d8907afa15 300 SUPERFAMILY SSF56281 46 263 4.76E-32 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH01250 096937a39479efc397e5a0d8907afa15 300 SMART SM00849 46 234 3.5E-13 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH01250 096937a39479efc397e5a0d8907afa15 300 Pfam PF00753 Metallo-beta-lactamase superfamily 50 234 4.9E-5 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH01250 096937a39479efc397e5a0d8907afa15 300 Gene3D G3DSA:3.60.15.10 39 267 1.3E-25 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_PB00298 717ae9171080872e018b13872d9626f7 483 PIRSF PIRSF000774 1 474 1.4E-141 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMJ96_PB00298 717ae9171080872e018b13872d9626f7 483 Gene3D G3DSA:1.10.10.1330 116 227 2.9E-20 T 12-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily AMJ96_PB00298 717ae9171080872e018b13872d9626f7 483 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 452 459 - T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMJ96_PB00298 717ae9171080872e018b13872d9626f7 483 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 6 51 3.7E-16 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMJ96_PB00298 717ae9171080872e018b13872d9626f7 483 Pfam PF04963 Sigma-54 factor, core binding domain 111 297 6.4E-52 T 12-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 AMJ96_PB00298 717ae9171080872e018b13872d9626f7 483 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 11 471 2.8E-128 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMJ96_PB00298 717ae9171080872e018b13872d9626f7 483 PRINTS PR00045 Sigma-54 factor signature 447 465 8.8E-33 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMJ96_PB00298 717ae9171080872e018b13872d9626f7 483 PRINTS PR00045 Sigma-54 factor signature 372 384 8.8E-33 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMJ96_PB00298 717ae9171080872e018b13872d9626f7 483 PRINTS PR00045 Sigma-54 factor signature 183 200 8.8E-33 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMJ96_PB00298 717ae9171080872e018b13872d9626f7 483 PRINTS PR00045 Sigma-54 factor signature 388 399 8.8E-33 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMJ96_PB00298 717ae9171080872e018b13872d9626f7 483 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 360 379 - T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 AMJ96_PB00298 717ae9171080872e018b13872d9626f7 483 Pfam PF04552 Sigma-54, DNA binding domain 313 472 1.2E-70 T 12-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding AMJ96_PB00298 717ae9171080872e018b13872d9626f7 483 Gene3D G3DSA:1.10.10.60 413 471 5.1E-20 T 12-10-2018 AMJ96_CH01563 58d5851d1cb2b5238c4939540c8fba93 177 PIRSF PIRSF032079 1 177 7.7E-74 T 12-10-2018 IPR014569 Ubiquinol-cytochrome c chaperone, CBP3-related AMJ96_CH01563 58d5851d1cb2b5238c4939540c8fba93 177 Pfam PF03981 Ubiquinol-cytochrome C chaperone 34 171 8.2E-42 T 12-10-2018 IPR021150 Ubiquinol-cytochrome c chaperone/UPF0174 AMJ96_PA00040 9d94d2306da7846f980cb2f1c5e6e832 649 Pfam PF13242 HAD-hyrolase-like 363 440 1.9E-10 T 12-10-2018 AMJ96_PA00040 9d94d2306da7846f980cb2f1c5e6e832 649 SUPERFAMILY SSF52540 466 642 2.7E-18 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00040 9d94d2306da7846f980cb2f1c5e6e832 649 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 471 612 2.2E-7 T 12-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 AMJ96_PA00040 9d94d2306da7846f980cb2f1c5e6e832 649 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 254 408 1.3E-29 T 12-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 AMJ96_PA00040 9d94d2306da7846f980cb2f1c5e6e832 649 Gene3D G3DSA:3.40.50.300 450 644 4.3E-26 T 12-10-2018 AMJ96_PA00040 9d94d2306da7846f980cb2f1c5e6e832 649 Gene3D G3DSA:3.40.50.1000 250 444 2.7E-40 T 12-10-2018 IPR023214 HAD superfamily AMJ96_PA00040 9d94d2306da7846f980cb2f1c5e6e832 649 Pfam PF00483 Nucleotidyl transferase 10 240 1.5E-13 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AMJ96_PA00040 9d94d2306da7846f980cb2f1c5e6e832 649 Gene3D G3DSA:3.90.550.10 6 248 3.7E-38 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_PA00040 9d94d2306da7846f980cb2f1c5e6e832 649 SUPERFAMILY SSF56784 247 441 1.08E-34 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_PA00040 9d94d2306da7846f980cb2f1c5e6e832 649 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 255 409 2.0E-19 T 12-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 AMJ96_PA00040 9d94d2306da7846f980cb2f1c5e6e832 649 SMART SM00382 467 632 0.0058 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00040 9d94d2306da7846f980cb2f1c5e6e832 649 SUPERFAMILY SSF53448 9 279 2.16E-38 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH01448 573a8f110953303182802af3d5f2eab1 281 Pfam PF01571 Aminomethyltransferase folate-binding domain 13 90 5.2E-8 T 12-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain AMJ96_CH01448 573a8f110953303182802af3d5f2eab1 281 SUPERFAMILY SSF103025 4 195 3.45E-47 T 12-10-2018 AMJ96_CH01448 573a8f110953303182802af3d5f2eab1 281 Gene3D G3DSA:3.30.70.1400 10 93 1.1E-24 T 12-10-2018 AMJ96_CH01448 573a8f110953303182802af3d5f2eab1 281 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 139 204 3.6E-22 T 12-10-2018 IPR017703 YgfZ/GcvT conserved site AMJ96_CH01448 573a8f110953303182802af3d5f2eab1 281 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 179 247 5.8E-10 T 12-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMJ96_CH01448 573a8f110953303182802af3d5f2eab1 281 PIRSF PIRSF006487 129 249 0.0028 T 12-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 AMJ96_CH01448 573a8f110953303182802af3d5f2eab1 281 PIRSF PIRSF006487 4 97 9.9E-8 T 12-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 AMJ96_CH01448 573a8f110953303182802af3d5f2eab1 281 Gene3D G3DSA:3.30.1360.120 135 260 1.6E-21 T 12-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMJ96_CH03242 e4c3aa872c598ee74a7efcb19655d52f 318 Gene3D G3DSA:3.40.190.10 35 296 2.4E-93 T 12-10-2018 AMJ96_CH03242 e4c3aa872c598ee74a7efcb19655d52f 318 TIGRFAM TIGR03414 ABC_choline_bnd: choline ABC transporter, periplasmic binding protein 25 315 7.9E-142 T 12-10-2018 IPR017783 Choline ABC transporter, substrate-binding protein GO:0015871|GO:0033265|GO:0042597 AMJ96_CH03242 e4c3aa872c598ee74a7efcb19655d52f 318 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 34 287 2.4E-53 T 12-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 AMJ96_CH03242 e4c3aa872c598ee74a7efcb19655d52f 318 Gene3D G3DSA:3.40.190.100 116 225 2.4E-93 T 12-10-2018 AMJ96_CH03242 e4c3aa872c598ee74a7efcb19655d52f 318 SUPERFAMILY SSF53850 27 303 2.17E-83 T 12-10-2018 AMJ96_CH02753 1bf9a2a7e2b01e698adc10f80380fcce 582 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 6 306 2.4E-50 T 12-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 AMJ96_CH02753 1bf9a2a7e2b01e698adc10f80380fcce 582 Gene3D G3DSA:3.40.50.720 118 289 9.2E-73 T 12-10-2018 AMJ96_CH02753 1bf9a2a7e2b01e698adc10f80380fcce 582 Gene3D G3DSA:3.30.1780.10 15 303 9.2E-73 T 12-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 AMJ96_CH02753 1bf9a2a7e2b01e698adc10f80380fcce 582 SUPERFAMILY SSF51735 15 305 1.61E-64 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02585 64b95aa11ec8939964fa302d9799a3c6 534 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 253 521 1.1E-67 T 12-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AMJ96_CH02585 64b95aa11ec8939964fa302d9799a3c6 534 Gene3D G3DSA:1.10.274.10 26 149 3.3E-40 T 12-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 AMJ96_CH02585 64b95aa11ec8939964fa302d9799a3c6 534 SUPERFAMILY SSF52009 129 233 7.85E-18 T 12-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 AMJ96_CH02585 64b95aa11ec8939964fa302d9799a3c6 534 SUPERFAMILY SSF47831 49 146 1.31E-18 T 12-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 AMJ96_CH02585 64b95aa11ec8939964fa302d9799a3c6 534 SUPERFAMILY SSF51621 249 525 1.6E-69 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMJ96_CH02585 64b95aa11ec8939964fa302d9799a3c6 534 Gene3D G3DSA:3.20.20.60 242 532 7.3E-75 T 12-10-2018 AMJ96_CH02585 64b95aa11ec8939964fa302d9799a3c6 534 Pfam PF00391 PEP-utilising enzyme, mobile domain 152 223 2.7E-9 T 12-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AMJ96_CH02585 64b95aa11ec8939964fa302d9799a3c6 534 Gene3D G3DSA:3.50.30.10 11 228 3.3E-40 T 12-10-2018 AMJ96_CH02585 64b95aa11ec8939964fa302d9799a3c6 534 Pfam PF05524 PEP-utilising enzyme, N-terminal 9 129 5.6E-15 T 12-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AMJ96_CH02565 3b5345d15fed9fb08c56e5d81433eaef 51 Pfam PF08085 Entericidin EcnA/B family 22 41 2.0E-6 T 12-10-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 AMJ96_CH01539 8b36973d25ce52d175d36f84cf086762 381 Gene3D G3DSA:1.10.150.80 193 289 1.7E-19 T 12-10-2018 AMJ96_CH01539 8b36973d25ce52d175d36f84cf086762 381 SUPERFAMILY SSF47819 298 367 2.83E-15 T 12-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 AMJ96_CH01539 8b36973d25ce52d175d36f84cf086762 381 Pfam PF01612 3'-5' exonuclease 1 167 2.9E-31 T 12-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMJ96_CH01539 8b36973d25ce52d175d36f84cf086762 381 Pfam PF00570 HRDC domain 209 262 3.0E-11 T 12-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 AMJ96_CH01539 8b36973d25ce52d175d36f84cf086762 381 SMART SM00474 1 168 1.8E-26 T 12-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMJ96_CH01539 8b36973d25ce52d175d36f84cf086762 381 SUPERFAMILY SSF47819 187 295 5.05E-26 T 12-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 AMJ96_CH01539 8b36973d25ce52d175d36f84cf086762 381 Gene3D G3DSA:3.30.420.10 1 190 6.7E-60 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_CH01539 8b36973d25ce52d175d36f84cf086762 381 TIGRFAM TIGR01388 rnd: ribonuclease D 1 364 1.2E-140 T 12-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 AMJ96_CH01539 8b36973d25ce52d175d36f84cf086762 381 SUPERFAMILY SSF53098 1 201 2.61E-65 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_CH01539 8b36973d25ce52d175d36f84cf086762 381 Hamap MF_01899 Ribonuclease D [rnd]. 1 364 45.295 T 12-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 AMJ96_CH03659 83690ecd83ef8df38c53171768c979ce 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 8.7E-18 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03659 83690ecd83ef8df38c53171768c979ce 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 196 216 8.7E-18 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03659 83690ecd83ef8df38c53171768c979ce 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 8.7E-18 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03659 83690ecd83ef8df38c53171768c979ce 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 8.7E-18 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03659 83690ecd83ef8df38c53171768c979ce 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 8.7E-18 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03659 83690ecd83ef8df38c53171768c979ce 249 Gene3D G3DSA:3.40.50.720 5 229 3.8E-43 T 12-10-2018 AMJ96_CH03659 83690ecd83ef8df38c53171768c979ce 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH03659 83690ecd83ef8df38c53171768c979ce 249 SUPERFAMILY SSF51735 5 247 3.9E-47 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03659 83690ecd83ef8df38c53171768c979ce 249 Pfam PF00106 short chain dehydrogenase 6 191 1.9E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00372 c649945f74835b5cdb1fd11475c64db1 524 SUPERFAMILY SSF54862 114 331 6.2E-26 T 12-10-2018 AMJ96_PB00372 c649945f74835b5cdb1fd11475c64db1 524 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 279 290 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMJ96_PB00372 c649945f74835b5cdb1fd11475c64db1 524 Pfam PF12801 4Fe-4S binding domain 106 139 4.1E-7 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMJ96_PB00372 c649945f74835b5cdb1fd11475c64db1 524 Pfam PF13746 4Fe-4S dicluster domain 228 330 9.5E-40 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMJ96_PB00372 c649945f74835b5cdb1fd11475c64db1 524 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 45 490 5.5E-156 T 12-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 AMJ96_PB00372 c649945f74835b5cdb1fd11475c64db1 524 Gene3D G3DSA:2.60.40.10 394 514 1.6E-10 T 12-10-2018 IPR013783 Immunoglobulin-like fold AMJ96_PB00372 c649945f74835b5cdb1fd11475c64db1 524 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 393 520 2.6E-21 T 12-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain AMJ96_PC00256 88daa03b65549f93cfef387ef195806f 311 Gene3D G3DSA:1.10.3720.10 66 308 3.2E-69 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00256 88daa03b65549f93cfef387ef195806f 311 SUPERFAMILY SSF161098 70 297 3.66E-62 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00256 88daa03b65549f93cfef387ef195806f 311 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 299 9.2E-20 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00654 324ef483dcaea05b6545c50e3d4442b8 1544 Gene3D G3DSA:3.40.50.300 534 766 7.9E-57 T 12-10-2018 AMJ96_PD00654 324ef483dcaea05b6545c50e3d4442b8 1544 Gene3D G3DSA:3.40.50.300 377 533 7.9E-57 T 12-10-2018 AMJ96_PD00654 324ef483dcaea05b6545c50e3d4442b8 1544 Pfam PF03389 MobA/MobL family 8 240 3.6E-75 T 12-10-2018 IPR005053 MobA/MobL protein AMJ96_PD00654 324ef483dcaea05b6545c50e3d4442b8 1544 SUPERFAMILY SSF52540 494 769 1.75E-34 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00654 324ef483dcaea05b6545c50e3d4442b8 1544 Gene3D G3DSA:3.30.930.30 1 218 1.4E-60 T 12-10-2018 AMJ96_PD00654 324ef483dcaea05b6545c50e3d4442b8 1544 TIGRFAM TIGR02768 TraA_Ti: Ti-type conjugative transfer relaxase TraA 1 770 0.0 T 12-10-2018 IPR014136 Ti-type conjugative transfer relaxase TraA AMJ96_PD00654 324ef483dcaea05b6545c50e3d4442b8 1544 SUPERFAMILY SSF52540 274 552 7.04E-24 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00654 324ef483dcaea05b6545c50e3d4442b8 1544 Gene3D G3DSA:2.30.30.940 629 719 7.9E-57 T 12-10-2018 AMJ96_PD00654 324ef483dcaea05b6545c50e3d4442b8 1544 Pfam PF13604 AAA domain 382 568 6.3E-53 T 12-10-2018 AMJ96_CH03019 57d93b0e8306595e98ad50c37f2a0cae 470 Pfam PF08245 Mur ligase middle domain 103 292 1.3E-48 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMJ96_CH03019 57d93b0e8306595e98ad50c37f2a0cae 470 SUPERFAMILY SSF63418 11 93 8.5E-21 T 12-10-2018 IPR035911 MurE/MurF, N-terminal AMJ96_CH03019 57d93b0e8306595e98ad50c37f2a0cae 470 Gene3D G3DSA:3.40.1190.10 79 311 2.3E-65 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMJ96_CH03019 57d93b0e8306595e98ad50c37f2a0cae 470 SUPERFAMILY SSF53244 319 456 2.56E-31 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMJ96_CH03019 57d93b0e8306595e98ad50c37f2a0cae 470 Pfam PF02875 Mur ligase family, glutamate ligase domain 319 385 2.4E-10 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AMJ96_CH03019 57d93b0e8306595e98ad50c37f2a0cae 470 Pfam PF01225 Mur ligase family, catalytic domain 17 91 3.3E-15 T 12-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AMJ96_CH03019 57d93b0e8306595e98ad50c37f2a0cae 470 Gene3D G3DSA:3.90.190.20 317 462 8.6E-33 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMJ96_CH03019 57d93b0e8306595e98ad50c37f2a0cae 470 Gene3D G3DSA:3.40.1390.10 1 78 2.5E-17 T 12-10-2018 AMJ96_CH03019 57d93b0e8306595e98ad50c37f2a0cae 470 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 11 457 32.189 T 12-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH03019 57d93b0e8306595e98ad50c37f2a0cae 470 SUPERFAMILY SSF53623 98 312 2.22E-54 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMJ96_CH03019 57d93b0e8306595e98ad50c37f2a0cae 470 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 22 456 1.7E-117 T 12-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_PD00391 42cfc950df7be96c459b972fba66705a 454 SMART SM00710 161 187 8.1 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_PD00391 42cfc950df7be96c459b972fba66705a 454 SMART SM00710 188 209 160.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_PD00391 42cfc950df7be96c459b972fba66705a 454 SMART SM00710 248 269 620.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_PD00391 42cfc950df7be96c459b972fba66705a 454 SUPERFAMILY SSF51126 15 356 2.2E-59 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor AMJ96_PD00391 42cfc950df7be96c459b972fba66705a 454 Gene3D G3DSA:2.160.20.10 3 358 2.3E-73 T 12-10-2018 IPR012334 Pectin lyase fold AMJ96_PD00391 42cfc950df7be96c459b972fba66705a 454 Pfam PF00295 Glycosyl hydrolases family 28 82 286 3.3E-20 T 12-10-2018 IPR000743 Glycoside hydrolase, family 28 GO:0004650|GO:0005975 AMJ96_PD00240 ecd3414ae8f075a351bf7584eeb217e8 152 Gene3D G3DSA:3.90.960.10 1 152 4.2E-42 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMJ96_PD00240 ecd3414ae8f075a351bf7584eeb217e8 152 SUPERFAMILY SSF55826 4 152 4.84E-38 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMJ96_PD00240 ecd3414ae8f075a351bf7584eeb217e8 152 Pfam PF04073 Aminoacyl-tRNA editing domain 25 139 2.7E-24 T 12-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMJ96_PD00462 f21333bd408c0f2accc574ee3a5e0b14 375 Gene3D G3DSA:3.50.50.60 4 349 1.4E-68 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00462 f21333bd408c0f2accc574ee3a5e0b14 375 Pfam PF01266 FAD dependent oxidoreductase 4 346 2.0E-44 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_PD00462 f21333bd408c0f2accc574ee3a5e0b14 375 SUPERFAMILY SSF54373 232 314 1.83E-9 T 12-10-2018 AMJ96_PD00462 f21333bd408c0f2accc574ee3a5e0b14 375 Gene3D G3DSA:3.30.9.10 90 313 1.4E-68 T 12-10-2018 AMJ96_PD00462 f21333bd408c0f2accc574ee3a5e0b14 375 SUPERFAMILY SSF51905 2 370 7.12E-39 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH00030 09635e85de1866ff7a32733dadb260c3 861 SUPERFAMILY SSF55874 686 851 1.83E-42 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00030 09635e85de1866ff7a32733dadb260c3 861 SMART SM00387 743 853 8.9E-31 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00030 09635e85de1866ff7a32733dadb260c3 861 Pfam PF12860 PAS fold 373 486 2.2E-9 T 12-10-2018 AMJ96_CH00030 09635e85de1866ff7a32733dadb260c3 861 Pfam PF13188 PAS domain 501 532 0.031 T 12-10-2018 IPR000014 PAS domain AMJ96_CH00030 09635e85de1866ff7a32733dadb260c3 861 SUPERFAMILY SSF47384 614 697 1.41E-17 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH00030 09635e85de1866ff7a32733dadb260c3 861 SUPERFAMILY SSF55785 479 567 7.5E-7 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH00030 09635e85de1866ff7a32733dadb260c3 861 SUPERFAMILY SSF55785 351 411 3.43E-5 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH00030 09635e85de1866ff7a32733dadb260c3 861 Pfam PF00512 His Kinase A (phospho-acceptor) domain 630 697 5.9E-15 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH00030 09635e85de1866ff7a32733dadb260c3 861 Gene3D G3DSA:1.10.287.130 619 699 2.7E-20 T 12-10-2018 AMJ96_CH00030 09635e85de1866ff7a32733dadb260c3 861 PRINTS PR00344 Bacterial sensor protein C-terminal signature 813 831 1.8E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00030 09635e85de1866ff7a32733dadb260c3 861 PRINTS PR00344 Bacterial sensor protein C-terminal signature 780 794 1.8E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00030 09635e85de1866ff7a32733dadb260c3 861 PRINTS PR00344 Bacterial sensor protein C-terminal signature 837 850 1.8E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00030 09635e85de1866ff7a32733dadb260c3 861 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 744 850 1.4E-24 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00030 09635e85de1866ff7a32733dadb260c3 861 Gene3D G3DSA:3.30.565.10 702 855 3.1E-40 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00030 09635e85de1866ff7a32733dadb260c3 861 SMART SM00388 629 697 7.0E-17 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH00030 09635e85de1866ff7a32733dadb260c3 861 Gene3D G3DSA:3.30.450.20 498 618 4.4E-7 T 12-10-2018 AMJ96_CH01319 fd1657cf49376347b5c08837a6f7e162 147 Gene3D G3DSA:3.10.450.50 9 147 3.8E-75 T 12-10-2018 AMJ96_CH01319 fd1657cf49376347b5c08837a6f7e162 147 Pfam PF07080 Protein of unknown function (DUF1348) 6 134 1.0E-67 T 12-10-2018 IPR009783 Protein of unknown function DUF1348 AMJ96_CH01319 fd1657cf49376347b5c08837a6f7e162 147 SUPERFAMILY SSF54427 4 146 1.04E-76 T 12-10-2018 IPR032710 NTF2-like domain superfamily AMJ96_CH03062 8561c85f5186e5734a24248a65ca1e0f 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 289 8.3E-7 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03062 8561c85f5186e5734a24248a65ca1e0f 297 Gene3D G3DSA:1.10.3720.10 14 289 7.5E-29 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03062 8561c85f5186e5734a24248a65ca1e0f 297 SUPERFAMILY SSF161098 17 292 2.8E-33 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00926 c60f5b6aa0fc3132810bc84e65376d65 591 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 287 451 9.0E-24 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMJ96_CH00926 c60f5b6aa0fc3132810bc84e65376d65 591 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 467 585 1.2E-17 T 12-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain AMJ96_CH00926 c60f5b6aa0fc3132810bc84e65376d65 591 Gene3D G3DSA:1.20.140.10 293 455 4.8E-48 T 12-10-2018 AMJ96_CH00926 c60f5b6aa0fc3132810bc84e65376d65 591 SUPERFAMILY SSF56645 36 270 1.44E-56 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMJ96_CH00926 c60f5b6aa0fc3132810bc84e65376d65 591 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 413 432 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMJ96_CH00926 c60f5b6aa0fc3132810bc84e65376d65 591 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 37 155 2.1E-13 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMJ96_CH00926 c60f5b6aa0fc3132810bc84e65376d65 591 SUPERFAMILY SSF47203 285 461 3.54E-46 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMJ96_CH00926 c60f5b6aa0fc3132810bc84e65376d65 591 Gene3D G3DSA:1.10.540.10 32 157 2.4E-17 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMJ96_CH00926 c60f5b6aa0fc3132810bc84e65376d65 591 Gene3D G3DSA:2.40.110.10 158 292 5.4E-26 T 12-10-2018 AMJ96_CH00926 c60f5b6aa0fc3132810bc84e65376d65 591 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 160 268 4.5E-15 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 Gene3D G3DSA:3.30.70.270 311 491 7.7E-55 T 12-10-2018 AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 SUPERFAMILY SSF55785 49 161 4.36E-19 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 SMART SM00267 306 478 2.9E-51 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 Gene3D G3DSA:2.10.70.100 241 285 1.4E-7 T 12-10-2018 AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 Gene3D G3DSA:2.10.70.100 113 160 2.6E-8 T 12-10-2018 AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 Gene3D G3DSA:3.20.20.450 492 737 1.8E-73 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 Pfam PF00990 Diguanylate cyclase, GGDEF domain 317 474 1.8E-42 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 313 476 5.1E-43 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 63 165 1.3E-9 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 170 292 1.3E-6 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 SMART SM00091 39 108 0.31 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 SMART SM00091 170 238 0.62 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 SMART SM00052 488 731 3.2E-89 T 12-10-2018 IPR001633 EAL domain AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 Pfam PF08447 PAS fold 63 151 7.0E-18 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 Pfam PF08447 PAS fold 193 277 2.1E-12 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 SUPERFAMILY SSF55785 155 283 1.92E-18 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 SMART SM00086 244 285 3.8 T 12-10-2018 IPR001610 PAC motif AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 SMART SM00086 115 158 3.5E-6 T 12-10-2018 IPR001610 PAC motif AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 SUPERFAMILY SSF55073 322 479 3.53E-45 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 Gene3D G3DSA:3.30.450.20 166 237 8.5E-15 T 12-10-2018 AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 Gene3D G3DSA:3.30.450.20 34 106 1.5E-14 T 12-10-2018 AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 Pfam PF00563 EAL domain 496 726 3.1E-60 T 12-10-2018 IPR001633 EAL domain AMJ96_CH02339 d07c938a8731d5f679416b2c558fd5c7 765 SUPERFAMILY SSF141868 494 736 9.15E-67 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH01954 78d38cf40b6084c08063b9810e28a7dc 706 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 576 594 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site AMJ96_CH01954 78d38cf40b6084c08063b9810e28a7dc 706 SMART SM00710 215 236 1200.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01954 78d38cf40b6084c08063b9810e28a7dc 706 SMART SM00710 172 202 1100.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01954 78d38cf40b6084c08063b9810e28a7dc 706 SMART SM00710 238 283 1400.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01954 78d38cf40b6084c08063b9810e28a7dc 706 SMART SM00710 134 160 790.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01954 78d38cf40b6084c08063b9810e28a7dc 706 SMART SM00710 111 133 2.2 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01954 78d38cf40b6084c08063b9810e28a7dc 706 SMART SM00710 88 110 92.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01954 78d38cf40b6084c08063b9810e28a7dc 706 Pfam PF13229 Right handed beta helix region 104 274 7.2E-13 T 12-10-2018 IPR039448 Right handed beta helix domain AMJ96_CH01954 78d38cf40b6084c08063b9810e28a7dc 706 Gene3D G3DSA:2.150.10.10 516 700 2.6E-39 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH01954 78d38cf40b6084c08063b9810e28a7dc 706 Gene3D G3DSA:2.150.10.10 413 515 2.2E-8 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH01954 78d38cf40b6084c08063b9810e28a7dc 706 PRINTS PR00313 NodO calcium binding signature 488 499 1.4E-7 T 12-10-2018 AMJ96_CH01954 78d38cf40b6084c08063b9810e28a7dc 706 PRINTS PR00313 NodO calcium binding signature 598 607 1.4E-7 T 12-10-2018 AMJ96_CH01954 78d38cf40b6084c08063b9810e28a7dc 706 PRINTS PR00313 NodO calcium binding signature 571 579 1.4E-7 T 12-10-2018 AMJ96_CH01954 78d38cf40b6084c08063b9810e28a7dc 706 PRINTS PR00313 NodO calcium binding signature 500 508 1.4E-7 T 12-10-2018 AMJ96_CH01954 78d38cf40b6084c08063b9810e28a7dc 706 Gene3D G3DSA:2.160.20.10 1 395 4.4E-56 T 12-10-2018 IPR012334 Pectin lyase fold AMJ96_CH01954 78d38cf40b6084c08063b9810e28a7dc 706 SUPERFAMILY SSF51120 482 696 1.05E-30 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH01954 78d38cf40b6084c08063b9810e28a7dc 706 SUPERFAMILY SSF51126 2 394 1.63E-53 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor AMJ96_CH02158 e4e7089365c2773bdde3a5faa6695a61 600 Gene3D G3DSA:3.10.105.10 316 575 2.0E-226 T 12-10-2018 AMJ96_CH02158 e4e7089365c2773bdde3a5faa6695a61 600 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 103 511 4.0E-78 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_CH02158 e4e7089365c2773bdde3a5faa6695a61 600 Gene3D G3DSA:3.40.190.10 24 595 2.0E-226 T 12-10-2018 AMJ96_CH02158 e4e7089365c2773bdde3a5faa6695a61 600 SUPERFAMILY SSF53850 47 595 1.14E-113 T 12-10-2018 AMJ96_CH02158 e4e7089365c2773bdde3a5faa6695a61 600 PIRSF PIRSF002741 6 600 2.0E-90 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_CH00474 a8409596649fa996fcc7e61389dd7af2 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 58 9.3E-12 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00474 a8409596649fa996fcc7e61389dd7af2 193 Gene3D G3DSA:1.10.357.10 69 191 1.9E-10 T 12-10-2018 AMJ96_CH00474 a8409596649fa996fcc7e61389dd7af2 193 SUPERFAMILY SSF48498 79 188 6.23E-9 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH00474 a8409596649fa996fcc7e61389dd7af2 193 Gene3D G3DSA:1.10.10.60 1 65 1.7E-24 T 12-10-2018 AMJ96_CH00474 a8409596649fa996fcc7e61389dd7af2 193 SUPERFAMILY SSF46689 3 79 2.57E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PB00428 24d34f3e7a489e79704783aae903115d 184 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 17 184 29.379 T 12-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 AMJ96_PB00428 24d34f3e7a489e79704783aae903115d 184 SUPERFAMILY SSF53271 13 178 2.56E-36 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like AMJ96_PB00428 24d34f3e7a489e79704783aae903115d 184 Gene3D G3DSA:3.40.50.2020 11 184 1.4E-47 T 12-10-2018 AMJ96_PB00428 24d34f3e7a489e79704783aae903115d 184 Pfam PF00156 Phosphoribosyl transferase domain 49 162 6.4E-15 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMJ96_CH01592 830dfa7b0c4724047aae6e214f195008 389 Gene3D G3DSA:3.40.50.2000 3 199 3.8E-22 T 12-10-2018 AMJ96_CH01592 830dfa7b0c4724047aae6e214f195008 389 Gene3D G3DSA:3.40.50.2000 200 355 5.7E-26 T 12-10-2018 AMJ96_CH01592 830dfa7b0c4724047aae6e214f195008 389 SUPERFAMILY SSF53756 11 377 1.26E-60 T 12-10-2018 AMJ96_CH01592 830dfa7b0c4724047aae6e214f195008 389 Pfam PF13439 Glycosyltransferase Family 4 17 189 2.7E-22 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMJ96_CH01592 830dfa7b0c4724047aae6e214f195008 389 Pfam PF00534 Glycosyl transferases group 1 201 343 5.1E-21 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 AMJ96_PB00172 635b99f421dfa935c65e76d7864ffae3 209 PIRSF PIRSF000709 2 194 4.0E-9 T 12-10-2018 AMJ96_PB00172 635b99f421dfa935c65e76d7864ffae3 209 Gene3D G3DSA:3.40.50.1240 1 207 1.0E-56 T 12-10-2018 IPR029033 Histidine phosphatase superfamily AMJ96_PB00172 635b99f421dfa935c65e76d7864ffae3 209 SUPERFAMILY SSF53254 1 202 2.51E-55 T 12-10-2018 IPR029033 Histidine phosphatase superfamily AMJ96_PB00172 635b99f421dfa935c65e76d7864ffae3 209 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 3 122 2.4E-36 T 12-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 AMJ96_PB00172 635b99f421dfa935c65e76d7864ffae3 209 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 195 3.5E-37 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMJ96_PB00172 635b99f421dfa935c65e76d7864ffae3 209 SMART SM00855 3 164 2.8E-21 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMJ96_PB00172 635b99f421dfa935c65e76d7864ffae3 209 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 1 203 32.353 T 12-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 AMJ96_PB00172 635b99f421dfa935c65e76d7864ffae3 209 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 12-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 AMJ96_PD00089 baa3f0b61bdddab256f3e6c0a392718d 118 Gene3D G3DSA:3.40.50.2300 1 118 2.9E-23 T 12-10-2018 AMJ96_PD00089 baa3f0b61bdddab256f3e6c0a392718d 118 SUPERFAMILY SSF52172 3 116 1.21E-22 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PD00089 baa3f0b61bdddab256f3e6c0a392718d 118 SMART SM00448 3 113 1.1E-15 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00089 baa3f0b61bdddab256f3e6c0a392718d 118 Pfam PF00072 Response regulator receiver domain 5 113 3.1E-15 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02839 98ce03b14f5c9ae7ce7bd1cee41ed4fd 340 SUPERFAMILY SSF51679 7 333 3.93E-55 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_CH02839 98ce03b14f5c9ae7ce7bd1cee41ed4fd 340 Gene3D G3DSA:3.20.20.30 8 318 1.5E-43 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_CH02839 98ce03b14f5c9ae7ce7bd1cee41ed4fd 340 Pfam PF00296 Luciferase-like monooxygenase 8 257 1.1E-24 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMJ96_CH02145 5971a668ef445d9532843e337f383a0c 506 Pfam PF00005 ABC transporter 276 429 1.1E-19 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02145 5971a668ef445d9532843e337f383a0c 506 SMART SM00382 284 486 8.4E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02145 5971a668ef445d9532843e337f383a0c 506 SMART SM00382 33 221 5.7E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02145 5971a668ef445d9532843e337f383a0c 506 SUPERFAMILY SSF52540 268 488 6.78E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02145 5971a668ef445d9532843e337f383a0c 506 ProSitePatterns PS00211 ABC transporters family signature. 402 416 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02145 5971a668ef445d9532843e337f383a0c 506 Pfam PF00005 ABC transporter 24 173 2.3E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02145 5971a668ef445d9532843e337f383a0c 506 Gene3D G3DSA:3.40.50.300 256 506 2.5E-46 T 12-10-2018 AMJ96_CH02145 5971a668ef445d9532843e337f383a0c 506 SUPERFAMILY SSF52540 8 232 1.59E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02145 5971a668ef445d9532843e337f383a0c 506 Gene3D G3DSA:3.40.50.300 1 255 6.2E-54 T 12-10-2018 AMJ96_CH00781 93fa24772905070deb06f7e05297f59c 415 SUPERFAMILY SSF54373 271 356 1.49E-7 T 12-10-2018 AMJ96_CH00781 93fa24772905070deb06f7e05297f59c 415 SUPERFAMILY SSF51905 3 413 4.92E-43 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH00781 93fa24772905070deb06f7e05297f59c 415 Gene3D G3DSA:3.50.50.60 6 52 2.1E-11 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH00781 93fa24772905070deb06f7e05297f59c 415 Gene3D G3DSA:3.30.9.10 135 355 8.1E-42 T 12-10-2018 AMJ96_CH00781 93fa24772905070deb06f7e05297f59c 415 Pfam PF01266 FAD dependent oxidoreductase 5 395 7.9E-55 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_CH00781 93fa24772905070deb06f7e05297f59c 415 Gene3D G3DSA:3.50.50.60 108 396 8.1E-42 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PB00348 23c6203dc05081bddc43c957c65465b9 423 SUPERFAMILY SSF102114 48 418 2.09E-91 T 12-10-2018 AMJ96_PB00348 23c6203dc05081bddc43c957c65465b9 423 Pfam PF04055 Radical SAM superfamily 65 200 1.7E-14 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMJ96_PB00348 23c6203dc05081bddc43c957c65465b9 423 SMART SM00729 41 244 1.4E-35 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMJ96_PB00348 23c6203dc05081bddc43c957c65465b9 423 Pfam PF06969 HemN C-terminal domain 338 404 2.5E-10 T 12-10-2018 IPR010723 HemN, C-terminal AMJ96_PB00348 23c6203dc05081bddc43c957c65465b9 423 Gene3D G3DSA:3.80.30.20 45 338 5.5E-76 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMJ96_PB00348 23c6203dc05081bddc43c957c65465b9 423 Gene3D G3DSA:1.10.10.920 339 422 1.7E-14 T 12-10-2018 AMJ96_PB00348 23c6203dc05081bddc43c957c65465b9 423 PIRSF PIRSF000167 44 422 1.3E-122 T 12-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 AMJ96_CH02162 261a83a9d492cb3b8c91e24982fcf152 112 PRINTS PR00340 P-II protein signature 52 75 8.4E-45 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMJ96_CH02162 261a83a9d492cb3b8c91e24982fcf152 112 PRINTS PR00340 P-II protein signature 83 103 8.4E-45 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMJ96_CH02162 261a83a9d492cb3b8c91e24982fcf152 112 PRINTS PR00340 P-II protein signature 2 17 8.4E-45 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMJ96_CH02162 261a83a9d492cb3b8c91e24982fcf152 112 PRINTS PR00340 P-II protein signature 23 41 8.4E-45 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMJ96_CH02162 261a83a9d492cb3b8c91e24982fcf152 112 SUPERFAMILY SSF54913 1 112 2.28E-46 T 12-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta AMJ96_CH02162 261a83a9d492cb3b8c91e24982fcf152 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 12-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 AMJ96_CH02162 261a83a9d492cb3b8c91e24982fcf152 112 PIRSF PIRSF039144 1 112 3.3E-55 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMJ96_CH02162 261a83a9d492cb3b8c91e24982fcf152 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.6E-43 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMJ96_CH02162 261a83a9d492cb3b8c91e24982fcf152 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 12-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 AMJ96_CH02162 261a83a9d492cb3b8c91e24982fcf152 112 SMART SM00938 4 105 2.2E-67 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AMJ96_CH02162 261a83a9d492cb3b8c91e24982fcf152 112 Gene3D G3DSA:3.30.70.120 1 112 1.1E-47 T 12-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AMJ96_PB00155 182c1300f91526dc460932e841d27ad9 294 SMART SM00849 62 265 1.7E-17 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_PB00155 182c1300f91526dc460932e841d27ad9 294 SUPERFAMILY SSF56281 7 285 1.57E-48 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_PB00155 182c1300f91526dc460932e841d27ad9 294 Gene3D G3DSA:3.60.15.10 6 289 6.8E-82 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_PB00155 182c1300f91526dc460932e841d27ad9 294 Pfam PF00753 Metallo-beta-lactamase superfamily 63 255 5.1E-20 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_PD00472 394b7c63aba3182a9a85715d4897f751 846 SMART SM00304 446 499 6.7E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00472 394b7c63aba3182a9a85715d4897f751 846 SMART SM00304 527 579 6.9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00472 394b7c63aba3182a9a85715d4897f751 846 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 642 795 3.1E-47 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_PD00472 394b7c63aba3182a9a85715d4897f751 846 SUPERFAMILY SSF58104 559 828 1.27E-60 T 12-10-2018 AMJ96_PD00472 394b7c63aba3182a9a85715d4897f751 846 Pfam PF00672 HAMP domain 450 494 3.0E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00472 394b7c63aba3182a9a85715d4897f751 846 SMART SM00283 580 827 3.4E-87 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_PD00472 394b7c63aba3182a9a85715d4897f751 846 SUPERFAMILY SSF158472 449 494 1.83E-8 T 12-10-2018 AMJ96_PD00472 394b7c63aba3182a9a85715d4897f751 846 Gene3D G3DSA:1.20.1480.50 407 504 1.1E-12 T 12-10-2018 AMJ96_PD00472 394b7c63aba3182a9a85715d4897f751 846 Gene3D G3DSA:1.10.287.950 530 829 3.9E-72 T 12-10-2018 AMJ96_CH03979 f1699eb4f8037cb0a3c116ade6a90e24 502 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 290 301 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMJ96_CH03979 f1699eb4f8037cb0a3c116ade6a90e24 502 Gene3D G3DSA:3.40.605.10 19 488 5.6E-163 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_CH03979 f1699eb4f8037cb0a3c116ade6a90e24 502 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 257 264 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMJ96_CH03979 f1699eb4f8037cb0a3c116ade6a90e24 502 Pfam PF00171 Aldehyde dehydrogenase family 23 489 1.3E-167 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_CH03979 f1699eb4f8037cb0a3c116ade6a90e24 502 SUPERFAMILY SSF53720 9 494 7.33E-162 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_CH03979 f1699eb4f8037cb0a3c116ade6a90e24 502 Gene3D G3DSA:3.40.309.10 262 460 5.6E-163 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_CH02387 e7c1223cdf64c55a344d85ffed8b82d6 362 Pfam PF00154 recA bacterial DNA recombination protein 18 280 9.1E-148 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMJ96_CH02387 e7c1223cdf64c55a344d85ffed8b82d6 362 Gene3D G3DSA:3.40.50.300 39 280 4.7E-83 T 12-10-2018 AMJ96_CH02387 e7c1223cdf64c55a344d85ffed8b82d6 362 Gene3D G3DSA:3.30.250.10 281 340 4.9E-26 T 12-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal AMJ96_CH02387 e7c1223cdf64c55a344d85ffed8b82d6 362 Hamap MF_00268 Protein RecA [recA]. 16 341 51.863 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMJ96_CH02387 e7c1223cdf64c55a344d85ffed8b82d6 362 ProSitePatterns PS00321 recA signature. 225 233 - T 12-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 AMJ96_CH02387 e7c1223cdf64c55a344d85ffed8b82d6 362 SUPERFAMILY SSF54752 280 337 1.44E-21 T 12-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal AMJ96_CH02387 e7c1223cdf64c55a344d85ffed8b82d6 362 SMART SM00382 69 240 7.6E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02387 e7c1223cdf64c55a344d85ffed8b82d6 362 SUPERFAMILY SSF52540 18 279 9.39E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02387 e7c1223cdf64c55a344d85ffed8b82d6 362 PRINTS PR00142 RecA protein signature 177 206 1.5E-85 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMJ96_CH02387 e7c1223cdf64c55a344d85ffed8b82d6 362 PRINTS PR00142 RecA protein signature 139 168 1.5E-85 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMJ96_CH02387 e7c1223cdf64c55a344d85ffed8b82d6 362 PRINTS PR00142 RecA protein signature 255 284 1.5E-85 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMJ96_CH02387 e7c1223cdf64c55a344d85ffed8b82d6 362 PRINTS PR00142 RecA protein signature 309 326 1.5E-85 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMJ96_CH02387 e7c1223cdf64c55a344d85ffed8b82d6 362 PRINTS PR00142 RecA protein signature 222 250 1.5E-85 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMJ96_CH02387 e7c1223cdf64c55a344d85ffed8b82d6 362 PRINTS PR00142 RecA protein signature 105 134 1.5E-85 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMJ96_CH02387 e7c1223cdf64c55a344d85ffed8b82d6 362 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 15 335 2.3E-174 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AMJ96_CH00809 5d654c1fb2630e15a129bd6143515ff0 353 Gene3D G3DSA:3.90.25.10 193 341 3.8E-165 T 12-10-2018 AMJ96_CH00809 5d654c1fb2630e15a129bd6143515ff0 353 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 3 343 1.8E-186 T 12-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 AMJ96_CH00809 5d654c1fb2630e15a129bd6143515ff0 353 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 336 1.1E-158 T 12-10-2018 IPR016040 NAD(P)-binding domain AMJ96_CH00809 5d654c1fb2630e15a129bd6143515ff0 353 Gene3D G3DSA:3.40.50.720 5 327 3.8E-165 T 12-10-2018 AMJ96_CH00809 5d654c1fb2630e15a129bd6143515ff0 353 SUPERFAMILY SSF51735 3 342 4.65E-80 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00809 5d654c1fb2630e15a129bd6143515ff0 353 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 3 346 56.827 T 12-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 AMJ96_CH01238 6af42a02e9f250ed7975f1aaf13b4081 277 TIGRFAM TIGR00552 nadE: NAD+ synthetase 23 274 2.3E-63 T 12-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 AMJ96_CH01238 6af42a02e9f250ed7975f1aaf13b4081 277 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 22 274 46.704 T 12-10-2018 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5 AMJ96_CH01238 6af42a02e9f250ed7975f1aaf13b4081 277 SUPERFAMILY SSF52402 8 272 3.94E-76 T 12-10-2018 AMJ96_CH01238 6af42a02e9f250ed7975f1aaf13b4081 277 Gene3D G3DSA:3.40.50.620 3 276 2.2E-74 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH01238 6af42a02e9f250ed7975f1aaf13b4081 277 Pfam PF02540 NAD synthase 27 271 8.4E-60 T 12-10-2018 IPR022310 NAD/GMP synthase AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 SUPERFAMILY SSF89000 840 1016 4.32E-54 T 12-10-2018 AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 SUPERFAMILY SSF51230 1076 1151 1.44E-20 T 12-10-2018 IPR011053 Single hybrid motif AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 Pfam PF02785 Biotin carboxylase C-terminal domain 351 458 1.6E-32 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 Pfam PF02436 Conserved carboxylase domain 835 1034 4.3E-71 T 12-10-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 Gene3D G3DSA:1.10.472.90 827 957 0.0 T 12-10-2018 AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 Gene3D G3DSA:3.10.600.10 505 1067 0.0 T 12-10-2018 AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 SUPERFAMILY SSF52440 2 121 1.51E-39 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 1109 1126 - T 12-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 PIRSF PIRSF001594 1 1153 0.0 T 12-10-2018 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 Gene3D G3DSA:1.10.10.60 958 1003 0.0 T 12-10-2018 AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 SUPERFAMILY SSF51569 532 843 1.2E-82 T 12-10-2018 AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 TIGRFAM TIGR01235 pyruv_carbox: pyruvate carboxylase 5 1152 0.0 T 12-10-2018 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 Gene3D G3DSA:3.30.470.130 1 466 1.0E-207 T 12-10-2018 AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 161 175 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 SUPERFAMILY SSF51246 346 464 2.3E-37 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 Gene3D G3DSA:3.20.20.70 517 826 0.0 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 SMART SM00878 351 458 3.0E-49 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 Pfam PF00682 HMGL-like 540 811 1.1E-27 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 124 327 3.6E-73 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 Gene3D G3DSA:2.40.50.100 1075 1154 4.0E-26 T 12-10-2018 AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 Pfam PF00364 Biotin-requiring enzyme 1086 1150 4.3E-17 T 12-10-2018 IPR000089 Biotin/lipoyl attachment AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 SUPERFAMILY SSF56059 91 339 1.48E-62 T 12-10-2018 AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 295 302 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMJ96_CH04251 94686fffeab8a30c40ccea8d45b133a0 1154 Pfam PF00289 Biotin carboxylase, N-terminal domain 3 118 4.9E-37 T 12-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_CH01832 e606d933205faeb39a95ce3591679df0 885 SUPERFAMILY SSF50692 553 697 1.22E-42 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily AMJ96_CH01832 e606d933205faeb39a95ce3591679df0 885 PIRSF PIRSF036643 2 715 3.7E-147 T 12-10-2018 AMJ96_CH01832 e606d933205faeb39a95ce3591679df0 885 Pfam PF00384 Molybdopterin oxidoreductase 68 481 1.6E-74 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01832 e606d933205faeb39a95ce3591679df0 885 Gene3D G3DSA:3.40.228.10 136 566 6.0E-174 T 12-10-2018 AMJ96_CH01832 e606d933205faeb39a95ce3591679df0 885 Gene3D G3DSA:2.40.40.20 578 698 2.1E-37 T 12-10-2018 AMJ96_CH01832 e606d933205faeb39a95ce3591679df0 885 Pfam PF04324 BFD-like [2Fe-2S] binding domain 829 878 8.9E-12 T 12-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AMJ96_CH01832 e606d933205faeb39a95ce3591679df0 885 Gene3D G3DSA:2.20.25.90 2 56 8.1E-19 T 12-10-2018 AMJ96_CH01832 e606d933205faeb39a95ce3591679df0 885 Gene3D G3DSA:3.40.50.740 71 562 6.0E-174 T 12-10-2018 AMJ96_CH01832 e606d933205faeb39a95ce3591679df0 885 Gene3D G3DSA:1.10.10.1100 829 882 9.2E-10 T 12-10-2018 AMJ96_CH01832 e606d933205faeb39a95ce3591679df0 885 Pfam PF01568 Molydopterin dinucleotide binding domain 581 691 4.5E-28 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 AMJ96_CH01832 e606d933205faeb39a95ce3591679df0 885 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 4 55 1.2E-18 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01832 e606d933205faeb39a95ce3591679df0 885 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 7 24 - T 12-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 AMJ96_CH01832 e606d933205faeb39a95ce3591679df0 885 SMART SM00926 2 56 5.9E-21 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01832 e606d933205faeb39a95ce3591679df0 885 SUPERFAMILY SSF53706 4 568 5.37E-189 T 12-10-2018 AMJ96_CH02688 207a0b33984f250c933b4e4c98fcfc1e 106 SUPERFAMILY SSF55811 20 88 5.0E-5 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_CH02688 207a0b33984f250c933b4e4c98fcfc1e 106 Gene3D G3DSA:3.90.79.10 19 104 1.1E-8 T 12-10-2018 AMJ96_CH01815 90b9cc0b2cfcb6c4f2b430823762bc65 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 1.9E-5 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH01815 90b9cc0b2cfcb6c4f2b430823762bc65 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 1.9E-5 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH01815 90b9cc0b2cfcb6c4f2b430823762bc65 191 SUPERFAMILY SSF48498 86 185 4.28E-21 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH01815 90b9cc0b2cfcb6c4f2b430823762bc65 191 Gene3D G3DSA:1.10.357.10 52 186 7.9E-32 T 12-10-2018 AMJ96_CH01815 90b9cc0b2cfcb6c4f2b430823762bc65 191 SUPERFAMILY SSF46689 2 73 5.13E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH01815 90b9cc0b2cfcb6c4f2b430823762bc65 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 5.3E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH01815 90b9cc0b2cfcb6c4f2b430823762bc65 191 Gene3D G3DSA:1.10.10.60 6 51 3.5E-19 T 12-10-2018 AMJ96_PD00519 ff2070560c1caef374e4b4b66b9a77ca 444 Gene3D G3DSA:3.90.1150.10 28 435 2.2E-144 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_PD00519 ff2070560c1caef374e4b4b66b9a77ca 444 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 254 291 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_PD00519 ff2070560c1caef374e4b4b66b9a77ca 444 Pfam PF00202 Aminotransferase class-III 29 440 9.4E-92 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_PD00519 ff2070560c1caef374e4b4b66b9a77ca 444 Gene3D G3DSA:3.40.640.10 64 346 2.2E-144 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_PD00519 ff2070560c1caef374e4b4b66b9a77ca 444 PIRSF PIRSF000521 23 152 2.4E-6 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_PD00519 ff2070560c1caef374e4b4b66b9a77ca 444 PIRSF PIRSF000521 171 443 9.8E-18 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_PD00519 ff2070560c1caef374e4b4b66b9a77ca 444 SUPERFAMILY SSF53383 12 441 1.53E-118 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH01335 2b68aef874368c89a85cd67c79971730 470 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 355 467 1.1E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH01335 2b68aef874368c89a85cd67c79971730 470 Pfam PF00512 His Kinase A (phospho-acceptor) domain 243 306 2.2E-7 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH01335 2b68aef874368c89a85cd67c79971730 470 Pfam PF00672 HAMP domain 187 236 9.6E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH01335 2b68aef874368c89a85cd67c79971730 470 SMART SM00304 187 240 2.3E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH01335 2b68aef874368c89a85cd67c79971730 470 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 442 3.2E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH01335 2b68aef874368c89a85cd67c79971730 470 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 405 3.2E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH01335 2b68aef874368c89a85cd67c79971730 470 Gene3D G3DSA:1.10.287.130 191 306 2.6E-22 T 12-10-2018 AMJ96_CH01335 2b68aef874368c89a85cd67c79971730 470 SUPERFAMILY SSF158472 189 237 8.37E-8 T 12-10-2018 AMJ96_CH01335 2b68aef874368c89a85cd67c79971730 470 SMART SM00387 351 469 1.7E-28 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH01335 2b68aef874368c89a85cd67c79971730 470 SMART SM00388 241 306 2.6E-8 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH01335 2b68aef874368c89a85cd67c79971730 470 Gene3D G3DSA:3.30.565.10 311 470 5.3E-33 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH01335 2b68aef874368c89a85cd67c79971730 470 SUPERFAMILY SSF47384 224 307 1.22E-15 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH01335 2b68aef874368c89a85cd67c79971730 470 SUPERFAMILY SSF55874 295 467 2.49E-35 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PB00354 e6697896f068a3e496a4ce8a9f4ad73d 135 SMART SM00382 19 128 0.0051 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PB00354 e6697896f068a3e496a4ce8a9f4ad73d 135 SUPERFAMILY SSF52540 8 93 2.02E-15 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PB00354 e6697896f068a3e496a4ce8a9f4ad73d 135 Pfam PF01695 IstB-like ATP binding protein 2 94 2.3E-30 T 12-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 AMJ96_PB00354 e6697896f068a3e496a4ce8a9f4ad73d 135 Gene3D G3DSA:3.40.50.300 2 112 2.2E-20 T 12-10-2018 AMJ96_PC00091 1c50cb921ea721727ab099c7c4d9cc9b 280 Gene3D G3DSA:3.40.190.10 114 231 3.8E-73 T 12-10-2018 AMJ96_PC00091 1c50cb921ea721727ab099c7c4d9cc9b 280 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 32 273 1.9E-51 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PC00091 1c50cb921ea721727ab099c7c4d9cc9b 280 SMART SM00062 28 275 4.6E-45 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PC00091 1c50cb921ea721727ab099c7c4d9cc9b 280 Gene3D G3DSA:3.40.190.10 33 272 3.8E-73 T 12-10-2018 AMJ96_PC00091 1c50cb921ea721727ab099c7c4d9cc9b 280 SUPERFAMILY SSF53850 1 275 1.59E-53 T 12-10-2018 AMJ96_PD00046 2d96917ccfab9800e2e13882b532d3d2 234 SUPERFAMILY SSF48008 101 232 2.04E-23 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00046 2d96917ccfab9800e2e13882b532d3d2 234 Pfam PF07729 FCD domain 109 227 4.6E-20 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00046 2d96917ccfab9800e2e13882b532d3d2 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 76 1.5E-19 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00046 2d96917ccfab9800e2e13882b532d3d2 234 Gene3D G3DSA:1.20.120.530 100 234 4.4E-23 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00046 2d96917ccfab9800e2e13882b532d3d2 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 8.4E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00046 2d96917ccfab9800e2e13882b532d3d2 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 8.4E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00046 2d96917ccfab9800e2e13882b532d3d2 234 SMART SM00345 17 76 1.9E-18 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00046 2d96917ccfab9800e2e13882b532d3d2 234 SMART SM00895 105 227 2.0E-17 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00046 2d96917ccfab9800e2e13882b532d3d2 234 Gene3D G3DSA:1.10.10.10 3 76 2.3E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00046 2d96917ccfab9800e2e13882b532d3d2 234 SUPERFAMILY SSF46785 10 80 2.95E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03340 01aeed0832e402ac9aa585f04d93a1e5 562 Gene3D G3DSA:1.20.58.1830 527 560 8.0E-7 T 12-10-2018 AMJ96_CH03340 01aeed0832e402ac9aa585f04d93a1e5 562 Gene3D G3DSA:2.30.220.10 328 338 8.0E-7 T 12-10-2018 AMJ96_CH03340 01aeed0832e402ac9aa585f04d93a1e5 562 SUPERFAMILY SSF64518 1 562 1.7E-52 T 12-10-2018 AMJ96_CH03340 01aeed0832e402ac9aa585f04d93a1e5 562 Gene3D G3DSA:1.20.1330.10 43 198 6.0E-6 T 12-10-2018 AMJ96_CH03340 01aeed0832e402ac9aa585f04d93a1e5 562 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 135 1.5E-23 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMJ96_CH03340 01aeed0832e402ac9aa585f04d93a1e5 562 Gene3D G3DSA:1.20.1330.10 470 521 8.0E-7 T 12-10-2018 AMJ96_CH03340 01aeed0832e402ac9aa585f04d93a1e5 562 PRINTS PR00207 Flagellin signature 107 130 6.6E-5 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AMJ96_CH03340 01aeed0832e402ac9aa585f04d93a1e5 562 PRINTS PR00207 Flagellin signature 36 53 6.6E-5 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AMJ96_CH03340 01aeed0832e402ac9aa585f04d93a1e5 562 Pfam PF00700 Bacterial flagellin C-terminal helical region 478 561 4.9E-10 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMJ96_CH03340 01aeed0832e402ac9aa585f04d93a1e5 562 Gene3D G3DSA:2.170.280.10 339 469 8.0E-7 T 12-10-2018 AMJ96_CH03700 026218acf89a95ecb034607af3db5002 178 Gene3D G3DSA:3.30.1330.60 53 173 9.1E-38 T 12-10-2018 IPR036737 OmpA-like domain superfamily AMJ96_CH03700 026218acf89a95ecb034607af3db5002 178 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 70 172 4.9E-43 T 12-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 AMJ96_CH03700 026218acf89a95ecb034607af3db5002 178 PRINTS PR01021 OMPA domain signature 118 134 6.3E-16 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMJ96_CH03700 026218acf89a95ecb034607af3db5002 178 PRINTS PR01021 OMPA domain signature 73 95 6.3E-16 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMJ96_CH03700 026218acf89a95ecb034607af3db5002 178 PRINTS PR01021 OMPA domain signature 103 118 6.3E-16 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMJ96_CH03700 026218acf89a95ecb034607af3db5002 178 SUPERFAMILY SSF103088 61 173 8.11E-36 T 12-10-2018 IPR036737 OmpA-like domain superfamily AMJ96_CH03700 026218acf89a95ecb034607af3db5002 178 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 13 173 30.293 T 12-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 AMJ96_CH03700 026218acf89a95ecb034607af3db5002 178 ProSitePatterns PS01068 OmpA-like domain. 105 149 - T 12-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 AMJ96_CH03700 026218acf89a95ecb034607af3db5002 178 Pfam PF00691 OmpA family 72 167 1.1E-21 T 12-10-2018 IPR006665 OmpA-like domain AMJ96_PD00377 d1e10a5fee4ee53b684e16d02a05be3c 257 SUPERFAMILY SSF56112 2 223 2.19E-33 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily AMJ96_PD00377 d1e10a5fee4ee53b684e16d02a05be3c 257 Pfam PF01636 Phosphotransferase enzyme family 112 166 1.1E-10 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase AMJ96_PD00377 d1e10a5fee4ee53b684e16d02a05be3c 257 Gene3D G3DSA:3.90.1200.10 78 234 1.5E-11 T 12-10-2018 AMJ96_CH02798 0a7840c47e8990b3ff2f11d4f793ab99 124 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 14 106 5.9E-25 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMJ96_CH02798 0a7840c47e8990b3ff2f11d4f793ab99 124 SUPERFAMILY SSF51316 1 123 3.66E-32 T 12-10-2018 IPR011057 Mss4-like superfamily AMJ96_CH02798 0a7840c47e8990b3ff2f11d4f793ab99 124 Gene3D G3DSA:3.90.1590.10 1 108 4.1E-13 T 12-10-2018 AMJ96_CH03874 1818399a7720c2165e78eb5d757f0f7f 364 Gene3D G3DSA:3.30.1220.10 234 362 2.6E-30 T 12-10-2018 IPR036627 CobW-like, C-terminal domain superfamily AMJ96_CH03874 1818399a7720c2165e78eb5d757f0f7f 364 SMART SM00833 268 361 4.8E-16 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AMJ96_CH03874 1818399a7720c2165e78eb5d757f0f7f 364 Gene3D G3DSA:3.40.50.300 8 207 8.5E-75 T 12-10-2018 AMJ96_CH03874 1818399a7720c2165e78eb5d757f0f7f 364 SUPERFAMILY SSF52540 9 214 3.53E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03874 1818399a7720c2165e78eb5d757f0f7f 364 SUPERFAMILY SSF90002 275 360 6.54E-26 T 12-10-2018 AMJ96_CH03874 1818399a7720c2165e78eb5d757f0f7f 364 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 12 188 1.2E-59 T 12-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH03874 1818399a7720c2165e78eb5d757f0f7f 364 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 276 360 4.4E-23 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AMJ96_CH02520 dacbefff11cc62c3435d0156e6d8cdcb 343 Pfam PF00248 Aldo/keto reductase family 28 325 3.6E-64 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_CH02520 dacbefff11cc62c3435d0156e6d8cdcb 343 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 126 136 3.6E-5 T 12-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 AMJ96_CH02520 dacbefff11cc62c3435d0156e6d8cdcb 343 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 283 296 3.6E-5 T 12-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 AMJ96_CH02520 dacbefff11cc62c3435d0156e6d8cdcb 343 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 270 282 3.6E-5 T 12-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 AMJ96_CH02520 dacbefff11cc62c3435d0156e6d8cdcb 343 SUPERFAMILY SSF51430 13 327 5.11E-87 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH02520 dacbefff11cc62c3435d0156e6d8cdcb 343 Gene3D G3DSA:3.20.20.100 15 342 3.3E-108 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH02733 c56eb346cb631904c19815d864536143 449 SMART SM00387 346 448 1.9E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH02733 c56eb346cb631904c19815d864536143 449 SUPERFAMILY SSF55874 292 446 1.7E-31 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02733 c56eb346cb631904c19815d864536143 449 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 348 444 3.8E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH02733 c56eb346cb631904c19815d864536143 449 SMART SM00304 190 243 0.0026 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH02733 c56eb346cb631904c19815d864536143 449 SUPERFAMILY SSF47384 227 300 8.24E-11 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH02733 c56eb346cb631904c19815d864536143 449 Gene3D G3DSA:1.10.287.130 195 303 3.1E-17 T 12-10-2018 AMJ96_CH02733 c56eb346cb631904c19815d864536143 449 Gene3D G3DSA:3.30.565.10 305 449 4.8E-31 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02733 c56eb346cb631904c19815d864536143 449 SMART SM00388 244 302 9.6E-5 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH02733 c56eb346cb631904c19815d864536143 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 431 1.4E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02733 c56eb346cb631904c19815d864536143 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 410 1.4E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02733 c56eb346cb631904c19815d864536143 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 382 396 1.4E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00747 1f920b6e7bb6c39bb409a61279fab6a6 431 Gene3D G3DSA:3.30.9.10 131 350 1.6E-66 T 12-10-2018 AMJ96_CH00747 1f920b6e7bb6c39bb409a61279fab6a6 431 Pfam PF01266 FAD dependent oxidoreductase 38 387 3.6E-50 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_CH00747 1f920b6e7bb6c39bb409a61279fab6a6 431 SUPERFAMILY SSF51905 36 425 2.24E-42 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH00747 1f920b6e7bb6c39bb409a61279fab6a6 431 Gene3D G3DSA:3.50.50.60 38 389 1.6E-66 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03163 f965cf2179769ac398847e3f5a143c5d 71 PIRSF PIRSF002599 1 71 1.3E-20 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 AMJ96_CH03163 f965cf2179769ac398847e3f5a143c5d 71 PRINTS PR00050 Cold shock protein signature 5 20 3.3E-11 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_CH03163 f965cf2179769ac398847e3f5a143c5d 71 PRINTS PR00050 Cold shock protein signature 26 35 3.3E-11 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_CH03163 f965cf2179769ac398847e3f5a143c5d 71 PRINTS PR00050 Cold shock protein signature 41 59 3.3E-11 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_CH03163 f965cf2179769ac398847e3f5a143c5d 71 SMART SM00357 4 70 6.2E-24 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 AMJ96_CH03163 f965cf2179769ac398847e3f5a143c5d 71 Gene3D G3DSA:2.40.50.140 2 70 4.0E-26 T 12-10-2018 AMJ96_CH03163 f965cf2179769ac398847e3f5a143c5d 71 ProSitePatterns PS00352 'Cold-shock' domain signature. 16 35 - T 12-10-2018 IPR019844 Cold-shock conserved site AMJ96_CH03163 f965cf2179769ac398847e3f5a143c5d 71 SUPERFAMILY SSF50249 2 69 9.86E-21 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH03163 f965cf2179769ac398847e3f5a143c5d 71 Pfam PF00313 'Cold-shock' DNA-binding domain 4 68 5.2E-23 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_PD00335 3a485239fae13befe5763954a8da3e2c 247 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00335 3a485239fae13befe5763954a8da3e2c 247 Gene3D G3DSA:3.40.50.300 1 246 3.1E-77 T 12-10-2018 AMJ96_PD00335 3a485239fae13befe5763954a8da3e2c 247 SMART SM00382 28 214 1.0E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00335 3a485239fae13befe5763954a8da3e2c 247 Pfam PF00005 ABC transporter 20 165 1.6E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00335 3a485239fae13befe5763954a8da3e2c 247 SUPERFAMILY SSF52540 1 226 4.58E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02535 6d7b97ae66ab5a2f0a4abe6ad613e8ce 483 SUPERFAMILY SSF48179 185 477 5.83E-112 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_CH02535 6d7b97ae66ab5a2f0a4abe6ad613e8ce 483 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 12 178 4.3E-50 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMJ96_CH02535 6d7b97ae66ab5a2f0a4abe6ad613e8ce 483 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 12 476 1.5E-185 T 12-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMJ96_CH02535 6d7b97ae66ab5a2f0a4abe6ad613e8ce 483 PIRSF PIRSF000109 6 482 5.3E-185 T 12-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMJ96_CH02535 6d7b97ae66ab5a2f0a4abe6ad613e8ce 483 SMART SM01350 187 477 1.8E-175 T 12-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMJ96_CH02535 6d7b97ae66ab5a2f0a4abe6ad613e8ce 483 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 187 476 2.7E-112 T 12-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMJ96_CH02535 6d7b97ae66ab5a2f0a4abe6ad613e8ce 483 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 262 274 - T 12-10-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMJ96_CH02535 6d7b97ae66ab5a2f0a4abe6ad613e8ce 483 Gene3D G3DSA:3.40.50.720 3 188 3.8E-51 T 12-10-2018 AMJ96_CH02535 6d7b97ae66ab5a2f0a4abe6ad613e8ce 483 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 366 388 3.5E-79 T 12-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMJ96_CH02535 6d7b97ae66ab5a2f0a4abe6ad613e8ce 483 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 11 34 3.5E-79 T 12-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMJ96_CH02535 6d7b97ae66ab5a2f0a4abe6ad613e8ce 483 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 176 204 3.5E-79 T 12-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMJ96_CH02535 6d7b97ae66ab5a2f0a4abe6ad613e8ce 483 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 258 285 3.5E-79 T 12-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMJ96_CH02535 6d7b97ae66ab5a2f0a4abe6ad613e8ce 483 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 128 153 3.5E-79 T 12-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMJ96_CH02535 6d7b97ae66ab5a2f0a4abe6ad613e8ce 483 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 75 104 3.5E-79 T 12-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMJ96_CH02535 6d7b97ae66ab5a2f0a4abe6ad613e8ce 483 Gene3D G3DSA:1.20.5.320 447 478 2.8E-12 T 12-10-2018 AMJ96_CH02535 6d7b97ae66ab5a2f0a4abe6ad613e8ce 483 Gene3D G3DSA:1.10.1040.10 189 444 2.2E-91 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMJ96_CH02535 6d7b97ae66ab5a2f0a4abe6ad613e8ce 483 SUPERFAMILY SSF51735 11 185 3.49E-49 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00534 2a7fc094ea160bf619959ce63c1b201c 304 PRINTS PR00102 Ornithine carbamoyltransferase signature 280 291 2.0E-29 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMJ96_CH00534 2a7fc094ea160bf619959ce63c1b201c 304 PRINTS PR00102 Ornithine carbamoyltransferase signature 219 229 2.0E-29 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMJ96_CH00534 2a7fc094ea160bf619959ce63c1b201c 304 PRINTS PR00102 Ornithine carbamoyltransferase signature 120 134 2.0E-29 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMJ96_CH00534 2a7fc094ea160bf619959ce63c1b201c 304 PRINTS PR00102 Ornithine carbamoyltransferase signature 47 61 2.0E-29 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMJ96_CH00534 2a7fc094ea160bf619959ce63c1b201c 304 PRINTS PR00102 Ornithine carbamoyltransferase signature 80 93 2.0E-29 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMJ96_CH00534 2a7fc094ea160bf619959ce63c1b201c 304 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMJ96_CH00534 2a7fc094ea160bf619959ce63c1b201c 304 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 3 302 78.378 T 12-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 AMJ96_CH00534 2a7fc094ea160bf619959ce63c1b201c 304 Gene3D G3DSA:3.40.50.1370 134 288 9.0E-123 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMJ96_CH00534 2a7fc094ea160bf619959ce63c1b201c 304 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 4 144 8.4E-50 T 12-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AMJ96_CH00534 2a7fc094ea160bf619959ce63c1b201c 304 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 4 301 7.2E-115 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 AMJ96_CH00534 2a7fc094ea160bf619959ce63c1b201c 304 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 150 299 9.2E-50 T 12-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AMJ96_CH00534 2a7fc094ea160bf619959ce63c1b201c 304 Gene3D G3DSA:3.40.50.1370 12 297 9.0E-123 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMJ96_CH00534 2a7fc094ea160bf619959ce63c1b201c 304 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 131 142 3.7E-29 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMJ96_CH00534 2a7fc094ea160bf619959ce63c1b201c 304 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 3.7E-29 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMJ96_CH00534 2a7fc094ea160bf619959ce63c1b201c 304 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 266 289 3.7E-29 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMJ96_CH00534 2a7fc094ea160bf619959ce63c1b201c 304 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 254 263 3.7E-29 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMJ96_CH00534 2a7fc094ea160bf619959ce63c1b201c 304 SUPERFAMILY SSF53671 2 302 5.76E-105 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMJ96_CH01982 a4330666a1e0dc0c70de6f6acfe54d37 308 SUPERFAMILY SSF46934 4 55 2.82E-20 T 12-10-2018 IPR009060 UBA-like superfamily GO:0005515 AMJ96_CH01982 a4330666a1e0dc0c70de6f6acfe54d37 308 Gene3D G3DSA:1.10.286.20 207 246 4.2E-19 T 12-10-2018 AMJ96_CH01982 a4330666a1e0dc0c70de6f6acfe54d37 308 Pfam PF00889 Elongation factor TS 71 289 1.6E-66 T 12-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 AMJ96_CH01982 a4330666a1e0dc0c70de6f6acfe54d37 308 SUPERFAMILY SSF54713 150 307 8.63E-44 T 12-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AMJ96_CH01982 a4330666a1e0dc0c70de6f6acfe54d37 308 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 307 4.5E-92 T 12-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMJ96_CH01982 a4330666a1e0dc0c70de6f6acfe54d37 308 SUPERFAMILY SSF54713 57 145 2.35E-21 T 12-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AMJ96_CH01982 a4330666a1e0dc0c70de6f6acfe54d37 308 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 12-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMJ96_CH01982 a4330666a1e0dc0c70de6f6acfe54d37 308 Gene3D G3DSA:1.10.8.10 1 56 2.4E-28 T 12-10-2018 AMJ96_CH01982 a4330666a1e0dc0c70de6f6acfe54d37 308 ProSitePatterns PS01127 Elongation factor Ts signature 2. 75 85 - T 12-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMJ96_CH01982 a4330666a1e0dc0c70de6f6acfe54d37 308 Gene3D G3DSA:3.30.479.20 58 161 2.8E-24 T 12-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 AMJ96_CH01982 a4330666a1e0dc0c70de6f6acfe54d37 308 Hamap MF_00050 Elongation factor Ts [tsf]. 1 306 77.762 T 12-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AMJ96_CH02002 c8e43c3fd87bd49b907f044da53ed1ee 348 Gene3D G3DSA:3.40.50.970 2 348 3.1E-135 T 12-10-2018 AMJ96_CH02002 c8e43c3fd87bd49b907f044da53ed1ee 348 TIGRFAM TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 34 347 1.0E-154 T 12-10-2018 IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y GO:0004739|GO:0006086|GO:0043231 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-70268 AMJ96_CH02002 c8e43c3fd87bd49b907f044da53ed1ee 348 SUPERFAMILY SSF52518 29 347 2.16E-109 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_CH02002 c8e43c3fd87bd49b907f044da53ed1ee 348 Pfam PF00676 Dehydrogenase E1 component 42 339 4.5E-109 T 12-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 AMJ96_CH03007 953e34c85718d7eb603a5e7808bbe53e 318 Gene3D G3DSA:3.30.230.20 7 134 6.2E-42 T 12-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 AMJ96_CH03007 953e34c85718d7eb603a5e7808bbe53e 318 Gene3D G3DSA:3.30.1700.10 135 309 2.6E-52 T 12-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 AMJ96_CH03007 953e34c85718d7eb603a5e7808bbe53e 318 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 9 300 2.7E-89 T 12-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 AMJ96_CH03007 953e34c85718d7eb603a5e7808bbe53e 318 SUPERFAMILY SSF54211 8 129 4.48E-36 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_CH03007 953e34c85718d7eb603a5e7808bbe53e 318 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 7 286 39.924 T 12-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 AMJ96_CH03007 953e34c85718d7eb603a5e7808bbe53e 318 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 9 282 2.6E-95 T 12-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 AMJ96_CH03007 953e34c85718d7eb603a5e7808bbe53e 318 SUPERFAMILY SSF54211 140 285 4.55E-42 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_PB00098 4129a3db83c6448b16c648527e2738f2 273 Pfam PF01514 Secretory protein of YscJ/FliF family 22 200 3.5E-25 T 12-10-2018 IPR006182 Secretory protein YscJ/FliF AMJ96_PB00098 4129a3db83c6448b16c648527e2738f2 273 Gene3D G3DSA:3.30.70.1530 35 105 7.4E-14 T 12-10-2018 AMJ96_PB00098 4129a3db83c6448b16c648527e2738f2 273 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 131 144 1.4E-15 T 12-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 AMJ96_PB00098 4129a3db83c6448b16c648527e2738f2 273 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 91 104 1.4E-15 T 12-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 AMJ96_PB00098 4129a3db83c6448b16c648527e2738f2 273 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 39 49 1.4E-15 T 12-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 AMJ96_PB00098 4129a3db83c6448b16c648527e2738f2 273 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 111 126 1.4E-15 T 12-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 AMJ96_PB00098 4129a3db83c6448b16c648527e2738f2 273 TIGRFAM TIGR02544 III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family 20 207 3.8E-64 T 12-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 AMJ96_PB00098 4129a3db83c6448b16c648527e2738f2 273 Gene3D G3DSA:3.30.300.30 108 214 3.6E-27 T 12-10-2018 AMJ96_CH02197 3e4a9194fd0bb0aa410babc4ffcb1487 267 SMART SM00382 43 240 4.1E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02197 3e4a9194fd0bb0aa410babc4ffcb1487 267 Gene3D G3DSA:3.40.50.300 14 266 5.7E-74 T 12-10-2018 AMJ96_CH02197 3e4a9194fd0bb0aa410babc4ffcb1487 267 Pfam PF00005 ABC transporter 34 192 1.3E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02197 3e4a9194fd0bb0aa410babc4ffcb1487 267 SUPERFAMILY SSF52540 19 262 3.96E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02197 3e4a9194fd0bb0aa410babc4ffcb1487 267 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02197 3e4a9194fd0bb0aa410babc4ffcb1487 267 PIRSF PIRSF039085 15 267 4.3E-114 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMJ96_CH01266 cf15d39a25730aa56c1a9a26652d2f25 463 Pfam PF07690 Major Facilitator Superfamily 6 393 4.2E-46 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH01266 cf15d39a25730aa56c1a9a26652d2f25 463 Gene3D G3DSA:1.20.1720.10 1 191 6.2E-48 T 12-10-2018 AMJ96_CH01266 cf15d39a25730aa56c1a9a26652d2f25 463 SUPERFAMILY SSF103473 2 441 3.79E-54 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH01266 cf15d39a25730aa56c1a9a26652d2f25 463 Gene3D G3DSA:1.20.1250.20 251 442 3.1E-14 T 12-10-2018 AMJ96_CH01704 7c9c180c7a0b98b278e389a04c15a58e 126 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 126 3.4E-47 T 12-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01704 7c9c180c7a0b98b278e389a04c15a58e 126 SUPERFAMILY SSF48300 4 62 1.2E-16 T 12-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01704 7c9c180c7a0b98b278e389a04c15a58e 126 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 60 126 2.2E-30 T 12-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01704 7c9c180c7a0b98b278e389a04c15a58e 126 SUPERFAMILY SSF54736 55 126 5.76E-25 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMJ96_CH01704 7c9c180c7a0b98b278e389a04c15a58e 126 Gene3D G3DSA:1.20.5.710 3 55 2.8E-20 T 12-10-2018 AMJ96_CH01704 7c9c180c7a0b98b278e389a04c15a58e 126 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 1 126 24.793 T 12-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01704 7c9c180c7a0b98b278e389a04c15a58e 126 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 61 126 5.0E-18 T 12-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01704 7c9c180c7a0b98b278e389a04c15a58e 126 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 50 2.1E-19 T 12-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01704 7c9c180c7a0b98b278e389a04c15a58e 126 Gene3D G3DSA:3.30.1390.10 56 126 2.8E-31 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMJ96_CH03950 128482b0c2ea2fcd05811188d9261ded 501 Gene3D G3DSA:3.40.50.300 257 491 1.8E-37 T 12-10-2018 AMJ96_CH03950 128482b0c2ea2fcd05811188d9261ded 501 ProSitePatterns PS00211 ABC transporters family signature. 395 409 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03950 128482b0c2ea2fcd05811188d9261ded 501 SUPERFAMILY SSF52540 3 222 1.25E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03950 128482b0c2ea2fcd05811188d9261ded 501 Pfam PF00005 ABC transporter 271 423 2.8E-15 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03950 128482b0c2ea2fcd05811188d9261ded 501 SMART SM00382 28 215 3.3E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03950 128482b0c2ea2fcd05811188d9261ded 501 SMART SM00382 277 472 5.1E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03950 128482b0c2ea2fcd05811188d9261ded 501 Gene3D G3DSA:3.40.50.300 1 238 3.5E-55 T 12-10-2018 AMJ96_CH03950 128482b0c2ea2fcd05811188d9261ded 501 Pfam PF00005 ABC transporter 19 168 2.2E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03950 128482b0c2ea2fcd05811188d9261ded 501 SUPERFAMILY SSF52540 249 475 1.17E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00301 4636b72ab9b293edad6257ee234fdc15 333 SUPERFAMILY SSF109709 158 212 4.32E-5 T 12-10-2018 AMJ96_PD00301 4636b72ab9b293edad6257ee234fdc15 333 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 73 241 1.0E-34 T 12-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 AMJ96_PD00301 4636b72ab9b293edad6257ee234fdc15 333 Pfam PF02195 ParB-like nuclease domain 89 162 3.1E-16 T 12-10-2018 IPR003115 ParB/Sulfiredoxin AMJ96_PD00301 4636b72ab9b293edad6257ee234fdc15 333 Gene3D G3DSA:3.90.1530.30 86 149 1.6E-13 T 12-10-2018 AMJ96_PD00301 4636b72ab9b293edad6257ee234fdc15 333 TIGRFAM TIGR03454 partition_RepB: plasmid partitioning protein RepB 2 329 8.6E-110 T 12-10-2018 IPR017819 Plasmid partitioning protein, RepB AMJ96_PD00301 4636b72ab9b293edad6257ee234fdc15 333 SUPERFAMILY SSF110849 71 165 1.38E-20 T 12-10-2018 IPR036086 ParB/Sulfiredoxin superfamily AMJ96_PD00301 4636b72ab9b293edad6257ee234fdc15 333 Pfam PF07506 RepB plasmid partitioning protein 164 327 7.9E-19 T 12-10-2018 IPR011111 RepB plasmid partition AMJ96_PD00301 4636b72ab9b293edad6257ee234fdc15 333 SMART SM00470 72 163 3.4E-25 T 12-10-2018 IPR003115 ParB/Sulfiredoxin AMJ96_PC00398 54ba85791044c99ee6902717f6ac5cb2 129 SUPERFAMILY SSF55298 3 125 2.83E-36 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMJ96_PC00398 54ba85791044c99ee6902717f6ac5cb2 129 Gene3D G3DSA:3.30.1330.40 5 129 4.5E-35 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMJ96_PC00398 54ba85791044c99ee6902717f6ac5cb2 129 Pfam PF01042 Endoribonuclease L-PSP 19 124 1.9E-27 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 AMJ96_PC00463 d7128f9ee040072ff0cf57872530e2c5 210 SUPERFAMILY SSF63965 4 207 3.27E-73 T 12-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 AMJ96_PC00463 d7128f9ee040072ff0cf57872530e2c5 210 Gene3D G3DSA:3.40.50.10230 1 210 6.0E-86 T 12-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 AMJ96_PC00463 d7128f9ee040072ff0cf57872530e2c5 210 Pfam PF02570 Precorrin-8X methylmutase 13 207 2.4E-72 T 12-10-2018 IPR003722 Cobalamin biosynthesis precorrin-8X methylmutase CobH/CbiC GO:0009236|GO:0016993 AMJ96_CH02927 cde44e3d7d4a21d67d9a087089e50e27 239 TIGRFAM TIGR00035 asp_race: aspartate racemase 2 234 4.8E-71 T 12-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 AMJ96_CH02927 cde44e3d7d4a21d67d9a087089e50e27 239 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 223 3.7E-51 T 12-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMJ96_CH02927 cde44e3d7d4a21d67d9a087089e50e27 239 SUPERFAMILY SSF53681 118 228 6.87E-31 T 12-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMJ96_CH02927 cde44e3d7d4a21d67d9a087089e50e27 239 Gene3D G3DSA:3.40.50.1860 4 223 5.1E-74 T 12-10-2018 AMJ96_CH02927 cde44e3d7d4a21d67d9a087089e50e27 239 SUPERFAMILY SSF53681 1 116 9.81E-32 T 12-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMJ96_CH02927 cde44e3d7d4a21d67d9a087089e50e27 239 Gene3D G3DSA:3.40.50.1860 104 214 5.1E-74 T 12-10-2018 AMJ96_CH02710 d9cf8a29de772039bf3097a43780e75d 125 SMART SM00448 1 108 2.5E-16 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02710 d9cf8a29de772039bf3097a43780e75d 125 SUPERFAMILY SSF52172 1 117 1.99E-18 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH02710 d9cf8a29de772039bf3097a43780e75d 125 Pfam PF00072 Response regulator receiver domain 3 108 8.9E-12 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02710 d9cf8a29de772039bf3097a43780e75d 125 Gene3D G3DSA:3.40.50.2300 1 120 2.4E-28 T 12-10-2018 AMJ96_CH00711 5de801fc035bbc272e89a65e8ea628ef 301 Gene3D G3DSA:1.20.1330.10 42 254 3.7E-14 T 12-10-2018 AMJ96_CH00711 5de801fc035bbc272e89a65e8ea628ef 301 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 137 9.8E-31 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMJ96_CH00711 5de801fc035bbc272e89a65e8ea628ef 301 SUPERFAMILY SSF64518 1 301 1.83E-64 T 12-10-2018 AMJ96_CH00711 5de801fc035bbc272e89a65e8ea628ef 301 PRINTS PR00207 Flagellin signature 107 130 7.1E-6 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AMJ96_CH00711 5de801fc035bbc272e89a65e8ea628ef 301 PRINTS PR00207 Flagellin signature 36 53 7.1E-6 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AMJ96_CH00711 5de801fc035bbc272e89a65e8ea628ef 301 Pfam PF00700 Bacterial flagellin C-terminal helical region 216 300 1.1E-17 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMJ96_CH00711 5de801fc035bbc272e89a65e8ea628ef 301 Gene3D G3DSA:1.10.8.410 255 301 2.9E-5 T 12-10-2018 AMJ96_CH02570 9e0bd39bd6914da4418284db09418813 160 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 91 159 1.2E-20 T 12-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AMJ96_CH02570 9e0bd39bd6914da4418284db09418813 160 Gene3D G3DSA:3.10.50.30 88 160 2.0E-20 T 12-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 AMJ96_CH02570 9e0bd39bd6914da4418284db09418813 160 PIRSF PIRSF006092 14 160 1.5E-22 T 12-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AMJ96_CH02570 9e0bd39bd6914da4418284db09418813 160 SUPERFAMILY SSF54534 90 150 1.7E-16 T 12-10-2018 AMJ96_PC00020 7059ecab152bf887b39ad1f8c3bd2801 346 SUPERFAMILY SSF53822 79 345 3.26E-51 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PC00020 7059ecab152bf887b39ad1f8c3bd2801 346 Pfam PF00356 Bacterial regulatory proteins, lacI family 25 66 4.3E-12 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PC00020 7059ecab152bf887b39ad1f8c3bd2801 346 Gene3D G3DSA:3.40.50.2300 77 166 5.0E-8 T 12-10-2018 AMJ96_PC00020 7059ecab152bf887b39ad1f8c3bd2801 346 SMART SM00354 19 89 1.6E-11 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PC00020 7059ecab152bf887b39ad1f8c3bd2801 346 Gene3D G3DSA:1.10.260.40 12 76 3.5E-16 T 12-10-2018 AMJ96_PC00020 7059ecab152bf887b39ad1f8c3bd2801 346 SUPERFAMILY SSF47413 18 77 3.27E-13 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PC00020 7059ecab152bf887b39ad1f8c3bd2801 346 Pfam PF13377 Periplasmic binding protein-like domain 186 343 1.3E-31 T 12-10-2018 AMJ96_PC00020 7059ecab152bf887b39ad1f8c3bd2801 346 Gene3D G3DSA:3.40.50.2300 169 345 7.8E-42 T 12-10-2018 AMJ96_CH01312 cb32898b5a03ea0950767e0cd1d74462 126 SUPERFAMILY SSF54593 2 124 3.99E-25 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01312 cb32898b5a03ea0950767e0cd1d74462 126 Gene3D G3DSA:3.10.180.10 1 123 2.2E-39 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01312 cb32898b5a03ea0950767e0cd1d74462 126 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 118 5.6E-7 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH02362 605c04b04872d632acb638e7bdeb4054 254 TIGRFAM TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 6 252 4.2E-122 T 12-10-2018 IPR012689 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase GO:0010124|GO:0018802 KEGG: 00350+4.1.2.52 AMJ96_CH02362 605c04b04872d632acb638e7bdeb4054 254 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 18 242 2.4E-52 T 12-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 AMJ96_CH02362 605c04b04872d632acb638e7bdeb4054 254 Gene3D G3DSA:3.20.20.60 2 254 7.2E-83 T 12-10-2018 AMJ96_CH02362 605c04b04872d632acb638e7bdeb4054 254 SUPERFAMILY SSF51621 3 252 1.63E-81 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMJ96_CH00953 fb438d43844a343cbc60c86d7616d84b 367 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 6 201 8.3E-74 T 12-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMJ96_CH00953 fb438d43844a343cbc60c86d7616d84b 367 SUPERFAMILY SSF55821 5 204 7.55E-81 T 12-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily AMJ96_CH00953 fb438d43844a343cbc60c86d7616d84b 367 Gene3D G3DSA:3.90.870.10 1 208 2.0E-88 T 12-10-2018 AMJ96_CH00953 fb438d43844a343cbc60c86d7616d84b 367 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 3 205 37.866 T 12-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMJ96_CH00953 fb438d43844a343cbc60c86d7616d84b 367 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 10 200 1.7E-84 T 12-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMJ96_CH00953 fb438d43844a343cbc60c86d7616d84b 367 SUPERFAMILY SSF142695 207 364 1.83E-41 T 12-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMJ96_CH00953 fb438d43844a343cbc60c86d7616d84b 367 Pfam PF00925 GTP cyclohydrolase II 213 363 5.2E-31 T 12-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMJ96_CH00953 fb438d43844a343cbc60c86d7616d84b 367 PIRSF PIRSF001259 3 367 2.7E-136 T 12-10-2018 AMJ96_CH02017 3c6165f91b06eb8e2794a4f9388f6fb5 483 Pfam PF02954 Bacterial regulatory protein, Fis family 432 472 2.9E-13 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMJ96_CH02017 3c6165f91b06eb8e2794a4f9388f6fb5 483 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 224 239 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AMJ96_CH02017 3c6165f91b06eb8e2794a4f9388f6fb5 483 SMART SM00448 3 114 2.1E-30 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02017 3c6165f91b06eb8e2794a4f9388f6fb5 483 Pfam PF00158 Sigma-54 interaction domain 138 304 2.5E-70 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMJ96_CH02017 3c6165f91b06eb8e2794a4f9388f6fb5 483 SUPERFAMILY SSF52172 4 182 6.26E-40 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH02017 3c6165f91b06eb8e2794a4f9388f6fb5 483 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 5 472 6.3E-211 T 12-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 AMJ96_CH02017 3c6165f91b06eb8e2794a4f9388f6fb5 483 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 455 475 8.5E-13 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMJ96_CH02017 3c6165f91b06eb8e2794a4f9388f6fb5 483 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 438 455 8.5E-13 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMJ96_CH02017 3c6165f91b06eb8e2794a4f9388f6fb5 483 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 162 175 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMJ96_CH02017 3c6165f91b06eb8e2794a4f9388f6fb5 483 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 350 359 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AMJ96_CH02017 3c6165f91b06eb8e2794a4f9388f6fb5 483 SUPERFAMILY SSF46689 350 474 1.3E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02017 3c6165f91b06eb8e2794a4f9388f6fb5 483 SMART SM00382 158 301 1.4E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02017 3c6165f91b06eb8e2794a4f9388f6fb5 483 Gene3D G3DSA:1.10.8.60 310 385 1.7E-23 T 12-10-2018 AMJ96_CH02017 3c6165f91b06eb8e2794a4f9388f6fb5 483 Pfam PF00072 Response regulator receiver domain 5 113 1.6E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02017 3c6165f91b06eb8e2794a4f9388f6fb5 483 SUPERFAMILY SSF52540 138 378 4.64E-74 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02017 3c6165f91b06eb8e2794a4f9388f6fb5 483 Gene3D G3DSA:3.40.50.300 131 309 1.9E-66 T 12-10-2018 AMJ96_CH02017 3c6165f91b06eb8e2794a4f9388f6fb5 483 Gene3D G3DSA:1.10.10.60 395 474 8.9E-21 T 12-10-2018 AMJ96_CH02017 3c6165f91b06eb8e2794a4f9388f6fb5 483 Gene3D G3DSA:3.40.50.2300 1 130 1.1E-31 T 12-10-2018 AMJ96_PD00132 eeb059c7d68c07f497d35083b656ec4b 309 SUPERFAMILY SSF46785 5 117 4.75E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00132 eeb059c7d68c07f497d35083b656ec4b 309 SUPERFAMILY SSF53850 98 294 7.96E-25 T 12-10-2018 AMJ96_PD00132 eeb059c7d68c07f497d35083b656ec4b 309 Gene3D G3DSA:3.40.190.10 106 282 2.6E-38 T 12-10-2018 AMJ96_PD00132 eeb059c7d68c07f497d35083b656ec4b 309 Pfam PF03466 LysR substrate binding domain 99 291 3.4E-22 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PD00132 eeb059c7d68c07f497d35083b656ec4b 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 9.3E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00132 eeb059c7d68c07f497d35083b656ec4b 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 9.3E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00132 eeb059c7d68c07f497d35083b656ec4b 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 9.3E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00132 eeb059c7d68c07f497d35083b656ec4b 309 Gene3D G3DSA:3.40.190.10 163 261 2.6E-38 T 12-10-2018 AMJ96_PD00132 eeb059c7d68c07f497d35083b656ec4b 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 8.2E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00132 eeb059c7d68c07f497d35083b656ec4b 309 Gene3D G3DSA:1.10.10.10 10 102 1.6E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00269 b1b01053315b1454c98a81329c87ed0a 170 Pfam PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP 4 162 1.1E-66 T 12-10-2018 IPR010319 Transglutaminase-like cysteine peptidase, predicted AMJ96_CH00269 b1b01053315b1454c98a81329c87ed0a 170 Gene3D G3DSA:3.10.620.30 30 166 9.3E-26 T 12-10-2018 AMJ96_CH03626 9bcb1aedb57ec0f599de5121582ca97e 169 PIRSF PIRSF000216 1 165 2.7E-59 T 12-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03626 9bcb1aedb57ec0f599de5121582ca97e 169 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 108 126 - T 12-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03626 9bcb1aedb57ec0f599de5121582ca97e 169 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 7 150 6.1E-53 T 12-10-2018 AMJ96_CH03626 9bcb1aedb57ec0f599de5121582ca97e 169 Gene3D G3DSA:1.10.10.1590 2 68 2.3E-21 T 12-10-2018 AMJ96_CH03626 9bcb1aedb57ec0f599de5121582ca97e 169 SUPERFAMILY SSF52833 3 151 3.35E-51 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH03626 9bcb1aedb57ec0f599de5121582ca97e 169 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 6 150 5.0E-58 T 12-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03626 9bcb1aedb57ec0f599de5121582ca97e 169 Gene3D G3DSA:3.40.30.10 69 164 2.0E-27 T 12-10-2018 AMJ96_CH04138 ead3ce19af23330773e6e07f2322ec59 994 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 13 52 9.0E-19 T 12-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMJ96_CH04138 ead3ce19af23330773e6e07f2322ec59 994 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 95 992 0.0 T 12-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMJ96_CH04138 ead3ce19af23330773e6e07f2322ec59 994 SUPERFAMILY SSF52518 153 583 6.96E-92 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_CH04138 ead3ce19af23330773e6e07f2322ec59 994 Gene3D G3DSA:1.10.287.1150 114 197 9.0E-22 T 12-10-2018 AMJ96_CH04138 ead3ce19af23330773e6e07f2322ec59 994 Gene3D G3DSA:3.40.50.12470 599 856 7.0E-173 T 12-10-2018 AMJ96_CH04138 ead3ce19af23330773e6e07f2322ec59 994 Pfam PF00676 Dehydrogenase E1 component 246 570 1.1E-59 T 12-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 AMJ96_CH04138 ead3ce19af23330773e6e07f2322ec59 994 SUPERFAMILY SSF52518 623 839 6.31E-52 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_CH04138 ead3ce19af23330773e6e07f2322ec59 994 PIRSF PIRSF000157 1 994 0.0 T 12-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMJ96_CH04138 ead3ce19af23330773e6e07f2322ec59 994 Pfam PF02779 Transketolase, pyrimidine binding domain 639 834 1.9E-66 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMJ96_CH04138 ead3ce19af23330773e6e07f2322ec59 994 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 838 992 3.1E-54 T 12-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AMJ96_CH04138 ead3ce19af23330773e6e07f2322ec59 994 SMART SM00861 640 833 2.6E-62 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AMJ96_CH04138 ead3ce19af23330773e6e07f2322ec59 994 Gene3D G3DSA:3.40.50.11610 776 990 7.0E-173 T 12-10-2018 AMJ96_CH04138 ead3ce19af23330773e6e07f2322ec59 994 Gene3D G3DSA:3.40.50.970 198 574 2.4E-149 T 12-10-2018 AMJ96_CH01298 c65481a3d3d528d6f373b201efc532d4 318 Gene3D G3DSA:1.10.101.10 241 315 1.1E-9 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMJ96_CH01298 c65481a3d3d528d6f373b201efc532d4 318 Gene3D G3DSA:1.10.101.10 132 204 9.5E-13 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMJ96_CH01298 c65481a3d3d528d6f373b201efc532d4 318 SUPERFAMILY SSF47090 259 313 3.14E-12 T 12-10-2018 IPR036365 PGBD-like superfamily AMJ96_CH01298 c65481a3d3d528d6f373b201efc532d4 318 Pfam PF01471 Putative peptidoglycan binding domain 145 199 9.5E-11 T 12-10-2018 IPR002477 Peptidoglycan binding-like AMJ96_CH01298 c65481a3d3d528d6f373b201efc532d4 318 Pfam PF01471 Putative peptidoglycan binding domain 260 312 1.2E-10 T 12-10-2018 IPR002477 Peptidoglycan binding-like AMJ96_CH01298 c65481a3d3d528d6f373b201efc532d4 318 SUPERFAMILY SSF47090 142 200 1.1E-13 T 12-10-2018 IPR036365 PGBD-like superfamily AMJ96_CH04381 ca23219510a3ea7609822bf7fd0bccf3 180 PIRSF PIRSF004638 35 180 3.6E-65 T 12-10-2018 IPR005265 Uncharacterised protein family UPF0093 AMJ96_CH04381 ca23219510a3ea7609822bf7fd0bccf3 180 Pfam PF03653 Uncharacterised protein family (UPF0093) 40 180 3.6E-59 T 12-10-2018 IPR005265 Uncharacterised protein family UPF0093 AMJ96_CH04381 ca23219510a3ea7609822bf7fd0bccf3 180 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 42 180 7.0E-50 T 12-10-2018 IPR005265 Uncharacterised protein family UPF0093 AMJ96_PA00177 b4fa5b5cbc7fd22d4456ab0802e0ea5a 396 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 67 81 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMJ96_PA00177 b4fa5b5cbc7fd22d4456ab0802e0ea5a 396 SUPERFAMILY SSF50129 4 187 2.28E-60 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_PA00177 b4fa5b5cbc7fd22d4456ab0802e0ea5a 396 Gene3D G3DSA:3.90.180.10 12 377 2.8E-133 T 12-10-2018 AMJ96_PA00177 b4fa5b5cbc7fd22d4456ab0802e0ea5a 396 TIGRFAM TIGR02819 fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent 3 391 7.3E-215 T 12-10-2018 IPR014184 Formaldehyde dehydrogenase, glutathione-independent GO:0016491|GO:0055114 AMJ96_PA00177 b4fa5b5cbc7fd22d4456ab0802e0ea5a 396 SUPERFAMILY SSF51735 162 352 3.22E-63 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PA00177 b4fa5b5cbc7fd22d4456ab0802e0ea5a 396 Pfam PF00107 Zinc-binding dehydrogenase 197 266 1.2E-8 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_PA00177 b4fa5b5cbc7fd22d4456ab0802e0ea5a 396 Gene3D G3DSA:3.40.50.720 178 340 2.8E-133 T 12-10-2018 AMJ96_PA00177 b4fa5b5cbc7fd22d4456ab0802e0ea5a 396 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 35 144 3.9E-22 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_CH00340 1e221555143ab4227703fb98947aedd3 320 Gene3D G3DSA:3.40.50.1100 16 310 1.2E-121 T 12-10-2018 AMJ96_CH00340 1e221555143ab4227703fb98947aedd3 320 TIGRFAM TIGR01139 cysK: cysteine synthase A 14 315 1.4E-133 T 12-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AMJ96_CH00340 1e221555143ab4227703fb98947aedd3 320 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 14 303 2.5E-66 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMJ96_CH00340 1e221555143ab4227703fb98947aedd3 320 SUPERFAMILY SSF53686 9 315 2.62E-101 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMJ96_CH00340 1e221555143ab4227703fb98947aedd3 320 Gene3D G3DSA:3.40.50.1100 54 156 1.2E-121 T 12-10-2018 AMJ96_CH00340 1e221555143ab4227703fb98947aedd3 320 TIGRFAM TIGR01136 cysKM: cysteine synthase 14 315 5.6E-129 T 12-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AMJ96_PD00103 de395fd0d0e3cb14f629f6b14cc2639b 299 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 293 5.8E-19 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00103 de395fd0d0e3cb14f629f6b14cc2639b 299 SUPERFAMILY SSF161098 27 294 1.02E-62 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00103 de395fd0d0e3cb14f629f6b14cc2639b 299 Gene3D G3DSA:1.10.3720.10 24 286 1.4E-56 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03722 a50d068b4ad8b044bea9f01700642bf7 168 PRINTS PR00502 NUDIX hydrolase family signature 55 70 2.8E-7 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMJ96_CH03722 a50d068b4ad8b044bea9f01700642bf7 168 PRINTS PR00502 NUDIX hydrolase family signature 41 55 2.8E-7 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMJ96_CH03722 a50d068b4ad8b044bea9f01700642bf7 168 SUPERFAMILY SSF55811 18 131 8.12E-25 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_CH03722 a50d068b4ad8b044bea9f01700642bf7 168 Pfam PF00293 NUDIX domain 18 133 6.8E-14 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMJ96_CH03722 a50d068b4ad8b044bea9f01700642bf7 168 ProSitePatterns PS00893 Nudix box signature. 46 67 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMJ96_CH03722 a50d068b4ad8b044bea9f01700642bf7 168 Gene3D G3DSA:3.90.79.10 2 161 5.1E-34 T 12-10-2018 AMJ96_CH00422 53dbefb98f6f6a20306e56645ae40440 258 SUPERFAMILY SSF52540 22 254 3.08E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00422 53dbefb98f6f6a20306e56645ae40440 258 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 22 258 5.0E-115 T 12-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 AMJ96_CH00422 53dbefb98f6f6a20306e56645ae40440 258 Gene3D G3DSA:3.40.50.300 21 258 4.3E-68 T 12-10-2018 AMJ96_CH00422 53dbefb98f6f6a20306e56645ae40440 258 SMART SM00382 46 239 1.4E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00422 53dbefb98f6f6a20306e56645ae40440 258 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00422 53dbefb98f6f6a20306e56645ae40440 258 Pfam PF00005 ABC transporter 38 183 9.4E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00437 befeacb8cbceaf1b1ee14c8571207ab1 397 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 10 390 5.7E-123 T 12-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 AMJ96_CH00437 befeacb8cbceaf1b1ee14c8571207ab1 397 Pfam PF07687 Peptidase dimerisation domain 182 288 5.2E-25 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain AMJ96_CH00437 befeacb8cbceaf1b1ee14c8571207ab1 397 SUPERFAMILY SSF55031 186 287 2.09E-26 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMJ96_CH00437 befeacb8cbceaf1b1ee14c8571207ab1 397 Pfam PF01546 Peptidase family M20/M25/M40 69 389 2.6E-44 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 AMJ96_CH00437 befeacb8cbceaf1b1ee14c8571207ab1 397 SUPERFAMILY SSF53187 4 391 2.04E-61 T 12-10-2018 AMJ96_CH00437 befeacb8cbceaf1b1ee14c8571207ab1 397 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 4 393 48.341 T 12-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 AMJ96_CH00437 befeacb8cbceaf1b1ee14c8571207ab1 397 Gene3D G3DSA:3.30.70.360 186 311 9.9E-113 T 12-10-2018 AMJ96_CH00437 befeacb8cbceaf1b1ee14c8571207ab1 397 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 68 77 - T 12-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AMJ96_CH00437 befeacb8cbceaf1b1ee14c8571207ab1 397 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 104 142 - T 12-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AMJ96_CH00437 befeacb8cbceaf1b1ee14c8571207ab1 397 Gene3D G3DSA:3.40.630.10 10 380 9.9E-113 T 12-10-2018 AMJ96_CH02083 2140cee3dbd1cd657333920e1ae63d53 85 Pfam PF06169 Protein of unknown function (DUF982) 8 79 4.4E-24 T 12-10-2018 IPR010385 Protein of unknown function DUF982 AMJ96_CH03470 ca0edbf13622f76273279923329b810d 185 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 34 65 - T 12-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_CH03470 ca0edbf13622f76273279923329b810d 185 Gene3D G3DSA:1.10.1740.10 2 82 5.9E-20 T 12-10-2018 AMJ96_CH03470 ca0edbf13622f76273279923329b810d 185 SUPERFAMILY SSF88659 102 161 2.4E-16 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_CH03470 ca0edbf13622f76273279923329b810d 185 SUPERFAMILY SSF88946 8 95 2.35E-19 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03470 ca0edbf13622f76273279923329b810d 185 Pfam PF08281 Sigma-70, region 4 105 157 5.1E-17 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_CH03470 ca0edbf13622f76273279923329b810d 185 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 161 1.5E-23 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03470 ca0edbf13622f76273279923329b810d 185 Gene3D G3DSA:1.10.10.10 100 164 7.1E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03470 ca0edbf13622f76273279923329b810d 185 Pfam PF04542 Sigma-70 region 2 17 79 1.2E-12 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_PA00038 14d91a7443e9a4682d120eaef7351ccf 405 Gene3D G3DSA:3.40.50.720 4 317 8.7E-34 T 12-10-2018 AMJ96_PA00038 14d91a7443e9a4682d120eaef7351ccf 405 Pfam PF04321 RmlD substrate binding domain 4 195 2.6E-14 T 12-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 AMJ96_PA00038 14d91a7443e9a4682d120eaef7351ccf 405 SUPERFAMILY SSF51735 4 265 1.48E-34 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02843 db7ae93dfbbf6509caefe0fa063daf84 365 Gene3D G3DSA:3.30.70.1230 167 365 3.0E-42 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02843 db7ae93dfbbf6509caefe0fa063daf84 365 SMART SM00044 142 352 1.4E-6 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH02843 db7ae93dfbbf6509caefe0fa063daf84 365 SUPERFAMILY SSF55073 171 363 2.98E-44 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02843 db7ae93dfbbf6509caefe0fa063daf84 365 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 178 355 1.4E-16 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_PD00238 dd2d4319a8d7399ccd2fe8d2ff959d59 433 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 218 416 3.3E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00238 dd2d4319a8d7399ccd2fe8d2ff959d59 433 SUPERFAMILY SSF161098 183 415 6.8E-39 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00238 dd2d4319a8d7399ccd2fe8d2ff959d59 433 Gene3D G3DSA:1.10.3720.10 180 422 6.0E-44 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00425 cede3c599c696e111ef39fc428588d43 191 Gene3D G3DSA:3.30.505.50 141 186 1.3E-9 T 12-10-2018 IPR038416 Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily AMJ96_CH00425 cede3c599c696e111ef39fc428588d43 191 SUPERFAMILY SSF69754 1 102 9.55E-26 T 12-10-2018 IPR036567 Ribosome hibernation promotion factor-like AMJ96_CH00425 cede3c599c696e111ef39fc428588d43 191 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 100 8.9E-18 T 12-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 AMJ96_CH00425 cede3c599c696e111ef39fc428588d43 191 Pfam PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus 129 182 7.5E-14 T 12-10-2018 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal AMJ96_CH00425 cede3c599c696e111ef39fc428588d43 191 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 95 2.0E-16 T 12-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 AMJ96_CH00425 cede3c599c696e111ef39fc428588d43 191 Hamap MF_00839 Ribosome hibernation promoting factor [hpf]. 1 187 20.461 T 12-10-2018 IPR034694 Ribosome hibernation promoting factor, long/plastid AMJ96_CH00425 cede3c599c696e111ef39fc428588d43 191 Gene3D G3DSA:3.30.160.100 1 108 7.0E-18 T 12-10-2018 IPR036567 Ribosome hibernation promotion factor-like AMJ96_PD00237 6c69ec4fa854afeebb8530fb17b7ccdd 280 SUPERFAMILY SSF161098 15 272 2.15E-53 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00237 6c69ec4fa854afeebb8530fb17b7ccdd 280 Gene3D G3DSA:1.10.3720.10 7 268 1.3E-49 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00237 6c69ec4fa854afeebb8530fb17b7ccdd 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 269 1.3E-10 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03516 72726bfa64274c8c3de8417e26fd91c9 223 Pfam PF01730 UreF 42 180 1.7E-23 T 12-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 AMJ96_CH03516 72726bfa64274c8c3de8417e26fd91c9 223 Hamap MF_01385 Urease accessory protein UreF [ureF]. 9 223 27.646 T 12-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 AMJ96_CH03516 72726bfa64274c8c3de8417e26fd91c9 223 Gene3D G3DSA:1.10.4190.10 4 202 4.1E-37 T 12-10-2018 IPR038277 UreF domain superfamily AMJ96_CH03516 72726bfa64274c8c3de8417e26fd91c9 223 PIRSF PIRSF009467 6 223 9.2E-57 T 12-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 AMJ96_CH00370 e9d72b7e0a0fe02d506ede94d5448539 257 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 256 1.6E-84 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMJ96_CH00370 e9d72b7e0a0fe02d506ede94d5448539 257 Gene3D G3DSA:3.90.226.10 2 199 4.9E-77 T 12-10-2018 AMJ96_CH00370 e9d72b7e0a0fe02d506ede94d5448539 257 SUPERFAMILY SSF52096 1 257 1.61E-92 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_CH00370 e9d72b7e0a0fe02d506ede94d5448539 257 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 AMJ96_CH00370 e9d72b7e0a0fe02d506ede94d5448539 257 Gene3D G3DSA:1.10.12.10 200 256 5.2E-30 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMJ96_PB00180 d686839c1e136b057a1c04a3d3be535a 321 Pfam PF14525 AraC-binding-like domain 22 195 3.0E-22 T 12-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like AMJ96_PB00180 d686839c1e136b057a1c04a3d3be535a 321 Pfam PF12833 Helix-turn-helix domain 239 319 1.7E-25 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PB00180 d686839c1e136b057a1c04a3d3be535a 321 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 270 314 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_PB00180 d686839c1e136b057a1c04a3d3be535a 321 Gene3D G3DSA:1.10.10.60 217 321 3.7E-36 T 12-10-2018 AMJ96_PB00180 d686839c1e136b057a1c04a3d3be535a 321 SMART SM00342 233 318 1.8E-28 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PB00180 d686839c1e136b057a1c04a3d3be535a 321 SUPERFAMILY SSF46689 269 317 4.3E-5 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PB00180 d686839c1e136b057a1c04a3d3be535a 321 SUPERFAMILY SSF46689 217 267 3.05E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02538 f4ecb56e4115638158d8c41e5db4ed9b 119 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 114 7.3E-8 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH02538 f4ecb56e4115638158d8c41e5db4ed9b 119 SUPERFAMILY SSF54593 9 117 4.56E-24 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH02538 f4ecb56e4115638158d8c41e5db4ed9b 119 Gene3D G3DSA:3.10.180.10 1 119 5.8E-20 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_PC00415 12b0bf7cf87fe7334fbb7b08f299772b 278 Hamap MF_00687 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [kduI]. 3 278 55.197 T 12-10-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 AMJ96_PC00415 12b0bf7cf87fe7334fbb7b08f299772b 278 Pfam PF04962 KduI/IolB family 56 273 8.3E-33 T 12-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 AMJ96_PC00415 12b0bf7cf87fe7334fbb7b08f299772b 278 Gene3D G3DSA:2.60.120.10 12 264 6.5E-118 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PC00415 12b0bf7cf87fe7334fbb7b08f299772b 278 Gene3D G3DSA:2.60.120.520 32 144 6.5E-118 T 12-10-2018 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 AMJ96_PC00415 12b0bf7cf87fe7334fbb7b08f299772b 278 SUPERFAMILY SSF51182 4 262 2.1E-106 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_PC00415 12b0bf7cf87fe7334fbb7b08f299772b 278 PIRSF PIRSF006625 3 278 1.8E-130 T 12-10-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 AMJ96_PD00515 51647c26e1fb001b015f2b5cd445c733 242 SMART SM00345 18 76 1.9E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00515 51647c26e1fb001b015f2b5cd445c733 242 Gene3D G3DSA:1.10.10.10 15 77 6.2E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00515 51647c26e1fb001b015f2b5cd445c733 242 Pfam PF07729 FCD domain 96 205 3.3E-15 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00515 51647c26e1fb001b015f2b5cd445c733 242 SUPERFAMILY SSF48008 99 204 6.54E-17 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00515 51647c26e1fb001b015f2b5cd445c733 242 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 76 2.0E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00515 51647c26e1fb001b015f2b5cd445c733 242 SUPERFAMILY SSF46785 15 80 5.75E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00515 51647c26e1fb001b015f2b5cd445c733 242 Gene3D G3DSA:1.20.120.530 88 207 5.0E-17 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PC00209 39f22287c4fda2777a2251678695bf1b 235 Gene3D G3DSA:3.40.1080.10 1 227 6.7E-82 T 12-10-2018 AMJ96_PC00209 39f22287c4fda2777a2251678695bf1b 235 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 17 32 - T 12-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 AMJ96_PC00209 39f22287c4fda2777a2251678695bf1b 235 SUPERFAMILY SSF100950 2 225 8.37E-82 T 12-10-2018 IPR037171 NagB/RpiA transferase-like AMJ96_PC00209 39f22287c4fda2777a2251678695bf1b 235 SMART SM00882 5 218 4.5E-77 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMJ96_PC00209 39f22287c4fda2777a2251678695bf1b 235 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 218 1.5E-112 T 12-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 AMJ96_PC00209 39f22287c4fda2777a2251678695bf1b 235 Pfam PF01144 Coenzyme A transferase 7 217 2.3E-68 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMJ96_CH03168 79df7f0b3c6c11bb7e2988911d6e0a28 85 SUPERFAMILY SSF56752 19 78 3.01E-11 T 12-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 AMJ96_CH03168 79df7f0b3c6c11bb7e2988911d6e0a28 85 Gene3D G3DSA:3.20.10.10 9 80 9.9E-10 T 12-10-2018 AMJ96_CH00884 30150ac0f5d059509550297b7ffce240 112 PIRSF PIRSF032126 1 112 4.5E-41 T 12-10-2018 IPR016989 ATP synthase protein I, alphaproteobacterial AMJ96_CH00884 30150ac0f5d059509550297b7ffce240 112 Pfam PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter 44 96 2.1E-18 T 12-10-2018 IPR032820 Putative F0F1-ATPase subunit, Ca2+/Mg2+ transporter AMJ96_CH04246 7dc0397b1a646286c3541aefc87bda1e 2839 Pfam PF10091 Putative glucoamylase 1298 1505 4.9E-13 T 12-10-2018 IPR019282 Domain of unknown function DUF2329 AMJ96_CH04246 7dc0397b1a646286c3541aefc87bda1e 2839 SUPERFAMILY SSF74650 2056 2321 9.1E-82 T 12-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 AMJ96_CH04246 7dc0397b1a646286c3541aefc87bda1e 2839 Pfam PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain 2350 2777 5.8E-109 T 12-10-2018 IPR033432 Glycosyl hydrolase 36, catalytic domain AMJ96_CH04246 7dc0397b1a646286c3541aefc87bda1e 2839 Gene3D G3DSA:2.70.98.40 1549 1839 8.8E-66 T 12-10-2018 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily AMJ96_CH04246 7dc0397b1a646286c3541aefc87bda1e 2839 Gene3D G3DSA:2.70.98.40 2058 2354 4.7E-81 T 12-10-2018 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily AMJ96_CH04246 7dc0397b1a646286c3541aefc87bda1e 2839 Gene3D G3DSA:1.50.10.140 979 1125 2.4E-13 T 12-10-2018 AMJ96_CH04246 7dc0397b1a646286c3541aefc87bda1e 2839 Pfam PF06165 Glycosyltransferase family 36 1562 1805 5.1E-62 T 12-10-2018 IPR010383 Glycosyl hydrolase 94 AMJ96_CH04246 7dc0397b1a646286c3541aefc87bda1e 2839 Pfam PF06165 Glycosyltransferase family 36 2079 2320 1.7E-66 T 12-10-2018 IPR010383 Glycosyl hydrolase 94 AMJ96_CH04246 7dc0397b1a646286c3541aefc87bda1e 2839 Gene3D G3DSA:2.60.420.10 2359 2830 4.1E-179 T 12-10-2018 AMJ96_CH04246 7dc0397b1a646286c3541aefc87bda1e 2839 SUPERFAMILY SSF74650 1548 1808 8.47E-75 T 12-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 AMJ96_CH04246 7dc0397b1a646286c3541aefc87bda1e 2839 SUPERFAMILY SSF48208 2328 2819 1.19E-94 T 12-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 AMJ96_CH04246 7dc0397b1a646286c3541aefc87bda1e 2839 Gene3D G3DSA:1.50.10.140 1245 1519 1.7E-9 T 12-10-2018 AMJ96_CH04246 7dc0397b1a646286c3541aefc87bda1e 2839 Gene3D G3DSA:1.50.10.10 2364 2777 4.1E-179 T 12-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 AMJ96_CH04246 7dc0397b1a646286c3541aefc87bda1e 2839 SMART SM01068 1534 1595 1.8E-18 T 12-10-2018 IPR009342 Putative carbohydrate binding domain AMJ96_CH04246 7dc0397b1a646286c3541aefc87bda1e 2839 SMART SM01068 2056 2121 3.2E-33 T 12-10-2018 IPR009342 Putative carbohydrate binding domain AMJ96_CH00590 b487d366d4b9fd72e39ff674d117762b 312 SMART SM00849 79 287 1.9E-20 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH00590 b487d366d4b9fd72e39ff674d117762b 312 Gene3D G3DSA:3.60.15.10 24 311 1.5E-74 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH00590 b487d366d4b9fd72e39ff674d117762b 312 Pfam PF00753 Metallo-beta-lactamase superfamily 81 287 8.0E-23 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH00590 b487d366d4b9fd72e39ff674d117762b 312 SUPERFAMILY SSF56281 22 310 2.36E-48 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH02116 a5859e83a9296e58e002e0039f713ffe 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 7.1E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02116 a5859e83a9296e58e002e0039f713ffe 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 7.1E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02116 a5859e83a9296e58e002e0039f713ffe 236 SMART SM00895 98 224 5.0E-23 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH02116 a5859e83a9296e58e002e0039f713ffe 236 SUPERFAMILY SSF48008 95 229 1.62E-28 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH02116 a5859e83a9296e58e002e0039f713ffe 236 Gene3D G3DSA:1.20.120.530 93 234 6.1E-29 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH02116 a5859e83a9296e58e002e0039f713ffe 236 SMART SM00345 15 74 8.9E-20 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02116 a5859e83a9296e58e002e0039f713ffe 236 SUPERFAMILY SSF46785 8 78 4.08E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02116 a5859e83a9296e58e002e0039f713ffe 236 Gene3D G3DSA:1.10.10.10 6 82 1.1E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02116 a5859e83a9296e58e002e0039f713ffe 236 Pfam PF07729 FCD domain 98 223 8.1E-25 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH02116 a5859e83a9296e58e002e0039f713ffe 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 74 1.8E-19 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 Gene3D G3DSA:3.30.450.20 138 256 3.0E-33 T 12-10-2018 AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 Gene3D G3DSA:3.40.50.2300 520 641 1.6E-26 T 12-10-2018 AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 SUPERFAMILY SSF52172 522 639 3.56E-26 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 SUPERFAMILY SSF55785 28 134 1.02E-15 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 377 497 2.0E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 Pfam PF00072 Response regulator receiver domain 524 634 4.3E-16 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 SMART SM00387 376 499 3.5E-23 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 SUPERFAMILY SSF55785 150 264 4.68E-26 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 Gene3D G3DSA:1.10.287.130 262 333 1.1E-16 T 12-10-2018 AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 456 1.6E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 PRINTS PR00344 Bacterial sensor protein C-terminal signature 459 477 1.6E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 442 1.6E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 PRINTS PR00344 Bacterial sensor protein C-terminal signature 483 496 1.6E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 SUPERFAMILY SSF47384 263 332 8.44E-9 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 Gene3D G3DSA:3.30.565.10 337 502 7.4E-39 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 SMART SM00388 270 335 1.2E-8 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 Pfam PF00989 PAS fold 140 251 6.0E-16 T 12-10-2018 IPR013767 PAS fold GO:0006355 AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 Gene3D G3DSA:3.30.450.20 10 137 4.7E-16 T 12-10-2018 AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 SUPERFAMILY SSF55874 325 497 1.15E-35 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 Pfam PF08448 PAS fold 34 128 5.3E-5 T 12-10-2018 IPR013656 PAS fold-4 AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 28 133 1.5E-8 T 12-10-2018 IPR000014 PAS domain AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 136 262 1.8E-33 T 12-10-2018 IPR000014 PAS domain AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 SMART SM00448 522 634 2.2E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 Pfam PF00512 His Kinase A (phospho-acceptor) domain 272 333 6.2E-8 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 SMART SM00091 139 205 2.0E-11 T 12-10-2018 IPR000014 PAS domain AMJ96_PA00134 045238cc7e9d23b1241d1b9dd835bfd1 641 SMART SM00091 14 80 5.0E-5 T 12-10-2018 IPR000014 PAS domain AMJ96_CH01297 946ab58fc4fc1f136f229a9cbba4e455 513 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 357 464 1.5E-25 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH01297 946ab58fc4fc1f136f229a9cbba4e455 513 SMART SM00388 241 310 2.7E-21 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH01297 946ab58fc4fc1f136f229a9cbba4e455 513 SUPERFAMILY SSF47384 228 311 2.94E-20 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH01297 946ab58fc4fc1f136f229a9cbba4e455 513 Gene3D G3DSA:1.10.287.130 212 308 4.4E-24 T 12-10-2018 AMJ96_CH01297 946ab58fc4fc1f136f229a9cbba4e455 513 SMART SM00387 356 468 5.6E-29 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH01297 946ab58fc4fc1f136f229a9cbba4e455 513 SUPERFAMILY SSF55874 299 464 1.03E-41 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH01297 946ab58fc4fc1f136f229a9cbba4e455 513 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 407 8.1E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH01297 946ab58fc4fc1f136f229a9cbba4e455 513 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 465 8.1E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH01297 946ab58fc4fc1f136f229a9cbba4e455 513 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 446 8.1E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH01297 946ab58fc4fc1f136f229a9cbba4e455 513 Gene3D G3DSA:3.30.565.10 309 468 2.5E-40 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH01297 946ab58fc4fc1f136f229a9cbba4e455 513 Pfam PF00512 His Kinase A (phospho-acceptor) domain 241 310 5.3E-19 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PB00412 e84e77db6e4af1c5b25448e69293582d 104 SUPERFAMILY SSF53098 47 101 1.01E-6 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_PA00120 9046d735d82e2e590d3a4b0b2d85f882 664 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 643 2.2E-190 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_PA00120 9046d735d82e2e590d3a4b0b2d85f882 664 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 315 640 1.2E-115 T 12-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal AMJ96_PA00120 9046d735d82e2e590d3a4b0b2d85f882 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 633 646 1.4E-70 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_PA00120 9046d735d82e2e590d3a4b0b2d85f882 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 313 328 1.4E-70 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_PA00120 9046d735d82e2e590d3a4b0b2d85f882 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 1.4E-70 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_PA00120 9046d735d82e2e590d3a4b0b2d85f882 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 394 413 1.4E-70 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_PA00120 9046d735d82e2e590d3a4b0b2d85f882 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 189 204 1.4E-70 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_PA00120 9046d735d82e2e590d3a4b0b2d85f882 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 351 368 1.4E-70 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_PA00120 9046d735d82e2e590d3a4b0b2d85f882 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 1.4E-70 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_PA00120 9046d735d82e2e590d3a4b0b2d85f882 664 Pfam PF01578 Cytochrome C assembly protein 89 295 3.7E-51 T 12-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AMJ96_PA00120 9046d735d82e2e590d3a4b0b2d85f882 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 1.1E-98 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_PA00120 9046d735d82e2e590d3a4b0b2d85f882 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 210 236 1.1E-98 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_PA00120 9046d735d82e2e590d3a4b0b2d85f882 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 310 329 1.1E-98 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_PA00120 9046d735d82e2e590d3a4b0b2d85f882 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 159 181 1.1E-98 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_PA00120 9046d735d82e2e590d3a4b0b2d85f882 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 1.1E-98 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_PA00120 9046d735d82e2e590d3a4b0b2d85f882 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 244 264 1.1E-98 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_PA00120 9046d735d82e2e590d3a4b0b2d85f882 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 274 294 1.1E-98 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_PA00120 9046d735d82e2e590d3a4b0b2d85f882 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 294 310 1.1E-98 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH00508 113106b41103e743e25e8aa672771fb1 339 Pfam PF00107 Zinc-binding dehydrogenase 170 297 2.3E-18 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_CH00508 113106b41103e743e25e8aa672771fb1 339 Gene3D G3DSA:3.40.50.720 147 282 9.4E-81 T 12-10-2018 AMJ96_CH00508 113106b41103e743e25e8aa672771fb1 339 Gene3D G3DSA:3.90.180.10 9 318 9.4E-81 T 12-10-2018 AMJ96_CH00508 113106b41103e743e25e8aa672771fb1 339 SMART SM00829 10 335 0.0011 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_CH00508 113106b41103e743e25e8aa672771fb1 339 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 130 1.6E-29 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_CH00508 113106b41103e743e25e8aa672771fb1 339 SUPERFAMILY SSF50129 1 169 3.3E-43 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_CH00508 113106b41103e743e25e8aa672771fb1 339 SUPERFAMILY SSF51735 137 304 3.69E-30 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH04064 1e62c5ea190ed1365d9e304894f0af11 633 Pfam PF06213 Cobalamin biosynthesis protein CobT 17 287 9.7E-91 T 12-10-2018 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 AMJ96_CH04064 1e62c5ea190ed1365d9e304894f0af11 633 SMART SM00327 412 621 1.9E-10 T 12-10-2018 IPR002035 von Willebrand factor, type A AMJ96_CH04064 1e62c5ea190ed1365d9e304894f0af11 633 TIGRFAM TIGR01651 CobT: cobaltochelatase, CobT subunit 19 619 0.0 T 12-10-2018 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 AMJ96_CH04064 1e62c5ea190ed1365d9e304894f0af11 633 Pfam PF11775 Cobalamin biosynthesis protein CobT VWA domain 401 618 2.0E-112 T 12-10-2018 IPR025861 Cobalamin biosynthesis protein CobT VWA domain KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 AMJ96_CH04064 1e62c5ea190ed1365d9e304894f0af11 633 SUPERFAMILY SSF53300 415 609 6.83E-16 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMJ96_CH04064 1e62c5ea190ed1365d9e304894f0af11 633 PIRSF PIRSF031715 5 626 1.3E-288 T 12-10-2018 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 AMJ96_CH04064 1e62c5ea190ed1365d9e304894f0af11 633 Gene3D G3DSA:3.40.50.410 412 615 8.2E-8 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMJ96_PD00401 501bf5669aa2493b3556fd16268d7017 439 SMART SM00812 12 379 9.5E-104 T 12-10-2018 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 AMJ96_PD00401 501bf5669aa2493b3556fd16268d7017 439 SUPERFAMILY SSF51445 16 340 3.72E-99 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_PD00401 501bf5669aa2493b3556fd16268d7017 439 Gene3D G3DSA:3.20.20.80 20 340 3.6E-117 T 12-10-2018 AMJ96_PD00401 501bf5669aa2493b3556fd16268d7017 439 Gene3D G3DSA:2.60.40.1180 341 402 3.6E-117 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta AMJ96_PD00401 501bf5669aa2493b3556fd16268d7017 439 Pfam PF01120 Alpha-L-fucosidase 12 336 3.3E-86 T 12-10-2018 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 AMJ96_PD00401 501bf5669aa2493b3556fd16268d7017 439 PIRSF PIRSF001092 2 432 3.4E-111 T 12-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 AMJ96_PD00401 501bf5669aa2493b3556fd16268d7017 439 PRINTS PR00741 Glycosyl hydrolase family 29 signature 83 99 8.7E-17 T 12-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 AMJ96_PD00401 501bf5669aa2493b3556fd16268d7017 439 PRINTS PR00741 Glycosyl hydrolase family 29 signature 323 345 8.7E-17 T 12-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 AMJ96_PD00401 501bf5669aa2493b3556fd16268d7017 439 PRINTS PR00741 Glycosyl hydrolase family 29 signature 290 311 8.7E-17 T 12-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 AMJ96_PC00450 ab46b08ea68aee558ecfd44930e37cbc 323 Hamap MF_00568 Quinolinate synthase A [nadA]. 27 323 43.687 T 12-10-2018 IPR023066 Quinolinate synthase A, type 2 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMJ96_PC00450 ab46b08ea68aee558ecfd44930e37cbc 323 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 28 323 4.1E-96 T 12-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMJ96_PC00450 ab46b08ea68aee558ecfd44930e37cbc 323 SUPERFAMILY SSF142754 30 322 6.15E-110 T 12-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMJ96_PC00450 ab46b08ea68aee558ecfd44930e37cbc 323 Gene3D G3DSA:3.40.50.10800 195 279 4.0E-111 T 12-10-2018 AMJ96_PC00450 ab46b08ea68aee558ecfd44930e37cbc 323 Pfam PF02445 Quinolinate synthetase A protein 32 322 9.5E-112 T 12-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMJ96_PC00450 ab46b08ea68aee558ecfd44930e37cbc 323 Gene3D G3DSA:3.40.50.10800 112 321 4.0E-111 T 12-10-2018 AMJ96_PC00450 ab46b08ea68aee558ecfd44930e37cbc 323 Gene3D G3DSA:3.40.50.10800 32 304 4.0E-111 T 12-10-2018 AMJ96_PD00448 b5b4968692deaf7e5aeb8a9633769df6 222 Gene3D G3DSA:3.40.225.10 1 212 2.8E-56 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily AMJ96_PD00448 b5b4968692deaf7e5aeb8a9633769df6 222 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 8 187 3.1E-42 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal AMJ96_PD00448 b5b4968692deaf7e5aeb8a9633769df6 222 SUPERFAMILY SSF53639 3 210 3.34E-59 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily AMJ96_PD00448 b5b4968692deaf7e5aeb8a9633769df6 222 SMART SM01007 8 187 2.0E-58 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal AMJ96_CH03952 e22bb70c546d4a971b212472536e8ec4 253 SMART SM00345 27 86 5.9E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH03952 e22bb70c546d4a971b212472536e8ec4 253 SUPERFAMILY SSF48008 116 242 4.45E-21 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH03952 e22bb70c546d4a971b212472536e8ec4 253 Gene3D G3DSA:1.10.10.10 16 95 6.3E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03952 e22bb70c546d4a971b212472536e8ec4 253 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 60 7.6E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH03952 e22bb70c546d4a971b212472536e8ec4 253 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 60 76 7.6E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH03952 e22bb70c546d4a971b212472536e8ec4 253 SUPERFAMILY SSF46785 22 90 1.05E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03952 e22bb70c546d4a971b212472536e8ec4 253 Pfam PF07729 FCD domain 116 236 1.2E-22 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH03952 e22bb70c546d4a971b212472536e8ec4 253 Pfam PF00392 Bacterial regulatory proteins, gntR family 25 86 1.2E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH03952 e22bb70c546d4a971b212472536e8ec4 253 SMART SM00895 115 237 3.2E-17 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH03952 e22bb70c546d4a971b212472536e8ec4 253 Gene3D G3DSA:1.20.120.530 108 249 9.0E-22 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH00284 0b45bf81001f33f8620f5bd26efcf6bf 328 Gene3D G3DSA:3.40.50.720 1 120 1.9E-36 T 12-10-2018 AMJ96_CH00284 0b45bf81001f33f8620f5bd26efcf6bf 328 Gene3D G3DSA:3.30.360.10 121 328 7.7E-56 T 12-10-2018 AMJ96_CH00284 0b45bf81001f33f8620f5bd26efcf6bf 328 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 121 2.4E-20 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_CH00284 0b45bf81001f33f8620f5bd26efcf6bf 328 SUPERFAMILY SSF51735 2 154 2.82E-47 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00284 0b45bf81001f33f8620f5bd26efcf6bf 328 SUPERFAMILY SSF55347 128 295 1.37E-35 T 12-10-2018 AMJ96_PA00152 a1a96f8b8c1ba35e67ba15118329acdf 404 Pfam PF05940 NnrS protein 22 396 2.6E-106 T 12-10-2018 IPR010266 NnrS AMJ96_CH03112 bcac86ddd965c5fa7e1ea16432657106 375 SUPERFAMILY SSF101447 108 117 1.62E-6 T 12-10-2018 AMJ96_CH03112 bcac86ddd965c5fa7e1ea16432657106 375 Pfam PF06059 Domain of Unknown Function (DUF930) 278 372 1.9E-27 T 12-10-2018 IPR009273 Protein of unknown function DUF930 AMJ96_CH00935 881400a703d2e6f2f80c69f16cb41584 658 Gene3D G3DSA:3.30.870.10 237 379 7.3E-16 T 12-10-2018 AMJ96_CH00935 881400a703d2e6f2f80c69f16cb41584 658 Gene3D G3DSA:3.30.870.10 438 614 9.0E-9 T 12-10-2018 AMJ96_CH00935 881400a703d2e6f2f80c69f16cb41584 658 SUPERFAMILY SSF56024 239 375 1.05E-8 T 12-10-2018 AMJ96_CH00935 881400a703d2e6f2f80c69f16cb41584 658 Pfam PF13091 PLD-like domain 251 371 5.6E-11 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AMJ96_CH00935 881400a703d2e6f2f80c69f16cb41584 658 Pfam PF13091 PLD-like domain 537 599 7.5E-7 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AMJ96_CH00935 881400a703d2e6f2f80c69f16cb41584 658 SUPERFAMILY SSF56024 549 611 2.47E-7 T 12-10-2018 AMJ96_CH00285 5efa051cb0dc9243f06b9c30c3f496d6 124 Pfam PF04138 GtrA-like protein 6 64 1.6E-11 T 12-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 AMJ96_CH00285 5efa051cb0dc9243f06b9c30c3f496d6 124 Pfam PF04138 GtrA-like protein 70 123 8.5E-10 T 12-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 AMJ96_CH01036 29d484757835143eda59bb6ece3c2221 436 Gene3D G3DSA:3.90.220.20 2 201 1.3E-35 T 12-10-2018 AMJ96_CH01036 29d484757835143eda59bb6ece3c2221 436 Gene3D G3DSA:3.90.220.20 203 401 2.3E-23 T 12-10-2018 AMJ96_CH01036 29d484757835143eda59bb6ece3c2221 436 SUPERFAMILY SSF116734 3 205 1.41E-41 T 12-10-2018 AMJ96_CH01036 29d484757835143eda59bb6ece3c2221 436 Pfam PF01420 Type I restriction modification DNA specificity domain 5 169 4.5E-26 T 12-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 AMJ96_CH01036 29d484757835143eda59bb6ece3c2221 436 SUPERFAMILY SSF116734 204 410 2.29E-21 T 12-10-2018 AMJ96_PA00291 d5b80e64cdaf3b479decbb8a3ca82bba 256 SUPERFAMILY SSF51735 4 255 3.14E-78 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PA00291 d5b80e64cdaf3b479decbb8a3ca82bba 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 7.8E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00291 d5b80e64cdaf3b479decbb8a3ca82bba 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 7.8E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00291 d5b80e64cdaf3b479decbb8a3ca82bba 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 7.8E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00291 d5b80e64cdaf3b479decbb8a3ca82bba 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 7.8E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00291 d5b80e64cdaf3b479decbb8a3ca82bba 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 7.8E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00291 d5b80e64cdaf3b479decbb8a3ca82bba 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 7.8E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00291 d5b80e64cdaf3b479decbb8a3ca82bba 256 Gene3D G3DSA:3.40.50.720 1 256 1.2E-80 T 12-10-2018 AMJ96_PA00291 d5b80e64cdaf3b479decbb8a3ca82bba 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 1.1E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00291 d5b80e64cdaf3b479decbb8a3ca82bba 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.1E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00291 d5b80e64cdaf3b479decbb8a3ca82bba 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.1E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00291 d5b80e64cdaf3b479decbb8a3ca82bba 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 252 9.6E-57 T 12-10-2018 AMJ96_CH00646 435e5f565261ba634b38873344dde103 319 SUPERFAMILY SSF161098 94 303 5.07E-14 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00646 435e5f565261ba634b38873344dde103 319 Gene3D G3DSA:1.10.3720.10 88 311 2.0E-17 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00646 435e5f565261ba634b38873344dde103 319 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 317 3.5E-42 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PA00033 504cc888ae106babb8932dd22730927e 266 SUPERFAMILY SSF161098 10 258 1.31E-53 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00033 504cc888ae106babb8932dd22730927e 266 Gene3D G3DSA:1.10.3720.10 10 265 3.2E-47 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00033 504cc888ae106babb8932dd22730927e 266 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 262 1.6E-12 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00549 08f9a794fc35dbd12db6a902da0a6b8c 137 Gene3D G3DSA:1.10.3680.10 2 122 3.1E-12 T 12-10-2018 IPR029024 TerB-like AMJ96_CH00549 08f9a794fc35dbd12db6a902da0a6b8c 137 SUPERFAMILY SSF158682 4 128 2.88E-11 T 12-10-2018 IPR029024 TerB-like AMJ96_PC00135 df5b1fdc68fa944913213c62398a55aa 472 SUPERFAMILY SSF53092 27 193 4.19E-7 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AMJ96_PC00135 df5b1fdc68fa944913213c62398a55aa 472 SUPERFAMILY SSF55920 197 464 3.65E-36 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like AMJ96_PC00135 df5b1fdc68fa944913213c62398a55aa 472 Pfam PF00557 Metallopeptidase family M24 205 453 4.3E-28 T 12-10-2018 IPR000994 Peptidase M24 AMJ96_PD00486 dec92ef83937646c969f10c989dccac3 375 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMJ96_PD00486 dec92ef83937646c969f10c989dccac3 375 SUPERFAMILY SSF50129 324 375 3.3E-13 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_PD00486 dec92ef83937646c969f10c989dccac3 375 Pfam PF00107 Zinc-binding dehydrogenase 197 326 2.2E-17 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_PD00486 dec92ef83937646c969f10c989dccac3 375 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 152 2.9E-24 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_PD00486 dec92ef83937646c969f10c989dccac3 375 SUPERFAMILY SSF51735 160 340 4.09E-39 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00486 dec92ef83937646c969f10c989dccac3 375 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 3 374 1.9E-176 T 12-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 AMJ96_PD00486 dec92ef83937646c969f10c989dccac3 375 Gene3D G3DSA:3.40.50.720 174 318 5.2E-140 T 12-10-2018 AMJ96_PD00486 dec92ef83937646c969f10c989dccac3 375 Gene3D G3DSA:3.90.180.10 6 370 5.2E-140 T 12-10-2018 AMJ96_PD00486 dec92ef83937646c969f10c989dccac3 375 SUPERFAMILY SSF50129 1 186 1.47E-67 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_CH00909 7140a4a2c16547a68a561001b7db902b 607 SMART SM00283 343 590 4.2E-87 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH00909 7140a4a2c16547a68a561001b7db902b 607 SMART SM01049 33 126 5.9E-24 T 12-10-2018 IPR033480 Single Cache domain 2 AMJ96_CH00909 7140a4a2c16547a68a561001b7db902b 607 SUPERFAMILY SSF58104 321 591 1.83E-62 T 12-10-2018 AMJ96_CH00909 7140a4a2c16547a68a561001b7db902b 607 Gene3D G3DSA:3.30.450.20 35 181 3.2E-33 T 12-10-2018 AMJ96_CH00909 7140a4a2c16547a68a561001b7db902b 607 Gene3D G3DSA:1.20.1480.50 182 269 9.3E-9 T 12-10-2018 AMJ96_CH00909 7140a4a2c16547a68a561001b7db902b 607 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 407 556 4.0E-44 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH00909 7140a4a2c16547a68a561001b7db902b 607 Gene3D G3DSA:1.10.287.950 293 592 4.7E-72 T 12-10-2018 AMJ96_CH00909 7140a4a2c16547a68a561001b7db902b 607 SMART SM00304 210 263 0.012 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH00909 7140a4a2c16547a68a561001b7db902b 607 SMART SM00304 291 342 4.6 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH00909 7140a4a2c16547a68a561001b7db902b 607 SUPERFAMILY SSF158472 210 260 3.66E-5 T 12-10-2018 AMJ96_CH00909 7140a4a2c16547a68a561001b7db902b 607 Pfam PF17200 Single Cache domain 2 38 185 8.6E-32 T 12-10-2018 IPR033480 Single Cache domain 2 AMJ96_PD00144 42b91399c64ca62db20f5fd9f873e35a 328 SUPERFAMILY SSF53659 6 322 3.84E-98 T 12-10-2018 AMJ96_PD00144 42b91399c64ca62db20f5fd9f873e35a 328 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 38 317 1.3E-92 T 12-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 AMJ96_PD00144 42b91399c64ca62db20f5fd9f873e35a 328 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 6 320 8.2E-102 T 12-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 AMJ96_PD00144 42b91399c64ca62db20f5fd9f873e35a 328 Gene3D G3DSA:3.40.718.10 1 323 2.7E-115 T 12-10-2018 AMJ96_CH01438 a54ff320c3acd4177a89b75d4bfe0831 256 Pfam PF02565 Recombination protein O C terminal 85 221 1.2E-26 T 12-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AMJ96_CH01438 a54ff320c3acd4177a89b75d4bfe0831 256 SUPERFAMILY SSF50249 1 67 5.14E-7 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH01438 a54ff320c3acd4177a89b75d4bfe0831 256 Gene3D G3DSA:1.20.1440.120 96 221 2.7E-10 T 12-10-2018 AMJ96_CH01438 a54ff320c3acd4177a89b75d4bfe0831 256 ProDom PD202328 DNA REPAIR RECOMBINATION RECO DAMAGE O O RECO-RELATED RECOMBINATIONAL RP549 134 225 3.0E-27 T 12-10-2018 AMJ96_CH01438 a54ff320c3acd4177a89b75d4bfe0831 256 Gene3D G3DSA:2.40.50.140 1 68 5.2E-7 T 12-10-2018 AMJ96_CH01438 a54ff320c3acd4177a89b75d4bfe0831 256 SUPERFAMILY SSF57863 88 177 1.2E-12 T 12-10-2018 IPR037278 ARFGAP/RecO-like zinc finger AMJ96_CH01438 a54ff320c3acd4177a89b75d4bfe0831 256 TIGRFAM TIGR00613 reco: DNA repair protein RecO 3 222 3.3E-40 T 12-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AMJ96_CH01438 a54ff320c3acd4177a89b75d4bfe0831 256 Pfam PF11967 Recombination protein O N terminal 1 70 3.7E-16 T 12-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal AMJ96_CH01438 a54ff320c3acd4177a89b75d4bfe0831 256 Hamap MF_00201 DNA repair protein RecO [recO]. 1 237 16.801 T 12-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AMJ96_CH02899 4a620f4e2c1fcb461fccfa156e2b2a96 145 PIRSF PIRSF029509 1 143 4.7E-38 T 12-10-2018 IPR016923 Uncharacterised conserved protein UCP029509, membrane AMJ96_CH02899 4a620f4e2c1fcb461fccfa156e2b2a96 145 Pfam PF09990 Predicted membrane protein (DUF2231) 46 132 5.3E-8 T 12-10-2018 IPR019251 Domain of unknown function DUF2231, transmembrane AMJ96_CH03723 cfbaa66207c4a0a2255478bf56125c8b 187 Gene3D G3DSA:1.20.120.450 7 164 3.7E-36 T 12-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes AMJ96_CH03723 cfbaa66207c4a0a2255478bf56125c8b 187 Pfam PF05163 DinB family 11 170 1.1E-33 T 12-10-2018 IPR007837 DNA damage-inducible protein DinB AMJ96_CH03723 cfbaa66207c4a0a2255478bf56125c8b 187 SUPERFAMILY SSF109854 9 149 2.49E-32 T 12-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes AMJ96_PD00042 805a3789ecb60d5ad83e8b18246c1045 148 Pfam PF02502 Ribose/Galactose Isomerase 3 138 7.4E-41 T 12-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AMJ96_PD00042 805a3789ecb60d5ad83e8b18246c1045 148 PIRSF PIRSF005384 1 145 2.2E-40 T 12-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AMJ96_PD00042 805a3789ecb60d5ad83e8b18246c1045 148 SUPERFAMILY SSF89623 1 141 2.62E-43 T 12-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AMJ96_PD00042 805a3789ecb60d5ad83e8b18246c1045 148 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 3 139 4.9E-35 T 12-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AMJ96_PD00042 805a3789ecb60d5ad83e8b18246c1045 148 Gene3D G3DSA:3.40.1400.10 1 147 5.0E-43 T 12-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AMJ96_CH01820 5d96d61f973e53fa24c93b3c2fefe124 303 Pfam PF00892 EamA-like transporter family 151 278 6.0E-13 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH01820 5d96d61f973e53fa24c93b3c2fefe124 303 Pfam PF00892 EamA-like transporter family 7 140 3.0E-12 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH01820 5d96d61f973e53fa24c93b3c2fefe124 303 SUPERFAMILY SSF103481 186 282 3.14E-13 T 12-10-2018 AMJ96_CH01820 5d96d61f973e53fa24c93b3c2fefe124 303 SUPERFAMILY SSF103481 57 143 8.89E-10 T 12-10-2018 AMJ96_PB00340 de64f78541f7b2f6ffd3940e13cd821d 257 Gene3D G3DSA:3.30.420.10 110 246 1.3E-17 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_PB00340 de64f78541f7b2f6ffd3940e13cd821d 257 Pfam PF13683 Integrase core domain 199 257 1.6E-23 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMJ96_PB00340 de64f78541f7b2f6ffd3940e13cd821d 257 SUPERFAMILY SSF53098 111 257 5.92E-31 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_PB00340 de64f78541f7b2f6ffd3940e13cd821d 257 Pfam PF13276 HTH-like domain 46 98 6.0E-9 T 12-10-2018 IPR025948 HTH-like domain AMJ96_PD00470 c1e79170b1ec80225005b93542ed1126 158 Pfam PF01037 Lrp/AsnC ligand binding domain 70 142 7.0E-15 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMJ96_PD00470 c1e79170b1ec80225005b93542ed1126 158 SMART SM00344 3 112 2.0E-44 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMJ96_PD00470 c1e79170b1ec80225005b93542ed1126 158 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 50 3.2E-19 T 12-10-2018 AMJ96_PD00470 c1e79170b1ec80225005b93542ed1126 158 SUPERFAMILY SSF54909 65 144 5.23E-17 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_PD00470 c1e79170b1ec80225005b93542ed1126 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 4.2E-16 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_PD00470 c1e79170b1ec80225005b93542ed1126 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 4.2E-16 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_PD00470 c1e79170b1ec80225005b93542ed1126 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 4.2E-16 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_PD00470 c1e79170b1ec80225005b93542ed1126 158 Gene3D G3DSA:1.10.10.10 1 54 2.1E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00470 c1e79170b1ec80225005b93542ed1126 158 SUPERFAMILY SSF46785 2 62 1.32E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00470 c1e79170b1ec80225005b93542ed1126 158 ProSitePatterns PS00519 AsnC-type HTH domain signature. 21 47 - T 12-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AMJ96_PD00470 c1e79170b1ec80225005b93542ed1126 158 Gene3D G3DSA:3.30.70.920 55 145 1.3E-20 T 12-10-2018 AMJ96_PC00076 d5072e9abff6b5e44912699140805142 299 SUPERFAMILY SSF46785 4 112 5.37E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00076 d5072e9abff6b5e44912699140805142 299 Gene3D G3DSA:3.40.190.10 91 292 2.6E-57 T 12-10-2018 AMJ96_PC00076 d5072e9abff6b5e44912699140805142 299 Pfam PF03466 LysR substrate binding domain 90 294 3.6E-43 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PC00076 d5072e9abff6b5e44912699140805142 299 Gene3D G3DSA:1.10.10.10 3 88 2.7E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00076 d5072e9abff6b5e44912699140805142 299 SUPERFAMILY SSF53850 90 297 5.27E-44 T 12-10-2018 AMJ96_PC00076 d5072e9abff6b5e44912699140805142 299 Gene3D G3DSA:3.40.190.10 165 266 2.6E-57 T 12-10-2018 AMJ96_PC00076 d5072e9abff6b5e44912699140805142 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 1.1E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02915 51a2c1f55a2045e8a263f1c5bc41e4c3 321 SUPERFAMILY SSF161098 81 307 5.49E-46 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02915 51a2c1f55a2045e8a263f1c5bc41e4c3 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 120 318 1.7E-10 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02915 51a2c1f55a2045e8a263f1c5bc41e4c3 321 Gene3D G3DSA:1.10.3720.10 77 319 5.5E-52 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01759 840e4492530c65f13530047d51e218f2 207 Gene3D G3DSA:1.20.5.810 8 50 3.9E-5 T 12-10-2018 AMJ96_CH01759 840e4492530c65f13530047d51e218f2 207 Gene3D G3DSA:1.20.1290.10 57 179 1.4E-28 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_CH01759 840e4492530c65f13530047d51e218f2 207 SUPERFAMILY SSF69118 7 174 7.49E-38 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_CH01759 840e4492530c65f13530047d51e218f2 207 Pfam PF02627 Carboxymuconolactone decarboxylase family 40 98 1.2E-4 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMJ96_CH01759 840e4492530c65f13530047d51e218f2 207 Pfam PF02627 Carboxymuconolactone decarboxylase family 106 170 9.1E-5 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMJ96_CH02104 4ada96c75ea65bbc1af2beceb8d54783 434 Gene3D G3DSA:3.40.190.10 154 423 1.9E-93 T 12-10-2018 AMJ96_CH02104 4ada96c75ea65bbc1af2beceb8d54783 434 Gene3D G3DSA:3.40.190.10 52 391 1.9E-93 T 12-10-2018 AMJ96_CH02104 4ada96c75ea65bbc1af2beceb8d54783 434 Pfam PF13416 Bacterial extracellular solute-binding protein 56 369 3.7E-35 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH02104 4ada96c75ea65bbc1af2beceb8d54783 434 SUPERFAMILY SSF53850 33 427 6.92E-62 T 12-10-2018 AMJ96_CH00780 3466b1fcbea0ec37ff0a35fbf87d42a3 179 SUPERFAMILY SSF52540 6 170 1.76E-24 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00780 3466b1fcbea0ec37ff0a35fbf87d42a3 179 Gene3D G3DSA:3.40.50.300 1 176 9.1E-66 T 12-10-2018 AMJ96_CH00780 3466b1fcbea0ec37ff0a35fbf87d42a3 179 Pfam PF01202 Shikimate kinase 18 128 4.5E-10 T 12-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AMJ96_CH00780 3466b1fcbea0ec37ff0a35fbf87d42a3 179 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 12 166 2.8E-60 T 12-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 AMJ96_CH01276 f4b4e48051a0ae209461fa444d0b16c6 222 Pfam PF03006 Haemolysin-III related 20 208 2.9E-24 T 12-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 AMJ96_CH02893 0efde2e76f577aa65fe6dc4c9d7ba0a0 347 Pfam PF10042 Uncharacterized conserved protein (DUF2278) 2 212 3.0E-54 T 12-10-2018 IPR019268 Protein of unknown function DUF2278 AMJ96_CH02893 0efde2e76f577aa65fe6dc4c9d7ba0a0 347 SUPERFAMILY SSF74853 247 339 2.49E-9 T 12-10-2018 IPR036415 Lamin tail domain superfamily AMJ96_CH02893 0efde2e76f577aa65fe6dc4c9d7ba0a0 347 Pfam PF00932 Lamin Tail Domain 247 334 1.5E-11 T 12-10-2018 IPR001322 Lamin tail domain AMJ96_CH01711 a3c50bf45bc853747064d778f2596a82 156 SUPERFAMILY SSF47973 2 149 1.57E-63 T 12-10-2018 IPR036823 Ribosomal protein S7 domain superfamily AMJ96_CH01711 a3c50bf45bc853747064d778f2596a82 156 Gene3D G3DSA:1.10.455.10 2 156 6.0E-63 T 12-10-2018 IPR036823 Ribosomal protein S7 domain superfamily AMJ96_CH01711 a3c50bf45bc853747064d778f2596a82 156 PIRSF PIRSF002122 2 156 3.0E-63 T 12-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 AMJ96_CH01711 a3c50bf45bc853747064d778f2596a82 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 3.2E-69 T 12-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 AMJ96_CH01711 a3c50bf45bc853747064d778f2596a82 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 12-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01711 a3c50bf45bc853747064d778f2596a82 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 1.7E-68 T 12-10-2018 IPR023798 Ribosomal protein S7 domain AMJ96_CH01711 a3c50bf45bc853747064d778f2596a82 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 36.469 T 12-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 AMJ96_CH00779 45db63a534d2fe6dca71462ba137827e 317 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 230 314 1.0E-25 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_CH00779 45db63a534d2fe6dca71462ba137827e 317 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 230 295 3.4E-18 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_CH00779 45db63a534d2fe6dca71462ba137827e 317 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00779 45db63a534d2fe6dca71462ba137827e 317 Gene3D G3DSA:3.40.50.300 4 317 1.9E-93 T 12-10-2018 AMJ96_CH00779 45db63a534d2fe6dca71462ba137827e 317 SUPERFAMILY SSF52540 9 249 1.02E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00779 45db63a534d2fe6dca71462ba137827e 317 SMART SM00382 40 228 1.0E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00779 45db63a534d2fe6dca71462ba137827e 317 Pfam PF00005 ABC transporter 31 178 1.1E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00119 d8cf34e6340f226f828e92dad9739ecf 453 Gene3D G3DSA:3.30.390.10 12 124 3.0E-21 T 12-10-2018 IPR029017 Enolase-like, N-terminal AMJ96_PC00119 d8cf34e6340f226f828e92dad9739ecf 453 SUPERFAMILY SSF51604 113 417 6.55E-64 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_PC00119 d8cf34e6340f226f828e92dad9739ecf 453 Pfam PF13378 Enolase C-terminal domain-like 235 417 2.4E-44 T 12-10-2018 IPR029065 Enolase C-terminal domain-like AMJ96_PC00119 d8cf34e6340f226f828e92dad9739ecf 453 SUPERFAMILY SSF54826 24 130 2.26E-21 T 12-10-2018 AMJ96_PC00119 d8cf34e6340f226f828e92dad9739ecf 453 Gene3D G3DSA:3.20.20.120 125 410 9.7E-76 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_PC00119 d8cf34e6340f226f828e92dad9739ecf 453 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 39 125 4.3E-11 T 12-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMJ96_PC00119 d8cf34e6340f226f828e92dad9739ecf 453 SMART SM00922 145 300 4.1E-7 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMJ96_CH00038 c93b04824d95e2cb64193bcd95ccde9f 145 Pfam PF00472 RF-1 domain 12 138 3.2E-23 T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMJ96_CH00038 c93b04824d95e2cb64193bcd95ccde9f 145 Gene3D G3DSA:3.30.160.20 5 142 2.1E-36 T 12-10-2018 AMJ96_CH00038 c93b04824d95e2cb64193bcd95ccde9f 145 SUPERFAMILY SSF110916 20 107 1.96E-9 T 12-10-2018 AMJ96_CH03864 b4e7f95a0ec5c6f100e695703625b7d9 767 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 332 489 3.0E-24 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH03864 b4e7f95a0ec5c6f100e695703625b7d9 767 Pfam PF00990 Diguanylate cyclase, GGDEF domain 335 485 7.3E-31 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH03864 b4e7f95a0ec5c6f100e695703625b7d9 767 Pfam PF12860 PAS fold 214 327 1.6E-14 T 12-10-2018 AMJ96_CH03864 b4e7f95a0ec5c6f100e695703625b7d9 767 Gene3D G3DSA:3.30.70.270 328 506 7.9E-36 T 12-10-2018 AMJ96_CH03864 b4e7f95a0ec5c6f100e695703625b7d9 767 Pfam PF00563 EAL domain 509 741 7.4E-68 T 12-10-2018 IPR001633 EAL domain AMJ96_CH03864 b4e7f95a0ec5c6f100e695703625b7d9 767 SUPERFAMILY SSF141868 510 750 1.26E-79 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH03864 b4e7f95a0ec5c6f100e695703625b7d9 767 SMART SM00091 208 275 5.1E-5 T 12-10-2018 IPR000014 PAS domain AMJ96_CH03864 b4e7f95a0ec5c6f100e695703625b7d9 767 Gene3D G3DSA:3.30.450.20 199 327 2.0E-9 T 12-10-2018 AMJ96_CH03864 b4e7f95a0ec5c6f100e695703625b7d9 767 Gene3D G3DSA:3.20.20.450 507 752 2.1E-86 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH03864 b4e7f95a0ec5c6f100e695703625b7d9 767 SMART SM00052 503 746 1.3E-92 T 12-10-2018 IPR001633 EAL domain AMJ96_CH03864 b4e7f95a0ec5c6f100e695703625b7d9 767 SUPERFAMILY SSF55785 208 258 1.81E-6 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH03864 b4e7f95a0ec5c6f100e695703625b7d9 767 SUPERFAMILY SSF55073 338 491 5.73E-32 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03864 b4e7f95a0ec5c6f100e695703625b7d9 767 SMART SM00267 322 493 1.3E-32 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH00201 0002a8adc51098272e041cad90aa0571 177 SUPERFAMILY SSF50630 60 163 1.46E-19 T 12-10-2018 IPR021109 Aspartic peptidase domain superfamily AMJ96_CH00201 0002a8adc51098272e041cad90aa0571 177 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 81 92 - T 12-10-2018 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 AMJ96_CH00201 0002a8adc51098272e041cad90aa0571 177 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 58 177 4.9E-42 T 12-10-2018 IPR011969 Clan AA aspartic peptidase, C-terminal AMJ96_CH00201 0002a8adc51098272e041cad90aa0571 177 Gene3D G3DSA:2.40.70.10 52 177 3.7E-31 T 12-10-2018 IPR021109 Aspartic peptidase domain superfamily AMJ96_CH00201 0002a8adc51098272e041cad90aa0571 177 Pfam PF13975 gag-polyprotein putative aspartyl protease 72 161 5.6E-24 T 12-10-2018 AMJ96_CH02726 c7ec36a818f7759841f8d4b9927822fe 333 Gene3D G3DSA:3.20.20.70 4 246 9.4E-76 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH02726 c7ec36a818f7759841f8d4b9927822fe 333 SUPERFAMILY SSF51395 8 301 4.87E-76 T 12-10-2018 AMJ96_CH02726 c7ec36a818f7759841f8d4b9927822fe 333 Gene3D G3DSA:1.20.120.1460 250 322 9.1E-15 T 12-10-2018 AMJ96_CH02726 c7ec36a818f7759841f8d4b9927822fe 333 PIRSF PIRSF006621 1 323 2.4E-72 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMJ96_CH02726 c7ec36a818f7759841f8d4b9927822fe 333 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 89 107 - T 12-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMJ96_CH02726 c7ec36a818f7759841f8d4b9927822fe 333 Pfam PF01207 Dihydrouridine synthase (Dus) 10 309 2.9E-76 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMJ96_CH02726 c7ec36a818f7759841f8d4b9927822fe 333 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 1 323 48.454 T 12-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 AMJ96_CH02726 c7ec36a818f7759841f8d4b9927822fe 333 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 8 321 2.6E-129 T 12-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 AMJ96_CH04242 f7a9cfc4d2e1e88246ce3d682401c0aa 277 Pfam PF00005 ABC transporter 27 182 1.0E-20 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH04242 f7a9cfc4d2e1e88246ce3d682401c0aa 277 Gene3D G3DSA:3.40.50.300 1 277 2.2E-74 T 12-10-2018 AMJ96_CH04242 f7a9cfc4d2e1e88246ce3d682401c0aa 277 SUPERFAMILY SSF52540 4 243 1.94E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04242 f7a9cfc4d2e1e88246ce3d682401c0aa 277 SMART SM00382 32 231 1.8E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 SUPERFAMILY SSF48113 17 421 7.37E-155 T 12-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 Pfam PF00141 Peroxidase 394 701 6.6E-37 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 Pfam PF00141 Peroxidase 71 387 2.9E-48 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 10 729 0.0 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 ProSitePatterns PS00436 Peroxidases active site signature. 88 99 - T 12-10-2018 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 Gene3D G3DSA:1.10.520.10 424 727 2.9E-144 T 12-10-2018 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 Hamap MF_01961 Catalase-peroxidase [katG]. 6 728 42.021 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 Gene3D G3DSA:1.10.520.10 20 422 2.2E-222 T 12-10-2018 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 PRINTS PR00458 Haem peroxidase superfamily signature 166 178 9.6E-19 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 PRINTS PR00458 Haem peroxidase superfamily signature 251 266 9.6E-19 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 PRINTS PR00458 Haem peroxidase superfamily signature 148 165 9.6E-19 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 PRINTS PR00458 Haem peroxidase superfamily signature 88 102 9.6E-19 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 PRINTS PR00458 Haem peroxidase superfamily signature 310 325 9.6E-19 T 12-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 Gene3D G3DSA:1.10.420.20 188 389 2.2E-222 T 12-10-2018 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 SUPERFAMILY SSF48113 422 727 1.77E-107 T 12-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 ProSitePatterns PS00435 Peroxidases proximal heme-ligand signature. 251 261 - T 12-10-2018 IPR019793 Peroxidases heam-ligand binding site Reactome: R-HSA-2408557 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 Gene3D G3DSA:1.10.420.10 580 703 2.9E-144 T 12-10-2018 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 65 90 5.4E-56 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 472 498 5.4E-56 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 24 46 5.4E-56 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 50 63 5.4E-56 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 AMJ96_PD00005 33e41664a34a262c0bc32badfa7cdb62 729 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 259 282 5.4E-56 T 12-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 AMJ96_PD00272 a581011e188050a816cdfa41e18bfabc 256 Pfam PF00005 ABC transporter 21 179 1.2E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00272 a581011e188050a816cdfa41e18bfabc 256 Gene3D G3DSA:3.40.50.300 1 255 9.9E-69 T 12-10-2018 AMJ96_PD00272 a581011e188050a816cdfa41e18bfabc 256 SUPERFAMILY SSF52540 5 248 1.21E-72 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00272 a581011e188050a816cdfa41e18bfabc 256 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00272 a581011e188050a816cdfa41e18bfabc 256 PIRSF PIRSF039085 2 255 1.9E-109 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMJ96_PD00272 a581011e188050a816cdfa41e18bfabc 256 SMART SM00382 30 227 4.6E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00216 b27b59064aefadace8b3fecf38a6811e 342 Gene3D G3DSA:3.30.66.10 14 96 6.9E-30 T 12-10-2018 IPR035447 DNA topoisomerase I, N-terminal AMJ96_PC00216 b27b59064aefadace8b3fecf38a6811e 342 Gene3D G3DSA:1.10.132.120 98 308 2.4E-66 T 12-10-2018 AMJ96_PC00216 b27b59064aefadace8b3fecf38a6811e 342 SUPERFAMILY SSF55869 30 91 1.2E-19 T 12-10-2018 IPR035447 DNA topoisomerase I, N-terminal AMJ96_PC00216 b27b59064aefadace8b3fecf38a6811e 342 Pfam PF01028 Eukaryotic DNA topoisomerase I, catalytic core 93 253 4.3E-20 T 12-10-2018 IPR013500 DNA topoisomerase I, catalytic core, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 AMJ96_PC00216 b27b59064aefadace8b3fecf38a6811e 342 Gene3D G3DSA:3.90.15.10 121 240 2.4E-66 T 12-10-2018 IPR014711 DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 AMJ96_PC00216 b27b59064aefadace8b3fecf38a6811e 342 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 286 297 1.5E-6 T 12-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 AMJ96_PC00216 b27b59064aefadace8b3fecf38a6811e 342 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 153 167 1.5E-6 T 12-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 AMJ96_PC00216 b27b59064aefadace8b3fecf38a6811e 342 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 130 149 1.5E-6 T 12-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 AMJ96_PC00216 b27b59064aefadace8b3fecf38a6811e 342 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 239 253 1.5E-6 T 12-10-2018 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 AMJ96_PC00216 b27b59064aefadace8b3fecf38a6811e 342 SUPERFAMILY SSF56349 86 305 8.54E-56 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMJ96_CH02827 451e16c76ad1999153da74404fbfc746 150 Pfam PF13767 Domain of unknown function (DUF4168) 59 136 9.6E-17 T 12-10-2018 IPR025433 Domain of unknown function DUF4168 AMJ96_CH01171 1210611afc2c1316347faff856230f71 317 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 45 272 1.1E-59 T 12-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 AMJ96_CH01171 1210611afc2c1316347faff856230f71 317 Gene3D G3DSA:3.40.50.620 22 227 8.9E-62 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH01171 1210611afc2c1316347faff856230f71 317 PIRSF PIRSF002936 15 317 1.7E-143 T 12-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMJ96_CH01171 1210611afc2c1316347faff856230f71 317 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 24 317 3.0E-157 T 12-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMJ96_CH01171 1210611afc2c1316347faff856230f71 317 SUPERFAMILY SSF52402 22 225 1.13E-68 T 12-10-2018 AMJ96_CH01171 1210611afc2c1316347faff856230f71 317 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 19 317 57.12 T 12-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 Pfam PF00067 Cytochrome P450 93 275 8.5E-6 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 Pfam PF00067 Cytochrome P450 288 398 1.7E-21 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 Gene3D G3DSA:3.30.70.20 433 492 1.1E-10 T 12-10-2018 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 Gene3D G3DSA:1.10.630.10 7 432 1.1E-101 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 Pfam PF13459 4Fe-4S single cluster domain 434 491 1.4E-11 T 12-10-2018 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 PRINTS PR00385 P450 superfamily signature 289 300 2.5E-5 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 PRINTS PR00385 P450 superfamily signature 367 376 2.5E-5 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 PRINTS PR00385 P450 superfamily signature 376 387 2.5E-5 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 PRINTS PR00385 P450 superfamily signature 254 271 2.5E-5 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 369 378 - T 12-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 PRINTS PR00359 B-class P450 signature 289 300 7.8E-47 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 PRINTS PR00359 B-class P450 signature 308 335 7.8E-47 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 PRINTS PR00359 B-class P450 signature 97 108 7.8E-47 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 PRINTS PR00359 B-class P450 signature 207 229 7.8E-47 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 PRINTS PR00359 B-class P450 signature 367 376 7.8E-47 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 PRINTS PR00359 B-class P450 signature 147 163 7.8E-47 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 PRINTS PR00359 B-class P450 signature 336 351 7.8E-47 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 PRINTS PR00359 B-class P450 signature 164 179 7.8E-47 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 PRINTS PR00359 B-class P450 signature 376 387 7.8E-47 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 SUPERFAMILY SSF54862 433 491 1.09E-8 T 12-10-2018 AMJ96_PB00336 c404f54b19007d28485465e3fd0795f5 492 SUPERFAMILY SSF48264 20 425 3.27E-79 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH03777 707713062614bc748f183f285ba815c8 358 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 5 354 42.021 T 12-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 AMJ96_CH03777 707713062614bc748f183f285ba815c8 358 SUPERFAMILY SSF52440 5 97 3.17E-28 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMJ96_CH03777 707713062614bc748f183f285ba815c8 358 SUPERFAMILY SSF51246 304 354 1.18E-14 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMJ96_CH03777 707713062614bc748f183f285ba815c8 358 Gene3D G3DSA:3.30.1490.20 106 176 7.1E-23 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMJ96_CH03777 707713062614bc748f183f285ba815c8 358 Gene3D G3DSA:3.30.470.20 177 357 2.7E-73 T 12-10-2018 AMJ96_CH03777 707713062614bc748f183f285ba815c8 358 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 5 353 1.3E-118 T 12-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 AMJ96_CH03777 707713062614bc748f183f285ba815c8 358 Gene3D G3DSA:3.40.50.20 2 105 2.2E-40 T 12-10-2018 AMJ96_CH03777 707713062614bc748f183f285ba815c8 358 SUPERFAMILY SSF56059 101 299 5.48E-61 T 12-10-2018 AMJ96_CH03777 707713062614bc748f183f285ba815c8 358 Pfam PF02222 ATP-grasp domain 112 280 7.5E-54 T 12-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 Pfam PF07517 SecA DEAD-like domain 9 390 9.9E-132 T 12-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 Gene3D G3DSA:3.10.450.50 854 902 8.2E-8 T 12-10-2018 AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 SUPERFAMILY SSF52540 8 404 5.59E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 ProSitePatterns PS01312 SecA family signature. 490 505 - T 12-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 Pfam PF01043 SecA preprotein cross-linking domain 234 347 3.7E-37 T 12-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 Pfam PF07516 SecA Wing and Scaffold domain 613 824 1.3E-64 T 12-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 SUPERFAMILY SSF81886 616 890 5.36E-79 T 12-10-2018 IPR036266 SecA, Wing/Scaffold superfamily AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 Hamap MF_01382 Protein translocase subunit SecA [secA]. 7 827 20.008 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 SUPERFAMILY SSF52540 406 614 9.69E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 Gene3D G3DSA:3.40.50.300 406 615 1.6E-84 T 12-10-2018 AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 PRINTS PR00906 SecA protein signature 328 350 1.7E-69 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 PRINTS PR00906 SecA protein signature 103 117 1.7E-69 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 PRINTS PR00906 SecA protein signature 402 415 1.7E-69 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 PRINTS PR00906 SecA protein signature 65 89 1.7E-69 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 PRINTS PR00906 SecA protein signature 172 192 1.7E-69 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 PRINTS PR00906 SecA protein signature 365 382 1.7E-69 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 PRINTS PR00906 SecA protein signature 119 129 1.7E-69 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 Pfam PF02810 SEC-C motif 882 899 3.5E-10 T 12-10-2018 IPR004027 SEC-C motif AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 Gene3D G3DSA:1.10.3060.10 617 827 1.2E-71 T 12-10-2018 AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 Gene3D G3DSA:3.40.50.300 24 404 3.0E-178 T 12-10-2018 AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 SMART SM00958 230 347 7.7E-74 T 12-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 SMART SM00957 8 391 7.2E-299 T 12-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 Gene3D G3DSA:3.90.1440.10 231 357 3.0E-178 T 12-10-2018 AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 SUPERFAMILY SSF81767 229 357 1.44E-42 T 12-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 AMJ96_CH04012 2826d138f159c68ce63c282131d7c475 904 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 30 812 0.0 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AMJ96_PA00058 c9ee42ee61bbdb4cf6b286ee25e91996 335 Gene3D G3DSA:3.40.50.2300 169 296 1.4E-80 T 12-10-2018 AMJ96_PA00058 c9ee42ee61bbdb4cf6b286ee25e91996 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 12 57 7.5E-19 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00058 c9ee42ee61bbdb4cf6b286ee25e91996 335 SMART SM00354 10 80 1.7E-35 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00058 c9ee42ee61bbdb4cf6b286ee25e91996 335 SUPERFAMILY SSF53822 69 335 6.6E-72 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PA00058 c9ee42ee61bbdb4cf6b286ee25e91996 335 Gene3D G3DSA:1.10.260.40 2 63 1.6E-25 T 12-10-2018 AMJ96_PA00058 c9ee42ee61bbdb4cf6b286ee25e91996 335 SUPERFAMILY SSF47413 10 68 6.26E-19 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PA00058 c9ee42ee61bbdb4cf6b286ee25e91996 335 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 22 32 9.0E-6 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00058 c9ee42ee61bbdb4cf6b286ee25e91996 335 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 12 22 9.0E-6 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00058 c9ee42ee61bbdb4cf6b286ee25e91996 335 Gene3D G3DSA:3.40.50.2300 64 313 1.4E-80 T 12-10-2018 AMJ96_PA00058 c9ee42ee61bbdb4cf6b286ee25e91996 335 Pfam PF13377 Periplasmic binding protein-like domain 177 335 2.9E-38 T 12-10-2018 AMJ96_PA00058 c9ee42ee61bbdb4cf6b286ee25e91996 335 ProSitePatterns PS00356 LacI-type HTH domain signature. 13 31 - T 12-10-2018 AMJ96_CH02206 5c61c24008e2051871177488177e97f8 753 Gene3D G3DSA:3.20.20.450 496 748 2.2E-69 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH02206 5c61c24008e2051871177488177e97f8 753 SUPERFAMILY SSF55073 327 485 1.49E-39 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02206 5c61c24008e2051871177488177e97f8 753 Pfam PF00990 Diguanylate cyclase, GGDEF domain 323 478 1.6E-37 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH02206 5c61c24008e2051871177488177e97f8 753 Pfam PF00563 EAL domain 499 731 3.8E-60 T 12-10-2018 IPR001633 EAL domain AMJ96_CH02206 5c61c24008e2051871177488177e97f8 753 SMART SM01079 59 233 1.8E-44 T 12-10-2018 IPR006189 CHASE domain AMJ96_CH02206 5c61c24008e2051871177488177e97f8 753 SMART SM00052 493 736 2.4E-77 T 12-10-2018 IPR001633 EAL domain AMJ96_CH02206 5c61c24008e2051871177488177e97f8 753 Pfam PF03924 CHASE domain 106 223 1.9E-19 T 12-10-2018 IPR006189 CHASE domain AMJ96_CH02206 5c61c24008e2051871177488177e97f8 753 Gene3D G3DSA:3.30.70.270 316 495 7.5E-47 T 12-10-2018 AMJ96_CH02206 5c61c24008e2051871177488177e97f8 753 SUPERFAMILY SSF141868 499 741 3.66E-64 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH02206 5c61c24008e2051871177488177e97f8 753 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 318 482 8.9E-35 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH02206 5c61c24008e2051871177488177e97f8 753 SMART SM00267 311 483 8.1E-51 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH02206 5c61c24008e2051871177488177e97f8 753 Gene3D G3DSA:3.30.450.350 90 243 4.8E-7 T 12-10-2018 AMJ96_CH03110 42d5f01941c5daabe9373293ee07022f 261 Pfam PF01636 Phosphotransferase enzyme family 26 251 5.9E-28 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase AMJ96_CH03110 42d5f01941c5daabe9373293ee07022f 261 SUPERFAMILY SSF56112 10 261 1.5E-51 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily AMJ96_CH03110 42d5f01941c5daabe9373293ee07022f 261 Gene3D G3DSA:3.90.1200.10 92 261 5.1E-61 T 12-10-2018 AMJ96_CH03110 42d5f01941c5daabe9373293ee07022f 261 PIRSF PIRSF000706 2 261 1.1E-88 T 12-10-2018 IPR024165 Aminoglycoside 3-phosphotransferase GO:0005524|GO:0016773|GO:0046677 AMJ96_CH03110 42d5f01941c5daabe9373293ee07022f 261 Gene3D G3DSA:3.30.200.20 3 91 1.1E-27 T 12-10-2018 AMJ96_CH03599 f60d477691c53a9a46ea3aa292a88cb9 414 Gene3D G3DSA:3.40.50.2000 227 378 2.3E-28 T 12-10-2018 AMJ96_CH03599 f60d477691c53a9a46ea3aa292a88cb9 414 Pfam PF00534 Glycosyl transferases group 1 227 366 5.3E-20 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 AMJ96_CH03599 f60d477691c53a9a46ea3aa292a88cb9 414 SUPERFAMILY SSF53756 40 396 2.34E-53 T 12-10-2018 AMJ96_CH03599 f60d477691c53a9a46ea3aa292a88cb9 414 Pfam PF13439 Glycosyltransferase Family 4 52 225 2.1E-10 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMJ96_CH03599 f60d477691c53a9a46ea3aa292a88cb9 414 Gene3D G3DSA:3.40.50.2000 35 226 4.9E-5 T 12-10-2018 AMJ96_PA00060 d403d7534b12868cca47d1f5c2367ff1 328 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 121 326 9.2E-26 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PA00060 d403d7534b12868cca47d1f5c2367ff1 328 Gene3D G3DSA:1.10.3720.10 91 321 3.2E-12 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00060 d403d7534b12868cca47d1f5c2367ff1 328 SUPERFAMILY SSF161098 96 309 1.5E-11 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00816 1d17718bcedf52848df5125ef68403ed 474 Pfam PF07690 Major Facilitator Superfamily 9 400 1.0E-45 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH00816 1d17718bcedf52848df5125ef68403ed 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 154 178 4.6E-9 T 12-10-2018 AMJ96_CH00816 1d17718bcedf52848df5125ef68403ed 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 8 32 4.6E-9 T 12-10-2018 AMJ96_CH00816 1d17718bcedf52848df5125ef68403ed 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 99 119 4.6E-9 T 12-10-2018 AMJ96_CH00816 1d17718bcedf52848df5125ef68403ed 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 391 410 4.6E-9 T 12-10-2018 AMJ96_CH00816 1d17718bcedf52848df5125ef68403ed 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 129 153 4.6E-9 T 12-10-2018 AMJ96_CH00816 1d17718bcedf52848df5125ef68403ed 474 Gene3D G3DSA:1.20.1720.10 6 247 2.3E-49 T 12-10-2018 AMJ96_CH00816 1d17718bcedf52848df5125ef68403ed 474 Gene3D G3DSA:1.20.1250.20 249 449 6.3E-14 T 12-10-2018 AMJ96_CH00816 1d17718bcedf52848df5125ef68403ed 474 SUPERFAMILY SSF103473 4 446 2.49E-59 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH00816 1d17718bcedf52848df5125ef68403ed 474 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 8 410 1.2E-69 T 12-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 AMJ96_PB00295 71072ff2b67a8ddf08fda23a5d88175d 238 Pfam PF13545 Crp-like helix-turn-helix domain 162 234 1.5E-19 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_PB00295 71072ff2b67a8ddf08fda23a5d88175d 238 SUPERFAMILY SSF46785 160 235 1.47E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PB00295 71072ff2b67a8ddf08fda23a5d88175d 238 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 185 201 4.7E-13 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_PB00295 71072ff2b67a8ddf08fda23a5d88175d 238 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 201 216 4.7E-13 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_PB00295 71072ff2b67a8ddf08fda23a5d88175d 238 SMART SM00419 179 228 1.0E-17 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_PB00295 71072ff2b67a8ddf08fda23a5d88175d 238 Gene3D G3DSA:1.10.10.10 159 237 4.5E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PB00295 71072ff2b67a8ddf08fda23a5d88175d 238 Pfam PF00027 Cyclic nucleotide-binding domain 45 127 7.3E-8 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_PB00295 71072ff2b67a8ddf08fda23a5d88175d 238 SMART SM00100 27 142 1.2E-14 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_PB00295 71072ff2b67a8ddf08fda23a5d88175d 238 SUPERFAMILY SSF51206 22 157 1.13E-24 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like AMJ96_PB00295 71072ff2b67a8ddf08fda23a5d88175d 238 ProSitePatterns PS00042 Crp-type HTH domain signature. 187 210 - T 12-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 AMJ96_PB00295 71072ff2b67a8ddf08fda23a5d88175d 238 Gene3D G3DSA:2.60.120.10 41 158 1.8E-28 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH03033 8dad90afa6afd250a91012a799489881 313 SUPERFAMILY SSF53955 201 306 1.32E-25 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily AMJ96_CH03033 8dad90afa6afd250a91012a799489881 313 Gene3D G3DSA:1.10.530.10 187 311 3.7E-21 T 12-10-2018 AMJ96_CH03033 8dad90afa6afd250a91012a799489881 313 Pfam PF01464 Transglycosylase SLT domain 202 295 3.2E-16 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 AMJ96_PB00039 55d03de7d56becd93b9c47a5b1534679 272 Pfam PF00582 Universal stress protein family 151 270 3.7E-7 T 12-10-2018 IPR006016 UspA AMJ96_PB00039 55d03de7d56becd93b9c47a5b1534679 272 SUPERFAMILY SSF52402 150 271 3.85E-14 T 12-10-2018 AMJ96_PB00039 55d03de7d56becd93b9c47a5b1534679 272 PRINTS PR01438 Universal stress protein signature 232 244 5.4E-7 T 12-10-2018 IPR006015 Universal stress protein A AMJ96_PB00039 55d03de7d56becd93b9c47a5b1534679 272 PRINTS PR01438 Universal stress protein signature 250 272 5.4E-7 T 12-10-2018 IPR006015 Universal stress protein A AMJ96_PB00039 55d03de7d56becd93b9c47a5b1534679 272 PRINTS PR01438 Universal stress protein signature 150 168 5.4E-7 T 12-10-2018 IPR006015 Universal stress protein A AMJ96_PB00039 55d03de7d56becd93b9c47a5b1534679 272 Gene3D G3DSA:3.40.50.12370 14 272 1.9E-20 T 12-10-2018 AMJ96_PD00531 fc75e60868de86f9fdd618e9e2b2df52 312 Pfam PF01261 Xylose isomerase-like TIM barrel 59 259 2.7E-20 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMJ96_PD00531 fc75e60868de86f9fdd618e9e2b2df52 312 TIGRFAM TIGR04379 myo_inos_iolE: myo-inosose-2 dehydratase 13 309 3.0E-90 T 12-10-2018 IPR030823 IolE/MocC family KEGG: 00562+4.2.1.44 AMJ96_PD00531 fc75e60868de86f9fdd618e9e2b2df52 312 Gene3D G3DSA:3.20.20.150 8 310 7.6E-70 T 12-10-2018 AMJ96_PD00531 fc75e60868de86f9fdd618e9e2b2df52 312 SUPERFAMILY SSF51658 22 311 1.11E-46 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_PD00481 e620d22be3cedf76b03070b2ac63dbd4 303 SUPERFAMILY SSF51569 2 286 1.78E-81 T 12-10-2018 AMJ96_PD00481 e620d22be3cedf76b03070b2ac63dbd4 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 72 90 2.1E-15 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PD00481 e620d22be3cedf76b03070b2ac63dbd4 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 36 57 2.1E-15 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PD00481 e620d22be3cedf76b03070b2ac63dbd4 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 129 146 2.1E-15 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PD00481 e620d22be3cedf76b03070b2ac63dbd4 303 SMART SM01130 2 290 1.1E-86 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PD00481 e620d22be3cedf76b03070b2ac63dbd4 303 Pfam PF00701 Dihydrodipicolinate synthetase family 2 287 2.6E-58 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PD00481 e620d22be3cedf76b03070b2ac63dbd4 303 Gene3D G3DSA:3.20.20.70 1 295 9.6E-81 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_PD00481 e620d22be3cedf76b03070b2ac63dbd4 303 PIRSF PIRSF001365 1 301 1.6E-80 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH03833 fb51ad25eec58b2bd67fc9468b395c61 622 Gene3D G3DSA:1.25.40.10 501 619 1.3E-12 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03833 fb51ad25eec58b2bd67fc9468b395c61 622 SUPERFAMILY SSF48452 398 579 1.4E-23 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03833 fb51ad25eec58b2bd67fc9468b395c61 622 Gene3D G3DSA:3.30.70.1230 1 183 1.1E-57 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03833 fb51ad25eec58b2bd67fc9468b395c61 622 SUPERFAMILY SSF55073 2 176 2.83E-44 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03833 fb51ad25eec58b2bd67fc9468b395c61 622 Gene3D G3DSA:1.25.40.10 314 500 1.4E-25 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03833 fb51ad25eec58b2bd67fc9468b395c61 622 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 7 166 4.3E-14 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH03833 fb51ad25eec58b2bd67fc9468b395c61 622 Pfam PF13431 Tetratricopeptide repeat 541 570 5.5E-5 T 12-10-2018 AMJ96_CH03833 fb51ad25eec58b2bd67fc9468b395c61 622 Pfam PF13432 Tetratricopeptide repeat 424 474 1.6E-7 T 12-10-2018 AMJ96_CH03833 fb51ad25eec58b2bd67fc9468b395c61 622 SMART SM00028 550 583 1.7 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH03833 fb51ad25eec58b2bd67fc9468b395c61 622 SMART SM00028 407 440 0.2 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH03833 fb51ad25eec58b2bd67fc9468b395c61 622 SMART SM00028 441 474 3.7 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH04295 15969f789a474723ef6ae59f57f9b3bb 393 Gene3D G3DSA:2.40.110.10 130 221 2.2E-6 T 12-10-2018 AMJ96_CH04295 15969f789a474723ef6ae59f57f9b3bb 393 SUPERFAMILY SSF56645 18 215 2.23E-30 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMJ96_CH04295 15969f789a474723ef6ae59f57f9b3bb 393 Gene3D G3DSA:1.10.540.10 9 118 9.4E-20 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMJ96_CH04295 15969f789a474723ef6ae59f57f9b3bb 393 SUPERFAMILY SSF47203 231 376 2.42E-10 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMJ96_CH04295 15969f789a474723ef6ae59f57f9b3bb 393 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 243 366 1.5E-5 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMJ96_CH04295 15969f789a474723ef6ae59f57f9b3bb 393 PIRSF PIRSF016578 3 215 2.8E-16 T 12-10-2018 AMJ96_CH04295 15969f789a474723ef6ae59f57f9b3bb 393 PIRSF PIRSF016578 219 389 0.03 T 12-10-2018 AMJ96_CH04295 15969f789a474723ef6ae59f57f9b3bb 393 Gene3D G3DSA:1.20.140.10 229 378 1.4E-16 T 12-10-2018 AMJ96_CH04295 15969f789a474723ef6ae59f57f9b3bb 393 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 15 102 1.6E-8 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMJ96_CH03913 36726eee7f202aacb6527ad33840877a 386 Gene3D G3DSA:3.40.190.10 146 285 1.3E-53 T 12-10-2018 AMJ96_CH03913 36726eee7f202aacb6527ad33840877a 386 SUPERFAMILY SSF53850 35 358 5.18E-54 T 12-10-2018 AMJ96_CH03913 36726eee7f202aacb6527ad33840877a 386 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 278 297 1.6E-7 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMJ96_CH03913 36726eee7f202aacb6527ad33840877a 386 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 137 153 1.6E-7 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMJ96_CH03913 36726eee7f202aacb6527ad33840877a 386 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 63 84 1.6E-7 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMJ96_CH03913 36726eee7f202aacb6527ad33840877a 386 Gene3D G3DSA:3.40.190.10 40 330 1.3E-53 T 12-10-2018 AMJ96_CH03913 36726eee7f202aacb6527ad33840877a 386 Pfam PF13416 Bacterial extracellular solute-binding protein 58 332 9.1E-26 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH01740 b179c82fded2e57a5482c537e3cb86e5 129 Gene3D G3DSA:3.30.420.80 1 129 3.3E-55 T 12-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01740 b179c82fded2e57a5482c537e3cb86e5 129 Pfam PF00411 Ribosomal protein S11 19 128 9.9E-51 T 12-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01740 b179c82fded2e57a5482c537e3cb86e5 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 12-10-2018 IPR018102 Ribosomal S11, conserved site AMJ96_CH01740 b179c82fded2e57a5482c537e3cb86e5 129 PIRSF PIRSF002131 1 129 2.1E-52 T 12-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01740 b179c82fded2e57a5482c537e3cb86e5 129 SUPERFAMILY SSF53137 14 129 2.71E-49 T 12-10-2018 AMJ96_CH01740 b179c82fded2e57a5482c537e3cb86e5 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 1.2E-57 T 12-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01740 b179c82fded2e57a5482c537e3cb86e5 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 129 33.419 T 12-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01882 1bc0c38a2a1eb2af3718fe1e33b55e3d 344 SUPERFAMILY SSF51679 21 341 1.3E-73 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_CH01882 1bc0c38a2a1eb2af3718fe1e33b55e3d 344 TIGRFAM TIGR03858 LLM_2I7G: probable oxidoreductase, LLM family 2 340 1.7E-149 T 12-10-2018 IPR022290 Conserved hypothetical protein CHP03858, luciferase-like monooxygenase, putative AMJ96_CH01882 1bc0c38a2a1eb2af3718fe1e33b55e3d 344 Gene3D G3DSA:3.20.20.30 1 344 1.8E-83 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_CH01882 1bc0c38a2a1eb2af3718fe1e33b55e3d 344 Pfam PF00296 Luciferase-like monooxygenase 18 297 6.4E-49 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMJ96_CH02981 b7afe118db78bb4e6f272403b153b8c0 304 Gene3D G3DSA:3.30.70.1230 2 185 6.3E-52 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02981 b7afe118db78bb4e6f272403b153b8c0 304 SUPERFAMILY SSF55073 4 174 5.18E-47 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02981 b7afe118db78bb4e6f272403b153b8c0 304 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 9 159 4.8E-12 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH00983 44084e749add71c3b91abf40798928ca 321 SUPERFAMILY SSF56112 5 312 4.34E-85 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily AMJ96_CH00983 44084e749add71c3b91abf40798928ca 321 Pfam PF01636 Phosphotransferase enzyme family 28 255 1.4E-33 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase AMJ96_CH00983 44084e749add71c3b91abf40798928ca 321 Hamap MF_00301 Homoserine kinase [thrB]. 1 321 173.651 T 12-10-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 AMJ96_CH00983 44084e749add71c3b91abf40798928ca 321 Gene3D G3DSA:3.30.200.20 1 104 9.2E-37 T 12-10-2018 AMJ96_CH00983 44084e749add71c3b91abf40798928ca 321 TIGRFAM TIGR00938 thrB_alt: homoserine kinase 1 307 3.8E-121 T 12-10-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 AMJ96_CH00983 44084e749add71c3b91abf40798928ca 321 Gene3D G3DSA:3.90.1200.10 106 319 4.9E-92 T 12-10-2018 AMJ96_CH04365 161692bd902745a8b9ee8c5d8eff1ab6 460 Pfam PF01189 16S rRNA methyltransferase RsmB/F 267 456 4.3E-44 T 12-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 AMJ96_CH04365 161692bd902745a8b9ee8c5d8eff1ab6 460 SUPERFAMILY SSF53335 170 458 4.85E-56 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH04365 161692bd902745a8b9ee8c5d8eff1ab6 460 Pfam PF01029 NusB family 28 153 2.5E-21 T 12-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AMJ96_CH04365 161692bd902745a8b9ee8c5d8eff1ab6 460 SUPERFAMILY SSF48013 28 174 5.07E-28 T 12-10-2018 IPR035926 NusB-like superfamily AMJ96_CH04365 161692bd902745a8b9ee8c5d8eff1ab6 460 Gene3D G3DSA:1.10.940.10 26 166 1.0E-30 T 12-10-2018 IPR035926 NusB-like superfamily AMJ96_CH04365 161692bd902745a8b9ee8c5d8eff1ab6 460 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 268 278 1.3E-21 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMJ96_CH04365 161692bd902745a8b9ee8c5d8eff1ab6 460 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 379 395 1.3E-21 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMJ96_CH04365 161692bd902745a8b9ee8c5d8eff1ab6 460 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 329 341 1.3E-21 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMJ96_CH04365 161692bd902745a8b9ee8c5d8eff1ab6 460 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 441 458 1.3E-21 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMJ96_CH04365 161692bd902745a8b9ee8c5d8eff1ab6 460 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 239 253 1.3E-21 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMJ96_CH04365 161692bd902745a8b9ee8c5d8eff1ab6 460 Gene3D G3DSA:3.40.50.150 167 458 1.3E-64 T 12-10-2018 AMJ96_CH02599 604b808000c66498f3be662ca7e48f11 856 SUPERFAMILY SSF82861 561 645 2.22E-10 T 12-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AMJ96_CH02599 604b808000c66498f3be662ca7e48f11 856 SUPERFAMILY SSF82689 714 813 7.19E-26 T 12-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AMJ96_CH02599 604b808000c66498f3be662ca7e48f11 856 SUPERFAMILY SSF50182 646 712 7.19E-16 T 12-10-2018 IPR010920 LSM domain superfamily AMJ96_CH02599 604b808000c66498f3be662ca7e48f11 856 Pfam PF00924 Mechanosensitive ion channel 608 803 3.7E-48 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMJ96_CH02599 604b808000c66498f3be662ca7e48f11 856 Gene3D G3DSA:2.30.30.60 662 711 1.0E-11 T 12-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily AMJ96_CH02599 604b808000c66498f3be662ca7e48f11 856 Gene3D G3DSA:3.30.70.100 714 807 1.8E-21 T 12-10-2018 AMJ96_CH01793 cc531832f6ab5fbfa3ae197e95f14d18 453 Hamap MF_00334 Homogentisate 1,2-dioxygenase [hmgA]. 20 448 70.108 T 12-10-2018 IPR022950 Homogentisate 1,2-dioxygenase, bacterial GO:0004411|GO:0006559|GO:0006572|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5 AMJ96_CH01793 cc531832f6ab5fbfa3ae197e95f14d18 453 SUPERFAMILY SSF51182 19 448 2.76E-165 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH01793 cc531832f6ab5fbfa3ae197e95f14d18 453 TIGRFAM TIGR01015 hmgA: homogentisate 1,2-dioxygenase 19 446 1.2E-216 T 12-10-2018 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|Reactome: R-HSA-71182 AMJ96_CH01793 cc531832f6ab5fbfa3ae197e95f14d18 453 Gene3D G3DSA:2.60.120.10 281 417 4.1E-62 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH01793 cc531832f6ab5fbfa3ae197e95f14d18 453 Pfam PF04209 homogentisate 1,2-dioxygenase 20 446 9.9E-215 T 12-10-2018 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|Reactome: R-HSA-71182 AMJ96_CH03504 89f1b7caf8a06406c20a192ee463278b 214 Gene3D G3DSA:1.10.10.60 2 69 4.9E-23 T 12-10-2018 AMJ96_CH03504 89f1b7caf8a06406c20a192ee463278b 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 3.8E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH03504 89f1b7caf8a06406c20a192ee463278b 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 3.8E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH03504 89f1b7caf8a06406c20a192ee463278b 214 SUPERFAMILY SSF48498 87 211 3.74E-43 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH03504 89f1b7caf8a06406c20a192ee463278b 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 68 1.5E-13 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH03504 89f1b7caf8a06406c20a192ee463278b 214 Pfam PF08362 YcdC-like protein, C-terminal region 71 211 2.7E-59 T 12-10-2018 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 AMJ96_CH03504 89f1b7caf8a06406c20a192ee463278b 214 SUPERFAMILY SSF46689 10 90 6.8E-20 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03504 89f1b7caf8a06406c20a192ee463278b 214 Gene3D G3DSA:1.10.357.10 70 212 2.0E-49 T 12-10-2018 AMJ96_PD00052 98493c72d2bd79e4c08faf2951249969 313 Gene3D G3DSA:1.10.3720.10 69 312 1.2E-74 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00052 98493c72d2bd79e4c08faf2951249969 313 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 311 1.5E-20 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00052 98493c72d2bd79e4c08faf2951249969 313 SUPERFAMILY SSF161098 73 303 1.31E-63 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00266 a3a052762a033b354b9a70101dbe2e07 150 SMART SM00530 16 71 4.7E-15 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_PD00266 a3a052762a033b354b9a70101dbe2e07 150 SUPERFAMILY SSF47413 4 80 3.33E-27 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PD00266 a3a052762a033b354b9a70101dbe2e07 150 Pfam PF01381 Helix-turn-helix 17 70 1.8E-14 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_PD00266 a3a052762a033b354b9a70101dbe2e07 150 Gene3D G3DSA:1.10.260.40 1 78 9.6E-18 T 12-10-2018 AMJ96_CH03072 12a81df157183d11e91c3ed3cd4cc76e 133 SUPERFAMILY SSF88723 5 123 6.73E-17 T 12-10-2018 IPR029060 PIN-like domain superfamily AMJ96_CH03072 12a81df157183d11e91c3ed3cd4cc76e 133 Pfam PF01850 PIN domain 5 124 8.0E-11 T 12-10-2018 IPR002716 PIN domain AMJ96_CH03072 12a81df157183d11e91c3ed3cd4cc76e 133 Gene3D G3DSA:3.40.50.1010 2 128 1.0E-10 T 12-10-2018 AMJ96_PD00177 21f8f827fcf7dfbda7970db9ceb0cd8a 366 Gene3D G3DSA:3.40.50.2000 176 327 1.2E-8 T 12-10-2018 AMJ96_PD00177 21f8f827fcf7dfbda7970db9ceb0cd8a 366 SUPERFAMILY SSF53756 16 353 3.71E-14 T 12-10-2018 AMJ96_PD00177 21f8f827fcf7dfbda7970db9ceb0cd8a 366 Pfam PF13524 Glycosyl transferases group 1 256 348 1.1E-14 T 12-10-2018 AMJ96_PA00281 0bcd2d2d7a9cba096b3b28fde499aaaf 234 Gene3D G3DSA:1.10.10.10 129 228 3.7E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PA00281 0bcd2d2d7a9cba096b3b28fde499aaaf 234 SUPERFAMILY SSF46894 128 226 6.05E-25 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_PA00281 0bcd2d2d7a9cba096b3b28fde499aaaf 234 Gene3D G3DSA:3.40.50.2300 1 128 4.9E-38 T 12-10-2018 AMJ96_PA00281 0bcd2d2d7a9cba096b3b28fde499aaaf 234 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 226 1.4E-19 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_PA00281 0bcd2d2d7a9cba096b3b28fde499aaaf 234 Pfam PF00072 Response regulator receiver domain 5 114 2.5E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PA00281 0bcd2d2d7a9cba096b3b28fde499aaaf 234 SMART SM00862 151 226 4.0E-19 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_PA00281 0bcd2d2d7a9cba096b3b28fde499aaaf 234 SMART SM00448 3 113 3.4E-46 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PA00281 0bcd2d2d7a9cba096b3b28fde499aaaf 234 SUPERFAMILY SSF52172 3 122 1.85E-42 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH01260 b8d6278da00e37fe18725f7ba3412bbc 329 Gene3D G3DSA:1.20.1510.10 27 179 1.1E-17 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMJ96_CH01260 b8d6278da00e37fe18725f7ba3412bbc 329 Gene3D G3DSA:1.20.1510.10 182 254 4.0E-10 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMJ96_CH01260 b8d6278da00e37fe18725f7ba3412bbc 329 Pfam PF01545 Cation efflux family 32 254 2.0E-32 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMJ96_CH01260 b8d6278da00e37fe18725f7ba3412bbc 329 SUPERFAMILY SSF161111 26 255 3.14E-45 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMJ96_CH01260 b8d6278da00e37fe18725f7ba3412bbc 329 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 27 327 1.5E-69 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMJ96_CH00713 885ef7276b60442b3e8a7ff8922ade3f 303 Gene3D G3DSA:1.20.58.1830 5 32 1.2E-17 T 12-10-2018 AMJ96_CH00713 885ef7276b60442b3e8a7ff8922ade3f 303 Gene3D G3DSA:1.20.1330.10 44 177 1.2E-17 T 12-10-2018 AMJ96_CH00713 885ef7276b60442b3e8a7ff8922ade3f 303 PRINTS PR00207 Flagellin signature 36 53 4.7E-7 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AMJ96_CH00713 885ef7276b60442b3e8a7ff8922ade3f 303 PRINTS PR00207 Flagellin signature 107 130 4.7E-7 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AMJ96_CH00713 885ef7276b60442b3e8a7ff8922ade3f 303 PRINTS PR00207 Flagellin signature 75 94 4.7E-7 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AMJ96_CH00713 885ef7276b60442b3e8a7ff8922ade3f 303 Pfam PF00700 Bacterial flagellin C-terminal helical region 218 300 6.6E-17 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMJ96_CH00713 885ef7276b60442b3e8a7ff8922ade3f 303 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 137 1.3E-30 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMJ96_CH00713 885ef7276b60442b3e8a7ff8922ade3f 303 SUPERFAMILY SSF64518 1 302 1.7E-64 T 12-10-2018 AMJ96_CH02990 0d4a4c9dfba1cf3c904c8424478007fa 83 Pfam PF09932 Uncharacterized conserved protein (DUF2164) 4 76 2.3E-28 T 12-10-2018 IPR018680 Protein of unknown function DUF2164 AMJ96_PB00017 d2736b1684d96dd9f6b1d41a1f7312ff 234 SUPERFAMILY SSF48150 91 197 1.46E-5 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AMJ96_PB00017 d2736b1684d96dd9f6b1d41a1f7312ff 234 Gene3D G3DSA:1.10.1670.10 155 224 6.1E-15 T 12-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 AMJ96_PB00017 d2736b1684d96dd9f6b1d41a1f7312ff 234 Gene3D G3DSA:1.10.340.30 30 154 8.6E-27 T 12-10-2018 AMJ96_CH00692 1067f64390246863539f62cd03ee517c 194 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 116 189 2.1E-20 T 12-10-2018 IPR001543 Surface presentation of antigen (SpoA) AMJ96_CH00692 1067f64390246863539f62cd03ee517c 194 PRINTS PR00956 Flagellar motor switch protein FliN signature 116 132 1.2E-23 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AMJ96_CH00692 1067f64390246863539f62cd03ee517c 194 PRINTS PR00956 Flagellar motor switch protein FliN signature 133 149 1.2E-23 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AMJ96_CH00692 1067f64390246863539f62cd03ee517c 194 PRINTS PR00956 Flagellar motor switch protein FliN signature 162 177 1.2E-23 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AMJ96_CH00692 1067f64390246863539f62cd03ee517c 194 PRINTS PR00956 Flagellar motor switch protein FliN signature 149 162 1.2E-23 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AMJ96_CH00692 1067f64390246863539f62cd03ee517c 194 SUPERFAMILY SSF101801 113 192 2.62E-18 T 12-10-2018 IPR036429 SpoA-like superfamily AMJ96_CH00692 1067f64390246863539f62cd03ee517c 194 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 113 191 2.1E-28 T 12-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 AMJ96_CH00692 1067f64390246863539f62cd03ee517c 194 Gene3D G3DSA:2.30.330.10 107 194 5.1E-28 T 12-10-2018 IPR036429 SpoA-like superfamily AMJ96_CH00009 99c2910f3ee7e75931753e98c71aa8d3 373 SMART SM00925 106 264 1.3E-78 T 12-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 AMJ96_CH00009 99c2910f3ee7e75931753e98c71aa8d3 373 Pfam PF06725 3D domain 287 363 1.5E-21 T 12-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 AMJ96_CH00009 99c2910f3ee7e75931753e98c71aa8d3 373 SUPERFAMILY SSF50685 9 367 1.19E-119 T 12-10-2018 IPR036908 RlpA-like domain superfamily AMJ96_CH00009 99c2910f3ee7e75931753e98c71aa8d3 373 Pfam PF03562 MltA specific insert domain 21 264 6.2E-65 T 12-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 AMJ96_CH00009 99c2910f3ee7e75931753e98c71aa8d3 373 Gene3D G3DSA:2.40.240.50 105 273 2.4E-118 T 12-10-2018 AMJ96_CH00009 99c2910f3ee7e75931753e98c71aa8d3 373 PIRSF PIRSF019422 1 373 3.1E-111 T 12-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A AMJ96_CH00009 99c2910f3ee7e75931753e98c71aa8d3 373 Gene3D G3DSA:2.40.40.10 14 366 2.4E-118 T 12-10-2018 IPR036908 RlpA-like domain superfamily AMJ96_CH01004 4322b2437c69b03ddd31f193fea979f9 299 SUPERFAMILY SSF53850 92 293 6.88E-37 T 12-10-2018 AMJ96_CH01004 4322b2437c69b03ddd31f193fea979f9 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 1.7E-13 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01004 4322b2437c69b03ddd31f193fea979f9 299 Gene3D G3DSA:3.40.190.10 93 290 3.2E-55 T 12-10-2018 AMJ96_CH01004 4322b2437c69b03ddd31f193fea979f9 299 SUPERFAMILY SSF46785 2 80 2.72E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01004 4322b2437c69b03ddd31f193fea979f9 299 Gene3D G3DSA:3.40.190.10 168 266 3.2E-55 T 12-10-2018 AMJ96_CH01004 4322b2437c69b03ddd31f193fea979f9 299 Pfam PF03466 LysR substrate binding domain 92 294 1.9E-24 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH01004 4322b2437c69b03ddd31f193fea979f9 299 Gene3D G3DSA:1.10.10.10 1 83 2.9E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00006 8a9a109f6c94ff6e9969c624c076bda5 129 Gene3D G3DSA:1.10.1660.10 1 124 4.2E-37 T 12-10-2018 AMJ96_PC00006 8a9a109f6c94ff6e9969c624c076bda5 129 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 2.0E-6 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_PC00006 8a9a109f6c94ff6e9969c624c076bda5 129 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 2.0E-6 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_PC00006 8a9a109f6c94ff6e9969c624c076bda5 129 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 2.0E-6 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_PC00006 8a9a109f6c94ff6e9969c624c076bda5 129 SMART SM00422 1 69 2.4E-28 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_PC00006 8a9a109f6c94ff6e9969c624c076bda5 129 Pfam PF00376 MerR family regulatory protein 2 38 8.8E-16 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_PC00006 8a9a109f6c94ff6e9969c624c076bda5 129 SUPERFAMILY SSF46955 1 125 6.96E-37 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily AMJ96_PC00006 8a9a109f6c94ff6e9969c624c076bda5 129 Pfam PF09278 MerR, DNA binding 43 107 3.5E-20 T 12-10-2018 IPR015358 Transcription regulator MerR, DNA binding AMJ96_PC00006 8a9a109f6c94ff6e9969c624c076bda5 129 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 125 6.4E-49 T 12-10-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 AMJ96_CH02861 f77e88c4691c641dd9296bf23e0467ef 231 Gene3D G3DSA:3.90.850.10 4 231 3.9E-83 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMJ96_CH02861 f77e88c4691c641dd9296bf23e0467ef 231 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 30 229 1.5E-47 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 AMJ96_CH02861 f77e88c4691c641dd9296bf23e0467ef 231 SUPERFAMILY SSF56529 24 231 5.89E-67 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMJ96_CH00468 4fb035aba1cf0cbc016179efe3d4122c 425 Pfam PF05990 Alpha/beta hydrolase of unknown function (DUF900) 121 343 4.0E-86 T 12-10-2018 IPR010297 Protein of unknown function DUF900, hydrolase-like AMJ96_CH00468 4fb035aba1cf0cbc016179efe3d4122c 425 SUPERFAMILY SSF53474 130 296 1.07E-15 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH00468 4fb035aba1cf0cbc016179efe3d4122c 425 Gene3D G3DSA:3.40.50.1820 132 349 2.0E-10 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH00468 4fb035aba1cf0cbc016179efe3d4122c 425 PIRSF PIRSF033909 6 374 7.8E-149 T 12-10-2018 IPR014586 Uncharacterised conserved protein UCP033909 AMJ96_CH03935 310157301abf275a84ae391cb575dee9 332 SUPERFAMILY SSF52540 4 242 8.34E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03935 310157301abf275a84ae391cb575dee9 332 Gene3D G3DSA:2.40.50.140 262 317 1.3E-10 T 12-10-2018 AMJ96_CH03935 310157301abf275a84ae391cb575dee9 332 Pfam PF03459 TOBE domain 269 323 1.4E-10 T 12-10-2018 IPR005116 Transport-associated OB, type 1 AMJ96_CH03935 310157301abf275a84ae391cb575dee9 332 SUPERFAMILY SSF50331 236 329 3.89E-22 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH03935 310157301abf275a84ae391cb575dee9 332 Gene3D G3DSA:2.40.50.940 252 326 1.3E-10 T 12-10-2018 AMJ96_CH03935 310157301abf275a84ae391cb575dee9 332 Pfam PF00005 ABC transporter 22 161 2.5E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03935 310157301abf275a84ae391cb575dee9 332 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03935 310157301abf275a84ae391cb575dee9 332 SMART SM00382 28 211 8.5E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03935 310157301abf275a84ae391cb575dee9 332 Gene3D G3DSA:2.40.50.940 222 248 8.4E-12 T 12-10-2018 AMJ96_CH03935 310157301abf275a84ae391cb575dee9 332 Gene3D G3DSA:3.40.50.300 3 221 4.9E-64 T 12-10-2018 AMJ96_PB00146 1c18dd9c72b6be6625c2feaacee577b1 344 Pfam PF12833 Helix-turn-helix domain 243 322 2.3E-25 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PB00146 1c18dd9c72b6be6625c2feaacee577b1 344 Pfam PF14525 AraC-binding-like domain 35 197 7.4E-9 T 12-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like AMJ96_PB00146 1c18dd9c72b6be6625c2feaacee577b1 344 SUPERFAMILY SSF46689 221 269 1.32E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PB00146 1c18dd9c72b6be6625c2feaacee577b1 344 Gene3D G3DSA:1.10.10.60 221 325 5.6E-34 T 12-10-2018 AMJ96_PB00146 1c18dd9c72b6be6625c2feaacee577b1 344 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 274 318 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_PB00146 1c18dd9c72b6be6625c2feaacee577b1 344 SMART SM00342 237 322 2.1E-26 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PB00146 1c18dd9c72b6be6625c2feaacee577b1 344 SUPERFAMILY SSF46689 273 321 9.88E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PA00035 b01297f39a3248e677f847b1b506b2d9 484 Gene3D G3DSA:3.40.605.10 29 472 2.9E-179 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_PA00035 b01297f39a3248e677f847b1b506b2d9 484 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMJ96_PA00035 b01297f39a3248e677f847b1b506b2d9 484 SUPERFAMILY SSF53720 8 481 3.8E-167 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_PA00035 b01297f39a3248e677f847b1b506b2d9 484 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 30 476 2.5E-212 T 12-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 AMJ96_PA00035 b01297f39a3248e677f847b1b506b2d9 484 Pfam PF00171 Aldehyde dehydrogenase family 19 478 1.4E-168 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_PA00035 b01297f39a3248e677f847b1b506b2d9 484 Gene3D G3DSA:3.40.309.10 258 447 2.9E-179 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_PA00035 b01297f39a3248e677f847b1b506b2d9 484 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMJ96_CH02937 4758360afd2f0cbb753ef3ce5ad0eb33 159 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 30 78 8.0E-15 T 12-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMJ96_CH02937 4758360afd2f0cbb753ef3ce5ad0eb33 159 SUPERFAMILY SSF69118 4 145 8.19E-46 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_CH02937 4758360afd2f0cbb753ef3ce5ad0eb33 159 Pfam PF02627 Carboxymuconolactone decarboxylase family 12 93 1.1E-19 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMJ96_CH02937 4758360afd2f0cbb753ef3ce5ad0eb33 159 Gene3D G3DSA:1.20.1290.10 1 149 3.8E-48 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_CH03534 0445657811c388ba2655ae3243d1a71f 1127 Pfam PF00512 His Kinase A (phospho-acceptor) domain 677 742 3.5E-15 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH03534 0445657811c388ba2655ae3243d1a71f 1127 Gene3D G3DSA:3.30.565.10 741 902 2.5E-43 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH03534 0445657811c388ba2655ae3243d1a71f 1127 SMART SM00388 676 742 8.5E-19 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH03534 0445657811c388ba2655ae3243d1a71f 1127 SUPERFAMILY SSF55874 732 896 2.49E-40 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH03534 0445657811c388ba2655ae3243d1a71f 1127 PRINTS PR00344 Bacterial sensor protein C-terminal signature 860 878 1.2E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03534 0445657811c388ba2655ae3243d1a71f 1127 PRINTS PR00344 Bacterial sensor protein C-terminal signature 843 853 1.2E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03534 0445657811c388ba2655ae3243d1a71f 1127 PRINTS PR00344 Bacterial sensor protein C-terminal signature 884 897 1.2E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03534 0445657811c388ba2655ae3243d1a71f 1127 PRINTS PR00344 Bacterial sensor protein C-terminal signature 825 839 1.2E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03534 0445657811c388ba2655ae3243d1a71f 1127 Pfam PF00072 Response regulator receiver domain 923 1032 6.8E-19 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03534 0445657811c388ba2655ae3243d1a71f 1127 Gene3D G3DSA:1.10.287.130 640 740 3.1E-23 T 12-10-2018 AMJ96_CH03534 0445657811c388ba2655ae3243d1a71f 1127 SMART SM00448 921 1032 2.8E-18 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03534 0445657811c388ba2655ae3243d1a71f 1127 Gene3D G3DSA:3.40.50.12740 921 1093 1.8E-24 T 12-10-2018 AMJ96_CH03534 0445657811c388ba2655ae3243d1a71f 1127 SUPERFAMILY SSF47384 662 743 4.32E-20 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH03534 0445657811c388ba2655ae3243d1a71f 1127 SMART SM00387 789 900 7.0E-32 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH03534 0445657811c388ba2655ae3243d1a71f 1127 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 789 898 2.0E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH03534 0445657811c388ba2655ae3243d1a71f 1127 SUPERFAMILY SSF52172 919 1041 9.39E-29 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH02241 63d0a863161153e2c871c229980a8435 401 Gene3D G3DSA:1.10.580.10 209 377 2.7E-38 T 12-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMJ96_CH02241 63d0a863161153e2c871c229980a8435 401 Gene3D G3DSA:1.10.580.10 97 155 1.1E-5 T 12-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMJ96_CH02241 63d0a863161153e2c871c229980a8435 401 Gene3D G3DSA:1.10.230.10 264 351 2.7E-38 T 12-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain AMJ96_CH02241 63d0a863161153e2c871c229980a8435 401 Pfam PF00285 Citrate synthase, C-terminal domain 92 387 2.6E-49 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 AMJ96_CH02241 63d0a863161153e2c871c229980a8435 401 SUPERFAMILY SSF48256 52 395 6.54E-61 T 12-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 AMJ96_CH02241 63d0a863161153e2c871c229980a8435 401 PRINTS PR00143 Citrate synthase signature 290 310 2.0E-11 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 AMJ96_CH02241 63d0a863161153e2c871c229980a8435 401 PRINTS PR00143 Citrate synthase signature 216 231 2.0E-11 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 AMJ96_CH02241 63d0a863161153e2c871c229980a8435 401 PRINTS PR00143 Citrate synthase signature 238 266 2.0E-11 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 AMJ96_CH02525 fcdd5111fd5453f88e38869947b3c35b 314 Gene3D G3DSA:1.10.3720.10 32 301 8.7E-53 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02525 fcdd5111fd5453f88e38869947b3c35b 314 SUPERFAMILY SSF161098 37 314 1.59E-62 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02525 fcdd5111fd5453f88e38869947b3c35b 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 129 307 2.5E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00850 dddc32803ffcca3faeb491f1eeb73e3e 545 PRINTS PR00298 60kDa chaperonin signature 27 53 1.5E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_CH00850 dddc32803ffcca3faeb491f1eeb73e3e 545 PRINTS PR00298 60kDa chaperonin signature 83 110 1.5E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_CH00850 dddc32803ffcca3faeb491f1eeb73e3e 545 PRINTS PR00298 60kDa chaperonin signature 398 419 1.5E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_CH00850 dddc32803ffcca3faeb491f1eeb73e3e 545 PRINTS PR00298 60kDa chaperonin signature 268 291 1.5E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_CH00850 dddc32803ffcca3faeb491f1eeb73e3e 545 PRINTS PR00298 60kDa chaperonin signature 350 375 1.5E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_CH00850 dddc32803ffcca3faeb491f1eeb73e3e 545 Gene3D G3DSA:1.10.560.10 8 521 1.9E-238 T 12-10-2018 IPR027413 GroEL-like equatorial domain superfamily AMJ96_CH00850 dddc32803ffcca3faeb491f1eeb73e3e 545 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 4.4E-100 T 12-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 AMJ96_CH00850 dddc32803ffcca3faeb491f1eeb73e3e 545 SUPERFAMILY SSF52029 184 376 1.21E-86 T 12-10-2018 IPR027409 GroEL-like apical domain superfamily AMJ96_CH00850 dddc32803ffcca3faeb491f1eeb73e3e 545 Hamap MF_00600 60 kDa chaperonin [groL]. 2 542 42.397 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_CH00850 dddc32803ffcca3faeb491f1eeb73e3e 545 Gene3D G3DSA:3.30.260.10 138 410 1.9E-238 T 12-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily AMJ96_CH00850 dddc32803ffcca3faeb491f1eeb73e3e 545 Gene3D G3DSA:3.50.7.10 173 379 1.9E-238 T 12-10-2018 IPR027409 GroEL-like apical domain superfamily AMJ96_CH00850 dddc32803ffcca3faeb491f1eeb73e3e 545 SUPERFAMILY SSF48592 6 521 1.42E-77 T 12-10-2018 IPR027413 GroEL-like equatorial domain superfamily AMJ96_CH00850 dddc32803ffcca3faeb491f1eeb73e3e 545 SUPERFAMILY SSF54849 138 203 2.01E-22 T 12-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily AMJ96_CH00850 dddc32803ffcca3faeb491f1eeb73e3e 545 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 1.2E-256 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_CH00850 dddc32803ffcca3faeb491f1eeb73e3e 545 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 12-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_CH04216 61c11c94140ea951a427e32a8ce492f4 227 SUPERFAMILY SSF52172 2 184 3.27E-37 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH04216 61c11c94140ea951a427e32a8ce492f4 227 SMART SM00448 4 116 1.2E-35 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH04216 61c11c94140ea951a427e32a8ce492f4 227 SMART SM00862 150 225 3.9E-19 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH04216 61c11c94140ea951a427e32a8ce492f4 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 225 1.4E-21 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH04216 61c11c94140ea951a427e32a8ce492f4 227 Gene3D G3DSA:3.40.50.2300 1 128 2.1E-33 T 12-10-2018 AMJ96_CH04216 61c11c94140ea951a427e32a8ce492f4 227 Gene3D G3DSA:1.10.10.10 129 226 2.9E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH04216 61c11c94140ea951a427e32a8ce492f4 227 Pfam PF00072 Response regulator receiver domain 6 117 2.4E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01680 ba2b8e667ad62ef5122e0e12c353bad2 342 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 330 36.161 T 12-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 AMJ96_CH01680 ba2b8e667ad62ef5122e0e12c353bad2 342 Gene3D G3DSA:3.30.160.20 190 285 1.7E-97 T 12-10-2018 AMJ96_CH01680 ba2b8e667ad62ef5122e0e12c353bad2 342 SMART SM00937 49 159 8.8E-55 T 12-10-2018 IPR005139 Peptide chain release factor GO:0006415 AMJ96_CH01680 ba2b8e667ad62ef5122e0e12c353bad2 342 SUPERFAMILY SSF75620 2 330 3.27E-129 T 12-10-2018 AMJ96_CH01680 ba2b8e667ad62ef5122e0e12c353bad2 342 Gene3D G3DSA:1.20.58.410 1 79 1.8E-18 T 12-10-2018 AMJ96_CH01680 ba2b8e667ad62ef5122e0e12c353bad2 342 Gene3D G3DSA:3.30.70.1660 94 323 1.7E-97 T 12-10-2018 AMJ96_CH01680 ba2b8e667ad62ef5122e0e12c353bad2 342 Pfam PF03462 PCRF domain 1 184 5.0E-56 T 12-10-2018 IPR005139 Peptide chain release factor GO:0006415 AMJ96_CH01680 ba2b8e667ad62ef5122e0e12c353bad2 342 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 209 225 - T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMJ96_CH01680 ba2b8e667ad62ef5122e0e12c353bad2 342 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 1 328 6.0E-149 T 12-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 AMJ96_CH01680 ba2b8e667ad62ef5122e0e12c353bad2 342 Pfam PF00472 RF-1 domain 193 302 1.2E-42 T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AMJ96_CH01274 b3efcaaf028784f70f38c240f1347599 286 Gene3D G3DSA:3.10.180.10 172 286 5.6E-21 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01274 b3efcaaf028784f70f38c240f1347599 286 Gene3D G3DSA:3.10.180.10 14 139 2.4E-22 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01274 b3efcaaf028784f70f38c240f1347599 286 SUPERFAMILY SSF54593 172 284 2.69E-23 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01274 b3efcaaf028784f70f38c240f1347599 286 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 174 265 3.1E-7 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH01274 b3efcaaf028784f70f38c240f1347599 286 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 16 127 5.5E-6 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH01274 b3efcaaf028784f70f38c240f1347599 286 SUPERFAMILY SSF54593 7 172 7.65E-35 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH00710 9afc776e2aae914960192b8b0cb56c4f 638 Gene3D G3DSA:3.40.50.2000 414 593 1.5E-122 T 12-10-2018 AMJ96_CH00710 9afc776e2aae914960192b8b0cb56c4f 638 SUPERFAMILY SSF53756 271 607 1.73E-10 T 12-10-2018 AMJ96_CH00710 9afc776e2aae914960192b8b0cb56c4f 638 Pfam PF13844 Glycosyl transferase family 41 256 404 3.9E-21 T 12-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMJ96_CH00710 9afc776e2aae914960192b8b0cb56c4f 638 Pfam PF13844 Glycosyl transferase family 41 418 610 3.1E-50 T 12-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 AMJ96_CH00710 9afc776e2aae914960192b8b0cb56c4f 638 Gene3D G3DSA:3.40.50.11380 249 599 1.5E-122 T 12-10-2018 AMJ96_CH00710 9afc776e2aae914960192b8b0cb56c4f 638 SUPERFAMILY SSF48452 10 136 8.1E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_PC00210 74feab51c43c8a3e688bd390ddedca0b 229 Gene3D G3DSA:3.40.1080.10 9 221 4.2E-81 T 12-10-2018 AMJ96_PC00210 74feab51c43c8a3e688bd390ddedca0b 229 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 12 217 1.0E-92 T 12-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 AMJ96_PC00210 74feab51c43c8a3e688bd390ddedca0b 229 SUPERFAMILY SSF100950 14 221 1.61E-60 T 12-10-2018 IPR037171 NagB/RpiA transferase-like AMJ96_PC00210 74feab51c43c8a3e688bd390ddedca0b 229 SMART SM00882 14 210 1.9E-51 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMJ96_PC00210 74feab51c43c8a3e688bd390ddedca0b 229 Pfam PF01144 Coenzyme A transferase 16 191 1.1E-29 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 AMJ96_CH01054 3d7b541208e099609f941a97e0080306 131 SUPERFAMILY SSF46785 21 126 1.5E-30 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01054 3d7b541208e099609f941a97e0080306 131 Pfam PF01638 HxlR-like helix-turn-helix 31 117 2.4E-28 T 12-10-2018 IPR002577 Helix-turn-helix, HxlR type AMJ96_CH01054 3d7b541208e099609f941a97e0080306 131 Gene3D G3DSA:1.10.10.10 4 129 4.8E-39 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00127 2302f1ebd774a346b9978a53c03db14b 201 Gene3D G3DSA:3.40.1360.10 80 201 3.9E-41 T 12-10-2018 AMJ96_CH00127 2302f1ebd774a346b9978a53c03db14b 201 Pfam PF13662 Toprim domain 83 174 4.9E-25 T 12-10-2018 IPR006171 TOPRIM domain AMJ96_CH00127 2302f1ebd774a346b9978a53c03db14b 201 Pfam PF02132 RecR protein 45 81 4.0E-13 T 12-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger AMJ96_CH00127 2302f1ebd774a346b9978a53c03db14b 201 SUPERFAMILY SSF111304 8 201 1.57E-69 T 12-10-2018 IPR023627 Recombination protein RecR AMJ96_CH00127 2302f1ebd774a346b9978a53c03db14b 201 Hamap MF_00017 Recombination protein RecR [recR]. 1 201 93.796 T 12-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 AMJ96_CH00127 2302f1ebd774a346b9978a53c03db14b 201 TIGRFAM TIGR00615 recR: recombination protein RecR 8 198 9.5E-64 T 12-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 AMJ96_CH00127 2302f1ebd774a346b9978a53c03db14b 201 Gene3D G3DSA:1.10.8.420 6 55 3.4E-10 T 12-10-2018 AMJ96_CH00127 2302f1ebd774a346b9978a53c03db14b 201 ProSitePatterns PS01300 RecR protein signature. 60 81 - T 12-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 AMJ96_CH00127 2302f1ebd774a346b9978a53c03db14b 201 SMART SM00493 83 168 1.3E-5 T 12-10-2018 IPR006171 TOPRIM domain AMJ96_PD00158 5857c6e195f08ec8a7dd27d10d9e2fe0 658 Pfam PF05139 Erythromycin esterase 286 635 1.4E-112 T 12-10-2018 IPR007815 Erythromycin esterase GO:0046677 AMJ96_PD00158 5857c6e195f08ec8a7dd27d10d9e2fe0 658 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 5 207 7.5E-63 T 12-10-2018 AMJ96_PD00158 5857c6e195f08ec8a7dd27d10d9e2fe0 658 SUPERFAMILY SSF159501 231 641 2.44E-132 T 12-10-2018 AMJ96_PD00158 5857c6e195f08ec8a7dd27d10d9e2fe0 658 Gene3D G3DSA:3.40.50.150 1 217 9.2E-77 T 12-10-2018 AMJ96_PD00158 5857c6e195f08ec8a7dd27d10d9e2fe0 658 Gene3D G3DSA:1.20.1440.30 366 496 4.9E-65 T 12-10-2018 AMJ96_PD00158 5857c6e195f08ec8a7dd27d10d9e2fe0 658 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 1 210 38.902 T 12-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 AMJ96_PD00158 5857c6e195f08ec8a7dd27d10d9e2fe0 658 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 130 145 - T 12-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 AMJ96_PD00158 5857c6e195f08ec8a7dd27d10d9e2fe0 658 PIRSF PIRSF036794 211 646 1.4E-114 T 12-10-2018 IPR014622 Uncharacterised conserved protein UCP036794, erythromycin esterase-type AMJ96_PD00158 5857c6e195f08ec8a7dd27d10d9e2fe0 658 SUPERFAMILY SSF53335 3 206 3.1E-47 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_PD00158 5857c6e195f08ec8a7dd27d10d9e2fe0 658 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 3 208 1.2E-68 T 12-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 AMJ96_PD00158 5857c6e195f08ec8a7dd27d10d9e2fe0 658 Gene3D G3DSA:3.40.1660.10 246 636 4.9E-65 T 12-10-2018 AMJ96_PD00158 5857c6e195f08ec8a7dd27d10d9e2fe0 658 Gene3D G3DSA:3.30.1870.10 288 365 4.9E-65 T 12-10-2018 AMJ96_CH02143 2560752d3856a7fd1d1fa5cc25397256 358 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 27 311 1.4E-51 T 12-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 AMJ96_CH02143 2560752d3856a7fd1d1fa5cc25397256 358 Gene3D G3DSA:3.40.50.2300 29 285 1.9E-130 T 12-10-2018 AMJ96_CH02143 2560752d3856a7fd1d1fa5cc25397256 358 Gene3D G3DSA:3.40.50.2300 132 347 1.9E-130 T 12-10-2018 AMJ96_CH03774 a0625e2ad74486f78fb557bc63f78888 57 Pfam PF04325 Protein of unknown function (DUF465) 8 53 1.6E-12 T 12-10-2018 IPR007420 Protein of unknown function DUF465 AMJ96_CH03774 a0625e2ad74486f78fb557bc63f78888 57 Gene3D G3DSA:1.20.58.660 2 56 1.9E-7 T 12-10-2018 AMJ96_CH03225 fa5151cd5c59cd7637e7ee259d7fad2f 194 Pfam PF00574 Clp protease 21 190 2.7E-68 T 12-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AMJ96_CH03225 fa5151cd5c59cd7637e7ee259d7fad2f 194 PRINTS PR00127 Clp protease catalytic subunit P signature 18 33 1.3E-29 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMJ96_CH03225 fa5151cd5c59cd7637e7ee259d7fad2f 194 PRINTS PR00127 Clp protease catalytic subunit P signature 57 77 1.3E-29 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMJ96_CH03225 fa5151cd5c59cd7637e7ee259d7fad2f 194 PRINTS PR00127 Clp protease catalytic subunit P signature 109 128 1.3E-29 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMJ96_CH03225 fa5151cd5c59cd7637e7ee259d7fad2f 194 PRINTS PR00127 Clp protease catalytic subunit P signature 88 105 1.3E-29 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMJ96_CH03225 fa5151cd5c59cd7637e7ee259d7fad2f 194 PRINTS PR00127 Clp protease catalytic subunit P signature 166 185 1.3E-29 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMJ96_CH03225 fa5151cd5c59cd7637e7ee259d7fad2f 194 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 110 123 - T 12-10-2018 IPR033135 ClpP, histidine active site AMJ96_CH03225 fa5151cd5c59cd7637e7ee259d7fad2f 194 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 5 191 34.723 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMJ96_CH03225 fa5151cd5c59cd7637e7ee259d7fad2f 194 SUPERFAMILY SSF52096 22 191 2.19E-57 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_CH03225 fa5151cd5c59cd7637e7ee259d7fad2f 194 Gene3D G3DSA:3.90.226.10 7 194 1.4E-62 T 12-10-2018 AMJ96_PC00351 2ab961231f88e12636f998f30b2afaf9 277 Gene3D G3DSA:3.40.1190.20 2 273 5.1E-101 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_PC00351 2ab961231f88e12636f998f30b2afaf9 277 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 5 269 1.5E-95 T 12-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMJ96_PC00351 2ab961231f88e12636f998f30b2afaf9 277 SUPERFAMILY SSF53613 2 273 2.49E-79 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_PC00351 2ab961231f88e12636f998f30b2afaf9 277 Pfam PF08543 Phosphomethylpyrimidine kinase 12 267 1.2E-90 T 12-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AMJ96_CH03199 79105007e413a09ec353146d06d06a22 637 ProSitePatterns PS00211 ABC transporters family signature. 513 527 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03199 79105007e413a09ec353146d06d06a22 637 Pfam PF00005 ABC transporter 388 541 2.1E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03199 79105007e413a09ec353146d06d06a22 637 Gene3D G3DSA:1.20.1560.10 13 352 9.3E-30 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH03199 79105007e413a09ec353146d06d06a22 637 SUPERFAMILY SSF52540 359 611 2.86E-87 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03199 79105007e413a09ec353146d06d06a22 637 SMART SM00382 396 587 2.9E-21 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03199 79105007e413a09ec353146d06d06a22 637 Pfam PF00664 ABC transporter transmembrane region 48 315 1.1E-6 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_CH03199 79105007e413a09ec353146d06d06a22 637 SUPERFAMILY SSF90123 26 351 1.31E-42 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH03199 79105007e413a09ec353146d06d06a22 637 Gene3D G3DSA:3.40.50.300 360 619 1.1E-90 T 12-10-2018 AMJ96_PC00451 7aad3410f825b87b0b7a2b1a4a8f874e 298 SUPERFAMILY SSF55811 12 135 2.64E-12 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_PC00451 7aad3410f825b87b0b7a2b1a4a8f874e 298 Gene3D G3DSA:1.10.10.10 214 287 6.2E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00451 7aad3410f825b87b0b7a2b1a4a8f874e 298 SUPERFAMILY SSF46785 216 286 3.72E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00451 7aad3410f825b87b0b7a2b1a4a8f874e 298 PIRSF PIRSF019423 1 298 1.9E-142 T 12-10-2018 IPR011213 Nicotinic acid mononucleotide biosynthesis protein AMJ96_CH03685 f803a84b93cf7c5693a8c432d11cde2a 238 SMART SM00382 30 211 2.6E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03685 f803a84b93cf7c5693a8c432d11cde2a 238 SUPERFAMILY SSF52540 6 227 1.25E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03685 f803a84b93cf7c5693a8c432d11cde2a 238 Gene3D G3DSA:3.40.50.300 3 235 2.9E-60 T 12-10-2018 AMJ96_CH03685 f803a84b93cf7c5693a8c432d11cde2a 238 Pfam PF00005 ABC transporter 21 161 7.0E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02852 929226773188d2490c779f4de593817d 241 Gene3D G3DSA:3.40.50.720 4 240 1.7E-63 T 12-10-2018 AMJ96_CH02852 929226773188d2490c779f4de593817d 241 SUPERFAMILY SSF51735 4 238 1.08E-61 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02852 929226773188d2490c779f4de593817d 241 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 237 2.4E-46 T 12-10-2018 AMJ96_CH02852 929226773188d2490c779f4de593817d 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 7.1E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02852 929226773188d2490c779f4de593817d 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 7.1E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02852 929226773188d2490c779f4de593817d 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 7.1E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02852 929226773188d2490c779f4de593817d 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 7.1E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02852 929226773188d2490c779f4de593817d 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 7.1E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02852 929226773188d2490c779f4de593817d 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 7.1E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02852 929226773188d2490c779f4de593817d 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 2.2E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02852 929226773188d2490c779f4de593817d 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 2.2E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02852 929226773188d2490c779f4de593817d 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 2.2E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00865 8b02d625542f8c88c21d651adc69e1e8 82 Pfam PF13773 Domain of unknown function (DUF4170) 8 75 1.2E-39 T 12-10-2018 IPR025226 Protein of unknown function DUF4170 AMJ96_CH00865 8b02d625542f8c88c21d651adc69e1e8 82 Gene3D G3DSA:3.30.70.2400 6 78 6.3E-34 T 12-10-2018 AMJ96_PC00425 be5b1abe933267ed6666074a3bdd36c0 435 Gene3D G3DSA:3.30.590.10 100 434 3.2E-107 T 12-10-2018 AMJ96_PC00425 be5b1abe933267ed6666074a3bdd36c0 435 Gene3D G3DSA:3.10.20.70 2 98 3.9E-9 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_PC00425 be5b1abe933267ed6666074a3bdd36c0 435 Pfam PF00120 Glutamine synthetase, catalytic domain 98 430 2.9E-107 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_PC00425 be5b1abe933267ed6666074a3bdd36c0 435 SMART SM01230 97 349 2.3E-105 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_PC00425 be5b1abe933267ed6666074a3bdd36c0 435 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 225 240 - T 12-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMJ96_PC00425 be5b1abe933267ed6666074a3bdd36c0 435 SUPERFAMILY SSF55931 98 434 2.88E-102 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMJ96_PC00425 be5b1abe933267ed6666074a3bdd36c0 435 TIGRFAM TIGR03105 gln_synth_III: glutamine synthetase, type III 6 434 4.3E-208 T 12-10-2018 IPR017536 Glutamine synthetase, type III AMJ96_PC00425 be5b1abe933267ed6666074a3bdd36c0 435 SUPERFAMILY SSF54368 4 96 3.01E-21 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH01941 8f258af164bb4bf65fc67b88df4abd8f 600 SUPERFAMILY SSF64182 75 475 1.11E-109 T 12-10-2018 IPR038763 DHH phosphoesterase superfamily AMJ96_CH01941 8f258af164bb4bf65fc67b88df4abd8f 600 Pfam PF02272 DHHA1 domain 343 467 1.3E-20 T 12-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 AMJ96_CH01941 8f258af164bb4bf65fc67b88df4abd8f 600 Pfam PF01368 DHH family 101 227 1.7E-9 T 12-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_CH01941 8f258af164bb4bf65fc67b88df4abd8f 600 Gene3D G3DSA:3.90.1640.30 76 347 7.3E-83 T 12-10-2018 AMJ96_CH01941 8f258af164bb4bf65fc67b88df4abd8f 600 Gene3D G3DSA:3.10.310.30 348 476 1.6E-27 T 12-10-2018 AMJ96_CH01941 8f258af164bb4bf65fc67b88df4abd8f 600 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 46 594 1.7E-160 T 12-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 AMJ96_CH02323 7740d4525cdfcfb9df855bc624737aee 157 Pfam PF00578 AhpC/TSA family 6 133 2.4E-35 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMJ96_CH02323 7740d4525cdfcfb9df855bc624737aee 157 PIRSF PIRSF000239 1 157 1.6E-18 T 12-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMJ96_CH02323 7740d4525cdfcfb9df855bc624737aee 157 Gene3D G3DSA:3.40.30.10 5 155 1.0E-45 T 12-10-2018 AMJ96_CH02323 7740d4525cdfcfb9df855bc624737aee 157 SUPERFAMILY SSF52833 6 155 6.35E-47 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH04037 8f4d5c392836badc1b4a8e8db5f786ce 293 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 185 210 - T 12-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMJ96_CH04037 8f4d5c392836badc1b4a8e8db5f786ce 293 PIRSF PIRSF000105 1 292 1.4E-80 T 12-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 AMJ96_CH04037 8f4d5c392836badc1b4a8e8db5f786ce 293 SUPERFAMILY SSF48179 187 286 3.15E-34 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_CH04037 8f4d5c392836badc1b4a8e8db5f786ce 293 Gene3D G3DSA:1.10.1040.50 192 293 5.8E-35 T 12-10-2018 AMJ96_CH04037 8f4d5c392836badc1b4a8e8db5f786ce 293 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 189 284 8.0E-34 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMJ96_CH04037 8f4d5c392836badc1b4a8e8db5f786ce 293 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 7 185 4.4E-61 T 12-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMJ96_CH04037 8f4d5c392836badc1b4a8e8db5f786ce 293 Gene3D G3DSA:3.40.50.720 4 191 8.1E-66 T 12-10-2018 AMJ96_CH04037 8f4d5c392836badc1b4a8e8db5f786ce 293 SUPERFAMILY SSF51735 5 187 1.47E-56 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00406 0c0d39a41b309271912473faa9c07334 673 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 280 648 1.6E-89 T 12-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 AMJ96_PC00406 0c0d39a41b309271912473faa9c07334 673 PRINTS PR00738 Glycosyl hydrolase family 20 signature 612 628 6.9E-43 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AMJ96_PC00406 0c0d39a41b309271912473faa9c07334 673 PRINTS PR00738 Glycosyl hydrolase family 20 signature 301 322 6.9E-43 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AMJ96_PC00406 0c0d39a41b309271912473faa9c07334 673 PRINTS PR00738 Glycosyl hydrolase family 20 signature 630 647 6.9E-43 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AMJ96_PC00406 0c0d39a41b309271912473faa9c07334 673 PRINTS PR00738 Glycosyl hydrolase family 20 signature 233 253 6.9E-43 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AMJ96_PC00406 0c0d39a41b309271912473faa9c07334 673 PRINTS PR00738 Glycosyl hydrolase family 20 signature 371 388 6.9E-43 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AMJ96_PC00406 0c0d39a41b309271912473faa9c07334 673 PRINTS PR00738 Glycosyl hydrolase family 20 signature 419 437 6.9E-43 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AMJ96_PC00406 0c0d39a41b309271912473faa9c07334 673 PRINTS PR00738 Glycosyl hydrolase family 20 signature 272 289 6.9E-43 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AMJ96_PC00406 0c0d39a41b309271912473faa9c07334 673 PRINTS PR00738 Glycosyl hydrolase family 20 signature 441 454 6.9E-43 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AMJ96_PC00406 0c0d39a41b309271912473faa9c07334 673 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 150 274 7.3E-13 T 12-10-2018 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal AMJ96_PC00406 0c0d39a41b309271912473faa9c07334 673 SUPERFAMILY SSF55545 143 276 1.57E-12 T 12-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 AMJ96_PC00406 0c0d39a41b309271912473faa9c07334 673 Gene3D G3DSA:3.30.379.10 145 276 3.6E-11 T 12-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 AMJ96_PC00406 0c0d39a41b309271912473faa9c07334 673 SUPERFAMILY SSF51445 279 658 2.78E-102 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_PC00406 0c0d39a41b309271912473faa9c07334 673 Gene3D G3DSA:3.20.20.80 277 666 2.8E-109 T 12-10-2018 AMJ96_CH00488 bf98af6b1cc0acd4a698154cba33f50c 210 SUPERFAMILY SSF52540 20 203 4.98E-35 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00488 bf98af6b1cc0acd4a698154cba33f50c 210 Gene3D G3DSA:3.40.50.300 4 208 2.0E-54 T 12-10-2018 AMJ96_CH00488 bf98af6b1cc0acd4a698154cba33f50c 210 Pfam PF03308 ArgK protein 8 58 3.9E-7 T 12-10-2018 AMJ96_CH01537 4d4e6c22bee6657cb126ac6b5a76a76e 452 Pfam PF13449 Esterase-like activity of phytase 90 423 3.7E-61 T 12-10-2018 IPR027372 Phytase-like domain AMJ96_CH03213 0be53cd0b684f4281a4e4ba8bbc63750 937 Pfam PF13709 Domain of unknown function (DUF4159) 700 917 2.1E-59 T 12-10-2018 IPR025297 Domain of unknown function DUF4159 AMJ96_CH03213 0be53cd0b684f4281a4e4ba8bbc63750 937 TIGRFAM TIGR02226 two_anch: N-terminal double-transmembrane domain 7 85 2.6E-23 T 12-10-2018 IPR011933 Double transmembrane domain AMJ96_CH03213 0be53cd0b684f4281a4e4ba8bbc63750 937 Gene3D G3DSA:3.40.50.12140 695 919 1.1E-74 T 12-10-2018 AMJ96_CH03213 0be53cd0b684f4281a4e4ba8bbc63750 937 SUPERFAMILY SSF52317 312 521 1.3E-6 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH03213 0be53cd0b684f4281a4e4ba8bbc63750 937 Pfam PF07584 Aerotolerance regulator N-terminal 6 80 1.7E-16 T 12-10-2018 IPR024163 Aerotolerance regulator, N-terminal AMJ96_CH00294 300a31e45bd3015362f8200ebaa190a2 227 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 84 1.4E-21 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMJ96_CH00294 300a31e45bd3015362f8200ebaa190a2 227 Gene3D G3DSA:3.40.30.10 1 88 3.3E-31 T 12-10-2018 AMJ96_CH00294 300a31e45bd3015362f8200ebaa190a2 227 Gene3D G3DSA:1.20.1050.10 89 212 1.2E-26 T 12-10-2018 AMJ96_CH00294 300a31e45bd3015362f8200ebaa190a2 227 Pfam PF13410 Glutathione S-transferase, C-terminal domain 123 188 1.9E-9 T 12-10-2018 AMJ96_CH00294 300a31e45bd3015362f8200ebaa190a2 227 SUPERFAMILY SSF52833 3 107 1.47E-28 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH00294 300a31e45bd3015362f8200ebaa190a2 227 SUPERFAMILY SSF47616 79 213 1.85E-29 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMJ96_CH03459 8eff2fcd27685845260fa3e535f40ebd 113 Gene3D G3DSA:1.10.3730.20 5 113 2.4E-37 T 12-10-2018 AMJ96_CH03459 8eff2fcd27685845260fa3e535f40ebd 113 Pfam PF00893 Small Multidrug Resistance protein 7 97 3.4E-28 T 12-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AMJ96_CH03459 8eff2fcd27685845260fa3e535f40ebd 113 SUPERFAMILY SSF103481 10 109 5.62E-20 T 12-10-2018 AMJ96_PD00628 df994402752fa3694841b3611475b072 584 SUPERFAMILY SSF63380 336 431 7.53E-10 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMJ96_PD00628 df994402752fa3694841b3611475b072 584 SUPERFAMILY SSF52343 459 583 1.44E-18 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMJ96_PD00628 df994402752fa3694841b3611475b072 584 Gene3D G3DSA:2.30.110.10 176 304 1.2E-9 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMJ96_PD00628 df994402752fa3694841b3611475b072 584 Gene3D G3DSA:3.40.50.80 459 584 5.3E-17 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain AMJ96_PD00628 df994402752fa3694841b3611475b072 584 Pfam PF00175 Oxidoreductase NAD-binding domain 464 565 9.0E-6 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AMJ96_PD00628 df994402752fa3694841b3611475b072 584 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 178 277 2.8E-5 T 12-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMJ96_PD00628 df994402752fa3694841b3611475b072 584 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 421 430 2.2E-5 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMJ96_PD00628 df994402752fa3694841b3611475b072 584 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 488 497 2.2E-5 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMJ96_PD00628 df994402752fa3694841b3611475b072 584 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 462 481 2.2E-5 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMJ96_PD00628 df994402752fa3694841b3611475b072 584 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 551 559 2.2E-5 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AMJ96_PD00628 df994402752fa3694841b3611475b072 584 Gene3D G3DSA:2.40.30.10 331 442 2.8E-6 T 12-10-2018 AMJ96_PD00628 df994402752fa3694841b3611475b072 584 SUPERFAMILY SSF50475 176 280 4.53E-6 T 12-10-2018 AMJ96_CH01244 2c6ef29e23173ccb22470d212cfc1fcf 217 SUPERFAMILY SSF53335 12 202 4.45E-36 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH01244 2c6ef29e23173ccb22470d212cfc1fcf 217 Gene3D G3DSA:3.40.50.150 2 202 2.6E-33 T 12-10-2018 AMJ96_CH01244 2c6ef29e23173ccb22470d212cfc1fcf 217 Pfam PF08241 Methyltransferase domain 49 144 9.8E-24 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMJ96_CH03727 a22570f41bceced675d5f09b72693d34 703 Gene3D G3DSA:3.30.70.100 582 667 3.7E-19 T 12-10-2018 AMJ96_CH03727 a22570f41bceced675d5f09b72693d34 703 Pfam PF00924 Mechanosensitive ion channel 469 669 2.8E-44 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMJ96_CH03727 a22570f41bceced675d5f09b72693d34 703 SUPERFAMILY SSF82689 576 676 2.35E-15 T 12-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AMJ96_CH03727 a22570f41bceced675d5f09b72693d34 703 Gene3D G3DSA:2.30.30.60 527 576 1.3E-10 T 12-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily AMJ96_CH03727 a22570f41bceced675d5f09b72693d34 703 SUPERFAMILY SSF50182 512 573 4.9E-10 T 12-10-2018 IPR010920 LSM domain superfamily AMJ96_CH03727 a22570f41bceced675d5f09b72693d34 703 SUPERFAMILY SSF82861 456 510 6.41E-12 T 12-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AMJ96_CH02591 ae8ac6de30b80187b603830db24e494c 365 SUPERFAMILY SSF52540 4 244 3.95E-80 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02591 ae8ac6de30b80187b603830db24e494c 365 Gene3D G3DSA:3.40.50.300 3 221 2.0E-61 T 12-10-2018 AMJ96_CH02591 ae8ac6de30b80187b603830db24e494c 365 Pfam PF00005 ABC transporter 20 161 1.5E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02591 ae8ac6de30b80187b603830db24e494c 365 Pfam PF08402 TOBE domain 278 346 7.6E-11 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_CH02591 ae8ac6de30b80187b603830db24e494c 365 SUPERFAMILY SSF50331 236 353 1.43E-22 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH02591 ae8ac6de30b80187b603830db24e494c 365 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02591 ae8ac6de30b80187b603830db24e494c 365 Gene3D G3DSA:2.40.50.140 285 338 3.4E-25 T 12-10-2018 AMJ96_CH02591 ae8ac6de30b80187b603830db24e494c 365 Gene3D G3DSA:2.40.50.940 222 347 3.4E-25 T 12-10-2018 AMJ96_CH02591 ae8ac6de30b80187b603830db24e494c 365 SMART SM00382 28 211 6.4E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04264 532544492e1212a5c1ec3583d085d3a2 215 SUPERFAMILY SSF47616 86 203 1.6E-14 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMJ96_CH04264 532544492e1212a5c1ec3583d085d3a2 215 SUPERFAMILY SSF52833 3 88 2.33E-20 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH04264 532544492e1212a5c1ec3583d085d3a2 215 Pfam PF13410 Glutathione S-transferase, C-terminal domain 143 199 1.9E-6 T 12-10-2018 AMJ96_CH04264 532544492e1212a5c1ec3583d085d3a2 215 Pfam PF13417 Glutathione S-transferase, N-terminal domain 12 82 5.2E-14 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMJ96_CH04264 532544492e1212a5c1ec3583d085d3a2 215 Gene3D G3DSA:3.40.30.10 3 85 1.6E-17 T 12-10-2018 AMJ96_CH04264 532544492e1212a5c1ec3583d085d3a2 215 Gene3D G3DSA:1.20.1050.10 86 191 6.9E-35 T 12-10-2018 AMJ96_PB00015 ec6a1dde02db3cfe4718b207f6ed7c6e 377 Gene3D G3DSA:3.40.1190.20 108 249 2.6E-17 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_PB00015 ec6a1dde02db3cfe4718b207f6ed7c6e 377 Pfam PF00294 pfkB family carbohydrate kinase 144 240 2.9E-10 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB AMJ96_PB00015 ec6a1dde02db3cfe4718b207f6ed7c6e 377 SUPERFAMILY SSF53613 22 243 9.35E-18 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_CH00070 18d10b8f6ed9ce8b98c046771c333823 340 SUPERFAMILY SSF51735 24 329 2.06E-81 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00070 18d10b8f6ed9ce8b98c046771c333823 340 Gene3D G3DSA:3.90.25.10 204 327 7.3E-99 T 12-10-2018 AMJ96_CH00070 18d10b8f6ed9ce8b98c046771c333823 340 Pfam PF16363 GDP-mannose 4,6 dehydratase 26 322 2.2E-47 T 12-10-2018 IPR016040 NAD(P)-binding domain AMJ96_CH00070 18d10b8f6ed9ce8b98c046771c333823 340 Gene3D G3DSA:3.40.50.720 25 314 7.3E-99 T 12-10-2018 AMJ96_PA00251 421effa2726df11465b62af3f0b0b3ef 252 Gene3D G3DSA:1.10.3720.10 18 230 6.9E-48 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00251 421effa2726df11465b62af3f0b0b3ef 252 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 28 120 1.6E-22 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_PA00251 421effa2726df11465b62af3f0b0b3ef 252 SUPERFAMILY SSF161098 25 212 1.7E-38 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00251 421effa2726df11465b62af3f0b0b3ef 252 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 45 227 2.1E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00085 8eee69b9b98990f6780ef63d65bc1ce0 278 SUPERFAMILY SSF51905 19 272 3.74E-26 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00085 8eee69b9b98990f6780ef63d65bc1ce0 278 Gene3D G3DSA:3.30.9.10 139 194 7.5E-30 T 12-10-2018 AMJ96_PD00085 8eee69b9b98990f6780ef63d65bc1ce0 278 Gene3D G3DSA:3.50.50.60 43 258 7.5E-30 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00085 8eee69b9b98990f6780ef63d65bc1ce0 278 Pfam PF01266 FAD dependent oxidoreductase 43 258 3.9E-24 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_CH02377 dc9fe273f944f4359314e5ae54a5d9b3 266 TIGRFAM TIGR00067 glut_race: glutamate racemase 11 233 5.6E-48 T 12-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMJ96_CH02377 dc9fe273f944f4359314e5ae54a5d9b3 266 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 190 200 - T 12-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMJ96_CH02377 dc9fe273f944f4359314e5ae54a5d9b3 266 SUPERFAMILY SSF53681 10 113 2.16E-24 T 12-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMJ96_CH02377 dc9fe273f944f4359314e5ae54a5d9b3 266 SUPERFAMILY SSF53681 116 263 6.32E-29 T 12-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMJ96_CH02377 dc9fe273f944f4359314e5ae54a5d9b3 266 Gene3D G3DSA:3.40.50.1860 13 237 1.5E-69 T 12-10-2018 AMJ96_CH02377 dc9fe273f944f4359314e5ae54a5d9b3 266 Hamap MF_00258 Glutamate racemase [murI]. 9 265 30.072 T 12-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMJ96_CH02377 dc9fe273f944f4359314e5ae54a5d9b3 266 Pfam PF01177 Asp/Glu/Hydantoin racemase 13 225 2.7E-15 T 12-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMJ96_CH02377 dc9fe273f944f4359314e5ae54a5d9b3 266 Gene3D G3DSA:3.40.50.1860 102 217 1.5E-69 T 12-10-2018 AMJ96_CH04341 b947ad561c4b595f15fe9488e368b9b3 145 SUPERFAMILY SSF55486 14 136 1.71E-35 T 12-10-2018 AMJ96_CH04341 b947ad561c4b595f15fe9488e368b9b3 145 Pfam PF06262 Zincin-like metallopeptidase 41 136 6.7E-34 T 12-10-2018 IPR010428 Zincin-like metallopeptidase AMJ96_CH04341 b947ad561c4b595f15fe9488e368b9b3 145 Gene3D G3DSA:3.30.2010.20 16 136 7.6E-32 T 12-10-2018 IPR038555 Zincin-like metallopeptidase superfamily AMJ96_CH03627 74bca136e309f8a86b5f47fea677c032 421 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 6 413 2.2E-197 T 12-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03627 74bca136e309f8a86b5f47fea677c032 421 SUPERFAMILY SSF142019 5 237 3.14E-91 T 12-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03627 74bca136e309f8a86b5f47fea677c032 421 SUPERFAMILY SSF142984 239 322 1.03E-24 T 12-10-2018 AMJ96_CH03627 74bca136e309f8a86b5f47fea677c032 421 Gene3D G3DSA:3.40.50.11540 51 228 1.2E-85 T 12-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03627 74bca136e309f8a86b5f47fea677c032 421 SMART SM00928 327 372 1.8E-23 T 12-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03627 74bca136e309f8a86b5f47fea677c032 421 Gene3D G3DSA:1.20.1440.230 325 420 1.6E-31 T 12-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03627 74bca136e309f8a86b5f47fea677c032 421 SUPERFAMILY SSF140490 323 421 2.09E-34 T 12-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03627 74bca136e309f8a86b5f47fea677c032 421 Pfam PF10531 SLBB domain 241 290 4.7E-12 T 12-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03627 74bca136e309f8a86b5f47fea677c032 421 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 165 180 - T 12-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03627 74bca136e309f8a86b5f47fea677c032 421 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 340 351 - T 12-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03627 74bca136e309f8a86b5f47fea677c032 421 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 46 217 1.5E-51 T 12-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03627 74bca136e309f8a86b5f47fea677c032 421 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 329 412 4.8E-29 T 12-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03627 74bca136e309f8a86b5f47fea677c032 421 Gene3D G3DSA:3.10.20.600 230 324 1.2E-36 T 12-10-2018 AMJ96_PC00405 538b54b0a19e552c8e30f474e1523052 246 Gene3D G3DSA:1.10.10.60 204 246 6.8E-15 T 12-10-2018 AMJ96_PC00405 538b54b0a19e552c8e30f474e1523052 246 SUPERFAMILY SSF46689 148 194 5.82E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PC00405 538b54b0a19e552c8e30f474e1523052 246 SUPERFAMILY SSF46689 197 245 5.38E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PC00405 538b54b0a19e552c8e30f474e1523052 246 Gene3D G3DSA:1.10.10.60 145 203 4.5E-15 T 12-10-2018 AMJ96_PC00405 538b54b0a19e552c8e30f474e1523052 246 Pfam PF12833 Helix-turn-helix domain 168 245 3.8E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PC00405 538b54b0a19e552c8e30f474e1523052 246 SMART SM00342 161 243 3.9E-27 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH02381 0df41ebda10c9017fa81102f888b7cad 403 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 269 288 - T 12-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 AMJ96_CH02381 0df41ebda10c9017fa81102f888b7cad 403 Gene3D G3DSA:3.40.718.10 1 403 8.2E-219 T 12-10-2018 AMJ96_CH02381 0df41ebda10c9017fa81102f888b7cad 403 SMART SM01329 9 394 6.6E-135 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AMJ96_CH02381 0df41ebda10c9017fa81102f888b7cad 403 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 394 1.6E-76 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AMJ96_CH02381 0df41ebda10c9017fa81102f888b7cad 403 TIGRFAM TIGR00127 nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 2 402 4.0E-215 T 12-10-2018 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 AMJ96_CH02381 0df41ebda10c9017fa81102f888b7cad 403 PIRSF PIRSF000108 1 403 1.2E-226 T 12-10-2018 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 AMJ96_CH02381 0df41ebda10c9017fa81102f888b7cad 403 SUPERFAMILY SSF53659 1 402 2.69E-153 T 12-10-2018 AMJ96_CH01451 fdbadc357c21a43d817a76324a5ee73c 138 TIGRFAM TIGR02301 TIGR02301: TIGR02301 family protein 33 136 2.5E-44 T 12-10-2018 IPR012645 Conserved hypothetical protein CHP02301 AMJ96_CH01451 fdbadc357c21a43d817a76324a5ee73c 138 Pfam PF09539 Protein of unknown function (DUF2385) 40 136 3.1E-37 T 12-10-2018 IPR012645 Conserved hypothetical protein CHP02301 AMJ96_CH03705 b3234f2f133a87272b2b92e847ba825e 151 SUPERFAMILY SSF54637 17 144 5.15E-35 T 12-10-2018 IPR029069 HotDog domain superfamily AMJ96_CH03705 b3234f2f133a87272b2b92e847ba825e 151 Gene3D G3DSA:3.10.129.10 15 144 1.2E-35 T 12-10-2018 AMJ96_CH03705 b3234f2f133a87272b2b92e847ba825e 151 PIRSF PIRSF003230 9 150 9.3E-43 T 12-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AMJ96_CH03705 b3234f2f133a87272b2b92e847ba825e 151 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 17 142 9.4E-49 T 12-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 AMJ96_CH03705 b3234f2f133a87272b2b92e847ba825e 151 Pfam PF03061 Thioesterase superfamily 32 118 3.4E-17 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMJ96_CH03705 b3234f2f133a87272b2b92e847ba825e 151 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 22 130 4.6E-29 T 12-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AMJ96_CH00881 0ddea6cc4a23f18c75b9b7bdfbe19cc7 324 Pfam PF01544 CorA-like Mg2+ transporter protein 25 319 1.5E-50 T 12-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 AMJ96_CH00881 0ddea6cc4a23f18c75b9b7bdfbe19cc7 324 Gene3D G3DSA:1.20.58.340 248 324 1.4E-25 T 12-10-2018 AMJ96_CH00881 0ddea6cc4a23f18c75b9b7bdfbe19cc7 324 SUPERFAMILY SSF144083 259 322 1.44E-19 T 12-10-2018 AMJ96_CH00881 0ddea6cc4a23f18c75b9b7bdfbe19cc7 324 SUPERFAMILY SSF143865 2 263 3.01E-36 T 12-10-2018 AMJ96_CH00881 0ddea6cc4a23f18c75b9b7bdfbe19cc7 324 Gene3D G3DSA:3.30.460.20 4 123 4.5E-7 T 12-10-2018 AMJ96_CH02447 bdf7acef6f82bebcccae4253d44c6d88 203 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 30 122 2.2E-14 T 12-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMJ96_CH02447 bdf7acef6f82bebcccae4253d44c6d88 203 Gene3D G3DSA:2.30.110.10 20 148 2.1E-23 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMJ96_CH02447 bdf7acef6f82bebcccae4253d44c6d88 203 TIGRFAM TIGR04025 PPOX_FMN_DR2398: pyridoxamine 5'-phosphate oxidase, FMN-binding family 8 203 9.5E-78 T 12-10-2018 IPR024029 Pyridoxamine 5-phosphate oxidase, FMN-dependent AMJ96_CH02447 bdf7acef6f82bebcccae4253d44c6d88 203 SUPERFAMILY SSF50475 29 190 8.95E-24 T 12-10-2018 AMJ96_CH00885 e23c144b2ab557148fd1c5ea01544a03 250 Gene3D G3DSA:1.20.120.220 79 247 9.1E-34 T 12-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH00885 e23c144b2ab557148fd1c5ea01544a03 250 PRINTS PR00123 ATP synthase A subunit signature 228 243 9.6E-31 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH00885 e23c144b2ab557148fd1c5ea01544a03 250 PRINTS PR00123 ATP synthase A subunit signature 87 103 9.6E-31 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH00885 e23c144b2ab557148fd1c5ea01544a03 250 PRINTS PR00123 ATP synthase A subunit signature 168 190 9.6E-31 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH00885 e23c144b2ab557148fd1c5ea01544a03 250 PRINTS PR00123 ATP synthase A subunit signature 148 163 9.6E-31 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH00885 e23c144b2ab557148fd1c5ea01544a03 250 Hamap MF_01393 ATP synthase subunit a [atpB]. 11 248 15.506 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH00885 e23c144b2ab557148fd1c5ea01544a03 250 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 6 245 3.9E-68 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH00885 e23c144b2ab557148fd1c5ea01544a03 250 SUPERFAMILY SSF81336 79 242 4.45E-46 T 12-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH00885 e23c144b2ab557148fd1c5ea01544a03 250 ProSitePatterns PS00449 ATP synthase a subunit signature. 171 180 - T 12-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH00885 e23c144b2ab557148fd1c5ea01544a03 250 Pfam PF00119 ATP synthase A chain 31 241 2.7E-56 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 Gene3D G3DSA:3.40.50.670 695 809 5.1E-23 T 12-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 SUPERFAMILY SSF56719 406 802 9.94E-86 T 12-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 Gene3D G3DSA:3.40.50.670 410 609 2.2E-73 T 12-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 PRINTS PR00418 DNA topoisomerase II family signature 432 446 7.0E-71 T 12-10-2018 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 PRINTS PR00418 DNA topoisomerase II family signature 45 60 7.0E-71 T 12-10-2018 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 PRINTS PR00418 DNA topoisomerase II family signature 537 549 7.0E-71 T 12-10-2018 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 PRINTS PR00418 DNA topoisomerase II family signature 80 93 7.0E-71 T 12-10-2018 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 PRINTS PR00418 DNA topoisomerase II family signature 517 534 7.0E-71 T 12-10-2018 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 PRINTS PR00418 DNA topoisomerase II family signature 123 137 7.0E-71 T 12-10-2018 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 PRINTS PR00418 DNA topoisomerase II family signature 743 759 7.0E-71 T 12-10-2018 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 PRINTS PR00418 DNA topoisomerase II family signature 280 293 7.0E-71 T 12-10-2018 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 PRINTS PR00418 DNA topoisomerase II family signature 499 515 7.0E-71 T 12-10-2018 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 ProSitePatterns PS00177 DNA topoisomerase II signature. 434 442 - T 12-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 739 800 1.7E-27 T 12-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 SUPERFAMILY SSF55874 15 222 7.6E-71 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 42 181 5.1E-20 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 SMART SM00433 45 623 1.3E-261 T 12-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 Gene3D G3DSA:3.30.565.10 11 232 2.5E-88 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 PRINTS PR01159 DNA gyrase subunit B signature 386 406 7.6E-69 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 PRINTS PR01159 DNA gyrase subunit B signature 482 491 7.6E-69 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 PRINTS PR01159 DNA gyrase subunit B signature 206 219 7.6E-69 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 PRINTS PR01159 DNA gyrase subunit B signature 780 796 7.6E-69 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 PRINTS PR01159 DNA gyrase subunit B signature 15 25 7.6E-69 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 PRINTS PR01159 DNA gyrase subunit B signature 254 272 7.6E-69 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 PRINTS PR01159 DNA gyrase subunit B signature 372 386 7.6E-69 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 PRINTS PR01159 DNA gyrase subunit B signature 324 340 7.6E-69 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 PRINTS PR01159 DNA gyrase subunit B signature 764 776 7.6E-69 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 PRINTS PR01159 DNA gyrase subunit B signature 191 206 7.6E-69 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 SMART SM00387 41 186 6.3E-25 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 Pfam PF00204 DNA gyrase B 233 402 2.9E-57 T 12-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 15 811 5.5E-302 T 12-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 12 811 101.624 T 12-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 Pfam PF01751 Toprim domain 431 543 1.1E-17 T 12-10-2018 IPR006171 TOPRIM domain AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 Gene3D G3DSA:3.30.230.10 233 404 2.4E-69 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMJ96_CH00012 39d619bd67909c72752e9ba75808fa2f 811 SUPERFAMILY SSF54211 233 403 1.9E-58 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_PA00292 87f94beb3498d2271aab65694c627ec0 437 Gene3D G3DSA:3.40.190.10 42 394 1.0E-145 T 12-10-2018 AMJ96_PA00292 87f94beb3498d2271aab65694c627ec0 437 Gene3D G3DSA:3.40.190.10 138 423 1.0E-145 T 12-10-2018 AMJ96_PA00292 87f94beb3498d2271aab65694c627ec0 437 Pfam PF01547 Bacterial extracellular solute-binding protein 40 327 5.8E-50 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PA00292 87f94beb3498d2271aab65694c627ec0 437 SUPERFAMILY SSF53850 22 433 4.06E-77 T 12-10-2018 AMJ96_CH02313 d79d456f862866b82eb321e0d2b699ad 113 SUPERFAMILY SSF82771 3 89 5.1E-19 T 12-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 AMJ96_CH02313 d79d456f862866b82eb321e0d2b699ad 113 Pfam PF01541 GIY-YIG catalytic domain 3 74 5.5E-11 T 12-10-2018 IPR000305 GIY-YIG endonuclease AMJ96_CH02313 d79d456f862866b82eb321e0d2b699ad 113 Gene3D G3DSA:3.40.1440.10 1 103 5.5E-16 T 12-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 AMJ96_CH03319 739be6cb9a81a9a4d8e9dfbdd54a33f0 331 PIRSF PIRSF033905 1 331 2.2E-175 T 12-10-2018 IPR009645 Uncharacterised conserved protein GguC AMJ96_CH03319 739be6cb9a81a9a4d8e9dfbdd54a33f0 331 SUPERFAMILY SSF56529 117 318 7.87E-16 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMJ96_CH03319 739be6cb9a81a9a4d8e9dfbdd54a33f0 331 Gene3D G3DSA:3.90.850.10 100 323 1.3E-6 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMJ96_CH02110 ae854ceec08fce89bcb6dbad48a119ae 268 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 26 264 1.3E-60 T 12-10-2018 AMJ96_CH02110 ae854ceec08fce89bcb6dbad48a119ae 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 189 206 3.1E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02110 ae854ceec08fce89bcb6dbad48a119ae 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 21 38 3.1E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02110 ae854ceec08fce89bcb6dbad48a119ae 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 158 3.1E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02110 ae854ceec08fce89bcb6dbad48a119ae 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 228 248 3.1E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02110 ae854ceec08fce89bcb6dbad48a119ae 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 187 3.1E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02110 ae854ceec08fce89bcb6dbad48a119ae 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 95 106 3.1E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02110 ae854ceec08fce89bcb6dbad48a119ae 268 Gene3D G3DSA:3.40.50.720 2 267 6.9E-77 T 12-10-2018 AMJ96_CH02110 ae854ceec08fce89bcb6dbad48a119ae 268 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 155 183 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH02110 ae854ceec08fce89bcb6dbad48a119ae 268 SUPERFAMILY SSF51735 15 266 5.41E-74 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03434 e7bb7e1f07363379aa4b24d76f425f4e 758 Pfam PF02706 Chain length determinant protein 23 114 1.4E-13 T 12-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 AMJ96_CH03434 e7bb7e1f07363379aa4b24d76f425f4e 758 Pfam PF13807 G-rich domain on putative tyrosine kinase 394 473 1.8E-11 T 12-10-2018 IPR032807 Tyrosine kinase, G-rich domain AMJ96_CH03434 e7bb7e1f07363379aa4b24d76f425f4e 758 TIGRFAM TIGR01005 eps_transp_fam: exopolysaccharide transport protein family 23 758 1.5E-147 T 12-10-2018 IPR005700 Exopolysaccharide biosynthesis protein ExoP-like GO:0045226 AMJ96_CH03434 e7bb7e1f07363379aa4b24d76f425f4e 758 SUPERFAMILY SSF52540 556 745 7.43E-31 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03434 e7bb7e1f07363379aa4b24d76f425f4e 758 Pfam PF13614 AAA domain 556 687 2.0E-12 T 12-10-2018 IPR025669 AAA domain AMJ96_CH03434 e7bb7e1f07363379aa4b24d76f425f4e 758 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 545 741 3.2E-33 T 12-10-2018 IPR005702 Exopolysaccharide synthesis protein GO:0045226 AMJ96_CH03434 e7bb7e1f07363379aa4b24d76f425f4e 758 Gene3D G3DSA:3.40.50.300 469 757 5.6E-59 T 12-10-2018 AMJ96_CH02728 38de3c115860bc7baf875ce1efee1e70 278 Gene3D G3DSA:3.40.50.1820 1 277 7.6E-87 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02728 38de3c115860bc7baf875ce1efee1e70 278 Pfam PF00561 alpha/beta hydrolase fold 24 258 4.7E-22 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH02728 38de3c115860bc7baf875ce1efee1e70 278 SUPERFAMILY SSF53474 4 276 8.45E-65 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02728 38de3c115860bc7baf875ce1efee1e70 278 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 5.8E-11 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH02728 38de3c115860bc7baf875ce1efee1e70 278 PRINTS PR00111 Alpha/beta hydrolase fold signature 49 64 5.8E-11 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH02728 38de3c115860bc7baf875ce1efee1e70 278 PRINTS PR00111 Alpha/beta hydrolase fold signature 221 235 5.8E-11 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH00705 611f5bd55b6b5c6843108a0e7183599b 238 PRINTS PR01008 Flagellar L-ring protein signature 80 92 1.1E-32 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMJ96_CH00705 611f5bd55b6b5c6843108a0e7183599b 238 PRINTS PR01008 Flagellar L-ring protein signature 152 167 1.1E-32 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMJ96_CH00705 611f5bd55b6b5c6843108a0e7183599b 238 PRINTS PR01008 Flagellar L-ring protein signature 199 213 1.1E-32 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMJ96_CH00705 611f5bd55b6b5c6843108a0e7183599b 238 PRINTS PR01008 Flagellar L-ring protein signature 215 229 1.1E-32 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMJ96_CH00705 611f5bd55b6b5c6843108a0e7183599b 238 PRINTS PR01008 Flagellar L-ring protein signature 178 194 1.1E-32 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMJ96_CH00705 611f5bd55b6b5c6843108a0e7183599b 238 Pfam PF02107 Flagellar L-ring protein 60 237 2.9E-54 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMJ96_CH00705 611f5bd55b6b5c6843108a0e7183599b 238 Hamap MF_00415 Flagellar L-ring protein [flgH]. 3 236 25.173 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AMJ96_CH03794 1d47675d0cac8981f543726bb72c7780 618 Pfam PF08439 Oligopeptidase F 138 206 4.6E-17 T 12-10-2018 IPR013647 Oligopeptidase F, N-terminal domain AMJ96_CH03794 1d47675d0cac8981f543726bb72c7780 618 SUPERFAMILY SSF55486 28 599 1.83E-115 T 12-10-2018 AMJ96_CH03794 1d47675d0cac8981f543726bb72c7780 618 Pfam PF01432 Peptidase family M3 222 602 1.8E-40 T 12-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 AMJ96_CH03794 1d47675d0cac8981f543726bb72c7780 618 Gene3D G3DSA:1.10.1370.30 48 617 1.3E-137 T 12-10-2018 AMJ96_CH03794 1d47675d0cac8981f543726bb72c7780 618 TIGRFAM TIGR02290 M3_fam_3: oligoendopeptidase, pepF/M3 family 32 615 2.1E-216 T 12-10-2018 IPR011977 Peptidase M3B, oligoendopeptidase-related clade 3 AMJ96_PC00035 9e000de4222246a2b3a2c37aac4e5feb 155 Pfam PF00027 Cyclic nucleotide-binding domain 34 118 1.3E-18 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_PC00035 9e000de4222246a2b3a2c37aac4e5feb 155 PRINTS PR00103 cAMP-dependent protein kinase signature 36 50 1.0E-7 T 12-10-2018 AMJ96_PC00035 9e000de4222246a2b3a2c37aac4e5feb 155 PRINTS PR00103 cAMP-dependent protein kinase signature 92 103 1.0E-7 T 12-10-2018 AMJ96_PC00035 9e000de4222246a2b3a2c37aac4e5feb 155 PRINTS PR00103 cAMP-dependent protein kinase signature 51 65 1.0E-7 T 12-10-2018 AMJ96_PC00035 9e000de4222246a2b3a2c37aac4e5feb 155 PRINTS PR00103 cAMP-dependent protein kinase signature 80 89 1.0E-7 T 12-10-2018 AMJ96_PC00035 9e000de4222246a2b3a2c37aac4e5feb 155 Gene3D G3DSA:2.60.120.10 6 147 1.1E-35 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PC00035 9e000de4222246a2b3a2c37aac4e5feb 155 SMART SM00100 15 132 7.3E-20 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_PC00035 9e000de4222246a2b3a2c37aac4e5feb 155 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 82 99 - T 12-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site AMJ96_PC00035 9e000de4222246a2b3a2c37aac4e5feb 155 SUPERFAMILY SSF51206 8 139 2.49E-32 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like AMJ96_CH03322 c3ce2d59807fa56ca5640cc4b139d343 354 SUPERFAMILY SSF53822 27 341 1.96E-69 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH03322 c3ce2d59807fa56ca5640cc4b139d343 354 Gene3D G3DSA:3.40.50.2300 30 328 1.8E-138 T 12-10-2018 AMJ96_CH03322 c3ce2d59807fa56ca5640cc4b139d343 354 Gene3D G3DSA:3.40.50.2300 132 348 1.8E-138 T 12-10-2018 AMJ96_CH03322 c3ce2d59807fa56ca5640cc4b139d343 354 Pfam PF13407 Periplasmic binding protein domain 30 307 6.6E-63 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_CH00024 1e6c6238920c6620b055546c3770ee71 431 SUPERFAMILY SSF53244 279 424 1.4E-21 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMJ96_CH00024 1e6c6238920c6620b055546c3770ee71 431 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 130 145 - T 12-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 AMJ96_CH00024 1e6c6238920c6620b055546c3770ee71 431 SUPERFAMILY SSF53623 3 279 3.55E-81 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMJ96_CH00024 1e6c6238920c6620b055546c3770ee71 431 Gene3D G3DSA:3.90.190.20 281 425 8.0E-16 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMJ96_CH00024 1e6c6238920c6620b055546c3770ee71 431 TIGRFAM TIGR01499 folC: bifunctional protein FolC 12 423 7.4E-98 T 12-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 AMJ96_CH00024 1e6c6238920c6620b055546c3770ee71 431 Pfam PF08245 Mur ligase middle domain 35 257 5.4E-8 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMJ96_CH00024 1e6c6238920c6620b055546c3770ee71 431 PIRSF PIRSF001563 2 428 6.8E-97 T 12-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 AMJ96_CH00024 1e6c6238920c6620b055546c3770ee71 431 Gene3D G3DSA:3.40.1190.10 1 280 3.0E-82 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMJ96_CH04008 c88766d077a4634ca37aba504b667987 137 ProSitePatterns PS00893 Nudix box signature. 43 64 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMJ96_CH04008 c88766d077a4634ca37aba504b667987 137 PRINTS PR00502 NUDIX hydrolase family signature 38 52 1.1E-9 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMJ96_CH04008 c88766d077a4634ca37aba504b667987 137 PRINTS PR00502 NUDIX hydrolase family signature 52 67 1.1E-9 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMJ96_CH04008 c88766d077a4634ca37aba504b667987 137 Pfam PF00293 NUDIX domain 11 131 1.3E-21 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMJ96_CH04008 c88766d077a4634ca37aba504b667987 137 SUPERFAMILY SSF55811 6 134 4.87E-41 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_CH04008 c88766d077a4634ca37aba504b667987 137 TIGRFAM TIGR00586 mutt: mutator mutT protein 7 134 1.3E-30 T 12-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 AMJ96_CH04008 c88766d077a4634ca37aba504b667987 137 Gene3D G3DSA:3.90.79.10 4 137 1.3E-42 T 12-10-2018 AMJ96_CH00498 dea43e8e01cb218e3c914958564e68d4 130 Gene3D G3DSA:2.30.30.240 9 102 6.9E-29 T 12-10-2018 AMJ96_CH00498 dea43e8e01cb218e3c914958564e68d4 130 Pfam PF05239 PRC-barrel domain 24 97 1.4E-14 T 12-10-2018 IPR027275 PRC-barrel domain AMJ96_CH00498 dea43e8e01cb218e3c914958564e68d4 130 SUPERFAMILY SSF50346 15 129 3.73E-30 T 12-10-2018 IPR011033 PRC-barrel-like superfamily AMJ96_CH01089 5c5954ac51b796fd3c8763371eaeaddb 234 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 83 103 - T 12-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMJ96_CH01089 5c5954ac51b796fd3c8763371eaeaddb 234 SMART SM00947 28 196 5.9E-66 T 12-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMJ96_CH01089 5c5954ac51b796fd3c8763371eaeaddb 234 Pfam PF00484 Carbonic anhydrase 35 192 3.3E-49 T 12-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMJ96_CH01089 5c5954ac51b796fd3c8763371eaeaddb 234 Gene3D G3DSA:3.40.1050.10 1 205 5.5E-69 T 12-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 AMJ96_CH01089 5c5954ac51b796fd3c8763371eaeaddb 234 SUPERFAMILY SSF53056 2 201 9.81E-63 T 12-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 AMJ96_CH01089 5c5954ac51b796fd3c8763371eaeaddb 234 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 40 47 - T 12-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AMJ96_CH01498 5ff1bd23e22fde1797e40d763b77911b 295 Pfam PF08340 Domain of unknown function (DUF1732) 212 295 6.3E-32 T 12-10-2018 IPR013551 Domain of unknown function DUF1732 AMJ96_CH01498 5ff1bd23e22fde1797e40d763b77911b 295 Pfam PF03755 YicC-like family, N-terminal region 3 158 5.5E-34 T 12-10-2018 IPR013527 YicC-like, N-terminal AMJ96_CH01498 5ff1bd23e22fde1797e40d763b77911b 295 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 3 295 2.4E-62 T 12-10-2018 IPR005229 Conserved hypothetical protein CHP00255 AMJ96_PD00223 c3ad7bb0b3fcf2978103b468525c3892 359 Pfam PF00005 ABC transporter 20 162 5.5E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00223 c3ad7bb0b3fcf2978103b468525c3892 359 SUPERFAMILY SSF50331 236 326 3.15E-7 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_PD00223 c3ad7bb0b3fcf2978103b468525c3892 359 Pfam PF08402 TOBE domain 270 326 1.5E-6 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_PD00223 c3ad7bb0b3fcf2978103b468525c3892 359 SMART SM00382 28 211 1.0E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00223 c3ad7bb0b3fcf2978103b468525c3892 359 Gene3D G3DSA:2.40.50.140 274 328 4.7E-10 T 12-10-2018 AMJ96_PD00223 c3ad7bb0b3fcf2978103b468525c3892 359 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00223 c3ad7bb0b3fcf2978103b468525c3892 359 SUPERFAMILY SSF52540 4 242 1.02E-83 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00223 c3ad7bb0b3fcf2978103b468525c3892 359 Gene3D G3DSA:2.40.50.940 222 273 4.7E-10 T 12-10-2018 AMJ96_PD00223 c3ad7bb0b3fcf2978103b468525c3892 359 Gene3D G3DSA:3.40.50.300 4 221 1.1E-63 T 12-10-2018 AMJ96_CH02917 8e034f34539a50e399587b36e42ab386 344 Gene3D G3DSA:2.40.50.940 260 336 1.8E-10 T 12-10-2018 AMJ96_CH02917 8e034f34539a50e399587b36e42ab386 344 Pfam PF08402 TOBE domain 261 333 6.6E-6 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_CH02917 8e034f34539a50e399587b36e42ab386 344 Gene3D G3DSA:2.40.50.140 268 327 1.8E-10 T 12-10-2018 AMJ96_CH02917 8e034f34539a50e399587b36e42ab386 344 Gene3D G3DSA:2.40.50.940 222 244 1.8E-9 T 12-10-2018 AMJ96_CH02917 8e034f34539a50e399587b36e42ab386 344 Pfam PF00005 ABC transporter 20 161 2.8E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02917 8e034f34539a50e399587b36e42ab386 344 SUPERFAMILY SSF52540 4 243 1.32E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02917 8e034f34539a50e399587b36e42ab386 344 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02917 8e034f34539a50e399587b36e42ab386 344 SMART SM00382 28 333 9.8E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02917 8e034f34539a50e399587b36e42ab386 344 Gene3D G3DSA:3.40.50.300 3 221 4.5E-65 T 12-10-2018 AMJ96_CH02917 8e034f34539a50e399587b36e42ab386 344 SUPERFAMILY SSF50331 236 342 2.11E-17 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH01458 c39b0b078de0fd48f2ffcd69897293cf 104 SMART SM00418 5 83 2.3E-20 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH01458 c39b0b078de0fd48f2ffcd69897293cf 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 69 4.4E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH01458 c39b0b078de0fd48f2ffcd69897293cf 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 39 54 4.4E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH01458 c39b0b078de0fd48f2ffcd69897293cf 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 7 22 4.4E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH01458 c39b0b078de0fd48f2ffcd69897293cf 104 Pfam PF12840 Helix-turn-helix domain 5 63 1.7E-14 T 12-10-2018 AMJ96_CH01458 c39b0b078de0fd48f2ffcd69897293cf 104 Gene3D G3DSA:1.10.10.10 3 104 4.6E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01458 c39b0b078de0fd48f2ffcd69897293cf 104 SUPERFAMILY SSF46785 5 95 1.34E-26 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01977 2b723f53899f598d5b4478022a963b21 524 Pfam PF13531 Bacterial extracellular solute-binding protein 34 296 1.3E-20 T 12-10-2018 AMJ96_CH01977 2b723f53899f598d5b4478022a963b21 524 SMART SM00327 343 519 3.9E-7 T 12-10-2018 IPR002035 von Willebrand factor, type A AMJ96_CH01977 2b723f53899f598d5b4478022a963b21 524 Gene3D G3DSA:3.40.50.410 346 521 9.9E-21 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMJ96_CH01977 2b723f53899f598d5b4478022a963b21 524 SUPERFAMILY SSF53850 34 318 1.27E-9 T 12-10-2018 AMJ96_CH01977 2b723f53899f598d5b4478022a963b21 524 Pfam PF13768 von Willebrand factor type A domain 349 502 2.9E-8 T 12-10-2018 IPR002035 von Willebrand factor, type A AMJ96_CH01977 2b723f53899f598d5b4478022a963b21 524 SUPERFAMILY SSF53300 347 507 1.36E-15 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Gene3D G3DSA:1.10.287.130 1392 1490 5.7E-24 T 12-10-2018 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SUPERFAMILY SSF55874 1481 1665 8.38E-43 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Pfam PF00512 His Kinase A (phospho-acceptor) domain 1425 1492 1.2E-15 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Pfam PF13185 GAF domain 1210 1346 1.9E-14 T 12-10-2018 IPR003018 GAF domain GO:0005515 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SMART SM00304 1134 1186 3.4E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SMART SM00304 582 634 4.5E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SMART SM00304 950 1002 1.9E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SMART SM00304 306 358 9.8E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SMART SM00304 1042 1094 4.0E-6 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SMART SM00304 858 910 5.7E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SMART SM00304 398 450 1.8E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SMART SM00304 674 726 2.0E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SMART SM00304 214 266 1.8E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SMART SM00304 490 542 8.1E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SMART SM00304 766 818 3.7E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SUPERFAMILY SSF58104 234 551 1.18E-20 T 12-10-2018 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SUPERFAMILY SSF58104 510 783 1.05E-17 T 12-10-2018 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SUPERFAMILY SSF52172 1980 2098 6.55E-38 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SMART SM00388 1424 1492 9.8E-20 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1539 1663 2.5E-28 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SUPERFAMILY SSF55781 1173 1346 1.11E-24 T 12-10-2018 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SMART SM00448 1979 2093 5.1E-38 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SMART SM00448 1711 1821 8.3E-17 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SMART SM00448 1833 1947 5.2E-18 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SMART SM00065 1210 1356 0.0015 T 12-10-2018 IPR003018 GAF domain GO:0005515 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Gene3D G3DSA:3.30.450.40 1196 1349 2.7E-13 T 12-10-2018 IPR029016 GAF-like domain superfamily AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Gene3D G3DSA:3.40.50.12740 1979 2099 2.6E-43 T 12-10-2018 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Gene3D G3DSA:3.40.50.12740 1834 1978 3.9E-23 T 12-10-2018 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Gene3D G3DSA:3.40.50.12740 1712 1833 8.3E-25 T 12-10-2018 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SUPERFAMILY SSF52172 1713 1832 1.57E-22 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SUPERFAMILY SSF52172 1830 1954 1.85E-21 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Gene3D G3DSA:1.10.8.500 952 1007 3.6E-8 T 12-10-2018 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Gene3D G3DSA:1.10.8.500 493 548 3.8E-7 T 12-10-2018 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Gene3D G3DSA:1.10.8.500 1137 1195 1.7E-8 T 12-10-2018 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Gene3D G3DSA:1.10.8.500 861 916 1.3E-6 T 12-10-2018 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Gene3D G3DSA:1.10.8.500 309 362 1.6E-7 T 12-10-2018 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Gene3D G3DSA:1.10.8.500 217 272 2.0E-7 T 12-10-2018 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Gene3D G3DSA:1.10.8.500 769 823 5.3E-8 T 12-10-2018 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Gene3D G3DSA:1.10.8.500 585 638 5.0E-7 T 12-10-2018 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Gene3D G3DSA:1.10.8.500 677 731 1.6E-7 T 12-10-2018 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Gene3D G3DSA:1.10.8.500 400 456 2.3E-7 T 12-10-2018 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SMART SM00387 1539 1664 5.3E-39 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Gene3D G3DSA:3.30.565.10 1491 1665 2.9E-48 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Pfam PF00072 Response regulator receiver domain 1981 2093 4.5E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Pfam PF00072 Response regulator receiver domain 1836 1943 2.2E-16 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 Pfam PF00072 Response regulator receiver domain 1714 1818 4.7E-14 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SUPERFAMILY SSF58104 786 967 8.11E-15 T 12-10-2018 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1589 1603 1.5E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1607 1617 1.5E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1624 1642 1.5E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1648 1661 1.5E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SUPERFAMILY SSF58104 970 1151 1.44E-12 T 12-10-2018 AMJ96_PD00363 877f5d0de1f8ea923ab18e29a7289e43 2099 SUPERFAMILY SSF47384 1409 1492 1.35E-18 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_PB00374 c50011c05c95fa2b8e161b30f69e94f8 287 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 109 192 7.8E-11 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PB00374 c50011c05c95fa2b8e161b30f69e94f8 287 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 205 279 2.6E-9 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PB00374 c50011c05c95fa2b8e161b30f69e94f8 287 SUPERFAMILY SSF46626 30 197 3.49E-26 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_PB00374 c50011c05c95fa2b8e161b30f69e94f8 287 Gene3D G3DSA:1.10.760.10 173 260 6.0E-57 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_PB00374 c50011c05c95fa2b8e161b30f69e94f8 287 PRINTS PR00605 Class IC cytochrome C signature 119 130 1.7E-6 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 AMJ96_PB00374 c50011c05c95fa2b8e161b30f69e94f8 287 PRINTS PR00605 Class IC cytochrome C signature 258 280 1.7E-6 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 AMJ96_PB00374 c50011c05c95fa2b8e161b30f69e94f8 287 PIRSF PIRSF000006 1 287 1.6E-110 T 12-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III AMJ96_PB00374 c50011c05c95fa2b8e161b30f69e94f8 287 Gene3D G3DSA:1.10.760.10 84 283 6.0E-57 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_PB00374 c50011c05c95fa2b8e161b30f69e94f8 287 SUPERFAMILY SSF46626 199 285 1.69E-21 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_PB00374 c50011c05c95fa2b8e161b30f69e94f8 287 Gene3D G3DSA:1.20.58.1490 1 69 2.8E-21 T 12-10-2018 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily AMJ96_PB00374 c50011c05c95fa2b8e161b30f69e94f8 287 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 8 286 7.6E-101 T 12-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III AMJ96_PB00374 c50011c05c95fa2b8e161b30f69e94f8 287 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 11 57 1.2E-25 T 12-10-2018 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal AMJ96_CH04312 307ae1caea37443214f1e0600724ffc7 480 Pfam PF07171 MlrC C-terminus 289 451 1.2E-48 T 12-10-2018 IPR010799 Microcystin LR degradation protein MlrC, C-terminal AMJ96_CH04312 307ae1caea37443214f1e0600724ffc7 480 Pfam PF07364 Metallopeptidase family M81 2 280 2.5E-99 T 12-10-2018 IPR015995 Microcystin LR degradation protein MlrC, N-terminal AMJ96_CH04312 307ae1caea37443214f1e0600724ffc7 480 PIRSF PIRSF012702 1 472 5.9E-137 T 12-10-2018 IPR009197 Microcystin LR degradation protein MlrC AMJ96_PC00025 29c54e30dfba8a0485ad4efc384eaf8f 468 Pfam PF13454 FAD-NAD(P)-binding 24 180 1.1E-27 T 12-10-2018 IPR038732 FAD-dependent urate hydroxylase HpyO, FAD/NAD(P)-binding domain AMJ96_PC00025 29c54e30dfba8a0485ad4efc384eaf8f 468 SUPERFAMILY SSF51905 21 255 1.17E-8 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00552 264bf98c6dbe9dce73bd6a9e33358286 322 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 271 287 2.9E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_PD00552 264bf98c6dbe9dce73bd6a9e33358286 322 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 256 271 2.9E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_PD00552 264bf98c6dbe9dce73bd6a9e33358286 322 Pfam PF12833 Helix-turn-helix domain 210 288 1.4E-19 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PD00552 264bf98c6dbe9dce73bd6a9e33358286 322 Gene3D G3DSA:1.10.10.60 189 294 4.9E-26 T 12-10-2018 AMJ96_PD00552 264bf98c6dbe9dce73bd6a9e33358286 322 SUPERFAMILY SSF46689 240 290 8.51E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00552 264bf98c6dbe9dce73bd6a9e33358286 322 SUPERFAMILY SSF51182 32 73 1.09E-5 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_PD00552 264bf98c6dbe9dce73bd6a9e33358286 322 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 241 283 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_PD00552 264bf98c6dbe9dce73bd6a9e33358286 322 SUPERFAMILY SSF46689 187 237 1.75E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00552 264bf98c6dbe9dce73bd6a9e33358286 322 Pfam PF12852 Cupin 5 171 1.4E-28 T 12-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain AMJ96_PD00552 264bf98c6dbe9dce73bd6a9e33358286 322 SMART SM00342 204 287 2.1E-27 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH04273 8fca4a558fe126afc50653371486b5dc 134 SMART SM00363 13 78 1.8E-12 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH04273 8fca4a558fe126afc50653371486b5dc 134 Gene3D G3DSA:3.10.290.10 8 112 1.4E-28 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMJ96_CH04273 8fca4a558fe126afc50653371486b5dc 134 SUPERFAMILY SSF55174 12 95 1.16E-23 T 12-10-2018 AMJ96_CH04273 8fca4a558fe126afc50653371486b5dc 134 Pfam PF01479 S4 domain 13 60 3.9E-13 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_PD00300 95c66e48bcdb121370537b7820926e2e 434 Pfam PF03428 Replication protein C N-terminal domain 13 186 4.5E-74 T 12-10-2018 IPR005090 Replication protein C AMJ96_PD00300 95c66e48bcdb121370537b7820926e2e 434 SUPERFAMILY SSF46785 92 153 3.6E-6 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00300 95c66e48bcdb121370537b7820926e2e 434 Pfam PF11800 Replication protein C C-terminal region 194 426 8.7E-82 T 12-10-2018 IPR021760 Replication protein-C C-terminal AMJ96_CH03318 a856cb5960b6a71ba8fc9b62834b017b 477 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 273 284 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMJ96_CH03318 a856cb5960b6a71ba8fc9b62834b017b 477 Gene3D G3DSA:3.40.605.10 19 471 1.0E-158 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_CH03318 a856cb5960b6a71ba8fc9b62834b017b 477 Gene3D G3DSA:3.40.309.10 249 441 1.0E-158 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_CH03318 a856cb5960b6a71ba8fc9b62834b017b 477 Pfam PF00171 Aldehyde dehydrogenase family 15 472 4.3E-161 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_CH03318 a856cb5960b6a71ba8fc9b62834b017b 477 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMJ96_CH03318 a856cb5960b6a71ba8fc9b62834b017b 477 SUPERFAMILY SSF53720 2 473 1.7E-156 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_CH02946 3161c1a084f892246fb36f3d5c4c6586 219 Pfam PF02211 Nitrile hydratase beta subunit 1 217 1.2E-85 T 12-10-2018 IPR024690 Nitrile hydratase beta subunit domain GO:0018822 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 AMJ96_CH02946 3161c1a084f892246fb36f3d5c4c6586 219 Gene3D G3DSA:2.30.30.50 123 219 1.9E-37 T 12-10-2018 AMJ96_CH02946 3161c1a084f892246fb36f3d5c4c6586 219 Gene3D G3DSA:1.10.472.20 1 119 9.7E-43 T 12-10-2018 AMJ96_CH02946 3161c1a084f892246fb36f3d5c4c6586 219 PIRSF PIRSF001427 1 219 1.3E-71 T 12-10-2018 IPR003168 Nitrile hydratase, beta subunit GO:0006807|GO:0018822|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 AMJ96_CH02946 3161c1a084f892246fb36f3d5c4c6586 219 SUPERFAMILY SSF50090 1 218 3.73E-84 T 12-10-2018 IPR008990 Electron transport accessory-like domain superfamily AMJ96_CH02946 3161c1a084f892246fb36f3d5c4c6586 219 TIGRFAM TIGR03888 nitrile_beta: nitrile hydratase, beta subunit 1 218 1.1E-75 T 12-10-2018 IPR003168 Nitrile hydratase, beta subunit GO:0006807|GO:0018822|GO:0046914 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 AMJ96_CH00428 e8d618ffcb02a6da34323fcc83e229e9 299 SUPERFAMILY SSF53613 2 298 2.34E-71 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_CH00428 e8d618ffcb02a6da34323fcc83e229e9 299 Gene3D G3DSA:3.40.1190.20 1 298 3.2E-87 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_CH00428 e8d618ffcb02a6da34323fcc83e229e9 299 Hamap MF_01987 Ribokinase [rbsK]. 1 298 22.629 T 12-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 AMJ96_CH00428 e8d618ffcb02a6da34323fcc83e229e9 299 PRINTS PR00990 Ribokinase signature 214 225 9.0E-37 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AMJ96_CH00428 e8d618ffcb02a6da34323fcc83e229e9 299 PRINTS PR00990 Ribokinase signature 4 25 9.0E-37 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AMJ96_CH00428 e8d618ffcb02a6da34323fcc83e229e9 299 PRINTS PR00990 Ribokinase signature 170 185 9.0E-37 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AMJ96_CH00428 e8d618ffcb02a6da34323fcc83e229e9 299 PRINTS PR00990 Ribokinase signature 31 50 9.0E-37 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AMJ96_CH00428 e8d618ffcb02a6da34323fcc83e229e9 299 PRINTS PR00990 Ribokinase signature 102 115 9.0E-37 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AMJ96_CH00428 e8d618ffcb02a6da34323fcc83e229e9 299 Pfam PF00294 pfkB family carbohydrate kinase 2 290 1.4E-58 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 SUPERFAMILY SSF52540 452 742 2.03E-75 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 317 329 - T 12-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 15 63 9.8E-12 T 12-10-2018 IPR004176 Clp, N-terminal AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 Gene3D G3DSA:1.10.1780.10 4 144 1.2E-39 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 SUPERFAMILY SSF81923 4 143 4.32E-56 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 SMART SM00382 221 365 1.2E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 SMART SM00382 502 665 3.2E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 Gene3D G3DSA:3.40.50.300 454 666 3.4E-76 T 12-10-2018 AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 SMART SM01086 668 760 2.4E-34 T 12-10-2018 IPR019489 Clp ATPase, C-terminal AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 226 357 2.2E-12 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 5 749 0.0 T 12-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 533 551 - T 12-10-2018 IPR028299 ClpA/B, conserved site 2 AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 SUPERFAMILY SSF52540 182 431 1.66E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 Gene3D G3DSA:1.10.8.60 668 759 1.4E-28 T 12-10-2018 AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 Pfam PF07724 AAA domain (Cdc48 subfamily) 501 662 2.3E-46 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 Gene3D G3DSA:1.10.8.60 366 453 3.7E-29 T 12-10-2018 AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 610 624 1.1E-36 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 506 524 1.1E-36 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 577 595 1.1E-36 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 548 566 1.1E-36 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 Gene3D G3DSA:3.40.50.300 173 365 9.9E-64 T 12-10-2018 AMJ96_CH01970 dd952a6c02b431ba131db299b6f120b7 829 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 670 748 3.5E-24 T 12-10-2018 IPR019489 Clp ATPase, C-terminal AMJ96_CH04349 957fcb45ddc07f4dd53e28d3f46a1981 232 Pfam PF01569 PAP2 superfamily 89 199 2.9E-22 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMJ96_CH04349 957fcb45ddc07f4dd53e28d3f46a1981 232 SMART SM00014 86 199 2.3E-15 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMJ96_CH04349 957fcb45ddc07f4dd53e28d3f46a1981 232 SUPERFAMILY SSF48317 7 223 1.31E-40 T 12-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily AMJ96_CH04349 957fcb45ddc07f4dd53e28d3f46a1981 232 Gene3D G3DSA:1.20.144.10 4 118 1.0E-6 T 12-10-2018 AMJ96_CH04349 957fcb45ddc07f4dd53e28d3f46a1981 232 Gene3D G3DSA:1.20.144.10 124 210 1.9E-16 T 12-10-2018 AMJ96_CH03601 f8c9ffc255013bfb5c9a41530b017b6f 244 Gene3D G3DSA:2.60.120.1460 36 238 1.3E-33 T 12-10-2018 AMJ96_CH03601 f8c9ffc255013bfb5c9a41530b017b6f 244 Pfam PF00027 Cyclic nucleotide-binding domain 44 130 2.0E-8 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_CH03601 f8c9ffc255013bfb5c9a41530b017b6f 244 Pfam PF13545 Crp-like helix-turn-helix domain 163 235 4.6E-15 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03601 f8c9ffc255013bfb5c9a41530b017b6f 244 SUPERFAMILY SSF46785 162 238 9.33E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03601 f8c9ffc255013bfb5c9a41530b017b6f 244 SUPERFAMILY SSF51206 39 154 6.94E-17 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like AMJ96_PD00464 dcf7bd57421c99bf3015b15733cab70b 493 PIRSF PIRSF037495 8 482 6.3E-169 T 12-10-2018 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B GO:0016491|GO:0055114 AMJ96_PD00464 dcf7bd57421c99bf3015b15733cab70b 493 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 270 284 1.8E-12 T 12-10-2018 AMJ96_PD00464 dcf7bd57421c99bf3015b15733cab70b 493 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 170 195 1.8E-12 T 12-10-2018 AMJ96_PD00464 dcf7bd57421c99bf3015b15733cab70b 493 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 129 138 1.8E-12 T 12-10-2018 AMJ96_PD00464 dcf7bd57421c99bf3015b15733cab70b 493 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 16 38 1.8E-12 T 12-10-2018 AMJ96_PD00464 dcf7bd57421c99bf3015b15733cab70b 493 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 301 323 2.3E-13 T 12-10-2018 AMJ96_PD00464 dcf7bd57421c99bf3015b15733cab70b 493 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 126 144 2.3E-13 T 12-10-2018 AMJ96_PD00464 dcf7bd57421c99bf3015b15733cab70b 493 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 17 36 2.3E-13 T 12-10-2018 AMJ96_PD00464 dcf7bd57421c99bf3015b15733cab70b 493 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 269 285 2.3E-13 T 12-10-2018 AMJ96_PD00464 dcf7bd57421c99bf3015b15733cab70b 493 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 15 332 3.8E-19 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_PD00464 dcf7bd57421c99bf3015b15733cab70b 493 SUPERFAMILY SSF51905 12 341 1.51E-29 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00464 dcf7bd57421c99bf3015b15733cab70b 493 Pfam PF04324 BFD-like [2Fe-2S] binding domain 394 445 9.8E-8 T 12-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AMJ96_CH02985 f55ccedeb31a5c53fe35b1db23d1b2af 158 Gene3D G3DSA:3.10.180.70 1 158 3.5E-57 T 12-10-2018 AMJ96_CH02985 f55ccedeb31a5c53fe35b1db23d1b2af 158 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 3 118 2.8E-40 T 12-10-2018 IPR028973 PhnB-like AMJ96_CH02985 f55ccedeb31a5c53fe35b1db23d1b2af 158 SUPERFAMILY SSF54593 3 156 1.37E-45 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH02985 f55ccedeb31a5c53fe35b1db23d1b2af 158 PIRSF PIRSF021700 1 158 4.3E-65 T 12-10-2018 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase AMJ96_CH00667 301cdf390ef1863887c1b798ea823dba 234 Pfam PF00196 Bacterial regulatory proteins, luxR family 172 227 1.8E-16 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00667 301cdf390ef1863887c1b798ea823dba 234 SMART SM00421 170 227 1.2E-19 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00667 301cdf390ef1863887c1b798ea823dba 234 SUPERFAMILY SSF46894 164 233 9.52E-19 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH00667 301cdf390ef1863887c1b798ea823dba 234 Gene3D G3DSA:1.10.10.10 168 233 1.7E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00667 301cdf390ef1863887c1b798ea823dba 234 ProSitePatterns PS00622 LuxR-type HTH domain signature. 187 214 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00667 301cdf390ef1863887c1b798ea823dba 234 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 187 203 5.6E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00667 301cdf390ef1863887c1b798ea823dba 234 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 173 187 5.6E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00667 301cdf390ef1863887c1b798ea823dba 234 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 203 215 5.6E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00359 e78d45f4c7f8771bb8f103554a687f8d 412 ProSitePatterns PS00216 Sugar transport proteins signature 1. 83 99 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMJ96_CH00359 e78d45f4c7f8771bb8f103554a687f8d 412 Pfam PF07690 Major Facilitator Superfamily 33 252 2.7E-27 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH00359 e78d45f4c7f8771bb8f103554a687f8d 412 SUPERFAMILY SSF103473 22 406 3.92E-55 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH00359 e78d45f4c7f8771bb8f103554a687f8d 412 Gene3D G3DSA:1.20.1250.20 24 406 4.0E-45 T 12-10-2018 AMJ96_CH04002 8ca9279332a92619ca07b1ea90e37817 285 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 151 171 - T 12-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site AMJ96_CH04002 8ca9279332a92619ca07b1ea90e37817 285 SUPERFAMILY SSF56317 3 265 1.96E-77 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMJ96_CH04002 8ca9279332a92619ca07b1ea90e37817 285 Gene3D G3DSA:3.60.110.10 3 270 6.9E-85 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMJ96_CH04002 8ca9279332a92619ca07b1ea90e37817 285 Pfam PF00795 Carbon-nitrogen hydrolase 4 257 2.9E-51 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AMJ96_PB00137 618a2e3140895d77ad06905505a9c32a 495 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 264 271 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMJ96_PB00137 618a2e3140895d77ad06905505a9c32a 495 Pfam PF00171 Aldehyde dehydrogenase family 35 488 1.8E-161 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_PB00137 618a2e3140895d77ad06905505a9c32a 495 Gene3D G3DSA:3.40.605.10 34 482 1.0E-175 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_PB00137 618a2e3140895d77ad06905505a9c32a 495 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 292 303 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMJ96_PB00137 618a2e3140895d77ad06905505a9c32a 495 Gene3D G3DSA:3.40.309.10 268 457 1.0E-175 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_PB00137 618a2e3140895d77ad06905505a9c32a 495 SUPERFAMILY SSF53720 13 491 1.24E-163 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_PB00137 618a2e3140895d77ad06905505a9c32a 495 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 39 486 1.1E-208 T 12-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 AMJ96_CH00020 440dd36687ade8612bddd42a12b27913 222 SUPERFAMILY SSF51366 4 210 5.49E-57 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMJ96_CH00020 440dd36687ade8612bddd42a12b27913 222 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 5 208 3.6E-44 T 12-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 AMJ96_CH00020 440dd36687ade8612bddd42a12b27913 222 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 3 213 37.414 T 12-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 AMJ96_CH00020 440dd36687ade8612bddd42a12b27913 222 Gene3D G3DSA:3.20.20.70 2 212 1.2E-57 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH03449 c1a8a3cf563951749ccae506b4feab43 338 PRINTS PR01713 Nucleotide sugar epimerase signature 295 312 1.8E-20 T 12-10-2018 AMJ96_CH03449 c1a8a3cf563951749ccae506b4feab43 338 PRINTS PR01713 Nucleotide sugar epimerase signature 29 45 1.8E-20 T 12-10-2018 AMJ96_CH03449 c1a8a3cf563951749ccae506b4feab43 338 PRINTS PR01713 Nucleotide sugar epimerase signature 216 231 1.8E-20 T 12-10-2018 AMJ96_CH03449 c1a8a3cf563951749ccae506b4feab43 338 PRINTS PR01713 Nucleotide sugar epimerase signature 256 271 1.8E-20 T 12-10-2018 AMJ96_CH03449 c1a8a3cf563951749ccae506b4feab43 338 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 231 3.0E-54 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_CH03449 c1a8a3cf563951749ccae506b4feab43 338 Gene3D G3DSA:3.40.50.720 5 316 6.9E-92 T 12-10-2018 AMJ96_CH03449 c1a8a3cf563951749ccae506b4feab43 338 SUPERFAMILY SSF51735 1 332 6.2E-86 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03449 c1a8a3cf563951749ccae506b4feab43 338 Gene3D G3DSA:3.90.25.10 180 328 6.9E-92 T 12-10-2018 AMJ96_CH01601 0d8013e1be7ce1ce2e4bb3d71973807a 396 Gene3D G3DSA:1.20.1720.10 17 388 2.1E-70 T 12-10-2018 AMJ96_CH01601 0d8013e1be7ce1ce2e4bb3d71973807a 396 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 15 385 6.1E-89 T 12-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 AMJ96_CH01601 0d8013e1be7ce1ce2e4bb3d71973807a 396 Pfam PF07690 Major Facilitator Superfamily 25 357 6.9E-37 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH01601 0d8013e1be7ce1ce2e4bb3d71973807a 396 SUPERFAMILY SSF103473 16 388 1.7E-48 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH02842 b3a3a2f208d6a20a704938d67c4852f6 216 Gene3D G3DSA:1.10.10.10 25 149 1.0E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02842 b3a3a2f208d6a20a704938d67c4852f6 216 SUPERFAMILY SSF46785 26 142 8.06E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02842 b3a3a2f208d6a20a704938d67c4852f6 216 Pfam PF12840 Helix-turn-helix domain 27 81 3.5E-15 T 12-10-2018 AMJ96_CH02842 b3a3a2f208d6a20a704938d67c4852f6 216 SMART SM00418 26 111 5.7E-7 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH00760 d997dad506bbb9cdc0ed36482e862bfa 303 Gene3D G3DSA:1.10.3720.10 7 300 8.8E-55 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00760 d997dad506bbb9cdc0ed36482e862bfa 303 SUPERFAMILY SSF161098 7 298 1.31E-57 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00760 d997dad506bbb9cdc0ed36482e862bfa 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 294 7.7E-19 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00296 fd7227a4cf8aee9332ef1693e3a3c7ad 459 SUPERFAMILY SSF53067 9 243 1.32E-19 T 12-10-2018 AMJ96_PC00296 fd7227a4cf8aee9332ef1693e3a3c7ad 459 Gene3D G3DSA:3.30.420.40 237 459 1.1E-65 T 12-10-2018 AMJ96_PC00296 fd7227a4cf8aee9332ef1693e3a3c7ad 459 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 10 244 2.9E-17 T 12-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AMJ96_PC00296 fd7227a4cf8aee9332ef1693e3a3c7ad 459 Gene3D G3DSA:3.30.420.40 3 236 5.6E-28 T 12-10-2018 AMJ96_PC00296 fd7227a4cf8aee9332ef1693e3a3c7ad 459 SUPERFAMILY SSF53067 9 429 1.51E-9 T 12-10-2018 AMJ96_CH01354 bfce9fd5bafda738ecaf06c058e5b82a 407 Gene3D G3DSA:1.20.1250.20 21 396 2.6E-42 T 12-10-2018 AMJ96_CH01354 bfce9fd5bafda738ecaf06c058e5b82a 407 SUPERFAMILY SSF103473 25 401 5.62E-54 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH01354 bfce9fd5bafda738ecaf06c058e5b82a 407 Pfam PF07690 Major Facilitator Superfamily 31 342 1.3E-34 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_PC00466 a34a515b5db27635dee7c01723e3d0ca 398 Pfam PF13614 AAA domain 115 290 2.0E-35 T 12-10-2018 IPR025669 AAA domain AMJ96_PC00466 a34a515b5db27635dee7c01723e3d0ca 398 TIGRFAM TIGR03453 partition_RepA: plasmid partitioning protein RepA 12 397 3.1E-193 T 12-10-2018 IPR017818 Plasmid partitioning protein, RepA AMJ96_PC00466 a34a515b5db27635dee7c01723e3d0ca 398 Gene3D G3DSA:3.40.50.300 115 394 1.3E-62 T 12-10-2018 AMJ96_PC00466 a34a515b5db27635dee7c01723e3d0ca 398 SUPERFAMILY SSF52540 112 364 4.8E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00357 4f6db93d136999a2aae78e0637dd98f8 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 4.9E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00357 4f6db93d136999a2aae78e0637dd98f8 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 4.9E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00357 4f6db93d136999a2aae78e0637dd98f8 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 4.9E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00357 4f6db93d136999a2aae78e0637dd98f8 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 4.9E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00357 4f6db93d136999a2aae78e0637dd98f8 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 4.9E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00357 4f6db93d136999a2aae78e0637dd98f8 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 4.9E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00357 4f6db93d136999a2aae78e0637dd98f8 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 250 1.8E-65 T 12-10-2018 AMJ96_CH00357 4f6db93d136999a2aae78e0637dd98f8 254 SUPERFAMILY SSF51735 5 251 2.98E-78 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00357 4f6db93d136999a2aae78e0637dd98f8 254 Gene3D G3DSA:3.40.50.720 1 252 1.5E-78 T 12-10-2018 AMJ96_CH00357 4f6db93d136999a2aae78e0637dd98f8 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.3E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00357 4f6db93d136999a2aae78e0637dd98f8 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 2.3E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00253 0aee0e9d72adbe56b63622d5350b6391 240 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 81 4.1E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00253 0aee0e9d72adbe56b63622d5350b6391 240 SUPERFAMILY SSF46785 17 85 5.76E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00253 0aee0e9d72adbe56b63622d5350b6391 240 SMART SM00895 108 230 7.2E-17 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PC00253 0aee0e9d72adbe56b63622d5350b6391 240 Pfam PF07729 FCD domain 109 223 1.1E-19 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PC00253 0aee0e9d72adbe56b63622d5350b6391 240 Gene3D G3DSA:1.10.10.10 18 92 2.4E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00253 0aee0e9d72adbe56b63622d5350b6391 240 SUPERFAMILY SSF48008 105 237 1.91E-24 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PC00253 0aee0e9d72adbe56b63622d5350b6391 240 Gene3D G3DSA:1.20.120.530 94 240 7.1E-24 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PC00253 0aee0e9d72adbe56b63622d5350b6391 240 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 5.6E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00253 0aee0e9d72adbe56b63622d5350b6391 240 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 5.6E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00253 0aee0e9d72adbe56b63622d5350b6391 240 SMART SM00345 23 82 6.3E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PA00247 eba635c723ae0446fd2a14f38a69175b 344 Gene3D G3DSA:1.10.260.40 1 47 5.0E-12 T 12-10-2018 AMJ96_PA00247 eba635c723ae0446fd2a14f38a69175b 344 Pfam PF13407 Periplasmic binding protein domain 118 317 1.8E-21 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_PA00247 eba635c723ae0446fd2a14f38a69175b 344 SMART SM00354 3 75 3.8E-4 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00247 eba635c723ae0446fd2a14f38a69175b 344 Gene3D G3DSA:3.40.50.2300 175 324 1.8E-23 T 12-10-2018 AMJ96_PA00247 eba635c723ae0446fd2a14f38a69175b 344 ProSitePatterns PS00356 LacI-type HTH domain signature. 6 24 - T 12-10-2018 AMJ96_PA00247 eba635c723ae0446fd2a14f38a69175b 344 SUPERFAMILY SSF47413 2 48 3.29E-10 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PA00247 eba635c723ae0446fd2a14f38a69175b 344 SUPERFAMILY SSF53822 65 327 9.62E-29 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PA00247 eba635c723ae0446fd2a14f38a69175b 344 Gene3D G3DSA:3.40.50.2300 63 174 1.5E-5 T 12-10-2018 AMJ96_PA00247 eba635c723ae0446fd2a14f38a69175b 344 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 47 4.2E-9 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH02048 94baf14b2c3ab6963248534ea66297be 279 SUPERFAMILY SSF101386 151 249 1.13E-25 T 12-10-2018 AMJ96_CH02048 94baf14b2c3ab6963248534ea66297be 279 TIGRFAM TIGR00444 mazG: MazG family protein 13 270 6.4E-92 T 12-10-2018 IPR011551 NTP pyrophosphohydrolase MazG AMJ96_CH02048 94baf14b2c3ab6963248534ea66297be 279 Gene3D G3DSA:1.10.287.1080 4 127 6.0E-48 T 12-10-2018 AMJ96_CH02048 94baf14b2c3ab6963248534ea66297be 279 Gene3D G3DSA:1.10.287.1080 145 275 2.2E-44 T 12-10-2018 AMJ96_CH02048 94baf14b2c3ab6963248534ea66297be 279 SUPERFAMILY SSF101386 5 108 8.18E-26 T 12-10-2018 AMJ96_CH02048 94baf14b2c3ab6963248534ea66297be 279 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 177 242 8.4E-9 T 12-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core AMJ96_CH02048 94baf14b2c3ab6963248534ea66297be 279 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 30 103 5.0E-29 T 12-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core AMJ96_CH00350 03d4e2bc3812a9fc70590a93103deb94 133 Gene3D G3DSA:2.170.150.70 3 116 4.3E-13 T 12-10-2018 AMJ96_CH00350 03d4e2bc3812a9fc70590a93103deb94 133 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 25 115 1.7E-21 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMJ96_CH00350 03d4e2bc3812a9fc70590a93103deb94 133 SUPERFAMILY SSF51316 1 131 4.5E-38 T 12-10-2018 IPR011057 Mss4-like superfamily AMJ96_PD00511 68bd87342530133ccdc9331911b323da 194 Pfam PF07811 TadE-like protein 30 64 1.9E-9 T 12-10-2018 IPR012495 TadE-like AMJ96_CH00650 a6ce9b6bf33e35cf8a55951a8f9d0f33 328 Gene3D G3DSA:3.40.50.2300 52 304 3.2E-76 T 12-10-2018 AMJ96_CH00650 a6ce9b6bf33e35cf8a55951a8f9d0f33 328 SUPERFAMILY SSF53822 45 327 1.72E-70 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH00650 a6ce9b6bf33e35cf8a55951a8f9d0f33 328 Pfam PF13407 Periplasmic binding protein domain 47 310 2.2E-56 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_CH00650 a6ce9b6bf33e35cf8a55951a8f9d0f33 328 Gene3D G3DSA:3.40.50.2300 155 291 3.2E-76 T 12-10-2018 AMJ96_CH01153 bb79e8ecde79bc9f598fc6e3e3026801 221 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 160 192 1.6E-7 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH01153 bb79e8ecde79bc9f598fc6e3e3026801 221 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 125 159 1.4E-6 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH01153 bb79e8ecde79bc9f598fc6e3e3026801 221 SUPERFAMILY SSF51161 2 205 4.57E-34 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily AMJ96_CH01153 bb79e8ecde79bc9f598fc6e3e3026801 221 Gene3D G3DSA:2.160.10.10 92 220 1.0E-24 T 12-10-2018 AMJ96_CH01153 bb79e8ecde79bc9f598fc6e3e3026801 221 TIGRFAM TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 4 205 3.1E-54 T 12-10-2018 IPR020019 Sialic acid O-acyltransferase NeuD-like AMJ96_CH01973 033c00fd0175cb41281bca70db8d26d9 238 Gene3D G3DSA:3.20.20.190 2 230 2.3E-43 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMJ96_CH01973 033c00fd0175cb41281bca70db8d26d9 238 SUPERFAMILY SSF51695 12 217 1.44E-50 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMJ96_CH01973 033c00fd0175cb41281bca70db8d26d9 238 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 14 218 1.0E-21 T 12-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 AMJ96_PA00223 44a434cbf0247129386e59dfd099339b 88 SUPERFAMILY SSF143120 10 57 7.98E-12 T 12-10-2018 IPR036165 YefM-like superfamily AMJ96_PA00223 44a434cbf0247129386e59dfd099339b 88 Gene3D G3DSA:3.40.1620.10 7 56 5.8E-17 T 12-10-2018 AMJ96_PA00223 44a434cbf0247129386e59dfd099339b 88 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 9 62 2.4E-14 T 12-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM AMJ96_PA00223 44a434cbf0247129386e59dfd099339b 88 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 10 52 1.1E-14 T 12-10-2018 AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 534 820 26.95 T 12-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 SUPERFAMILY SSF82866 317 514 1.7E-40 T 12-10-2018 AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 Pfam PF07549 SecD/SecF GG Motif 38 63 1.1E-5 T 12-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 Pfam PF07549 SecD/SecF GG Motif 557 582 4.1E-6 T 12-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 46 505 8.3E-133 T 12-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 Gene3D G3DSA:3.30.70.1430 573 584 2.1E-8 T 12-10-2018 AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 Gene3D G3DSA:1.20.1640.10 354 516 2.1E-8 T 12-10-2018 AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 Gene3D G3DSA:1.20.1640.10 634 827 2.9E-14 T 12-10-2018 AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 1 522 43.334 T 12-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 SUPERFAMILY SSF82866 597 822 1.31E-41 T 12-10-2018 AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 562 809 1.6E-71 T 12-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 Gene3D G3DSA:3.30.70.3400 134 214 1.0E-16 T 12-10-2018 AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 Gene3D G3DSA:3.30.70.3400 46 121 4.0E-7 T 12-10-2018 AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 PRINTS PR01755 Bacterial translocase SecF protein signature 725 743 6.5E-27 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 PRINTS PR01755 Bacterial translocase SecF protein signature 561 576 6.5E-27 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 PRINTS PR01755 Bacterial translocase SecF protein signature 677 691 6.5E-27 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 PRINTS PR01755 Bacterial translocase SecF protein signature 757 772 6.5E-27 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 Gene3D G3DSA:3.30.1360.200 215 331 1.6E-38 T 12-10-2018 AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 270 500 3.0E-77 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 620 806 2.7E-47 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 Gene3D G3DSA:1.20.1640.10 517 572 2.1E-8 T 12-10-2018 AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 Pfam PF02355 Protein export membrane protein 633 817 5.1E-60 T 12-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AMJ96_CH00670 b871b1bbd27e8d5afec1a57c10a49cc3 849 Pfam PF02355 Protein export membrane protein 339 501 6.3E-15 T 12-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AMJ96_CH03849 f5c89fc5b3b87b2662df12cdd47193ea 997 Gene3D G3DSA:3.10.20.440 12 106 2.8E-9 T 12-10-2018 AMJ96_CH03849 f5c89fc5b3b87b2662df12cdd47193ea 997 SUPERFAMILY SSF51905 143 480 1.1E-32 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03849 f5c89fc5b3b87b2662df12cdd47193ea 997 Pfam PF01571 Aminomethyltransferase folate-binding domain 613 879 2.2E-71 T 12-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain AMJ96_CH03849 f5c89fc5b3b87b2662df12cdd47193ea 997 Gene3D G3DSA:3.50.50.60 295 417 6.2E-93 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03849 f5c89fc5b3b87b2662df12cdd47193ea 997 PIRSF PIRSF037980 1 997 0.0 T 12-10-2018 IPR006277 Sarcosine oxidase, alpha subunit GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 AMJ96_CH03849 f5c89fc5b3b87b2662df12cdd47193ea 997 Gene3D G3DSA:1.10.10.1100 505 581 6.2E-93 T 12-10-2018 AMJ96_CH03849 f5c89fc5b3b87b2662df12cdd47193ea 997 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 885 984 4.6E-14 T 12-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMJ96_CH03849 f5c89fc5b3b87b2662df12cdd47193ea 997 SUPERFAMILY SSF103025 607 893 5.65E-94 T 12-10-2018 AMJ96_CH03849 f5c89fc5b3b87b2662df12cdd47193ea 997 Gene3D G3DSA:3.30.1360.120 603 988 1.6E-97 T 12-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMJ96_CH03849 f5c89fc5b3b87b2662df12cdd47193ea 997 SUPERFAMILY SSF101790 899 994 9.16E-19 T 12-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal AMJ96_CH03849 f5c89fc5b3b87b2662df12cdd47193ea 997 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 194 2.1E-10 T 12-10-2018 AMJ96_CH03849 f5c89fc5b3b87b2662df12cdd47193ea 997 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 286 295 2.1E-10 T 12-10-2018 AMJ96_CH03849 f5c89fc5b3b87b2662df12cdd47193ea 997 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 410 424 2.1E-10 T 12-10-2018 AMJ96_CH03849 f5c89fc5b3b87b2662df12cdd47193ea 997 TIGRFAM TIGR01372 soxA: sarcosine oxidase, alpha subunit family 4 997 0.0 T 12-10-2018 IPR006277 Sarcosine oxidase, alpha subunit GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 AMJ96_CH03849 f5c89fc5b3b87b2662df12cdd47193ea 997 Gene3D G3DSA:3.50.50.60 172 588 6.2E-93 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03849 f5c89fc5b3b87b2662df12cdd47193ea 997 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 172 431 2.1E-14 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_CH03849 f5c89fc5b3b87b2662df12cdd47193ea 997 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 18 102 4.4E-26 T 12-10-2018 AMJ96_CH03849 f5c89fc5b3b87b2662df12cdd47193ea 997 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 409 425 1.3E-11 T 12-10-2018 AMJ96_CH03849 f5c89fc5b3b87b2662df12cdd47193ea 997 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 173 192 1.3E-11 T 12-10-2018 AMJ96_CH03849 f5c89fc5b3b87b2662df12cdd47193ea 997 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 301 1.3E-11 T 12-10-2018 AMJ96_CH03179 7e852d3e0acbe366f401fd1050d1f06f 264 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 28 259 1.9E-70 T 12-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase AMJ96_CH03179 7e852d3e0acbe366f401fd1050d1f06f 264 Gene3D G3DSA:3.60.140.10 7 263 1.2E-87 T 12-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily AMJ96_CH03179 7e852d3e0acbe366f401fd1050d1f06f 264 SUPERFAMILY SSF64438 21 261 2.93E-85 T 12-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic AMJ96_CH03179 7e852d3e0acbe366f401fd1050d1f06f 264 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 39 248 2.5E-49 T 12-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase AMJ96_CH02829 38e5b39f00da7f182b204a7bb99f05e8 470 SMART SM00345 21 80 1.4E-14 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02829 38e5b39f00da7f182b204a7bb99f05e8 470 Gene3D G3DSA:3.40.640.10 151 367 1.9E-83 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH02829 38e5b39f00da7f182b204a7bb99f05e8 470 Gene3D G3DSA:3.90.1150.10 122 455 1.9E-83 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH02829 38e5b39f00da7f182b204a7bb99f05e8 470 SUPERFAMILY SSF53383 103 456 2.13E-85 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH02829 38e5b39f00da7f182b204a7bb99f05e8 470 SUPERFAMILY SSF46785 9 84 3.18E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02829 38e5b39f00da7f182b204a7bb99f05e8 470 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 80 1.7E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02829 38e5b39f00da7f182b204a7bb99f05e8 470 Pfam PF00155 Aminotransferase class I and II 141 454 6.7E-39 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_CH02829 38e5b39f00da7f182b204a7bb99f05e8 470 Gene3D G3DSA:1.10.10.10 17 118 1.4E-16 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01233 0cb923a81b981fd97051f9d259459f2e 295 Gene3D G3DSA:3.30.470.10 1 135 1.9E-32 T 12-10-2018 AMJ96_CH01233 0cb923a81b981fd97051f9d259459f2e 295 ProSitePatterns PS00770 Aminotransferases class-IV signature. 191 220 - T 12-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 AMJ96_CH01233 0cb923a81b981fd97051f9d259459f2e 295 SUPERFAMILY SSF56752 10 293 2.22E-72 T 12-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 AMJ96_CH01233 0cb923a81b981fd97051f9d259459f2e 295 Gene3D G3DSA:3.20.10.10 137 293 2.0E-40 T 12-10-2018 AMJ96_CH01233 0cb923a81b981fd97051f9d259459f2e 295 Pfam PF01063 Amino-transferase class IV 40 264 8.5E-39 T 12-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 AMJ96_CH02521 88db406da7334110b48d1a861bd879d7 377 Gene3D G3DSA:3.40.50.720 1 133 7.6E-29 T 12-10-2018 AMJ96_CH02521 88db406da7334110b48d1a861bd879d7 377 SUPERFAMILY SSF51735 4 172 5.14E-39 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02521 88db406da7334110b48d1a861bd879d7 377 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 118 4.7E-19 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_CH02521 88db406da7334110b48d1a861bd879d7 377 Gene3D G3DSA:3.30.360.10 134 357 1.0E-33 T 12-10-2018 AMJ96_CH02521 88db406da7334110b48d1a861bd879d7 377 SUPERFAMILY SSF55347 129 296 8.01E-31 T 12-10-2018 AMJ96_CH03831 df5a1212c97ec1c8bbd07ab55b1daed4 314 SUPERFAMILY SSF53850 29 269 1.19E-12 T 12-10-2018 AMJ96_CH03831 df5a1212c97ec1c8bbd07ab55b1daed4 314 Gene3D G3DSA:3.40.190.10 116 240 7.6E-73 T 12-10-2018 AMJ96_CH03831 df5a1212c97ec1c8bbd07ab55b1daed4 314 Gene3D G3DSA:3.40.190.150 24 302 7.6E-73 T 12-10-2018 AMJ96_CH03831 df5a1212c97ec1c8bbd07ab55b1daed4 314 PIRSF PIRSF017082 4 314 1.2E-105 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMJ96_CH03831 df5a1212c97ec1c8bbd07ab55b1daed4 314 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 39 311 1.8E-31 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMJ96_PA00080 129d3d2378a12f7cab050e128b0159e5 150 SUPERFAMILY SSF54637 1 148 5.7E-46 T 12-10-2018 IPR029069 HotDog domain superfamily AMJ96_PA00080 129d3d2378a12f7cab050e128b0159e5 150 Gene3D G3DSA:3.10.129.10 1 149 1.2E-52 T 12-10-2018 AMJ96_PA00080 129d3d2378a12f7cab050e128b0159e5 150 Pfam PF01575 MaoC like domain 11 114 1.2E-23 T 12-10-2018 IPR002539 MaoC-like dehydratase domain AMJ96_CH04259 714710f3ce9db9c395f1e044b8827421 416 Pfam PF04551 GcpE protein 17 387 6.2E-108 T 12-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AMJ96_CH04259 714710f3ce9db9c395f1e044b8827421 416 Gene3D G3DSA:3.20.20.20 9 295 3.8E-94 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMJ96_CH04259 714710f3ce9db9c395f1e044b8827421 416 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 10 404 29.606 T 12-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AMJ96_CH04259 714710f3ce9db9c395f1e044b8827421 416 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 12 401 4.0E-131 T 12-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AMJ96_CH04259 714710f3ce9db9c395f1e044b8827421 416 Gene3D G3DSA:3.30.413.10 296 413 2.3E-35 T 12-10-2018 AMJ96_CH04259 714710f3ce9db9c395f1e044b8827421 416 PIRSF PIRSF004640 5 412 8.2E-127 T 12-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AMJ96_CH04259 714710f3ce9db9c395f1e044b8827421 416 SUPERFAMILY SSF56014 301 389 1.44E-5 T 12-10-2018 AMJ96_PD00040 1b7f8eb9f014f25adb3ed8944360a1db 313 Gene3D G3DSA:3.40.50.2300 37 284 1.8E-101 T 12-10-2018 AMJ96_PD00040 1b7f8eb9f014f25adb3ed8944360a1db 313 SUPERFAMILY SSF53822 29 304 2.8E-80 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PD00040 1b7f8eb9f014f25adb3ed8944360a1db 313 Gene3D G3DSA:3.40.50.2300 131 264 1.8E-101 T 12-10-2018 AMJ96_PD00040 1b7f8eb9f014f25adb3ed8944360a1db 313 Pfam PF13407 Periplasmic binding protein domain 30 283 3.9E-62 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_CH01675 9ab76a3b55e42b7c854de46ba5d033de 318 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 7 304 2.9E-95 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMJ96_CH01675 9ab76a3b55e42b7c854de46ba5d033de 318 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 53 60 - T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMJ96_CH01675 9ab76a3b55e42b7c854de46ba5d033de 318 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 158 302 4.7E-27 T 12-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AMJ96_CH01675 9ab76a3b55e42b7c854de46ba5d033de 318 SUPERFAMILY SSF53671 2 304 4.58E-98 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMJ96_CH01675 9ab76a3b55e42b7c854de46ba5d033de 318 PRINTS PR00101 Aspartate carbamoyltransferase signature 43 65 5.3E-29 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMJ96_CH01675 9ab76a3b55e42b7c854de46ba5d033de 318 PRINTS PR00101 Aspartate carbamoyltransferase signature 136 153 5.3E-29 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMJ96_CH01675 9ab76a3b55e42b7c854de46ba5d033de 318 PRINTS PR00101 Aspartate carbamoyltransferase signature 285 299 5.3E-29 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMJ96_CH01675 9ab76a3b55e42b7c854de46ba5d033de 318 PRINTS PR00101 Aspartate carbamoyltransferase signature 261 266 5.3E-29 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMJ96_CH01675 9ab76a3b55e42b7c854de46ba5d033de 318 PRINTS PR00101 Aspartate carbamoyltransferase signature 81 90 5.3E-29 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMJ96_CH01675 9ab76a3b55e42b7c854de46ba5d033de 318 PRINTS PR00101 Aspartate carbamoyltransferase signature 220 229 5.3E-29 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMJ96_CH01675 9ab76a3b55e42b7c854de46ba5d033de 318 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 137 148 4.7E-21 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMJ96_CH01675 9ab76a3b55e42b7c854de46ba5d033de 318 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 53 72 4.7E-21 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMJ96_CH01675 9ab76a3b55e42b7c854de46ba5d033de 318 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 269 292 4.7E-21 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMJ96_CH01675 9ab76a3b55e42b7c854de46ba5d033de 318 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 257 266 4.7E-21 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AMJ96_CH01675 9ab76a3b55e42b7c854de46ba5d033de 318 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 7 149 6.6E-41 T 12-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AMJ96_CH01675 9ab76a3b55e42b7c854de46ba5d033de 318 Gene3D G3DSA:3.40.50.1370 12 299 4.9E-94 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMJ96_CH01675 9ab76a3b55e42b7c854de46ba5d033de 318 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 6 306 39.67 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMJ96_CH01675 9ab76a3b55e42b7c854de46ba5d033de 318 Gene3D G3DSA:3.40.50.1370 137 283 4.9E-94 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 AMJ96_CH03877 4342c66927eec2df284a131525171d55 272 SMART SM00971 22 124 6.0E-32 T 12-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 AMJ96_CH03877 4342c66927eec2df284a131525171d55 272 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 204 238 3.6E-7 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH03877 4342c66927eec2df284a131525171d55 272 Pfam PF06426 Serine acetyltransferase, N-terminal 22 124 3.9E-26 T 12-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 AMJ96_CH03877 4342c66927eec2df284a131525171d55 272 Gene3D G3DSA:2.160.10.10 154 271 3.7E-35 T 12-10-2018 AMJ96_CH03877 4342c66927eec2df284a131525171d55 272 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 92 252 1.2E-67 T 12-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 AMJ96_CH03877 4342c66927eec2df284a131525171d55 272 Gene3D G3DSA:1.10.3130.10 4 152 1.4E-40 T 12-10-2018 AMJ96_CH03877 4342c66927eec2df284a131525171d55 272 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 213 241 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMJ96_CH03877 4342c66927eec2df284a131525171d55 272 SUPERFAMILY SSF51161 87 262 7.49E-54 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily AMJ96_CH03877 4342c66927eec2df284a131525171d55 272 PIRSF PIRSF000441 86 271 3.6E-60 T 12-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 AMJ96_CH03972 16812eb219b492da801f21636d724096 693 Gene3D G3DSA:3.20.70.20 139 674 3.8E-205 T 12-10-2018 AMJ96_CH03972 16812eb219b492da801f21636d724096 693 Pfam PF02867 Ribonucleotide reductase, barrel domain 155 672 1.0E-144 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMJ96_CH03972 16812eb219b492da801f21636d724096 693 SUPERFAMILY SSF51998 154 677 4.27E-186 T 12-10-2018 AMJ96_CH03972 16812eb219b492da801f21636d724096 693 TIGRFAM TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit 1 693 0.0 T 12-10-2018 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMJ96_CH03972 16812eb219b492da801f21636d724096 693 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 78 150 4.0E-12 T 12-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMJ96_CH03972 16812eb219b492da801f21636d724096 693 SUPERFAMILY SSF48168 1 153 2.09E-58 T 12-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMJ96_CH03972 16812eb219b492da801f21636d724096 693 PRINTS PR01183 Ribonucleotide reductase large chain signature 361 372 5.3E-32 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMJ96_CH03972 16812eb219b492da801f21636d724096 693 PRINTS PR01183 Ribonucleotide reductase large chain signature 405 428 5.3E-32 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMJ96_CH03972 16812eb219b492da801f21636d724096 693 PRINTS PR01183 Ribonucleotide reductase large chain signature 472 495 5.3E-32 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMJ96_CH03972 16812eb219b492da801f21636d724096 693 PRINTS PR01183 Ribonucleotide reductase large chain signature 556 583 5.3E-32 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMJ96_CH03972 16812eb219b492da801f21636d724096 693 PRINTS PR01183 Ribonucleotide reductase large chain signature 230 249 5.3E-32 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMJ96_CH03972 16812eb219b492da801f21636d724096 693 PRINTS PR01183 Ribonucleotide reductase large chain signature 444 466 5.3E-32 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMJ96_CH03972 16812eb219b492da801f21636d724096 693 Gene3D G3DSA:1.10.1650.20 273 325 3.8E-205 T 12-10-2018 AMJ96_CH03972 16812eb219b492da801f21636d724096 693 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 545 567 - T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMJ96_CH03972 16812eb219b492da801f21636d724096 693 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 82 675 4.9E-159 T 12-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMJ96_CH03972 16812eb219b492da801f21636d724096 693 Pfam PF08343 Ribonucleotide reductase N-terminal 1 76 1.6E-28 T 12-10-2018 IPR013554 Ribonucleotide reductase N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMJ96_CH03842 2e98736c65cb66aeacf62b8283b8e3e9 420 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 10 416 51.435 T 12-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 AMJ96_CH03842 2e98736c65cb66aeacf62b8283b8e3e9 420 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 19 38 - T 12-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 AMJ96_CH03842 2e98736c65cb66aeacf62b8283b8e3e9 420 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 14 390 1.1E-153 T 12-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 AMJ96_CH03842 2e98736c65cb66aeacf62b8283b8e3e9 420 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 204 214 - T 12-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 AMJ96_CH03842 2e98736c65cb66aeacf62b8283b8e3e9 420 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 106 114 - T 12-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 AMJ96_CH03842 2e98736c65cb66aeacf62b8283b8e3e9 420 SUPERFAMILY SSF51161 302 399 6.79E-15 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily AMJ96_CH03842 2e98736c65cb66aeacf62b8283b8e3e9 420 Pfam PF00483 Nucleotidyl transferase 16 283 1.1E-62 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AMJ96_CH03842 2e98736c65cb66aeacf62b8283b8e3e9 420 SUPERFAMILY SSF53448 15 370 1.03E-73 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03842 2e98736c65cb66aeacf62b8283b8e3e9 420 Gene3D G3DSA:3.90.550.10 1 293 7.1E-95 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03842 2e98736c65cb66aeacf62b8283b8e3e9 420 Gene3D G3DSA:2.160.10.10 294 420 1.0E-32 T 12-10-2018 AMJ96_CH01008 6d542801d8a4d3b16a9d7407ce61a67e 267 Pfam PF12686 Protein of unknown function (DUF3800) 6 214 1.0E-8 T 12-10-2018 IPR024524 Protein of unknown function DUF3800 AMJ96_CH00115 3ec01c59465e3d7069539b69ff7f65ec 89 SMART SM01387 8 88 9.2E-53 T 12-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH00115 3ec01c59465e3d7069539b69ff7f65ec 89 SUPERFAMILY SSF47060 3 89 8.54E-36 T 12-10-2018 IPR009068 S15/NS1, RNA-binding AMJ96_CH00115 3ec01c59465e3d7069539b69ff7f65ec 89 Pfam PF00312 Ribosomal protein S15 8 88 1.2E-37 T 12-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH00115 3ec01c59465e3d7069539b69ff7f65ec 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 89 5.1E-39 T 12-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH00115 3ec01c59465e3d7069539b69ff7f65ec 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 2.0E-35 T 12-10-2018 AMJ96_CH00115 3ec01c59465e3d7069539b69ff7f65ec 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 22.273 T 12-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH00115 3ec01c59465e3d7069539b69ff7f65ec 89 Gene3D G3DSA:1.10.287.10 1 89 1.3E-35 T 12-10-2018 AMJ96_CH00115 3ec01c59465e3d7069539b69ff7f65ec 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 12-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_PB00019 e99d8fd163df1600d599569c7581084f 155 Pfam PF08937 MTH538 TIR-like domain (DUF1863) 31 131 2.8E-21 T 12-10-2018 IPR015032 MTH538 TIR-like domain AMJ96_PB00019 e99d8fd163df1600d599569c7581084f 155 SUPERFAMILY SSF52200 32 138 3.66E-13 T 12-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily AMJ96_PB00019 e99d8fd163df1600d599569c7581084f 155 Gene3D G3DSA:3.40.50.10140 14 142 9.8E-13 T 12-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily AMJ96_PC00071 47bba7cdd1960a422e8f02446f7cce1c 305 Gene3D G3DSA:3.40.190.10 98 287 1.3E-35 T 12-10-2018 AMJ96_PC00071 47bba7cdd1960a422e8f02446f7cce1c 305 TIGRFAM TIGR02424 TF_pcaQ: pca operon transcription factor PcaQ 4 302 6.5E-129 T 12-10-2018 IPR012787 Pca transcription factor PcaQ GO:0003677|GO:0019619|GO:0045893 AMJ96_PC00071 47bba7cdd1960a422e8f02446f7cce1c 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.0E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00071 47bba7cdd1960a422e8f02446f7cce1c 305 Gene3D G3DSA:3.40.190.10 171 273 1.3E-35 T 12-10-2018 AMJ96_PC00071 47bba7cdd1960a422e8f02446f7cce1c 305 SUPERFAMILY SSF53850 96 304 7.6E-27 T 12-10-2018 AMJ96_PC00071 47bba7cdd1960a422e8f02446f7cce1c 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 4.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00071 47bba7cdd1960a422e8f02446f7cce1c 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 4.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00071 47bba7cdd1960a422e8f02446f7cce1c 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 4.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00071 47bba7cdd1960a422e8f02446f7cce1c 305 Gene3D G3DSA:1.10.10.10 5 93 3.3E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00071 47bba7cdd1960a422e8f02446f7cce1c 305 Pfam PF03466 LysR substrate binding domain 97 301 3.1E-25 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PC00071 47bba7cdd1960a422e8f02446f7cce1c 305 SUPERFAMILY SSF46785 5 115 2.73E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02999 96c5a321c901f8a9ca0d57166c77084c 163 Pfam PF05981 CreA protein 27 153 4.4E-46 T 12-10-2018 IPR010292 Uncharacterised protein family CreA AMJ96_CH02999 96c5a321c901f8a9ca0d57166c77084c 163 PIRSF PIRSF003174 1 163 2.0E-49 T 12-10-2018 IPR010292 Uncharacterised protein family CreA AMJ96_PD00330 669f339156096e69e9cec1b2f0ef1e69 314 Pfam PF00701 Dihydrodipicolinate synthetase family 10 294 4.2E-36 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PD00330 669f339156096e69e9cec1b2f0ef1e69 314 SUPERFAMILY SSF51569 5 297 3.14E-59 T 12-10-2018 AMJ96_PD00330 669f339156096e69e9cec1b2f0ef1e69 314 Gene3D G3DSA:3.20.20.70 2 310 2.4E-76 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_PD00330 669f339156096e69e9cec1b2f0ef1e69 314 PIRSF PIRSF001365 5 305 4.9E-51 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PD00330 669f339156096e69e9cec1b2f0ef1e69 314 SMART SM01130 9 298 8.6E-47 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PD00534 af4937a3be8963fca0a4739083be64d7 551 PIRSF PIRSF036565 1 550 1.6E-125 T 12-10-2018 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme GO:0016831 AMJ96_PD00534 af4937a3be8963fca0a4739083be64d7 551 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 181 4.7E-30 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMJ96_PD00534 af4937a3be8963fca0a4739083be64d7 551 Gene3D G3DSA:3.40.50.1220 193 347 1.8E-34 T 12-10-2018 AMJ96_PD00534 af4937a3be8963fca0a4739083be64d7 551 SUPERFAMILY SSF52467 197 335 3.27E-23 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMJ96_PD00534 af4937a3be8963fca0a4739083be64d7 551 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 202 303 8.5E-18 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMJ96_PD00534 af4937a3be8963fca0a4739083be64d7 551 Gene3D G3DSA:3.40.50.970 353 548 6.6E-44 T 12-10-2018 AMJ96_PD00534 af4937a3be8963fca0a4739083be64d7 551 SUPERFAMILY SSF52518 360 540 1.29E-38 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_PD00534 af4937a3be8963fca0a4739083be64d7 551 Gene3D G3DSA:3.40.50.970 1 187 1.7E-52 T 12-10-2018 AMJ96_PD00534 af4937a3be8963fca0a4739083be64d7 551 SUPERFAMILY SSF52518 4 182 3.72E-31 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_PD00534 af4937a3be8963fca0a4739083be64d7 551 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 395 535 4.1E-24 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMJ96_CH00701 0489566145353fa2c393454cd835ff78 262 Pfam PF00460 Flagella basal body rod protein 5 34 8.1E-13 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AMJ96_CH00701 0489566145353fa2c393454cd835ff78 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 143 243 9.1E-32 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G AMJ96_CH00701 0489566145353fa2c393454cd835ff78 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 136 2.5E-46 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G AMJ96_CH00701 0489566145353fa2c393454cd835ff78 262 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 10 30 - T 12-10-2018 IPR019776 Flagellar basal body rod protein, conserved site AMJ96_CH00701 0489566145353fa2c393454cd835ff78 262 SUPERFAMILY SSF117143 92 222 3.14E-35 T 12-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like AMJ96_CH00701 0489566145353fa2c393454cd835ff78 262 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 255 4.3E-27 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AMJ96_CH00701 0489566145353fa2c393454cd835ff78 262 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 3 260 1.8E-112 T 12-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 SMART SM00086 392 434 4.8E-6 T 12-10-2018 IPR001610 PAC motif AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 SMART SM00086 525 567 8.8E-4 T 12-10-2018 IPR001610 PAC motif AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 SMART SM00086 659 701 3.3E-5 T 12-10-2018 IPR001610 PAC motif AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 SMART SM00086 792 834 1.1E-6 T 12-10-2018 IPR001610 PAC motif AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 SMART SM00086 925 967 0.0018 T 12-10-2018 IPR001610 PAC motif AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 Gene3D G3DSA:1.10.287.130 967 1054 1.2E-15 T 12-10-2018 AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 SMART SM00091 579 653 300.0 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 SMART SM00091 713 786 1.7 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 SMART SM00091 846 919 0.24 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 SMART SM00091 446 519 0.012 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 SMART SM00091 313 386 7.0 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 Gene3D G3DSA:3.30.450.20 569 698 4.6E-22 T 12-10-2018 AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 Gene3D G3DSA:3.30.450.20 836 964 1.5E-24 T 12-10-2018 AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 SUPERFAMILY SSF55874 1066 1205 2.23E-32 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 SUPERFAMILY SSF55785 698 831 1.69E-20 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 SUPERFAMILY SSF55785 431 564 7.15E-21 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 SMART SM00388 989 1059 6.1E-8 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1157 1167 4.0E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1168 1186 4.0E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1192 1205 4.0E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1141 1155 4.0E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1102 1207 1.4E-14 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 SUPERFAMILY SSF55785 300 431 1.4E-19 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 Gene3D G3DSA:3.30.565.10 1059 1211 1.2E-35 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 SUPERFAMILY SSF47384 986 1059 7.26E-7 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 Gene3D G3DSA:3.30.450.20 439 563 1.5E-23 T 12-10-2018 AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 Gene3D G3DSA:3.30.450.20 705 830 4.7E-25 T 12-10-2018 AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 Pfam PF00512 His Kinase A (phospho-acceptor) domain 989 1055 1.3E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 SUPERFAMILY SSF55785 831 964 3.66E-23 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 SUPERFAMILY SSF55785 564 698 3.32E-19 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 SMART SM00387 1101 1208 1.3E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 Pfam PF08447 PAS fold 869 959 1.2E-16 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 Pfam PF08447 PAS fold 635 693 1.6E-16 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 Pfam PF08447 PAS fold 498 560 7.6E-12 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 Pfam PF08447 PAS fold 766 826 3.3E-14 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 Pfam PF08447 PAS fold 364 426 1.9E-13 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 Gene3D G3DSA:3.30.450.20 311 431 2.1E-24 T 12-10-2018 AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 635 708 4.6E-10 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 709 841 3.3E-7 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 310 440 4.5E-9 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 842 974 6.3E-15 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 442 574 7.8E-9 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00314 6352e26b87b5a744eab8684e071012ad 1212 Pfam PF05231 MASE1 14 294 2.4E-69 T 12-10-2018 IPR007895 MASE1 AMJ96_PD00591 ee3ab2563aa95086ff5cecfc7a978e63 477 SUPERFAMILY SSF52467 307 476 1.17E-73 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMJ96_PD00591 ee3ab2563aa95086ff5cecfc7a978e63 477 Gene3D G3DSA:3.40.50.1220 299 477 1.2E-85 T 12-10-2018 AMJ96_PD00591 ee3ab2563aa95086ff5cecfc7a978e63 477 PIRSF PIRSF000204 1 477 1.1E-209 T 12-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 AMJ96_PD00591 ee3ab2563aa95086ff5cecfc7a978e63 477 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 473 6.9E-188 T 12-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AMJ96_PB00335 565d3eb5bcf0214997f41b2c46725de2 280 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_PB00335 565d3eb5bcf0214997f41b2c46725de2 280 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 192 0.0036 T 12-10-2018 AMJ96_PB00335 565d3eb5bcf0214997f41b2c46725de2 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 9.0E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00335 565d3eb5bcf0214997f41b2c46725de2 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 9.0E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00335 565d3eb5bcf0214997f41b2c46725de2 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 9.0E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00335 565d3eb5bcf0214997f41b2c46725de2 280 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 250 1.2E-61 T 12-10-2018 AMJ96_PB00335 565d3eb5bcf0214997f41b2c46725de2 280 SUPERFAMILY SSF51735 5 252 6.29E-77 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PB00335 565d3eb5bcf0214997f41b2c46725de2 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 1.0E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00335 565d3eb5bcf0214997f41b2c46725de2 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.0E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00335 565d3eb5bcf0214997f41b2c46725de2 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.0E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00335 565d3eb5bcf0214997f41b2c46725de2 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 1.0E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00335 565d3eb5bcf0214997f41b2c46725de2 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.0E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00335 565d3eb5bcf0214997f41b2c46725de2 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 1.0E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00335 565d3eb5bcf0214997f41b2c46725de2 280 Gene3D G3DSA:3.40.50.720 1 259 1.4E-78 T 12-10-2018 AMJ96_CH00537 18c3f94aec21575345cf97285332d087 394 TIGRFAM TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase 8 389 3.5E-168 T 12-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 AMJ96_CH00537 18c3f94aec21575345cf97285332d087 394 Gene3D G3DSA:3.90.1150.10 258 394 1.4E-47 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH00537 18c3f94aec21575345cf97285332d087 394 PIRSF PIRSF001434 1 393 5.2E-129 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMJ96_CH00537 18c3f94aec21575345cf97285332d087 394 Hamap MF_02056 O-succinylhomoserine sulfhydrylase [metZ]. 9 390 53.22 T 12-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 AMJ96_CH00537 18c3f94aec21575345cf97285332d087 394 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 9 389 9.3E-132 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMJ96_CH00537 18c3f94aec21575345cf97285332d087 394 Gene3D G3DSA:3.40.640.10 6 257 1.0E-82 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH00537 18c3f94aec21575345cf97285332d087 394 SUPERFAMILY SSF53383 21 391 3.19E-118 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH02510 38a25561dd85bf4070169960493fc76e 260 Pfam PF02654 Cobalamin-5-phosphate synthase 13 254 4.8E-50 T 12-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 AMJ96_CH02510 38a25561dd85bf4070169960493fc76e 260 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 13 256 1.9E-32 T 12-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 AMJ96_CH02510 38a25561dd85bf4070169960493fc76e 260 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 260 45.16 T 12-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 AMJ96_PA00270 5108dda1b3196f309406bbe582321625 550 Gene3D G3DSA:3.50.50.60 442 545 3.9E-9 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PA00270 5108dda1b3196f309406bbe582321625 550 SUPERFAMILY SSF54373 288 439 1.02E-31 T 12-10-2018 AMJ96_PA00270 5108dda1b3196f309406bbe582321625 550 Gene3D G3DSA:3.50.50.60 193 300 9.7E-9 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PA00270 5108dda1b3196f309406bbe582321625 550 Pfam PF05199 GMC oxidoreductase 386 537 5.5E-18 T 12-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 AMJ96_PA00270 5108dda1b3196f309406bbe582321625 550 SUPERFAMILY SSF51905 3 545 5.96E-50 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PA00270 5108dda1b3196f309406bbe582321625 550 Gene3D G3DSA:3.50.50.60 1 170 1.1E-14 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00693 f048d3891475597758783ab6885e082a 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 269 6.1E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00693 f048d3891475597758783ab6885e082a 280 Gene3D G3DSA:1.10.3720.10 3 270 1.6E-62 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00693 f048d3891475597758783ab6885e082a 280 SUPERFAMILY SSF161098 8 280 2.8E-67 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00264 636418c6ae1642f98730b4afa1d6a6d6 340 Pfam PF13377 Periplasmic binding protein-like domain 171 334 1.0E-36 T 12-10-2018 AMJ96_PA00264 636418c6ae1642f98730b4afa1d6a6d6 340 SMART SM00354 1 68 7.2E-25 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00264 636418c6ae1642f98730b4afa1d6a6d6 340 SUPERFAMILY SSF47413 1 56 7.88E-17 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PA00264 636418c6ae1642f98730b4afa1d6a6d6 340 Gene3D G3DSA:1.10.260.40 1 52 2.1E-23 T 12-10-2018 AMJ96_PA00264 636418c6ae1642f98730b4afa1d6a6d6 340 SUPERFAMILY SSF53822 73 337 4.28E-54 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PA00264 636418c6ae1642f98730b4afa1d6a6d6 340 Gene3D G3DSA:3.40.50.2300 161 294 1.4E-62 T 12-10-2018 AMJ96_PA00264 636418c6ae1642f98730b4afa1d6a6d6 340 Gene3D G3DSA:3.40.50.2300 53 310 1.4E-62 T 12-10-2018 AMJ96_PA00264 636418c6ae1642f98730b4afa1d6a6d6 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 1 45 9.6E-18 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH02451 5a1b22e2d1091a9a2ca26ec309b51e9d 124 Gene3D G3DSA:3.30.2020.30 2 98 8.3E-27 T 12-10-2018 IPR038492 GBBH-like, N-terminal domain superfamily Reactome: R-HSA-71262 AMJ96_CH02451 5a1b22e2d1091a9a2ca26ec309b51e9d 124 Pfam PF06155 Protein of unknown function (DUF971) 10 93 1.8E-27 T 12-10-2018 IPR010376 Gamma-butyrobetaine hydroxylase-like, N-terminal Reactome: R-HSA-71262 AMJ96_CH02943 169c36746222905c66ee82b6beaeb5ff 171 SUPERFAMILY SSF88946 8 96 5.1E-13 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH02943 169c36746222905c66ee82b6beaeb5ff 171 SUPERFAMILY SSF88659 98 160 3.71E-17 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_CH02943 169c36746222905c66ee82b6beaeb5ff 171 Pfam PF04542 Sigma-70 region 2 15 78 1.0E-8 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH02943 169c36746222905c66ee82b6beaeb5ff 171 Gene3D G3DSA:1.10.10.10 82 164 4.0E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02943 169c36746222905c66ee82b6beaeb5ff 171 Gene3D G3DSA:1.10.1740.10 2 69 4.3E-16 T 12-10-2018 AMJ96_CH02943 169c36746222905c66ee82b6beaeb5ff 171 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 9 159 8.7E-21 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMJ96_CH02943 169c36746222905c66ee82b6beaeb5ff 171 Pfam PF08281 Sigma-70, region 4 103 155 1.0E-15 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_CH01788 9c62e409708a69d8aeaf9b1bdc7b8726 330 Gene3D G3DSA:2.40.440.10 131 328 1.4E-43 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH01788 9c62e409708a69d8aeaf9b1bdc7b8726 330 Pfam PF01471 Putative peptidoglycan binding domain 48 100 1.5E-7 T 12-10-2018 IPR002477 Peptidoglycan binding-like AMJ96_CH01788 9c62e409708a69d8aeaf9b1bdc7b8726 330 Pfam PF03734 L,D-transpeptidase catalytic domain 190 319 1.5E-18 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMJ96_CH01788 9c62e409708a69d8aeaf9b1bdc7b8726 330 Gene3D G3DSA:1.10.101.10 40 107 1.0E-5 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMJ96_CH01788 9c62e409708a69d8aeaf9b1bdc7b8726 330 SUPERFAMILY SSF141523 190 320 6.8E-28 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH01788 9c62e409708a69d8aeaf9b1bdc7b8726 330 SUPERFAMILY SSF47090 41 103 7.06E-11 T 12-10-2018 IPR036365 PGBD-like superfamily AMJ96_CH02549 ddf3f2ceaba767847fdf9baaa3326c67 326 Pfam PF03186 CobD/Cbib protein 10 305 3.3E-92 T 12-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 AMJ96_CH02549 ddf3f2ceaba767847fdf9baaa3326c67 326 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 6 288 7.8E-61 T 12-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 AMJ96_CH02549 ddf3f2ceaba767847fdf9baaa3326c67 326 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 326 95.406 T 12-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 AMJ96_CH01932 7197c7fe7a538f2ca06ba1381d8f8e7b 145 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 145 70.019 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMJ96_CH01932 7197c7fe7a538f2ca06ba1381d8f8e7b 145 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 5 143 4.1E-61 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMJ96_CH01932 7197c7fe7a538f2ca06ba1381d8f8e7b 145 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 5 142 5.0E-64 T 12-10-2018 AMJ96_CH01932 7197c7fe7a538f2ca06ba1381d8f8e7b 145 SUPERFAMILY SSF52304 4 143 1.44E-60 T 12-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMJ96_CH01932 7197c7fe7a538f2ca06ba1381d8f8e7b 145 Pfam PF01220 Dehydroquinase class II 5 140 8.8E-62 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMJ96_CH01932 7197c7fe7a538f2ca06ba1381d8f8e7b 145 ProSitePatterns PS01029 Dehydroquinase class II signature. 8 25 - T 12-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMJ96_CH01932 7197c7fe7a538f2ca06ba1381d8f8e7b 145 Gene3D G3DSA:3.40.50.9100 1 145 5.9E-65 T 12-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMJ96_CH01932 7197c7fe7a538f2ca06ba1381d8f8e7b 145 PIRSF PIRSF001399 1 145 1.4E-64 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMJ96_CH00184 b19c12f2883857620d0e8b1381c61097 382 SUPERFAMILY SSF161098 176 362 2.88E-18 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00184 b19c12f2883857620d0e8b1381c61097 382 Gene3D G3DSA:1.10.3720.10 167 379 1.1E-16 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00184 b19c12f2883857620d0e8b1381c61097 382 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 198 379 1.1E-27 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03044 7c8bc77316a5f40bc7481c9259546cef 549 SMART SM00382 31 239 1.9E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03044 7c8bc77316a5f40bc7481c9259546cef 549 SMART SM00382 342 512 8.0E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03044 7c8bc77316a5f40bc7481c9259546cef 549 SUPERFAMILY SSF52540 9 236 1.2E-50 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03044 7c8bc77316a5f40bc7481c9259546cef 549 Pfam PF00005 ABC transporter 334 467 4.1E-24 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03044 7c8bc77316a5f40bc7481c9259546cef 549 Gene3D G3DSA:3.40.50.300 280 548 5.3E-72 T 12-10-2018 AMJ96_CH03044 7c8bc77316a5f40bc7481c9259546cef 549 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 4 547 3.0E-276 T 12-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 AMJ96_CH03044 7c8bc77316a5f40bc7481c9259546cef 549 Gene3D G3DSA:3.40.50.300 3 279 8.8E-75 T 12-10-2018 AMJ96_CH03044 7c8bc77316a5f40bc7481c9259546cef 549 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03044 7c8bc77316a5f40bc7481c9259546cef 549 SUPERFAMILY SSF52540 304 520 5.06E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03044 7c8bc77316a5f40bc7481c9259546cef 549 Pfam PF00005 ABC transporter 22 185 3.4E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03044 7c8bc77316a5f40bc7481c9259546cef 549 Pfam PF12848 ABC transporter 224 298 4.9E-15 T 12-10-2018 IPR032781 ABC-transporter extension domain AMJ96_CH04117 732f5bfd3bad8854a93702ba79003fdb 134 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 5 84 6.1E-24 T 12-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04117 732f5bfd3bad8854a93702ba79003fdb 134 Gene3D G3DSA:2.60.15.10 1 127 1.2E-33 T 12-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04117 732f5bfd3bad8854a93702ba79003fdb 134 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 90 4.0E-33 T 12-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04117 732f5bfd3bad8854a93702ba79003fdb 134 SUPERFAMILY SSF51344 4 85 1.2E-21 T 12-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04117 732f5bfd3bad8854a93702ba79003fdb 134 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 5 120 5.8E-28 T 12-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04117 732f5bfd3bad8854a93702ba79003fdb 134 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 134 17.921 T 12-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH03961 a4cdf9266076c3215e496c6943daff0d 748 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 366 381 - T 12-10-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 AMJ96_CH03961 a4cdf9266076c3215e496c6943daff0d 748 Gene3D G3DSA:2.60.40.10 155 259 1.8E-9 T 12-10-2018 IPR013783 Immunoglobulin-like fold AMJ96_CH03961 a4cdf9266076c3215e496c6943daff0d 748 PRINTS PR00132 Glycosyl hydrolase family 2 signature 366 381 3.4E-8 T 12-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 AMJ96_CH03961 a4cdf9266076c3215e496c6943daff0d 748 PRINTS PR00132 Glycosyl hydrolase family 2 signature 270 284 3.4E-8 T 12-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 AMJ96_CH03961 a4cdf9266076c3215e496c6943daff0d 748 PRINTS PR00132 Glycosyl hydrolase family 2 signature 302 320 3.4E-8 T 12-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 AMJ96_CH03961 a4cdf9266076c3215e496c6943daff0d 748 Pfam PF00703 Glycosyl hydrolases family 2 156 259 5.8E-10 T 12-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 AMJ96_CH03961 a4cdf9266076c3215e496c6943daff0d 748 Gene3D G3DSA:2.60.40.10 650 711 3.0E-5 T 12-10-2018 IPR013783 Immunoglobulin-like fold AMJ96_CH03961 a4cdf9266076c3215e496c6943daff0d 748 SUPERFAMILY SSF49785 1 153 1.98E-32 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily AMJ96_CH03961 a4cdf9266076c3215e496c6943daff0d 748 Gene3D G3DSA:2.60.120.260 1 153 9.6E-31 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily AMJ96_CH03961 a4cdf9266076c3215e496c6943daff0d 748 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 47 150 2.6E-11 T 12-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AMJ96_CH03961 a4cdf9266076c3215e496c6943daff0d 748 SUPERFAMILY SSF51445 266 547 1.77E-59 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH03961 a4cdf9266076c3215e496c6943daff0d 748 SUPERFAMILY SSF49303 166 259 1.7E-11 T 12-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily AMJ96_CH03961 a4cdf9266076c3215e496c6943daff0d 748 Gene3D G3DSA:3.20.20.80 262 550 2.9E-58 T 12-10-2018 AMJ96_CH03961 a4cdf9266076c3215e496c6943daff0d 748 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 264 541 4.2E-29 T 12-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 AMJ96_CH03961 a4cdf9266076c3215e496c6943daff0d 748 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 312 337 - T 12-10-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 AMJ96_CH03845 f6ce297fe7ef6b27e981c6c2a5f4a818 658 SUPERFAMILY SSF81296 8 127 9.8E-34 T 12-10-2018 IPR014756 Immunoglobulin E-set AMJ96_CH03845 f6ce297fe7ef6b27e981c6c2a5f4a818 658 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 10 95 4.2E-13 T 12-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 AMJ96_CH03845 f6ce297fe7ef6b27e981c6c2a5f4a818 658 Gene3D G3DSA:2.60.40.10 2 126 2.2E-31 T 12-10-2018 IPR013783 Immunoglobulin-like fold AMJ96_CH03845 f6ce297fe7ef6b27e981c6c2a5f4a818 658 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 7 655 9.8E-241 T 12-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 AMJ96_CH03845 f6ce297fe7ef6b27e981c6c2a5f4a818 658 SUPERFAMILY SSF51445 140 554 8.22E-104 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH03845 f6ce297fe7ef6b27e981c6c2a5f4a818 658 SMART SM00642 145 548 1.3E-5 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_CH03845 f6ce297fe7ef6b27e981c6c2a5f4a818 658 Pfam PF00128 Alpha amylase, catalytic domain 177 260 1.2E-7 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_CH03845 f6ce297fe7ef6b27e981c6c2a5f4a818 658 Gene3D G3DSA:2.60.40.1180 562 658 6.1E-6 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta AMJ96_CH03845 f6ce297fe7ef6b27e981c6c2a5f4a818 658 Gene3D G3DSA:3.20.20.80 137 561 2.6E-139 T 12-10-2018 AMJ96_CH03845 f6ce297fe7ef6b27e981c6c2a5f4a818 658 SUPERFAMILY SSF51011 563 656 3.45E-9 T 12-10-2018 AMJ96_PC00004 6c855c5f8df593d056ae19564e099645 179 Gene3D G3DSA:1.10.1740.10 2 78 2.5E-19 T 12-10-2018 AMJ96_PC00004 6c855c5f8df593d056ae19564e099645 179 Pfam PF04542 Sigma-70 region 2 15 76 5.9E-17 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_PC00004 6c855c5f8df593d056ae19564e099645 179 Pfam PF08281 Sigma-70, region 4 103 155 5.0E-13 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_PC00004 6c855c5f8df593d056ae19564e099645 179 SUPERFAMILY SSF88946 14 91 3.69E-20 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_PC00004 6c855c5f8df593d056ae19564e099645 179 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 157 2.7E-26 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMJ96_PC00004 6c855c5f8df593d056ae19564e099645 179 Gene3D G3DSA:1.10.10.10 99 162 1.4E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00004 6c855c5f8df593d056ae19564e099645 179 SUPERFAMILY SSF88659 98 161 4.11E-16 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_CH03054 29ebf10417e054a3ae83627e3b4846e5 232 Pfam PF07015 VirC1 protein 1 186 6.1E-18 T 12-10-2018 IPR009744 VirC1 AMJ96_CH03054 29ebf10417e054a3ae83627e3b4846e5 232 Gene3D G3DSA:3.40.50.300 1 217 1.6E-39 T 12-10-2018 AMJ96_CH03054 29ebf10417e054a3ae83627e3b4846e5 232 SUPERFAMILY SSF52540 1 218 3.78E-33 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03054 29ebf10417e054a3ae83627e3b4846e5 232 PIRSF PIRSF009320 1 228 4.5E-38 T 12-10-2018 AMJ96_CH04099 1b0aa42c54e62e09a33d37382775c952 399 Gene3D G3DSA:3.90.1150.10 13 388 2.5E-145 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH04099 1b0aa42c54e62e09a33d37382775c952 399 Gene3D G3DSA:3.40.640.10 58 308 2.5E-145 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH04099 1b0aa42c54e62e09a33d37382775c952 399 SUPERFAMILY SSF53383 3 398 3.52E-121 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH04099 1b0aa42c54e62e09a33d37382775c952 399 Pfam PF00202 Aminotransferase class-III 16 398 2.6E-122 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH04099 1b0aa42c54e62e09a33d37382775c952 399 PIRSF PIRSF000521 175 399 2.1E-37 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH04099 1b0aa42c54e62e09a33d37382775c952 399 PIRSF PIRSF000521 4 160 1.1E-8 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH04099 1b0aa42c54e62e09a33d37382775c952 399 TIGRFAM TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase 4 398 2.5E-168 T 12-10-2018 IPR010164 Ornithine aminotransferase GO:0004587 KEGG: 00330+2.6.1.13|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMJ96_CH04099 1b0aa42c54e62e09a33d37382775c952 399 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 223 260 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH04277 e5df0f98fcf5634e0b380f9d5f29bf2e 287 SUPERFAMILY SSF88946 17 112 2.09E-35 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH04277 e5df0f98fcf5634e0b380f9d5f29bf2e 287 PIRSF PIRSF000770 4 287 5.5E-35 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH04277 e5df0f98fcf5634e0b380f9d5f29bf2e 287 Gene3D G3DSA:1.20.140.160 129 278 2.0E-20 T 12-10-2018 AMJ96_CH04277 e5df0f98fcf5634e0b380f9d5f29bf2e 287 PRINTS PR00046 Major sigma-70 factor signature 68 81 4.7E-23 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH04277 e5df0f98fcf5634e0b380f9d5f29bf2e 287 PRINTS PR00046 Major sigma-70 factor signature 227 239 4.7E-23 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH04277 e5df0f98fcf5634e0b380f9d5f29bf2e 287 PRINTS PR00046 Major sigma-70 factor signature 92 100 4.7E-23 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH04277 e5df0f98fcf5634e0b380f9d5f29bf2e 287 PRINTS PR00046 Major sigma-70 factor signature 246 261 4.7E-23 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH04277 e5df0f98fcf5634e0b380f9d5f29bf2e 287 PRINTS PR00046 Major sigma-70 factor signature 261 272 4.7E-23 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH04277 e5df0f98fcf5634e0b380f9d5f29bf2e 287 Pfam PF04545 Sigma-70, region 4 223 273 8.6E-18 T 12-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH04277 e5df0f98fcf5634e0b380f9d5f29bf2e 287 SUPERFAMILY SSF88659 185 278 1.83E-19 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_CH04277 e5df0f98fcf5634e0b380f9d5f29bf2e 287 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 246 272 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH04277 e5df0f98fcf5634e0b380f9d5f29bf2e 287 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 68 81 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH04277 e5df0f98fcf5634e0b380f9d5f29bf2e 287 Gene3D G3DSA:1.10.601.10 1 116 2.8E-30 T 12-10-2018 AMJ96_CH04277 e5df0f98fcf5634e0b380f9d5f29bf2e 287 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 40 276 1.0E-31 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMJ96_CH04277 e5df0f98fcf5634e0b380f9d5f29bf2e 287 Pfam PF04542 Sigma-70 region 2 46 113 2.5E-17 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03958 95e538dcffbd80f5a432207ab7fb1985 394 Gene3D G3DSA:2.60.120.620 68 344 2.3E-33 T 12-10-2018 AMJ96_CH03958 95e538dcffbd80f5a432207ab7fb1985 394 SUPERFAMILY SSF51197 82 361 3.39E-45 T 12-10-2018 AMJ96_CH03958 95e538dcffbd80f5a432207ab7fb1985 394 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 67 291 3.0E-35 T 12-10-2018 IPR008775 Phytanoyl-CoA dioxygenase AMJ96_PB00068 48efb8cc3afde88a0dfed5be2dc125b8 814 PRINTS PR00133 Glycosyl hydrolase family 3 signature 33 49 3.4E-33 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMJ96_PB00068 48efb8cc3afde88a0dfed5be2dc125b8 814 PRINTS PR00133 Glycosyl hydrolase family 3 signature 63 82 3.4E-33 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMJ96_PB00068 48efb8cc3afde88a0dfed5be2dc125b8 814 PRINTS PR00133 Glycosyl hydrolase family 3 signature 210 228 3.4E-33 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMJ96_PB00068 48efb8cc3afde88a0dfed5be2dc125b8 814 PRINTS PR00133 Glycosyl hydrolase family 3 signature 109 125 3.4E-33 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMJ96_PB00068 48efb8cc3afde88a0dfed5be2dc125b8 814 PRINTS PR00133 Glycosyl hydrolase family 3 signature 140 156 3.4E-33 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMJ96_PB00068 48efb8cc3afde88a0dfed5be2dc125b8 814 Pfam PF07691 PA14 domain 430 509 3.4E-8 T 12-10-2018 IPR011658 PA14 domain AMJ96_PB00068 48efb8cc3afde88a0dfed5be2dc125b8 814 SMART SM00758 387 533 1.4E-5 T 12-10-2018 IPR011658 PA14 domain AMJ96_PB00068 48efb8cc3afde88a0dfed5be2dc125b8 814 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 52 278 1.1E-55 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMJ96_PB00068 48efb8cc3afde88a0dfed5be2dc125b8 814 Pfam PF14310 Fibronectin type III-like domain 726 795 1.4E-22 T 12-10-2018 IPR026891 Fibronectin type III-like domain AMJ96_PB00068 48efb8cc3afde88a0dfed5be2dc125b8 814 Gene3D G3DSA:2.60.120.260 376 524 7.8E-234 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily AMJ96_PB00068 48efb8cc3afde88a0dfed5be2dc125b8 814 SMART SM01217 726 796 9.3E-31 T 12-10-2018 IPR026891 Fibronectin type III-like domain AMJ96_PB00068 48efb8cc3afde88a0dfed5be2dc125b8 814 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 210 227 - T 12-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 AMJ96_PB00068 48efb8cc3afde88a0dfed5be2dc125b8 814 Gene3D G3DSA:3.40.50.1700 299 625 7.8E-234 T 12-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 AMJ96_PB00068 48efb8cc3afde88a0dfed5be2dc125b8 814 SUPERFAMILY SSF51445 5 312 4.21E-92 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_PB00068 48efb8cc3afde88a0dfed5be2dc125b8 814 Gene3D G3DSA:2.60.40.10 702 813 5.4E-30 T 12-10-2018 IPR013783 Immunoglobulin-like fold AMJ96_PB00068 48efb8cc3afde88a0dfed5be2dc125b8 814 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 314 691 6.8E-62 T 12-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AMJ96_PB00068 48efb8cc3afde88a0dfed5be2dc125b8 814 SUPERFAMILY SSF52279 314 694 1.44E-54 T 12-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 AMJ96_PB00068 48efb8cc3afde88a0dfed5be2dc125b8 814 Gene3D G3DSA:3.20.20.300 6 675 7.8E-234 T 12-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 AMJ96_PA00289 8614e635dbb508f7eecad66f79381c83 345 Pfam PF13377 Periplasmic binding protein-like domain 187 344 4.2E-19 T 12-10-2018 AMJ96_PA00289 8614e635dbb508f7eecad66f79381c83 345 Gene3D G3DSA:3.40.50.2300 67 337 9.2E-55 T 12-10-2018 AMJ96_PA00289 8614e635dbb508f7eecad66f79381c83 345 Gene3D G3DSA:1.10.260.40 3 64 1.4E-10 T 12-10-2018 AMJ96_PA00289 8614e635dbb508f7eecad66f79381c83 345 Gene3D G3DSA:3.40.50.2300 165 342 9.2E-55 T 12-10-2018 AMJ96_PA00289 8614e635dbb508f7eecad66f79381c83 345 SUPERFAMILY SSF53822 63 325 4.28E-44 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PA00289 8614e635dbb508f7eecad66f79381c83 345 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 53 2.6E-7 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00289 8614e635dbb508f7eecad66f79381c83 345 SMART SM00354 6 76 5.2E-9 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00289 8614e635dbb508f7eecad66f79381c83 345 SUPERFAMILY SSF47413 7 64 2.57E-11 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PA00277 88e46ae3a1504de8ad3a44a409969fd9 77 PRINTS PR00976 Ribosomal protein S21 family signature 23 33 7.4E-5 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_PA00277 88e46ae3a1504de8ad3a44a409969fd9 77 PRINTS PR00976 Ribosomal protein S21 family signature 35 45 7.4E-5 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_PA00277 88e46ae3a1504de8ad3a44a409969fd9 77 PRINTS PR00976 Ribosomal protein S21 family signature 11 20 7.4E-5 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_PA00277 88e46ae3a1504de8ad3a44a409969fd9 77 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 55 13.047 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_PA00277 88e46ae3a1504de8ad3a44a409969fd9 77 Pfam PF01165 Ribosomal protein S21 2 55 1.8E-18 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_PA00277 88e46ae3a1504de8ad3a44a409969fd9 77 ProSitePatterns PS01181 Ribosomal protein S21 signature. 11 23 - T 12-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_PA00277 88e46ae3a1504de8ad3a44a409969fd9 77 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 1 56 2.9E-20 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_PA00277 88e46ae3a1504de8ad3a44a409969fd9 77 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 13 53 2.0E-11 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_PA00277 88e46ae3a1504de8ad3a44a409969fd9 77 Gene3D G3DSA:1.20.5.1150 14 52 1.6E-8 T 12-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH03138 7722e8142ad31b450415b0363e15a50d 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 52 5.1E-18 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH03138 7722e8142ad31b450415b0363e15a50d 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 22 33 5.1E-18 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH03138 7722e8142ad31b450415b0363e15a50d 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 6 22 5.1E-18 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH03138 7722e8142ad31b450415b0363e15a50d 155 Gene3D G3DSA:1.10.10.10 2 59 4.0E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03138 7722e8142ad31b450415b0363e15a50d 155 ProSitePatterns PS00519 AsnC-type HTH domain signature. 24 50 - T 12-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AMJ96_CH03138 7722e8142ad31b450415b0363e15a50d 155 SUPERFAMILY SSF54909 66 150 1.02E-15 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH03138 7722e8142ad31b450415b0363e15a50d 155 SUPERFAMILY SSF46785 6 66 1.01E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03138 7722e8142ad31b450415b0363e15a50d 155 Pfam PF13412 Winged helix-turn-helix DNA-binding 6 53 4.2E-21 T 12-10-2018 AMJ96_CH03138 7722e8142ad31b450415b0363e15a50d 155 SMART SM00344 6 115 5.5E-42 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMJ96_CH03138 7722e8142ad31b450415b0363e15a50d 155 Pfam PF01037 Lrp/AsnC ligand binding domain 73 145 6.1E-16 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMJ96_CH03138 7722e8142ad31b450415b0363e15a50d 155 Gene3D G3DSA:3.30.70.920 60 142 4.0E-20 T 12-10-2018 AMJ96_CH03070 8cad931aa22e1cfeedd4e35fb9465406 294 Gene3D G3DSA:3.30.420.40 5 113 1.3E-67 T 12-10-2018 AMJ96_CH03070 8cad931aa22e1cfeedd4e35fb9465406 294 SUPERFAMILY SSF53067 2 110 1.94E-21 T 12-10-2018 AMJ96_CH03070 8cad931aa22e1cfeedd4e35fb9465406 294 SUPERFAMILY SSF53067 114 282 1.3E-43 T 12-10-2018 AMJ96_CH03070 8cad931aa22e1cfeedd4e35fb9465406 294 Gene3D G3DSA:3.30.420.40 114 260 1.3E-67 T 12-10-2018 AMJ96_CH03070 8cad931aa22e1cfeedd4e35fb9465406 294 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 6 282 5.0E-35 T 12-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 AMJ96_CH02575 0eda7d923c91e0c86fe4cae702a83650 368 Pfam PF13533 Biotin-lipoyl like 57 104 1.9E-14 T 12-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMJ96_CH02575 0eda7d923c91e0c86fe4cae702a83650 368 Gene3D G3DSA:1.10.287.470 90 105 9.3E-10 T 12-10-2018 AMJ96_CH02575 0eda7d923c91e0c86fe4cae702a83650 368 Gene3D G3DSA:1.10.287.470 114 183 9.7E-13 T 12-10-2018 AMJ96_CH02575 0eda7d923c91e0c86fe4cae702a83650 368 Gene3D G3DSA:2.40.50.100 56 89 9.3E-10 T 12-10-2018 AMJ96_CH02575 0eda7d923c91e0c86fe4cae702a83650 368 Gene3D G3DSA:2.40.30.170 228 348 4.7E-24 T 12-10-2018 AMJ96_CH02575 0eda7d923c91e0c86fe4cae702a83650 368 SUPERFAMILY SSF111369 191 258 1.03E-6 T 12-10-2018 AMJ96_CH02575 0eda7d923c91e0c86fe4cae702a83650 368 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 158 286 6.0E-15 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMJ96_CH02575 0eda7d923c91e0c86fe4cae702a83650 368 SUPERFAMILY SSF111369 56 108 4.71E-8 T 12-10-2018 AMJ96_CH02575 0eda7d923c91e0c86fe4cae702a83650 368 SUPERFAMILY SSF111369 120 176 6.54E-6 T 12-10-2018 AMJ96_PA00181 e338a468f1d549252f1f4ca6f7bc3ec9 329 SUPERFAMILY SSF52317 11 195 2.12E-31 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_PA00181 e338a468f1d549252f1f4ca6f7bc3ec9 329 Gene3D G3DSA:3.40.50.880 5 201 5.2E-40 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_PA00181 e338a468f1d549252f1f4ca6f7bc3ec9 329 SUPERFAMILY SSF46689 215 264 3.9E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PA00181 e338a468f1d549252f1f4ca6f7bc3ec9 329 SUPERFAMILY SSF46689 269 320 8.06E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PA00181 e338a468f1d549252f1f4ca6f7bc3ec9 329 Gene3D G3DSA:1.10.10.60 213 321 4.7E-28 T 12-10-2018 AMJ96_PA00181 e338a468f1d549252f1f4ca6f7bc3ec9 329 Pfam PF12833 Helix-turn-helix domain 239 318 3.6E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PA00181 e338a468f1d549252f1f4ca6f7bc3ec9 329 SMART SM00342 233 316 2.4E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH04121 23534cc85611f0a7bc803f4e6c1c72ad 509 Gene3D G3DSA:3.40.50.300 94 379 2.7E-127 T 12-10-2018 AMJ96_CH04121 23534cc85611f0a7bc803f4e6c1c72ad 509 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 363 372 - T 12-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_CH04121 23534cc85611f0a7bc803f4e6c1c72ad 509 Gene3D G3DSA:1.20.150.20 380 509 5.9E-54 T 12-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04121 23534cc85611f0a7bc803f4e6c1c72ad 509 SUPERFAMILY SSF52540 96 378 1.49E-97 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04121 23534cc85611f0a7bc803f4e6c1c72ad 509 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 509 51.188 T 12-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04121 23534cc85611f0a7bc803f4e6c1c72ad 509 SUPERFAMILY SSF47917 380 508 6.8E-48 T 12-10-2018 AMJ96_CH04121 23534cc85611f0a7bc803f4e6c1c72ad 509 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 372 1.9E-69 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_CH04121 23534cc85611f0a7bc803f4e6c1c72ad 509 PIRSF PIRSF039088 1 509 2.9E-279 T 12-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04121 23534cc85611f0a7bc803f4e6c1c72ad 509 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 508 1.5E-246 T 12-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04121 23534cc85611f0a7bc803f4e6c1c72ad 509 Gene3D G3DSA:2.40.30.20 1 93 2.0E-41 T 12-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_CH04121 23534cc85611f0a7bc803f4e6c1c72ad 509 SUPERFAMILY SSF50615 10 94 5.49E-31 T 12-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_CH04121 23534cc85611f0a7bc803f4e6c1c72ad 509 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 25 92 1.0E-19 T 12-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_CH04121 23534cc85611f0a7bc803f4e6c1c72ad 509 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 379 504 1.8E-48 T 12-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH01275 69a18e13c36b7f7e5982d1f2cf958462 139 Pfam PF00582 Universal stress protein family 1 134 1.1E-24 T 12-10-2018 IPR006016 UspA AMJ96_CH01275 69a18e13c36b7f7e5982d1f2cf958462 139 SUPERFAMILY SSF52402 1 136 7.62E-25 T 12-10-2018 AMJ96_CH01275 69a18e13c36b7f7e5982d1f2cf958462 139 PRINTS PR01438 Universal stress protein signature 97 109 9.3E-7 T 12-10-2018 IPR006015 Universal stress protein A AMJ96_CH01275 69a18e13c36b7f7e5982d1f2cf958462 139 PRINTS PR01438 Universal stress protein signature 114 136 9.3E-7 T 12-10-2018 IPR006015 Universal stress protein A AMJ96_CH01275 69a18e13c36b7f7e5982d1f2cf958462 139 Gene3D G3DSA:3.40.50.620 1 136 2.1E-27 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_PD00183 201730e695cb8a66ca5aa6c923ae96a5 340 Gene3D G3DSA:3.40.50.180 2 193 1.3E-58 T 12-10-2018 IPR035909 Methylesterase CheB, C-terminal AMJ96_PD00183 201730e695cb8a66ca5aa6c923ae96a5 340 Pfam PF01339 CheB methylesterase 10 183 4.8E-49 T 12-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMJ96_PD00183 201730e695cb8a66ca5aa6c923ae96a5 340 SUPERFAMILY SSF52738 7 191 9.15E-50 T 12-10-2018 IPR035909 Methylesterase CheB, C-terminal AMJ96_PD00183 201730e695cb8a66ca5aa6c923ae96a5 340 PIRSF PIRSF036461 1 340 3.8E-126 T 12-10-2018 IPR011247 Chemotaxis protein-glutamate methylesterase AMJ96_CH04327 71e06eea0f709b50ae1b2fce458a0e11 233 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 15 223 3.5E-64 T 12-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 AMJ96_CH04327 71e06eea0f709b50ae1b2fce458a0e11 233 Gene3D G3DSA:1.10.3720.10 3 227 3.9E-56 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH04327 71e06eea0f709b50ae1b2fce458a0e11 233 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 29 230 2.8E-21 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH04327 71e06eea0f709b50ae1b2fce458a0e11 233 SUPERFAMILY SSF161098 9 222 2.49E-48 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00422 37abaf8239ea0eb9670d824c974bf9ee 271 Gene3D G3DSA:3.40.50.300 1 254 1.0E-66 T 12-10-2018 AMJ96_PC00422 37abaf8239ea0eb9670d824c974bf9ee 271 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 225 4.5E-20 T 12-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AMJ96_PC00422 37abaf8239ea0eb9670d824c974bf9ee 271 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 3 265 1.5E-103 T 12-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 AMJ96_PC00422 37abaf8239ea0eb9670d824c974bf9ee 271 SUPERFAMILY SSF52540 1 251 3.45E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00422 37abaf8239ea0eb9670d824c974bf9ee 271 PIRSF PIRSF003092 1 271 2.0E-86 T 12-10-2018 IPR025501 ATP binding protein MinD AMJ96_CH04326 107fc0b5b097d126c6bbc301a04e3828 263 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 40 256 1.7E-61 T 12-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 AMJ96_CH04326 107fc0b5b097d126c6bbc301a04e3828 263 PIRSF PIRSF004846 1 263 1.0E-66 T 12-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 AMJ96_CH04326 107fc0b5b097d126c6bbc301a04e3828 263 Pfam PF13531 Bacterial extracellular solute-binding protein 35 259 6.3E-46 T 12-10-2018 AMJ96_CH04326 107fc0b5b097d126c6bbc301a04e3828 263 Gene3D G3DSA:3.40.190.10 113 223 2.5E-76 T 12-10-2018 AMJ96_CH04326 107fc0b5b097d126c6bbc301a04e3828 263 Gene3D G3DSA:3.40.190.10 36 259 2.5E-76 T 12-10-2018 AMJ96_CH04326 107fc0b5b097d126c6bbc301a04e3828 263 SUPERFAMILY SSF53850 33 260 3.72E-65 T 12-10-2018 AMJ96_PD00190 a69ee613500a3c8370404354dc5f918c 326 SUPERFAMILY SSF49503 107 274 5.95E-49 T 12-10-2018 IPR008972 Cupredoxin AMJ96_PD00190 a69ee613500a3c8370404354dc5f918c 326 Gene3D G3DSA:2.60.40.2600 107 326 6.0E-75 T 12-10-2018 AMJ96_PD00190 a69ee613500a3c8370404354dc5f918c 326 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 132 210 1.0E-20 T 12-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00190 a69ee613500a3c8370404354dc5f918c 326 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 25 223 7.3E-50 T 12-10-2018 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00190 a69ee613500a3c8370404354dc5f918c 326 Pfam PF00034 Cytochrome c 237 324 9.5E-9 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00190 a69ee613500a3c8370404354dc5f918c 326 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 158 206 - T 12-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00190 a69ee613500a3c8370404354dc5f918c 326 Gene3D G3DSA:1.10.287.90 19 101 3.0E-5 T 12-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00190 a69ee613500a3c8370404354dc5f918c 326 SUPERFAMILY SSF46626 235 325 3.81E-16 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_PD00452 e09fe3104c637a28f1a949666d6a2e6e 425 Gene3D G3DSA:3.40.980.20 247 425 3.0E-53 T 12-10-2018 AMJ96_PD00452 e09fe3104c637a28f1a949666d6a2e6e 425 Gene3D G3DSA:3.40.50.10840 3 243 3.3E-76 T 12-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily AMJ96_PD00452 e09fe3104c637a28f1a949666d6a2e6e 425 SUPERFAMILY SSF142764 5 424 2.62E-118 T 12-10-2018 AMJ96_PD00452 e09fe3104c637a28f1a949666d6a2e6e 425 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 259 417 1.3E-41 T 12-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain AMJ96_PD00452 e09fe3104c637a28f1a949666d6a2e6e 425 Pfam PF07005 Putative sugar-binding N-terminal domain 6 228 2.9E-62 T 12-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain AMJ96_CH04287 695df28564fd7e9b464e32ba11e0f6f5 343 SUPERFAMILY SSF53697 7 341 1.21E-63 T 12-10-2018 AMJ96_CH04287 695df28564fd7e9b464e32ba11e0f6f5 343 Pfam PF01380 SIS domain 47 163 7.9E-16 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMJ96_CH04287 695df28564fd7e9b464e32ba11e0f6f5 343 Pfam PF01380 SIS domain 201 292 3.9E-9 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMJ96_CH04287 695df28564fd7e9b464e32ba11e0f6f5 343 Gene3D G3DSA:3.40.50.10490 1 192 3.6E-44 T 12-10-2018 AMJ96_CH04287 695df28564fd7e9b464e32ba11e0f6f5 343 Gene3D G3DSA:3.40.50.10490 193 328 5.1E-32 T 12-10-2018 AMJ96_PD00152 3cd10050fde625a593d4c008739c1eeb 330 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 236 322 3.6E-28 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PD00152 3cd10050fde625a593d4c008739c1eeb 330 SUPERFAMILY SSF52540 6 256 3.99E-74 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00152 3cd10050fde625a593d4c008739c1eeb 330 Pfam PF00005 ABC transporter 33 184 7.3E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00152 3cd10050fde625a593d4c008739c1eeb 330 Gene3D G3DSA:3.40.50.300 4 329 1.9E-100 T 12-10-2018 AMJ96_PD00152 3cd10050fde625a593d4c008739c1eeb 330 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00152 3cd10050fde625a593d4c008739c1eeb 330 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 237 303 3.8E-19 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PD00152 3cd10050fde625a593d4c008739c1eeb 330 SMART SM00382 42 234 1.2E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00643 e624a9034effbc6d89e7c5c016be1e4e 342 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 245 336 1.4E-26 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_CH00643 e624a9034effbc6d89e7c5c016be1e4e 342 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 247 317 1.3E-20 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_CH00643 e624a9034effbc6d89e7c5c016be1e4e 342 SMART SM00382 40 253 6.2E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00643 e624a9034effbc6d89e7c5c016be1e4e 342 Gene3D G3DSA:3.40.50.300 8 342 8.0E-97 T 12-10-2018 AMJ96_CH00643 e624a9034effbc6d89e7c5c016be1e4e 342 ProSitePatterns PS00211 ABC transporters family signature. 168 182 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00643 e624a9034effbc6d89e7c5c016be1e4e 342 SUPERFAMILY SSF52540 11 265 2.0E-67 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00643 e624a9034effbc6d89e7c5c016be1e4e 342 Pfam PF00005 ABC transporter 32 195 1.3E-24 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02498 f787e24f7a2a8683884594c2a6866dae 227 Pfam PF08713 DNA alkylation repair enzyme 12 217 5.9E-35 T 12-10-2018 IPR014825 DNA alkylation repair enzyme AMJ96_CH02498 f787e24f7a2a8683884594c2a6866dae 227 SUPERFAMILY SSF48371 10 193 4.39E-42 T 12-10-2018 IPR016024 Armadillo-type fold AMJ96_CH02498 f787e24f7a2a8683884594c2a6866dae 227 Gene3D G3DSA:1.25.10.90 8 218 3.1E-19 T 12-10-2018 AMJ96_PB00395 0d5ca941353f7cf89dd6afc4ea2c8be3 195 Gene3D G3DSA:3.40.630.30 5 110 1.7E-6 T 12-10-2018 AMJ96_PB00395 0d5ca941353f7cf89dd6afc4ea2c8be3 195 Pfam PF02474 Nodulation protein A (NodA) 3 195 3.0E-94 T 12-10-2018 IPR003484 N-acyltransferase NodA GO:0005829|GO:0009877|GO:0016746 AMJ96_PB00395 0d5ca941353f7cf89dd6afc4ea2c8be3 195 Hamap MF_00084 Nodulation protein A [nodA]. 1 195 56.022 T 12-10-2018 IPR003484 N-acyltransferase NodA GO:0005829|GO:0009877|GO:0016746 AMJ96_PB00395 0d5ca941353f7cf89dd6afc4ea2c8be3 195 TIGRFAM TIGR04245 nodulat_NodA: N-acyltransferase NodA 4 195 2.3E-98 T 12-10-2018 IPR003484 N-acyltransferase NodA GO:0005829|GO:0009877|GO:0016746 AMJ96_PB00395 0d5ca941353f7cf89dd6afc4ea2c8be3 195 ProSitePatterns PS01349 Nodulation protein nodA signature. 46 54 - T 12-10-2018 IPR020567 Nodulation protein A, NodA, conserved site GO:0016746 AMJ96_CH00627 f0d5b10fa353b817b5f43d1ad351d17b 281 PRINTS PR01543 Arylamine N-acetyltransferase signature 34 57 2.6E-5 T 12-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 AMJ96_CH00627 f0d5b10fa353b817b5f43d1ad351d17b 281 PRINTS PR01543 Arylamine N-acetyltransferase signature 82 104 2.6E-5 T 12-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 AMJ96_CH00627 f0d5b10fa353b817b5f43d1ad351d17b 281 PRINTS PR01543 Arylamine N-acetyltransferase signature 58 81 2.6E-5 T 12-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 AMJ96_CH00627 f0d5b10fa353b817b5f43d1ad351d17b 281 Gene3D G3DSA:2.40.128.150 98 190 4.7E-58 T 12-10-2018 AMJ96_CH00627 f0d5b10fa353b817b5f43d1ad351d17b 281 Gene3D G3DSA:3.30.2140.10 18 261 4.7E-58 T 12-10-2018 AMJ96_CH00627 f0d5b10fa353b817b5f43d1ad351d17b 281 SUPERFAMILY SSF54001 11 267 3.92E-56 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMJ96_CH00627 f0d5b10fa353b817b5f43d1ad351d17b 281 Pfam PF00797 N-acetyltransferase 34 263 3.3E-38 T 12-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 AMJ96_CH01427 0e1c68fc38a50c8290a1c5606fcd37ec 193 Gene3D G3DSA:3.40.50.1010 1 167 1.5E-52 T 12-10-2018 AMJ96_CH01427 0e1c68fc38a50c8290a1c5606fcd37ec 193 Pfam PF01936 NYN domain 7 164 4.0E-40 T 12-10-2018 IPR021139 NYN domain, limkain-b1-type AMJ96_CH00978 7442511fc4a6fee4af2fef2a6c7c5193 228 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 8 216 1.8E-53 T 12-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AMJ96_CH00978 7442511fc4a6fee4af2fef2a6c7c5193 228 Pfam PF02660 Glycerol-3-phosphate acyltransferase 13 207 1.3E-48 T 12-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AMJ96_CH00978 7442511fc4a6fee4af2fef2a6c7c5193 228 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 9 216 19.544 T 12-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AMJ96_CH00978 7442511fc4a6fee4af2fef2a6c7c5193 228 SMART SM01207 12 208 4.9E-77 T 12-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AMJ96_PD00380 5271abd69711c4434ee1a1db48259660 406 SUPERFAMILY SSF53474 150 322 2.55E-11 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PD00380 5271abd69711c4434ee1a1db48259660 406 Pfam PF05990 Alpha/beta hydrolase of unknown function (DUF900) 153 362 1.9E-62 T 12-10-2018 IPR010297 Protein of unknown function DUF900, hydrolase-like AMJ96_PD00380 5271abd69711c4434ee1a1db48259660 406 Gene3D G3DSA:3.40.50.1820 145 344 2.8E-8 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PD00380 5271abd69711c4434ee1a1db48259660 406 PIRSF PIRSF033909 29 383 2.7E-86 T 12-10-2018 IPR014586 Uncharacterised conserved protein UCP033909 AMJ96_CH00119 f9c8b827e04ec67f77b68d80736834f8 917 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 332 917 2.1E-239 T 12-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AMJ96_CH00119 f9c8b827e04ec67f77b68d80736834f8 917 Gene3D G3DSA:3.40.50.300 413 586 3.9E-72 T 12-10-2018 AMJ96_CH00119 f9c8b827e04ec67f77b68d80736834f8 917 Gene3D G3DSA:2.40.30.10 819 916 3.2E-33 T 12-10-2018 AMJ96_CH00119 f9c8b827e04ec67f77b68d80736834f8 917 ProSitePatterns PS01176 Initiation factor 2 signature. 868 890 - T 12-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AMJ96_CH00119 f9c8b827e04ec67f77b68d80736834f8 917 Gene3D G3DSA:3.40.50.10050 711 818 4.2E-39 T 12-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily AMJ96_CH00119 f9c8b827e04ec67f77b68d80736834f8 917 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 339 389 2.9E-9 T 12-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal AMJ96_CH00119 f9c8b827e04ec67f77b68d80736834f8 917 SUPERFAMILY SSF50447 819 915 1.61E-30 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMJ96_CH00119 f9c8b827e04ec67f77b68d80736834f8 917 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 7 915 17.028 T 12-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AMJ96_CH00119 f9c8b827e04ec67f77b68d80736834f8 917 Pfam PF11987 Translation-initiation factor 2 702 807 4.2E-40 T 12-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 AMJ96_CH00119 f9c8b827e04ec67f77b68d80736834f8 917 Pfam PF00009 Elongation factor Tu GTP binding domain 420 576 4.0E-33 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH00119 f9c8b827e04ec67f77b68d80736834f8 917 SUPERFAMILY SSF50447 587 671 6.24E-26 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMJ96_CH00119 f9c8b827e04ec67f77b68d80736834f8 917 Gene3D G3DSA:2.40.30.10 587 706 2.6E-41 T 12-10-2018 AMJ96_CH00119 f9c8b827e04ec67f77b68d80736834f8 917 SUPERFAMILY SSF52540 412 587 2.12E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00119 f9c8b827e04ec67f77b68d80736834f8 917 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 15 52 2.1E-8 T 12-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial AMJ96_CH00119 f9c8b827e04ec67f77b68d80736834f8 917 SUPERFAMILY SSF52156 699 824 4.05E-37 T 12-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily AMJ96_CH00119 f9c8b827e04ec67f77b68d80736834f8 917 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 417 574 2.8E-34 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMJ96_CH00765 82532f0b579a1bca9e7c5e9a1d305ff5 1250 Pfam PF00989 PAS fold 883 945 1.4E-8 T 12-10-2018 IPR013767 PAS fold GO:0006355 AMJ96_CH00765 82532f0b579a1bca9e7c5e9a1d305ff5 1250 SUPERFAMILY SSF55785 894 1005 2.58E-18 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH00765 82532f0b579a1bca9e7c5e9a1d305ff5 1250 SUPERFAMILY SSF47384 1002 1087 6.47E-19 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH00765 82532f0b579a1bca9e7c5e9a1d305ff5 1250 SMART SM00387 1132 1246 2.5E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00765 82532f0b579a1bca9e7c5e9a1d305ff5 1250 Pfam PF13188 PAS domain 758 797 0.027 T 12-10-2018 IPR000014 PAS domain AMJ96_CH00765 82532f0b579a1bca9e7c5e9a1d305ff5 1250 SMART SM00388 1017 1086 5.8E-17 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH00765 82532f0b579a1bca9e7c5e9a1d305ff5 1250 Gene3D G3DSA:3.30.565.10 1085 1247 1.4E-34 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00765 82532f0b579a1bca9e7c5e9a1d305ff5 1250 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1134 1244 1.1E-17 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00765 82532f0b579a1bca9e7c5e9a1d305ff5 1250 SUPERFAMILY SSF55874 1075 1244 1.96E-37 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00765 82532f0b579a1bca9e7c5e9a1d305ff5 1250 Gene3D G3DSA:3.30.450.20 879 995 8.9E-20 T 12-10-2018 AMJ96_CH00765 82532f0b579a1bca9e7c5e9a1d305ff5 1250 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 883 1004 5.3E-13 T 12-10-2018 IPR000014 PAS domain AMJ96_CH00765 82532f0b579a1bca9e7c5e9a1d305ff5 1250 SMART SM00091 883 949 2.1E-9 T 12-10-2018 IPR000014 PAS domain AMJ96_CH00765 82532f0b579a1bca9e7c5e9a1d305ff5 1250 Pfam PF00512 His Kinase A (phospho-acceptor) domain 1018 1086 2.6E-16 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH00765 82532f0b579a1bca9e7c5e9a1d305ff5 1250 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1230 1243 4.1E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00765 82532f0b579a1bca9e7c5e9a1d305ff5 1250 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1170 1184 4.1E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00765 82532f0b579a1bca9e7c5e9a1d305ff5 1250 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1206 1224 4.1E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00765 82532f0b579a1bca9e7c5e9a1d305ff5 1250 Gene3D G3DSA:1.10.287.130 996 1084 7.8E-24 T 12-10-2018 AMJ96_CH02181 6dcadb85f38b64bffac0fd72652cd6d7 168 SUPERFAMILY SSF46785 5 141 2.73E-36 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02181 6dcadb85f38b64bffac0fd72652cd6d7 168 Pfam PF01638 HxlR-like helix-turn-helix 20 107 1.4E-22 T 12-10-2018 IPR002577 Helix-turn-helix, HxlR type AMJ96_CH02181 6dcadb85f38b64bffac0fd72652cd6d7 168 Gene3D G3DSA:1.10.10.10 1 163 8.1E-50 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02013 5952772991054b1f9b5f593020f6032f 166 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 19 160 2.9E-43 T 12-10-2018 IPR008136 CinA, C-terminal AMJ96_CH02013 5952772991054b1f9b5f593020f6032f 166 SUPERFAMILY SSF142433 3 164 3.66E-52 T 12-10-2018 IPR036653 CinA-like, C-terminal AMJ96_CH02013 5952772991054b1f9b5f593020f6032f 166 Gene3D G3DSA:3.90.950.20 1 164 7.0E-59 T 12-10-2018 IPR036653 CinA-like, C-terminal AMJ96_CH02013 5952772991054b1f9b5f593020f6032f 166 Pfam PF02464 Competence-damaged protein 10 163 1.6E-50 T 12-10-2018 IPR008136 CinA, C-terminal AMJ96_CH03507 2ef554197622b7d1f9aec7060232f2d5 484 TIGRFAM TIGR02033 D-hydantoinase: dihydropyrimidinase 4 452 1.9E-181 T 12-10-2018 IPR011778 Hydantoinase/dihydropyrimidinase GO:0005737 Reactome: R-HSA-399956 AMJ96_CH03507 2ef554197622b7d1f9aec7060232f2d5 484 SUPERFAMILY SSF51338 1 64 1.71E-17 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH03507 2ef554197622b7d1f9aec7060232f2d5 484 SUPERFAMILY SSF51338 345 455 4.12E-35 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH03507 2ef554197622b7d1f9aec7060232f2d5 484 Gene3D G3DSA:2.30.40.10 4 454 1.1E-194 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH03507 2ef554197622b7d1f9aec7060232f2d5 484 SUPERFAMILY SSF51556 51 380 5.26E-112 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_CH03507 2ef554197622b7d1f9aec7060232f2d5 484 Gene3D G3DSA:3.20.20.140 51 421 1.1E-194 T 12-10-2018 AMJ96_CH03507 2ef554197622b7d1f9aec7060232f2d5 484 Pfam PF01979 Amidohydrolase family 47 412 1.7E-27 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMJ96_CH03956 d5cb448ad7788f09f4aa41b34de39642 405 SMART SM00044 182 384 4.0E-4 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH03956 d5cb448ad7788f09f4aa41b34de39642 405 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 218 398 7.8E-17 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH03956 d5cb448ad7788f09f4aa41b34de39642 405 Gene3D G3DSA:3.30.70.1230 207 403 4.7E-38 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03956 d5cb448ad7788f09f4aa41b34de39642 405 SUPERFAMILY SSF55073 211 399 5.97E-40 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH04090 e3062be58b47deb3e77c4043eed6204f 305 SUPERFAMILY SSF161098 64 292 1.57E-51 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH04090 e3062be58b47deb3e77c4043eed6204f 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 297 1.4E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH04090 e3062be58b47deb3e77c4043eed6204f 305 Gene3D G3DSA:1.10.3720.10 60 302 2.7E-58 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02655 37b7d5ced8a9e581574b43d1c3bb9c25 98 Pfam PF06169 Protein of unknown function (DUF982) 11 85 5.2E-11 T 12-10-2018 IPR010385 Protein of unknown function DUF982 AMJ96_PA00053 a360aed28f75f4aa01afdd8579e4f2dd 352 SMART SM00354 14 83 8.2E-22 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00053 a360aed28f75f4aa01afdd8579e4f2dd 352 Gene3D G3DSA:3.40.50.2300 73 323 6.7E-55 T 12-10-2018 AMJ96_PA00053 a360aed28f75f4aa01afdd8579e4f2dd 352 Gene3D G3DSA:3.40.50.2300 172 304 6.7E-55 T 12-10-2018 AMJ96_PA00053 a360aed28f75f4aa01afdd8579e4f2dd 352 SUPERFAMILY SSF53822 73 344 9.85E-53 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PA00053 a360aed28f75f4aa01afdd8579e4f2dd 352 Pfam PF00356 Bacterial regulatory proteins, lacI family 16 61 1.2E-13 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00053 a360aed28f75f4aa01afdd8579e4f2dd 352 Pfam PF13377 Periplasmic binding protein-like domain 180 342 1.0E-27 T 12-10-2018 AMJ96_PA00053 a360aed28f75f4aa01afdd8579e4f2dd 352 SUPERFAMILY SSF47413 13 70 6.57E-14 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PA00053 a360aed28f75f4aa01afdd8579e4f2dd 352 Gene3D G3DSA:1.10.260.40 13 72 1.4E-18 T 12-10-2018 AMJ96_CH02135 a85fc41cbedb52e987d7d3e863980d02 204 Pfam PF07729 FCD domain 78 199 1.7E-25 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH02135 a85fc41cbedb52e987d7d3e863980d02 204 SUPERFAMILY SSF48008 73 202 4.97E-22 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH02135 a85fc41cbedb52e987d7d3e863980d02 204 SUPERFAMILY SSF46785 5 95 1.42E-11 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02135 a85fc41cbedb52e987d7d3e863980d02 204 SMART SM00345 9 67 2.2E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02135 a85fc41cbedb52e987d7d3e863980d02 204 Gene3D G3DSA:1.10.10.10 2 69 3.3E-12 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02135 a85fc41cbedb52e987d7d3e863980d02 204 SMART SM00895 77 200 6.5E-17 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH02135 a85fc41cbedb52e987d7d3e863980d02 204 Gene3D G3DSA:1.20.120.530 73 202 3.4E-24 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH02135 a85fc41cbedb52e987d7d3e863980d02 204 Pfam PF00392 Bacterial regulatory proteins, gntR family 7 67 2.4E-10 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02940 1e037ec7bd3270e9903d4b62023cec99 493 SUPERFAMILY SSF82689 225 315 2.75E-8 T 12-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AMJ96_CH02940 1e037ec7bd3270e9903d4b62023cec99 493 SUPERFAMILY SSF50182 154 220 1.77E-12 T 12-10-2018 IPR010920 LSM domain superfamily AMJ96_CH02940 1e037ec7bd3270e9903d4b62023cec99 493 SMART SM00100 347 460 1.1E-12 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_CH02940 1e037ec7bd3270e9903d4b62023cec99 493 Gene3D G3DSA:2.30.30.60 170 219 2.4E-5 T 12-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily AMJ96_CH02940 1e037ec7bd3270e9903d4b62023cec99 493 Gene3D G3DSA:2.60.120.10 337 471 6.6E-22 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH02940 1e037ec7bd3270e9903d4b62023cec99 493 PIRSF PIRSF026673 2 490 2.1E-198 T 12-10-2018 IPR016846 Predicted ion channel, cNMP-binding AMJ96_CH02940 1e037ec7bd3270e9903d4b62023cec99 493 Pfam PF00027 Cyclic nucleotide-binding domain 366 447 1.5E-12 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_CH02940 1e037ec7bd3270e9903d4b62023cec99 493 Gene3D G3DSA:3.30.70.100 229 316 1.9E-5 T 12-10-2018 AMJ96_CH02940 1e037ec7bd3270e9903d4b62023cec99 493 Pfam PF00924 Mechanosensitive ion channel 116 310 7.6E-30 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMJ96_CH02940 1e037ec7bd3270e9903d4b62023cec99 493 SUPERFAMILY SSF51206 341 466 2.75E-22 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 Pfam PF00563 EAL domain 653 886 4.3E-67 T 12-10-2018 IPR001633 EAL domain AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 SMART SM00086 171 213 0.091 T 12-10-2018 IPR001610 PAC motif AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 SMART SM00086 424 465 12.0 T 12-10-2018 IPR001610 PAC motif AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 SMART SM00086 297 339 8.0 T 12-10-2018 IPR001610 PAC motif AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 Gene3D G3DSA:3.30.70.270 470 648 3.3E-62 T 12-10-2018 AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 Gene3D G3DSA:3.30.450.20 226 351 1.8E-14 T 12-10-2018 AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 SUPERFAMILY SSF55785 210 337 5.32E-20 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 Pfam PF00990 Diguanylate cyclase, GGDEF domain 476 632 3.4E-53 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 SUPERFAMILY SSF55785 336 463 4.51E-26 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 SUPERFAMILY SSF55785 104 216 1.18E-20 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 SUPERFAMILY SSF141868 652 894 2.88E-84 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 SMART SM00052 647 891 2.4E-110 T 12-10-2018 IPR001633 EAL domain AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 Pfam PF08448 PAS fold 233 340 6.4E-14 T 12-10-2018 IPR013656 PAS fold-4 AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 Pfam PF08448 PAS fold 105 215 3.0E-14 T 12-10-2018 IPR013656 PAS fold-4 AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 Pfam PF08448 PAS fold 359 465 6.4E-17 T 12-10-2018 IPR013656 PAS fold-4 AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 SMART SM00091 99 165 6.7E-4 T 12-10-2018 IPR000014 PAS domain AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 SMART SM00091 225 291 0.42 T 12-10-2018 IPR000014 PAS domain AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 SMART SM00091 351 417 6.4E-11 T 12-10-2018 IPR000014 PAS domain AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 Gene3D G3DSA:3.20.20.450 649 898 1.2E-94 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 SMART SM00267 465 637 1.1E-70 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 Gene3D G3DSA:3.30.450.20 352 463 1.2E-22 T 12-10-2018 AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 473 634 5.3E-47 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 SUPERFAMILY SSF55073 481 639 4.24E-53 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 Gene3D G3DSA:3.30.450.20 96 225 1.4E-21 T 12-10-2018 AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 107 220 1.0E-14 T 12-10-2018 IPR000014 PAS domain AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 228 343 8.8E-10 T 12-10-2018 IPR000014 PAS domain AMJ96_PB00182 dd1f48dc360da53955e37ffaf4723480 932 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 350 471 3.8E-18 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00137 33f4ff406e5172a1597c11b0c99dfdff 356 Pfam PF08402 TOBE domain 281 328 1.3E-4 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_PD00137 33f4ff406e5172a1597c11b0c99dfdff 356 Gene3D G3DSA:2.40.50.100 246 286 8.9E-11 T 12-10-2018 AMJ96_PD00137 33f4ff406e5172a1597c11b0c99dfdff 356 SMART SM00382 34 226 1.1E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00137 33f4ff406e5172a1597c11b0c99dfdff 356 SUPERFAMILY SSF50331 243 339 1.68E-16 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_PD00137 33f4ff406e5172a1597c11b0c99dfdff 356 Pfam PF00005 ABC transporter 25 168 3.6E-23 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00137 33f4ff406e5172a1597c11b0c99dfdff 356 Gene3D G3DSA:3.40.50.300 1 245 2.3E-62 T 12-10-2018 AMJ96_PD00137 33f4ff406e5172a1597c11b0c99dfdff 356 SUPERFAMILY SSF52540 4 249 6.61E-67 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00137 33f4ff406e5172a1597c11b0c99dfdff 356 Gene3D G3DSA:2.40.50.140 295 338 8.9E-11 T 12-10-2018 AMJ96_CH00914 a256c9c5a566983a498e58503adbf837 193 SUPERFAMILY SSF53254 7 191 7.92E-50 T 12-10-2018 IPR029033 Histidine phosphatase superfamily AMJ96_CH00914 a256c9c5a566983a498e58503adbf837 193 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 8 191 8.7E-50 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMJ96_CH00914 a256c9c5a566983a498e58503adbf837 193 PIRSF PIRSF000709 5 164 1.6E-10 T 12-10-2018 AMJ96_CH00914 a256c9c5a566983a498e58503adbf837 193 SMART SM00855 7 151 2.3E-20 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMJ96_CH00914 a256c9c5a566983a498e58503adbf837 193 Gene3D G3DSA:3.40.50.1240 2 193 5.7E-53 T 12-10-2018 IPR029033 Histidine phosphatase superfamily AMJ96_CH02596 9f784b3acc0d5bf9132d5176777f57d1 481 Pfam PF07690 Major Facilitator Superfamily 27 418 4.1E-41 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH02596 9f784b3acc0d5bf9132d5176777f57d1 481 Gene3D G3DSA:1.20.1720.10 22 229 1.6E-49 T 12-10-2018 AMJ96_CH02596 9f784b3acc0d5bf9132d5176777f57d1 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 25 49 3.8E-6 T 12-10-2018 AMJ96_CH02596 9f784b3acc0d5bf9132d5176777f57d1 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 146 170 3.8E-6 T 12-10-2018 AMJ96_CH02596 9f784b3acc0d5bf9132d5176777f57d1 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 116 136 3.8E-6 T 12-10-2018 AMJ96_CH02596 9f784b3acc0d5bf9132d5176777f57d1 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 409 428 3.8E-6 T 12-10-2018 AMJ96_CH02596 9f784b3acc0d5bf9132d5176777f57d1 481 SUPERFAMILY SSF103473 20 467 3.27E-52 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH02596 9f784b3acc0d5bf9132d5176777f57d1 481 Gene3D G3DSA:1.20.1250.20 266 472 1.1E-14 T 12-10-2018 AMJ96_CH01630 c50dd8961018288ab1b4b1fe05e5ee4c 182 PRINTS PR01011 Glutathione peroxidase family signature 23 40 3.3E-17 T 12-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMJ96_CH01630 c50dd8961018288ab1b4b1fe05e5ee4c 182 PRINTS PR01011 Glutathione peroxidase family signature 141 150 3.3E-17 T 12-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMJ96_CH01630 c50dd8961018288ab1b4b1fe05e5ee4c 182 PRINTS PR01011 Glutathione peroxidase family signature 58 74 3.3E-17 T 12-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMJ96_CH01630 c50dd8961018288ab1b4b1fe05e5ee4c 182 SUPERFAMILY SSF52833 5 179 3.84E-49 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH01630 c50dd8961018288ab1b4b1fe05e5ee4c 182 ProSitePatterns PS00460 Glutathione peroxidases active site. 25 40 - T 12-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 AMJ96_CH01630 c50dd8961018288ab1b4b1fe05e5ee4c 182 Gene3D G3DSA:3.40.30.10 1 181 5.3E-56 T 12-10-2018 AMJ96_CH01630 c50dd8961018288ab1b4b1fe05e5ee4c 182 PIRSF PIRSF000303 1 182 1.1E-56 T 12-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMJ96_CH01630 c50dd8961018288ab1b4b1fe05e5ee4c 182 Pfam PF00255 Glutathione peroxidase 7 111 9.1E-36 T 12-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AMJ96_PD00252 b0105b6924e044764340d94db20fe326 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 270 9.3E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00252 b0105b6924e044764340d94db20fe326 278 Gene3D G3DSA:1.10.3720.10 2 270 7.7E-56 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00252 b0105b6924e044764340d94db20fe326 278 SUPERFAMILY SSF161098 10 278 1.4E-60 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH04265 a0665e13bdda63cda3050ce77f9c194d 61 Pfam PF01783 Ribosomal L32p protein family 2 56 2.9E-23 T 12-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04265 a0665e13bdda63cda3050ce77f9c194d 61 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 1.9E-24 T 12-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04265 a0665e13bdda63cda3050ce77f9c194d 61 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 55 19.743 T 12-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04265 a0665e13bdda63cda3050ce77f9c194d 61 SUPERFAMILY SSF57829 1 55 1.28E-20 T 12-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 AMJ96_CH04193 f3a381a214bedd72a00a5e24711db11f 215 SUPERFAMILY SSF52540 3 192 8.52E-38 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04193 f3a381a214bedd72a00a5e24711db11f 215 SMART SM00382 27 204 2.9E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04193 f3a381a214bedd72a00a5e24711db11f 215 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH04193 f3a381a214bedd72a00a5e24711db11f 215 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 3 203 4.4E-77 T 12-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 AMJ96_CH04193 f3a381a214bedd72a00a5e24711db11f 215 Gene3D G3DSA:3.40.50.300 1 203 3.8E-42 T 12-10-2018 AMJ96_CH04193 f3a381a214bedd72a00a5e24711db11f 215 Pfam PF00005 ABC transporter 20 161 5.6E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH01235 74538c61a7ac3c9df096d74fd98cf043 413 Pfam PF00529 HlyD membrane-fusion protein of T1SS 339 383 9.5E-7 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMJ96_CH01235 74538c61a7ac3c9df096d74fd98cf043 413 Gene3D G3DSA:2.40.50.100 96 154 5.5E-12 T 12-10-2018 AMJ96_CH01235 74538c61a7ac3c9df096d74fd98cf043 413 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 107 127 1.0E-5 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH01235 74538c61a7ac3c9df096d74fd98cf043 413 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 378 393 1.0E-5 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH01235 74538c61a7ac3c9df096d74fd98cf043 413 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 95 338 3.9E-20 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMJ96_CH01235 74538c61a7ac3c9df096d74fd98cf043 413 Gene3D G3DSA:1.10.287.470 160 228 4.1E-5 T 12-10-2018 AMJ96_CH01235 74538c61a7ac3c9df096d74fd98cf043 413 Gene3D G3DSA:2.40.30.170 276 399 1.6E-38 T 12-10-2018 AMJ96_CH01235 74538c61a7ac3c9df096d74fd98cf043 413 SUPERFAMILY SSF111369 234 336 8.76E-14 T 12-10-2018 AMJ96_CH01235 74538c61a7ac3c9df096d74fd98cf043 413 SUPERFAMILY SSF111369 95 180 8.63E-12 T 12-10-2018 AMJ96_PC00019 5ebbde5b7b64b7e844358c8da8371992 345 SMART SM00354 1 71 4.9E-13 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PC00019 5ebbde5b7b64b7e844358c8da8371992 345 Gene3D G3DSA:3.40.50.2300 80 313 1.8E-60 T 12-10-2018 AMJ96_PC00019 5ebbde5b7b64b7e844358c8da8371992 345 Pfam PF13377 Periplasmic binding protein-like domain 174 338 6.6E-25 T 12-10-2018 AMJ96_PC00019 5ebbde5b7b64b7e844358c8da8371992 345 Gene3D G3DSA:1.10.260.40 2 58 7.1E-19 T 12-10-2018 AMJ96_PC00019 5ebbde5b7b64b7e844358c8da8371992 345 Gene3D G3DSA:3.40.50.2300 166 295 1.8E-60 T 12-10-2018 AMJ96_PC00019 5ebbde5b7b64b7e844358c8da8371992 345 SUPERFAMILY SSF47413 3 59 1.56E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PC00019 5ebbde5b7b64b7e844358c8da8371992 345 SUPERFAMILY SSF53822 59 313 1.79E-44 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PC00019 5ebbde5b7b64b7e844358c8da8371992 345 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 48 1.2E-10 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH01314 aa4a02a273965fa0c640881f992a7e8c 467 Gene3D G3DSA:3.90.1150.10 101 437 2.5E-55 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH01314 aa4a02a273965fa0c640881f992a7e8c 467 Pfam PF00155 Aminotransferase class I and II 102 348 6.4E-14 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_CH01314 aa4a02a273965fa0c640881f992a7e8c 467 SUPERFAMILY SSF46785 11 82 8.38E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01314 aa4a02a273965fa0c640881f992a7e8c 467 SMART SM00345 19 78 9.4E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH01314 aa4a02a273965fa0c640881f992a7e8c 467 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 78 5.1E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH01314 aa4a02a273965fa0c640881f992a7e8c 467 SUPERFAMILY SSF53383 72 457 4.35E-68 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH01314 aa4a02a273965fa0c640881f992a7e8c 467 Gene3D G3DSA:1.10.10.10 8 79 7.2E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01314 aa4a02a273965fa0c640881f992a7e8c 467 Gene3D G3DSA:3.40.640.10 138 354 2.5E-55 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH02334 8fb0cad67c0426fdfa51f9cd4d6f0e68 435 SMART SM00998 352 432 6.5E-43 T 12-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMJ96_CH02334 8fb0cad67c0426fdfa51f9cd4d6f0e68 435 SUPERFAMILY SSF48557 3 432 5.03E-138 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMJ96_CH02334 8fb0cad67c0426fdfa51f9cd4d6f0e68 435 Pfam PF10397 Adenylosuccinate lyase C-terminus 353 431 5.0E-28 T 12-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMJ96_CH02334 8fb0cad67c0426fdfa51f9cd4d6f0e68 435 Gene3D G3DSA:1.20.200.10 96 350 1.7E-90 T 12-10-2018 AMJ96_CH02334 8fb0cad67c0426fdfa51f9cd4d6f0e68 435 Gene3D G3DSA:1.10.40.30 352 431 9.1E-31 T 12-10-2018 AMJ96_CH02334 8fb0cad67c0426fdfa51f9cd4d6f0e68 435 Gene3D G3DSA:1.10.275.10 1 95 1.6E-32 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal AMJ96_CH02334 8fb0cad67c0426fdfa51f9cd4d6f0e68 435 ProSitePatterns PS00163 Fumarate lyases signature. 264 273 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AMJ96_CH02334 8fb0cad67c0426fdfa51f9cd4d6f0e68 435 PRINTS PR00145 Argininosuccinate lyase family signature 264 280 4.2E-6 T 12-10-2018 AMJ96_CH02334 8fb0cad67c0426fdfa51f9cd4d6f0e68 435 PRINTS PR00145 Argininosuccinate lyase family signature 219 243 4.2E-6 T 12-10-2018 AMJ96_CH02334 8fb0cad67c0426fdfa51f9cd4d6f0e68 435 PRINTS PR00145 Argininosuccinate lyase family signature 131 151 4.2E-6 T 12-10-2018 AMJ96_CH02334 8fb0cad67c0426fdfa51f9cd4d6f0e68 435 Pfam PF00206 Lyase 7 287 6.6E-53 T 12-10-2018 IPR022761 Fumarate lyase, N-terminal AMJ96_CH02334 8fb0cad67c0426fdfa51f9cd4d6f0e68 435 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 1 432 2.7E-156 T 12-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMJ96_CH02334 8fb0cad67c0426fdfa51f9cd4d6f0e68 435 PRINTS PR00149 Fumarate lyase superfamily signature 219 246 8.5E-26 T 12-10-2018 IPR000362 Fumarate lyase family AMJ96_CH02334 8fb0cad67c0426fdfa51f9cd4d6f0e68 435 PRINTS PR00149 Fumarate lyase superfamily signature 91 109 8.5E-26 T 12-10-2018 IPR000362 Fumarate lyase family AMJ96_CH02334 8fb0cad67c0426fdfa51f9cd4d6f0e68 435 PRINTS PR00149 Fumarate lyase superfamily signature 136 154 8.5E-26 T 12-10-2018 IPR000362 Fumarate lyase family AMJ96_CH02334 8fb0cad67c0426fdfa51f9cd4d6f0e68 435 PRINTS PR00149 Fumarate lyase superfamily signature 264 280 8.5E-26 T 12-10-2018 IPR000362 Fumarate lyase family AMJ96_PD00333 74b495727ffad6cbe24cccf8e3caa5bb 311 SUPERFAMILY SSF161098 104 291 3.79E-27 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00333 74b495727ffad6cbe24cccf8e3caa5bb 311 Gene3D G3DSA:1.10.3720.10 100 306 2.7E-22 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00333 74b495727ffad6cbe24cccf8e3caa5bb 311 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 127 308 2.0E-29 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00333 74b495727ffad6cbe24cccf8e3caa5bb 311 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 35 86 5.8E-8 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMJ96_PD00601 feb176c6e4452003256ee6f194e325d2 287 SUPERFAMILY SSF63829 11 281 1.54E-55 T 12-10-2018 AMJ96_PD00601 feb176c6e4452003256ee6f194e325d2 287 Gene3D G3DSA:2.120.10.30 4 285 3.5E-71 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMJ96_PD00601 feb176c6e4452003256ee6f194e325d2 287 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 196 213 5.5E-29 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_PD00601 feb176c6e4452003256ee6f194e325d2 287 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 133 155 5.5E-29 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_PD00601 feb176c6e4452003256ee6f194e325d2 287 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 156 176 5.5E-29 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_PD00601 feb176c6e4452003256ee6f194e325d2 287 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 13 30 5.5E-29 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_PD00601 feb176c6e4452003256ee6f194e325d2 287 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 89 110 5.5E-29 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_PD00601 feb176c6e4452003256ee6f194e325d2 287 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 238 256 5.5E-29 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_PD00601 feb176c6e4452003256ee6f194e325d2 287 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 13 255 2.4E-63 T 12-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region AMJ96_CH02093 29ecdb5346cba17954aea74841e1ad35 468 SUPERFAMILY SSF55103 221 444 6.21E-7 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMJ96_CH02093 29ecdb5346cba17954aea74841e1ad35 468 Gene3D G3DSA:3.30.465.40 4 234 2.8E-42 T 12-10-2018 AMJ96_CH02093 29ecdb5346cba17954aea74841e1ad35 468 Pfam PF01565 FAD binding domain 47 180 1.0E-29 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMJ96_CH02093 29ecdb5346cba17954aea74841e1ad35 468 SUPERFAMILY SSF56176 16 215 2.29E-41 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMJ96_CH03057 24ad6d34f4986bf314d0d369a8776b35 455 SUPERFAMILY SSF54368 6 114 1.15E-18 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH03057 24ad6d34f4986bf314d0d369a8776b35 455 SMART SM01230 117 372 4.4E-98 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH03057 24ad6d34f4986bf314d0d369a8776b35 455 SUPERFAMILY SSF55931 118 453 1.47E-103 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMJ96_CH03057 24ad6d34f4986bf314d0d369a8776b35 455 Gene3D G3DSA:3.30.590.10 120 454 5.7E-101 T 12-10-2018 AMJ96_CH03057 24ad6d34f4986bf314d0d369a8776b35 455 Gene3D G3DSA:3.10.20.70 3 116 6.4E-7 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH03057 24ad6d34f4986bf314d0d369a8776b35 455 Pfam PF00120 Glutamine synthetase, catalytic domain 118 449 9.7E-107 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH00260 ac931d986f46b9bd6fda0de5304b3495 189 SUPERFAMILY SSF51182 53 186 6.11E-28 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH00260 ac931d986f46b9bd6fda0de5304b3495 189 SUPERFAMILY SSF47413 5 73 8.85E-20 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH00260 ac931d986f46b9bd6fda0de5304b3495 189 Gene3D G3DSA:2.60.120.10 82 187 1.3E-17 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH00260 ac931d986f46b9bd6fda0de5304b3495 189 Pfam PF01381 Helix-turn-helix 13 65 3.0E-15 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH00260 ac931d986f46b9bd6fda0de5304b3495 189 Gene3D G3DSA:1.10.260.40 1 81 1.0E-22 T 12-10-2018 AMJ96_CH00260 ac931d986f46b9bd6fda0de5304b3495 189 SMART SM00530 12 67 1.6E-17 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH00260 ac931d986f46b9bd6fda0de5304b3495 189 Pfam PF07883 Cupin domain 112 183 2.7E-12 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_CH01346 ffd57fec2d039fcd9e4b6540c0dec75a 440 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 139 327 3.3E-14 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMJ96_CH01346 ffd57fec2d039fcd9e4b6540c0dec75a 440 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 86 410 1.6E-86 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMJ96_CH01346 ffd57fec2d039fcd9e4b6540c0dec75a 440 Gene3D G3DSA:1.10.287.470 145 218 1.1E-70 T 12-10-2018 AMJ96_CH01346 ffd57fec2d039fcd9e4b6540c0dec75a 440 Gene3D G3DSA:2.40.50.100 110 252 1.1E-70 T 12-10-2018 AMJ96_CH01346 ffd57fec2d039fcd9e4b6540c0dec75a 440 Gene3D G3DSA:2.40.30.170 98 340 1.1E-70 T 12-10-2018 AMJ96_CH01346 ffd57fec2d039fcd9e4b6540c0dec75a 440 Gene3D G3DSA:2.40.420.20 341 406 1.1E-70 T 12-10-2018 AMJ96_CH01346 ffd57fec2d039fcd9e4b6540c0dec75a 440 SUPERFAMILY SSF111369 101 334 7.98E-43 T 12-10-2018 AMJ96_PD00432 19552beb991d398b4e18fb249beba29c 104 PRINTS PR00297 10kDa chaperonin signature 3 18 5.9E-34 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_PD00432 19552beb991d398b4e18fb249beba29c 104 PRINTS PR00297 10kDa chaperonin signature 60 72 5.9E-34 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_PD00432 19552beb991d398b4e18fb249beba29c 104 PRINTS PR00297 10kDa chaperonin signature 81 94 5.9E-34 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_PD00432 19552beb991d398b4e18fb249beba29c 104 PRINTS PR00297 10kDa chaperonin signature 25 46 5.9E-34 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_PD00432 19552beb991d398b4e18fb249beba29c 104 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 12-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 AMJ96_PD00432 19552beb991d398b4e18fb249beba29c 104 SUPERFAMILY SSF50129 1 95 4.05E-35 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_PD00432 19552beb991d398b4e18fb249beba29c 104 SMART SM00883 2 94 2.3E-61 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_PD00432 19552beb991d398b4e18fb249beba29c 104 Gene3D G3DSA:2.30.33.40 1 102 2.1E-39 T 12-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 AMJ96_PD00432 19552beb991d398b4e18fb249beba29c 104 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 26.928 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_PD00432 19552beb991d398b4e18fb249beba29c 104 Pfam PF00166 Chaperonin 10 Kd subunit 3 94 1.8E-35 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_CH00151 0b718ae6d90b77669e427cbf66ac60eb 775 SUPERFAMILY SSF53955 113 315 1.12E-72 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily AMJ96_CH00151 0b718ae6d90b77669e427cbf66ac60eb 775 Gene3D G3DSA:1.10.3810.10 117 314 1.1E-74 T 12-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH00151 0b718ae6d90b77669e427cbf66ac60eb 775 Gene3D G3DSA:3.40.710.10 317 667 3.5E-117 T 12-10-2018 AMJ96_CH00151 0b718ae6d90b77669e427cbf66ac60eb 775 SUPERFAMILY SSF56601 279 658 7.32E-121 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMJ96_CH00151 0b718ae6d90b77669e427cbf66ac60eb 775 Pfam PF00912 Transglycosylase 125 297 1.3E-62 T 12-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH00151 0b718ae6d90b77669e427cbf66ac60eb 775 Pfam PF00905 Penicillin binding protein transpeptidase domain 390 605 1.0E-30 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMJ96_CH00151 0b718ae6d90b77669e427cbf66ac60eb 775 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 136 652 3.5E-188 T 12-10-2018 AMJ96_PC00418 6810906cc52e2144e11be2611a93e04d 326 Gene3D G3DSA:3.30.420.10 73 235 7.9E-27 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_PC00418 6810906cc52e2144e11be2611a93e04d 326 Pfam PF00929 Exonuclease 75 229 2.9E-17 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMJ96_PC00418 6810906cc52e2144e11be2611a93e04d 326 SUPERFAMILY SSF53098 75 235 4.91E-35 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_PC00418 6810906cc52e2144e11be2611a93e04d 326 SMART SM00479 75 238 8.8E-18 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMJ96_CH00783 d2d3fa7a78952927be427fe90c329f9c 350 PIRSF PIRSF000451 1 350 1.9E-116 T 12-10-2018 IPR011141 Polyketide synthase, type III GO:0009058|GO:0016747 AMJ96_CH00783 d2d3fa7a78952927be427fe90c329f9c 350 Gene3D G3DSA:3.40.47.10 5 206 5.3E-60 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH00783 d2d3fa7a78952927be427fe90c329f9c 350 Pfam PF02797 Chalcone and stilbene synthases, C-terminal domain 212 326 2.5E-16 T 12-10-2018 IPR012328 Chalcone/stilbene synthase, C-terminal AMJ96_CH00783 d2d3fa7a78952927be427fe90c329f9c 350 Gene3D G3DSA:3.40.47.10 209 350 3.9E-39 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH00783 d2d3fa7a78952927be427fe90c329f9c 350 Pfam PF00195 Chalcone and stilbene synthases, N-terminal domain 7 203 1.0E-21 T 12-10-2018 IPR001099 Chalcone/stilbene synthase, N-terminal AMJ96_CH00783 d2d3fa7a78952927be427fe90c329f9c 350 SUPERFAMILY SSF53901 4 348 2.88E-51 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH00806 34d81cc9b66fea7df76f6b16f62eb66b 270 Pfam PF08241 Methyltransferase domain 103 190 7.1E-13 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMJ96_CH00806 34d81cc9b66fea7df76f6b16f62eb66b 270 Gene3D G3DSA:3.40.50.150 72 267 2.9E-22 T 12-10-2018 AMJ96_CH00806 34d81cc9b66fea7df76f6b16f62eb66b 270 SUPERFAMILY SSF53335 78 251 1.36E-23 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH02244 f38db78b2e6bebeb6e452c416b2b3a4c 167 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 2 70 3.9E-19 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMJ96_CH02244 f38db78b2e6bebeb6e452c416b2b3a4c 167 Pfam PF03840 Preprotein translocase SecG subunit 4 69 2.2E-17 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMJ96_CH02244 f38db78b2e6bebeb6e452c416b2b3a4c 167 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 2.6E-9 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMJ96_CH02244 f38db78b2e6bebeb6e452c416b2b3a4c 167 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 2.6E-9 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AMJ96_CH04077 cb101f0dc37c72ecabbbc21aed8dc500 366 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 20 242 8.4E-56 T 12-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AMJ96_CH04077 cb101f0dc37c72ecabbbc21aed8dc500 366 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 49 60 2.2E-13 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMJ96_CH04077 cb101f0dc37c72ecabbbc21aed8dc500 366 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 129 142 2.2E-13 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMJ96_CH04077 cb101f0dc37c72ecabbbc21aed8dc500 366 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 102 119 2.2E-13 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMJ96_CH04077 cb101f0dc37c72ecabbbc21aed8dc500 366 SUPERFAMILY SSF56601 7 259 8.0E-68 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMJ96_CH04077 cb101f0dc37c72ecabbbc21aed8dc500 366 Gene3D G3DSA:3.40.710.10 14 260 4.2E-74 T 12-10-2018 AMJ96_CH00754 a55bba26934923ac1335d4664885ae9c 289 Gene3D G3DSA:1.10.10.10 5 90 3.0E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00754 a55bba26934923ac1335d4664885ae9c 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 2.8E-11 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH00754 a55bba26934923ac1335d4664885ae9c 289 SUPERFAMILY SSF53850 125 277 7.06E-11 T 12-10-2018 AMJ96_CH00754 a55bba26934923ac1335d4664885ae9c 289 SUPERFAMILY SSF46785 5 105 4.99E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02523 e1fd2f894563bbef85d9ea5bcb6cd512 819 Gene3D G3DSA:2.60.120.260 5 190 3.4E-49 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily AMJ96_CH02523 e1fd2f894563bbef85d9ea5bcb6cd512 819 Gene3D G3DSA:3.20.20.80 287 634 1.2E-125 T 12-10-2018 AMJ96_CH02523 e1fd2f894563bbef85d9ea5bcb6cd512 819 Gene3D G3DSA:2.60.40.10 193 286 9.9E-13 T 12-10-2018 IPR013783 Immunoglobulin-like fold AMJ96_CH02523 e1fd2f894563bbef85d9ea5bcb6cd512 819 SUPERFAMILY SSF49303 735 815 1.29E-12 T 12-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily AMJ96_CH02523 e1fd2f894563bbef85d9ea5bcb6cd512 819 SUPERFAMILY SSF49785 9 189 3.4E-47 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily AMJ96_CH02523 e1fd2f894563bbef85d9ea5bcb6cd512 819 SUPERFAMILY SSF51445 288 636 7.98E-107 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH02523 e1fd2f894563bbef85d9ea5bcb6cd512 819 Gene3D G3DSA:2.60.40.10 730 817 5.7E-9 T 12-10-2018 IPR013783 Immunoglobulin-like fold AMJ96_CH02523 e1fd2f894563bbef85d9ea5bcb6cd512 819 SUPERFAMILY SSF49303 194 291 2.01E-16 T 12-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily AMJ96_CH02523 e1fd2f894563bbef85d9ea5bcb6cd512 819 Pfam PF00703 Glycosyl hydrolases family 2 196 291 3.7E-7 T 12-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 AMJ96_CH04139 442a113a08557374534707490ebc8ee3 300 Gene3D G3DSA:3.40.50.261 130 298 4.6E-68 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMJ96_CH04139 442a113a08557374534707490ebc8ee3 300 Pfam PF02629 CoA binding domain 6 105 1.5E-22 T 12-10-2018 IPR003781 CoA-binding GO:0048037 AMJ96_CH04139 442a113a08557374534707490ebc8ee3 300 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 298 41.467 T 12-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMJ96_CH04139 442a113a08557374534707490ebc8ee3 300 PIRSF PIRSF001553 1 300 1.6E-120 T 12-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMJ96_CH04139 442a113a08557374534707490ebc8ee3 300 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 158 187 - T 12-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site AMJ96_CH04139 442a113a08557374534707490ebc8ee3 300 Pfam PF00549 CoA-ligase 157 279 1.7E-17 T 12-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMJ96_CH04139 442a113a08557374534707490ebc8ee3 300 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 298 2.4E-127 T 12-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMJ96_CH04139 442a113a08557374534707490ebc8ee3 300 SMART SM00881 4 106 8.9E-30 T 12-10-2018 IPR003781 CoA-binding GO:0048037 AMJ96_CH04139 442a113a08557374534707490ebc8ee3 300 Gene3D G3DSA:3.40.50.720 2 129 2.3E-46 T 12-10-2018 AMJ96_CH04139 442a113a08557374534707490ebc8ee3 300 PRINTS PR01798 Succinyl-CoA synthase signature 214 227 8.3E-38 T 12-10-2018 AMJ96_CH04139 442a113a08557374534707490ebc8ee3 300 PRINTS PR01798 Succinyl-CoA synthase signature 183 201 8.3E-38 T 12-10-2018 AMJ96_CH04139 442a113a08557374534707490ebc8ee3 300 PRINTS PR01798 Succinyl-CoA synthase signature 250 267 8.3E-38 T 12-10-2018 AMJ96_CH04139 442a113a08557374534707490ebc8ee3 300 PRINTS PR01798 Succinyl-CoA synthase signature 88 105 8.3E-38 T 12-10-2018 AMJ96_CH04139 442a113a08557374534707490ebc8ee3 300 SUPERFAMILY SSF51735 1 128 4.24E-36 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH04139 442a113a08557374534707490ebc8ee3 300 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 246 259 - T 12-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site AMJ96_CH04139 442a113a08557374534707490ebc8ee3 300 SUPERFAMILY SSF52210 129 298 4.71E-50 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMJ96_CH03262 0bf9f836c6de45572260224d969e5e3d 393 Pfam PF13439 Glycosyltransferase Family 4 38 188 1.1E-17 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMJ96_CH03262 0bf9f836c6de45572260224d969e5e3d 393 SUPERFAMILY SSF53756 26 356 8.72E-62 T 12-10-2018 AMJ96_CH03262 0bf9f836c6de45572260224d969e5e3d 393 Gene3D G3DSA:3.40.50.2000 26 197 1.0E-19 T 12-10-2018 AMJ96_CH03262 0bf9f836c6de45572260224d969e5e3d 393 Pfam PF13692 Glycosyl transferases group 1 206 318 8.0E-19 T 12-10-2018 AMJ96_CH03262 0bf9f836c6de45572260224d969e5e3d 393 Gene3D G3DSA:3.40.50.2000 199 357 7.2E-24 T 12-10-2018 AMJ96_PA00063 d8362596fc12b539bd607bbab70413ba 352 SMART SM00382 47 244 2.8E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00063 d8362596fc12b539bd607bbab70413ba 352 ProSitePatterns PS00211 ABC transporters family signature. 167 181 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PA00063 d8362596fc12b539bd607bbab70413ba 352 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 244 334 3.4E-26 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PA00063 d8362596fc12b539bd607bbab70413ba 352 Pfam PF00005 ABC transporter 39 194 4.3E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00063 d8362596fc12b539bd607bbab70413ba 352 Gene3D G3DSA:3.40.50.300 9 345 5.3E-97 T 12-10-2018 AMJ96_PA00063 d8362596fc12b539bd607bbab70413ba 352 SUPERFAMILY SSF52540 11 265 1.78E-66 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00063 d8362596fc12b539bd607bbab70413ba 352 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 246 313 1.0E-18 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 Pfam PF00403 Heavy-metal-associated domain 40 103 2.0E-9 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 219 736 6.0E-106 T 12-10-2018 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 Pfam PF00122 E1-E2 ATPase 253 430 3.3E-44 T 12-10-2018 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 189 736 1.3E-154 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 SUPERFAMILY SSF55008 31 109 2.62E-13 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 453 459 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 SUPERFAMILY SSF81665 196 705 7.85E-15 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 SUPERFAMILY SSF81653 259 351 4.71E-19 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 Gene3D G3DSA:2.70.150.20 244 355 2.4E-28 T 12-10-2018 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 ProSitePatterns PS01229 Hypothetical cof family signature 2. 634 656 - T 12-10-2018 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 PRINTS PR00943 Copper-transporting ATPase signature 611 628 3.7E-7 T 12-10-2018 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 PRINTS PR00943 Copper-transporting ATPase signature 52 66 3.7E-7 T 12-10-2018 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 PRINTS PR00943 Copper-transporting ATPase signature 374 388 3.7E-7 T 12-10-2018 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 PRINTS PR00943 Copper-transporting ATPase signature 220 239 3.7E-7 T 12-10-2018 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 PRINTS PR00943 Copper-transporting ATPase signature 240 258 3.7E-7 T 12-10-2018 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 PRINTS PR00943 Copper-transporting ATPase signature 668 682 3.7E-7 T 12-10-2018 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 Pfam PF00702 haloacid dehalogenase-like hydrolase 449 647 3.6E-32 T 12-10-2018 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 ProSitePatterns PS01047 Heavy-metal-associated domain. 42 71 - T 12-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 Gene3D G3DSA:3.40.1110.10 461 566 6.3E-57 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 Gene3D G3DSA:3.40.50.1000 431 672 6.3E-57 T 12-10-2018 IPR023214 HAD superfamily AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 SUPERFAMILY SSF56784 449 734 6.88E-42 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 223 718 6.0E-68 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 451 465 5.4E-19 T 12-10-2018 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 301 315 5.4E-19 T 12-10-2018 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 634 653 5.4E-19 T 12-10-2018 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 657 669 5.4E-19 T 12-10-2018 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 581 591 5.4E-19 T 12-10-2018 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 171 736 7.2E-157 T 12-10-2018 AMJ96_PB00370 7ae9a0210427bc214557cebd11d22330 760 Gene3D G3DSA:3.30.70.100 35 111 1.1E-12 T 12-10-2018 AMJ96_CH03046 4189327802a50a3e8992c357d8487365 316 SUPERFAMILY SSF53474 10 305 1.16E-36 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH03046 4189327802a50a3e8992c357d8487365 316 Gene3D G3DSA:3.40.50.1820 3 307 1.4E-49 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH03046 4189327802a50a3e8992c357d8487365 316 Pfam PF12146 Serine aminopeptidase, S33 25 288 6.1E-51 T 12-10-2018 IPR022742 Serine aminopeptidase, S33 AMJ96_PC00361 53c882cc28273ee87243831f0ae9900c 273 TIGRFAM TIGR03214 ura-cupin: putative allantoin catabolism protein 6 272 5.6E-122 T 12-10-2018 IPR017627 Conserved hypothetical protein CHP03214, putative allantoin-urate catabolism protein KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 AMJ96_PC00361 53c882cc28273ee87243831f0ae9900c 273 SUPERFAMILY SSF51182 19 272 1.08E-81 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_PC00361 53c882cc28273ee87243831f0ae9900c 273 Pfam PF07883 Cupin domain 195 255 4.8E-8 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_PC00361 53c882cc28273ee87243831f0ae9900c 273 Pfam PF07883 Cupin domain 72 141 2.6E-13 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_PC00361 53c882cc28273ee87243831f0ae9900c 273 Gene3D G3DSA:2.60.120.10 40 165 8.5E-102 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PC00361 53c882cc28273ee87243831f0ae9900c 273 Gene3D G3DSA:2.60.120.10 27 268 8.5E-102 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH03052 d600be6db82f7f4e000026b39f3a7ef4 279 Pfam PF14486 Domain of unknown function (DUF4432) 194 277 4.1E-14 T 12-10-2018 IPR027839 Protein of unknown function DUF4432 AMJ96_CH03052 d600be6db82f7f4e000026b39f3a7ef4 279 Pfam PF14486 Domain of unknown function (DUF4432) 47 167 9.8E-16 T 12-10-2018 IPR027839 Protein of unknown function DUF4432 AMJ96_CH03052 d600be6db82f7f4e000026b39f3a7ef4 279 SUPERFAMILY SSF74650 67 278 2.04E-7 T 12-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 AMJ96_CH03052 d600be6db82f7f4e000026b39f3a7ef4 279 Gene3D G3DSA:2.70.98.80 34 279 4.4E-31 T 12-10-2018 AMJ96_CH01020 e879ce2e612dd17813153320a42a7b34 1153 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1145 20.327 T 12-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 AMJ96_CH01020 e879ce2e612dd17813153320a42a7b34 1153 Pfam PF02463 RecF/RecN/SMC N terminal domain 4 1136 4.0E-58 T 12-10-2018 IPR003395 RecF/RecN/SMC, N-terminal AMJ96_CH01020 e879ce2e612dd17813153320a42a7b34 1153 SUPERFAMILY SSF75553 506 644 5.1E-6 T 12-10-2018 IPR036277 SMCs flexible hinge superfamily GO:0005515|GO:0005524|GO:0005694|GO:0051276 AMJ96_CH01020 e879ce2e612dd17813153320a42a7b34 1153 PIRSF PIRSF005719 569 1152 6.0E-105 T 12-10-2018 IPR024704 Structural maintenance of chromosomes protein AMJ96_CH01020 e879ce2e612dd17813153320a42a7b34 1153 PIRSF PIRSF005719 1 540 2.5E-99 T 12-10-2018 IPR024704 Structural maintenance of chromosomes protein AMJ96_CH01020 e879ce2e612dd17813153320a42a7b34 1153 SUPERFAMILY SSF52540 1 1142 5.6E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01020 e879ce2e612dd17813153320a42a7b34 1153 Gene3D G3DSA:3.40.50.300 1 302 4.5E-44 T 12-10-2018 AMJ96_CH01020 e879ce2e612dd17813153320a42a7b34 1153 Gene3D G3DSA:3.40.50.300 913 1153 3.4E-48 T 12-10-2018 AMJ96_CH00536 ed70dda871c9b6cb10ebe7381f054e2a 130 Hamap MF_00791 Protein ApaG [apaG]. 2 130 33.831 T 12-10-2018 IPR023065 Uncharacterised protein family ApaG AMJ96_CH00536 ed70dda871c9b6cb10ebe7381f054e2a 130 Pfam PF04379 ApaG domain 19 104 4.7E-34 T 12-10-2018 IPR007474 ApaG domain AMJ96_CH00536 ed70dda871c9b6cb10ebe7381f054e2a 130 Gene3D G3DSA:2.60.40.1470 2 129 2.7E-48 T 12-10-2018 IPR036767 ApaG domain superfamily AMJ96_CH00536 ed70dda871c9b6cb10ebe7381f054e2a 130 SUPERFAMILY SSF110069 5 127 1.96E-49 T 12-10-2018 IPR036767 ApaG domain superfamily AMJ96_PC00347 388e3aaea7b0c31ef56df7ee5385033d 325 Gene3D G3DSA:1.10.3720.10 90 315 1.9E-16 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00347 388e3aaea7b0c31ef56df7ee5385033d 325 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 323 2.8E-37 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00347 388e3aaea7b0c31ef56df7ee5385033d 325 SUPERFAMILY SSF161098 94 306 1.44E-15 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02101 5813c67b16e86b5483048c5d140d533e 213 Pfam PF06283 Trehalose utilisation 4 211 6.9E-40 T 12-10-2018 IPR029010 ThuA-like domain AMJ96_CH02101 5813c67b16e86b5483048c5d140d533e 213 Gene3D G3DSA:3.40.50.880 2 213 1.0E-35 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH02101 5813c67b16e86b5483048c5d140d533e 213 SUPERFAMILY SSF52317 4 213 6.1E-43 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH00861 6f61071d7ac5ea53d9393eab6418a38e 123 PIRSF PIRSF039020 1 122 1.2E-42 T 12-10-2018 IPR026275 Glyoxalase/dioxygenase/EhpR AMJ96_CH00861 6f61071d7ac5ea53d9393eab6418a38e 123 Gene3D G3DSA:3.30.720.110 66 121 1.4E-23 T 12-10-2018 AMJ96_CH00861 6f61071d7ac5ea53d9393eab6418a38e 123 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 115 1.3E-7 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH00861 6f61071d7ac5ea53d9393eab6418a38e 123 Gene3D G3DSA:3.30.720.120 2 53 2.7E-22 T 12-10-2018 AMJ96_CH00861 6f61071d7ac5ea53d9393eab6418a38e 123 SUPERFAMILY SSF54593 7 119 5.78E-20 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_PA00074 fe9334104a8504e9ef28ff72f3639e3b 329 Gene3D G3DSA:3.40.50.720 5 303 2.3E-41 T 12-10-2018 AMJ96_PA00074 fe9334104a8504e9ef28ff72f3639e3b 329 Pfam PF00106 short chain dehydrogenase 9 135 1.4E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00074 fe9334104a8504e9ef28ff72f3639e3b 329 SUPERFAMILY SSF51735 7 251 5.76E-33 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PA00074 fe9334104a8504e9ef28ff72f3639e3b 329 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 192 209 5.2E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00074 fe9334104a8504e9ef28ff72f3639e3b 329 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 5.2E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00074 fe9334104a8504e9ef28ff72f3639e3b 329 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.2E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01899 6f02097dbb7a35c17d9b1499355e35f3 494 SUPERFAMILY SSF109998 256 441 3.04E-46 T 12-10-2018 IPR027304 Trigger factor/SurA domain superfamily AMJ96_CH01899 6f02097dbb7a35c17d9b1499355e35f3 494 PIRSF PIRSF003095 1 447 5.7E-135 T 12-10-2018 IPR005215 Trigger factor GO:0015031 AMJ96_CH01899 6f02097dbb7a35c17d9b1499355e35f3 494 Pfam PF05697 Bacterial trigger factor protein (TF) 1 149 3.0E-34 T 12-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 AMJ96_CH01899 6f02097dbb7a35c17d9b1499355e35f3 494 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 270 425 2.6E-44 T 12-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 AMJ96_CH01899 6f02097dbb7a35c17d9b1499355e35f3 494 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 165 245 9.8E-17 T 12-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AMJ96_CH01899 6f02097dbb7a35c17d9b1499355e35f3 494 Hamap MF_00303 Trigger factor [tig]. 1 436 20.554 T 12-10-2018 IPR005215 Trigger factor GO:0015031 AMJ96_CH01899 6f02097dbb7a35c17d9b1499355e35f3 494 Gene3D G3DSA:3.30.70.1050 1 123 3.3E-31 T 12-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 AMJ96_CH01899 6f02097dbb7a35c17d9b1499355e35f3 494 Gene3D G3DSA:1.10.3120.10 124 429 2.5E-89 T 12-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 AMJ96_CH01899 6f02097dbb7a35c17d9b1499355e35f3 494 SUPERFAMILY SSF54534 107 248 1.75E-34 T 12-10-2018 AMJ96_CH01899 6f02097dbb7a35c17d9b1499355e35f3 494 SUPERFAMILY SSF102735 1 138 2.49E-32 T 12-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 AMJ96_CH01899 6f02097dbb7a35c17d9b1499355e35f3 494 Gene3D G3DSA:3.10.50.40 158 254 2.5E-89 T 12-10-2018 AMJ96_CH01899 6f02097dbb7a35c17d9b1499355e35f3 494 TIGRFAM TIGR00115 tig: trigger factor 11 425 7.1E-128 T 12-10-2018 IPR005215 Trigger factor GO:0015031 AMJ96_CH01760 50738d14f65e334d79a4b4748f3e772f 510 SUPERFAMILY SSF55874 335 497 4.71E-40 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH01760 50738d14f65e334d79a4b4748f3e772f 510 SMART SM00388 277 345 5.9E-13 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH01760 50738d14f65e334d79a4b4748f3e772f 510 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 390 497 3.1E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH01760 50738d14f65e334d79a4b4748f3e772f 510 SMART SM00091 3 68 0.041 T 12-10-2018 IPR000014 PAS domain AMJ96_CH01760 50738d14f65e334d79a4b4748f3e772f 510 SMART SM00091 118 186 34.0 T 12-10-2018 IPR000014 PAS domain AMJ96_CH01760 50738d14f65e334d79a4b4748f3e772f 510 SUPERFAMILY SSF47384 261 346 1.51E-15 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH01760 50738d14f65e334d79a4b4748f3e772f 510 Gene3D G3DSA:3.30.565.10 354 504 3.5E-42 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH01760 50738d14f65e334d79a4b4748f3e772f 510 SUPERFAMILY SSF55785 5 84 4.19E-6 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH01760 50738d14f65e334d79a4b4748f3e772f 510 Gene3D G3DSA:1.10.287.130 243 343 1.2E-14 T 12-10-2018 AMJ96_CH01760 50738d14f65e334d79a4b4748f3e772f 510 Pfam PF12860 PAS fold 124 234 3.1E-26 T 12-10-2018 AMJ96_CH01760 50738d14f65e334d79a4b4748f3e772f 510 Pfam PF12860 PAS fold 9 106 6.4E-11 T 12-10-2018 AMJ96_CH01760 50738d14f65e334d79a4b4748f3e772f 510 SUPERFAMILY SSF55785 103 230 2.26E-5 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH01760 50738d14f65e334d79a4b4748f3e772f 510 Gene3D G3DSA:3.30.450.20 105 242 3.8E-9 T 12-10-2018 AMJ96_CH01760 50738d14f65e334d79a4b4748f3e772f 510 SMART SM00387 389 499 1.2E-37 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH01760 50738d14f65e334d79a4b4748f3e772f 510 Gene3D G3DSA:3.30.450.20 1 100 2.0E-7 T 12-10-2018 AMJ96_CH01760 50738d14f65e334d79a4b4748f3e772f 510 PRINTS PR00344 Bacterial sensor protein C-terminal signature 483 496 4.4E-18 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH01760 50738d14f65e334d79a4b4748f3e772f 510 PRINTS PR00344 Bacterial sensor protein C-terminal signature 426 440 4.4E-18 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH01760 50738d14f65e334d79a4b4748f3e772f 510 PRINTS PR00344 Bacterial sensor protein C-terminal signature 459 477 4.4E-18 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH01760 50738d14f65e334d79a4b4748f3e772f 510 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 454 4.4E-18 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH01760 50738d14f65e334d79a4b4748f3e772f 510 Pfam PF00512 His Kinase A (phospho-acceptor) domain 278 345 5.5E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH02309 a0325af63f5d4024dedd63112829d5dd 126 SUPERFAMILY SSF117916 30 124 3.6E-32 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMJ96_CH02309 a0325af63f5d4024dedd63112829d5dd 126 TIGRFAM TIGR02945 SUF_assoc: FeS assembly SUF system protein 29 125 2.3E-46 T 12-10-2018 IPR014291 SUF system FeS cluster assembly associated AMJ96_CH02309 a0325af63f5d4024dedd63112829d5dd 126 Gene3D G3DSA:3.30.300.130 23 126 5.8E-35 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMJ96_CH02309 a0325af63f5d4024dedd63112829d5dd 126 Pfam PF01883 Iron-sulfur cluster assembly protein 31 103 2.7E-22 T 12-10-2018 IPR002744 MIP18 family-like AMJ96_CH01234 3c4471cafb7c44bf70bb2e32c182e7bd 299 SUPERFAMILY SSF53850 90 294 2.41E-42 T 12-10-2018 AMJ96_CH01234 3c4471cafb7c44bf70bb2e32c182e7bd 299 Gene3D G3DSA:3.40.190.10 93 289 2.2E-58 T 12-10-2018 AMJ96_CH01234 3c4471cafb7c44bf70bb2e32c182e7bd 299 SUPERFAMILY SSF46785 4 86 1.14E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01234 3c4471cafb7c44bf70bb2e32c182e7bd 299 Pfam PF03466 LysR substrate binding domain 89 291 2.1E-38 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH01234 3c4471cafb7c44bf70bb2e32c182e7bd 299 Gene3D G3DSA:3.40.190.10 161 262 2.2E-58 T 12-10-2018 AMJ96_CH01234 3c4471cafb7c44bf70bb2e32c182e7bd 299 Gene3D G3DSA:1.10.10.10 3 92 6.2E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01234 3c4471cafb7c44bf70bb2e32c182e7bd 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 2.7E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02531 ea567636dbc89805cc924a585b9a93a4 358 SUPERFAMILY SSF52440 7 136 3.07E-32 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMJ96_CH02531 ea567636dbc89805cc924a585b9a93a4 358 Gene3D G3DSA:3.30.470.20 127 351 1.5E-72 T 12-10-2018 AMJ96_CH02531 ea567636dbc89805cc924a585b9a93a4 358 Pfam PF01820 D-ala D-ala ligase N-terminus 9 128 1.4E-27 T 12-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH02531 ea567636dbc89805cc924a585b9a93a4 358 SUPERFAMILY SSF56059 138 347 3.89E-55 T 12-10-2018 AMJ96_CH02531 ea567636dbc89805cc924a585b9a93a4 358 Pfam PF07478 D-ala D-ala ligase C-terminus 145 347 1.5E-63 T 12-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH02531 ea567636dbc89805cc924a585b9a93a4 358 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 293 321 - T 12-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH02531 ea567636dbc89805cc924a585b9a93a4 358 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 8 351 39.875 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH02531 ea567636dbc89805cc924a585b9a93a4 358 PIRSF PIRSF039102 5 357 1.2E-102 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH02531 ea567636dbc89805cc924a585b9a93a4 358 Gene3D G3DSA:3.40.50.20 3 125 5.3E-33 T 12-10-2018 AMJ96_CH02531 ea567636dbc89805cc924a585b9a93a4 358 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 105 116 - T 12-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_CH02531 ea567636dbc89805cc924a585b9a93a4 358 Gene3D G3DSA:3.30.1490.20 153 220 1.5E-72 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMJ96_CH02531 ea567636dbc89805cc924a585b9a93a4 358 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 9 347 1.8E-96 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_PD00030 c177938a0e1633b44ea3eb28a5310fac 231 Gene3D G3DSA:3.90.79.10 12 157 5.5E-36 T 12-10-2018 AMJ96_PD00030 c177938a0e1633b44ea3eb28a5310fac 231 SUPERFAMILY SSF46785 157 227 2.72E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00030 c177938a0e1633b44ea3eb28a5310fac 231 Pfam PF00293 NUDIX domain 28 131 4.7E-11 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMJ96_PD00030 c177938a0e1633b44ea3eb28a5310fac 231 Gene3D G3DSA:1.10.10.10 158 231 8.3E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00030 c177938a0e1633b44ea3eb28a5310fac 231 SUPERFAMILY SSF55811 10 153 1.49E-28 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_CH01269 e1b05841f665cab2fb07beb0ee97aead 129 Pfam PF06059 Domain of Unknown Function (DUF930) 29 127 6.2E-37 T 12-10-2018 IPR009273 Protein of unknown function DUF930 AMJ96_PB00406 65286cb7c8215f289fd210bb395278d4 318 Gene3D G3DSA:3.40.190.10 90 293 1.5E-50 T 12-10-2018 AMJ96_PB00406 65286cb7c8215f289fd210bb395278d4 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 7.5E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PB00406 65286cb7c8215f289fd210bb395278d4 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 7.5E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PB00406 65286cb7c8215f289fd210bb395278d4 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 7.5E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PB00406 65286cb7c8215f289fd210bb395278d4 318 Pfam PF03466 LysR substrate binding domain 99 298 1.7E-9 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PB00406 65286cb7c8215f289fd210bb395278d4 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 2.7E-14 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PB00406 65286cb7c8215f289fd210bb395278d4 318 SUPERFAMILY SSF46785 3 80 2.56E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PB00406 65286cb7c8215f289fd210bb395278d4 318 SUPERFAMILY SSF53850 90 297 2.53E-41 T 12-10-2018 AMJ96_PB00406 65286cb7c8215f289fd210bb395278d4 318 Gene3D G3DSA:1.10.10.10 1 89 3.6E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PB00406 65286cb7c8215f289fd210bb395278d4 318 Gene3D G3DSA:3.40.190.10 170 269 1.5E-50 T 12-10-2018 AMJ96_CH01329 aceb24256e4537359b89c8019e7bc721 376 SUPERFAMILY SSF48452 140 349 2.74E-16 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01329 aceb24256e4537359b89c8019e7bc721 376 Pfam PF14559 Tetratricopeptide repeat 205 256 5.9E-6 T 12-10-2018 AMJ96_CH01329 aceb24256e4537359b89c8019e7bc721 376 Gene3D G3DSA:1.25.40.10 135 268 1.1E-19 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01329 aceb24256e4537359b89c8019e7bc721 376 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 2 116 9.0E-34 T 12-10-2018 IPR017560 Cytochrome c-type biogenesis protein CcmI AMJ96_CH02771 f997ef96a717c7e9db3ff40d0edd6759 335 Gene3D G3DSA:1.10.10.60 229 334 1.7E-25 T 12-10-2018 AMJ96_CH02771 f997ef96a717c7e9db3ff40d0edd6759 335 Pfam PF12833 Helix-turn-helix domain 254 333 5.9E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH02771 f997ef96a717c7e9db3ff40d0edd6759 335 SUPERFAMILY SSF46689 284 333 1.7E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02771 f997ef96a717c7e9db3ff40d0edd6759 335 SMART SM00342 248 331 5.7E-17 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH01707 982e5c639c5745654e895e61a84f2264 1402 Pfam PF04998 RNA polymerase Rpb1, domain 5 763 1310 5.8E-73 T 12-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01707 982e5c639c5745654e895e61a84f2264 1402 Gene3D G3DSA:1.10.274.100 563 640 7.9E-16 T 12-10-2018 AMJ96_CH01707 982e5c639c5745654e895e61a84f2264 1402 Gene3D G3DSA:1.10.40.90 376 418 6.5E-21 T 12-10-2018 AMJ96_CH01707 982e5c639c5745654e895e61a84f2264 1402 Pfam PF04997 RNA polymerase Rpb1, domain 1 16 344 2.0E-89 T 12-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01707 982e5c639c5745654e895e61a84f2264 1402 Pfam PF00623 RNA polymerase Rpb1, domain 2 346 487 2.5E-34 T 12-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01707 982e5c639c5745654e895e61a84f2264 1402 Gene3D G3DSA:1.10.132.30 641 787 1.8E-61 T 12-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01707 982e5c639c5745654e895e61a84f2264 1402 SMART SM00663 237 516 6.8E-180 T 12-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01707 982e5c639c5745654e895e61a84f2264 1402 Gene3D G3DSA:2.40.50.100 1019 1120 2.8E-23 T 12-10-2018 AMJ96_CH01707 982e5c639c5745654e895e61a84f2264 1402 Gene3D G3DSA:1.10.274.100 492 562 1.5E-20 T 12-10-2018 AMJ96_CH01707 982e5c639c5745654e895e61a84f2264 1402 Gene3D G3DSA:1.10.1790.20 1129 1309 1.0E-65 T 12-10-2018 AMJ96_CH01707 982e5c639c5745654e895e61a84f2264 1402 Gene3D G3DSA:2.40.50.100 1145 1210 1.0E-65 T 12-10-2018 AMJ96_CH01707 982e5c639c5745654e895e61a84f2264 1402 SUPERFAMILY SSF64484 17 1358 0.0 T 12-10-2018 AMJ96_CH01707 982e5c639c5745654e895e61a84f2264 1402 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 20 1018 0.0 T 12-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01707 982e5c639c5745654e895e61a84f2264 1402 Pfam PF04983 RNA polymerase Rpb1, domain 3 491 644 3.4E-26 T 12-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01707 982e5c639c5745654e895e61a84f2264 1402 Gene3D G3DSA:1.10.150.390 1311 1372 1.2E-26 T 12-10-2018 AMJ96_CH01707 982e5c639c5745654e895e61a84f2264 1402 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 13 1372 18.582 T 12-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01707 982e5c639c5745654e895e61a84f2264 1402 Pfam PF05000 RNA polymerase Rpb1, domain 4 673 759 3.2E-18 T 12-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AMJ96_CH01707 982e5c639c5745654e895e61a84f2264 1402 Gene3D G3DSA:2.40.50.100 944 1018 5.8E-23 T 12-10-2018 AMJ96_CH00355 ead24d123827c3a175f668557fe932d6 270 SUPERFAMILY SSF56235 2 250 9.44E-35 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMJ96_CH00355 ead24d123827c3a175f668557fe932d6 270 Pfam PF13230 Glutamine amidotransferases class-II 32 199 5.6E-17 T 12-10-2018 IPR026869 Putative glutamine amidotransferase type 2 AMJ96_CH00355 ead24d123827c3a175f668557fe932d6 270 Gene3D G3DSA:3.60.20.10 1 267 1.3E-92 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMJ96_CH04296 48452ec719badf8efd4ac6995405702e 302 SUPERFAMILY SSF55681 11 301 2.68E-25 T 12-10-2018 AMJ96_CH04296 48452ec719badf8efd4ac6995405702e 302 Gene3D G3DSA:3.30.930.10 7 301 5.9E-92 T 12-10-2018 AMJ96_CH04283 3d45f73c19ac27592cc6100d7eeb273c 618 Pfam PF06472 ABC transporter transmembrane region 2 37 312 3.0E-33 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_CH04283 3d45f73c19ac27592cc6100d7eeb273c 618 Gene3D G3DSA:1.20.1560.10 35 365 4.0E-7 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH04283 3d45f73c19ac27592cc6100d7eeb273c 618 Gene3D G3DSA:3.40.50.300 390 611 6.7E-18 T 12-10-2018 AMJ96_CH04283 3d45f73c19ac27592cc6100d7eeb273c 618 SUPERFAMILY SSF52540 407 568 5.09E-13 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04283 3d45f73c19ac27592cc6100d7eeb273c 618 SUPERFAMILY SSF90123 46 358 4.45E-18 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_PD00181 57361116eb99ef0133e5c2543f02aec9 387 Pfam PF00072 Response regulator receiver domain 13 95 3.5E-6 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00181 57361116eb99ef0133e5c2543f02aec9 387 SUPERFAMILY SSF52172 12 122 8.11E-13 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PD00181 57361116eb99ef0133e5c2543f02aec9 387 SUPERFAMILY SSF46785 271 343 5.78E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00181 57361116eb99ef0133e5c2543f02aec9 387 Gene3D G3DSA:1.10.10.10 270 340 2.4E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00181 57361116eb99ef0133e5c2543f02aec9 387 SUPERFAMILY SSF51206 133 246 1.44E-11 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like AMJ96_PD00181 57361116eb99ef0133e5c2543f02aec9 387 Pfam PF13545 Crp-like helix-turn-helix domain 274 338 8.7E-12 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00181 57361116eb99ef0133e5c2543f02aec9 387 Gene3D G3DSA:2.60.120.10 132 265 3.2E-7 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PD00181 57361116eb99ef0133e5c2543f02aec9 387 Gene3D G3DSA:3.40.50.2300 9 129 4.1E-33 T 12-10-2018 AMJ96_PD00598 86f73c8052287eb223bf6695c5a913c2 156 Gene3D G3DSA:3.30.450.150 1 156 9.1E-45 T 12-10-2018 IPR038084 GlcG-like domain superfamily AMJ96_PD00598 86f73c8052287eb223bf6695c5a913c2 156 Pfam PF03928 Haem-degrading 22 149 8.5E-29 T 12-10-2018 IPR005624 Haem-degrading AMJ96_PD00598 86f73c8052287eb223bf6695c5a913c2 156 PIRSF PIRSF008757 1 156 1.0E-47 T 12-10-2018 IPR010371 Uncharacterised protein family UPF0303 AMJ96_PD00598 86f73c8052287eb223bf6695c5a913c2 156 SUPERFAMILY SSF143744 17 152 3.4E-25 T 12-10-2018 IPR038084 GlcG-like domain superfamily AMJ96_PD00248 36bacf86ed83ddc1775f439329c86bab 384 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 12 366 2.6E-104 T 12-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMJ96_PD00248 36bacf86ed83ddc1775f439329c86bab 384 PIRSF PIRSF000267 7 383 2.8E-119 T 12-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMJ96_PD00248 36bacf86ed83ddc1775f439329c86bab 384 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 7 383 3.3E-135 T 12-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AMJ96_CH03201 8199751b525387fa7c3926d0dc74d295 618 Gene3D G3DSA:3.40.50.300 351 613 9.9E-90 T 12-10-2018 AMJ96_CH03201 8199751b525387fa7c3926d0dc74d295 618 Gene3D G3DSA:1.20.1560.10 6 344 2.0E-27 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH03201 8199751b525387fa7c3926d0dc74d295 618 SMART SM00382 386 577 6.2E-20 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03201 8199751b525387fa7c3926d0dc74d295 618 Pfam PF00005 ABC transporter 378 531 2.2E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03201 8199751b525387fa7c3926d0dc74d295 618 SUPERFAMILY SSF90123 22 340 2.35E-50 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH03201 8199751b525387fa7c3926d0dc74d295 618 ProSitePatterns PS00211 ABC transporters family signature. 503 517 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03201 8199751b525387fa7c3926d0dc74d295 618 Pfam PF00664 ABC transporter transmembrane region 42 305 2.4E-12 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_CH03201 8199751b525387fa7c3926d0dc74d295 618 SUPERFAMILY SSF52540 350 601 5.74E-87 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00301 bf2dd8e47e7012a3e357ed81ecf6ba55 331 TIGRFAM TIGR02637 RhaS: rhamnose ABC transporter, rhamnose-binding protein 29 329 1.1E-154 T 12-10-2018 IPR013459 Rhamnose ABC transporter, substrate-binding protein RhaS GO:0015762 AMJ96_PC00301 bf2dd8e47e7012a3e357ed81ecf6ba55 331 SUPERFAMILY SSF53822 25 327 6.13E-76 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PC00301 bf2dd8e47e7012a3e357ed81ecf6ba55 331 Pfam PF13407 Periplasmic binding protein domain 29 286 4.2E-65 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_PC00301 bf2dd8e47e7012a3e357ed81ecf6ba55 331 Gene3D G3DSA:3.40.50.2300 130 327 3.4E-111 T 12-10-2018 AMJ96_PC00301 bf2dd8e47e7012a3e357ed81ecf6ba55 331 Gene3D G3DSA:3.40.50.2300 28 313 3.4E-111 T 12-10-2018 AMJ96_CH01826 9602b18b86807e2a0bcf2b5f9c054f72 245 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 189 233 4.0E-10 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMJ96_CH01826 9602b18b86807e2a0bcf2b5f9c054f72 245 SUPERFAMILY SSF50447 4 93 8.47E-13 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMJ96_CH01826 9602b18b86807e2a0bcf2b5f9c054f72 245 Gene3D G3DSA:3.30.980.10 94 244 1.3E-27 T 12-10-2018 AMJ96_CH01826 9602b18b86807e2a0bcf2b5f9c054f72 245 SMART SM00863 189 235 2.6E-9 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 AMJ96_CH01826 9602b18b86807e2a0bcf2b5f9c054f72 245 Pfam PF01411 tRNA synthetases class II (A) 24 96 1.6E-8 T 12-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 AMJ96_CH01826 9602b18b86807e2a0bcf2b5f9c054f72 245 Gene3D G3DSA:2.40.30.130 1 90 5.8E-16 T 12-10-2018 AMJ96_CH01826 9602b18b86807e2a0bcf2b5f9c054f72 245 SUPERFAMILY SSF55186 97 238 1.96E-28 T 12-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 AMJ96_PA00259 49364e09e4726eef1dfe3beb50935817 141 SUPERFAMILY SSF51230 63 138 8.42E-7 T 12-10-2018 IPR011053 Single hybrid motif AMJ96_PA00259 49364e09e4726eef1dfe3beb50935817 141 Gene3D G3DSA:2.40.50.100 60 137 7.9E-6 T 12-10-2018 AMJ96_PA00147 d460a88cebf230830a9e536feaa62424 450 Gene3D G3DSA:3.80.30.20 1 359 3.7E-103 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMJ96_PA00147 d460a88cebf230830a9e536feaa62424 450 PIRSF PIRSF000167 1 450 3.2E-166 T 12-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 AMJ96_PA00147 d460a88cebf230830a9e536feaa62424 450 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 4 440 7.3E-131 T 12-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 AMJ96_PA00147 d460a88cebf230830a9e536feaa62424 450 Pfam PF06969 HemN C-terminal domain 359 426 4.4E-9 T 12-10-2018 IPR010723 HemN, C-terminal AMJ96_PA00147 d460a88cebf230830a9e536feaa62424 450 SMART SM00729 47 268 7.3E-48 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMJ96_PA00147 d460a88cebf230830a9e536feaa62424 450 SUPERFAMILY SSF102114 10 439 7.19E-118 T 12-10-2018 AMJ96_PA00147 d460a88cebf230830a9e536feaa62424 450 Pfam PF04055 Radical SAM superfamily 53 224 1.8E-20 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMJ96_PA00147 d460a88cebf230830a9e536feaa62424 450 Gene3D G3DSA:1.10.10.920 360 449 2.7E-15 T 12-10-2018 AMJ96_CH02260 390866277c84b302e0a244816e26e70b 204 SUPERFAMILY SSF55620 13 202 3.41E-80 T 12-10-2018 AMJ96_CH02260 390866277c84b302e0a244816e26e70b 204 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 81 97 - T 12-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMJ96_CH02260 390866277c84b302e0a244816e26e70b 204 Gene3D G3DSA:3.30.1130.10 71 204 3.3E-57 T 12-10-2018 AMJ96_CH02260 390866277c84b302e0a244816e26e70b 204 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 24 202 6.6E-68 T 12-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMJ96_CH02260 390866277c84b302e0a244816e26e70b 204 Pfam PF01227 GTP cyclohydrolase I 24 201 2.6E-78 T 12-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMJ96_CH02260 390866277c84b302e0a244816e26e70b 204 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 19 202 40.869 T 12-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AMJ96_CH02260 390866277c84b302e0a244816e26e70b 204 Gene3D G3DSA:1.10.286.10 9 67 3.3E-20 T 12-10-2018 AMJ96_CH00552 53ff3f9c7c10a63295c5aa7bcd17234c 215 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00552 53ff3f9c7c10a63295c5aa7bcd17234c 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 1.3E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00552 53ff3f9c7c10a63295c5aa7bcd17234c 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 1.3E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00552 53ff3f9c7c10a63295c5aa7bcd17234c 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 1.3E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00552 53ff3f9c7c10a63295c5aa7bcd17234c 215 SUPERFAMILY SSF52172 1 175 7.78E-26 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH00552 53ff3f9c7c10a63295c5aa7bcd17234c 215 SMART SM00448 4 118 1.0E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00552 53ff3f9c7c10a63295c5aa7bcd17234c 215 SMART SM00421 149 206 1.2E-20 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00552 53ff3f9c7c10a63295c5aa7bcd17234c 215 Pfam PF00072 Response regulator receiver domain 6 118 5.5E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00552 53ff3f9c7c10a63295c5aa7bcd17234c 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 204 5.5E-19 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00552 53ff3f9c7c10a63295c5aa7bcd17234c 215 Gene3D G3DSA:3.40.50.12740 5 210 1.5E-47 T 12-10-2018 AMJ96_CH00526 2ef8a3b1710976e1d6b4ff6f1c46df7f 493 Pfam PF12501 Phosphate ATP-binding cassette transporter 7 171 2.6E-53 T 12-10-2018 IPR022182 ABC transporter phosphate permease PstC, N-terminal domain GO:0006817 AMJ96_CH00526 2ef8a3b1710976e1d6b4ff6f1c46df7f 493 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 189 488 9.1E-86 T 12-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 AMJ96_CH00526 2ef8a3b1710976e1d6b4ff6f1c46df7f 493 Gene3D G3DSA:1.10.3720.10 252 491 8.0E-35 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00526 2ef8a3b1710976e1d6b4ff6f1c46df7f 493 SUPERFAMILY SSF161098 242 479 3.53E-32 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00526 2ef8a3b1710976e1d6b4ff6f1c46df7f 493 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 275 489 1.1E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03947 80257936c831a5b5f952b395c81c93ab 259 Gene3D G3DSA:3.40.50.720 1 257 2.1E-79 T 12-10-2018 AMJ96_CH03947 80257936c831a5b5f952b395c81c93ab 259 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 144 7.5E-4 T 12-10-2018 AMJ96_CH03947 80257936c831a5b5f952b395c81c93ab 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 5.0E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03947 80257936c831a5b5f952b395c81c93ab 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 5.0E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03947 80257936c831a5b5f952b395c81c93ab 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 5.0E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03947 80257936c831a5b5f952b395c81c93ab 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.0E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03947 80257936c831a5b5f952b395c81c93ab 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 5.0E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03947 80257936c831a5b5f952b395c81c93ab 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 5.0E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03947 80257936c831a5b5f952b395c81c93ab 259 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 252 6.7E-60 T 12-10-2018 AMJ96_CH03947 80257936c831a5b5f952b395c81c93ab 259 SUPERFAMILY SSF51735 6 252 2.84E-78 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03947 80257936c831a5b5f952b395c81c93ab 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 5.9E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03947 80257936c831a5b5f952b395c81c93ab 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 5.9E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03947 80257936c831a5b5f952b395c81c93ab 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 5.9E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00204 5cc812122d370582846c8be8d1e55fdf 498 SMART SM00382 31 220 8.1E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00204 5cc812122d370582846c8be8d1e55fdf 498 SMART SM00382 279 473 15.0 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00204 5cc812122d370582846c8be8d1e55fdf 498 SUPERFAMILY SSF52540 6 231 9.08E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00204 5cc812122d370582846c8be8d1e55fdf 498 Gene3D G3DSA:3.40.50.300 1 241 1.3E-60 T 12-10-2018 AMJ96_PA00204 5cc812122d370582846c8be8d1e55fdf 498 Pfam PF00005 ABC transporter 22 172 5.3E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00204 5cc812122d370582846c8be8d1e55fdf 498 Gene3D G3DSA:3.40.50.300 270 497 1.0E-33 T 12-10-2018 AMJ96_PA00204 5cc812122d370582846c8be8d1e55fdf 498 Pfam PF00005 ABC transporter 272 425 9.2E-11 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00204 5cc812122d370582846c8be8d1e55fdf 498 ProSitePatterns PS00211 ABC transporters family signature. 397 411 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PA00204 5cc812122d370582846c8be8d1e55fdf 498 SUPERFAMILY SSF52540 271 483 3.73E-33 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00782 01049d15fc2633e186618e7f18044a61 166 Gene3D G3DSA:1.20.120.1630 3 163 1.6E-14 T 12-10-2018 AMJ96_CH00782 01049d15fc2633e186618e7f18044a61 166 Pfam PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family 70 160 1.8E-24 T 12-10-2018 IPR007269 Isoprenylcysteine carboxyl methyltransferase GO:0004671|GO:0006481|GO:0016021 Reactome: R-HSA-163841 AMJ96_CH03278 5b435f8a053f2053622669775b261909 779 SUPERFAMILY SSF56003 139 775 1.1E-205 T 12-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 AMJ96_CH03278 5b435f8a053f2053622669775b261909 779 Gene3D G3DSA:3.30.365.10 140 772 6.7E-281 T 12-10-2018 AMJ96_CH03278 5b435f8a053f2053622669775b261909 779 Gene3D G3DSA:3.30.365.10 188 282 6.7E-281 T 12-10-2018 AMJ96_CH03278 5b435f8a053f2053622669775b261909 779 Gene3D G3DSA:3.30.365.10 461 607 6.7E-281 T 12-10-2018 AMJ96_CH03278 5b435f8a053f2053622669775b261909 779 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 31 139 2.3E-30 T 12-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMJ96_CH03278 5b435f8a053f2053622669775b261909 779 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 161 705 2.0E-194 T 12-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 AMJ96_CH03278 5b435f8a053f2053622669775b261909 779 Gene3D G3DSA:3.30.365.10 154 409 6.7E-281 T 12-10-2018 AMJ96_CH03278 5b435f8a053f2053622669775b261909 779 SMART SM01008 31 139 6.0E-50 T 12-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMJ96_CH03278 5b435f8a053f2053622669775b261909 779 Gene3D G3DSA:3.90.1170.50 20 139 6.7E-281 T 12-10-2018 AMJ96_CH03278 5b435f8a053f2053622669775b261909 779 SUPERFAMILY SSF54665 18 139 6.93E-41 T 12-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily AMJ96_CH03278 5b435f8a053f2053622669775b261909 779 TIGRFAM TIGR02965 xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit 18 777 0.0 T 12-10-2018 IPR014309 Xanthine dehydrogenase, molybdopterin binding subunit GO:0030151 KEGG: 00230+1.17.1.4+1.17.3.2|KEGG: 00232+1.17.3.2|KEGG: 00983+1.17.3.2|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 AMJ96_CH04016 f7f0289a05822555183476acf50d0650 326 PRINTS PR00069 Aldo-keto reductase signature 113 131 8.4E-7 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH04016 f7f0289a05822555183476acf50d0650 326 PRINTS PR00069 Aldo-keto reductase signature 47 71 8.4E-7 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH04016 f7f0289a05822555183476acf50d0650 326 PRINTS PR00069 Aldo-keto reductase signature 144 161 8.4E-7 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH04016 f7f0289a05822555183476acf50d0650 326 Pfam PF00248 Aldo/keto reductase family 15 315 4.5E-77 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_CH04016 f7f0289a05822555183476acf50d0650 326 SUPERFAMILY SSF51430 1 320 1.7E-106 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH04016 f7f0289a05822555183476acf50d0650 326 Gene3D G3DSA:3.20.20.100 1 323 1.3E-123 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH04049 856877c748223e9b057ca9debb6a2b00 265 Pfam PF01553 Acyltransferase 59 183 6.8E-20 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMJ96_CH04049 856877c748223e9b057ca9debb6a2b00 265 SMART SM00563 72 186 3.6E-25 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMJ96_CH04049 856877c748223e9b057ca9debb6a2b00 265 SUPERFAMILY SSF69593 14 212 7.06E-36 T 12-10-2018 AMJ96_CH00198 273caf9fa784be8b7957662c83302c13 268 TIGRFAM TIGR01698 PUNP: purine nucleotide phosphorylase 19 262 3.9E-111 T 12-10-2018 IPR011269 Putative purine nucleotide phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 AMJ96_CH00198 273caf9fa784be8b7957662c83302c13 268 Pfam PF01048 Phosphorylase superfamily 18 262 4.9E-50 T 12-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AMJ96_CH00198 273caf9fa784be8b7957662c83302c13 268 SUPERFAMILY SSF53167 3 261 3.01E-84 T 12-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 AMJ96_CH00198 273caf9fa784be8b7957662c83302c13 268 Gene3D G3DSA:3.40.50.1580 1 264 1.3E-95 T 12-10-2018 AMJ96_CH00198 273caf9fa784be8b7957662c83302c13 268 PIRSF PIRSF000477 1 263 2.1E-87 T 12-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 AMJ96_CH00198 273caf9fa784be8b7957662c83302c13 268 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 20 262 4.6E-100 T 12-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 AMJ96_CH00678 08349981076a48642a6729c618b81813 758 Gene3D G3DSA:1.10.287.560 358 421 6.5E-16 T 12-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 AMJ96_CH00678 08349981076a48642a6729c618b81813 758 Gene3D G3DSA:2.40.50.180 630 695 3.5E-33 T 12-10-2018 AMJ96_CH00678 08349981076a48642a6729c618b81813 758 Pfam PF01584 CheW-like domain 612 741 6.4E-22 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMJ96_CH00678 08349981076a48642a6729c618b81813 758 Gene3D G3DSA:1.20.120.160 1 142 1.3E-37 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMJ96_CH00678 08349981076a48642a6729c618b81813 758 Pfam PF01627 Hpt domain 5 95 9.7E-19 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMJ96_CH00678 08349981076a48642a6729c618b81813 758 SMART SM00387 466 607 5.7E-28 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00678 08349981076a48642a6729c618b81813 758 SUPERFAMILY SSF55874 425 605 3.01E-37 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00678 08349981076a48642a6729c618b81813 758 SUPERFAMILY SSF47384 359 422 9.81E-14 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH00678 08349981076a48642a6729c618b81813 758 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 359 421 1.8E-17 T 12-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AMJ96_CH00678 08349981076a48642a6729c618b81813 758 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 469 606 9.4E-19 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00678 08349981076a48642a6729c618b81813 758 SUPERFAMILY SSF47226 2 127 6.67E-30 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 AMJ96_CH00678 08349981076a48642a6729c618b81813 758 Gene3D G3DSA:2.30.30.40 607 736 3.5E-33 T 12-10-2018 AMJ96_CH00678 08349981076a48642a6729c618b81813 758 SUPERFAMILY SSF50341 606 739 5.1E-26 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMJ96_CH00678 08349981076a48642a6729c618b81813 758 SMART SM00073 3 100 1.9E-35 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 AMJ96_CH00678 08349981076a48642a6729c618b81813 758 Gene3D G3DSA:3.30.565.10 422 606 2.1E-57 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00678 08349981076a48642a6729c618b81813 758 SMART SM00260 599 740 5.6E-41 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMJ96_CH00678 08349981076a48642a6729c618b81813 758 SMART SM01231 358 421 2.9E-18 T 12-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AMJ96_CH00678 08349981076a48642a6729c618b81813 758 PRINTS PR00344 Bacterial sensor protein C-terminal signature 567 585 2.4E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00678 08349981076a48642a6729c618b81813 758 PRINTS PR00344 Bacterial sensor protein C-terminal signature 591 604 2.4E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00678 08349981076a48642a6729c618b81813 758 PRINTS PR00344 Bacterial sensor protein C-terminal signature 511 525 2.4E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00678 08349981076a48642a6729c618b81813 758 PRINTS PR00344 Bacterial sensor protein C-terminal signature 551 561 2.4E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00037 5d75b51a1bff95256db5f79385eec6ba 536 Pfam PF01293 Phosphoenolpyruvate carboxykinase 23 482 3.3E-212 T 12-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AMJ96_CH00037 5d75b51a1bff95256db5f79385eec6ba 536 Gene3D G3DSA:3.40.449.10 33 216 1.6E-217 T 12-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AMJ96_CH00037 5d75b51a1bff95256db5f79385eec6ba 536 SUPERFAMILY SSF68923 9 215 2.27E-78 T 12-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AMJ96_CH00037 5d75b51a1bff95256db5f79385eec6ba 536 PIRSF PIRSF006294 6 531 7.3E-225 T 12-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AMJ96_CH00037 5d75b51a1bff95256db5f79385eec6ba 536 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 17 531 55.108 T 12-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AMJ96_CH00037 5d75b51a1bff95256db5f79385eec6ba 536 Gene3D G3DSA:2.170.8.10 43 333 1.6E-217 T 12-10-2018 AMJ96_CH00037 5d75b51a1bff95256db5f79385eec6ba 536 Gene3D G3DSA:3.90.228.20 217 516 1.6E-217 T 12-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AMJ96_CH00037 5d75b51a1bff95256db5f79385eec6ba 536 SUPERFAMILY SSF53795 216 529 2.38E-135 T 12-10-2018 AMJ96_CH00037 5d75b51a1bff95256db5f79385eec6ba 536 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 12 529 1.5E-204 T 12-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AMJ96_CH00037 5d75b51a1bff95256db5f79385eec6ba 536 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 253 268 - T 12-10-2018 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AMJ96_PA00127 5906c874f7102ca0f7e1846c75f3995a 522 SUPERFAMILY SSF54862 114 333 2.6E-27 T 12-10-2018 AMJ96_PA00127 5906c874f7102ca0f7e1846c75f3995a 522 Pfam PF13746 4Fe-4S dicluster domain 228 332 5.6E-43 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMJ96_PA00127 5906c874f7102ca0f7e1846c75f3995a 522 Pfam PF12801 4Fe-4S binding domain 106 139 1.2E-7 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMJ96_PA00127 5906c874f7102ca0f7e1846c75f3995a 522 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 281 292 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMJ96_PA00127 5906c874f7102ca0f7e1846c75f3995a 522 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 45 508 1.2E-161 T 12-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 AMJ96_PA00127 5906c874f7102ca0f7e1846c75f3995a 522 Gene3D G3DSA:2.60.40.10 396 517 4.0E-12 T 12-10-2018 IPR013783 Immunoglobulin-like fold AMJ96_PA00127 5906c874f7102ca0f7e1846c75f3995a 522 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 395 516 1.7E-21 T 12-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain AMJ96_PD00450 77e7c6c9af3323391ff365850f0ac5a6 314 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 15 171 1.3E-43 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMJ96_PD00450 77e7c6c9af3323391ff365850f0ac5a6 314 SUPERFAMILY SSF48179 176 301 5.89E-37 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_PD00450 77e7c6c9af3323391ff365850f0ac5a6 314 SUPERFAMILY SSF51735 15 172 4.73E-42 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00450 77e7c6c9af3323391ff365850f0ac5a6 314 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 16 29 - T 12-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMJ96_PD00450 77e7c6c9af3323391ff365850f0ac5a6 314 PIRSF PIRSF000103 7 304 4.9E-71 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMJ96_PD00450 77e7c6c9af3323391ff365850f0ac5a6 314 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 176 296 5.6E-39 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMJ96_PD00450 77e7c6c9af3323391ff365850f0ac5a6 314 Gene3D G3DSA:3.40.50.720 10 173 7.0E-50 T 12-10-2018 AMJ96_PD00450 77e7c6c9af3323391ff365850f0ac5a6 314 Gene3D G3DSA:1.10.1040.10 174 302 4.6E-42 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMJ96_CH02127 88854fdfdbf85d818c82596f053f10d6 349 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 168 340 2.7E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02127 88854fdfdbf85d818c82596f053f10d6 349 SUPERFAMILY SSF161098 16 349 3.19E-67 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PB00072 ea363973b3dad9ca0a55ef4a18280292 105 Pfam PF00589 Phage integrase family 30 89 3.4E-13 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMJ96_PB00072 ea363973b3dad9ca0a55ef4a18280292 105 SUPERFAMILY SSF56349 20 96 4.12E-18 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMJ96_PB00072 ea363973b3dad9ca0a55ef4a18280292 105 Gene3D G3DSA:1.10.443.10 5 97 1.1E-16 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 PRINTS PR00344 Bacterial sensor protein C-terminal signature 753 767 7.7E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 PRINTS PR00344 Bacterial sensor protein C-terminal signature 812 825 7.7E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 PRINTS PR00344 Bacterial sensor protein C-terminal signature 771 781 7.7E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 PRINTS PR00344 Bacterial sensor protein C-terminal signature 788 806 7.7E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 Pfam PF00512 His Kinase A (phospho-acceptor) domain 600 665 3.2E-20 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 SMART SM00388 600 665 1.0E-24 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 Gene3D G3DSA:3.30.565.10 667 831 1.0E-50 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 Pfam PF00072 Response regulator receiver domain 1010 1123 9.3E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 Pfam PF00072 Response regulator receiver domain 847 962 5.1E-15 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 SUPERFAMILY SSF55785 485 589 3.66E-6 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 Gene3D G3DSA:1.10.287.130 590 666 3.0E-26 T 12-10-2018 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 SUPERFAMILY SSF55785 199 311 1.22E-17 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 Gene3D G3DSA:3.30.450.20 325 455 7.0E-7 T 12-10-2018 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 SUPERFAMILY SSF52172 843 985 2.7E-29 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 Pfam PF12860 PAS fold 475 584 3.4E-10 T 12-10-2018 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 Pfam PF12860 PAS fold 339 452 7.0E-9 T 12-10-2018 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 SMART SM00091 9 75 1.9 T 12-10-2018 IPR000014 PAS domain AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 SMART SM00091 332 399 6.9E-4 T 12-10-2018 IPR000014 PAS domain AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 SMART SM00091 467 534 14.0 T 12-10-2018 IPR000014 PAS domain AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 SMART SM00091 200 266 8.1E-5 T 12-10-2018 IPR000014 PAS domain AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 Gene3D G3DSA:3.30.450.20 203 324 6.0E-18 T 12-10-2018 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 SUPERFAMILY SSF55785 309 386 3.62E-8 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 Gene3D G3DSA:3.30.450.20 14 115 1.7E-5 T 12-10-2018 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 712 826 2.8E-29 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 SUPERFAMILY SSF52172 1009 1135 8.11E-36 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 200 320 9.1E-12 T 12-10-2018 IPR000014 PAS domain AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 Pfam PF08448 PAS fold 206 312 6.7E-8 T 12-10-2018 IPR013656 PAS fold-4 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 Pfam PF13426 PAS domain 25 82 0.057 T 12-10-2018 IPR000014 PAS domain AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 SUPERFAMILY SSF55874 654 826 2.36E-45 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 SUPERFAMILY SSF47384 585 667 1.1E-22 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 Gene3D G3DSA:3.40.50.12740 1008 1138 8.6E-41 T 12-10-2018 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 Gene3D G3DSA:3.40.50.12740 844 1007 1.9E-31 T 12-10-2018 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 Gene3D G3DSA:3.30.450.20 456 589 4.0E-8 T 12-10-2018 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 SMART SM00387 712 828 5.2E-36 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 SMART SM00448 1008 1123 5.8E-34 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03302 fb142ccf6136b9810b4e0ee2022accd2 1139 SMART SM00448 845 963 1.7E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH04122 02a56c1f5ea7d6e2d61444e1abeed8b1 188 PRINTS PR00125 ATP synthase delta subunit signature 13 32 3.8E-28 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04122 02a56c1f5ea7d6e2d61444e1abeed8b1 188 PRINTS PR00125 ATP synthase delta subunit signature 94 108 3.8E-28 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04122 02a56c1f5ea7d6e2d61444e1abeed8b1 188 PRINTS PR00125 ATP synthase delta subunit signature 159 177 3.8E-28 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04122 02a56c1f5ea7d6e2d61444e1abeed8b1 188 PRINTS PR00125 ATP synthase delta subunit signature 144 159 3.8E-28 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04122 02a56c1f5ea7d6e2d61444e1abeed8b1 188 PRINTS PR00125 ATP synthase delta subunit signature 83 94 3.8E-28 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04122 02a56c1f5ea7d6e2d61444e1abeed8b1 188 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 146 165 - T 12-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04122 02a56c1f5ea7d6e2d61444e1abeed8b1 188 Hamap MF_01416 ATP synthase subunit delta [atpD]. 9 186 20.047 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04122 02a56c1f5ea7d6e2d61444e1abeed8b1 188 Gene3D G3DSA:1.10.520.20 12 107 8.0E-21 T 12-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04122 02a56c1f5ea7d6e2d61444e1abeed8b1 188 Pfam PF00213 ATP synthase delta (OSCP) subunit 13 184 5.1E-51 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04122 02a56c1f5ea7d6e2d61444e1abeed8b1 188 SUPERFAMILY SSF47928 11 115 9.68E-26 T 12-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04122 02a56c1f5ea7d6e2d61444e1abeed8b1 188 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 13 183 2.1E-37 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH04153 f60b35f06d421471b2b93a0fbf4e46ba 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 105 124 3.7E-45 T 12-10-2018 IPR017861 Kae1/TsaD family AMJ96_CH04153 f60b35f06d421471b2b93a0fbf4e46ba 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 138 150 3.7E-45 T 12-10-2018 IPR017861 Kae1/TsaD family AMJ96_CH04153 f60b35f06d421471b2b93a0fbf4e46ba 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 161 182 3.7E-45 T 12-10-2018 IPR017861 Kae1/TsaD family AMJ96_CH04153 f60b35f06d421471b2b93a0fbf4e46ba 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 84 104 3.7E-45 T 12-10-2018 IPR017861 Kae1/TsaD family AMJ96_CH04153 f60b35f06d421471b2b93a0fbf4e46ba 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 8 21 3.7E-45 T 12-10-2018 IPR017861 Kae1/TsaD family AMJ96_CH04153 f60b35f06d421471b2b93a0fbf4e46ba 365 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 279 288 3.7E-45 T 12-10-2018 IPR017861 Kae1/TsaD family AMJ96_CH04153 f60b35f06d421471b2b93a0fbf4e46ba 365 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 8 322 3.8E-100 T 12-10-2018 IPR017861 Kae1/TsaD family AMJ96_CH04153 f60b35f06d421471b2b93a0fbf4e46ba 365 Gene3D G3DSA:3.30.420.40 7 330 1.6E-122 T 12-10-2018 AMJ96_CH04153 f60b35f06d421471b2b93a0fbf4e46ba 365 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 5 348 64.111 T 12-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 AMJ96_CH04153 f60b35f06d421471b2b93a0fbf4e46ba 365 SUPERFAMILY SSF53067 6 326 3.89E-41 T 12-10-2018 AMJ96_CH04153 f60b35f06d421471b2b93a0fbf4e46ba 365 Gene3D G3DSA:3.30.420.40 136 309 1.6E-122 T 12-10-2018 AMJ96_CH04153 f60b35f06d421471b2b93a0fbf4e46ba 365 Pfam PF00814 Glycoprotease family 32 323 3.7E-101 T 12-10-2018 IPR000905 Gcp-like domain AMJ96_CH04153 f60b35f06d421471b2b93a0fbf4e46ba 365 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 7 329 4.0E-128 T 12-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 AMJ96_CH01357 80a914f40b9055a555837fb6bc8ff499 455 Gene3D G3DSA:3.40.640.10 68 343 8.9E-172 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH01357 80a914f40b9055a555837fb6bc8ff499 455 SUPERFAMILY SSF53383 14 446 1.2E-116 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH01357 80a914f40b9055a555837fb6bc8ff499 455 Gene3D G3DSA:3.90.1150.10 14 447 8.9E-172 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH01357 80a914f40b9055a555837fb6bc8ff499 455 PIRSF PIRSF000521 11 448 8.8E-20 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH01357 80a914f40b9055a555837fb6bc8ff499 455 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 256 293 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH01357 80a914f40b9055a555837fb6bc8ff499 455 Pfam PF00202 Aminotransferase class-III 34 444 2.8E-82 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH02274 d665b512b72d3ac687a7f0ff9e1202b5 254 Pfam PF04654 Protein of unknown function, DUF599 7 219 3.4E-54 T 12-10-2018 IPR006747 Protein of unknown function DUF599 AMJ96_PA00214 ceb58c129138f9553fca1d01e82b35a5 461 Gene3D G3DSA:3.30.450.20 30 202 1.2E-44 T 12-10-2018 AMJ96_PA00214 ceb58c129138f9553fca1d01e82b35a5 461 PIRSF PIRSF037314 1 461 4.4E-201 T 12-10-2018 IPR017171 Signal transduction histidine kinase, MctS AMJ96_PA00214 ceb58c129138f9553fca1d01e82b35a5 461 Pfam PF07730 Histidine kinase 250 317 6.1E-17 T 12-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMJ96_PA00214 ceb58c129138f9553fca1d01e82b35a5 461 Gene3D G3DSA:3.30.565.10 323 449 2.5E-27 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PA00214 ceb58c129138f9553fca1d01e82b35a5 461 Pfam PF17200 Single Cache domain 2 46 187 5.9E-40 T 12-10-2018 IPR033480 Single Cache domain 2 AMJ96_PA00214 ceb58c129138f9553fca1d01e82b35a5 461 SMART SM00387 355 450 1.8E-7 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PA00214 ceb58c129138f9553fca1d01e82b35a5 461 SMART SM01049 42 133 1.1E-28 T 12-10-2018 IPR033480 Single Cache domain 2 AMJ96_PA00214 ceb58c129138f9553fca1d01e82b35a5 461 SUPERFAMILY SSF55874 320 447 6.94E-16 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PB00130 c1e289be92c6d4eb3b861251fab967d2 142 SUPERFAMILY SSF69118 21 139 2.45E-34 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_PB00130 c1e289be92c6d4eb3b861251fab967d2 142 Pfam PF02627 Carboxymuconolactone decarboxylase family 53 134 1.5E-19 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMJ96_PB00130 c1e289be92c6d4eb3b861251fab967d2 142 Gene3D G3DSA:1.20.1290.10 20 141 7.5E-36 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_PB00134 12e02e9ed95f50b7108171180b2a11dc 517 ProSitePatterns PS00211 ABC transporters family signature. 405 419 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PB00134 12e02e9ed95f50b7108171180b2a11dc 517 SMART SM00382 31 217 1.6E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PB00134 12e02e9ed95f50b7108171180b2a11dc 517 SMART SM00382 282 497 2.5 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PB00134 12e02e9ed95f50b7108171180b2a11dc 517 Gene3D G3DSA:3.40.50.300 265 503 1.7E-25 T 12-10-2018 AMJ96_PB00134 12e02e9ed95f50b7108171180b2a11dc 517 SUPERFAMILY SSF52540 257 491 2.2E-28 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PB00134 12e02e9ed95f50b7108171180b2a11dc 517 Pfam PF00005 ABC transporter 22 168 1.0E-22 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PB00134 12e02e9ed95f50b7108171180b2a11dc 517 Pfam PF00005 ABC transporter 277 432 6.8E-11 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PB00134 12e02e9ed95f50b7108171180b2a11dc 517 SUPERFAMILY SSF52540 4 229 2.28E-50 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PB00134 12e02e9ed95f50b7108171180b2a11dc 517 Gene3D G3DSA:3.40.50.300 1 245 3.5E-51 T 12-10-2018 AMJ96_CH01278 78c7e99d39674d5fffdb1dd39814538b 233 Gene3D G3DSA:2.160.20.100 105 233 7.3E-20 T 12-10-2018 AMJ96_CH01278 78c7e99d39674d5fffdb1dd39814538b 233 Pfam PF00805 Pentapeptide repeats (8 copies) 51 90 4.2E-9 T 12-10-2018 IPR001646 Pentapeptide repeat AMJ96_CH01278 78c7e99d39674d5fffdb1dd39814538b 233 Pfam PF00805 Pentapeptide repeats (8 copies) 131 169 7.1E-11 T 12-10-2018 IPR001646 Pentapeptide repeat AMJ96_CH01278 78c7e99d39674d5fffdb1dd39814538b 233 SUPERFAMILY SSF141571 33 176 7.06E-32 T 12-10-2018 AMJ96_CH01278 78c7e99d39674d5fffdb1dd39814538b 233 Gene3D G3DSA:2.160.20.80 20 104 1.6E-12 T 12-10-2018 AMJ96_PD00315 194d1033dc14bc405f49bbac526a73d7 213 SMART SM00448 6 116 1.1E-29 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00315 194d1033dc14bc405f49bbac526a73d7 213 SUPERFAMILY SSF52172 8 154 9.39E-33 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PD00315 194d1033dc14bc405f49bbac526a73d7 213 Gene3D G3DSA:3.40.50.2300 2 132 1.1E-41 T 12-10-2018 AMJ96_PD00315 194d1033dc14bc405f49bbac526a73d7 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 173 185 3.4E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00315 194d1033dc14bc405f49bbac526a73d7 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 143 157 3.4E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00315 194d1033dc14bc405f49bbac526a73d7 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 157 173 3.4E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00315 194d1033dc14bc405f49bbac526a73d7 213 SUPERFAMILY SSF46894 133 200 2.55E-17 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_PD00315 194d1033dc14bc405f49bbac526a73d7 213 Pfam PF00196 Bacterial regulatory proteins, luxR family 143 197 4.1E-18 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PD00315 194d1033dc14bc405f49bbac526a73d7 213 Gene3D G3DSA:1.10.10.10 135 199 9.5E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00315 194d1033dc14bc405f49bbac526a73d7 213 Pfam PF00072 Response regulator receiver domain 8 117 1.2E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00315 194d1033dc14bc405f49bbac526a73d7 213 SMART SM00421 140 197 8.3E-20 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH04269 fd2ed6b2a60693392ca082273984e826 241 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 237 4.9E-60 T 12-10-2018 AMJ96_CH04269 fd2ed6b2a60693392ca082273984e826 241 SUPERFAMILY SSF51735 3 239 5.72E-77 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH04269 fd2ed6b2a60693392ca082273984e826 241 Gene3D G3DSA:3.40.50.720 1 239 3.0E-75 T 12-10-2018 AMJ96_CH04269 fd2ed6b2a60693392ca082273984e826 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 2.3E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04269 fd2ed6b2a60693392ca082273984e826 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 2.3E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04269 fd2ed6b2a60693392ca082273984e826 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 2.3E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04269 fd2ed6b2a60693392ca082273984e826 241 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH04269 fd2ed6b2a60693392ca082273984e826 241 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 178 5.2E-5 T 12-10-2018 AMJ96_CH04269 fd2ed6b2a60693392ca082273984e826 241 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 3 240 4.2E-114 T 12-10-2018 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|MetaCyc: PWY-7948 AMJ96_CH04269 fd2ed6b2a60693392ca082273984e826 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 3.1E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04269 fd2ed6b2a60693392ca082273984e826 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 3.1E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04269 fd2ed6b2a60693392ca082273984e826 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 3.1E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04269 fd2ed6b2a60693392ca082273984e826 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 3.1E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04269 fd2ed6b2a60693392ca082273984e826 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.1E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04269 fd2ed6b2a60693392ca082273984e826 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 3.1E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03931 9357bb2b85dbbde4addb89dd197e03ef 284 Gene3D G3DSA:3.40.50.10490 99 276 1.2E-10 T 12-10-2018 AMJ96_CH03931 9357bb2b85dbbde4addb89dd197e03ef 284 Gene3D G3DSA:1.10.10.10 1 77 1.4E-12 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03931 9357bb2b85dbbde4addb89dd197e03ef 284 SUPERFAMILY SSF46689 3 77 6.45E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03931 9357bb2b85dbbde4addb89dd197e03ef 284 SUPERFAMILY SSF53697 104 259 1.38E-6 T 12-10-2018 AMJ96_CH00586 7fd7f41bd206f6db3d559523751e47d8 388 Pfam PF00155 Aminotransferase class I and II 40 381 1.6E-54 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_CH00586 7fd7f41bd206f6db3d559523751e47d8 388 Gene3D G3DSA:3.40.640.10 62 284 4.2E-100 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH00586 7fd7f41bd206f6db3d559523751e47d8 388 Gene3D G3DSA:3.90.1150.10 31 381 4.2E-100 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH00586 7fd7f41bd206f6db3d559523751e47d8 388 SUPERFAMILY SSF53383 7 384 9.95E-99 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH00586 7fd7f41bd206f6db3d559523751e47d8 388 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 234 247 - T 12-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AMJ96_CH02803 3a19a1e623b6ae793326896171210947 314 SUPERFAMILY SSF53822 22 312 2.2E-77 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH02803 3a19a1e623b6ae793326896171210947 314 Pfam PF13407 Periplasmic binding protein domain 23 289 2.5E-55 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_CH02803 3a19a1e623b6ae793326896171210947 314 Gene3D G3DSA:3.40.50.2300 23 300 3.2E-78 T 12-10-2018 AMJ96_CH02803 3a19a1e623b6ae793326896171210947 314 Gene3D G3DSA:3.40.50.2300 128 307 3.2E-78 T 12-10-2018 AMJ96_CH03709 aaea3e296cbc86d5c57af65ad15b6d1b 195 Gene3D G3DSA:3.40.50.10420 6 192 4.0E-43 T 12-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily AMJ96_CH03709 aaea3e296cbc86d5c57af65ad15b6d1b 195 PIRSF PIRSF006806 2 186 2.7E-33 T 12-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMJ96_CH03709 aaea3e296cbc86d5c57af65ad15b6d1b 195 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 7 184 1.8E-43 T 12-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMJ96_CH03709 aaea3e296cbc86d5c57af65ad15b6d1b 195 SUPERFAMILY SSF100950 6 190 5.86E-45 T 12-10-2018 IPR037171 NagB/RpiA transferase-like AMJ96_CH03709 aaea3e296cbc86d5c57af65ad15b6d1b 195 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 7 184 2.0E-33 T 12-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AMJ96_CH00077 b0733a87aaaebd3cd1d78fdfeb0b6934 618 Pfam PF10022 Uncharacterized protein conserved in bacteria (DUF2264) 18 355 3.1E-129 T 12-10-2018 IPR016624 Uncharacterised conserved protein UCP014753 AMJ96_CH00077 b0733a87aaaebd3cd1d78fdfeb0b6934 618 PIRSF PIRSF014753 2 603 1.8E-195 T 12-10-2018 IPR016624 Uncharacterised conserved protein UCP014753 AMJ96_PB00247 4902f5dd1ad7003d29aa7cb08ea57044 330 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 3 321 4.4E-60 T 12-10-2018 IPR017740 Type VI secretion system-associated, ImpA AMJ96_PB00247 4902f5dd1ad7003d29aa7cb08ea57044 330 Pfam PF06812 ImpA, N-terminal, type VI secretion system 8 131 9.4E-29 T 12-10-2018 IPR010657 ImpA, N-terminal AMJ96_CH03211 7c2787fa34332ce309c803b3dae97efc 334 Gene3D G3DSA:3.40.50.300 35 204 4.6E-41 T 12-10-2018 AMJ96_CH03211 7c2787fa34332ce309c803b3dae97efc 334 PIRSF PIRSF002849 1 333 2.4E-113 T 12-10-2018 AMJ96_CH03211 7c2787fa34332ce309c803b3dae97efc 334 SUPERFAMILY SSF52540 24 307 6.86E-40 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03211 7c2787fa34332ce309c803b3dae97efc 334 Gene3D G3DSA:1.10.8.300 217 332 2.4E-26 T 12-10-2018 AMJ96_CH03211 7c2787fa34332ce309c803b3dae97efc 334 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 54 187 2.5E-59 T 12-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 AMJ96_CH02468 9eeddf0c55d853bbd6117fc7f3e205b3 209 SUPERFAMILY SSF53448 11 197 3.43E-26 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH02468 9eeddf0c55d853bbd6117fc7f3e205b3 209 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 9 200 25.195 T 12-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 AMJ96_CH02468 9eeddf0c55d853bbd6117fc7f3e205b3 209 Gene3D G3DSA:3.90.550.10 8 205 6.5E-43 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH02468 9eeddf0c55d853bbd6117fc7f3e205b3 209 Pfam PF12804 MobA-like NTP transferase domain 13 164 1.8E-28 T 12-10-2018 IPR025877 MobA-like NTP transferase AMJ96_CH02468 9eeddf0c55d853bbd6117fc7f3e205b3 209 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 11 197 1.1E-51 T 12-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 AMJ96_CH01170 afd98f13953626fac5e39de1b8b54fd1 498 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 31 435 1.1E-187 T 12-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMJ96_CH01170 afd98f13953626fac5e39de1b8b54fd1 498 Gene3D G3DSA:3.40.50.300 10 243 9.2E-65 T 12-10-2018 AMJ96_CH01170 afd98f13953626fac5e39de1b8b54fd1 498 SUPERFAMILY SSF50447 247 331 6.65E-18 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMJ96_CH01170 afd98f13953626fac5e39de1b8b54fd1 498 SUPERFAMILY SSF50465 338 436 5.76E-23 T 12-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AMJ96_CH01170 afd98f13953626fac5e39de1b8b54fd1 498 Gene3D G3DSA:2.40.30.10 245 331 8.3E-21 T 12-10-2018 AMJ96_CH01170 afd98f13953626fac5e39de1b8b54fd1 498 PRINTS PR00315 GTP-binding elongation factor signature 129 140 2.4E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01170 afd98f13953626fac5e39de1b8b54fd1 498 PRINTS PR00315 GTP-binding elongation factor signature 166 175 2.4E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01170 afd98f13953626fac5e39de1b8b54fd1 498 PRINTS PR00315 GTP-binding elongation factor signature 32 45 2.4E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01170 afd98f13953626fac5e39de1b8b54fd1 498 PRINTS PR00315 GTP-binding elongation factor signature 113 123 2.4E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01170 afd98f13953626fac5e39de1b8b54fd1 498 PRINTS PR00315 GTP-binding elongation factor signature 93 101 2.4E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01170 afd98f13953626fac5e39de1b8b54fd1 498 Gene3D G3DSA:2.40.30.10 333 436 7.2E-25 T 12-10-2018 AMJ96_CH01170 afd98f13953626fac5e39de1b8b54fd1 498 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 22 473 46.904 T 12-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AMJ96_CH01170 afd98f13953626fac5e39de1b8b54fd1 498 Pfam PF00009 Elongation factor Tu GTP binding domain 32 230 1.1E-41 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH01170 afd98f13953626fac5e39de1b8b54fd1 498 SUPERFAMILY SSF52540 27 233 6.44E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01170 afd98f13953626fac5e39de1b8b54fd1 498 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 86 101 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site AMJ96_CH03742 0d61167a84f777eb31bd030856d785dd 400 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 17 27 - T 12-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03742 0d61167a84f777eb31bd030856d785dd 400 PRINTS PR00477 Phosphoglycerate kinase family signature 111 126 1.7E-77 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03742 0d61167a84f777eb31bd030856d785dd 400 PRINTS PR00477 Phosphoglycerate kinase family signature 169 191 1.7E-77 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03742 0d61167a84f777eb31bd030856d785dd 400 PRINTS PR00477 Phosphoglycerate kinase family signature 351 362 1.7E-77 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03742 0d61167a84f777eb31bd030856d785dd 400 PRINTS PR00477 Phosphoglycerate kinase family signature 12 28 1.7E-77 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03742 0d61167a84f777eb31bd030856d785dd 400 PRINTS PR00477 Phosphoglycerate kinase family signature 33 55 1.7E-77 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03742 0d61167a84f777eb31bd030856d785dd 400 PRINTS PR00477 Phosphoglycerate kinase family signature 374 391 1.7E-77 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03742 0d61167a84f777eb31bd030856d785dd 400 PRINTS PR00477 Phosphoglycerate kinase family signature 192 211 1.7E-77 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03742 0d61167a84f777eb31bd030856d785dd 400 PRINTS PR00477 Phosphoglycerate kinase family signature 139 161 1.7E-77 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03742 0d61167a84f777eb31bd030856d785dd 400 PRINTS PR00477 Phosphoglycerate kinase family signature 314 339 1.7E-77 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03742 0d61167a84f777eb31bd030856d785dd 400 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 6 398 38.731 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03742 0d61167a84f777eb31bd030856d785dd 400 SUPERFAMILY SSF53748 4 397 5.65E-146 T 12-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03742 0d61167a84f777eb31bd030856d785dd 400 Gene3D G3DSA:3.40.50.1260 171 388 5.5E-144 T 12-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03742 0d61167a84f777eb31bd030856d785dd 400 PIRSF PIRSF000724 1 400 5.3E-143 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03742 0d61167a84f777eb31bd030856d785dd 400 Gene3D G3DSA:3.40.50.1260 12 396 5.5E-144 T 12-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03742 0d61167a84f777eb31bd030856d785dd 400 Pfam PF00162 Phosphoglycerate kinase 8 388 7.0E-143 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_PD00302 6b84fbc311674f6bcacc74b290516d37 397 TIGRFAM TIGR03453 partition_RepA: plasmid partitioning protein RepA 17 396 3.1E-191 T 12-10-2018 IPR017818 Plasmid partitioning protein, RepA AMJ96_PD00302 6b84fbc311674f6bcacc74b290516d37 397 Gene3D G3DSA:3.40.50.300 116 394 2.3E-63 T 12-10-2018 AMJ96_PD00302 6b84fbc311674f6bcacc74b290516d37 397 SUPERFAMILY SSF52540 113 362 3.04E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00302 6b84fbc311674f6bcacc74b290516d37 397 Pfam PF13614 AAA domain 116 293 6.3E-38 T 12-10-2018 IPR025669 AAA domain AMJ96_CH01901 c04dbeda79b9d853356af8cb9fee956c 591 SUPERFAMILY SSF102114 172 412 2.75E-29 T 12-10-2018 AMJ96_CH01901 c04dbeda79b9d853356af8cb9fee956c 591 Pfam PF04055 Radical SAM superfamily 211 370 2.0E-16 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMJ96_CH01901 c04dbeda79b9d853356af8cb9fee956c 591 Gene3D G3DSA:3.80.30.20 208 411 8.7E-17 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe AMJ96_CH01901 c04dbeda79b9d853356af8cb9fee956c 591 SMART SM00729 204 419 1.1E-16 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMJ96_CH01332 acc22542705f8eb5f2faec52cf023d81 153 Pfam PF03918 Cytochrome C biogenesis protein 11 151 2.5E-52 T 12-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family AMJ96_CH01332 acc22542705f8eb5f2faec52cf023d81 153 Gene3D G3DSA:1.10.8.640 19 102 9.0E-30 T 12-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily AMJ96_CH00513 9ab26bd279b65d4ee9911458f8f5be35 339 Gene3D G3DSA:3.20.20.100 1 321 1.5E-62 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH00513 9ab26bd279b65d4ee9911458f8f5be35 339 Pfam PF00248 Aldo/keto reductase family 15 320 6.3E-43 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_CH00513 9ab26bd279b65d4ee9911458f8f5be35 339 SUPERFAMILY SSF51430 1 323 2.62E-62 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH00384 50920c0a369bda8ee82902b8ccc722b7 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 51 66 1.1E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH00384 50920c0a369bda8ee82902b8ccc722b7 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 213 227 1.1E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH00384 50920c0a369bda8ee82902b8ccc722b7 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 1.1E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH00384 50920c0a369bda8ee82902b8ccc722b7 292 PRINTS PR00412 Epoxide hydrolase signature 211 227 1.0E-5 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_CH00384 50920c0a369bda8ee82902b8ccc722b7 292 PRINTS PR00412 Epoxide hydrolase signature 245 267 1.0E-5 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_CH00384 50920c0a369bda8ee82902b8ccc722b7 292 PRINTS PR00412 Epoxide hydrolase signature 51 66 1.0E-5 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_CH00384 50920c0a369bda8ee82902b8ccc722b7 292 SUPERFAMILY SSF53474 9 269 3.22E-39 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH00384 50920c0a369bda8ee82902b8ccc722b7 292 Gene3D G3DSA:3.40.50.1820 2 279 2.1E-58 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH00384 50920c0a369bda8ee82902b8ccc722b7 292 Pfam PF12697 Alpha/beta hydrolase family 27 260 3.5E-18 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH01483 b7f5508913e2c4dfaa19b982442a3380 387 SUPERFAMILY SSF50621 244 385 5.93E-39 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMJ96_CH01483 b7f5508913e2c4dfaa19b982442a3380 387 Pfam PF01168 Alanine racemase, N-terminal domain 23 234 6.0E-51 T 12-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_CH01483 b7f5508913e2c4dfaa19b982442a3380 387 SUPERFAMILY SSF51419 23 240 2.8E-54 T 12-10-2018 IPR029066 PLP-binding barrel AMJ96_CH01483 b7f5508913e2c4dfaa19b982442a3380 387 Pfam PF00842 Alanine racemase, C-terminal domain 247 383 1.5E-36 T 12-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_CH01483 b7f5508913e2c4dfaa19b982442a3380 387 Gene3D G3DSA:2.40.37.10 23 381 1.0E-102 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMJ96_CH01483 b7f5508913e2c4dfaa19b982442a3380 387 TIGRFAM TIGR00492 alr: alanine racemase 22 384 2.6E-68 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_CH01483 b7f5508913e2c4dfaa19b982442a3380 387 PRINTS PR00992 Alanine racemase signature 41 57 9.0E-32 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_CH01483 b7f5508913e2c4dfaa19b982442a3380 387 PRINTS PR00992 Alanine racemase signature 209 236 9.0E-32 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_CH01483 b7f5508913e2c4dfaa19b982442a3380 387 PRINTS PR00992 Alanine racemase signature 137 149 9.0E-32 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_CH01483 b7f5508913e2c4dfaa19b982442a3380 387 PRINTS PR00992 Alanine racemase signature 171 182 9.0E-32 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_CH01483 b7f5508913e2c4dfaa19b982442a3380 387 PRINTS PR00992 Alanine racemase signature 77 95 9.0E-32 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_CH01483 b7f5508913e2c4dfaa19b982442a3380 387 PRINTS PR00992 Alanine racemase signature 280 295 9.0E-32 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_CH01483 b7f5508913e2c4dfaa19b982442a3380 387 PRINTS PR00992 Alanine racemase signature 263 278 9.0E-32 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_CH01483 b7f5508913e2c4dfaa19b982442a3380 387 Gene3D G3DSA:3.20.20.10 25 234 1.0E-102 T 12-10-2018 IPR029066 PLP-binding barrel AMJ96_CH01483 b7f5508913e2c4dfaa19b982442a3380 387 SMART SM01005 247 384 6.7E-56 T 12-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_CH01483 b7f5508913e2c4dfaa19b982442a3380 387 Hamap MF_01201 Alanine racemase. 16 384 28.574 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_CH00043 829b30b66048b443c2340d279c79a84a 248 Gene3D G3DSA:3.20.20.70 2 247 2.1E-83 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH00043 829b30b66048b443c2340d279c79a84a 248 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 4 235 2.0E-78 T 12-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 AMJ96_CH00043 829b30b66048b443c2340d279c79a84a 248 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 238 35.242 T 12-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 AMJ96_CH00043 829b30b66048b443c2340d279c79a84a 248 Pfam PF00977 Histidine biosynthesis protein 3 230 3.7E-77 T 12-10-2018 IPR006062 Histidine biosynthesis GO:0000105 AMJ96_CH00043 829b30b66048b443c2340d279c79a84a 248 SUPERFAMILY SSF51366 1 238 5.1E-72 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMJ96_PD00394 9ccd9d917d10167656e04f0ec8f10acf 428 Pfam PF13416 Bacterial extracellular solute-binding protein 49 341 1.2E-22 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PD00394 9ccd9d917d10167656e04f0ec8f10acf 428 Gene3D G3DSA:3.40.190.10 21 420 5.7E-50 T 12-10-2018 AMJ96_PD00394 9ccd9d917d10167656e04f0ec8f10acf 428 SUPERFAMILY SSF53850 27 420 3.22E-48 T 12-10-2018 AMJ96_CH00709 a69dd4738e044e085ddbddded3f8d5f6 158 SUPERFAMILY SSF54909 72 144 8.31E-13 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH00709 a69dd4738e044e085ddbddded3f8d5f6 158 Pfam PF13412 Winged helix-turn-helix DNA-binding 11 58 3.3E-17 T 12-10-2018 AMJ96_CH00709 a69dd4738e044e085ddbddded3f8d5f6 158 Gene3D G3DSA:3.30.70.920 63 146 6.1E-19 T 12-10-2018 AMJ96_CH00709 a69dd4738e044e085ddbddded3f8d5f6 158 SMART SM00418 12 95 0.0083 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH00709 a69dd4738e044e085ddbddded3f8d5f6 158 ProSitePatterns PS00519 AsnC-type HTH domain signature. 29 55 - T 12-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AMJ96_CH00709 a69dd4738e044e085ddbddded3f8d5f6 158 Pfam PF01037 Lrp/AsnC ligand binding domain 78 143 2.8E-11 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMJ96_CH00709 a69dd4738e044e085ddbddded3f8d5f6 158 Gene3D G3DSA:1.10.10.10 2 62 3.6E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00709 a69dd4738e044e085ddbddded3f8d5f6 158 SUPERFAMILY SSF46785 10 98 1.37E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00709 a69dd4738e044e085ddbddded3f8d5f6 158 SMART SM00344 11 117 1.5E-35 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMJ96_CH00709 a69dd4738e044e085ddbddded3f8d5f6 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 11 27 1.0E-16 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH00709 a69dd4738e044e085ddbddded3f8d5f6 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 38 57 1.0E-16 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH00709 a69dd4738e044e085ddbddded3f8d5f6 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 27 38 1.0E-16 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH00915 60106ba98cec1517976b5da75e66b0fb 270 Pfam PF06629 MltA-interacting protein MipA 39 265 2.2E-40 T 12-10-2018 IPR010583 MltA-interacting MipA AMJ96_CH03615 edcf40b1841995d7bbd41a07a2dc05ba 166 Gene3D G3DSA:1.20.120.1200 3 162 2.8E-43 T 12-10-2018 AMJ96_CH03615 edcf40b1841995d7bbd41a07a2dc05ba 166 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 17 160 2.2E-35 T 12-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03917 c626da31d2b83007e7d7136c402652bf 475 SUPERFAMILY SSF53720 3 473 6.68E-150 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_CH03917 c626da31d2b83007e7d7136c402652bf 475 Pfam PF00171 Aldehyde dehydrogenase family 17 470 3.7E-160 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_CH03917 c626da31d2b83007e7d7136c402652bf 475 Gene3D G3DSA:3.40.309.10 249 439 3.1E-171 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_CH03917 c626da31d2b83007e7d7136c402652bf 475 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMJ96_CH03917 c626da31d2b83007e7d7136c402652bf 475 Gene3D G3DSA:3.40.605.10 21 464 3.1E-171 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_CH02568 2f7921adc30ffd90ebb6a68efdb5ed79 297 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 2 295 3.6E-116 T 12-10-2018 IPR017685 HTH-type transcriptional regulator ArgP AMJ96_CH02568 2f7921adc30ffd90ebb6a68efdb5ed79 297 SUPERFAMILY SSF46785 1 111 8.78E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02568 2f7921adc30ffd90ebb6a68efdb5ed79 297 SUPERFAMILY SSF53850 94 289 1.61E-16 T 12-10-2018 AMJ96_CH02568 2f7921adc30ffd90ebb6a68efdb5ed79 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 5.8E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02568 2f7921adc30ffd90ebb6a68efdb5ed79 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.3E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02568 2f7921adc30ffd90ebb6a68efdb5ed79 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.3E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02568 2f7921adc30ffd90ebb6a68efdb5ed79 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.3E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02568 2f7921adc30ffd90ebb6a68efdb5ed79 297 Gene3D G3DSA:3.40.190.290 91 296 5.2E-75 T 12-10-2018 AMJ96_CH02568 2f7921adc30ffd90ebb6a68efdb5ed79 297 Gene3D G3DSA:1.10.10.10 1 82 1.5E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02568 2f7921adc30ffd90ebb6a68efdb5ed79 297 Pfam PF03466 LysR substrate binding domain 96 276 4.0E-11 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH00943 0d05234d5fe8f70fed8755b6a9ce9981 496 ProSitePatterns PS00455 Putative AMP-binding domain signature. 151 162 - T 12-10-2018 IPR020845 AMP-binding, conserved site AMJ96_CH00943 0d05234d5fe8f70fed8755b6a9ce9981 496 Gene3D G3DSA:3.30.300.310 391 495 9.0E-28 T 12-10-2018 AMJ96_CH00943 0d05234d5fe8f70fed8755b6a9ce9981 496 Gene3D G3DSA:3.40.50.12780 1 388 2.8E-139 T 12-10-2018 AMJ96_CH00943 0d05234d5fe8f70fed8755b6a9ce9981 496 Pfam PF13193 AMP-binding enzyme C-terminal domain 404 479 1.8E-14 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMJ96_CH00943 0d05234d5fe8f70fed8755b6a9ce9981 496 SUPERFAMILY SSF56801 3 492 1.7E-147 T 12-10-2018 AMJ96_CH00943 0d05234d5fe8f70fed8755b6a9ce9981 496 Pfam PF00501 AMP-binding enzyme 3 395 3.3E-103 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMJ96_PD00664 7d39c22f2012cdcf5b7b28f2f43ea17c 168 SMART SM00953 27 151 6.3E-16 T 12-10-2018 IPR014914 RES domain AMJ96_PD00664 7d39c22f2012cdcf5b7b28f2f43ea17c 168 Pfam PF08808 RES domain 16 148 8.3E-22 T 12-10-2018 IPR014914 RES domain AMJ96_PD00014 b6035910a523ab7266658546bd242ba9 322 SUPERFAMILY SSF50129 6 146 6.54E-29 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_PD00014 b6035910a523ab7266658546bd242ba9 322 SUPERFAMILY SSF51735 114 248 8.52E-27 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00014 b6035910a523ab7266658546bd242ba9 322 Pfam PF13602 Zinc-binding dehydrogenase 191 320 1.2E-11 T 12-10-2018 AMJ96_PD00014 b6035910a523ab7266658546bd242ba9 322 SMART SM00829 18 321 1.7E-10 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_PD00014 b6035910a523ab7266658546bd242ba9 322 Gene3D G3DSA:3.90.180.10 10 309 6.7E-82 T 12-10-2018 AMJ96_PD00014 b6035910a523ab7266658546bd242ba9 322 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 89 8.7E-9 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_PD00014 b6035910a523ab7266658546bd242ba9 322 Gene3D G3DSA:3.40.50.720 137 259 6.7E-82 T 12-10-2018 AMJ96_PD00540 27480e436943368ff865c9ebba7bba61 238 SUPERFAMILY SSF56214 112 232 5.23E-23 T 12-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMJ96_PD00540 27480e436943368ff865c9ebba7bba61 238 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 112 214 2.5E-15 T 12-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMJ96_PD00540 27480e436943368ff865c9ebba7bba61 238 Gene3D G3DSA:3.90.470.20 25 229 1.2E-32 T 12-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMJ96_PD00540 27480e436943368ff865c9ebba7bba61 238 SUPERFAMILY SSF56214 10 103 9.42E-17 T 12-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMJ96_PD00540 27480e436943368ff865c9ebba7bba61 238 Gene3D G3DSA:3.90.470.20 113 216 1.2E-32 T 12-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 AMJ96_CH01366 d05917f4ea52e32775db19d90bcee6f7 116 SUPERFAMILY SSF54909 1 115 4.56E-32 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH01366 d05917f4ea52e32775db19d90bcee6f7 116 Gene3D G3DSA:3.30.70.1060 1 116 1.9E-38 T 12-10-2018 AMJ96_CH01366 d05917f4ea52e32775db19d90bcee6f7 116 Pfam PF03795 YCII-related domain 1 115 1.0E-23 T 12-10-2018 IPR005545 YCII-related AMJ96_CH03308 7c2719a8b150e38aaa89a131e41b0f41 581 SMART SM00490 281 362 6.5E-34 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH03308 7c2719a8b150e38aaa89a131e41b0f41 581 Pfam PF00271 Helicase conserved C-terminal domain 254 362 1.6E-29 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH03308 7c2719a8b150e38aaa89a131e41b0f41 581 SUPERFAMILY SSF52540 97 383 3.48E-75 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03308 7c2719a8b150e38aaa89a131e41b0f41 581 SMART SM00487 42 244 8.5E-62 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMJ96_CH03308 7c2719a8b150e38aaa89a131e41b0f41 581 Pfam PF00270 DEAD/DEAH box helicase 47 217 3.8E-52 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AMJ96_CH03308 7c2719a8b150e38aaa89a131e41b0f41 581 Gene3D G3DSA:3.40.50.300 10 232 3.0E-79 T 12-10-2018 AMJ96_CH03308 7c2719a8b150e38aaa89a131e41b0f41 581 Gene3D G3DSA:3.40.50.300 236 400 1.8E-52 T 12-10-2018 AMJ96_CH00031 d36b90cbec54b241f9d66acb007fb037 466 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 7 458 2.7E-181 T 12-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMJ96_CH00031 d36b90cbec54b241f9d66acb007fb037 466 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 78 92 - T 12-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMJ96_CH00031 d36b90cbec54b241f9d66acb007fb037 466 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 227 386 2.2E-80 T 12-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMJ96_CH00031 d36b90cbec54b241f9d66acb007fb037 466 SMART SM00996 6 465 0.0 T 12-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMJ96_CH00031 d36b90cbec54b241f9d66acb007fb037 466 Gene3D G3DSA:3.40.50.1480 9 466 7.5E-236 T 12-10-2018 AMJ96_CH00031 d36b90cbec54b241f9d66acb007fb037 466 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 6 465 7.8E-145 T 12-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMJ96_CH00031 d36b90cbec54b241f9d66acb007fb037 466 SUPERFAMILY SSF51735 227 386 3.08E-75 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00031 d36b90cbec54b241f9d66acb007fb037 466 PIRSF PIRSF001109 1 466 1.3E-184 T 12-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMJ96_CH00031 d36b90cbec54b241f9d66acb007fb037 466 SUPERFAMILY SSF52283 5 466 8.5E-114 T 12-10-2018 AMJ96_CH00031 d36b90cbec54b241f9d66acb007fb037 466 Gene3D G3DSA:3.40.50.720 229 386 7.5E-236 T 12-10-2018 AMJ96_CH00031 d36b90cbec54b241f9d66acb007fb037 466 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 2 458 47.301 T 12-10-2018 IPR034373 Adenosylhomocysteinase GO:0004013|GO:0019510|GO:0051287 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-2408508|Reactome: R-HSA-5578997 AMJ96_CH00031 d36b90cbec54b241f9d66acb007fb037 466 SMART SM00997 227 386 2.5E-106 T 12-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMJ96_CH00031 d36b90cbec54b241f9d66acb007fb037 466 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 249 266 - T 12-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 AMJ96_CH03663 cb0a57d845bab4e742d4bf269584fe09 389 Gene3D G3DSA:3.30.70.360 181 297 7.7E-126 T 12-10-2018 AMJ96_CH03663 cb0a57d845bab4e742d4bf269584fe09 389 SUPERFAMILY SSF53187 5 385 8.86E-81 T 12-10-2018 AMJ96_CH03663 cb0a57d845bab4e742d4bf269584fe09 389 PIRSF PIRSF005962 2 389 2.2E-114 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 AMJ96_CH03663 cb0a57d845bab4e742d4bf269584fe09 389 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 14 372 1.1E-97 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 AMJ96_CH03663 cb0a57d845bab4e742d4bf269584fe09 389 SUPERFAMILY SSF55031 183 298 4.04E-26 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMJ96_CH03663 cb0a57d845bab4e742d4bf269584fe09 389 Pfam PF01546 Peptidase family M20/M25/M40 73 384 1.0E-34 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 AMJ96_CH03663 cb0a57d845bab4e742d4bf269584fe09 389 Gene3D G3DSA:3.40.630.10 15 372 7.7E-126 T 12-10-2018 AMJ96_CH03663 cb0a57d845bab4e742d4bf269584fe09 389 Pfam PF07687 Peptidase dimerisation domain 185 274 6.9E-6 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain AMJ96_CH01393 5a9d29fc459a380007a7903f5ecd7f7d 363 Pfam PF16363 GDP-mannose 4,6 dehydratase 9 339 5.7E-161 T 12-10-2018 IPR016040 NAD(P)-binding domain AMJ96_CH01393 5a9d29fc459a380007a7903f5ecd7f7d 363 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 6 349 57.074 T 12-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 AMJ96_CH01393 5a9d29fc459a380007a7903f5ecd7f7d 363 SUPERFAMILY SSF51735 6 345 1.03E-81 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01393 5a9d29fc459a380007a7903f5ecd7f7d 363 Gene3D G3DSA:3.90.25.10 196 344 8.3E-169 T 12-10-2018 AMJ96_CH01393 5a9d29fc459a380007a7903f5ecd7f7d 363 Gene3D G3DSA:3.40.50.720 8 330 8.3E-169 T 12-10-2018 AMJ96_CH01393 5a9d29fc459a380007a7903f5ecd7f7d 363 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 6 346 1.1E-189 T 12-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 AMJ96_CH04109 b9aab8c232c527046ccee0ef15a01640 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 104 115 4.2E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04109 b9aab8c232c527046ccee0ef15a01640 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 179 198 4.2E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04109 b9aab8c232c527046ccee0ef15a01640 274 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 166 4.2E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04109 b9aab8c232c527046ccee0ef15a01640 274 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 34 270 9.8E-50 T 12-10-2018 AMJ96_CH04109 b9aab8c232c527046ccee0ef15a01640 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 200 217 1.1E-33 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04109 b9aab8c232c527046ccee0ef15a01640 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 104 115 1.1E-33 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04109 b9aab8c232c527046ccee0ef15a01640 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 168 1.1E-33 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04109 b9aab8c232c527046ccee0ef15a01640 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 29 46 1.1E-33 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04109 b9aab8c232c527046ccee0ef15a01640 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 198 1.1E-33 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04109 b9aab8c232c527046ccee0ef15a01640 274 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 234 254 1.1E-33 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04109 b9aab8c232c527046ccee0ef15a01640 274 Gene3D G3DSA:3.40.50.720 15 273 8.9E-70 T 12-10-2018 AMJ96_CH04109 b9aab8c232c527046ccee0ef15a01640 274 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 166 194 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH04109 b9aab8c232c527046ccee0ef15a01640 274 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 28 210 2.1E-5 T 12-10-2018 AMJ96_CH04109 b9aab8c232c527046ccee0ef15a01640 274 SUPERFAMILY SSF51735 26 273 8.49E-66 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00655 17ea01d296657507335e9c2962276786 659 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 58 358 4.5E-106 T 12-10-2018 IPR014146 DNA ligase D, ligase domain AMJ96_CH00655 17ea01d296657507335e9c2962276786 659 Pfam PF01068 ATP dependent DNA ligase domain 70 239 3.3E-25 T 12-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 AMJ96_CH00655 17ea01d296657507335e9c2962276786 659 SUPERFAMILY SSF56091 43 240 5.04E-43 T 12-10-2018 AMJ96_CH00655 17ea01d296657507335e9c2962276786 659 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 374 619 2.2E-91 T 12-10-2018 IPR014145 DNA ligase D, polymerase domain AMJ96_CH00655 17ea01d296657507335e9c2962276786 659 Gene3D G3DSA:3.30.1490.70 66 237 2.5E-43 T 12-10-2018 AMJ96_CH00655 17ea01d296657507335e9c2962276786 659 Gene3D G3DSA:2.40.50.140 241 360 8.8E-32 T 12-10-2018 AMJ96_CH00655 17ea01d296657507335e9c2962276786 659 Gene3D G3DSA:3.90.920.30 381 659 4.5E-95 T 12-10-2018 AMJ96_CH00655 17ea01d296657507335e9c2962276786 659 SUPERFAMILY SSF50249 243 362 4.74E-23 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH00655 17ea01d296657507335e9c2962276786 659 TIGRFAM TIGR02776 NHEJ_ligase_prk: DNA ligase D 67 648 1.6E-199 T 12-10-2018 IPR014143 DNA ligase D AMJ96_CH00655 17ea01d296657507335e9c2962276786 659 Gene3D G3DSA:3.30.470.30 81 196 2.5E-43 T 12-10-2018 AMJ96_CH00655 17ea01d296657507335e9c2962276786 659 Pfam PF04679 ATP dependent DNA ligase C terminal region 259 352 1.7E-22 T 12-10-2018 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 AMJ96_CH03357 3f48a53f58db7618dd85afcce80d5508 465 Pfam PF14464 Prokaryotic homologs of the JAB domain 15 111 2.9E-6 T 12-10-2018 IPR028090 JAB domain, prokaryotic AMJ96_CH03357 3f48a53f58db7618dd85afcce80d5508 465 SUPERFAMILY SSF69572 183 313 1.7E-25 T 12-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 AMJ96_CH03357 3f48a53f58db7618dd85afcce80d5508 465 Gene3D G3DSA:3.40.50.720 185 432 5.3E-29 T 12-10-2018 AMJ96_CH03357 3f48a53f58db7618dd85afcce80d5508 465 Pfam PF00899 ThiF family 180 312 1.8E-21 T 12-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMJ96_CH00380 97f6e671b2ca978e48dc4e42a85eb0e1 314 Gene3D G3DSA:3.90.245.10 1 313 1.5E-117 T 12-10-2018 IPR036452 Ribonucleoside hydrolase-like AMJ96_CH00380 97f6e671b2ca978e48dc4e42a85eb0e1 314 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 5 305 1.3E-96 T 12-10-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AMJ96_CH00380 97f6e671b2ca978e48dc4e42a85eb0e1 314 SUPERFAMILY SSF53590 5 312 6.15E-105 T 12-10-2018 IPR036452 Ribonucleoside hydrolase-like AMJ96_CH02546 1bb5842348ac28de833fab02a19c5c0f 239 SMART SM00100 27 145 2.4E-13 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_CH02546 1bb5842348ac28de833fab02a19c5c0f 239 Gene3D G3DSA:2.60.120.10 41 158 1.1E-30 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH02546 1bb5842348ac28de833fab02a19c5c0f 239 ProSitePatterns PS00042 Crp-type HTH domain signature. 189 212 - T 12-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 AMJ96_CH02546 1bb5842348ac28de833fab02a19c5c0f 239 SMART SM00419 181 230 1.1E-17 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_CH02546 1bb5842348ac28de833fab02a19c5c0f 239 Pfam PF13545 Crp-like helix-turn-helix domain 162 237 1.5E-18 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_CH02546 1bb5842348ac28de833fab02a19c5c0f 239 SUPERFAMILY SSF51206 22 157 2.09E-27 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like AMJ96_CH02546 1bb5842348ac28de833fab02a19c5c0f 239 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 187 203 2.2E-12 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_CH02546 1bb5842348ac28de833fab02a19c5c0f 239 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 203 218 2.2E-12 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_CH02546 1bb5842348ac28de833fab02a19c5c0f 239 Pfam PF00027 Cyclic nucleotide-binding domain 45 128 1.0E-7 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_CH02546 1bb5842348ac28de833fab02a19c5c0f 239 Gene3D G3DSA:1.10.10.10 159 239 7.0E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02546 1bb5842348ac28de833fab02a19c5c0f 239 SUPERFAMILY SSF46785 159 237 4.37E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01293 8d0207f2f82e531de515a8f377c31fd9 143 Pfam PF05443 ROS/MUCR transcriptional regulator protein 13 135 5.3E-50 T 12-10-2018 IPR008807 ROSMUCR transcriptional regulator GO:0003677|GO:0006355|GO:0008270 AMJ96_CH01293 8d0207f2f82e531de515a8f377c31fd9 143 Gene3D G3DSA:1.10.10.1550 62 118 3.1E-31 T 12-10-2018 AMJ96_CH01749 1a57844dee3c0169360a9d239d55d585 126 Pfam PF06803 Protein of unknown function (DUF1232) 34 70 1.9E-14 T 12-10-2018 IPR010652 Domain of unknown function DUF1232 MetaCyc: PWY-7511 AMJ96_CH04014 baa129c4df48e6f1b3cd6cda410b2951 425 SUPERFAMILY SSF55729 225 350 7.07E-13 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH04014 baa129c4df48e6f1b3cd6cda410b2951 425 Pfam PF13480 Acetyltransferase (GNAT) domain 221 349 1.6E-22 T 12-10-2018 IPR038740 BioF2-like, acetyltransferase domain KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 AMJ96_PD00072 0dece462363efc43447299bf8bfa744a 252 SMART SM00895 94 220 3.1E-19 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00072 0dece462363efc43447299bf8bfa744a 252 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 73 7.6E-23 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00072 0dece462363efc43447299bf8bfa744a 252 Gene3D G3DSA:1.10.10.10 4 79 2.3E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00072 0dece462363efc43447299bf8bfa744a 252 SUPERFAMILY SSF48008 90 226 2.88E-27 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00072 0dece462363efc43447299bf8bfa744a 252 Gene3D G3DSA:1.20.120.530 89 229 4.3E-29 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00072 0dece462363efc43447299bf8bfa744a 252 SMART SM00345 14 73 5.1E-22 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00072 0dece462363efc43447299bf8bfa744a 252 SUPERFAMILY SSF46785 1 77 1.05E-25 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00072 0dece462363efc43447299bf8bfa744a 252 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 2.1E-11 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00072 0dece462363efc43447299bf8bfa744a 252 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 2.1E-11 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00072 0dece462363efc43447299bf8bfa744a 252 Pfam PF07729 FCD domain 94 219 2.9E-23 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH03261 0b7d5457060d944a9dadad6e6e082083 346 SMART SM01230 91 333 1.5E-48 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH03261 0b7d5457060d944a9dadad6e6e082083 346 Gene3D G3DSA:3.30.590.40 92 338 2.7E-93 T 12-10-2018 AMJ96_CH03261 0b7d5457060d944a9dadad6e6e082083 346 SUPERFAMILY SSF54368 32 86 1.18E-8 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH03261 0b7d5457060d944a9dadad6e6e082083 346 Gene3D G3DSA:3.10.20.70 1 91 9.6E-30 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH03261 0b7d5457060d944a9dadad6e6e082083 346 SUPERFAMILY SSF55931 100 332 5.0E-57 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMJ96_CH03261 0b7d5457060d944a9dadad6e6e082083 346 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 5 84 6.5E-15 T 12-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMJ96_CH03261 0b7d5457060d944a9dadad6e6e082083 346 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 217 234 - T 12-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMJ96_CH03261 0b7d5457060d944a9dadad6e6e082083 346 ProSitePatterns PS00180 Glutamine synthetase signature 1. 43 60 - T 12-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMJ96_CH03261 0b7d5457060d944a9dadad6e6e082083 346 Pfam PF00120 Glutamine synthetase, catalytic domain 104 331 7.9E-17 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH00433 7b6e5a1a1c673252fb485680fe628a7f 139 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 132 9.442 T 12-10-2018 IPR022907 VapC family GO:0004540 AMJ96_CH00433 7b6e5a1a1c673252fb485680fe628a7f 139 SUPERFAMILY SSF88723 1 136 4.49E-26 T 12-10-2018 IPR029060 PIN-like domain superfamily AMJ96_CH00433 7b6e5a1a1c673252fb485680fe628a7f 139 Gene3D G3DSA:3.40.50.1010 1 138 4.4E-37 T 12-10-2018 AMJ96_CH00433 7b6e5a1a1c673252fb485680fe628a7f 139 Pfam PF01850 PIN domain 2 125 1.1E-12 T 12-10-2018 IPR002716 PIN domain AMJ96_PD00195 7151a58d8e459f1af55dd2a95f5e689c 1008 Gene3D G3DSA:3.30.465.40 28 202 1.8E-41 T 12-10-2018 AMJ96_PD00195 7151a58d8e459f1af55dd2a95f5e689c 1008 SUPERFAMILY SSF55103 259 535 1.32E-44 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMJ96_PD00195 7151a58d8e459f1af55dd2a95f5e689c 1008 SUPERFAMILY SSF56176 18 281 1.55E-48 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMJ96_PD00195 7151a58d8e459f1af55dd2a95f5e689c 1008 Pfam PF02913 FAD linked oxidases, C-terminal domain 280 534 1.7E-51 T 12-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AMJ96_PD00195 7151a58d8e459f1af55dd2a95f5e689c 1008 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 665 676 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMJ96_PD00195 7151a58d8e459f1af55dd2a95f5e689c 1008 SUPERFAMILY SSF46548 519 681 6.28E-8 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMJ96_PD00195 7151a58d8e459f1af55dd2a95f5e689c 1008 Pfam PF13183 4Fe-4S dicluster domain 570 679 4.0E-12 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMJ96_PD00195 7151a58d8e459f1af55dd2a95f5e689c 1008 Pfam PF01565 FAD binding domain 52 186 5.2E-35 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMJ96_PC00259 9016771682fbfe6674460f71c31453f9 299 TIGRFAM TIGR02772 Ku_bact: Ku protein 5 256 1.6E-84 T 12-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMJ96_PC00259 9016771682fbfe6674460f71c31453f9 299 SMART SM00559 56 185 7.2E-16 T 12-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 AMJ96_PC00259 9016771682fbfe6674460f71c31453f9 299 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 4 256 32.595 T 12-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMJ96_PC00259 9016771682fbfe6674460f71c31453f9 299 Pfam PF02735 Ku70/Ku80 beta-barrel domain 14 177 2.0E-31 T 12-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 AMJ96_PC00259 9016771682fbfe6674460f71c31453f9 299 SUPERFAMILY SSF100939 4 258 7.65E-48 T 12-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily AMJ96_PC00259 9016771682fbfe6674460f71c31453f9 299 Gene3D G3DSA:2.40.290.10 5 176 9.7E-14 T 12-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily AMJ96_PC00259 9016771682fbfe6674460f71c31453f9 299 PIRSF PIRSF006493 2 291 1.1E-114 T 12-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMJ96_PC00052 980b789ad68e2530b503d82d9d1db0d0 149 Pfam PF05656 Protein of unknown function (DUF805) 15 138 2.3E-30 T 12-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 AMJ96_CH02828 eb08f6bb36d971fd8b6ac33ccd073070 287 SUPERFAMILY SSF103481 44 131 2.29E-7 T 12-10-2018 AMJ96_CH02828 eb08f6bb36d971fd8b6ac33ccd073070 287 Pfam PF00892 EamA-like transporter family 8 130 1.2E-12 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH02828 eb08f6bb36d971fd8b6ac33ccd073070 287 Pfam PF00892 EamA-like transporter family 149 280 3.8E-12 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH02828 eb08f6bb36d971fd8b6ac33ccd073070 287 SUPERFAMILY SSF103481 182 281 8.5E-6 T 12-10-2018 AMJ96_CH01496 3425e40103070918f6cc6d1c30c11ab2 420 Gene3D G3DSA:3.40.47.10 268 420 2.8E-52 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH01496 3425e40103070918f6cc6d1c30c11ab2 420 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 2 416 2.0E-186 T 12-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 AMJ96_CH01496 3425e40103070918f6cc6d1c30c11ab2 420 Gene3D G3DSA:3.40.47.10 1 262 5.2E-89 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH01496 3425e40103070918f6cc6d1c30c11ab2 420 PIRSF PIRSF000447 1 420 8.0E-196 T 12-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 AMJ96_CH01496 3425e40103070918f6cc6d1c30c11ab2 420 SUPERFAMILY SSF53901 221 418 1.75E-70 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH01496 3425e40103070918f6cc6d1c30c11ab2 420 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 254 1.5E-59 T 12-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AMJ96_CH01496 3425e40103070918f6cc6d1c30c11ab2 420 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 262 375 9.7E-35 T 12-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AMJ96_CH01496 3425e40103070918f6cc6d1c30c11ab2 420 SMART SM00825 Beta-ketoacyl synthase 4 420 3.4E-14 T 12-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMJ96_CH01496 3425e40103070918f6cc6d1c30c11ab2 420 SUPERFAMILY SSF53901 1 261 3.67E-76 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH01496 3425e40103070918f6cc6d1c30c11ab2 420 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 161 177 - T 12-10-2018 IPR018201 Beta-ketoacyl synthase, active site AMJ96_CH00647 d2c6e9f58005fbb1dc16983c37b9150b 528 Gene3D G3DSA:3.10.105.10 276 492 3.1E-121 T 12-10-2018 AMJ96_CH00647 d2c6e9f58005fbb1dc16983c37b9150b 528 SUPERFAMILY SSF53850 40 515 1.63E-117 T 12-10-2018 AMJ96_CH00647 d2c6e9f58005fbb1dc16983c37b9150b 528 PIRSF PIRSF002741 1 521 1.3E-96 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_CH00647 d2c6e9f58005fbb1dc16983c37b9150b 528 Gene3D G3DSA:3.90.76.10 65 183 3.1E-121 T 12-10-2018 AMJ96_CH00647 d2c6e9f58005fbb1dc16983c37b9150b 528 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 77 416 1.0E-85 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_CH00647 d2c6e9f58005fbb1dc16983c37b9150b 528 Gene3D G3DSA:3.40.190.10 48 506 3.1E-121 T 12-10-2018 AMJ96_CH04301 3e2713104fc8a96dc7f3c9a5f6f965de 392 SUPERFAMILY SSF53756 21 384 7.46E-60 T 12-10-2018 AMJ96_CH04301 3e2713104fc8a96dc7f3c9a5f6f965de 392 Pfam PF00534 Glycosyl transferases group 1 197 348 1.9E-19 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 AMJ96_CH04301 3e2713104fc8a96dc7f3c9a5f6f965de 392 Gene3D G3DSA:3.40.50.2000 192 368 1.1E-55 T 12-10-2018 AMJ96_CH04301 3e2713104fc8a96dc7f3c9a5f6f965de 392 Gene3D G3DSA:3.40.50.2000 30 381 1.1E-55 T 12-10-2018 AMJ96_CH04301 3e2713104fc8a96dc7f3c9a5f6f965de 392 Pfam PF13439 Glycosyltransferase Family 4 33 193 2.9E-19 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMJ96_PB00125 6318e1948a5ad87e1ac759db994b71c4 537 Gene3D G3DSA:3.40.630.10 57 132 6.6E-6 T 12-10-2018 AMJ96_PB00125 6318e1948a5ad87e1ac759db994b71c4 537 SUPERFAMILY SSF53187 63 403 4.55E-15 T 12-10-2018 AMJ96_CH03692 710f680125df6157395c95865dd39f1e 531 SUPERFAMILY SSF143548 321 449 1.36E-34 T 12-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 AMJ96_CH03692 710f680125df6157395c95865dd39f1e 531 Gene3D G3DSA:3.30.1330.90 321 453 2.8E-30 T 12-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 AMJ96_CH03692 710f680125df6157395c95865dd39f1e 531 Gene3D G3DSA:3.40.50.720 100 281 1.5E-120 T 12-10-2018 AMJ96_CH03692 710f680125df6157395c95865dd39f1e 531 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 283 6.7E-64 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMJ96_CH03692 710f680125df6157395c95865dd39f1e 531 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMJ96_CH03692 710f680125df6157395c95865dd39f1e 531 Gene3D G3DSA:3.40.50.720 6 305 1.5E-120 T 12-10-2018 AMJ96_CH03692 710f680125df6157395c95865dd39f1e 531 SUPERFAMILY SSF51735 100 284 1.63E-61 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03692 710f680125df6157395c95865dd39f1e 531 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 315 2.6E-36 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AMJ96_CH03692 710f680125df6157395c95865dd39f1e 531 SUPERFAMILY SSF55021 453 526 7.5E-15 T 12-10-2018 AMJ96_CH03692 710f680125df6157395c95865dd39f1e 531 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMJ96_CH03692 710f680125df6157395c95865dd39f1e 531 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 146 173 - T 12-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AMJ96_CH03692 710f680125df6157395c95865dd39f1e 531 SUPERFAMILY SSF52283 3 129 1.13E-38 T 12-10-2018 AMJ96_CH03692 710f680125df6157395c95865dd39f1e 531 TIGRFAM TIGR01327 PGDH: phosphoglycerate dehydrogenase 4 527 6.9E-205 T 12-10-2018 IPR006236 D-3-phosphoglycerate dehydrogenase GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|Reactome: R-HSA-977347 AMJ96_CH03692 710f680125df6157395c95865dd39f1e 531 Gene3D G3DSA:3.30.70.260 454 528 5.7E-20 T 12-10-2018 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 4 1054 0.0 T 12-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 SUPERFAMILY SSF82693 41 134 1.26E-26 T 12-10-2018 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 Gene3D G3DSA:3.30.2090.10 731 819 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 Gene3D G3DSA:3.30.2090.10 181 278 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 Gene3D G3DSA:3.30.70.1430 577 678 0.0 T 12-10-2018 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 SUPERFAMILY SSF82714 732 818 9.55E-23 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 SUPERFAMILY SSF82714 185 274 2.49E-21 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 SUPERFAMILY SSF82693 682 867 9.68E-28 T 12-10-2018 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 SUPERFAMILY SSF82866 299 499 6.54E-54 T 12-10-2018 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 SUPERFAMILY SSF82693 575 681 6.02E-27 T 12-10-2018 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 Gene3D G3DSA:3.30.70.1320 135 335 0.0 T 12-10-2018 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 2.9E-95 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 2.9E-95 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 PRINTS PR00702 Acriflavin resistance protein family signature 631 645 2.9E-95 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.9E-95 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 2.9E-95 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 2.9E-95 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 2.9E-95 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 2.9E-95 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 PRINTS PR00702 Acriflavin resistance protein family signature 562 579 2.9E-95 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 Gene3D G3DSA:3.30.70.1440 679 876 0.0 T 12-10-2018 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 SUPERFAMILY SSF82866 841 1038 3.79E-46 T 12-10-2018 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 Gene3D G3DSA:1.20.1640.10 523 1033 0.0 T 12-10-2018 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 Gene3D G3DSA:1.20.1640.10 10 522 0.0 T 12-10-2018 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 SUPERFAMILY SSF82693 137 333 4.06E-31 T 12-10-2018 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 Pfam PF00873 AcrB/AcrD/AcrF family 3 1036 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03563 5f2d421276825681c59f4d981b318525 1066 Gene3D G3DSA:3.30.70.1430 40 827 0.0 T 12-10-2018 AMJ96_CH01343 699abe5ce59348048d450c71da0fae86 294 Gene3D G3DSA:3.40.470.10 105 292 2.7E-51 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_CH01343 699abe5ce59348048d450c71da0fae86 294 Pfam PF03167 Uracil DNA glycosylase superfamily 132 279 4.4E-38 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_CH01343 699abe5ce59348048d450c71da0fae86 294 SUPERFAMILY SSF52141 102 286 2.68E-48 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_CH01343 699abe5ce59348048d450c71da0fae86 294 SMART SM00986 130 280 8.6E-29 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_CH01343 699abe5ce59348048d450c71da0fae86 294 SMART SM00987 130 280 8.6E-29 T 12-10-2018 AMJ96_CH01343 699abe5ce59348048d450c71da0fae86 294 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 117 280 1.2E-46 T 12-10-2018 IPR005273 Uracil-DNA glycosylase family 4 AMJ96_PD00310 04a513b22c47ea469dfce21f7a278919 513 Gene3D G3DSA:3.40.50.300 276 507 9.0E-41 T 12-10-2018 AMJ96_PD00310 04a513b22c47ea469dfce21f7a278919 513 Pfam PF00005 ABC transporter 33 185 8.1E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00310 04a513b22c47ea469dfce21f7a278919 513 ProSitePatterns PS00211 ABC transporters family signature. 412 426 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00310 04a513b22c47ea469dfce21f7a278919 513 SUPERFAMILY SSF52540 16 243 4.07E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00310 04a513b22c47ea469dfce21f7a278919 513 Gene3D G3DSA:3.40.50.300 10 256 2.1E-57 T 12-10-2018 AMJ96_PD00310 04a513b22c47ea469dfce21f7a278919 513 SUPERFAMILY SSF52540 286 502 3.76E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00310 04a513b22c47ea469dfce21f7a278919 513 SMART SM00382 42 233 2.6E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00310 04a513b22c47ea469dfce21f7a278919 513 SMART SM00382 294 488 0.0075 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00310 04a513b22c47ea469dfce21f7a278919 513 Pfam PF00005 ABC transporter 287 439 8.9E-17 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02998 144005d53edba61263ac93f22915be9c 155 Pfam PF01584 CheW-like domain 15 149 1.8E-35 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMJ96_CH02998 144005d53edba61263ac93f22915be9c 155 Gene3D G3DSA:2.40.50.180 33 142 1.9E-39 T 12-10-2018 AMJ96_CH02998 144005d53edba61263ac93f22915be9c 155 Gene3D G3DSA:2.30.30.40 16 141 1.9E-39 T 12-10-2018 AMJ96_CH02998 144005d53edba61263ac93f22915be9c 155 SMART SM00260 13 147 1.2E-34 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMJ96_CH02998 144005d53edba61263ac93f22915be9c 155 SUPERFAMILY SSF50341 8 149 1.03E-38 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMJ96_CH01808 75179d1f780395a91bc9fa74cef1d7f5 258 Gene3D G3DSA:3.40.980.10 6 172 2.5E-55 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMJ96_CH01808 75179d1f780395a91bc9fa74cef1d7f5 258 Pfam PF00994 Probable molybdopterin binding domain 10 170 1.6E-34 T 12-10-2018 IPR001453 MoaB/Mog domain AMJ96_CH01808 75179d1f780395a91bc9fa74cef1d7f5 258 SUPERFAMILY SSF53218 7 202 3.93E-41 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMJ96_CH01808 75179d1f780395a91bc9fa74cef1d7f5 258 SMART SM00852 10 172 3.0E-32 T 12-10-2018 IPR001453 MoaB/Mog domain AMJ96_CH00757 6299f90c6800508fa3a95ca307bb4ddb 469 SMART SM00530 11 66 7.1E-13 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH00757 6299f90c6800508fa3a95ca307bb4ddb 469 PIRSF PIRSF019251 1 469 3.5E-132 T 12-10-2018 IPR026281 HTH-type transcriptional regulator RamB GO:0006355 AMJ96_CH00757 6299f90c6800508fa3a95ca307bb4ddb 469 Pfam PF09856 Predicted transcriptional regulator (DUF2083) 314 466 1.0E-53 T 12-10-2018 IPR018653 Domain of unknown function DUF2083,transcriptional regulator AMJ96_CH00757 6299f90c6800508fa3a95ca307bb4ddb 469 Pfam PF01381 Helix-turn-helix 12 66 1.4E-11 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH00757 6299f90c6800508fa3a95ca307bb4ddb 469 Pfam PF06114 IrrE N-terminal-like domain 191 312 3.0E-15 T 12-10-2018 IPR010359 IrrE N-terminal-like domain AMJ96_CH00757 6299f90c6800508fa3a95ca307bb4ddb 469 SUPERFAMILY SSF47413 5 70 4.56E-13 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH00757 6299f90c6800508fa3a95ca307bb4ddb 469 Gene3D G3DSA:1.10.260.40 7 70 1.6E-12 T 12-10-2018 AMJ96_CH03872 bb2105a9df018996dc492326739ce752 170 Pfam PF01047 MarR family 57 106 1.0E-11 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH03872 bb2105a9df018996dc492326739ce752 170 SMART SM00347 43 143 2.1E-15 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH03872 bb2105a9df018996dc492326739ce752 170 SUPERFAMILY SSF46785 25 160 3.17E-28 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03872 bb2105a9df018996dc492326739ce752 170 Gene3D G3DSA:1.10.10.10 7 163 8.3E-31 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03872 bb2105a9df018996dc492326739ce752 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 99 1.4E-7 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH03872 bb2105a9df018996dc492326739ce752 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 133 153 1.4E-7 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH03872 bb2105a9df018996dc492326739ce752 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 103 119 1.4E-7 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH03872 bb2105a9df018996dc492326739ce752 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 67 83 1.4E-7 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_PD00093 a9677667a187a1dd81be3b30ee7dcdf1 165 SUPERFAMILY SSF56300 1 135 1.72E-11 T 12-10-2018 AMJ96_PD00093 a9677667a187a1dd81be3b30ee7dcdf1 165 Gene3D G3DSA:3.60.21.10 1 162 2.3E-41 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like AMJ96_PD00093 a9677667a187a1dd81be3b30ee7dcdf1 165 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 3 131 1.9E-6 T 12-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 AMJ96_PD00253 eb3b9292b089248fc36a88f18e0240b0 286 Gene3D G3DSA:1.10.3720.10 46 284 9.7E-65 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00253 eb3b9292b089248fc36a88f18e0240b0 286 SUPERFAMILY SSF161098 50 277 1.07E-56 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00253 eb3b9292b089248fc36a88f18e0240b0 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 280 3.1E-12 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH04323 9af232a3e09f642d572796498960212f 389 TIGRFAM TIGR01027 proB: glutamate 5-kinase 11 371 1.2E-117 T 12-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMJ96_CH04323 9af232a3e09f642d572796498960212f 389 ProSitePatterns PS00902 Glutamate 5-kinase signature. 213 230 - T 12-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMJ96_CH04323 9af232a3e09f642d572796498960212f 389 PIRSF PIRSF000729 7 373 1.6E-118 T 12-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 AMJ96_CH04323 9af232a3e09f642d572796498960212f 389 PRINTS PR00474 Glutamate 5-kinase family signature 215 235 6.6E-45 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMJ96_CH04323 9af232a3e09f642d572796498960212f 389 PRINTS PR00474 Glutamate 5-kinase family signature 122 143 6.6E-45 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMJ96_CH04323 9af232a3e09f642d572796498960212f 389 PRINTS PR00474 Glutamate 5-kinase family signature 48 62 6.6E-45 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMJ96_CH04323 9af232a3e09f642d572796498960212f 389 PRINTS PR00474 Glutamate 5-kinase family signature 154 181 6.6E-45 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMJ96_CH04323 9af232a3e09f642d572796498960212f 389 PRINTS PR00474 Glutamate 5-kinase family signature 82 110 6.6E-45 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AMJ96_CH04323 9af232a3e09f642d572796498960212f 389 Pfam PF00696 Amino acid kinase family 12 240 3.4E-37 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMJ96_CH04323 9af232a3e09f642d572796498960212f 389 Pfam PF01472 PUA domain 282 355 2.3E-20 T 12-10-2018 IPR002478 PUA domain GO:0003723 AMJ96_CH04323 9af232a3e09f642d572796498960212f 389 Hamap MF_00456 Glutamate 5-kinase [proB]. 11 264 34.194 T 12-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AMJ96_CH04323 9af232a3e09f642d572796498960212f 389 SMART SM00359 282 364 2.1E-16 T 12-10-2018 IPR002478 PUA domain GO:0003723 AMJ96_CH04323 9af232a3e09f642d572796498960212f 389 SUPERFAMILY SSF53633 11 255 1.57E-58 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMJ96_CH04323 9af232a3e09f642d572796498960212f 389 SUPERFAMILY SSF88697 282 371 1.6E-23 T 12-10-2018 IPR015947 PUA-like superfamily AMJ96_CH04323 9af232a3e09f642d572796498960212f 389 Gene3D G3DSA:2.30.130.10 273 372 3.2E-31 T 12-10-2018 IPR036974 PUA domain superfamily GO:0003723 AMJ96_CH04323 9af232a3e09f642d572796498960212f 389 Gene3D G3DSA:3.40.1160.10 1 272 2.0E-76 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMJ96_PD00386 a31e0b6ba44aa4a20a63c79a683b9d51 343 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 288 332 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_PD00386 a31e0b6ba44aa4a20a63c79a683b9d51 343 SUPERFAMILY SSF46689 235 285 2.64E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00386 a31e0b6ba44aa4a20a63c79a683b9d51 343 Pfam PF12833 Helix-turn-helix domain 258 337 1.9E-23 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PD00386 a31e0b6ba44aa4a20a63c79a683b9d51 343 Pfam PF14525 AraC-binding-like domain 40 211 9.3E-16 T 12-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like AMJ96_PD00386 a31e0b6ba44aa4a20a63c79a683b9d51 343 SUPERFAMILY SSF46689 287 336 4.12E-6 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00386 a31e0b6ba44aa4a20a63c79a683b9d51 343 SMART SM00342 251 336 5.5E-26 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PD00386 a31e0b6ba44aa4a20a63c79a683b9d51 343 Gene3D G3DSA:1.10.10.60 235 340 2.1E-32 T 12-10-2018 AMJ96_CH02318 8f6281245f4635f647066383a1634d1a 370 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 5 370 34.832 T 12-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 AMJ96_CH02318 8f6281245f4635f647066383a1634d1a 370 SUPERFAMILY SSF53067 8 342 2.2E-16 T 12-10-2018 AMJ96_CH02318 8f6281245f4635f647066383a1634d1a 370 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 7 366 1.0E-78 T 12-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 AMJ96_CH02318 8f6281245f4635f647066383a1634d1a 370 Gene3D G3DSA:3.30.420.40 8 361 1.9E-105 T 12-10-2018 AMJ96_CH02318 8f6281245f4635f647066383a1634d1a 370 Gene3D G3DSA:3.30.420.40 151 330 1.9E-105 T 12-10-2018 AMJ96_PB00051 8ff3e71f61c8687f37a1576f2b56e777 165 Pfam PF00872 Transposase, Mutator family 4 151 2.1E-35 T 12-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 AMJ96_PB00245 cc7448b2020c749fa3ef833ed57d336d 495 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 19 490 3.7E-206 T 12-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath AMJ96_PB00245 cc7448b2020c749fa3ef833ed57d336d 495 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 66 490 3.1E-181 T 12-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath AMJ96_PD00605 ced3c9f704bcd975e66cd1cb9493987d 284 Gene3D G3DSA:1.10.3720.10 41 283 2.1E-64 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00605 ced3c9f704bcd975e66cd1cb9493987d 284 SUPERFAMILY SSF161098 44 271 2.62E-56 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00605 ced3c9f704bcd975e66cd1cb9493987d 284 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 73 273 1.6E-21 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02045 b1411f6d7a2f4951d5cf5607f72197cc 287 Gene3D G3DSA:3.30.470.10 1 119 2.0E-32 T 12-10-2018 AMJ96_CH02045 b1411f6d7a2f4951d5cf5607f72197cc 287 Gene3D G3DSA:3.20.10.10 125 285 9.6E-51 T 12-10-2018 AMJ96_CH02045 b1411f6d7a2f4951d5cf5607f72197cc 287 Pfam PF01063 Amino-transferase class IV 31 257 2.1E-46 T 12-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 AMJ96_CH02045 b1411f6d7a2f4951d5cf5607f72197cc 287 SUPERFAMILY SSF56752 2 281 3.4E-72 T 12-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 AMJ96_CH02212 51f7f4c56451219e8ac0e4be98b1c901 202 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 11 192 1.6E-66 T 12-10-2018 IPR022301 Integral membrane protein YjbE AMJ96_CH02212 51f7f4c56451219e8ac0e4be98b1c901 202 Pfam PF03741 Integral membrane protein TerC family 14 191 6.6E-43 T 12-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 AMJ96_CH02867 6276064f0f8e620b3cc1a10328f08a55 191 Pfam PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP 32 179 8.9E-42 T 12-10-2018 IPR010319 Transglutaminase-like cysteine peptidase, predicted AMJ96_CH02867 6276064f0f8e620b3cc1a10328f08a55 191 Gene3D G3DSA:3.10.620.30 37 186 1.6E-25 T 12-10-2018 AMJ96_CH02328 a730170f06e4fd15282389e1678e8964 106 Pfam PF04993 TfoX N-terminal domain 8 101 2.3E-29 T 12-10-2018 IPR007076 TfoX, N-terminal AMJ96_CH02328 a730170f06e4fd15282389e1678e8964 106 Gene3D G3DSA:3.30.1460.30 3 102 2.9E-31 T 12-10-2018 AMJ96_CH02328 a730170f06e4fd15282389e1678e8964 106 SUPERFAMILY SSF159894 5 102 1.8E-29 T 12-10-2018 AMJ96_CH01201 4238a7e79f82a4b03651cc7bf1a3ebc1 1102 SMART SM00454 2 60 1.2E-11 T 12-10-2018 IPR001660 Sterile alpha motif domain GO:0005515 AMJ96_CH01201 4238a7e79f82a4b03651cc7bf1a3ebc1 1102 SUPERFAMILY SSF55073 74 251 1.57E-45 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH01201 4238a7e79f82a4b03651cc7bf1a3ebc1 1102 SMART SM00044 43 240 8.6E-13 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH01201 4238a7e79f82a4b03651cc7bf1a3ebc1 1102 SUPERFAMILY SSF48452 854 1084 7.96E-9 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01201 4238a7e79f82a4b03651cc7bf1a3ebc1 1102 SUPERFAMILY SSF47769 2 58 3.49E-16 T 12-10-2018 IPR013761 Sterile alpha motif/pointed domain superfamily AMJ96_CH01201 4238a7e79f82a4b03651cc7bf1a3ebc1 1102 Gene3D G3DSA:1.10.150.50 2 66 4.7E-20 T 12-10-2018 AMJ96_CH01201 4238a7e79f82a4b03651cc7bf1a3ebc1 1102 Pfam PF13191 AAA ATPase domain 271 454 2.6E-18 T 12-10-2018 AMJ96_CH01201 4238a7e79f82a4b03651cc7bf1a3ebc1 1102 Pfam PF00536 SAM domain (Sterile alpha motif) 2 57 4.2E-16 T 12-10-2018 IPR001660 Sterile alpha motif domain GO:0005515 AMJ96_CH01201 4238a7e79f82a4b03651cc7bf1a3ebc1 1102 Gene3D G3DSA:3.30.70.1230 67 259 7.0E-53 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH01201 4238a7e79f82a4b03651cc7bf1a3ebc1 1102 SUPERFAMILY SSF52540 253 564 4.32E-16 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01201 4238a7e79f82a4b03651cc7bf1a3ebc1 1102 Gene3D G3DSA:1.25.40.10 801 1101 3.4E-15 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01201 4238a7e79f82a4b03651cc7bf1a3ebc1 1102 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 74 250 6.7E-26 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH00568 acbf05488698d1d64613642d9299b340 185 SUPERFAMILY SSF53597 2 183 3.8E-31 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMJ96_CH00568 acbf05488698d1d64613642d9299b340 185 Pfam PF01872 RibD C-terminal domain 3 176 2.8E-21 T 12-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMJ96_CH00568 acbf05488698d1d64613642d9299b340 185 Gene3D G3DSA:3.40.430.10 2 180 9.0E-39 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMJ96_PC00263 ff4dea78054ac532952ce1812c08e937 443 SUPERFAMILY SSF53474 50 442 8.55E-102 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PC00263 ff4dea78054ac532952ce1812c08e937 443 Pfam PF06441 Epoxide hydrolase N terminus 54 159 2.1E-36 T 12-10-2018 IPR010497 Epoxide hydrolase, N-terminal Reactome: R-HSA-211945 AMJ96_PC00263 ff4dea78054ac532952ce1812c08e937 443 Gene3D G3DSA:3.40.50.1820 51 443 4.9E-137 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PC00263 ff4dea78054ac532952ce1812c08e937 443 PRINTS PR00412 Epoxide hydrolase signature 384 400 3.5E-13 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_PC00263 ff4dea78054ac532952ce1812c08e937 443 PRINTS PR00412 Epoxide hydrolase signature 150 168 3.5E-13 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_PC00263 ff4dea78054ac532952ce1812c08e937 443 PRINTS PR00412 Epoxide hydrolase signature 416 438 3.5E-13 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_PC00263 ff4dea78054ac532952ce1812c08e937 443 PRINTS PR00412 Epoxide hydrolase signature 179 194 3.5E-13 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_PC00263 ff4dea78054ac532952ce1812c08e937 443 PIRSF PIRSF001112 5 443 4.0E-148 T 12-10-2018 IPR016292 Epoxide hydrolase GO:0033961 Reactome: R-HSA-211945 AMJ96_PC00449 034892b823b73dea2bd2e2f2463f1e30 513 Gene3D G3DSA:1.20.58.100 411 495 1.1E-8 T 12-10-2018 AMJ96_PC00449 034892b823b73dea2bd2e2f2463f1e30 513 SUPERFAMILY SSF46977 418 482 6.02E-10 T 12-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_PC00449 034892b823b73dea2bd2e2f2463f1e30 513 Pfam PF00890 FAD binding domain 13 378 1.2E-81 T 12-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_PC00449 034892b823b73dea2bd2e2f2463f1e30 513 Gene3D G3DSA:3.50.50.60 13 390 2.2E-127 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00449 034892b823b73dea2bd2e2f2463f1e30 513 Gene3D G3DSA:3.90.700.10 237 344 2.2E-127 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_PC00449 034892b823b73dea2bd2e2f2463f1e30 513 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 188 206 6.4E-7 T 12-10-2018 AMJ96_PC00449 034892b823b73dea2bd2e2f2463f1e30 513 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 6.4E-7 T 12-10-2018 AMJ96_PC00449 034892b823b73dea2bd2e2f2463f1e30 513 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 341 363 6.4E-7 T 12-10-2018 AMJ96_PC00449 034892b823b73dea2bd2e2f2463f1e30 513 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 12 481 2.4E-140 T 12-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 AMJ96_PC00449 034892b823b73dea2bd2e2f2463f1e30 513 SUPERFAMILY SSF51905 13 394 9.61E-48 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00449 034892b823b73dea2bd2e2f2463f1e30 513 SUPERFAMILY SSF56425 227 338 7.03E-34 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_PA00282 d0265a4a21565ea2375ae6a5647bf2b7 340 SUPERFAMILY SSF55874 202 335 3.54E-27 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PA00282 d0265a4a21565ea2375ae6a5647bf2b7 340 Gene3D G3DSA:3.30.565.10 201 336 7.0E-28 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PA00282 d0265a4a21565ea2375ae6a5647bf2b7 340 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 239 335 1.8E-16 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PA00282 d0265a4a21565ea2375ae6a5647bf2b7 340 Gene3D G3DSA:1.20.1480.50 34 125 2.7E-7 T 12-10-2018 AMJ96_PA00282 d0265a4a21565ea2375ae6a5647bf2b7 340 Pfam PF00512 His Kinase A (phospho-acceptor) domain 128 193 8.9E-14 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PA00282 d0265a4a21565ea2375ae6a5647bf2b7 340 Gene3D G3DSA:1.10.287.130 126 194 3.6E-13 T 12-10-2018 AMJ96_PA00282 d0265a4a21565ea2375ae6a5647bf2b7 340 PRINTS PR00344 Bacterial sensor protein C-terminal signature 266 280 1.1E-17 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PA00282 d0265a4a21565ea2375ae6a5647bf2b7 340 PRINTS PR00344 Bacterial sensor protein C-terminal signature 284 294 1.1E-17 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PA00282 d0265a4a21565ea2375ae6a5647bf2b7 340 PRINTS PR00344 Bacterial sensor protein C-terminal signature 321 334 1.1E-17 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PA00282 d0265a4a21565ea2375ae6a5647bf2b7 340 PRINTS PR00344 Bacterial sensor protein C-terminal signature 297 315 1.1E-17 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PA00282 d0265a4a21565ea2375ae6a5647bf2b7 340 SMART SM00387 231 337 6.1E-22 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PA00282 d0265a4a21565ea2375ae6a5647bf2b7 340 SUPERFAMILY SSF47384 108 193 1.39E-14 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_PA00282 d0265a4a21565ea2375ae6a5647bf2b7 340 SMART SM00388 125 195 2.4E-12 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH00835 f57daa4f3d05104e9a0f461724c583d6 230 SUPERFAMILY SSF141523 67 205 1.44E-32 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH00835 f57daa4f3d05104e9a0f461724c583d6 230 Pfam PF03734 L,D-transpeptidase catalytic domain 69 204 6.3E-16 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMJ96_CH00835 f57daa4f3d05104e9a0f461724c583d6 230 Gene3D G3DSA:2.40.440.10 20 220 7.1E-44 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH02629 6a73f9139565bf8a40f7ba9259332e98 119 Pfam PF11042 Protein of unknown function (DUF2750) 9 112 1.2E-24 T 12-10-2018 IPR021284 Protein of unknown function DUF2750 AMJ96_CH02956 08f029721735475f2d4d0b936cfa7d14 308 PRINTS PR00146 Dihydrodipicolinate synthase signature 76 94 1.7E-9 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH02956 08f029721735475f2d4d0b936cfa7d14 308 PRINTS PR00146 Dihydrodipicolinate synthase signature 133 150 1.7E-9 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH02956 08f029721735475f2d4d0b936cfa7d14 308 PRINTS PR00146 Dihydrodipicolinate synthase signature 108 124 1.7E-9 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH02956 08f029721735475f2d4d0b936cfa7d14 308 PRINTS PR00146 Dihydrodipicolinate synthase signature 40 61 1.7E-9 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH02956 08f029721735475f2d4d0b936cfa7d14 308 Gene3D G3DSA:3.20.20.70 3 300 3.8E-98 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH02956 08f029721735475f2d4d0b936cfa7d14 308 Pfam PF00701 Dihydrodipicolinate synthetase family 7 292 2.9E-43 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH02956 08f029721735475f2d4d0b936cfa7d14 308 SUPERFAMILY SSF51569 3 294 4.5E-74 T 12-10-2018 AMJ96_CH02956 08f029721735475f2d4d0b936cfa7d14 308 PIRSF PIRSF001365 4 306 1.3E-63 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH02956 08f029721735475f2d4d0b936cfa7d14 308 SMART SM01130 6 296 6.5E-69 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH03350 7de4b68c81bf9d3b894c781f811b15c0 639 SUPERFAMILY SSF52540 195 424 7.99E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03350 7de4b68c81bf9d3b894c781f811b15c0 639 SMART SM00382 231 371 2.1E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03350 7de4b68c81bf9d3b894c781f811b15c0 639 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 235 369 1.1E-28 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMJ96_CH03350 7de4b68c81bf9d3b894c781f811b15c0 639 Gene3D G3DSA:1.20.58.760 438 631 2.7E-31 T 12-10-2018 AMJ96_CH03350 7de4b68c81bf9d3b894c781f811b15c0 639 Pfam PF01434 Peptidase family M41 447 620 9.0E-14 T 12-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AMJ96_CH03350 7de4b68c81bf9d3b894c781f811b15c0 639 Gene3D G3DSA:1.10.8.60 371 434 1.1E-8 T 12-10-2018 AMJ96_CH03350 7de4b68c81bf9d3b894c781f811b15c0 639 Gene3D G3DSA:3.40.50.300 186 370 6.1E-38 T 12-10-2018 AMJ96_CH03350 7de4b68c81bf9d3b894c781f811b15c0 639 SUPERFAMILY SSF140990 440 625 8.24E-25 T 12-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AMJ96_CH00346 c884ae5c5d7869f1b0952173523bd393 527 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 57 72 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site AMJ96_CH00346 c884ae5c5d7869f1b0952173523bd393 527 PRINTS PR00315 GTP-binding elongation factor signature 100 111 6.9E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH00346 c884ae5c5d7869f1b0952173523bd393 527 PRINTS PR00315 GTP-binding elongation factor signature 64 72 6.9E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH00346 c884ae5c5d7869f1b0952173523bd393 527 PRINTS PR00315 GTP-binding elongation factor signature 136 145 6.9E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH00346 c884ae5c5d7869f1b0952173523bd393 527 PRINTS PR00315 GTP-binding elongation factor signature 84 94 6.9E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH00346 c884ae5c5d7869f1b0952173523bd393 527 PRINTS PR00315 GTP-binding elongation factor signature 14 27 6.9E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH00346 c884ae5c5d7869f1b0952173523bd393 527 Gene3D G3DSA:3.40.50.300 109 267 4.0E-99 T 12-10-2018 AMJ96_CH00346 c884ae5c5d7869f1b0952173523bd393 527 SUPERFAMILY SSF50447 254 385 1.7E-26 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMJ96_CH00346 c884ae5c5d7869f1b0952173523bd393 527 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 3 519 48.266 T 12-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 AMJ96_CH00346 c884ae5c5d7869f1b0952173523bd393 527 Pfam PF03144 Elongation factor Tu domain 2 306 372 3.1E-9 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AMJ96_CH00346 c884ae5c5d7869f1b0952173523bd393 527 SUPERFAMILY SSF54980 385 456 1.51E-13 T 12-10-2018 IPR035647 EF-G domain III/V-like AMJ96_CH00346 c884ae5c5d7869f1b0952173523bd393 527 Pfam PF16658 Class II release factor RF3, C-terminal domain 379 505 4.6E-40 T 12-10-2018 IPR032090 Peptide chain release factor 3, C-terminal AMJ96_CH00346 c884ae5c5d7869f1b0952173523bd393 527 Pfam PF00009 Elongation factor Tu GTP binding domain 12 269 6.6E-51 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AMJ96_CH00346 c884ae5c5d7869f1b0952173523bd393 527 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 6 520 3.3E-195 T 12-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 AMJ96_CH00346 c884ae5c5d7869f1b0952173523bd393 527 Gene3D G3DSA:3.30.70.3280 382 521 3.5E-43 T 12-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily AMJ96_CH00346 c884ae5c5d7869f1b0952173523bd393 527 Gene3D G3DSA:3.40.50.300 71 371 4.0E-99 T 12-10-2018 AMJ96_CH00346 c884ae5c5d7869f1b0952173523bd393 527 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 15 158 1.8E-23 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMJ96_CH00346 c884ae5c5d7869f1b0952173523bd393 527 SUPERFAMILY SSF52540 9 269 3.36E-83 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00079 95bf1140e6176ef90387d96776da503b 278 Gene3D G3DSA:3.20.20.60 1 278 8.6E-83 T 12-10-2018 AMJ96_PA00079 95bf1140e6176ef90387d96776da503b 278 SUPERFAMILY SSF51621 2 230 4.32E-56 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMJ96_PA00079 95bf1140e6176ef90387d96776da503b 278 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 4 218 5.0E-26 T 12-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 AMJ96_PA00079 95bf1140e6176ef90387d96776da503b 278 PIRSF PIRSF015582 1 278 7.2E-72 T 12-10-2018 IPR011206 Citrate lyase beta subunit-like AMJ96_CH00621 b962672fd23df653f875bee012d53037 206 Pfam PF02545 Maf-like protein 6 192 5.9E-49 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 AMJ96_CH00621 b962672fd23df653f875bee012d53037 206 TIGRFAM TIGR00172 maf: septum formation protein Maf 4 192 2.1E-46 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 AMJ96_CH00621 b962672fd23df653f875bee012d53037 206 SUPERFAMILY SSF52972 4 193 3.6E-56 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMJ96_CH00621 b962672fd23df653f875bee012d53037 206 Hamap MF_00528 Septum formation protein Maf [maf]. 6 199 31.886 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 AMJ96_CH00621 b962672fd23df653f875bee012d53037 206 Gene3D G3DSA:3.90.950.10 5 200 4.2E-57 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMJ96_CH00621 b962672fd23df653f875bee012d53037 206 PIRSF PIRSF006305 1 200 9.1E-50 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 AMJ96_CH00629 912137358558c16c83eab082b8ed8dd7 161 SUPERFAMILY SSF50475 3 90 2.45E-7 T 12-10-2018 AMJ96_CH00629 912137358558c16c83eab082b8ed8dd7 161 Gene3D G3DSA:2.30.110.10 3 153 3.7E-12 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMJ96_CH04052 87d4911debda2ceb025c237da7b132ad 139 SUPERFAMILY SSF55729 24 121 5.15E-17 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH04052 87d4911debda2ceb025c237da7b132ad 139 Pfam PF00583 Acetyltransferase (GNAT) family 35 104 4.9E-8 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH04052 87d4911debda2ceb025c237da7b132ad 139 Gene3D G3DSA:3.40.630.30 2 136 8.4E-16 T 12-10-2018 AMJ96_CH02178 142851f1369b6df1c5160902daa0858a 376 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 7 367 3.0E-139 T 12-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMJ96_CH02178 142851f1369b6df1c5160902daa0858a 376 Gene3D G3DSA:3.20.20.105 1 371 4.7E-156 T 12-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMJ96_CH02178 142851f1369b6df1c5160902daa0858a 376 SUPERFAMILY SSF51713 5 366 6.8E-151 T 12-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMJ96_CH02178 142851f1369b6df1c5160902daa0858a 376 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 5 367 53.626 T 12-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMJ96_CH02178 142851f1369b6df1c5160902daa0858a 376 Pfam PF01702 Queuine tRNA-ribosyltransferase 131 363 1.4E-85 T 12-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMJ96_CH02178 142851f1369b6df1c5160902daa0858a 376 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 7 367 4.4E-143 T 12-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AMJ96_PD00688 237264b096d0720b861f265e9fe0c83b 227 Pfam PF00578 AhpC/TSA family 13 117 1.2E-10 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMJ96_PD00688 237264b096d0720b861f265e9fe0c83b 227 SUPERFAMILY SSF52833 10 204 1.81E-17 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_PA00242 813dfdf19a81e2d002d71fe5e0fec0db 301 Gene3D G3DSA:3.20.20.150 3 293 7.5E-49 T 12-10-2018 AMJ96_PA00242 813dfdf19a81e2d002d71fe5e0fec0db 301 SUPERFAMILY SSF51658 1 298 1.96E-60 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_PA00242 813dfdf19a81e2d002d71fe5e0fec0db 301 Pfam PF01261 Xylose isomerase-like TIM barrel 20 250 9.4E-41 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMJ96_CH01870 dd43cf00217756a181fbd0e326d7f548 337 Gene3D G3DSA:3.20.20.300 5 331 6.8E-84 T 12-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 AMJ96_CH01870 dd43cf00217756a181fbd0e326d7f548 337 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 31 296 1.7E-44 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AMJ96_CH01870 dd43cf00217756a181fbd0e326d7f548 337 SUPERFAMILY SSF51445 6 291 5.37E-65 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_PD00695 52846d7f3169fd022b5c651379634703 285 SUPERFAMILY SSF51658 5 278 6.08E-48 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_PD00695 52846d7f3169fd022b5c651379634703 285 Pfam PF07582 AP endonuclease family 2 C terminus 231 256 1.2E-4 T 12-10-2018 IPR011418 AP endonuclease, family 2, C-terminal AMJ96_PD00695 52846d7f3169fd022b5c651379634703 285 Gene3D G3DSA:3.20.20.150 2 281 2.9E-57 T 12-10-2018 AMJ96_PD00695 52846d7f3169fd022b5c651379634703 285 Pfam PF01261 Xylose isomerase-like TIM barrel 20 221 6.5E-30 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMJ96_CH03841 7dc3e1da1fb7bf8d05d98f908ae91a71 735 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 639 733 3.0E-20 T 12-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 AMJ96_CH03841 7dc3e1da1fb7bf8d05d98f908ae91a71 735 Gene3D G3DSA:2.60.40.10 14 231 2.9E-64 T 12-10-2018 IPR013783 Immunoglobulin-like fold AMJ96_CH03841 7dc3e1da1fb7bf8d05d98f908ae91a71 735 Pfam PF00128 Alpha amylase, catalytic domain 286 358 1.0E-7 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_CH03841 7dc3e1da1fb7bf8d05d98f908ae91a71 735 SUPERFAMILY SSF51445 182 627 1.68E-107 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH03841 7dc3e1da1fb7bf8d05d98f908ae91a71 735 SUPERFAMILY SSF81296 127 229 1.03E-30 T 12-10-2018 IPR014756 Immunoglobulin E-set AMJ96_CH03841 7dc3e1da1fb7bf8d05d98f908ae91a71 735 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 133 217 8.9E-22 T 12-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 AMJ96_CH03841 7dc3e1da1fb7bf8d05d98f908ae91a71 735 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 110 734 43.94 T 12-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 AMJ96_CH03841 7dc3e1da1fb7bf8d05d98f908ae91a71 735 SUPERFAMILY SSF81296 25 121 7.35E-14 T 12-10-2018 IPR014756 Immunoglobulin E-set AMJ96_CH03841 7dc3e1da1fb7bf8d05d98f908ae91a71 735 Gene3D G3DSA:3.20.20.80 245 623 7.7E-162 T 12-10-2018 AMJ96_CH03841 7dc3e1da1fb7bf8d05d98f908ae91a71 735 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 119 731 4.1E-267 T 12-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 AMJ96_CH03841 7dc3e1da1fb7bf8d05d98f908ae91a71 735 PIRSF PIRSF000463 17 735 3.9E-281 T 12-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 AMJ96_CH03841 7dc3e1da1fb7bf8d05d98f908ae91a71 735 SUPERFAMILY SSF51011 635 734 1.8E-28 T 12-10-2018 AMJ96_CH03841 7dc3e1da1fb7bf8d05d98f908ae91a71 735 Gene3D G3DSA:2.60.40.1180 634 735 4.9E-30 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta AMJ96_CH03841 7dc3e1da1fb7bf8d05d98f908ae91a71 735 SMART SM00642 261 605 2.6E-6 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_PB00371 017b9c1f19316f7bfeb7af28b9ac4122 161 Pfam PF05751 FixH 7 147 5.0E-32 T 12-10-2018 IPR008620 Nitrogen fixation protein FixH AMJ96_PB00371 017b9c1f19316f7bfeb7af28b9ac4122 161 PIRSF PIRSF011386 1 158 5.8E-63 T 12-10-2018 IPR018037 Nitrogen fixation protein FixH, Proteobacterial AMJ96_CH00766 b6f8a37457efc3c3402998ada9fb7c51 149 Pfam PF09361 Phasin protein 41 137 1.8E-17 T 12-10-2018 IPR018968 Phasin AMJ96_CH00766 b6f8a37457efc3c3402998ada9fb7c51 149 TIGRFAM TIGR01985 phasin_2: phasin 21 141 7.4E-31 T 12-10-2018 IPR010234 Phasin, subfamily 2 AMJ96_CH03625 22536f6331fad3b12a79a1f1c9055688 404 Gene3D G3DSA:1.10.645.20 17 404 2.4E-166 T 12-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03625 22536f6331fad3b12a79a1f1c9055688 404 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 19 404 8.8E-185 T 12-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03625 22536f6331fad3b12a79a1f1c9055688 404 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 133 404 6.9E-114 T 12-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03625 22536f6331fad3b12a79a1f1c9055688 404 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 11 404 49.134 T 12-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03625 22536f6331fad3b12a79a1f1c9055688 404 SUPERFAMILY SSF56762 29 403 1.44E-135 T 12-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH00848 5f8aac24dc25a3efea4cd719622c69a6 236 Gene3D G3DSA:1.20.1050.10 106 222 3.6E-101 T 12-10-2018 AMJ96_CH00848 5f8aac24dc25a3efea4cd719622c69a6 236 Gene3D G3DSA:3.40.30.10 7 232 3.6E-101 T 12-10-2018 AMJ96_CH00848 5f8aac24dc25a3efea4cd719622c69a6 236 SUPERFAMILY SSF47616 96 230 1.95E-33 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMJ96_CH00848 5f8aac24dc25a3efea4cd719622c69a6 236 SUPERFAMILY SSF52833 11 103 1.51E-22 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH00848 5f8aac24dc25a3efea4cd719622c69a6 236 Pfam PF00043 Glutathione S-transferase, C-terminal domain 151 223 3.6E-13 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMJ96_CH00848 5f8aac24dc25a3efea4cd719622c69a6 236 Pfam PF02798 Glutathione S-transferase, N-terminal domain 22 99 4.1E-13 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMJ96_CH01612 755b265f4f6eb842561ccacdaeef24d0 195 Pfam PF13238 AAA domain 27 143 4.4E-13 T 12-10-2018 AMJ96_CH01612 755b265f4f6eb842561ccacdaeef24d0 195 Gene3D G3DSA:3.40.50.300 24 195 1.2E-16 T 12-10-2018 AMJ96_CH01612 755b265f4f6eb842561ccacdaeef24d0 195 SUPERFAMILY SSF52540 25 191 5.65E-18 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00021 e3044d25817be866f4aa02a2d3f9fc9b 406 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 13 402 51.983 T 12-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMJ96_CH00021 e3044d25817be866f4aa02a2d3f9fc9b 406 Gene3D G3DSA:3.40.50.1100 21 217 4.2E-186 T 12-10-2018 AMJ96_CH00021 e3044d25817be866f4aa02a2d3f9fc9b 406 PIRSF PIRSF001413 11 405 2.3E-159 T 12-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMJ96_CH00021 e3044d25817be866f4aa02a2d3f9fc9b 406 SUPERFAMILY SSF53686 14 400 1.83E-147 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMJ96_CH00021 e3044d25817be866f4aa02a2d3f9fc9b 406 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 18 400 2.1E-191 T 12-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMJ96_CH00021 e3044d25817be866f4aa02a2d3f9fc9b 406 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 65 389 1.7E-46 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMJ96_CH00021 e3044d25817be866f4aa02a2d3f9fc9b 406 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 92 106 - T 12-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AMJ96_CH00021 e3044d25817be866f4aa02a2d3f9fc9b 406 Gene3D G3DSA:3.40.50.1100 65 395 4.2E-186 T 12-10-2018 AMJ96_PC00155 ec1bb2f4158fc4080155c9d157a4fc71 277 Pfam PF01636 Phosphotransferase enzyme family 80 188 5.6E-12 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase AMJ96_PC00155 ec1bb2f4158fc4080155c9d157a4fc71 277 SUPERFAMILY SSF56112 7 229 3.06E-20 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily AMJ96_PC00155 ec1bb2f4158fc4080155c9d157a4fc71 277 Gene3D G3DSA:1.10.510.10 89 209 6.3E-10 T 12-10-2018 AMJ96_CH02187 7bf81845bc20bc1bea37e1ab653a0cfc 340 Pfam PF13343 Bacterial extracellular solute-binding protein 74 317 5.0E-32 T 12-10-2018 AMJ96_CH02187 7bf81845bc20bc1bea37e1ab653a0cfc 340 SUPERFAMILY SSF53850 27 320 1.61E-67 T 12-10-2018 AMJ96_CH02187 7bf81845bc20bc1bea37e1ab653a0cfc 340 Gene3D G3DSA:3.40.190.10 29 303 1.7E-99 T 12-10-2018 AMJ96_CH02187 7bf81845bc20bc1bea37e1ab653a0cfc 340 Gene3D G3DSA:3.40.190.10 131 317 1.7E-99 T 12-10-2018 AMJ96_CH02187 7bf81845bc20bc1bea37e1ab653a0cfc 340 PIRSF PIRSF002825 1 336 1.9E-58 T 12-10-2018 IPR026045 Ferric binding protein AMJ96_CH00622 5242c10cd05f7831eac6b9f87bd391ad 70 Gene3D G3DSA:3.30.50.10 14 70 1.7E-15 T 12-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 AMJ96_CH00622 5242c10cd05f7831eac6b9f87bd391ad 70 Pfam PF03884 DNA gyrase inhibitor YacG 19 62 2.9E-14 T 12-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 AMJ96_CH00622 5242c10cd05f7831eac6b9f87bd391ad 70 SUPERFAMILY SSF57716 15 68 1.08E-15 T 12-10-2018 AMJ96_CH00622 5242c10cd05f7831eac6b9f87bd391ad 70 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 14 69 17.212 T 12-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 AMJ96_PA00210 767824cdafe46659157c4216b0decbaa 656 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 413 566 2.1E-49 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_PA00210 767824cdafe46659157c4216b0decbaa 656 Gene3D G3DSA:1.20.1480.50 177 276 1.3E-13 T 12-10-2018 AMJ96_PA00210 767824cdafe46659157c4216b0decbaa 656 SMART SM00283 353 600 1.2E-101 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_PA00210 767824cdafe46659157c4216b0decbaa 656 Pfam PF12729 Four helix bundle sensory module for signal transduction 8 183 4.4E-14 T 12-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain AMJ96_PA00210 767824cdafe46659157c4216b0decbaa 656 SMART SM00304 300 352 0.064 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PA00210 767824cdafe46659157c4216b0decbaa 656 SMART SM00304 218 271 3.5E-5 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PA00210 767824cdafe46659157c4216b0decbaa 656 Pfam PF00672 HAMP domain 218 266 4.9E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PA00210 767824cdafe46659157c4216b0decbaa 656 SUPERFAMILY SSF58104 320 601 4.12E-68 T 12-10-2018 AMJ96_PA00210 767824cdafe46659157c4216b0decbaa 656 SUPERFAMILY SSF158472 218 266 1.57E-6 T 12-10-2018 AMJ96_PA00210 767824cdafe46659157c4216b0decbaa 656 Gene3D G3DSA:1.10.287.950 303 602 3.5E-78 T 12-10-2018 AMJ96_CH01353 b2d7436bed4ec983e2333fe7336a20b8 457 SMART SM00116 200 248 2.2E-6 T 12-10-2018 IPR000644 CBS domain AMJ96_CH01353 b2d7436bed4ec983e2333fe7336a20b8 457 Gene3D G3DSA:1.25.60.10 14 122 2.3E-8 T 12-10-2018 IPR038076 MgtE, N-terminal domain superfamily AMJ96_CH01353 b2d7436bed4ec983e2333fe7336a20b8 457 Pfam PF03448 MgtE intracellular N domain 26 124 1.3E-17 T 12-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain AMJ96_CH01353 b2d7436bed4ec983e2333fe7336a20b8 457 Gene3D G3DSA:3.10.580.10 124 252 4.4E-36 T 12-10-2018 AMJ96_CH01353 b2d7436bed4ec983e2333fe7336a20b8 457 SMART SM00924 24 127 6.1E-21 T 12-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain AMJ96_CH01353 b2d7436bed4ec983e2333fe7336a20b8 457 TIGRFAM TIGR00400 mgtE: magnesium transporter 14 452 7.6E-105 T 12-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 AMJ96_CH01353 b2d7436bed4ec983e2333fe7336a20b8 457 Pfam PF00571 CBS domain 201 245 1.9E-7 T 12-10-2018 IPR000644 CBS domain AMJ96_CH01353 b2d7436bed4ec983e2333fe7336a20b8 457 Pfam PF00571 CBS domain 128 184 2.5E-5 T 12-10-2018 IPR000644 CBS domain AMJ96_CH01353 b2d7436bed4ec983e2333fe7336a20b8 457 SUPERFAMILY SSF54631 126 268 8.12E-25 T 12-10-2018 AMJ96_CH01353 b2d7436bed4ec983e2333fe7336a20b8 457 Pfam PF01769 Divalent cation transporter 315 445 1.1E-30 T 12-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 AMJ96_CH01353 b2d7436bed4ec983e2333fe7336a20b8 457 Gene3D G3DSA:1.10.357.20 267 453 2.0E-58 T 12-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain AMJ96_CH01353 b2d7436bed4ec983e2333fe7336a20b8 457 SUPERFAMILY SSF158791 17 124 2.09E-16 T 12-10-2018 AMJ96_CH01353 b2d7436bed4ec983e2333fe7336a20b8 457 SUPERFAMILY SSF161093 275 452 9.02E-49 T 12-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 AMJ96_CH03587 d815670e0d1f9c4a1aef69f1823b93ef 451 Pfam PF13416 Bacterial extracellular solute-binding protein 48 358 7.5E-34 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH03587 d815670e0d1f9c4a1aef69f1823b93ef 451 SUPERFAMILY SSF53850 24 435 1.43E-56 T 12-10-2018 AMJ96_CH03587 d815670e0d1f9c4a1aef69f1823b93ef 451 Gene3D G3DSA:3.40.190.10 147 432 1.3E-94 T 12-10-2018 AMJ96_CH03587 d815670e0d1f9c4a1aef69f1823b93ef 451 Gene3D G3DSA:3.40.190.10 32 392 1.3E-94 T 12-10-2018 AMJ96_CH02225 597c44ab8e780cdd3120c4643c1e9ea6 268 Pfam PF01841 Transglutaminase-like superfamily 127 225 2.1E-18 T 12-10-2018 IPR002931 Transglutaminase-like AMJ96_CH02225 597c44ab8e780cdd3120c4643c1e9ea6 268 SUPERFAMILY SSF54001 50 253 1.26E-39 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMJ96_CH02225 597c44ab8e780cdd3120c4643c1e9ea6 268 SMART SM00460 161 227 4.8E-13 T 12-10-2018 IPR002931 Transglutaminase-like AMJ96_CH02225 597c44ab8e780cdd3120c4643c1e9ea6 268 Gene3D G3DSA:3.10.620.30 79 247 5.5E-72 T 12-10-2018 AMJ96_CH02225 597c44ab8e780cdd3120c4643c1e9ea6 268 Gene3D G3DSA:2.60.40.2250 9 256 5.5E-72 T 12-10-2018 AMJ96_PA00137 ae434a76601a50e3b533cd8b61b9b943 555 Pfam PF04234 CopC domain 58 148 3.0E-17 T 12-10-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 AMJ96_PA00137 ae434a76601a50e3b533cd8b61b9b943 555 Pfam PF05425 Copper resistance protein D 337 435 1.3E-17 T 12-10-2018 IPR008457 Copper resistance protein D GO:0016021 AMJ96_PA00137 ae434a76601a50e3b533cd8b61b9b943 555 SUPERFAMILY SSF81296 57 148 9.8E-16 T 12-10-2018 IPR014756 Immunoglobulin E-set AMJ96_PA00137 ae434a76601a50e3b533cd8b61b9b943 555 Gene3D G3DSA:2.60.40.1220 58 153 2.9E-14 T 12-10-2018 AMJ96_PA00020 f44c6afda04a940d4dbf7e01b526dd07 262 Gene3D G3DSA:3.40.50.300 1 261 3.3E-60 T 12-10-2018 AMJ96_PA00020 f44c6afda04a940d4dbf7e01b526dd07 262 SUPERFAMILY SSF52540 1 216 1.05E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00020 f44c6afda04a940d4dbf7e01b526dd07 262 Pfam PF00005 ABC transporter 22 161 1.0E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00020 f44c6afda04a940d4dbf7e01b526dd07 262 SMART SM00382 31 212 1.1E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00020 f44c6afda04a940d4dbf7e01b526dd07 262 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03020 4fcc8c5a5276e1273c431c9155adbadb 486 Pfam PF01225 Mur ligase family, catalytic domain 27 98 1.4E-7 T 12-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AMJ96_CH03020 4fcc8c5a5276e1273c431c9155adbadb 486 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 1 481 30.946 T 12-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 AMJ96_CH03020 4fcc8c5a5276e1273c431c9155adbadb 486 Gene3D G3DSA:3.40.1190.10 101 329 2.4E-64 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMJ96_CH03020 4fcc8c5a5276e1273c431c9155adbadb 486 Pfam PF08245 Mur ligase middle domain 108 310 3.3E-49 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 AMJ96_CH03020 4fcc8c5a5276e1273c431c9155adbadb 486 SUPERFAMILY SSF63418 26 100 3.01E-18 T 12-10-2018 IPR035911 MurE/MurF, N-terminal AMJ96_CH03020 4fcc8c5a5276e1273c431c9155adbadb 486 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 26 481 1.0E-137 T 12-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 AMJ96_CH03020 4fcc8c5a5276e1273c431c9155adbadb 486 Pfam PF02875 Mur ligase family, glutamate ligase domain 332 417 1.6E-22 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 AMJ96_CH03020 4fcc8c5a5276e1273c431c9155adbadb 486 Gene3D G3DSA:3.90.190.20 337 486 2.5E-55 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMJ96_CH03020 4fcc8c5a5276e1273c431c9155adbadb 486 SUPERFAMILY SSF53244 333 484 1.01E-45 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AMJ96_CH03020 4fcc8c5a5276e1273c431c9155adbadb 486 Gene3D G3DSA:3.40.1390.10 8 99 9.0E-19 T 12-10-2018 AMJ96_CH03020 4fcc8c5a5276e1273c431c9155adbadb 486 SUPERFAMILY SSF53623 101 329 1.02E-68 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 AMJ96_CH03664 2e82f9c37b37f7e1ae4e95105a6778ba 501 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 438 3.8E-147 T 12-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane AMJ96_PC00271 eef57218e99d4834b84d9ddf5ac4228f 151 SUPERFAMILY SSF55804 1 143 1.83E-33 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AMJ96_PC00271 eef57218e99d4834b84d9ddf5ac4228f 151 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 143 8.9E-30 T 12-10-2018 IPR002178 PTS EIIA type-2 domain AMJ96_PC00271 eef57218e99d4834b84d9ddf5ac4228f 151 Gene3D G3DSA:3.40.930.10 1 149 4.7E-43 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AMJ96_PC00271 eef57218e99d4834b84d9ddf5ac4228f 151 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 51 67 - T 12-10-2018 IPR002178 PTS EIIA type-2 domain AMJ96_CH01545 68f3e0226b23ceaf80e0df5c747ef305 293 SUPERFAMILY SSF103481 50 146 4.58E-11 T 12-10-2018 AMJ96_CH01545 68f3e0226b23ceaf80e0df5c747ef305 293 Pfam PF00892 EamA-like transporter family 34 143 1.9E-7 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH01545 68f3e0226b23ceaf80e0df5c747ef305 293 SUPERFAMILY SSF103481 185 281 1.31E-5 T 12-10-2018 AMJ96_PD00692 bcb1985221ca67c1f20f7794a38a3903 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 299 5.9E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00692 bcb1985221ca67c1f20f7794a38a3903 309 SUPERFAMILY SSF161098 70 297 1.83E-52 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00692 bcb1985221ca67c1f20f7794a38a3903 309 Gene3D G3DSA:1.10.3720.10 62 306 6.7E-56 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00329 3cb92e603d050bc3b0b029e5aa56387f 235 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 6 221 1.8E-47 T 12-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMJ96_CH00329 3cb92e603d050bc3b0b029e5aa56387f 235 SMART SM00934 6 222 7.8E-81 T 12-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMJ96_CH00329 3cb92e603d050bc3b0b029e5aa56387f 235 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 4 227 34.937 T 12-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMJ96_CH00329 3cb92e603d050bc3b0b029e5aa56387f 235 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 58 71 - T 12-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMJ96_CH00329 3cb92e603d050bc3b0b029e5aa56387f 235 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 7 222 4.5E-63 T 12-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMJ96_CH00329 3cb92e603d050bc3b0b029e5aa56387f 235 Gene3D G3DSA:3.20.20.70 1 227 8.4E-75 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH00329 3cb92e603d050bc3b0b029e5aa56387f 235 SUPERFAMILY SSF51366 5 226 1.57E-67 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMJ96_CH03041 86fa519cfe02b3a9ad5ccdf7fb4b083a 300 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 14 286 3.9E-101 T 12-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 AMJ96_CH03041 86fa519cfe02b3a9ad5ccdf7fb4b083a 300 Pfam PF02219 Methylenetetrahydrofolate reductase 10 287 1.6E-87 T 12-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 AMJ96_CH03041 86fa519cfe02b3a9ad5ccdf7fb4b083a 300 SUPERFAMILY SSF51730 5 288 2.75E-90 T 12-10-2018 IPR029041 FAD-linked oxidoreductase-like AMJ96_CH03041 86fa519cfe02b3a9ad5ccdf7fb4b083a 300 Gene3D G3DSA:3.20.20.220 3 298 1.5E-95 T 12-10-2018 AMJ96_CH04169 b8a2a9118c2e77ea498bf228d6b9c386 152 SUPERFAMILY SSF51182 13 115 6.16E-21 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH04169 b8a2a9118c2e77ea498bf228d6b9c386 152 Pfam PF07883 Cupin domain 36 107 2.2E-15 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_CH04169 b8a2a9118c2e77ea498bf228d6b9c386 152 Gene3D G3DSA:2.60.120.10 5 151 1.7E-24 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH02099 0c96995f61ba2de87472861fd8cf419b 265 Pfam PF02633 Creatinine amidohydrolase 10 250 3.7E-60 T 12-10-2018 IPR003785 Creatininase/formamide hydrolase KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 AMJ96_CH02099 0c96995f61ba2de87472861fd8cf419b 265 Gene3D G3DSA:3.40.50.10310 19 256 1.1E-63 T 12-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 AMJ96_CH02099 0c96995f61ba2de87472861fd8cf419b 265 SUPERFAMILY SSF102215 5 254 2.88E-67 T 12-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 AMJ96_CH03624 85b6249f05d9e4b5e1524f8e85f695cb 178 Gene3D G3DSA:3.30.460.80 2 132 2.8E-45 T 12-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03624 85b6249f05d9e4b5e1524f8e85f695cb 178 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 81 139 2.0E-27 T 12-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03624 85b6249f05d9e4b5e1524f8e85f695cb 178 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 113 134 - T 12-10-2018 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03624 85b6249f05d9e4b5e1524f8e85f695cb 178 SUPERFAMILY SSF143243 11 156 8.5E-53 T 12-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03624 85b6249f05d9e4b5e1524f8e85f695cb 178 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 3 160 31.304 T 12-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03624 85b6249f05d9e4b5e1524f8e85f695cb 178 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 33 153 1.1E-47 T 12-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03624 85b6249f05d9e4b5e1524f8e85f695cb 178 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 33 151 1.5E-47 T 12-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01365 8c0efe109d03751f74af40b4ed794a7c 119 Gene3D G3DSA:3.30.70.1060 1 117 2.7E-32 T 12-10-2018 AMJ96_CH01365 8c0efe109d03751f74af40b4ed794a7c 119 SUPERFAMILY SSF54909 1 114 7.51E-27 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH01365 8c0efe109d03751f74af40b4ed794a7c 119 Pfam PF03795 YCII-related domain 17 112 3.8E-15 T 12-10-2018 IPR005545 YCII-related AMJ96_PC00276 efdec574b1c861600ed574c37734e775 567 PIRSF PIRSF001294 1 563 3.4E-241 T 12-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AMJ96_PC00276 efdec574b1c861600ed574c37734e775 567 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 2 561 36.117 T 12-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AMJ96_PC00276 efdec574b1c861600ed574c37734e775 567 Pfam PF03814 Potassium-transporting ATPase A subunit 11 559 2.2E-245 T 12-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AMJ96_PC00276 efdec574b1c861600ed574c37734e775 567 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 1 560 6.0E-236 T 12-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AMJ96_CH03804 2f4af9f0800559c8806916bc9ba518b9 331 Gene3D G3DSA:3.40.50.10490 8 205 4.2E-58 T 12-10-2018 AMJ96_CH03804 2f4af9f0800559c8806916bc9ba518b9 331 PIRSF PIRSF004692 1 331 2.5E-128 T 12-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 AMJ96_CH03804 2f4af9f0800559c8806916bc9ba518b9 331 SMART SM00116 282 330 0.05 T 12-10-2018 IPR000644 CBS domain AMJ96_CH03804 2f4af9f0800559c8806916bc9ba518b9 331 SMART SM00116 219 267 1.6E-4 T 12-10-2018 IPR000644 CBS domain AMJ96_CH03804 2f4af9f0800559c8806916bc9ba518b9 331 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 55 321 2.3E-92 T 12-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 AMJ96_CH03804 2f4af9f0800559c8806916bc9ba518b9 331 Gene3D G3DSA:3.10.580.10 206 328 2.9E-38 T 12-10-2018 AMJ96_CH03804 2f4af9f0800559c8806916bc9ba518b9 331 Pfam PF00571 CBS domain 275 327 3.0E-9 T 12-10-2018 IPR000644 CBS domain AMJ96_CH03804 2f4af9f0800559c8806916bc9ba518b9 331 Pfam PF00571 CBS domain 210 265 2.0E-6 T 12-10-2018 IPR000644 CBS domain AMJ96_CH03804 2f4af9f0800559c8806916bc9ba518b9 331 SUPERFAMILY SSF53697 14 328 3.34E-62 T 12-10-2018 AMJ96_CH03804 2f4af9f0800559c8806916bc9ba518b9 331 Pfam PF01380 SIS domain 55 182 4.6E-29 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMJ96_CH04305 486840843e6434e12e1a8f13ff17f168 427 Gene3D G3DSA:3.30.9.10 124 345 2.0E-64 T 12-10-2018 AMJ96_CH04305 486840843e6434e12e1a8f13ff17f168 427 SUPERFAMILY SSF51905 30 402 7.77E-45 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH04305 486840843e6434e12e1a8f13ff17f168 427 Pfam PF01266 FAD dependent oxidoreductase 31 382 2.9E-45 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_CH04305 486840843e6434e12e1a8f13ff17f168 427 Gene3D G3DSA:3.50.50.60 31 384 2.0E-64 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00277 0f99c053bb19f5619085109d469bfa41 29 TIGRFAM TIGR02115 potass_kdpF: K+-transporting ATPase, F subunit 7 29 1.5E-10 T 12-10-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 AMJ96_PC00277 0f99c053bb19f5619085109d469bfa41 29 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 6 29 1.1E-10 T 12-10-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 AMJ96_CH01185 f4b6361db8dad1c4456fb1f404f35a10 250 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 12-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AMJ96_CH01185 f4b6361db8dad1c4456fb1f404f35a10 250 SMART SM01134 71 231 1.5E-57 T 12-10-2018 AMJ96_CH01185 f4b6361db8dad1c4456fb1f404f35a10 250 Pfam PF00455 DeoR C terminal sensor domain 74 227 1.1E-39 T 12-10-2018 IPR014036 DeoR C-terminal sensor domain AMJ96_CH01185 f4b6361db8dad1c4456fb1f404f35a10 250 SMART SM00420 6 58 4.3E-11 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMJ96_CH01185 f4b6361db8dad1c4456fb1f404f35a10 250 Pfam PF08220 DeoR-like helix-turn-helix domain 6 57 3.9E-14 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMJ96_CH01185 f4b6361db8dad1c4456fb1f404f35a10 250 SUPERFAMILY SSF46785 4 60 8.1E-11 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01185 f4b6361db8dad1c4456fb1f404f35a10 250 SUPERFAMILY SSF100950 74 229 1.67E-22 T 12-10-2018 IPR037171 NagB/RpiA transferase-like AMJ96_CH01185 f4b6361db8dad1c4456fb1f404f35a10 250 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 2.8E-9 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMJ96_CH01185 f4b6361db8dad1c4456fb1f404f35a10 250 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 2.8E-9 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMJ96_CH00203 b8c5862753aa4f715325069d39cb2b65 322 SUPERFAMILY SSF51556 5 321 4.54E-75 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_CH00203 b8c5862753aa4f715325069d39cb2b65 322 Gene3D G3DSA:3.20.20.140 1 322 1.4E-92 T 12-10-2018 AMJ96_CH00203 b8c5862753aa4f715325069d39cb2b65 322 Hamap MF_01962 Adenine deaminase. 1 311 64.853 T 12-10-2018 IPR028892 Adenine deaminase type 2 GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 AMJ96_CH00203 b8c5862753aa4f715325069d39cb2b65 322 Pfam PF00962 Adenosine/AMP deaminase 5 319 2.4E-59 T 12-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 AMJ96_CH00203 b8c5862753aa4f715325069d39cb2b65 322 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 6 322 8.4E-95 T 12-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 AMJ96_CH02408 730a24b56c52c2dd1b32762129bef252 291 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 107 124 2.4E-12 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMJ96_CH02408 730a24b56c52c2dd1b32762129bef252 291 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 54 65 2.4E-12 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMJ96_CH02408 730a24b56c52c2dd1b32762129bef252 291 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 134 147 2.4E-12 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMJ96_CH02408 730a24b56c52c2dd1b32762129bef252 291 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 29 247 2.2E-66 T 12-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AMJ96_CH02408 730a24b56c52c2dd1b32762129bef252 291 SUPERFAMILY SSF56601 7 261 8.0E-72 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMJ96_CH02408 730a24b56c52c2dd1b32762129bef252 291 Gene3D G3DSA:3.40.710.10 24 264 3.8E-77 T 12-10-2018 AMJ96_PD00233 2b9c719278472707309328839081f1f4 269 SUPERFAMILY SSF56655 14 254 5.76E-64 T 12-10-2018 AMJ96_PD00233 2b9c719278472707309328839081f1f4 269 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 90 103 - T 12-10-2018 IPR020583 Inositol monophosphatase, metal-binding site AMJ96_PD00233 2b9c719278472707309328839081f1f4 269 PRINTS PR00377 Inositol monophosphatase superfamily signature 215 239 4.0E-33 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_PD00233 2b9c719278472707309328839081f1f4 269 PRINTS PR00377 Inositol monophosphatase superfamily signature 139 162 4.0E-33 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_PD00233 2b9c719278472707309328839081f1f4 269 PRINTS PR00377 Inositol monophosphatase superfamily signature 49 69 4.0E-33 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_PD00233 2b9c719278472707309328839081f1f4 269 PRINTS PR00377 Inositol monophosphatase superfamily signature 71 87 4.0E-33 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_PD00233 2b9c719278472707309328839081f1f4 269 PRINTS PR00377 Inositol monophosphatase superfamily signature 184 205 4.0E-33 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_PD00233 2b9c719278472707309328839081f1f4 269 PRINTS PR00377 Inositol monophosphatase superfamily signature 90 106 4.0E-33 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_PD00233 2b9c719278472707309328839081f1f4 269 Gene3D G3DSA:3.30.540.10 7 147 5.2E-41 T 12-10-2018 AMJ96_PD00233 2b9c719278472707309328839081f1f4 269 Pfam PF00459 Inositol monophosphatase family 17 251 2.0E-50 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_PD00233 2b9c719278472707309328839081f1f4 269 Gene3D G3DSA:3.40.190.80 152 267 2.6E-21 T 12-10-2018 AMJ96_CH03667 e7d179b65159db4270b0e33cf2eb8aac 444 Pfam PF02954 Bacterial regulatory protein, Fis family 393 433 9.9E-8 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMJ96_CH03667 e7d179b65159db4270b0e33cf2eb8aac 444 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 358 367 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AMJ96_CH03667 e7d179b65159db4270b0e33cf2eb8aac 444 SMART SM00382 165 308 4.2E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03667 e7d179b65159db4270b0e33cf2eb8aac 444 Gene3D G3DSA:3.40.50.300 135 315 2.0E-56 T 12-10-2018 AMJ96_CH03667 e7d179b65159db4270b0e33cf2eb8aac 444 Gene3D G3DSA:3.40.50.2300 1 134 4.0E-39 T 12-10-2018 AMJ96_CH03667 e7d179b65159db4270b0e33cf2eb8aac 444 Gene3D G3DSA:1.10.8.60 316 387 2.0E-13 T 12-10-2018 AMJ96_CH03667 e7d179b65159db4270b0e33cf2eb8aac 444 SMART SM00448 4 115 1.3E-35 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03667 e7d179b65159db4270b0e33cf2eb8aac 444 SUPERFAMILY SSF52172 1 189 8.68E-45 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH03667 e7d179b65159db4270b0e33cf2eb8aac 444 SUPERFAMILY SSF46689 385 436 9.86E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03667 e7d179b65159db4270b0e33cf2eb8aac 444 Gene3D G3DSA:1.10.10.60 388 438 1.3E-11 T 12-10-2018 AMJ96_CH03667 e7d179b65159db4270b0e33cf2eb8aac 444 Pfam PF00158 Sigma-54 interaction domain 147 311 3.1E-59 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMJ96_CH03667 e7d179b65159db4270b0e33cf2eb8aac 444 Pfam PF00072 Response regulator receiver domain 6 113 1.1E-29 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03667 e7d179b65159db4270b0e33cf2eb8aac 444 SUPERFAMILY SSF52540 147 374 1.2E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02149 af020a383943186fb0aa0ee519ec90f9 453 Pfam PF12804 MobA-like NTP transferase domain 7 147 7.2E-20 T 12-10-2018 IPR025877 MobA-like NTP transferase AMJ96_CH02149 af020a383943186fb0aa0ee519ec90f9 453 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 267 302 9.0E-8 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH02149 af020a383943186fb0aa0ee519ec90f9 453 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 380 414 4.4E-10 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH02149 af020a383943186fb0aa0ee519ec90f9 453 SUPERFAMILY SSF51161 251 431 8.64E-50 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily AMJ96_CH02149 af020a383943186fb0aa0ee519ec90f9 453 SUPERFAMILY SSF53448 6 254 1.55E-54 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH02149 af020a383943186fb0aa0ee519ec90f9 453 Gene3D G3DSA:2.160.10.10 230 440 2.0E-59 T 12-10-2018 AMJ96_CH02149 af020a383943186fb0aa0ee519ec90f9 453 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 7 434 3.0E-141 T 12-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 AMJ96_CH02149 af020a383943186fb0aa0ee519ec90f9 453 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 388 416 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMJ96_CH02149 af020a383943186fb0aa0ee519ec90f9 453 Gene3D G3DSA:3.90.550.10 2 229 1.4E-53 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH02149 af020a383943186fb0aa0ee519ec90f9 453 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 4 437 36.729 T 12-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 AMJ96_CH01588 7fe3938783c30882b05cfe968da65967 297 Gene3D G3DSA:1.10.3720.10 50 293 1.2E-64 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01588 7fe3938783c30882b05cfe968da65967 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 283 7.9E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH01588 7fe3938783c30882b05cfe968da65967 297 SUPERFAMILY SSF161098 54 281 2.62E-56 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02974 4d3446d2743bda387fc513bada97bc5c 364 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 197 353 5.6E-41 T 12-10-2018 IPR017516 AbrB duplication AMJ96_CH02974 4d3446d2743bda387fc513bada97bc5c 364 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 18 175 8.8E-36 T 12-10-2018 IPR017516 AbrB duplication AMJ96_CH02974 4d3446d2743bda387fc513bada97bc5c 364 PIRSF PIRSF038991 6 361 6.7E-72 T 12-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 AMJ96_CH02974 4d3446d2743bda387fc513bada97bc5c 364 Pfam PF05145 Transition state regulatory protein AbrB 41 353 4.3E-92 T 12-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 AMJ96_PB00002 8f40f3ffb9809525481b8132f038c2f4 319 Gene3D G3DSA:3.90.350.10 1 152 8.3E-34 T 12-10-2018 IPR014736 Transposase, Tn5-like, core AMJ96_PB00002 8f40f3ffb9809525481b8132f038c2f4 319 Pfam PF01609 Transposase DDE domain 55 151 5.0E-7 T 12-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMJ96_PB00002 8f40f3ffb9809525481b8132f038c2f4 319 SUPERFAMILY SSF53098 3 263 9.1E-52 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_CH03137 0bc4ff878afe1cc77314f26cc858d59c 448 Pfam PF00072 Response regulator receiver domain 7 116 2.1E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03137 0bc4ff878afe1cc77314f26cc858d59c 448 Gene3D G3DSA:3.40.50.2300 3 130 5.0E-36 T 12-10-2018 AMJ96_CH03137 0bc4ff878afe1cc77314f26cc858d59c 448 Gene3D G3DSA:1.10.8.60 316 380 7.5E-20 T 12-10-2018 AMJ96_CH03137 0bc4ff878afe1cc77314f26cc858d59c 448 SUPERFAMILY SSF52172 6 190 1.04E-37 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH03137 0bc4ff878afe1cc77314f26cc858d59c 448 SMART SM00448 5 116 1.8E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03137 0bc4ff878afe1cc77314f26cc858d59c 448 Gene3D G3DSA:1.10.10.60 383 441 4.2E-12 T 12-10-2018 AMJ96_CH03137 0bc4ff878afe1cc77314f26cc858d59c 448 SMART SM00382 165 308 6.3E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03137 0bc4ff878afe1cc77314f26cc858d59c 448 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 358 367 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site AMJ96_CH03137 0bc4ff878afe1cc77314f26cc858d59c 448 Pfam PF02954 Bacterial regulatory protein, Fis family 397 437 5.7E-6 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AMJ96_CH03137 0bc4ff878afe1cc77314f26cc858d59c 448 SUPERFAMILY SSF52540 145 374 1.35E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03137 0bc4ff878afe1cc77314f26cc858d59c 448 Pfam PF00158 Sigma-54 interaction domain 145 311 6.5E-64 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AMJ96_CH03137 0bc4ff878afe1cc77314f26cc858d59c 448 Gene3D G3DSA:3.40.50.300 131 315 5.0E-56 T 12-10-2018 AMJ96_CH03137 0bc4ff878afe1cc77314f26cc858d59c 448 SUPERFAMILY SSF46689 384 440 4.48E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03137 0bc4ff878afe1cc77314f26cc858d59c 448 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 169 182 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMJ96_CH00202 f4a32370a628259f86ce513fc3bb923a 209 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 4 209 4.2E-82 T 12-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 AMJ96_CH00202 f4a32370a628259f86ce513fc3bb923a 209 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 3 209 45.181 T 12-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 AMJ96_CH00202 f4a32370a628259f86ce513fc3bb923a 209 SUPERFAMILY SSF53271 4 207 2.36E-67 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like AMJ96_CH00202 f4a32370a628259f86ce513fc3bb923a 209 Pfam PF14681 Uracil phosphoribosyltransferase 6 208 7.6E-71 T 12-10-2018 AMJ96_CH00202 f4a32370a628259f86ce513fc3bb923a 209 Gene3D G3DSA:3.40.50.2020 3 209 1.7E-76 T 12-10-2018 AMJ96_PB00275 452d3739598e4a77a11760467992accc 73 SUPERFAMILY SSF103473 7 71 3.66E-8 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_PB00275 452d3739598e4a77a11760467992accc 73 Gene3D G3DSA:1.20.1250.20 1 72 1.6E-8 T 12-10-2018 AMJ96_CH00516 462bc8b342c9559c260a33aa324e532c 649 Gene3D G3DSA:3.40.50.300 417 625 9.3E-44 T 12-10-2018 AMJ96_CH00516 462bc8b342c9559c260a33aa324e532c 649 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 452 465 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AMJ96_CH00516 462bc8b342c9559c260a33aa324e532c 649 ProSitePatterns PS00211 ABC transporters family signature. 546 560 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00516 462bc8b342c9559c260a33aa324e532c 649 Pfam PF06472 ABC transporter transmembrane region 2 83 346 2.4E-42 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_CH00516 462bc8b342c9559c260a33aa324e532c 649 Pfam PF00005 ABC transporter 440 574 1.6E-21 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00516 462bc8b342c9559c260a33aa324e532c 649 SMART SM00382 448 637 8.7E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00516 462bc8b342c9559c260a33aa324e532c 649 SUPERFAMILY SSF90123 60 390 1.44E-23 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH00516 462bc8b342c9559c260a33aa324e532c 649 SUPERFAMILY SSF52540 419 617 1.51E-38 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00516 462bc8b342c9559c260a33aa324e532c 649 Gene3D G3DSA:1.20.1560.10 77 396 8.3E-6 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH03918 9cc6861fe9eab4e4f910934b4dd63234 57 PIRSF PIRSF036466 1 55 1.3E-19 T 12-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 AMJ96_CH03918 9cc6861fe9eab4e4f910934b4dd63234 57 Pfam PF07043 Protein of unknown function (DUF1328) 6 44 3.0E-13 T 12-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 AMJ96_CH03918 9cc6861fe9eab4e4f910934b4dd63234 57 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 56 18.907 T 12-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 AMJ96_CH01522 1b890c68d6fef452ef84cde095426a46 196 PIRSF PIRSF000847 3 196 5.8E-46 T 12-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AMJ96_CH01522 1b890c68d6fef452ef84cde095426a46 196 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 57 79 - T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMJ96_CH01522 1b890c68d6fef452ef84cde095426a46 196 Gene3D G3DSA:1.20.120.1760 1 189 7.1E-14 T 12-10-2018 AMJ96_CH01522 1b890c68d6fef452ef84cde095426a46 196 Pfam PF01066 CDP-alcohol phosphatidyltransferase 8 79 8.2E-17 T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMJ96_CH01522 1b890c68d6fef452ef84cde095426a46 196 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 7 191 6.4E-47 T 12-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AMJ96_CH04147 2b75f501dd7b9b7b1323202163ec52cf 131 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 5 121 1.4E-28 T 12-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH04147 2b75f501dd7b9b7b1323202163ec52cf 131 Gene3D G3DSA:1.20.1300.10 1 126 1.1E-42 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH04147 2b75f501dd7b9b7b1323202163ec52cf 131 SUPERFAMILY SSF81343 3 124 8.11E-33 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH04147 2b75f501dd7b9b7b1323202163ec52cf 131 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 8 32 - T 12-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH04147 2b75f501dd7b9b7b1323202163ec52cf 131 PIRSF PIRSF000178 1 127 6.1E-40 T 12-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH04147 2b75f501dd7b9b7b1323202163ec52cf 131 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 6 124 9.6E-40 T 12-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH02330 9fd25e102c2f45ec55dd78150e23919f 360 Gene3D G3DSA:3.40.50.2300 137 262 1.9E-41 T 12-10-2018 AMJ96_CH02330 9fd25e102c2f45ec55dd78150e23919f 360 Pfam PF13458 Periplasmic binding protein 25 349 3.6E-27 T 12-10-2018 IPR028081 Leucine-binding protein domain AMJ96_CH02330 9fd25e102c2f45ec55dd78150e23919f 360 Gene3D G3DSA:3.40.50.2300 27 332 1.9E-41 T 12-10-2018 AMJ96_CH02330 9fd25e102c2f45ec55dd78150e23919f 360 SUPERFAMILY SSF53822 25 352 1.27E-44 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH04100 658d08a35ca4f1de7ac969606c3144ee 158 Pfam PF01584 CheW-like domain 16 150 1.9E-31 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMJ96_CH04100 658d08a35ca4f1de7ac969606c3144ee 158 SUPERFAMILY SSF50341 9 151 2.62E-35 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMJ96_CH04100 658d08a35ca4f1de7ac969606c3144ee 158 Gene3D G3DSA:2.40.50.180 34 143 9.6E-37 T 12-10-2018 AMJ96_CH04100 658d08a35ca4f1de7ac969606c3144ee 158 Gene3D G3DSA:2.30.30.40 18 142 9.6E-37 T 12-10-2018 AMJ96_CH04100 658d08a35ca4f1de7ac969606c3144ee 158 SMART SM00260 11 148 7.5E-29 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMJ96_CH00001 a561d284fd5942c5e3ea786572c4d652 273 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 8 271 55.021 T 12-10-2018 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein AMJ96_CH00001 a561d284fd5942c5e3ea786572c4d652 273 Pfam PF03618 Kinase/pyrophosphorylase 10 265 5.2E-87 T 12-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 AMJ96_PA00229 520b7d3b73c5268194feaffcbf5bcabb 261 Gene3D G3DSA:1.10.10.10 9 84 1.3E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PA00229 520b7d3b73c5268194feaffcbf5bcabb 261 SUPERFAMILY SSF55781 78 253 3.07E-35 T 12-10-2018 AMJ96_PA00229 520b7d3b73c5268194feaffcbf5bcabb 261 SUPERFAMILY SSF46785 15 86 2.19E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PA00229 520b7d3b73c5268194feaffcbf5bcabb 261 Pfam PF01614 Bacterial transcriptional regulator 132 252 1.4E-6 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal AMJ96_PA00229 520b7d3b73c5268194feaffcbf5bcabb 261 Gene3D G3DSA:3.30.450.40 85 256 1.4E-26 T 12-10-2018 IPR029016 GAF-like domain superfamily AMJ96_PA00229 520b7d3b73c5268194feaffcbf5bcabb 261 Pfam PF09339 IclR helix-turn-helix domain 16 64 2.6E-12 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMJ96_PA00229 520b7d3b73c5268194feaffcbf5bcabb 261 SMART SM00346 13 103 3.6E-5 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMJ96_PB00012 cd694e926bc38009bf37e708855c1a2a 143 SUPERFAMILY SSF52206 48 141 1.15E-17 T 12-10-2018 IPR036490 Hypothetical protein MTH538 superfamily AMJ96_PB00012 cd694e926bc38009bf37e708855c1a2a 143 Pfam PF08937 MTH538 TIR-like domain (DUF1863) 3 116 1.1E-13 T 12-10-2018 IPR015032 MTH538 TIR-like domain AMJ96_PB00012 cd694e926bc38009bf37e708855c1a2a 143 Gene3D G3DSA:3.40.50.9200 51 143 1.3E-16 T 12-10-2018 IPR036490 Hypothetical protein MTH538 superfamily AMJ96_CH03968 b4c43d8d75f138e9ac02086dd18ac398 118 SUPERFAMILY SSF55620 1 117 2.61E-35 T 12-10-2018 AMJ96_CH03968 b4c43d8d75f138e9ac02086dd18ac398 118 PIRSF PIRSF006113 1 118 6.7E-24 T 12-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 AMJ96_CH03968 b4c43d8d75f138e9ac02086dd18ac398 118 Gene3D G3DSA:3.30.479.10 1 118 3.3E-36 T 12-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 AMJ96_CH03968 b4c43d8d75f138e9ac02086dd18ac398 118 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 3 117 1.4E-31 T 12-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 AMJ96_CH03968 b4c43d8d75f138e9ac02086dd18ac398 118 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 3 96 7.4E-28 T 12-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 AMJ96_CH00450 e45e826debe5e6624d0446f65b30177d 196 Pfam PF02469 Fasciclin domain 60 194 1.6E-29 T 12-10-2018 IPR000782 FAS1 domain AMJ96_CH00450 e45e826debe5e6624d0446f65b30177d 196 Gene3D G3DSA:2.30.180.10 23 195 1.1E-40 T 12-10-2018 IPR036378 FAS1 domain superfamily AMJ96_CH00450 e45e826debe5e6624d0446f65b30177d 196 SUPERFAMILY SSF82153 49 194 1.01E-35 T 12-10-2018 IPR036378 FAS1 domain superfamily AMJ96_CH00450 e45e826debe5e6624d0446f65b30177d 196 SMART SM00554 84 195 7.3E-18 T 12-10-2018 IPR000782 FAS1 domain AMJ96_CH03429 8ec534be626564a6357facdfebf0048e 435 Pfam PF13533 Biotin-lipoyl like 57 103 4.8E-9 T 12-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMJ96_CH03429 8ec534be626564a6357facdfebf0048e 435 Gene3D G3DSA:2.40.30.170 324 412 1.9E-15 T 12-10-2018 AMJ96_CH03429 8ec534be626564a6357facdfebf0048e 435 Gene3D G3DSA:1.10.287.470 214 286 1.9E-15 T 12-10-2018 AMJ96_CH03429 8ec534be626564a6357facdfebf0048e 435 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 24 47 4.4E-55 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH03429 8ec534be626564a6357facdfebf0048e 435 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 399 414 4.4E-55 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH03429 8ec534be626564a6357facdfebf0048e 435 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 356 379 4.4E-55 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH03429 8ec534be626564a6357facdfebf0048e 435 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 66 86 4.4E-55 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH03429 8ec534be626564a6357facdfebf0048e 435 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 414 434 4.4E-55 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH03429 8ec534be626564a6357facdfebf0048e 435 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 299 320 4.4E-55 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH03429 8ec534be626564a6357facdfebf0048e 435 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 332 356 4.4E-55 T 12-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AMJ96_CH03429 8ec534be626564a6357facdfebf0048e 435 Gene3D G3DSA:2.40.50.100 287 323 1.9E-15 T 12-10-2018 AMJ96_CH03429 8ec534be626564a6357facdfebf0048e 435 Pfam PF13437 HlyD family secretion protein 287 395 1.3E-18 T 12-10-2018 AMJ96_CH03429 8ec534be626564a6357facdfebf0048e 435 Gene3D G3DSA:2.40.50.100 57 119 4.2E-7 T 12-10-2018 AMJ96_CH03429 8ec534be626564a6357facdfebf0048e 435 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 15 435 5.2E-119 T 12-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 AMJ96_PD00074 3aaf46bc8e50f1dc13e936de9dc0f413 190 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 44 173 1.4E-27 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ AMJ96_CH03966 640f976f24cdc2d020a3e09181d10e87 350 SUPERFAMILY SSF53822 78 345 4.93E-31 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH03966 640f976f24cdc2d020a3e09181d10e87 350 Pfam PF13377 Periplasmic binding protein-like domain 191 344 1.3E-11 T 12-10-2018 AMJ96_CH03966 640f976f24cdc2d020a3e09181d10e87 350 SMART SM00354 21 91 3.1E-17 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03966 640f976f24cdc2d020a3e09181d10e87 350 Gene3D G3DSA:1.10.260.40 14 79 2.4E-18 T 12-10-2018 AMJ96_CH03966 640f976f24cdc2d020a3e09181d10e87 350 Pfam PF00356 Bacterial regulatory proteins, lacI family 23 68 3.0E-12 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03966 640f976f24cdc2d020a3e09181d10e87 350 Gene3D G3DSA:3.40.50.2300 96 331 7.9E-57 T 12-10-2018 AMJ96_CH03966 640f976f24cdc2d020a3e09181d10e87 350 Gene3D G3DSA:3.40.50.2300 182 311 7.9E-57 T 12-10-2018 AMJ96_CH03966 640f976f24cdc2d020a3e09181d10e87 350 SUPERFAMILY SSF47413 21 80 4.02E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH02399 bb5b8cb4aea7895b95f46660b2744efd 121 SMART SM00905 6 119 8.4E-41 T 12-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMJ96_CH02399 bb5b8cb4aea7895b95f46660b2744efd 121 TIGRFAM TIGR00526 folB_dom: FolB domain 5 118 2.5E-20 T 12-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMJ96_CH02399 bb5b8cb4aea7895b95f46660b2744efd 121 Gene3D G3DSA:3.30.1130.10 3 120 3.7E-35 T 12-10-2018 AMJ96_CH02399 bb5b8cb4aea7895b95f46660b2744efd 121 Pfam PF02152 Dihydroneopterin aldolase 6 117 4.5E-27 T 12-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMJ96_CH02399 bb5b8cb4aea7895b95f46660b2744efd 121 SUPERFAMILY SSF55620 4 118 1.65E-33 T 12-10-2018 AMJ96_CH02399 bb5b8cb4aea7895b95f46660b2744efd 121 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 4 118 2.4E-38 T 12-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AMJ96_PC00060 0d9775741e8ecb0d7bfd47d669b68402 571 SUPERFAMILY SSF81343 15 207 6.28E-16 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_PC00060 0d9775741e8ecb0d7bfd47d669b68402 571 SMART SM00044 344 542 7.6E-14 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_PC00060 0d9775741e8ecb0d7bfd47d669b68402 571 SUPERFAMILY SSF55073 373 560 1.4E-50 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_PC00060 0d9775741e8ecb0d7bfd47d669b68402 571 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 376 556 3.1E-29 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_PC00060 0d9775741e8ecb0d7bfd47d669b68402 571 SUPERFAMILY SSF54292 267 358 8.41E-21 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMJ96_PC00060 0d9775741e8ecb0d7bfd47d669b68402 571 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 275 346 4.3E-8 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AMJ96_PC00060 0d9775741e8ecb0d7bfd47d669b68402 571 Gene3D G3DSA:3.30.70.1230 367 567 2.3E-51 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_PC00060 0d9775741e8ecb0d7bfd47d669b68402 571 Gene3D G3DSA:3.10.20.30 263 362 2.1E-18 T 12-10-2018 IPR012675 Beta-grasp domain superfamily AMJ96_CH02185 4fd928c4efecd231a974025fc8625efa 743 SUPERFAMILY SSF161098 457 720 1.12E-43 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02185 4fd928c4efecd231a974025fc8625efa 743 SUPERFAMILY SSF161098 164 433 3.27E-46 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02185 4fd928c4efecd231a974025fc8625efa 743 Gene3D G3DSA:1.10.3720.10 158 440 3.2E-62 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02185 4fd928c4efecd231a974025fc8625efa 743 Gene3D G3DSA:1.10.3720.10 457 724 3.1E-44 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02185 4fd928c4efecd231a974025fc8625efa 743 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 242 429 4.2E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02185 4fd928c4efecd231a974025fc8625efa 743 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 538 708 2.7E-12 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00164 4af94398e291bda8fa503df7636827f0 447 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 236 442 1.1E-73 T 12-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 AMJ96_CH00164 4af94398e291bda8fa503df7636827f0 447 SUPERFAMILY SSF161098 244 430 6.15E-32 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00164 4af94398e291bda8fa503df7636827f0 447 Gene3D G3DSA:1.10.3720.10 244 442 4.0E-30 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00164 4af94398e291bda8fa503df7636827f0 447 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 269 437 6.0E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03283 8ab219c991c6ddce6046f28163f88e65 412 SUPERFAMILY SSF46626 287 404 1.32E-8 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_CH03283 8ab219c991c6ddce6046f28163f88e65 412 Pfam PF06181 Urate oxidase N-terminal 6 298 1.1E-130 T 12-10-2018 IPR010389 Urate oxidase N-terminal AMJ96_CH03479 0ece6d2bf7b37d282209bf4b038c78b9 559 Pfam PF16657 Maltogenic Amylase, C-terminal domain 482 553 1.4E-7 T 12-10-2018 IPR032091 Maltogenic Amylase, C-terminal AMJ96_CH03479 0ece6d2bf7b37d282209bf4b038c78b9 559 SUPERFAMILY SSF51011 482 556 3.36E-14 T 12-10-2018 AMJ96_CH03479 0ece6d2bf7b37d282209bf4b038c78b9 559 Gene3D G3DSA:3.20.20.80 20 474 1.6E-196 T 12-10-2018 AMJ96_CH03479 0ece6d2bf7b37d282209bf4b038c78b9 559 SMART SM00642 28 421 1.4E-152 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_CH03479 0ece6d2bf7b37d282209bf4b038c78b9 559 Gene3D G3DSA:3.90.400.10 120 190 1.6E-196 T 12-10-2018 AMJ96_CH03479 0ece6d2bf7b37d282209bf4b038c78b9 559 Pfam PF00128 Alpha amylase, catalytic domain 43 378 3.5E-117 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_CH03479 0ece6d2bf7b37d282209bf4b038c78b9 559 Gene3D G3DSA:2.60.40.1180 483 559 1.5E-15 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta AMJ96_CH03479 0ece6d2bf7b37d282209bf4b038c78b9 559 SUPERFAMILY SSF51445 18 479 6.28E-152 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH00304 b1ee3164e9c03fa07181c41150bd784f 283 Pfam PF12833 Helix-turn-helix domain 186 261 1.6E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH00304 b1ee3164e9c03fa07181c41150bd784f 283 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 215 257 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_CH00304 b1ee3164e9c03fa07181c41150bd784f 283 SUPERFAMILY SSF46689 215 262 1.79E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH00304 b1ee3164e9c03fa07181c41150bd784f 283 SMART SM00342 179 261 1.8E-28 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH00304 b1ee3164e9c03fa07181c41150bd784f 283 Gene3D G3DSA:1.10.10.60 159 268 1.1E-25 T 12-10-2018 AMJ96_CH00304 b1ee3164e9c03fa07181c41150bd784f 283 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 230 245 1.3E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_CH00304 b1ee3164e9c03fa07181c41150bd784f 283 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 245 261 1.3E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_CH03373 9d190b49349c5be7d1760ccfc4f93e91 532 Pfam PF05977 Transmembrane secretion effector 9 529 1.9E-222 T 12-10-2018 IPR010290 Transmembrane secretion effector AMJ96_CH03373 9d190b49349c5be7d1760ccfc4f93e91 532 Gene3D G3DSA:1.20.1250.20 12 402 5.0E-39 T 12-10-2018 AMJ96_CH03373 9d190b49349c5be7d1760ccfc4f93e91 532 SUPERFAMILY SSF103473 18 401 1.96E-47 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH02892 011dfb9f8f28b0ed42f3dc9e5aa6152f 352 SUPERFAMILY SSF51430 1 321 6.42E-97 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH02892 011dfb9f8f28b0ed42f3dc9e5aa6152f 352 PRINTS PR00069 Aldo-keto reductase signature 143 160 4.5E-6 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH02892 011dfb9f8f28b0ed42f3dc9e5aa6152f 352 PRINTS PR00069 Aldo-keto reductase signature 47 71 4.5E-6 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH02892 011dfb9f8f28b0ed42f3dc9e5aa6152f 352 PRINTS PR00069 Aldo-keto reductase signature 112 130 4.5E-6 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH02892 011dfb9f8f28b0ed42f3dc9e5aa6152f 352 Pfam PF00248 Aldo/keto reductase family 16 318 1.2E-70 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_CH02892 011dfb9f8f28b0ed42f3dc9e5aa6152f 352 Gene3D G3DSA:3.20.20.100 1 340 1.7E-120 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH01209 a2d42ca9dcfb92530567873c57cb9023 268 Pfam PF03734 L,D-transpeptidase catalytic domain 130 267 6.8E-16 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMJ96_CH01209 a2d42ca9dcfb92530567873c57cb9023 268 Gene3D G3DSA:2.40.440.10 102 268 2.5E-35 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH01209 a2d42ca9dcfb92530567873c57cb9023 268 SUPERFAMILY SSF141523 123 267 1.31E-29 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH01813 533552cbce396e6ffaa2f16b2255eaa1 422 SMART SM00267 246 415 8.4E-49 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01813 533552cbce396e6ffaa2f16b2255eaa1 422 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 255 413 1.3E-42 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01813 533552cbce396e6ffaa2f16b2255eaa1 422 Pfam PF00990 Diguanylate cyclase, GGDEF domain 258 410 1.5E-35 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01813 533552cbce396e6ffaa2f16b2255eaa1 422 SUPERFAMILY SSF55073 261 413 7.69E-42 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH01813 533552cbce396e6ffaa2f16b2255eaa1 422 Gene3D G3DSA:3.30.70.270 250 416 2.4E-46 T 12-10-2018 AMJ96_CH04233 12d5dc43377b884f64052d599a137e6b 525 Gene3D G3DSA:3.40.720.10 22 524 4.0E-199 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 AMJ96_CH04233 12d5dc43377b884f64052d599a137e6b 525 Pfam PF00884 Sulfatase 23 393 2.2E-57 T 12-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 AMJ96_CH04233 12d5dc43377b884f64052d599a137e6b 525 SUPERFAMILY SSF53649 22 503 5.71E-109 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 AMJ96_CH04233 12d5dc43377b884f64052d599a137e6b 525 Pfam PF16347 Domain of unknown function (DUF4976) 398 503 2.0E-9 T 12-10-2018 IPR032506 Domain of unknown function DUF4976 Reactome: R-HSA-2024096|Reactome: R-HSA-2206307 AMJ96_CH04142 60782b42303f5a06e2aea0b6f16a76bb 387 SUPERFAMILY SSF52540 67 216 7.57E-15 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04142 60782b42303f5a06e2aea0b6f16a76bb 387 Gene3D G3DSA:3.40.50.300 26 195 1.5E-19 T 12-10-2018 AMJ96_CH04142 60782b42303f5a06e2aea0b6f16a76bb 387 Pfam PF03969 AFG1-like ATPase 21 378 2.0E-127 T 12-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 AMJ96_CH01205 19afc24c113c0b083a3213323599af57 268 Gene3D G3DSA:3.40.50.1820 24 266 1.8E-58 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01205 19afc24c113c0b083a3213323599af57 268 SUPERFAMILY SSF53474 14 265 9.89E-60 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01205 19afc24c113c0b083a3213323599af57 268 Pfam PF12697 Alpha/beta hydrolase family 47 259 5.4E-19 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH00103 d0fbf5285af854f32a6b13f3913e2d9f 78 Pfam PF11391 Protein of unknown function (DUF2798) 17 75 6.1E-16 T 12-10-2018 IPR021529 Protein of unknown function DUF2798 AMJ96_PD00258 6fd36f18d5a3793bf04cdf1d1b84a54b 364 Gene3D G3DSA:3.30.360.10 130 338 1.4E-68 T 12-10-2018 AMJ96_PD00258 6fd36f18d5a3793bf04cdf1d1b84a54b 364 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 114 3.8E-19 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_PD00258 6fd36f18d5a3793bf04cdf1d1b84a54b 364 SUPERFAMILY SSF55347 133 251 9.48E-22 T 12-10-2018 AMJ96_PD00258 6fd36f18d5a3793bf04cdf1d1b84a54b 364 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 138 236 6.6E-6 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AMJ96_PD00258 6fd36f18d5a3793bf04cdf1d1b84a54b 364 SUPERFAMILY SSF51735 3 159 1.1E-35 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00258 6fd36f18d5a3793bf04cdf1d1b84a54b 364 Gene3D G3DSA:3.40.50.720 8 315 1.4E-68 T 12-10-2018 AMJ96_PC00260 888bc3ebdbb02fd8f92f5c33e39c1d47 272 SUPERFAMILY SSF100939 4 267 3.73E-49 T 12-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily AMJ96_PC00260 888bc3ebdbb02fd8f92f5c33e39c1d47 272 TIGRFAM TIGR02772 Ku_bact: Ku protein 4 266 4.5E-94 T 12-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMJ96_PC00260 888bc3ebdbb02fd8f92f5c33e39c1d47 272 Pfam PF02735 Ku70/Ku80 beta-barrel domain 14 178 2.4E-31 T 12-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 AMJ96_PC00260 888bc3ebdbb02fd8f92f5c33e39c1d47 272 Gene3D G3DSA:2.40.290.10 5 180 4.4E-18 T 12-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily AMJ96_PC00260 888bc3ebdbb02fd8f92f5c33e39c1d47 272 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 3 264 29.438 T 12-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMJ96_PC00260 888bc3ebdbb02fd8f92f5c33e39c1d47 272 PIRSF PIRSF006493 1 272 4.7E-99 T 12-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMJ96_PC00260 888bc3ebdbb02fd8f92f5c33e39c1d47 272 SMART SM00559 55 185 7.6E-18 T 12-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 AMJ96_PD00583 0f968fd352dcc3768ce204d0b3a8f6e7 354 Pfam PF00487 Fatty acid desaturase 60 308 6.0E-33 T 12-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 AMJ96_CH04076 4c6393bc65a56f9d5f1ea3ea5ebee53a 389 SUPERFAMILY SSF90002 268 364 8.24E-21 T 12-10-2018 AMJ96_CH04076 4c6393bc65a56f9d5f1ea3ea5ebee53a 389 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 9 188 1.5E-47 T 12-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH04076 4c6393bc65a56f9d5f1ea3ea5ebee53a 389 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 268 364 2.3E-19 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AMJ96_CH04076 4c6393bc65a56f9d5f1ea3ea5ebee53a 389 Gene3D G3DSA:3.40.50.300 5 206 1.2E-61 T 12-10-2018 AMJ96_CH04076 4c6393bc65a56f9d5f1ea3ea5ebee53a 389 SMART SM00833 268 364 4.7E-30 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AMJ96_CH04076 4c6393bc65a56f9d5f1ea3ea5ebee53a 389 SUPERFAMILY SSF52540 7 192 1.85E-34 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04076 4c6393bc65a56f9d5f1ea3ea5ebee53a 389 Gene3D G3DSA:3.30.1220.10 249 363 2.0E-20 T 12-10-2018 IPR036627 CobW-like, C-terminal domain superfamily AMJ96_PC00407 4d1aa04d31c7cd1729467c30f13cbd58 302 Pfam PF00700 Bacterial flagellin C-terminal helical region 216 300 1.6E-18 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMJ96_PC00407 4d1aa04d31c7cd1729467c30f13cbd58 302 Gene3D G3DSA:1.10.8.410 250 301 2.9E-5 T 12-10-2018 AMJ96_PC00407 4d1aa04d31c7cd1729467c30f13cbd58 302 PRINTS PR00207 Flagellin signature 107 130 1.0E-7 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AMJ96_PC00407 4d1aa04d31c7cd1729467c30f13cbd58 302 PRINTS PR00207 Flagellin signature 75 94 1.0E-7 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AMJ96_PC00407 4d1aa04d31c7cd1729467c30f13cbd58 302 PRINTS PR00207 Flagellin signature 36 53 1.0E-7 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AMJ96_PC00407 4d1aa04d31c7cd1729467c30f13cbd58 302 Gene3D G3DSA:1.20.1330.10 54 242 2.3E-14 T 12-10-2018 AMJ96_PC00407 4d1aa04d31c7cd1729467c30f13cbd58 302 SUPERFAMILY SSF64518 1 301 1.44E-67 T 12-10-2018 AMJ96_PC00407 4d1aa04d31c7cd1729467c30f13cbd58 302 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 137 2.6E-32 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMJ96_CH00416 cdc98b3a53ce6830f4d667fcfae0c850 144 Pfam PF00583 Acetyltransferase (GNAT) family 28 123 9.9E-14 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH00416 cdc98b3a53ce6830f4d667fcfae0c850 144 Gene3D G3DSA:3.40.630.30 1 138 3.5E-24 T 12-10-2018 AMJ96_CH00416 cdc98b3a53ce6830f4d667fcfae0c850 144 SUPERFAMILY SSF55729 1 128 1.01E-25 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_PC00303 b269737eaad49accde9fc6d83f0e9f13 698 TIGRFAM TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase 24 698 0.0 T 12-10-2018 IPR013454 Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase AMJ96_PC00303 b269737eaad49accde9fc6d83f0e9f13 698 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 514 525 8.7E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00303 b269737eaad49accde9fc6d83f0e9f13 698 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 568 576 8.7E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00303 b269737eaad49accde9fc6d83f0e9f13 698 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 588 607 8.7E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00303 b269737eaad49accde9fc6d83f0e9f13 698 SMART SM01007 25 227 2.6E-34 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal AMJ96_PC00303 b269737eaad49accde9fc6d83f0e9f13 698 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 27 220 5.3E-20 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal AMJ96_PC00303 b269737eaad49accde9fc6d83f0e9f13 698 Gene3D G3DSA:3.40.50.720 417 696 1.1E-67 T 12-10-2018 AMJ96_PC00303 b269737eaad49accde9fc6d83f0e9f13 698 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 444 691 1.6E-49 T 12-10-2018 AMJ96_PC00303 b269737eaad49accde9fc6d83f0e9f13 698 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 588 607 4.5E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00303 b269737eaad49accde9fc6d83f0e9f13 698 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 514 525 4.5E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00303 b269737eaad49accde9fc6d83f0e9f13 698 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 609 626 4.5E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00303 b269737eaad49accde9fc6d83f0e9f13 698 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 562 578 4.5E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00303 b269737eaad49accde9fc6d83f0e9f13 698 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 438 455 4.5E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00303 b269737eaad49accde9fc6d83f0e9f13 698 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 656 676 4.5E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00303 b269737eaad49accde9fc6d83f0e9f13 698 Gene3D G3DSA:3.40.225.10 24 234 3.5E-49 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily AMJ96_PC00303 b269737eaad49accde9fc6d83f0e9f13 698 SUPERFAMILY SSF51735 425 694 2.05E-64 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00303 b269737eaad49accde9fc6d83f0e9f13 698 SUPERFAMILY SSF53639 29 233 5.69E-27 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily AMJ96_CH01165 ca3fefb3cf0b5df47da37aea36363615 288 Pfam PF03466 LysR substrate binding domain 95 286 8.6E-26 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH01165 ca3fefb3cf0b5df47da37aea36363615 288 Gene3D G3DSA:1.10.10.10 9 97 2.0E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01165 ca3fefb3cf0b5df47da37aea36363615 288 SUPERFAMILY SSF46785 8 117 3.35E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01165 ca3fefb3cf0b5df47da37aea36363615 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 70 4.5E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01165 ca3fefb3cf0b5df47da37aea36363615 288 SUPERFAMILY SSF53850 96 287 3.08E-27 T 12-10-2018 AMJ96_CH01165 ca3fefb3cf0b5df47da37aea36363615 288 Gene3D G3DSA:3.40.190.290 99 285 1.5E-23 T 12-10-2018 AMJ96_CH01532 00c987190f9409bf4f3d8b55ca174457 357 SUPERFAMILY SSF56042 176 345 2.24E-58 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMJ96_CH01532 00c987190f9409bf4f3d8b55ca174457 357 Pfam PF00586 AIR synthase related protein, N-terminal domain 64 166 6.3E-15 T 12-10-2018 IPR016188 PurM-like, N-terminal domain AMJ96_CH01532 00c987190f9409bf4f3d8b55ca174457 357 Gene3D G3DSA:3.30.1330.10 8 173 3.1E-68 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMJ96_CH01532 00c987190f9409bf4f3d8b55ca174457 357 Pfam PF02769 AIR synthase related protein, C-terminal domain 180 346 4.5E-38 T 12-10-2018 IPR010918 PurM-like, C-terminal domain AMJ96_CH01532 00c987190f9409bf4f3d8b55ca174457 357 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 9 341 1.4E-136 T 12-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMJ96_CH01532 00c987190f9409bf4f3d8b55ca174457 357 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 9 350 45.374 T 12-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMJ96_CH01532 00c987190f9409bf4f3d8b55ca174457 357 SUPERFAMILY SSF55326 9 172 2.39E-48 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMJ96_CH01532 00c987190f9409bf4f3d8b55ca174457 357 Gene3D G3DSA:3.90.650.10 175 355 1.0E-70 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMJ96_CH00793 a08625b7160883511f47b402502b3e5c 326 Gene3D G3DSA:3.40.50.720 5 300 9.5E-89 T 12-10-2018 AMJ96_CH00793 a08625b7160883511f47b402502b3e5c 326 TIGRFAM TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family 5 298 3.3E-156 T 12-10-2018 IPR026390 NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family AMJ96_CH00793 a08625b7160883511f47b402502b3e5c 326 SUPERFAMILY SSF51735 1 318 6.71E-91 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00793 a08625b7160883511f47b402502b3e5c 326 Gene3D G3DSA:3.90.25.10 179 311 9.5E-89 T 12-10-2018 AMJ96_CH00793 a08625b7160883511f47b402502b3e5c 326 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 305 2.3E-67 T 12-10-2018 IPR016040 NAD(P)-binding domain AMJ96_CH03600 130db66dec640aa6ac289e9590be3cf2 448 Pfam PF00534 Glycosyl transferases group 1 257 392 1.2E-16 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 AMJ96_CH03600 130db66dec640aa6ac289e9590be3cf2 448 SUPERFAMILY SSF53756 34 415 1.3E-41 T 12-10-2018 AMJ96_CH03600 130db66dec640aa6ac289e9590be3cf2 448 Gene3D G3DSA:3.40.50.2000 253 404 9.6E-26 T 12-10-2018 AMJ96_PC00440 44ee34cd3ef48ebfc20751d655e28f1a 261 Pfam PF01614 Bacterial transcriptional regulator 132 250 8.5E-14 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal AMJ96_PC00440 44ee34cd3ef48ebfc20751d655e28f1a 261 SMART SM00346 11 100 1.1E-12 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMJ96_PC00440 44ee34cd3ef48ebfc20751d655e28f1a 261 SUPERFAMILY SSF46785 13 80 1.62E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00440 44ee34cd3ef48ebfc20751d655e28f1a 261 Pfam PF09339 IclR helix-turn-helix domain 13 62 6.3E-11 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMJ96_PC00440 44ee34cd3ef48ebfc20751d655e28f1a 261 Gene3D G3DSA:1.10.10.10 3 80 7.7E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00440 44ee34cd3ef48ebfc20751d655e28f1a 261 SUPERFAMILY SSF55781 76 252 1.5E-32 T 12-10-2018 AMJ96_PC00440 44ee34cd3ef48ebfc20751d655e28f1a 261 Gene3D G3DSA:3.30.450.40 82 251 8.9E-30 T 12-10-2018 IPR029016 GAF-like domain superfamily AMJ96_CH00401 7f44964ff50fb3b6b7fe192dbc215630 354 Pfam PF00579 tRNA synthetases class I (W and Y) 8 290 7.0E-71 T 12-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH00401 7f44964ff50fb3b6b7fe192dbc215630 354 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 5 353 37.94 T 12-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 AMJ96_CH00401 7f44964ff50fb3b6b7fe192dbc215630 354 SUPERFAMILY SSF52374 7 352 9.19E-89 T 12-10-2018 AMJ96_CH00401 7f44964ff50fb3b6b7fe192dbc215630 354 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 217 227 3.5E-26 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMJ96_CH00401 7f44964ff50fb3b6b7fe192dbc215630 354 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 18 34 3.5E-26 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMJ96_CH00401 7f44964ff50fb3b6b7fe192dbc215630 354 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 144 165 3.5E-26 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMJ96_CH00401 7f44964ff50fb3b6b7fe192dbc215630 354 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 68 87 3.5E-26 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMJ96_CH00401 7f44964ff50fb3b6b7fe192dbc215630 354 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 5 352 1.8E-84 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AMJ96_CH00401 7f44964ff50fb3b6b7fe192dbc215630 354 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 14 23 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH00401 7f44964ff50fb3b6b7fe192dbc215630 354 Gene3D G3DSA:1.10.240.10 208 320 1.7E-120 T 12-10-2018 AMJ96_CH00401 7f44964ff50fb3b6b7fe192dbc215630 354 Gene3D G3DSA:3.40.50.620 8 351 1.7E-120 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH02786 524d17cdf18ca9228b5259049728a3de 340 PRINTS PR00423 Cell division protein FtsZ signature 127 148 4.1E-48 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMJ96_CH02786 524d17cdf18ca9228b5259049728a3de 340 PRINTS PR00423 Cell division protein FtsZ signature 190 212 4.1E-48 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMJ96_CH02786 524d17cdf18ca9228b5259049728a3de 340 PRINTS PR00423 Cell division protein FtsZ signature 213 234 4.1E-48 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMJ96_CH02786 524d17cdf18ca9228b5259049728a3de 340 PRINTS PR00423 Cell division protein FtsZ signature 99 119 4.1E-48 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMJ96_CH02786 524d17cdf18ca9228b5259049728a3de 340 SUPERFAMILY SSF52490 14 209 7.2E-66 T 12-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 AMJ96_CH02786 524d17cdf18ca9228b5259049728a3de 340 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 14 174 5.4E-41 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMJ96_CH02786 524d17cdf18ca9228b5259049728a3de 340 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 10 340 36.208 T 12-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 AMJ96_CH02786 524d17cdf18ca9228b5259049728a3de 340 SMART SM00865 208 326 1.0E-52 T 12-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 AMJ96_CH02786 524d17cdf18ca9228b5259049728a3de 340 Pfam PF12327 FtsZ family, C-terminal domain 223 318 2.1E-36 T 12-10-2018 IPR024757 Cell division protein FtsZ, C-terminal AMJ96_CH02786 524d17cdf18ca9228b5259049728a3de 340 ProSitePatterns PS01135 FtsZ protein signature 2. 98 119 - T 12-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AMJ96_CH02786 524d17cdf18ca9228b5259049728a3de 340 SMART SM00864 14 206 2.6E-104 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AMJ96_CH02786 524d17cdf18ca9228b5259049728a3de 340 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 13 325 2.0E-120 T 12-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 AMJ96_CH02786 524d17cdf18ca9228b5259049728a3de 340 SUPERFAMILY SSF55307 206 320 3.66E-41 T 12-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 AMJ96_CH02786 524d17cdf18ca9228b5259049728a3de 340 Gene3D G3DSA:3.40.50.1440 11 318 2.3E-115 T 12-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 AMJ96_CH02786 524d17cdf18ca9228b5259049728a3de 340 ProSitePatterns PS01134 FtsZ protein signature 1. 45 79 - T 12-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AMJ96_CH02701 dd875ed82dbf2b219cee7bde15bc3593 606 Gene3D G3DSA:3.30.450.20 32 182 5.1E-59 T 12-10-2018 AMJ96_CH02701 dd875ed82dbf2b219cee7bde15bc3593 606 SMART SM00283 343 590 3.0E-102 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH02701 dd875ed82dbf2b219cee7bde15bc3593 606 Pfam PF00672 HAMP domain 210 257 3.2E-8 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH02701 dd875ed82dbf2b219cee7bde15bc3593 606 Pfam PF17200 Single Cache domain 2 37 181 3.3E-44 T 12-10-2018 IPR033480 Single Cache domain 2 AMJ96_CH02701 dd875ed82dbf2b219cee7bde15bc3593 606 SMART SM01049 33 127 1.4E-40 T 12-10-2018 IPR033480 Single Cache domain 2 AMJ96_CH02701 dd875ed82dbf2b219cee7bde15bc3593 606 Gene3D G3DSA:1.10.287.950 293 592 2.6E-79 T 12-10-2018 AMJ96_CH02701 dd875ed82dbf2b219cee7bde15bc3593 606 Gene3D G3DSA:1.20.1480.50 183 266 1.2E-12 T 12-10-2018 AMJ96_CH02701 dd875ed82dbf2b219cee7bde15bc3593 606 SMART SM00304 210 263 8.9E-6 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH02701 dd875ed82dbf2b219cee7bde15bc3593 606 SMART SM00304 291 342 0.67 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH02701 dd875ed82dbf2b219cee7bde15bc3593 606 SUPERFAMILY SSF58104 318 591 1.31E-67 T 12-10-2018 AMJ96_CH02701 dd875ed82dbf2b219cee7bde15bc3593 606 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 403 558 4.7E-50 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH02701 dd875ed82dbf2b219cee7bde15bc3593 606 SUPERFAMILY SSF158472 210 259 2.48E-8 T 12-10-2018 AMJ96_PB00181 01ed36b0686cdda9f9988a4edb55793c 753 SUPERFAMILY SSF58104 423 704 6.41E-65 T 12-10-2018 AMJ96_PB00181 01ed36b0686cdda9f9988a4edb55793c 753 Gene3D G3DSA:1.10.287.950 403 705 7.0E-74 T 12-10-2018 AMJ96_PB00181 01ed36b0686cdda9f9988a4edb55793c 753 SMART SM00304 321 374 8.0E-5 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PB00181 01ed36b0686cdda9f9988a4edb55793c 753 SMART SM00304 403 455 32.0 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PB00181 01ed36b0686cdda9f9988a4edb55793c 753 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 583 612 2.8E-42 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_PB00181 01ed36b0686cdda9f9988a4edb55793c 753 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 631 660 2.8E-42 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_PB00181 01ed36b0686cdda9f9988a4edb55793c 753 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 554 581 2.8E-42 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_PB00181 01ed36b0686cdda9f9988a4edb55793c 753 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 477 506 2.8E-42 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_PB00181 01ed36b0686cdda9f9988a4edb55793c 753 SUPERFAMILY SSF158472 321 368 2.62E-7 T 12-10-2018 AMJ96_PB00181 01ed36b0686cdda9f9988a4edb55793c 753 Pfam PF08376 Nitrate and nitrite sensing 45 283 2.3E-16 T 12-10-2018 IPR013587 Nitrate/nitrite sensing protein AMJ96_PB00181 01ed36b0686cdda9f9988a4edb55793c 753 SMART SM00283 456 703 3.5E-86 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_PB00181 01ed36b0686cdda9f9988a4edb55793c 753 Gene3D G3DSA:1.20.1480.50 288 379 1.3E-10 T 12-10-2018 AMJ96_PB00181 01ed36b0686cdda9f9988a4edb55793c 753 Pfam PF00672 HAMP domain 321 360 1.0E-6 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PB00181 01ed36b0686cdda9f9988a4edb55793c 753 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 517 670 1.4E-49 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH02462 a2402e739b17f107bcd1771225c67e18 309 SUPERFAMILY SSF53822 28 304 2.2E-74 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH02462 a2402e739b17f107bcd1771225c67e18 309 Gene3D G3DSA:3.40.50.2300 30 285 3.1E-72 T 12-10-2018 AMJ96_CH02462 a2402e739b17f107bcd1771225c67e18 309 Pfam PF13407 Periplasmic binding protein domain 30 284 5.1E-53 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_CH02462 a2402e739b17f107bcd1771225c67e18 309 Gene3D G3DSA:3.40.50.2300 129 263 3.1E-72 T 12-10-2018 AMJ96_CH03800 5f5cc111c250eb7b6ee74891f62ffcd8 657 Pfam PF02872 5'-nucleotidase, C-terminal domain 336 497 3.2E-46 T 12-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH03800 5f5cc111c250eb7b6ee74891f62ffcd8 657 SMART SM00257 608 655 1.7E-6 T 12-10-2018 IPR018392 LysM domain AMJ96_CH03800 5f5cc111c250eb7b6ee74891f62ffcd8 657 ProSitePatterns PS00786 5'-nucleotidase signature 2. 115 126 - T 12-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH03800 5f5cc111c250eb7b6ee74891f62ffcd8 657 Gene3D G3DSA:3.60.21.10 20 340 3.6E-105 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like AMJ96_CH03800 5f5cc111c250eb7b6ee74891f62ffcd8 657 Gene3D G3DSA:3.10.350.10 606 655 2.8E-8 T 12-10-2018 IPR036779 LysM domain superfamily AMJ96_CH03800 5f5cc111c250eb7b6ee74891f62ffcd8 657 SUPERFAMILY SSF55816 335 533 1.31E-66 T 12-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH03800 5f5cc111c250eb7b6ee74891f62ffcd8 657 Pfam PF01476 LysM domain 609 655 5.8E-7 T 12-10-2018 IPR018392 LysM domain AMJ96_CH03800 5f5cc111c250eb7b6ee74891f62ffcd8 657 ProSitePatterns PS00785 5'-nucleotidase signature 1. 28 40 - T 12-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH03800 5f5cc111c250eb7b6ee74891f62ffcd8 657 SUPERFAMILY SSF56300 26 331 6.65E-90 T 12-10-2018 AMJ96_CH03800 5f5cc111c250eb7b6ee74891f62ffcd8 657 Gene3D G3DSA:3.90.780.10 341 535 9.2E-73 T 12-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH03800 5f5cc111c250eb7b6ee74891f62ffcd8 657 PRINTS PR01607 Apyrase family signature 273 293 1.4E-41 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH03800 5f5cc111c250eb7b6ee74891f62ffcd8 657 PRINTS PR01607 Apyrase family signature 470 489 1.4E-41 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH03800 5f5cc111c250eb7b6ee74891f62ffcd8 657 PRINTS PR01607 Apyrase family signature 212 229 1.4E-41 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH03800 5f5cc111c250eb7b6ee74891f62ffcd8 657 PRINTS PR01607 Apyrase family signature 26 44 1.4E-41 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH03800 5f5cc111c250eb7b6ee74891f62ffcd8 657 PRINTS PR01607 Apyrase family signature 231 254 1.4E-41 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH03800 5f5cc111c250eb7b6ee74891f62ffcd8 657 PRINTS PR01607 Apyrase family signature 393 416 1.4E-41 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH03800 5f5cc111c250eb7b6ee74891f62ffcd8 657 Pfam PF00149 Calcineurin-like phosphoesterase 28 248 7.1E-12 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 Gene3D G3DSA:1.20.1640.10 639 838 6.9E-14 T 12-10-2018 AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 SUPERFAMILY SSF82866 324 523 4.19E-44 T 12-10-2018 AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 SUPERFAMILY SSF82866 608 822 4.32E-40 T 12-10-2018 AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 569 814 5.0E-79 T 12-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 Gene3D G3DSA:3.30.1360.200 208 346 1.5E-40 T 12-10-2018 AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 PRINTS PR01755 Bacterial translocase SecF protein signature 682 696 1.4E-31 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 PRINTS PR01755 Bacterial translocase SecF protein signature 730 748 1.4E-31 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 PRINTS PR01755 Bacterial translocase SecF protein signature 568 583 1.4E-31 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 PRINTS PR01755 Bacterial translocase SecF protein signature 762 777 1.4E-31 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 Pfam PF07549 SecD/SecF GG Motif 47 63 4.2E-4 T 12-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 Pfam PF07549 SecD/SecF GG Motif 564 588 1.2E-7 T 12-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 Gene3D G3DSA:3.30.70.3400 154 348 1.5E-40 T 12-10-2018 AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 278 508 1.8E-70 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 620 811 2.5E-56 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 541 825 28.39 T 12-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 Gene3D G3DSA:1.20.1640.10 365 526 2.7E-8 T 12-10-2018 AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 Gene3D G3DSA:1.20.1640.10 527 572 2.7E-8 T 12-10-2018 AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 Pfam PF02355 Protein export membrane protein 350 518 1.5E-19 T 12-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 Pfam PF02355 Protein export membrane protein 645 821 4.4E-65 T 12-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 47 515 2.1E-119 T 12-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AMJ96_CH01886 d579fb911861bf8f8670ac888fe4a232 846 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 527 36.658 T 12-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AMJ96_CH02371 119391a02019aff89e3079211ccd52ec 275 PRINTS PR00377 Inositol monophosphatase superfamily signature 92 108 2.2E-18 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH02371 119391a02019aff89e3079211ccd52ec 275 PRINTS PR00377 Inositol monophosphatase superfamily signature 141 164 2.2E-18 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH02371 119391a02019aff89e3079211ccd52ec 275 PRINTS PR00377 Inositol monophosphatase superfamily signature 65 81 2.2E-18 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH02371 119391a02019aff89e3079211ccd52ec 275 PRINTS PR00377 Inositol monophosphatase superfamily signature 43 63 2.2E-18 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH02371 119391a02019aff89e3079211ccd52ec 275 PRINTS PR00377 Inositol monophosphatase superfamily signature 220 244 2.2E-18 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH02371 119391a02019aff89e3079211ccd52ec 275 Gene3D G3DSA:3.30.540.10 9 151 5.0E-38 T 12-10-2018 AMJ96_CH02371 119391a02019aff89e3079211ccd52ec 275 Pfam PF00459 Inositol monophosphatase family 16 260 8.9E-45 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH02371 119391a02019aff89e3079211ccd52ec 275 Gene3D G3DSA:3.40.190.80 158 272 1.7E-15 T 12-10-2018 AMJ96_CH02371 119391a02019aff89e3079211ccd52ec 275 SUPERFAMILY SSF56655 17 272 1.1E-64 T 12-10-2018 AMJ96_PC00419 49bcf93afe8409c8324ccaeb6600b678 422 Gene3D G3DSA:3.50.50.60 6 421 6.4E-58 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00419 49bcf93afe8409c8324ccaeb6600b678 422 SUPERFAMILY SSF51905 10 415 1.79E-44 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00419 49bcf93afe8409c8324ccaeb6600b678 422 SUPERFAMILY SSF54373 261 365 3.53E-13 T 12-10-2018 AMJ96_PC00419 49bcf93afe8409c8324ccaeb6600b678 422 Pfam PF01593 Flavin containing amine oxidoreductase 21 415 1.5E-41 T 12-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 AMJ96_CH00514 e49d09d9f5fb355b40f6b6878d573690 500 Gene3D G3DSA:3.90.1210.30 6 81 8.5E-22 T 12-10-2018 AMJ96_CH00514 e49d09d9f5fb355b40f6b6878d573690 500 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 104 498 3.6E-151 T 12-10-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 AMJ96_CH00514 e49d09d9f5fb355b40f6b6878d573690 500 SMART SM00858 13 80 1.8E-12 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMJ96_CH00514 e49d09d9f5fb355b40f6b6878d573690 500 Pfam PF08666 SAF domain 13 79 3.9E-11 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMJ96_CH02160 d32b400cae4d927bce9e82ee78c54200 109 TIGRFAM TIGR02097 yccV: hemimethylated DNA binding domain 6 104 7.4E-41 T 12-10-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 AMJ96_CH02160 d32b400cae4d927bce9e82ee78c54200 109 SMART SM00992 5 104 9.7E-55 T 12-10-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 AMJ96_CH02160 d32b400cae4d927bce9e82ee78c54200 109 Pfam PF08755 Hemimethylated DNA-binding protein YccV like 6 96 9.5E-27 T 12-10-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 AMJ96_CH02160 d32b400cae4d927bce9e82ee78c54200 109 Gene3D G3DSA:2.30.30.390 4 106 3.1E-31 T 12-10-2018 IPR036623 Hemimethylated DNA-binding domain superfamily GO:0003677 AMJ96_CH02160 d32b400cae4d927bce9e82ee78c54200 109 SUPERFAMILY SSF141255 6 96 2.35E-34 T 12-10-2018 IPR036623 Hemimethylated DNA-binding domain superfamily GO:0003677 AMJ96_CH04066 802c749726d3b407da1cc6e6f67c06f3 205 PRINTS PR00625 DnaJ domain signature 167 182 1.8E-10 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH04066 802c749726d3b407da1cc6e6f67c06f3 205 PRINTS PR00625 DnaJ domain signature 184 204 1.8E-10 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH04066 802c749726d3b407da1cc6e6f67c06f3 205 PRINTS PR00625 DnaJ domain signature 149 167 1.8E-10 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH04066 802c749726d3b407da1cc6e6f67c06f3 205 SMART SM00271 146 204 2.2E-14 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH04066 802c749726d3b407da1cc6e6f67c06f3 205 Gene3D G3DSA:1.10.287.110 134 203 4.5E-14 T 12-10-2018 IPR036869 Chaperone J-domain superfamily AMJ96_CH04066 802c749726d3b407da1cc6e6f67c06f3 205 Pfam PF00226 DnaJ domain 149 201 4.2E-14 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH04066 802c749726d3b407da1cc6e6f67c06f3 205 SUPERFAMILY SSF46565 147 200 1.01E-14 T 12-10-2018 IPR036869 Chaperone J-domain superfamily AMJ96_CH03549 71f0f0e4ce8fdcec392a038726b2f63b 233 Gene3D G3DSA:1.10.10.10 119 229 4.7E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03549 71f0f0e4ce8fdcec392a038726b2f63b 233 Gene3D G3DSA:3.40.50.2300 1 118 2.0E-34 T 12-10-2018 AMJ96_CH03549 71f0f0e4ce8fdcec392a038726b2f63b 233 Pfam PF00072 Response regulator receiver domain 3 112 2.8E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03549 71f0f0e4ce8fdcec392a038726b2f63b 233 SMART SM00448 1 112 8.3E-38 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03549 71f0f0e4ce8fdcec392a038726b2f63b 233 SMART SM00862 145 221 1.2E-20 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH03549 71f0f0e4ce8fdcec392a038726b2f63b 233 SUPERFAMILY SSF52172 1 174 6.83E-38 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH03549 71f0f0e4ce8fdcec392a038726b2f63b 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 221 6.6E-20 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_PA00271 cba3cd9708a251023f29924a929eb2de 304 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 50 274 6.9E-113 T 12-10-2018 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 KEGG: 00190+2.7.4.1 AMJ96_PA00271 cba3cd9708a251023f29924a929eb2de 304 Gene3D G3DSA:3.40.50.300 9 288 7.9E-99 T 12-10-2018 AMJ96_PA00271 cba3cd9708a251023f29924a929eb2de 304 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 49 274 5.0E-111 T 12-10-2018 IPR022488 Polyphosphate kinase-2-related AMJ96_PA00271 cba3cd9708a251023f29924a929eb2de 304 SUPERFAMILY SSF52540 80 269 6.14E-28 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00271 cba3cd9708a251023f29924a929eb2de 304 PIRSF PIRSF028756 11 304 8.1E-130 T 12-10-2018 IPR016898 Polyphosphate kinase 2 KEGG: 00190+2.7.4.1 AMJ96_CH03306 a4410e949fca9353f4eeec25fb23be63 342 SUPERFAMILY SSF47413 13 72 8.44E-14 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH03306 a4410e949fca9353f4eeec25fb23be63 342 Gene3D G3DSA:3.40.50.2300 68 314 4.0E-73 T 12-10-2018 AMJ96_CH03306 a4410e949fca9353f4eeec25fb23be63 342 SUPERFAMILY SSF53822 74 340 2.75E-69 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH03306 a4410e949fca9353f4eeec25fb23be63 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 15 60 1.7E-13 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03306 a4410e949fca9353f4eeec25fb23be63 342 ProSitePatterns PS00356 LacI-type HTH domain signature. 16 34 - T 12-10-2018 AMJ96_CH03306 a4410e949fca9353f4eeec25fb23be63 342 Gene3D G3DSA:3.40.50.2300 171 300 4.0E-73 T 12-10-2018 AMJ96_CH03306 a4410e949fca9353f4eeec25fb23be63 342 Pfam PF13377 Periplasmic binding protein-like domain 179 338 1.0E-33 T 12-10-2018 AMJ96_CH03306 a4410e949fca9353f4eeec25fb23be63 342 Gene3D G3DSA:1.10.260.40 6 67 5.5E-18 T 12-10-2018 AMJ96_CH03306 a4410e949fca9353f4eeec25fb23be63 342 SMART SM00354 13 84 5.5E-20 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH00972 0969f64878ae42f4d8de99b4416dff47 294 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 199 247 - T 12-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00972 0969f64878ae42f4d8de99b4416dff47 294 Gene3D G3DSA:2.60.40.420 121 267 4.1E-52 T 12-10-2018 IPR008972 Cupredoxin AMJ96_CH00972 0969f64878ae42f4d8de99b4416dff47 294 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 124 254 3.3E-44 T 12-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00972 0969f64878ae42f4d8de99b4416dff47 294 SUPERFAMILY SSF49503 121 266 1.83E-49 T 12-10-2018 IPR008972 Cupredoxin AMJ96_CH00972 0969f64878ae42f4d8de99b4416dff47 294 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 36 263 9.0E-56 T 12-10-2018 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00972 0969f64878ae42f4d8de99b4416dff47 294 Gene3D G3DSA:1.10.287.90 24 119 5.7E-33 T 12-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00972 0969f64878ae42f4d8de99b4416dff47 294 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 25 111 1.2E-23 T 12-10-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00972 0969f64878ae42f4d8de99b4416dff47 294 PRINTS PR01166 Cytochrome c oxidase subunit II signature 120 139 3.9E-38 T 12-10-2018 AMJ96_CH00972 0969f64878ae42f4d8de99b4416dff47 294 PRINTS PR01166 Cytochrome c oxidase subunit II signature 218 235 3.9E-38 T 12-10-2018 AMJ96_CH00972 0969f64878ae42f4d8de99b4416dff47 294 PRINTS PR01166 Cytochrome c oxidase subunit II signature 236 253 3.9E-38 T 12-10-2018 AMJ96_CH00972 0969f64878ae42f4d8de99b4416dff47 294 PRINTS PR01166 Cytochrome c oxidase subunit II signature 97 117 3.9E-38 T 12-10-2018 AMJ96_CH00972 0969f64878ae42f4d8de99b4416dff47 294 PRINTS PR01166 Cytochrome c oxidase subunit II signature 85 97 3.9E-38 T 12-10-2018 AMJ96_CH00972 0969f64878ae42f4d8de99b4416dff47 294 PRINTS PR01166 Cytochrome c oxidase subunit II signature 198 218 3.9E-38 T 12-10-2018 AMJ96_CH00972 0969f64878ae42f4d8de99b4416dff47 294 SUPERFAMILY SSF81464 17 113 1.8E-27 T 12-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH04280 cc5cb529882e6bfaa956ee003c04ee36 175 Gene3D G3DSA:1.10.10.10 3 163 4.1E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH04280 cc5cb529882e6bfaa956ee003c04ee36 175 SMART SM00347 45 148 4.3E-10 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH04280 cc5cb529882e6bfaa956ee003c04ee36 175 SUPERFAMILY SSF46785 25 161 4.77E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH04280 cc5cb529882e6bfaa956ee003c04ee36 175 Pfam PF12802 MarR family 51 112 3.3E-13 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH02561 20939af454a72e6a56cbbf542d8d0124 348 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 165 303 6.3E-21 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH02561 20939af454a72e6a56cbbf542d8d0124 348 SUPERFAMILY SSF55073 163 344 1.88E-42 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02561 20939af454a72e6a56cbbf542d8d0124 348 SMART SM00044 130 329 8.9E-5 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH02561 20939af454a72e6a56cbbf542d8d0124 348 Gene3D G3DSA:3.30.70.1230 156 348 3.4E-43 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_PD00304 db547130cde0271df0220e2d06eb7922 329 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 318 1.6E-41 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03273 8be189637f3901b8cd794d0fc34de88f 419 Pfam PF04542 Sigma-70 region 2 15 77 2.2E-11 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03273 8be189637f3901b8cd794d0fc34de88f 419 Gene3D G3DSA:1.25.40.10 199 413 1.2E-7 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03273 8be189637f3901b8cd794d0fc34de88f 419 Gene3D G3DSA:1.10.10.10 83 169 1.7E-7 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03273 8be189637f3901b8cd794d0fc34de88f 419 SUPERFAMILY SSF88946 11 95 5.49E-13 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03273 8be189637f3901b8cd794d0fc34de88f 419 Gene3D G3DSA:1.10.1740.10 5 78 7.8E-7 T 12-10-2018 AMJ96_CH03273 8be189637f3901b8cd794d0fc34de88f 419 SUPERFAMILY SSF48452 316 403 6.73E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03273 8be189637f3901b8cd794d0fc34de88f 419 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 167 1.7E-16 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03273 8be189637f3901b8cd794d0fc34de88f 419 SUPERFAMILY SSF88659 107 166 9.59E-10 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_CH03273 8be189637f3901b8cd794d0fc34de88f 419 Pfam PF08281 Sigma-70, region 4 114 164 1.3E-8 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_CH02112 4d4e92c30800bd92e6f3c478b04e5e27 660 Gene3D G3DSA:1.10.3720.10 457 646 1.1E-29 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02112 4d4e92c30800bd92e6f3c478b04e5e27 660 Gene3D G3DSA:1.10.3720.10 139 338 5.2E-32 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02112 4d4e92c30800bd92e6f3c478b04e5e27 660 SUPERFAMILY SSF161098 460 644 5.1E-34 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02112 4d4e92c30800bd92e6f3c478b04e5e27 660 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 167 327 4.8E-22 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02112 4d4e92c30800bd92e6f3c478b04e5e27 660 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 483 645 1.5E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02112 4d4e92c30800bd92e6f3c478b04e5e27 660 SUPERFAMILY SSF161098 147 332 3.79E-34 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02220 3502f5756bd1dbc07331e72a4eac7035 367 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 19 186 23.629 T 12-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 AMJ96_CH02220 3502f5756bd1dbc07331e72a4eac7035 367 Pfam PF03330 Lytic transglycolase 95 183 6.8E-23 T 12-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain AMJ96_CH02220 3502f5756bd1dbc07331e72a4eac7035 367 SUPERFAMILY SSF50685 91 185 1.12E-9 T 12-10-2018 IPR036908 RlpA-like domain superfamily AMJ96_CH02220 3502f5756bd1dbc07331e72a4eac7035 367 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 96 190 1.2E-39 T 12-10-2018 IPR012997 Rare lipoprotein A AMJ96_CH02220 3502f5756bd1dbc07331e72a4eac7035 367 Gene3D G3DSA:2.40.40.10 94 186 2.4E-33 T 12-10-2018 IPR036908 RlpA-like domain superfamily AMJ96_CH03074 cffb1f8b2c66c970acdb654f67dbdeb9 1257 TIGRFAM TIGR02082 metH: methionine synthase 27 1212 0.0 T 12-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMJ96_CH03074 cffb1f8b2c66c970acdb654f67dbdeb9 1257 SMART SM01018 669 752 5.0E-46 T 12-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMJ96_CH03074 cffb1f8b2c66c970acdb654f67dbdeb9 1257 Gene3D G3DSA:1.10.288.10 955 1112 2.0E-145 T 12-10-2018 AMJ96_CH03074 cffb1f8b2c66c970acdb654f67dbdeb9 1257 Pfam PF00809 Pterin binding enzyme 373 611 4.1E-60 T 12-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMJ96_CH03074 cffb1f8b2c66c970acdb654f67dbdeb9 1257 Gene3D G3DSA:3.10.196.10 926 1242 2.0E-145 T 12-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMJ96_CH03074 cffb1f8b2c66c970acdb654f67dbdeb9 1257 SUPERFAMILY SSF51717 369 643 3.14E-89 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMJ96_CH03074 cffb1f8b2c66c970acdb654f67dbdeb9 1257 Gene3D G3DSA:1.10.1240.10 661 749 3.9E-40 T 12-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMJ96_CH03074 cffb1f8b2c66c970acdb654f67dbdeb9 1257 Gene3D G3DSA:3.20.20.330 16 352 9.8E-126 T 12-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 AMJ96_CH03074 cffb1f8b2c66c970acdb654f67dbdeb9 1257 SUPERFAMILY SSF47644 664 751 5.1E-29 T 12-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMJ96_CH03074 cffb1f8b2c66c970acdb654f67dbdeb9 1257 Pfam PF02310 B12 binding domain 765 855 7.0E-17 T 12-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 AMJ96_CH03074 cffb1f8b2c66c970acdb654f67dbdeb9 1257 SUPERFAMILY SSF52242 759 911 8.63E-44 T 12-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 AMJ96_CH03074 cffb1f8b2c66c970acdb654f67dbdeb9 1257 Gene3D G3DSA:3.40.50.280 761 913 3.2E-52 T 12-10-2018 AMJ96_CH03074 cffb1f8b2c66c970acdb654f67dbdeb9 1257 Pfam PF02607 B12 binding domain 671 744 2.9E-25 T 12-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMJ96_CH03074 cffb1f8b2c66c970acdb654f67dbdeb9 1257 SUPERFAMILY SSF82282 22 412 1.06E-116 T 12-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 AMJ96_CH03074 cffb1f8b2c66c970acdb654f67dbdeb9 1257 Pfam PF02574 Homocysteine S-methyltransferase 31 338 6.2E-79 T 12-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 AMJ96_CH03074 cffb1f8b2c66c970acdb654f67dbdeb9 1257 PIRSF PIRSF000381 16 1215 0.0 T 12-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMJ96_CH03074 cffb1f8b2c66c970acdb654f67dbdeb9 1257 Gene3D G3DSA:3.20.20.20 353 655 7.9E-134 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMJ96_CH03074 cffb1f8b2c66c970acdb654f67dbdeb9 1257 SUPERFAMILY SSF56507 921 1246 2.62E-133 T 12-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMJ96_CH03074 cffb1f8b2c66c970acdb654f67dbdeb9 1257 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 956 1228 1.4E-120 T 12-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AMJ96_CH00047 38e89816e3e1fb4720d5007e0dda6f65 161 Pfam PF10947 Protein of unknown function (DUF2628) 23 91 1.6E-9 T 12-10-2018 IPR024399 Protein of unknown function DUF2628 AMJ96_PB00177 381c7a33fc5f1dfcf6ac95f243f8b03c 367 SMART SM00829 13 365 1.3E-6 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_PB00177 381c7a33fc5f1dfcf6ac95f243f8b03c 367 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMJ96_PB00177 381c7a33fc5f1dfcf6ac95f243f8b03c 367 SUPERFAMILY SSF50129 2 194 3.04E-52 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_PB00177 381c7a33fc5f1dfcf6ac95f243f8b03c 367 Pfam PF00107 Zinc-binding dehydrogenase 198 322 1.0E-24 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_PB00177 381c7a33fc5f1dfcf6ac95f243f8b03c 367 SUPERFAMILY SSF51735 160 331 4.42E-41 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PB00177 381c7a33fc5f1dfcf6ac95f243f8b03c 367 Gene3D G3DSA:3.90.180.10 8 361 5.6E-125 T 12-10-2018 AMJ96_PB00177 381c7a33fc5f1dfcf6ac95f243f8b03c 367 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 113 8.2E-23 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_PB00177 381c7a33fc5f1dfcf6ac95f243f8b03c 367 Gene3D G3DSA:3.40.50.720 175 310 5.6E-125 T 12-10-2018 AMJ96_PA00304 05a196f747f56c74efe91abb7e3f0b3e 329 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 67 246 1.9E-30 T 12-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 AMJ96_PA00304 05a196f747f56c74efe91abb7e3f0b3e 329 SUPERFAMILY SSF110849 68 160 2.27E-16 T 12-10-2018 IPR036086 ParB/Sulfiredoxin superfamily AMJ96_PA00304 05a196f747f56c74efe91abb7e3f0b3e 329 SUPERFAMILY SSF109709 153 230 2.75E-7 T 12-10-2018 AMJ96_PA00304 05a196f747f56c74efe91abb7e3f0b3e 329 Pfam PF07506 RepB plasmid partitioning protein 161 322 4.6E-19 T 12-10-2018 IPR011111 RepB plasmid partition AMJ96_PA00304 05a196f747f56c74efe91abb7e3f0b3e 329 SMART SM00470 67 159 7.6E-21 T 12-10-2018 IPR003115 ParB/Sulfiredoxin AMJ96_PA00304 05a196f747f56c74efe91abb7e3f0b3e 329 Pfam PF02195 ParB-like nuclease domain 81 158 2.3E-16 T 12-10-2018 IPR003115 ParB/Sulfiredoxin AMJ96_PA00304 05a196f747f56c74efe91abb7e3f0b3e 329 TIGRFAM TIGR03454 partition_RepB: plasmid partitioning protein RepB 18 323 3.7E-100 T 12-10-2018 IPR017819 Plasmid partitioning protein, RepB AMJ96_PA00304 05a196f747f56c74efe91abb7e3f0b3e 329 Gene3D G3DSA:3.90.1530.30 82 145 1.6E-10 T 12-10-2018 AMJ96_CH03147 bc69349b3fb3c43661e465eca413a2cb 340 Pfam PF13460 NAD(P)H-binding 13 163 3.8E-13 T 12-10-2018 IPR016040 NAD(P)-binding domain AMJ96_CH03147 bc69349b3fb3c43661e465eca413a2cb 340 SUPERFAMILY SSF51735 8 313 5.56E-41 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03147 bc69349b3fb3c43661e465eca413a2cb 340 Gene3D G3DSA:3.40.50.720 9 317 3.9E-32 T 12-10-2018 AMJ96_PA00027 9b27b7baae3b366916ace1949d0521e8 311 Gene3D G3DSA:2.30.110.10 1 161 8.3E-53 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMJ96_PA00027 9b27b7baae3b366916ace1949d0521e8 311 Gene3D G3DSA:3.90.79.10 162 290 1.1E-36 T 12-10-2018 AMJ96_PA00027 9b27b7baae3b366916ace1949d0521e8 311 Pfam PF01613 Flavin reductase like domain 16 157 3.0E-31 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AMJ96_PA00027 9b27b7baae3b366916ace1949d0521e8 311 SUPERFAMILY SSF50475 6 158 1.03E-47 T 12-10-2018 AMJ96_PA00027 9b27b7baae3b366916ace1949d0521e8 311 SMART SM00903 15 158 2.0E-55 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AMJ96_CH03567 535fd8668725c34d4a1e5c382b461d31 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 246 2.1E-60 T 12-10-2018 AMJ96_CH03567 535fd8668725c34d4a1e5c382b461d31 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 186 0.0014 T 12-10-2018 AMJ96_CH03567 535fd8668725c34d4a1e5c382b461d31 247 Gene3D G3DSA:3.40.50.720 2 247 1.5E-80 T 12-10-2018 AMJ96_CH03567 535fd8668725c34d4a1e5c382b461d31 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 6.4E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03567 535fd8668725c34d4a1e5c382b461d31 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 6.4E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03567 535fd8668725c34d4a1e5c382b461d31 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 6.4E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03567 535fd8668725c34d4a1e5c382b461d31 247 SUPERFAMILY SSF51735 7 246 1.92E-81 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03567 535fd8668725c34d4a1e5c382b461d31 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 6.4E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03567 535fd8668725c34d4a1e5c382b461d31 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 6.4E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03567 535fd8668725c34d4a1e5c382b461d31 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 6.4E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03567 535fd8668725c34d4a1e5c382b461d31 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 6.4E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03567 535fd8668725c34d4a1e5c382b461d31 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 6.4E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03567 535fd8668725c34d4a1e5c382b461d31 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 6.4E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00432 d6176048479f20827d1bf8f5f02c72e7 86 Gene3D G3DSA:1.10.1220.10 6 77 3.7E-6 T 12-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AMJ96_CH00432 d6176048479f20827d1bf8f5f02c72e7 86 SUPERFAMILY SSF47598 3 68 2.22E-13 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMJ96_CH03782 26bbf605d6782d70fcaa015bd8c7cfdc 324 Gene3D G3DSA:3.40.50.1100 50 146 3.0E-99 T 12-10-2018 AMJ96_CH03782 26bbf605d6782d70fcaa015bd8c7cfdc 324 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 16 308 3.6E-71 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMJ96_CH03782 26bbf605d6782d70fcaa015bd8c7cfdc 324 Gene3D G3DSA:3.40.50.1100 13 312 3.0E-99 T 12-10-2018 AMJ96_CH03782 26bbf605d6782d70fcaa015bd8c7cfdc 324 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 42 55 - T 12-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AMJ96_CH03782 26bbf605d6782d70fcaa015bd8c7cfdc 324 SUPERFAMILY SSF53686 7 317 9.43E-87 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMJ96_CH03071 c1bffddf7f5036ab0a08a6559e66cba9 254 SUPERFAMILY SSF64288 73 250 4.55E-46 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMJ96_CH03071 c1bffddf7f5036ab0a08a6559e66cba9 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 85 2.9E-19 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH03071 c1bffddf7f5036ab0a08a6559e66cba9 254 Pfam PF07702 UTRA domain 109 244 2.4E-34 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMJ96_CH03071 c1bffddf7f5036ab0a08a6559e66cba9 254 Gene3D G3DSA:1.10.10.10 21 89 1.5E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03071 c1bffddf7f5036ab0a08a6559e66cba9 254 Gene3D G3DSA:3.40.1410.10 90 251 2.4E-43 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMJ96_CH03071 c1bffddf7f5036ab0a08a6559e66cba9 254 SMART SM00345 26 85 1.4E-21 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH03071 c1bffddf7f5036ab0a08a6559e66cba9 254 SUPERFAMILY SSF46785 17 88 1.45E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03071 c1bffddf7f5036ab0a08a6559e66cba9 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 59 75 3.6E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH03071 c1bffddf7f5036ab0a08a6559e66cba9 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 59 3.6E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH03071 c1bffddf7f5036ab0a08a6559e66cba9 254 SMART SM00866 108 244 3.0E-34 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMJ96_CH03001 87ca0119ad8ba4cf64a1c79dec619583 178 SUPERFAMILY SSF55729 17 177 4.63E-38 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH03001 87ca0119ad8ba4cf64a1c79dec619583 178 Gene3D G3DSA:3.40.630.30 17 178 1.2E-40 T 12-10-2018 AMJ96_CH03001 87ca0119ad8ba4cf64a1c79dec619583 178 Pfam PF00583 Acetyltransferase (GNAT) family 57 151 1.3E-14 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH02878 b235bf8570a1e65e0a5f151ccaabffd2 473 PIRSF PIRSF004810 11 472 1.5E-129 T 12-10-2018 IPR014047 Chromate transporter, long chain AMJ96_CH02878 b235bf8570a1e65e0a5f151ccaabffd2 473 TIGRFAM TIGR00937 2A51: chromate efflux transporter 36 412 2.6E-59 T 12-10-2018 IPR014047 Chromate transporter, long chain AMJ96_CH02878 b235bf8570a1e65e0a5f151ccaabffd2 473 Pfam PF02417 Chromate transporter 32 193 1.1E-31 T 12-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 AMJ96_CH02878 b235bf8570a1e65e0a5f151ccaabffd2 473 Pfam PF02417 Chromate transporter 270 465 6.7E-32 T 12-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 AMJ96_CH01331 b7885120429f443f9b429fdfa185b72b 664 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 315 640 1.1E-115 T 12-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal AMJ96_CH01331 b7885120429f443f9b429fdfa185b72b 664 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 643 1.6E-190 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH01331 b7885120429f443f9b429fdfa185b72b 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 633 646 1.4E-70 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH01331 b7885120429f443f9b429fdfa185b72b 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 313 328 1.4E-70 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH01331 b7885120429f443f9b429fdfa185b72b 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 1.4E-70 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH01331 b7885120429f443f9b429fdfa185b72b 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 394 413 1.4E-70 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH01331 b7885120429f443f9b429fdfa185b72b 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 189 204 1.4E-70 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH01331 b7885120429f443f9b429fdfa185b72b 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 351 368 1.4E-70 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH01331 b7885120429f443f9b429fdfa185b72b 664 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 1.4E-70 T 12-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH01331 b7885120429f443f9b429fdfa185b72b 664 Pfam PF01578 Cytochrome C assembly protein 89 295 3.7E-51 T 12-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AMJ96_CH01331 b7885120429f443f9b429fdfa185b72b 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 1.1E-98 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH01331 b7885120429f443f9b429fdfa185b72b 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 210 236 1.1E-98 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH01331 b7885120429f443f9b429fdfa185b72b 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 310 329 1.1E-98 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH01331 b7885120429f443f9b429fdfa185b72b 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 159 181 1.1E-98 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH01331 b7885120429f443f9b429fdfa185b72b 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 1.1E-98 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH01331 b7885120429f443f9b429fdfa185b72b 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 244 264 1.1E-98 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH01331 b7885120429f443f9b429fdfa185b72b 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 274 294 1.1E-98 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH01331 b7885120429f443f9b429fdfa185b72b 664 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 294 310 1.1E-98 T 12-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH02035 eaf0913f10365f0be5e28ced3c9fc412 257 Pfam PF00005 ABC transporter 24 185 6.2E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02035 eaf0913f10365f0be5e28ced3c9fc412 257 Gene3D G3DSA:3.40.50.300 6 255 2.7E-58 T 12-10-2018 AMJ96_CH02035 eaf0913f10365f0be5e28ced3c9fc412 257 SMART SM00382 32 233 0.0092 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02035 eaf0913f10365f0be5e28ced3c9fc412 257 SUPERFAMILY SSF52540 6 255 2.07E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02035 eaf0913f10365f0be5e28ced3c9fc412 257 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 235 256 3.6E-6 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMJ96_CH02035 eaf0913f10365f0be5e28ced3c9fc412 257 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03418 714fae6c70130604bb3cda05f1abd5a4 500 Pfam PF13440 Polysaccharide biosynthesis protein 32 320 8.5E-75 T 12-10-2018 AMJ96_PC00300 b4dddcea6be1ec8420a99cffb9f507f8 511 SUPERFAMILY SSF52540 279 498 1.18E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00300 b4dddcea6be1ec8420a99cffb9f507f8 511 SMART SM00382 45 234 6.6E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00300 b4dddcea6be1ec8420a99cffb9f507f8 511 SMART SM00382 294 488 2.4E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00300 b4dddcea6be1ec8420a99cffb9f507f8 511 SUPERFAMILY SSF52540 20 246 3.55E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00300 b4dddcea6be1ec8420a99cffb9f507f8 511 ProSitePatterns PS00211 ABC transporters family signature. 412 426 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00300 b4dddcea6be1ec8420a99cffb9f507f8 511 Gene3D G3DSA:3.40.50.300 271 506 6.3E-42 T 12-10-2018 AMJ96_PC00300 b4dddcea6be1ec8420a99cffb9f507f8 511 Gene3D G3DSA:3.40.50.300 5 261 6.3E-55 T 12-10-2018 AMJ96_PC00300 b4dddcea6be1ec8420a99cffb9f507f8 511 Pfam PF00005 ABC transporter 286 439 4.9E-20 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00300 b4dddcea6be1ec8420a99cffb9f507f8 511 Pfam PF00005 ABC transporter 36 186 4.3E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00148 2e0f82943a93315389543c2ebeea6489 307 Gene3D G3DSA:1.10.10.10 1 94 4.6E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00148 2e0f82943a93315389543c2ebeea6489 307 SUPERFAMILY SSF46785 1 85 1.6E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00148 2e0f82943a93315389543c2ebeea6489 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 63 4.2E-22 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00148 2e0f82943a93315389543c2ebeea6489 307 SUPERFAMILY SSF53850 91 293 2.02E-29 T 12-10-2018 AMJ96_PC00148 2e0f82943a93315389543c2ebeea6489 307 Pfam PF03466 LysR substrate binding domain 91 288 2.1E-31 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PC00148 2e0f82943a93315389543c2ebeea6489 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.7E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00148 2e0f82943a93315389543c2ebeea6489 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.7E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00148 2e0f82943a93315389543c2ebeea6489 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.7E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00148 2e0f82943a93315389543c2ebeea6489 307 Gene3D G3DSA:3.40.190.10 96 285 2.9E-39 T 12-10-2018 AMJ96_PC00148 2e0f82943a93315389543c2ebeea6489 307 Gene3D G3DSA:3.40.190.10 164 267 2.9E-39 T 12-10-2018 AMJ96_CH00154 3bfd5aced2a093d7d3d52bfe828f49b3 462 Gene3D G3DSA:3.40.630.10 20 453 7.2E-149 T 12-10-2018 AMJ96_CH00154 3bfd5aced2a093d7d3d52bfe828f49b3 462 Gene3D G3DSA:3.30.70.360 210 380 7.2E-149 T 12-10-2018 AMJ96_CH00154 3bfd5aced2a093d7d3d52bfe828f49b3 462 Pfam PF07687 Peptidase dimerisation domain 202 361 1.1E-24 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain AMJ96_CH00154 3bfd5aced2a093d7d3d52bfe828f49b3 462 SUPERFAMILY SSF53187 5 461 6.29E-64 T 12-10-2018 AMJ96_CH00154 3bfd5aced2a093d7d3d52bfe828f49b3 462 Pfam PF01546 Peptidase family M20/M25/M40 85 458 3.0E-37 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 AMJ96_PC00193 76f8428e58229f14bb4275db57f2ca56 388 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 8 354 8.8E-175 T 12-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 AMJ96_PC00193 76f8428e58229f14bb4275db57f2ca56 388 SUPERFAMILY SSF51679 7 354 4.32E-89 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_PC00193 76f8428e58229f14bb4275db57f2ca56 388 Gene3D G3DSA:3.20.20.30 6 359 9.4E-132 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_PC00193 76f8428e58229f14bb4275db57f2ca56 388 Pfam PF00296 Luciferase-like monooxygenase 8 330 6.5E-79 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMJ96_PC00193 76f8428e58229f14bb4275db57f2ca56 388 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 7 382 71.462 T 12-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 AMJ96_PC00031 2d2bebb416aba200da0d78ae244a5e3e 667 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 66 511 2.7E-135 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00031 2d2bebb416aba200da0d78ae244a5e3e 667 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 12 656 0.0 T 12-10-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 AMJ96_PC00031 2d2bebb416aba200da0d78ae244a5e3e 667 SUPERFAMILY SSF81442 54 570 6.02E-176 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00031 2d2bebb416aba200da0d78ae244a5e3e 667 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 290 344 - T 12-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00031 2d2bebb416aba200da0d78ae244a5e3e 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 358 379 8.6E-92 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00031 2d2bebb416aba200da0d78ae244a5e3e 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 176 188 8.6E-92 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00031 2d2bebb416aba200da0d78ae244a5e3e 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 288 309 8.6E-92 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00031 2d2bebb416aba200da0d78ae244a5e3e 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 208 226 8.6E-92 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00031 2d2bebb416aba200da0d78ae244a5e3e 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 57 82 8.6E-92 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00031 2d2bebb416aba200da0d78ae244a5e3e 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 237 256 8.6E-92 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00031 2d2bebb416aba200da0d78ae244a5e3e 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 421 440 8.6E-92 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00031 2d2bebb416aba200da0d78ae244a5e3e 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 471 492 8.6E-92 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00031 2d2bebb416aba200da0d78ae244a5e3e 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 334 349 8.6E-92 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00031 2d2bebb416aba200da0d78ae244a5e3e 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 107 130 8.6E-92 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00031 2d2bebb416aba200da0d78ae244a5e3e 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 134 158 8.6E-92 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00031 2d2bebb416aba200da0d78ae244a5e3e 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 393 411 8.6E-92 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00031 2d2bebb416aba200da0d78ae244a5e3e 667 Gene3D G3DSA:1.20.210.10 30 575 4.1E-187 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH01453 0e053cd1cc6227548e83f85b7356483f 106 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 4 106 1.9E-31 T 12-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 AMJ96_CH01453 0e053cd1cc6227548e83f85b7356483f 106 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 1 105 23.384 T 12-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 AMJ96_CH01453 0e053cd1cc6227548e83f85b7356483f 106 SUPERFAMILY SSF103481 5 104 3.79E-7 T 12-10-2018 AMJ96_CH00175 8fd1740fad0058fc726c388d7de63300 245 TIGRFAM TIGR02325 C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF 8 245 4.0E-95 T 12-10-2018 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF AMJ96_CH00175 8fd1740fad0058fc726c388d7de63300 245 Gene3D G3DSA:1.10.10.10 2 78 1.1E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00175 8fd1740fad0058fc726c388d7de63300 245 SMART SM00866 100 240 9.0E-26 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMJ96_CH00175 8fd1740fad0058fc726c388d7de63300 245 SUPERFAMILY SSF64288 66 244 1.3E-34 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMJ96_CH00175 8fd1740fad0058fc726c388d7de63300 245 Pfam PF07702 UTRA domain 103 239 1.3E-26 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AMJ96_CH00175 8fd1740fad0058fc726c388d7de63300 245 SUPERFAMILY SSF46785 9 84 9.91E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00175 8fd1740fad0058fc726c388d7de63300 245 Gene3D G3DSA:3.40.1410.10 88 245 4.7E-30 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily AMJ96_CH00175 8fd1740fad0058fc726c388d7de63300 245 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 78 3.2E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH00175 8fd1740fad0058fc726c388d7de63300 245 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 52 68 4.9E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH00175 8fd1740fad0058fc726c388d7de63300 245 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 38 52 4.9E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH00175 8fd1740fad0058fc726c388d7de63300 245 SMART SM00345 19 78 3.6E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00572 9623f3c810a45ccdba51ce06456425db 131 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 35 108 1.5E-20 T 12-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AMJ96_PD00572 9623f3c810a45ccdba51ce06456425db 131 SUPERFAMILY SSF54534 35 108 3.01E-15 T 12-10-2018 AMJ96_PD00572 9623f3c810a45ccdba51ce06456425db 131 PIRSF PIRSF006092 5 111 2.1E-21 T 12-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AMJ96_PD00572 9623f3c810a45ccdba51ce06456425db 131 Gene3D G3DSA:3.10.50.30 31 113 1.1E-22 T 12-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 AMJ96_CH03498 52e058afade3b2f37b60d9f97b7c2e20 1033 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 204 210 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMJ96_CH03498 52e058afade3b2f37b60d9f97b7c2e20 1033 Pfam PF01555 DNA methylase 201 527 3.0E-30 T 12-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 AMJ96_CH03498 52e058afade3b2f37b60d9f97b7c2e20 1033 SUPERFAMILY SSF53335 173 536 1.72E-54 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH03498 52e058afade3b2f37b60d9f97b7c2e20 1033 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 263 282 2.9E-15 T 12-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 AMJ96_CH03498 52e058afade3b2f37b60d9f97b7c2e20 1033 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 474 496 2.9E-15 T 12-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 AMJ96_CH03498 52e058afade3b2f37b60d9f97b7c2e20 1033 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 497 511 2.9E-15 T 12-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 AMJ96_CH03498 52e058afade3b2f37b60d9f97b7c2e20 1033 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 201 213 2.9E-15 T 12-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 AMJ96_PD00166 bc2185f21f210dc4e0d17b9746ade314 268 SUPERFAMILY SSF81301 37 161 1.93E-10 T 12-10-2018 AMJ96_PD00166 bc2185f21f210dc4e0d17b9746ade314 268 Pfam PF14907 Uncharacterised nucleotidyltransferase 63 186 4.6E-9 T 12-10-2018 IPR039498 Uncharacterised nucleotidyltransferase AMJ96_PD00166 bc2185f21f210dc4e0d17b9746ade314 268 Gene3D G3DSA:3.30.460.40 22 170 3.4E-8 T 12-10-2018 AMJ96_PD00611 caf196dda837314a722018a461f4fb0a 297 Gene3D G3DSA:1.10.1040.10 163 290 1.7E-36 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMJ96_PD00611 caf196dda837314a722018a461f4fb0a 297 SUPERFAMILY SSF51735 3 162 1.28E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00611 caf196dda837314a722018a461f4fb0a 297 TIGRFAM TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase 4 288 5.4E-108 T 12-10-2018 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 AMJ96_PD00611 caf196dda837314a722018a461f4fb0a 297 Gene3D G3DSA:3.40.50.720 1 162 9.4E-50 T 12-10-2018 AMJ96_PD00611 caf196dda837314a722018a461f4fb0a 297 SUPERFAMILY SSF48179 162 285 5.78E-36 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_PD00611 caf196dda837314a722018a461f4fb0a 297 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 12-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMJ96_PD00611 caf196dda837314a722018a461f4fb0a 297 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 161 4.0E-46 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMJ96_PD00611 caf196dda837314a722018a461f4fb0a 297 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 281 3.1E-33 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMJ96_PD00611 caf196dda837314a722018a461f4fb0a 297 PIRSF PIRSF000103 1 293 2.1E-78 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMJ96_CH00524 81ee2660696b5268266476ffac6f4504 381 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 47 381 5.2E-107 T 12-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 AMJ96_CH00524 81ee2660696b5268266476ffac6f4504 381 Gene3D G3DSA:3.30.565.10 231 381 9.9E-38 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00524 81ee2660696b5268266476ffac6f4504 381 SMART SM00388 159 226 1.3E-20 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH00524 81ee2660696b5268266476ffac6f4504 381 SUPERFAMILY SSF55874 215 381 4.98E-40 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00524 81ee2660696b5268266476ffac6f4504 381 SUPERFAMILY SSF47384 147 224 4.71E-20 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH00524 81ee2660696b5268266476ffac6f4504 381 Pfam PF00512 His Kinase A (phospho-acceptor) domain 159 224 4.3E-18 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH00524 81ee2660696b5268266476ffac6f4504 381 SUPERFAMILY SSF55785 58 157 1.45E-5 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH00524 81ee2660696b5268266476ffac6f4504 381 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 272 380 3.9E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00524 81ee2660696b5268266476ffac6f4504 381 PRINTS PR00344 Bacterial sensor protein C-terminal signature 369 381 9.3E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00524 81ee2660696b5268266476ffac6f4504 381 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 324 9.3E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00524 81ee2660696b5268266476ffac6f4504 381 PRINTS PR00344 Bacterial sensor protein C-terminal signature 345 363 9.3E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00524 81ee2660696b5268266476ffac6f4504 381 Gene3D G3DSA:1.10.287.130 152 226 2.3E-25 T 12-10-2018 AMJ96_CH00524 81ee2660696b5268266476ffac6f4504 381 SMART SM00387 272 381 7.5E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PD00417 a5d7039ca5dcdc32ef603938d0cdf184 278 SUPERFAMILY SSF161098 11 278 1.31E-68 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00417 a5d7039ca5dcdc32ef603938d0cdf184 278 Gene3D G3DSA:1.10.3720.10 3 269 3.0E-63 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00417 a5d7039ca5dcdc32ef603938d0cdf184 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 268 1.3E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PA00235 b077fcd586a579e236a513785b1029bf 436 Gene3D G3DSA:2.40.37.20 35 435 8.9E-112 T 12-10-2018 AMJ96_PA00235 b077fcd586a579e236a513785b1029bf 436 SMART SM01119 325 422 1.8E-32 T 12-10-2018 IPR026956 D-serine dehydratase-like domain AMJ96_PA00235 b077fcd586a579e236a513785b1029bf 436 Gene3D G3DSA:3.20.20.10 54 294 8.9E-112 T 12-10-2018 IPR029066 PLP-binding barrel AMJ96_PA00235 b077fcd586a579e236a513785b1029bf 436 Pfam PF01168 Alanine racemase, N-terminal domain 52 238 1.2E-13 T 12-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_PA00235 b077fcd586a579e236a513785b1029bf 436 Pfam PF14031 Putative serine dehydratase domain 325 419 9.0E-16 T 12-10-2018 IPR026956 D-serine dehydratase-like domain AMJ96_PA00235 b077fcd586a579e236a513785b1029bf 436 SUPERFAMILY SSF51419 51 267 6.54E-20 T 12-10-2018 IPR029066 PLP-binding barrel AMJ96_CH02358 7367e8673bec9b4cfbb1fb899b8e9d3e 273 Pfam PF01261 Xylose isomerase-like TIM barrel 29 226 2.3E-11 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMJ96_CH02358 7367e8673bec9b4cfbb1fb899b8e9d3e 273 Gene3D G3DSA:3.20.20.150 5 270 3.3E-39 T 12-10-2018 AMJ96_CH02358 7367e8673bec9b4cfbb1fb899b8e9d3e 273 SUPERFAMILY SSF51658 12 270 6.22E-51 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_CH02997 0caf9442ee5b42d773e124ac3987f236 654 SUPERFAMILY SSF158472 218 262 2.35E-5 T 12-10-2018 AMJ96_CH02997 0caf9442ee5b42d773e124ac3987f236 654 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 411 566 1.5E-43 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH02997 0caf9442ee5b42d773e124ac3987f236 654 Gene3D G3DSA:1.10.8.500 217 267 4.3E-10 T 12-10-2018 AMJ96_CH02997 0caf9442ee5b42d773e124ac3987f236 654 SUPERFAMILY SSF58104 318 599 5.49E-65 T 12-10-2018 AMJ96_CH02997 0caf9442ee5b42d773e124ac3987f236 654 SMART SM00283 351 598 3.3E-94 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH02997 0caf9442ee5b42d773e124ac3987f236 654 SMART SM00304 217 270 0.28 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH02997 0caf9442ee5b42d773e124ac3987f236 654 SMART SM00304 298 350 0.0021 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH02997 0caf9442ee5b42d773e124ac3987f236 654 Gene3D G3DSA:1.10.287.950 297 599 2.7E-74 T 12-10-2018 AMJ96_PC00032 a0ddf8df298c919de75877161d6b0d55 369 Pfam PF06481 COX Aromatic Rich Motif 221 266 8.8E-17 T 12-10-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 AMJ96_PC00032 a0ddf8df298c919de75877161d6b0d55 369 Gene3D G3DSA:1.10.287.90 2 86 1.3E-30 T 12-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00032 a0ddf8df298c919de75877161d6b0d55 369 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 132 202 2.5E-7 T 12-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00032 a0ddf8df298c919de75877161d6b0d55 369 SUPERFAMILY SSF49503 104 262 9.49E-50 T 12-10-2018 IPR008972 Cupredoxin AMJ96_PC00032 a0ddf8df298c919de75877161d6b0d55 369 Gene3D G3DSA:2.60.40.420 87 262 3.1E-53 T 12-10-2018 IPR008972 Cupredoxin AMJ96_PC00032 a0ddf8df298c919de75877161d6b0d55 369 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 2 221 1.8E-105 T 12-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 AMJ96_PC00032 a0ddf8df298c919de75877161d6b0d55 369 SUPERFAMILY SSF81464 4 91 2.78E-22 T 12-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00032 a0ddf8df298c919de75877161d6b0d55 369 PIRSF PIRSF000292 1 294 7.2E-123 T 12-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 AMJ96_CH00186 92aff95cec4bdae12e64402c906baf97 319 SUPERFAMILY SSF52283 20 121 8.02E-8 T 12-10-2018 AMJ96_CH00186 92aff95cec4bdae12e64402c906baf97 319 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 107 283 8.3E-41 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMJ96_CH00186 92aff95cec4bdae12e64402c906baf97 319 Gene3D G3DSA:3.40.50.720 23 319 3.1E-103 T 12-10-2018 AMJ96_CH00186 92aff95cec4bdae12e64402c906baf97 319 SUPERFAMILY SSF51735 102 284 1.0E-38 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00186 92aff95cec4bdae12e64402c906baf97 319 Gene3D G3DSA:3.40.50.720 99 289 3.1E-103 T 12-10-2018 AMJ96_CH00112 a2f269706d893881b83294c3b26a2d7d 131 Gene3D G3DSA:3.30.160.250 1 82 2.5E-11 T 12-10-2018 AMJ96_CH00112 a2f269706d893881b83294c3b26a2d7d 131 SUPERFAMILY SSF143100 1 62 4.45E-11 T 12-10-2018 IPR035069 TTHA1013/TTHA0281-like AMJ96_CH00112 a2f269706d893881b83294c3b26a2d7d 131 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 4 124 2.2E-22 T 12-10-2018 IPR031807 HicB-like antitoxin of toxin-antitoxin system AMJ96_CH00112 a2f269706d893881b83294c3b26a2d7d 131 SUPERFAMILY SSF47598 91 129 2.8E-5 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMJ96_CH01885 0172093fd31792cda5f38bd1df131877 115 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 23 103 5.5E-23 T 12-10-2018 IPR003849 Preprotein translocase YajC AMJ96_CH01885 0172093fd31792cda5f38bd1df131877 115 SMART SM01323 21 104 1.1E-37 T 12-10-2018 IPR003849 Preprotein translocase YajC AMJ96_CH01885 0172093fd31792cda5f38bd1df131877 115 PRINTS PR01853 Bacterial YajC preprotein translocase signature 61 79 4.3E-15 T 12-10-2018 IPR003849 Preprotein translocase YajC AMJ96_CH01885 0172093fd31792cda5f38bd1df131877 115 PRINTS PR01853 Bacterial YajC preprotein translocase signature 23 43 4.3E-15 T 12-10-2018 IPR003849 Preprotein translocase YajC AMJ96_CH01885 0172093fd31792cda5f38bd1df131877 115 Pfam PF02699 Preprotein translocase subunit 25 101 3.7E-25 T 12-10-2018 IPR003849 Preprotein translocase YajC AMJ96_PD00125 8d820aeba8ad616f5e79ac05bd9c208d 288 Gene3D G3DSA:2.70.98.10 3 288 2.0E-74 T 12-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AMJ96_PD00125 8d820aeba8ad616f5e79ac05bd9c208d 288 SUPERFAMILY SSF74650 3 287 8.79E-43 T 12-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 AMJ96_PD00125 8d820aeba8ad616f5e79ac05bd9c208d 288 Pfam PF01263 Aldose 1-epimerase 4 167 2.1E-19 T 12-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 AMJ96_CH00292 948a2d377f7ef74e66d0f43000f002e6 303 SUPERFAMILY SSF103481 50 140 2.88E-10 T 12-10-2018 AMJ96_CH00292 948a2d377f7ef74e66d0f43000f002e6 303 Pfam PF00892 EamA-like transporter family 12 137 1.3E-10 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH00292 948a2d377f7ef74e66d0f43000f002e6 303 Pfam PF00892 EamA-like transporter family 148 279 5.1E-25 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH00292 948a2d377f7ef74e66d0f43000f002e6 303 SUPERFAMILY SSF103481 181 281 8.37E-18 T 12-10-2018 AMJ96_CH03376 8ed5d0aac281397653860590967928c6 95 Pfam PF07235 Protein of unknown function (DUF1427) 2 79 4.0E-38 T 12-10-2018 IPR009872 Protein of unknown function DUF1427 AMJ96_CH03376 8ed5d0aac281397653860590967928c6 95 TIGRFAM TIGR03510 XapX: XapX domain 4 49 1.5E-20 T 12-10-2018 IPR020017 XapX domain AMJ96_CH01968 24aada014a1c7cf51aef2c7b977e877b 123 ProDom PD007745 LIPOPROTEIN MEMBRANE PRECURSOR PALMITATE SIGNAL HOMOLOG MG307 MG309 MG338 P02_ORF1300 7 93 0.008 T 12-10-2018 AMJ96_CH01968 24aada014a1c7cf51aef2c7b977e877b 123 Pfam PF09361 Phasin protein 8 102 4.7E-23 T 12-10-2018 IPR018968 Phasin AMJ96_CH02253 9ac2c9939e36b5450571a430f3fa04ec 205 Gene3D G3DSA:2.30.110.10 8 205 3.4E-58 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMJ96_CH02253 9ac2c9939e36b5450571a430f3fa04ec 205 SUPERFAMILY SSF50475 3 195 2.12E-46 T 12-10-2018 AMJ96_CH02253 9ac2c9939e36b5450571a430f3fa04ec 205 Pfam PF01613 Flavin reductase like domain 23 163 4.0E-18 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AMJ96_CH02253 9ac2c9939e36b5450571a430f3fa04ec 205 SMART SM00903 21 172 6.7E-13 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AMJ96_CH02174 10ebe6f31ce710b8d404dc596bf82719 170 SUPERFAMILY SSF52374 1 159 8.45E-36 T 12-10-2018 AMJ96_CH02174 10ebe6f31ce710b8d404dc596bf82719 170 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 57 2.3E-13 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMJ96_CH02174 10ebe6f31ce710b8d404dc596bf82719 170 Gene3D G3DSA:3.40.50.620 1 164 1.5E-49 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH02174 10ebe6f31ce710b8d404dc596bf82719 170 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 20 41 5.5E-25 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMJ96_CH02174 10ebe6f31ce710b8d404dc596bf82719 170 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 117 139 5.5E-25 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMJ96_CH02174 10ebe6f31ce710b8d404dc596bf82719 170 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 90 106 5.5E-25 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMJ96_CH02174 10ebe6f31ce710b8d404dc596bf82719 170 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 2 20 5.5E-25 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMJ96_CH02174 10ebe6f31ce710b8d404dc596bf82719 170 Pfam PF01467 Cytidylyltransferase-like 5 138 5.3E-13 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AMJ96_CH02174 10ebe6f31ce710b8d404dc596bf82719 170 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 4 161 5.5E-54 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMJ96_CH02174 10ebe6f31ce710b8d404dc596bf82719 170 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 2 163 31.887 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AMJ96_CH01363 49daf7761e1651dff88fec94580fab48 413 SUPERFAMILY SSF48452 17 395 1.02E-5 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01363 49daf7761e1651dff88fec94580fab48 413 Gene3D G3DSA:1.25.40.10 349 412 3.0E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01363 49daf7761e1651dff88fec94580fab48 413 Pfam PF04542 Sigma-70 region 2 8 75 3.9E-9 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH01363 49daf7761e1651dff88fec94580fab48 413 Pfam PF08281 Sigma-70, region 4 112 158 2.9E-6 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_CH01363 49daf7761e1651dff88fec94580fab48 413 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 5 161 2.0E-12 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMJ96_CH01363 49daf7761e1651dff88fec94580fab48 413 Gene3D G3DSA:1.10.1740.10 2 71 7.2E-8 T 12-10-2018 AMJ96_CH01363 49daf7761e1651dff88fec94580fab48 413 SUPERFAMILY SSF88946 3 90 1.22E-12 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH01363 49daf7761e1651dff88fec94580fab48 413 Gene3D G3DSA:1.10.10.10 116 164 2.8E-7 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01363 49daf7761e1651dff88fec94580fab48 413 SUPERFAMILY SSF88659 100 162 1.35E-10 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_CH02463 155ac1df795587d6bf48dc3f5f57cf1f 492 Gene3D G3DSA:3.40.50.300 253 487 1.7E-47 T 12-10-2018 AMJ96_CH02463 155ac1df795587d6bf48dc3f5f57cf1f 492 ProSitePatterns PS00211 ABC transporters family signature. 395 409 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02463 155ac1df795587d6bf48dc3f5f57cf1f 492 SUPERFAMILY SSF52540 3 223 2.82E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02463 155ac1df795587d6bf48dc3f5f57cf1f 492 SUPERFAMILY SSF52540 267 480 4.16E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02463 155ac1df795587d6bf48dc3f5f57cf1f 492 SMART SM00382 30 218 1.2E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02463 155ac1df795587d6bf48dc3f5f57cf1f 492 SMART SM00382 279 471 2.4E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02463 155ac1df795587d6bf48dc3f5f57cf1f 492 Pfam PF00005 ABC transporter 21 170 4.7E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02463 155ac1df795587d6bf48dc3f5f57cf1f 492 Pfam PF00005 ABC transporter 271 422 2.9E-23 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02463 155ac1df795587d6bf48dc3f5f57cf1f 492 Gene3D G3DSA:3.40.50.300 2 234 6.3E-56 T 12-10-2018 AMJ96_PD00529 219ac45bfd39014c2d1672eb355fa4eb 371 Pfam PF12902 Ferritin-like 16 246 5.5E-64 T 12-10-2018 AMJ96_PD00529 219ac45bfd39014c2d1672eb355fa4eb 371 SUPERFAMILY SSF47240 11 118 1.55E-5 T 12-10-2018 IPR009078 Ferritin-like superfamily AMJ96_PD00529 219ac45bfd39014c2d1672eb355fa4eb 371 Gene3D G3DSA:1.20.1260.10 3 255 2.2E-60 T 12-10-2018 IPR012347 Ferritin-like AMJ96_CH02765 dde1a865a9daf3cc707ad05be74a1f7a 490 SUPERFAMILY SSF51126 19 362 2.06E-50 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor AMJ96_CH02765 dde1a865a9daf3cc707ad05be74a1f7a 490 SMART SM00710 238 264 460.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH02765 dde1a865a9daf3cc707ad05be74a1f7a 490 SMART SM00710 268 289 150.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH02765 dde1a865a9daf3cc707ad05be74a1f7a 490 SMART SM00710 140 162 0.33 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH02765 dde1a865a9daf3cc707ad05be74a1f7a 490 SMART SM00710 216 237 100.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH02765 dde1a865a9daf3cc707ad05be74a1f7a 490 SMART SM00710 297 319 5000.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH02765 dde1a865a9daf3cc707ad05be74a1f7a 490 SMART SM00710 163 188 200.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH02765 dde1a865a9daf3cc707ad05be74a1f7a 490 SMART SM00710 113 139 1900.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH02765 dde1a865a9daf3cc707ad05be74a1f7a 490 SMART SM00710 90 112 620.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH02765 dde1a865a9daf3cc707ad05be74a1f7a 490 SMART SM00710 189 209 2200.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH02765 dde1a865a9daf3cc707ad05be74a1f7a 490 Pfam PF13229 Right handed beta helix region 165 329 2.5E-11 T 12-10-2018 IPR039448 Right handed beta helix domain AMJ96_CH02765 dde1a865a9daf3cc707ad05be74a1f7a 490 SMART SM00722 43 182 0.17 T 12-10-2018 IPR006633 Carbohydrate-binding/sugar hydrolysis domain AMJ96_CH02765 dde1a865a9daf3cc707ad05be74a1f7a 490 SMART SM00722 193 346 0.39 T 12-10-2018 IPR006633 Carbohydrate-binding/sugar hydrolysis domain AMJ96_CH02765 dde1a865a9daf3cc707ad05be74a1f7a 490 Gene3D G3DSA:2.160.20.10 3 363 9.3E-30 T 12-10-2018 IPR012334 Pectin lyase fold AMJ96_CH01399 5ccf2c6e176d7cc76fe2cc654776ff87 709 Gene3D G3DSA:2.160.20.10 63 175 1.0E-10 T 12-10-2018 IPR012334 Pectin lyase fold AMJ96_CH01399 5ccf2c6e176d7cc76fe2cc654776ff87 709 SUPERFAMILY SSF51126 66 620 1.41E-31 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor AMJ96_CH01399 5ccf2c6e176d7cc76fe2cc654776ff87 709 Pfam PF13229 Right handed beta helix region 564 648 1.3E-6 T 12-10-2018 IPR039448 Right handed beta helix domain AMJ96_CH01399 5ccf2c6e176d7cc76fe2cc654776ff87 709 Pfam PF13229 Right handed beta helix region 376 537 3.1E-15 T 12-10-2018 IPR039448 Right handed beta helix domain AMJ96_CH01399 5ccf2c6e176d7cc76fe2cc654776ff87 709 Gene3D G3DSA:2.160.20.10 489 680 1.7E-10 T 12-10-2018 IPR012334 Pectin lyase fold AMJ96_CH01399 5ccf2c6e176d7cc76fe2cc654776ff87 709 Gene3D G3DSA:2.160.20.10 328 485 3.7E-14 T 12-10-2018 IPR012334 Pectin lyase fold AMJ96_CH01399 5ccf2c6e176d7cc76fe2cc654776ff87 709 SMART SM00710 404 426 0.47 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01399 5ccf2c6e176d7cc76fe2cc654776ff87 709 SMART SM00710 657 703 5200.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01399 5ccf2c6e176d7cc76fe2cc654776ff87 709 SMART SM00710 492 519 870.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01399 5ccf2c6e176d7cc76fe2cc654776ff87 709 SMART SM00710 595 617 170.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01399 5ccf2c6e176d7cc76fe2cc654776ff87 709 SMART SM00710 628 649 3900.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01399 5ccf2c6e176d7cc76fe2cc654776ff87 709 SMART SM00710 462 484 2100.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01399 5ccf2c6e176d7cc76fe2cc654776ff87 709 SMART SM00710 434 461 160.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01399 5ccf2c6e176d7cc76fe2cc654776ff87 709 SMART SM00710 382 403 49.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01399 5ccf2c6e176d7cc76fe2cc654776ff87 709 SMART SM00710 573 594 86.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH01625 4ab3e672c36349f8c228aa63dd7ba987 299 Pfam PF00892 EamA-like transporter family 157 288 2.2E-7 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH01625 4ab3e672c36349f8c228aa63dd7ba987 299 Pfam PF00892 EamA-like transporter family 16 148 6.4E-11 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH01625 4ab3e672c36349f8c228aa63dd7ba987 299 SUPERFAMILY SSF103481 51 151 2.09E-12 T 12-10-2018 AMJ96_CH01625 4ab3e672c36349f8c228aa63dd7ba987 299 SUPERFAMILY SSF103481 204 293 1.44E-8 T 12-10-2018 AMJ96_CH00641 8c78e6c5749d54e0de647a1fa92f26b3 312 PIRSF PIRSF001365 5 306 2.5E-32 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH00641 8c78e6c5749d54e0de647a1fa92f26b3 312 SUPERFAMILY SSF51569 6 302 4.08E-40 T 12-10-2018 AMJ96_CH00641 8c78e6c5749d54e0de647a1fa92f26b3 312 SMART SM01130 9 306 6.1E-22 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH00641 8c78e6c5749d54e0de647a1fa92f26b3 312 Gene3D G3DSA:3.20.20.70 9 308 6.7E-34 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH00641 8c78e6c5749d54e0de647a1fa92f26b3 312 Pfam PF00701 Dihydrodipicolinate synthetase family 14 252 1.6E-13 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PD00454 0b52ece0224b4c71bcc2a57a629ff89d 458 PIRSF PIRSF000521 19 446 4.1E-31 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_PD00454 0b52ece0224b4c71bcc2a57a629ff89d 458 Gene3D G3DSA:3.90.1150.10 10 443 1.8E-151 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_PD00454 0b52ece0224b4c71bcc2a57a629ff89d 458 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 252 289 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_PD00454 0b52ece0224b4c71bcc2a57a629ff89d 458 SUPERFAMILY SSF53383 9 443 1.53E-121 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_PD00454 0b52ece0224b4c71bcc2a57a629ff89d 458 Gene3D G3DSA:3.40.640.10 64 340 1.8E-151 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_PD00454 0b52ece0224b4c71bcc2a57a629ff89d 458 Pfam PF00202 Aminotransferase class-III 27 440 3.5E-91 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_PD00427 712568bc42937ef4ce8a569b5d2d55c5 139 Pfam PF13328 HD domain 7 82 1.1E-6 T 12-10-2018 IPR003607 HD/PDEase domain AMJ96_PD00427 712568bc42937ef4ce8a569b5d2d55c5 139 SUPERFAMILY SSF109604 2 120 8.97E-18 T 12-10-2018 AMJ96_PD00427 712568bc42937ef4ce8a569b5d2d55c5 139 Gene3D G3DSA:1.10.3210.10 1 135 2.9E-16 T 12-10-2018 AMJ96_CH00101 ff45087a0e6a78a530d22ca048b0f8ed 127 TIGRFAM TIGR02300 FYDLN_acid: TIGR02300 family protein 1 123 1.1E-42 T 12-10-2018 IPR012644 Conserved hypothetical protein CHP02300, FYDLN acid AMJ96_CH00101 ff45087a0e6a78a530d22ca048b0f8ed 127 Pfam PF09538 Protein of unknown function (FYDLN_acid) 2 107 1.7E-25 T 12-10-2018 IPR012644 Conserved hypothetical protein CHP02300, FYDLN acid AMJ96_CH03778 16fa241bbb9b0254b50ba8b1153fd0c7 41 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 41 8.3E-6 T 12-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH03778 16fa241bbb9b0254b50ba8b1153fd0c7 41 Pfam PF00444 Ribosomal protein L36 1 41 2.6E-16 T 12-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH03778 16fa241bbb9b0254b50ba8b1153fd0c7 41 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 16.265 T 12-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH03778 16fa241bbb9b0254b50ba8b1153fd0c7 41 SUPERFAMILY SSF57840 1 41 8.11E-13 T 12-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 SUPERFAMILY SSF82866 798 1020 1.26E-43 T 12-10-2018 AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 Pfam PF00873 AcrB/AcrD/AcrF family 13 1014 1.5E-172 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 Gene3D G3DSA:3.30.2090.10 188 277 6.0E-254 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 Gene3D G3DSA:3.30.70.1440 660 859 6.0E-254 T 12-10-2018 AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 Gene3D G3DSA:3.30.70.1320 145 335 6.0E-254 T 12-10-2018 AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 Gene3D G3DSA:1.20.1640.10 514 1011 6.0E-254 T 12-10-2018 AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 SUPERFAMILY SSF82866 305 498 2.62E-37 T 12-10-2018 AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 SUPERFAMILY SSF82714 712 796 2.62E-15 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 SUPERFAMILY SSF82714 194 273 3.14E-10 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 SUPERFAMILY SSF82693 49 145 9.77E-20 T 12-10-2018 AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 Gene3D G3DSA:3.30.70.1430 49 807 6.0E-254 T 12-10-2018 AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 SUPERFAMILY SSF82693 146 331 1.2E-15 T 12-10-2018 AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 PRINTS PR00702 Acriflavin resistance protein family signature 19 43 1.6E-28 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 1.6E-28 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 1.6E-28 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 PRINTS PR00702 Acriflavin resistance protein family signature 446 469 1.6E-28 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 PRINTS PR00702 Acriflavin resistance protein family signature 47 65 1.6E-28 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 1.6E-28 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 PRINTS PR00702 Acriflavin resistance protein family signature 546 563 1.6E-28 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 Gene3D G3DSA:1.20.1640.10 20 513 6.0E-254 T 12-10-2018 AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 Gene3D G3DSA:3.30.2090.10 711 799 6.0E-254 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH03943 8f1effb2813dd25bf4f6497b17ace151 1047 Gene3D G3DSA:3.30.70.1430 561 659 6.0E-254 T 12-10-2018 AMJ96_CH03133 7c52df7ebd451c7c7923b79eac42fbe3 158 PIRSF PIRSF006092 1 157 8.0E-55 T 12-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AMJ96_CH03133 7c52df7ebd451c7c7923b79eac42fbe3 158 Gene3D G3DSA:1.10.287.180 2 76 9.6E-30 T 12-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 AMJ96_CH03133 7c52df7ebd451c7c7923b79eac42fbe3 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 6 155 1.6E-62 T 12-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 AMJ96_CH03133 7c52df7ebd451c7c7923b79eac42fbe3 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 12-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AMJ96_CH03133 7c52df7ebd451c7c7923b79eac42fbe3 158 Pfam PF03449 Transcription elongation factor, N-terminal 5 75 8.5E-30 T 12-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AMJ96_CH03133 7c52df7ebd451c7c7923b79eac42fbe3 158 SUPERFAMILY SSF54534 81 155 7.85E-24 T 12-10-2018 AMJ96_CH03133 7c52df7ebd451c7c7923b79eac42fbe3 158 Gene3D G3DSA:3.10.50.30 77 157 1.8E-30 T 12-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 AMJ96_CH03133 7c52df7ebd451c7c7923b79eac42fbe3 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 82 156 1.8E-29 T 12-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AMJ96_CH03133 7c52df7ebd451c7c7923b79eac42fbe3 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 18 49 - T 12-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AMJ96_CH03133 7c52df7ebd451c7c7923b79eac42fbe3 158 SUPERFAMILY SSF46557 4 77 2.22E-26 T 12-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 AMJ96_CH03133 7c52df7ebd451c7c7923b79eac42fbe3 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 3 156 33.591 T 12-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 AMJ96_CH03475 00fa7d5eb2641b7940d80aca4ce3b996 453 SUPERFAMILY SSF51971 140 380 1.18E-50 T 12-10-2018 AMJ96_CH03475 00fa7d5eb2641b7940d80aca4ce3b996 453 SUPERFAMILY SSF51971 351 442 7.06E-8 T 12-10-2018 AMJ96_CH03475 00fa7d5eb2641b7940d80aca4ce3b996 453 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 20 127 1.1E-35 T 12-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 AMJ96_CH03475 00fa7d5eb2641b7940d80aca4ce3b996 453 SUPERFAMILY SSF46548 8 151 3.5E-33 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMJ96_CH03475 00fa7d5eb2641b7940d80aca4ce3b996 453 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 141 431 2.0E-29 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_CH03475 00fa7d5eb2641b7940d80aca4ce3b996 453 Gene3D G3DSA:1.10.1060.10 7 138 2.3E-39 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMJ96_CH03475 00fa7d5eb2641b7940d80aca4ce3b996 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 395 417 2.3E-18 T 12-10-2018 AMJ96_CH03475 00fa7d5eb2641b7940d80aca4ce3b996 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 276 294 2.3E-18 T 12-10-2018 AMJ96_CH03475 00fa7d5eb2641b7940d80aca4ce3b996 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 162 2.3E-18 T 12-10-2018 AMJ96_CH03475 00fa7d5eb2641b7940d80aca4ce3b996 453 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 371 387 2.3E-18 T 12-10-2018 AMJ96_CH03475 00fa7d5eb2641b7940d80aca4ce3b996 453 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 142 164 2.8E-9 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_CH03475 00fa7d5eb2641b7940d80aca4ce3b996 453 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 405 423 2.8E-9 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_CH03475 00fa7d5eb2641b7940d80aca4ce3b996 453 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 272 296 2.8E-9 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_CH03475 00fa7d5eb2641b7940d80aca4ce3b996 453 Gene3D G3DSA:3.50.50.60 272 452 1.0E-19 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03475 00fa7d5eb2641b7940d80aca4ce3b996 453 Gene3D G3DSA:3.50.50.60 139 259 3.9E-26 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH00438 2f8091c0258721186f3684b89206a888 286 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 8 74 2.3E-24 T 12-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 AMJ96_CH00438 2f8091c0258721186f3684b89206a888 286 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 9 285 1.1E-122 T 12-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 AMJ96_CH00438 2f8091c0258721186f3684b89206a888 286 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 139 173 1.4E-4 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH00438 2f8091c0258721186f3684b89206a888 286 SUPERFAMILY SSF51161 8 270 1.66E-69 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily AMJ96_CH00438 2f8091c0258721186f3684b89206a888 286 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 6 286 55.67 T 12-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 AMJ96_CH00438 2f8091c0258721186f3684b89206a888 286 Gene3D G3DSA:2.160.10.10 94 271 1.4E-55 T 12-10-2018 AMJ96_CH00438 2f8091c0258721186f3684b89206a888 286 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 141 169 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMJ96_CH00438 2f8091c0258721186f3684b89206a888 286 Gene3D G3DSA:1.10.166.10 6 75 4.1E-28 T 12-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 AMJ96_CH00438 2f8091c0258721186f3684b89206a888 286 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 182 217 1.1E-11 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH01290 e153ed7367a1d2f28f8240a0bdad73d4 137 SUPERFAMILY SSF51316 11 136 1.62E-60 T 12-10-2018 IPR011057 Mss4-like superfamily AMJ96_CH01290 e153ed7367a1d2f28f8240a0bdad73d4 137 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 12 135 1.1E-56 T 12-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 AMJ96_CH01290 e153ed7367a1d2f28f8240a0bdad73d4 137 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 13 136 38.414 T 12-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 AMJ96_CH01290 e153ed7367a1d2f28f8240a0bdad73d4 137 Pfam PF01641 SelR domain 16 135 4.1E-54 T 12-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 AMJ96_CH01290 e153ed7367a1d2f28f8240a0bdad73d4 137 Gene3D G3DSA:2.170.150.20 1 137 2.2E-62 T 12-10-2018 AMJ96_PD00235 9ced054f9e4f00f124df5875ef08e7e3 256 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 27 144 6.1E-22 T 12-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 AMJ96_PD00235 9ced054f9e4f00f124df5875ef08e7e3 256 SUPERFAMILY SSF51695 22 246 4.19E-48 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMJ96_PD00235 9ced054f9e4f00f124df5875ef08e7e3 256 Gene3D G3DSA:3.20.20.190 17 247 2.8E-46 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMJ96_CH00426 05c20fa7ec7bb11e4465e291999480fc 154 Gene3D G3DSA:3.40.930.10 1 153 5.8E-51 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AMJ96_CH00426 05c20fa7ec7bb11e4465e291999480fc 154 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 3 147 1.4E-51 T 12-10-2018 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 AMJ96_CH00426 05c20fa7ec7bb11e4465e291999480fc 154 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 147 1.2E-34 T 12-10-2018 IPR002178 PTS EIIA type-2 domain AMJ96_CH00426 05c20fa7ec7bb11e4465e291999480fc 154 SUPERFAMILY SSF55804 1 147 4.45E-43 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AMJ96_CH00426 05c20fa7ec7bb11e4465e291999480fc 154 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 51 67 - T 12-10-2018 IPR002178 PTS EIIA type-2 domain AMJ96_CH02851 3b12c941a3005ff393797aa463f4a68b 300 SUPERFAMILY SSF53850 89 293 4.52E-41 T 12-10-2018 AMJ96_CH02851 3b12c941a3005ff393797aa463f4a68b 300 Gene3D G3DSA:3.40.190.10 92 288 6.2E-58 T 12-10-2018 AMJ96_CH02851 3b12c941a3005ff393797aa463f4a68b 300 Pfam PF03466 LysR substrate binding domain 89 291 1.6E-39 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH02851 3b12c941a3005ff393797aa463f4a68b 300 Gene3D G3DSA:1.10.10.10 2 90 1.6E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02851 3b12c941a3005ff393797aa463f4a68b 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 8.8E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02851 3b12c941a3005ff393797aa463f4a68b 300 Gene3D G3DSA:3.40.190.10 163 264 6.2E-58 T 12-10-2018 AMJ96_CH02851 3b12c941a3005ff393797aa463f4a68b 300 SUPERFAMILY SSF46785 3 87 3.27E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PA00107 507818d59b0e8124328d06abbd75550d 440 Pfam PF13416 Bacterial extracellular solute-binding protein 44 362 1.5E-35 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PA00107 507818d59b0e8124328d06abbd75550d 440 Gene3D G3DSA:3.40.190.10 29 387 4.5E-127 T 12-10-2018 AMJ96_PA00107 507818d59b0e8124328d06abbd75550d 440 SUPERFAMILY SSF53850 25 428 5.43E-67 T 12-10-2018 AMJ96_PA00107 507818d59b0e8124328d06abbd75550d 440 Gene3D G3DSA:3.40.190.10 145 427 4.5E-127 T 12-10-2018 AMJ96_CH00130 87ed3673d7de52da7cc9146025774a0d 621 SUPERFAMILY SSF48019 263 388 2.21E-28 T 12-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AMJ96_CH00130 87ed3673d7de52da7cc9146025774a0d 621 Pfam PF12362 DNA polymerase III gamma and tau subunits C terminal 475 587 1.8E-38 T 12-10-2018 IPR022107 DNA polymerase III, subunit gamma/ tau, C-terminal AMJ96_CH00130 87ed3673d7de52da7cc9146025774a0d 621 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 18 378 2.2E-122 T 12-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 AMJ96_CH00130 87ed3673d7de52da7cc9146025774a0d 621 Gene3D G3DSA:3.40.50.300 28 197 1.8E-98 T 12-10-2018 AMJ96_CH00130 87ed3673d7de52da7cc9146025774a0d 621 Gene3D G3DSA:1.10.8.60 23 259 1.8E-98 T 12-10-2018 AMJ96_CH00130 87ed3673d7de52da7cc9146025774a0d 621 Gene3D G3DSA:1.20.272.10 262 382 9.8E-10 T 12-10-2018 AMJ96_CH00130 87ed3673d7de52da7cc9146025774a0d 621 SMART SM00382 53 199 1.7E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00130 87ed3673d7de52da7cc9146025774a0d 621 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 252 394 7.1E-51 T 12-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 AMJ96_CH00130 87ed3673d7de52da7cc9146025774a0d 621 SUPERFAMILY SSF52540 48 242 3.53E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00130 87ed3673d7de52da7cc9146025774a0d 621 Pfam PF13177 DNA polymerase III, delta subunit 36 198 4.0E-34 T 12-10-2018 AMJ96_CH02232 4dfaa41c0ae91925481234aa436f8040 338 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 9 332 6.5E-116 T 12-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 AMJ96_CH02232 4dfaa41c0ae91925481234aa436f8040 338 SUPERFAMILY SSF52418 76 336 2.22E-88 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMJ96_CH02232 4dfaa41c0ae91925481234aa436f8040 338 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 6 336 37.179 T 12-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 AMJ96_CH02232 4dfaa41c0ae91925481234aa436f8040 338 Pfam PF00591 Glycosyl transferase family, a/b domain 75 323 4.2E-92 T 12-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMJ96_CH02232 4dfaa41c0ae91925481234aa436f8040 338 SUPERFAMILY SSF47648 5 70 3.79E-19 T 12-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMJ96_CH02232 4dfaa41c0ae91925481234aa436f8040 338 Gene3D G3DSA:1.20.970.10 7 70 2.0E-24 T 12-10-2018 AMJ96_CH02232 4dfaa41c0ae91925481234aa436f8040 338 Pfam PF02885 Glycosyl transferase family, helical bundle domain 6 66 9.3E-20 T 12-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMJ96_CH02232 4dfaa41c0ae91925481234aa436f8040 338 Gene3D G3DSA:3.40.1030.10 72 337 1.2E-97 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMJ96_CH03239 ab02ef63d53db4f6528dc8f85b195e21 376 Pfam PF10095 Uncharacterized protein conserved in bacteria (DUF2333) 129 272 1.1E-11 T 12-10-2018 IPR016936 Uncharacterised conserved protein UCP029693 AMJ96_CH03239 ab02ef63d53db4f6528dc8f85b195e21 376 Pfam PF10095 Uncharacterized protein conserved in bacteria (DUF2333) 281 375 4.5E-8 T 12-10-2018 IPR016936 Uncharacterised conserved protein UCP029693 AMJ96_PB00151 4fa1dba17e15ce91c93db1cd5a1b73b0 115 Pfam PF05717 IS66 Orf2 like protein 9 106 4.2E-37 T 12-10-2018 IPR008878 Transposase IS66, Orf2 AMJ96_PB00077 4fa1dba17e15ce91c93db1cd5a1b73b0 115 Pfam PF05717 IS66 Orf2 like protein 9 106 4.2E-37 T 12-10-2018 IPR008878 Transposase IS66, Orf2 AMJ96_PD00632 4fa1dba17e15ce91c93db1cd5a1b73b0 115 Pfam PF05717 IS66 Orf2 like protein 9 106 4.2E-37 T 12-10-2018 IPR008878 Transposase IS66, Orf2 AMJ96_CH02666 4fa1dba17e15ce91c93db1cd5a1b73b0 115 Pfam PF05717 IS66 Orf2 like protein 9 106 4.2E-37 T 12-10-2018 IPR008878 Transposase IS66, Orf2 AMJ96_CH03281 ce8b0cae0e80d8ea4cf6e701ec14752e 298 Gene3D G3DSA:3.40.190.10 163 262 1.1E-54 T 12-10-2018 AMJ96_CH03281 ce8b0cae0e80d8ea4cf6e701ec14752e 298 Gene3D G3DSA:1.10.10.10 7 96 2.1E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03281 ce8b0cae0e80d8ea4cf6e701ec14752e 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 1.8E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03281 ce8b0cae0e80d8ea4cf6e701ec14752e 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 1.8E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03281 ce8b0cae0e80d8ea4cf6e701ec14752e 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 1.8E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03281 ce8b0cae0e80d8ea4cf6e701ec14752e 298 Pfam PF03466 LysR substrate binding domain 90 293 1.2E-32 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH03281 ce8b0cae0e80d8ea4cf6e701ec14752e 298 Gene3D G3DSA:3.40.190.10 103 289 1.1E-54 T 12-10-2018 AMJ96_CH03281 ce8b0cae0e80d8ea4cf6e701ec14752e 298 SUPERFAMILY SSF46785 7 114 7.03E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03281 ce8b0cae0e80d8ea4cf6e701ec14752e 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 1.8E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03281 ce8b0cae0e80d8ea4cf6e701ec14752e 298 SUPERFAMILY SSF53850 91 295 2.35E-36 T 12-10-2018 AMJ96_CH00034 95f46e4c820b5ddefe89837e355bb804 149 Pfam PF07475 HPr Serine kinase C-terminal domain 3 84 1.5E-10 T 12-10-2018 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 AMJ96_CH00034 95f46e4c820b5ddefe89837e355bb804 149 SUPERFAMILY SSF53795 7 141 2.44E-11 T 12-10-2018 AMJ96_CH00034 95f46e4c820b5ddefe89837e355bb804 149 Gene3D G3DSA:3.40.50.300 1 142 1.3E-23 T 12-10-2018 AMJ96_CH03915 831e125da760c6d7c8e867f13cd11d3b 320 Gene3D G3DSA:1.10.3720.10 31 316 3.9E-43 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03915 831e125da760c6d7c8e867f13cd11d3b 320 SUPERFAMILY SSF161098 35 313 2.34E-45 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03915 831e125da760c6d7c8e867f13cd11d3b 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 313 1.7E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00564 89d1228a6b9ea9dd81717d7493099c16 412 SMART SM00387 311 404 8.6E-8 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PD00564 89d1228a6b9ea9dd81717d7493099c16 412 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 313 362 2.3E-5 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PD00564 89d1228a6b9ea9dd81717d7493099c16 412 SUPERFAMILY SSF55874 308 402 5.5E-15 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PD00564 89d1228a6b9ea9dd81717d7493099c16 412 Pfam PF07730 Histidine kinase 206 268 8.3E-5 T 12-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AMJ96_PD00564 89d1228a6b9ea9dd81717d7493099c16 412 SUPERFAMILY SSF55781 10 162 2.01E-10 T 12-10-2018 AMJ96_PD00564 89d1228a6b9ea9dd81717d7493099c16 412 Gene3D G3DSA:3.30.565.10 271 403 1.7E-23 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PD00564 89d1228a6b9ea9dd81717d7493099c16 412 SMART SM00065 25 179 0.0013 T 12-10-2018 IPR003018 GAF domain GO:0005515 AMJ96_PD00564 89d1228a6b9ea9dd81717d7493099c16 412 Gene3D G3DSA:3.30.450.40 11 180 6.4E-14 T 12-10-2018 IPR029016 GAF-like domain superfamily AMJ96_CH02188 cc72cc66e6fe23d51334ebf5487cdc9b 246 Gene3D G3DSA:3.40.50.2300 2 128 4.9E-30 T 12-10-2018 AMJ96_CH02188 cc72cc66e6fe23d51334ebf5487cdc9b 246 SUPERFAMILY SSF52172 4 128 2.42E-33 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH02188 cc72cc66e6fe23d51334ebf5487cdc9b 246 SMART SM00862 161 237 3.0E-20 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH02188 cc72cc66e6fe23d51334ebf5487cdc9b 246 SUPERFAMILY SSF46894 138 238 2.64E-22 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH02188 cc72cc66e6fe23d51334ebf5487cdc9b 246 SMART SM00448 6 116 5.6E-31 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02188 cc72cc66e6fe23d51334ebf5487cdc9b 246 Pfam PF00486 Transcriptional regulatory protein, C terminal 164 237 4.2E-21 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH02188 cc72cc66e6fe23d51334ebf5487cdc9b 246 Pfam PF00072 Response regulator receiver domain 8 117 1.3E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02188 cc72cc66e6fe23d51334ebf5487cdc9b 246 Gene3D G3DSA:1.10.10.10 129 241 1.1E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01608 f3aa5bd04c668e22070092644199a880 427 Gene3D G3DSA:3.40.640.10 5 289 5.5E-96 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH01608 f3aa5bd04c668e22070092644199a880 427 Gene3D G3DSA:3.90.1150.10 293 427 2.5E-50 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH01608 f3aa5bd04c668e22070092644199a880 427 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 201 215 - T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMJ96_CH01608 f3aa5bd04c668e22070092644199a880 427 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 8 424 2.8E-186 T 12-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 AMJ96_CH01608 f3aa5bd04c668e22070092644199a880 427 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 10 424 2.9E-135 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMJ96_CH01608 f3aa5bd04c668e22070092644199a880 427 SUPERFAMILY SSF53383 7 424 4.39E-124 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH01608 f3aa5bd04c668e22070092644199a880 427 PIRSF PIRSF001434 1 427 3.3E-122 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMJ96_PD00175 12f7fc9b9d034302720627870718bb6d 376 SUPERFAMILY SSF53756 5 358 2.51E-16 T 12-10-2018 AMJ96_PD00175 12f7fc9b9d034302720627870718bb6d 376 Gene3D G3DSA:3.40.50.2000 171 344 1.4E-11 T 12-10-2018 AMJ96_PD00175 12f7fc9b9d034302720627870718bb6d 376 Pfam PF13524 Glycosyl transferases group 1 272 354 5.1E-19 T 12-10-2018 AMJ96_PD00175 12f7fc9b9d034302720627870718bb6d 376 Gene3D G3DSA:3.40.50.2000 20 353 1.4E-11 T 12-10-2018 AMJ96_CH01094 de854884e8736baebe946d61394fabf7 227 SMART SM00014 63 175 2.3E-11 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMJ96_CH01094 de854884e8736baebe946d61394fabf7 227 Pfam PF01569 PAP2 superfamily 105 177 1.9E-16 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMJ96_CH01094 de854884e8736baebe946d61394fabf7 227 Gene3D G3DSA:1.20.144.10 100 192 3.5E-16 T 12-10-2018 AMJ96_CH01094 de854884e8736baebe946d61394fabf7 227 SUPERFAMILY SSF48317 12 180 2.88E-22 T 12-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily AMJ96_CH01389 234cc8b008a31ec99d1609c8b9480271 371 SUPERFAMILY SSF55347 135 317 2.78E-28 T 12-10-2018 AMJ96_CH01389 234cc8b008a31ec99d1609c8b9480271 371 SUPERFAMILY SSF51735 2 160 3.32E-47 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01389 234cc8b008a31ec99d1609c8b9480271 371 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 143 210 3.2E-5 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AMJ96_CH01389 234cc8b008a31ec99d1609c8b9480271 371 Gene3D G3DSA:3.30.360.10 129 370 4.3E-64 T 12-10-2018 AMJ96_CH01389 234cc8b008a31ec99d1609c8b9480271 371 Gene3D G3DSA:3.40.50.720 2 128 1.3E-40 T 12-10-2018 AMJ96_CH01389 234cc8b008a31ec99d1609c8b9480271 371 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 130 5.0E-28 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_CH03440 c6547a5b28d8a4e6e3f7bab6e1c185ff 259 SUPERFAMILY SSF56300 33 240 3.95E-40 T 12-10-2018 AMJ96_CH03440 c6547a5b28d8a4e6e3f7bab6e1c185ff 259 Gene3D G3DSA:3.60.21.10 30 257 2.1E-50 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like AMJ96_CH03440 c6547a5b28d8a4e6e3f7bab6e1c185ff 259 Pfam PF00149 Calcineurin-like phosphoesterase 34 233 3.4E-15 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMJ96_CH03067 004828f0776a8d6a284463cc868dc541 279 SUPERFAMILY SSF161098 7 279 1.59E-59 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03067 004828f0776a8d6a284463cc868dc541 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 273 1.7E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03067 004828f0776a8d6a284463cc868dc541 279 Gene3D G3DSA:1.10.3720.10 2 271 2.8E-51 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02658 1dfda7301134178a4f95f8d60dbf64f7 462 Gene3D G3DSA:1.10.150.20 134 183 4.1E-10 T 12-10-2018 AMJ96_CH02658 1dfda7301134178a4f95f8d60dbf64f7 462 Gene3D G3DSA:3.30.70.270 34 133 4.1E-10 T 12-10-2018 AMJ96_CH02658 1dfda7301134178a4f95f8d60dbf64f7 462 SUPERFAMILY SSF56672 1 192 7.56E-33 T 12-10-2018 AMJ96_CH02658 1dfda7301134178a4f95f8d60dbf64f7 462 Gene3D G3DSA:2.30.40.20 1 33 4.1E-10 T 12-10-2018 AMJ96_CH02658 1dfda7301134178a4f95f8d60dbf64f7 462 Pfam PF00817 impB/mucB/samB family 1 109 1.2E-5 T 12-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMJ96_CH00006 cefe96fddc4b0300e893c18ec47825da 160 Pfam PF02556 Preprotein translocase subunit SecB 10 148 1.0E-54 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMJ96_CH00006 cefe96fddc4b0300e893c18ec47825da 160 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 78 98 3.9E-26 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMJ96_CH00006 cefe96fddc4b0300e893c18ec47825da 160 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 102 124 3.9E-26 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMJ96_CH00006 cefe96fddc4b0300e893c18ec47825da 160 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 128 146 3.9E-26 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMJ96_CH00006 cefe96fddc4b0300e893c18ec47825da 160 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 17 34 3.9E-26 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMJ96_CH00006 cefe96fddc4b0300e893c18ec47825da 160 Hamap MF_00821 Protein-export protein SecB [secB]. 1 150 31.999 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMJ96_CH00006 cefe96fddc4b0300e893c18ec47825da 160 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 11 147 1.1E-41 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AMJ96_CH00006 cefe96fddc4b0300e893c18ec47825da 160 Gene3D G3DSA:3.10.420.10 1 158 7.4E-58 T 12-10-2018 IPR035958 SecB-like superfamily AMJ96_CH00006 cefe96fddc4b0300e893c18ec47825da 160 SUPERFAMILY SSF54611 4 146 3.05E-51 T 12-10-2018 IPR035958 SecB-like superfamily AMJ96_PC00185 2b1e9407ef54b718ec0b44ddacccbad8 167 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 32 162 2.5E-24 T 12-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like AMJ96_PC00185 2b1e9407ef54b718ec0b44ddacccbad8 167 Gene3D G3DSA:3.30.530.20 7 165 2.3E-38 T 12-10-2018 IPR023393 START-like domain superfamily AMJ96_PC00185 2b1e9407ef54b718ec0b44ddacccbad8 167 SUPERFAMILY SSF55961 21 164 2.01E-37 T 12-10-2018 AMJ96_CH02031 8ca678666d1b479cdd87c4a6b96ed3f3 329 Pfam PF00248 Aldo/keto reductase family 17 318 3.1E-69 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_CH02031 8ca678666d1b479cdd87c4a6b96ed3f3 329 Gene3D G3DSA:3.20.20.100 1 325 9.9E-124 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH02031 8ca678666d1b479cdd87c4a6b96ed3f3 329 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 110 120 1.6E-17 T 12-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 AMJ96_CH02031 8ca678666d1b479cdd87c4a6b96ed3f3 329 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 260 272 1.6E-17 T 12-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 AMJ96_CH02031 8ca678666d1b479cdd87c4a6b96ed3f3 329 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 161 180 1.6E-17 T 12-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 AMJ96_CH02031 8ca678666d1b479cdd87c4a6b96ed3f3 329 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 206 212 1.6E-17 T 12-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 AMJ96_CH02031 8ca678666d1b479cdd87c4a6b96ed3f3 329 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 234 246 1.6E-17 T 12-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 AMJ96_CH02031 8ca678666d1b479cdd87c4a6b96ed3f3 329 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 273 286 1.6E-17 T 12-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 AMJ96_CH02031 8ca678666d1b479cdd87c4a6b96ed3f3 329 SUPERFAMILY SSF51430 1 321 1.44E-98 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH00057 280aa05dc5ca39fd92d6202badf5c2c9 442 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 330 432 1.6E-14 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00057 280aa05dc5ca39fd92d6202badf5c2c9 442 SUPERFAMILY SSF47384 207 279 2.55E-8 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH00057 280aa05dc5ca39fd92d6202badf5c2c9 442 SMART SM00388 218 284 6.1E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH00057 280aa05dc5ca39fd92d6202badf5c2c9 442 SMART SM00387 324 435 6.2E-20 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00057 280aa05dc5ca39fd92d6202badf5c2c9 442 Pfam PF00512 His Kinase A (phospho-acceptor) domain 220 283 3.1E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH00057 280aa05dc5ca39fd92d6202badf5c2c9 442 Gene3D G3DSA:3.30.565.10 285 438 4.0E-23 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00057 280aa05dc5ca39fd92d6202badf5c2c9 442 SUPERFAMILY SSF55874 283 434 4.58E-24 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00057 280aa05dc5ca39fd92d6202badf5c2c9 442 Gene3D G3DSA:1.10.287.130 203 281 6.0E-11 T 12-10-2018 AMJ96_CH00057 280aa05dc5ca39fd92d6202badf5c2c9 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 411 1.1E-5 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00057 280aa05dc5ca39fd92d6202badf5c2c9 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 359 373 1.1E-5 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03649 91236bb32d6a82e3278a79557ed05346 347 Gene3D G3DSA:3.40.50.2300 61 302 7.8E-59 T 12-10-2018 AMJ96_CH03649 91236bb32d6a82e3278a79557ed05346 347 Pfam PF13377 Periplasmic binding protein-like domain 169 331 7.5E-26 T 12-10-2018 AMJ96_CH03649 91236bb32d6a82e3278a79557ed05346 347 SUPERFAMILY SSF53822 68 334 5.97E-50 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH03649 91236bb32d6a82e3278a79557ed05346 347 SMART SM00354 7 77 2.1E-17 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03649 91236bb32d6a82e3278a79557ed05346 347 Gene3D G3DSA:1.10.260.40 1 60 4.0E-17 T 12-10-2018 AMJ96_CH03649 91236bb32d6a82e3278a79557ed05346 347 Pfam PF00356 Bacterial regulatory proteins, lacI family 13 54 1.8E-9 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03649 91236bb32d6a82e3278a79557ed05346 347 SUPERFAMILY SSF47413 9 65 2.06E-13 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH03649 91236bb32d6a82e3278a79557ed05346 347 Gene3D G3DSA:3.40.50.2300 159 286 7.8E-59 T 12-10-2018 AMJ96_CH03140 c0651dab3fba96774075cffc825ba19c 303 Pfam PF03466 LysR substrate binding domain 94 297 6.3E-38 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH03140 c0651dab3fba96774075cffc825ba19c 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 4.5E-23 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03140 c0651dab3fba96774075cffc825ba19c 303 SUPERFAMILY SSF46785 3 117 6.02E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03140 c0651dab3fba96774075cffc825ba19c 303 Gene3D G3DSA:1.10.10.10 8 97 8.2E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03140 c0651dab3fba96774075cffc825ba19c 303 SUPERFAMILY SSF53850 93 301 7.24E-42 T 12-10-2018 AMJ96_CH03140 c0651dab3fba96774075cffc825ba19c 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 7.1E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03140 c0651dab3fba96774075cffc825ba19c 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 7.1E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03140 c0651dab3fba96774075cffc825ba19c 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 7.1E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03140 c0651dab3fba96774075cffc825ba19c 303 Gene3D G3DSA:3.40.190.290 98 298 1.6E-48 T 12-10-2018 AMJ96_PD00299 09bb2bcda98a7e854c46c96ced44b628 337 SMART SM00354 1 70 5.8E-11 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00299 09bb2bcda98a7e854c46c96ced44b628 337 SUPERFAMILY SSF47413 2 57 2.25E-12 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PD00299 09bb2bcda98a7e854c46c96ced44b628 337 Pfam PF13377 Periplasmic binding protein-like domain 169 333 7.6E-31 T 12-10-2018 AMJ96_PD00299 09bb2bcda98a7e854c46c96ced44b628 337 Gene3D G3DSA:3.40.50.2300 161 293 5.3E-68 T 12-10-2018 AMJ96_PD00299 09bb2bcda98a7e854c46c96ced44b628 337 Gene3D G3DSA:3.40.50.2300 73 314 5.3E-68 T 12-10-2018 AMJ96_PD00299 09bb2bcda98a7e854c46c96ced44b628 337 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 47 5.5E-8 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00299 09bb2bcda98a7e854c46c96ced44b628 337 Gene3D G3DSA:1.10.260.40 1 57 1.8E-14 T 12-10-2018 AMJ96_PD00299 09bb2bcda98a7e854c46c96ced44b628 337 SUPERFAMILY SSF53822 61 336 1.77E-56 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH02283 c30bd2725120b15bb5738e6637d16e69 239 Gene3D G3DSA:3.30.930.10 21 232 7.5E-62 T 12-10-2018 AMJ96_CH02283 c30bd2725120b15bb5738e6637d16e69 239 Hamap MF_00013 Octanoyltransferase [lipB]. 21 235 35.429 T 12-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMJ96_CH02283 c30bd2725120b15bb5738e6637d16e69 239 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 92 133 7.0E-15 T 12-10-2018 AMJ96_CH02283 c30bd2725120b15bb5738e6637d16e69 239 SUPERFAMILY SSF55681 24 234 6.05E-64 T 12-10-2018 AMJ96_CH02283 c30bd2725120b15bb5738e6637d16e69 239 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 87 102 - T 12-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AMJ96_CH02283 c30bd2725120b15bb5738e6637d16e69 239 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 53 231 6.4E-46 T 12-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMJ96_CH02283 c30bd2725120b15bb5738e6637d16e69 239 PIRSF PIRSF016262 18 238 6.2E-54 T 12-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMJ96_CH02283 c30bd2725120b15bb5738e6637d16e69 239 Pfam PF03099 Biotin/lipoate A/B protein ligase family 82 188 7.0E-7 T 12-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AMJ96_PA00002 8e0d80333908a8591aa78a3a09a0b3a5 93 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 6 73 1.6E-15 T 12-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM AMJ96_PA00002 8e0d80333908a8591aa78a3a09a0b3a5 93 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 9 60 1.6E-6 T 12-10-2018 AMJ96_PA00002 8e0d80333908a8591aa78a3a09a0b3a5 93 SUPERFAMILY SSF143120 6 78 6.41E-15 T 12-10-2018 IPR036165 YefM-like superfamily AMJ96_PC00141 dcc03d3b6dbc42de3b9e45a8435a7d40 653 Pfam PF14326 Domain of unknown function (DUF4384) 52 131 4.3E-21 T 12-10-2018 IPR025493 Domain of unknown function DUF4384 AMJ96_PC00141 dcc03d3b6dbc42de3b9e45a8435a7d40 653 Gene3D G3DSA:3.30.1330.60 535 653 1.6E-28 T 12-10-2018 IPR036737 OmpA-like domain superfamily AMJ96_PC00141 dcc03d3b6dbc42de3b9e45a8435a7d40 653 SUPERFAMILY SSF103088 540 650 5.36E-24 T 12-10-2018 IPR036737 OmpA-like domain superfamily AMJ96_PC00141 dcc03d3b6dbc42de3b9e45a8435a7d40 653 PRINTS PR01021 OMPA domain signature 578 593 1.4E-13 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMJ96_PC00141 dcc03d3b6dbc42de3b9e45a8435a7d40 653 PRINTS PR01021 OMPA domain signature 593 609 1.4E-13 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMJ96_PC00141 dcc03d3b6dbc42de3b9e45a8435a7d40 653 PRINTS PR01021 OMPA domain signature 548 570 1.4E-13 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMJ96_PC00141 dcc03d3b6dbc42de3b9e45a8435a7d40 653 Pfam PF00691 OmpA family 547 634 3.3E-17 T 12-10-2018 IPR006665 OmpA-like domain AMJ96_CH01526 134cb983bffcf3b2992db4cd8698aa1e 198 Gene3D G3DSA:3.40.30.10 1 81 4.7E-18 T 12-10-2018 AMJ96_CH01526 134cb983bffcf3b2992db4cd8698aa1e 198 SUPERFAMILY SSF52833 1 82 2.2E-16 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH01526 134cb983bffcf3b2992db4cd8698aa1e 198 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 75 2.5E-14 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMJ96_CH01526 134cb983bffcf3b2992db4cd8698aa1e 198 Gene3D G3DSA:1.20.1050.10 82 187 2.1E-30 T 12-10-2018 AMJ96_PD00316 6cb8cfb2379ec97c51798a083a698581 125 SMART SM00448 6 114 2.8E-19 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00316 6cb8cfb2379ec97c51798a083a698581 125 SUPERFAMILY SSF52172 8 120 2.56E-25 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PD00316 6cb8cfb2379ec97c51798a083a698581 125 Pfam PF00072 Response regulator receiver domain 8 114 1.3E-19 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00316 6cb8cfb2379ec97c51798a083a698581 125 Gene3D G3DSA:3.40.50.2300 3 124 6.3E-27 T 12-10-2018 AMJ96_CH00577 a475d379da2de3666998b6023849ec78 738 Gene3D G3DSA:3.40.50.720 327 510 2.5E-59 T 12-10-2018 AMJ96_CH00577 a475d379da2de3666998b6023849ec78 738 SUPERFAMILY SSF48179 638 725 1.28E-20 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_CH00577 a475d379da2de3666998b6023849ec78 738 Gene3D G3DSA:3.90.226.10 1 326 1.8E-94 T 12-10-2018 AMJ96_CH00577 a475d379da2de3666998b6023849ec78 738 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 329 508 4.4E-56 T 12-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMJ96_CH00577 a475d379da2de3666998b6023849ec78 738 SUPERFAMILY SSF52096 1 318 2.8E-67 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_CH00577 a475d379da2de3666998b6023849ec78 738 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 214 1.9E-28 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMJ96_CH00577 a475d379da2de3666998b6023849ec78 738 SUPERFAMILY SSF48179 509 620 3.49E-23 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_CH00577 a475d379da2de3666998b6023849ec78 738 SUPERFAMILY SSF51735 326 508 7.52E-53 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00577 a475d379da2de3666998b6023849ec78 738 Gene3D G3DSA:1.10.1040.50 511 720 2.6E-58 T 12-10-2018 AMJ96_CH00577 a475d379da2de3666998b6023849ec78 738 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 510 607 1.1E-22 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMJ96_CH01555 dad261d4ddf9e3a88fab7b4d1c92ad92 206 SUPERFAMILY SSF63380 1 97 2.55E-21 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMJ96_CH01555 dad261d4ddf9e3a88fab7b4d1c92ad92 206 PIRSF PIRSF000498 1 206 1.7E-70 T 12-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMJ96_CH01555 dad261d4ddf9e3a88fab7b4d1c92ad92 206 Gene3D G3DSA:2.40.30.20 1 93 2.3E-23 T 12-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_CH01555 dad261d4ddf9e3a88fab7b4d1c92ad92 206 Gene3D G3DSA:2.40.30.20 106 205 5.7E-34 T 12-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 AMJ96_CH01555 dad261d4ddf9e3a88fab7b4d1c92ad92 206 Pfam PF00677 Lumazine binding domain 104 188 6.5E-22 T 12-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMJ96_CH01555 dad261d4ddf9e3a88fab7b4d1c92ad92 206 Pfam PF00677 Lumazine binding domain 3 90 1.0E-19 T 12-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMJ96_CH01555 dad261d4ddf9e3a88fab7b4d1c92ad92 206 SUPERFAMILY SSF63380 97 199 6.29E-31 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel AMJ96_CH01555 dad261d4ddf9e3a88fab7b4d1c92ad92 206 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 197 1.7E-50 T 12-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMJ96_CH02945 20c920c1c95c2c8c4ad91bda12726ee9 118 SUPERFAMILY SSF50090 8 116 3.77E-23 T 12-10-2018 IPR008990 Electron transport accessory-like domain superfamily AMJ96_CH02945 20c920c1c95c2c8c4ad91bda12726ee9 118 TIGRFAM TIGR03889 nitrile_acc: nitrile hydratase accessory protein 21 90 3.9E-28 T 12-10-2018 IPR023808 Nitrile hydratase accessory protein, putative AMJ96_CH02945 20c920c1c95c2c8c4ad91bda12726ee9 118 Pfam PF02211 Nitrile hydratase beta subunit 17 104 7.3E-6 T 12-10-2018 IPR024690 Nitrile hydratase beta subunit domain GO:0018822 KEGG: 00364+4.2.1.84|KEGG: 00380+4.2.1.84|KEGG: 00627+4.2.1.84|KEGG: 00643+4.2.1.84|MetaCyc: PWY-5025|MetaCyc: PWY-581|MetaCyc: PWY-7308 AMJ96_CH02945 20c920c1c95c2c8c4ad91bda12726ee9 118 Gene3D G3DSA:1.10.472.20 6 114 1.3E-13 T 12-10-2018 AMJ96_CH02448 c2d506d8946cfbed8cb034379d180327 324 SUPERFAMILY SSF53474 33 294 1.59E-23 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02448 c2d506d8946cfbed8cb034379d180327 324 Gene3D G3DSA:3.40.50.1820 73 295 1.3E-21 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02448 c2d506d8946cfbed8cb034379d180327 324 Pfam PF12697 Alpha/beta hydrolase family 89 272 1.1E-6 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH02350 4644c89e0464d1c29cd326a89436a3a5 345 Gene3D G3DSA:3.40.50.720 3 132 1.7E-31 T 12-10-2018 AMJ96_CH02350 4644c89e0464d1c29cd326a89436a3a5 345 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 134 229 4.2E-9 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AMJ96_CH02350 4644c89e0464d1c29cd326a89436a3a5 345 SUPERFAMILY SSF51735 4 154 1.27E-41 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02350 4644c89e0464d1c29cd326a89436a3a5 345 Gene3D G3DSA:3.30.360.10 133 344 2.1E-43 T 12-10-2018 AMJ96_CH02350 4644c89e0464d1c29cd326a89436a3a5 345 SUPERFAMILY SSF55347 126 320 8.01E-31 T 12-10-2018 AMJ96_CH02350 4644c89e0464d1c29cd326a89436a3a5 345 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 121 1.0E-20 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_CH03235 b24194debe65eef3a2e209fa86759cec 559 ProSitePatterns PS00722 Formate--tetrahydrofolate ligase signature 2. 331 342 - T 12-10-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 AMJ96_CH03235 b24194debe65eef3a2e209fa86759cec 559 Gene3D G3DSA:3.30.1510.10 132 250 3.1E-207 T 12-10-2018 AMJ96_CH03235 b24194debe65eef3a2e209fa86759cec 559 ProSitePatterns PS00721 Formate--tetrahydrofolate ligase signature 1. 106 116 - T 12-10-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 AMJ96_CH03235 b24194debe65eef3a2e209fa86759cec 559 Pfam PF01268 Formate--tetrahydrofolate ligase 5 559 1.7E-266 T 12-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 AMJ96_CH03235 b24194debe65eef3a2e209fa86759cec 559 Hamap MF_01543 Formate--tetrahydrofolate ligase [fhs]. 4 559 48.059 T 12-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 AMJ96_CH03235 b24194debe65eef3a2e209fa86759cec 559 Gene3D G3DSA:3.40.50.300 9 441 3.1E-207 T 12-10-2018 AMJ96_CH03235 b24194debe65eef3a2e209fa86759cec 559 Gene3D G3DSA:3.10.410.10 446 535 5.9E-34 T 12-10-2018 AMJ96_CH03235 b24194debe65eef3a2e209fa86759cec 559 SUPERFAMILY SSF52540 7 557 1.53E-245 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02975 0c4caeabee6f1842908805ed75067f98 304 SUPERFAMILY SSF46689 244 289 2.58E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02975 0c4caeabee6f1842908805ed75067f98 304 SUPERFAMILY SSF51215 48 159 1.44E-20 T 12-10-2018 IPR037923 Transcription regulator HTH-like AMJ96_CH02975 0c4caeabee6f1842908805ed75067f98 304 SUPERFAMILY SSF46689 192 241 6.72E-6 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02975 0c4caeabee6f1842908805ed75067f98 304 Pfam PF02311 AraC-like ligand binding domain 40 165 1.9E-26 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMJ96_CH02975 0c4caeabee6f1842908805ed75067f98 304 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 245 286 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_CH02975 0c4caeabee6f1842908805ed75067f98 304 Gene3D G3DSA:1.10.10.60 189 294 6.8E-25 T 12-10-2018 AMJ96_CH02975 0c4caeabee6f1842908805ed75067f98 304 SMART SM00342 208 290 2.4E-19 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH02975 0c4caeabee6f1842908805ed75067f98 304 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 259 274 1.8E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_CH02975 0c4caeabee6f1842908805ed75067f98 304 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 274 290 1.8E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_CH02975 0c4caeabee6f1842908805ed75067f98 304 Pfam PF12833 Helix-turn-helix domain 216 289 1.7E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH02412 188db8b253ddea618434b4e92ab8169e 389 Pfam PF02405 Permease MlaE 172 382 1.2E-66 T 12-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 AMJ96_CH02412 188db8b253ddea618434b4e92ab8169e 389 SUPERFAMILY SSF52091 23 107 3.73E-13 T 12-10-2018 IPR036513 STAS domain superfamily AMJ96_CH02412 188db8b253ddea618434b4e92ab8169e 389 Pfam PF13466 STAS domain 30 106 2.1E-11 T 12-10-2018 IPR002645 STAS domain AMJ96_CH02412 188db8b253ddea618434b4e92ab8169e 389 Gene3D G3DSA:3.30.750.24 16 110 5.2E-12 T 12-10-2018 IPR036513 STAS domain superfamily AMJ96_CH02412 188db8b253ddea618434b4e92ab8169e 389 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 172 382 2.3E-65 T 12-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria AMJ96_CH03444 59362aef1f5f096933bd7972440b10e0 233 SUPERFAMILY SSF52141 7 226 1.44E-90 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_CH03444 59362aef1f5f096933bd7972440b10e0 233 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 62 71 - T 12-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_CH03444 59362aef1f5f096933bd7972440b10e0 233 SMART SM00986 54 214 1.6E-38 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_CH03444 59362aef1f5f096933bd7972440b10e0 233 SMART SM00987 54 214 1.6E-38 T 12-10-2018 AMJ96_CH03444 59362aef1f5f096933bd7972440b10e0 233 Gene3D G3DSA:3.40.470.10 2 229 7.5E-98 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_CH03444 59362aef1f5f096933bd7972440b10e0 233 Pfam PF03167 Uracil DNA glycosylase superfamily 59 213 1.2E-22 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_CH03444 59362aef1f5f096933bd7972440b10e0 233 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 9 225 39.836 T 12-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_CH03444 59362aef1f5f096933bd7972440b10e0 233 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 10 218 2.4E-80 T 12-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_CH02267 1565e48b6a3e6c4fea0ec05f42ec77a4 323 PIRSF PIRSF006431 1 320 1.4E-112 T 12-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 AMJ96_CH02267 1565e48b6a3e6c4fea0ec05f42ec77a4 323 Pfam PF00561 alpha/beta hydrolase fold 38 300 6.2E-21 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH02267 1565e48b6a3e6c4fea0ec05f42ec77a4 323 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 9 317 2.4E-101 T 12-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 AMJ96_CH02267 1565e48b6a3e6c4fea0ec05f42ec77a4 323 Gene3D G3DSA:3.40.50.1820 1 320 3.5E-85 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02267 1565e48b6a3e6c4fea0ec05f42ec77a4 323 SUPERFAMILY SSF53474 4 301 3.38E-50 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02267 1565e48b6a3e6c4fea0ec05f42ec77a4 323 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 63 74 8.0E-13 T 12-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AMJ96_CH02267 1565e48b6a3e6c4fea0ec05f42ec77a4 323 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 37 45 8.0E-13 T 12-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AMJ96_CH02267 1565e48b6a3e6c4fea0ec05f42ec77a4 323 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 111 125 8.0E-13 T 12-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 AMJ96_CH01513 81a200d19128e482a95382ee8405b0d7 349 Pfam PF00990 Diguanylate cyclase, GGDEF domain 187 341 1.9E-30 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01513 81a200d19128e482a95382ee8405b0d7 349 Gene3D G3DSA:3.30.70.270 183 349 8.2E-36 T 12-10-2018 AMJ96_CH01513 81a200d19128e482a95382ee8405b0d7 349 SUPERFAMILY SSF55073 191 341 3.61E-31 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH01513 81a200d19128e482a95382ee8405b0d7 349 SMART SM00267 174 347 2.3E-28 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01513 81a200d19128e482a95382ee8405b0d7 349 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 182 341 8.1E-29 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PB00438 da9e8a83e1964d1e767f49358ad998e7 312 SUPERFAMILY SSF110849 49 139 3.31E-19 T 12-10-2018 IPR036086 ParB/Sulfiredoxin superfamily AMJ96_PB00438 da9e8a83e1964d1e767f49358ad998e7 312 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 43 223 3.2E-56 T 12-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 AMJ96_PB00438 da9e8a83e1964d1e767f49358ad998e7 312 TIGRFAM TIGR03454 partition_RepB: plasmid partitioning protein RepB 14 303 3.9E-101 T 12-10-2018 IPR017819 Plasmid partitioning protein, RepB AMJ96_PB00438 da9e8a83e1964d1e767f49358ad998e7 312 Pfam PF02195 ParB-like nuclease domain 52 136 2.7E-16 T 12-10-2018 IPR003115 ParB/Sulfiredoxin AMJ96_PB00438 da9e8a83e1964d1e767f49358ad998e7 312 SMART SM00470 49 137 7.5E-24 T 12-10-2018 IPR003115 ParB/Sulfiredoxin AMJ96_PB00438 da9e8a83e1964d1e767f49358ad998e7 312 Pfam PF07506 RepB plasmid partitioning protein 139 301 2.8E-17 T 12-10-2018 IPR011111 RepB plasmid partition AMJ96_PB00438 da9e8a83e1964d1e767f49358ad998e7 312 Gene3D G3DSA:3.90.1530.30 62 123 4.4E-12 T 12-10-2018 AMJ96_CH02556 8061be902fa66814b3e7cd6718d83749 211 SUPERFAMILY SSF52540 19 211 2.76E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02556 8061be902fa66814b3e7cd6718d83749 211 Gene3D G3DSA:3.40.50.300 17 211 7.8E-65 T 12-10-2018 AMJ96_CH02556 8061be902fa66814b3e7cd6718d83749 211 PIRSF PIRSF015617 12 211 1.5E-71 T 12-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 AMJ96_CH02556 8061be902fa66814b3e7cd6718d83749 211 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 13 32 1.3E-5 T 12-10-2018 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17 AMJ96_CH02556 8061be902fa66814b3e7cd6718d83749 211 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 37 211 1.3E-65 T 12-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 AMJ96_CH02556 8061be902fa66814b3e7cd6718d83749 211 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 39 211 1.6E-59 T 12-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 AMJ96_PB00369 920b85ee79a444a5a4f8879018f80387 52 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 2 45 1.8E-19 T 12-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type AMJ96_PB00369 920b85ee79a444a5a4f8879018f80387 52 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 1 47 7.7E-27 T 12-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type AMJ96_PD00404 fc947701ca79261cf83d5f74b4bc8f21 86 SUPERFAMILY SSF47598 3 45 7.04E-10 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMJ96_PD00404 fc947701ca79261cf83d5f74b4bc8f21 86 Pfam PF01402 Ribbon-helix-helix protein, copG family 6 43 2.6E-8 T 12-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 AMJ96_CH02661 be5a4cdb6e67d1126dd7225628189ce0 415 SUPERFAMILY SSF90257 165 274 1.91E-5 T 12-10-2018 AMJ96_CH02661 be5a4cdb6e67d1126dd7225628189ce0 415 SUPERFAMILY SSF46579 298 388 2.09E-5 T 12-10-2018 AMJ96_CH00571 a2e08f83d64370c9f45525eb9da60642 266 Pfam PF09608 Putative transmembrane protein (Alph_Pro_TM) 35 265 1.1E-78 T 12-10-2018 IPR019088 Conserved hypothetical protein CHP02186-related, transmembrane AMJ96_CH00571 a2e08f83d64370c9f45525eb9da60642 266 TIGRFAM TIGR02186 alph_Pro_TM: conserved hypothetical protein 19 266 2.7E-105 T 12-10-2018 IPR019088 Conserved hypothetical protein CHP02186-related, transmembrane AMJ96_CH02506 436efac91b589ad6a1e83a60fdb549e9 185 SUPERFAMILY SSF50199 34 158 2.75E-26 T 12-10-2018 AMJ96_CH02506 436efac91b589ad6a1e83a60fdb549e9 185 Pfam PF00565 Staphylococcal nuclease homologue 54 152 2.6E-11 T 12-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 AMJ96_CH02506 436efac91b589ad6a1e83a60fdb549e9 185 SMART SM00318 38 153 8.8E-7 T 12-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 AMJ96_CH02506 436efac91b589ad6a1e83a60fdb549e9 185 Gene3D G3DSA:2.40.50.90 28 155 4.6E-16 T 12-10-2018 IPR035437 SNase-like, OB-fold superfamily AMJ96_PD00465 0009411d1787f720b9df56889bf5d69a 331 PIRSF PIRSF001439 1 329 1.5E-82 T 12-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 AMJ96_PD00465 0009411d1787f720b9df56889bf5d69a 331 SUPERFAMILY SSF51735 1 329 5.11E-86 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00465 0009411d1787f720b9df56889bf5d69a 331 Gene3D G3DSA:3.40.50.720 128 301 4.4E-97 T 12-10-2018 AMJ96_PD00465 0009411d1787f720b9df56889bf5d69a 331 Gene3D G3DSA:3.30.1780.10 6 323 4.4E-97 T 12-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 AMJ96_PD00465 0009411d1787f720b9df56889bf5d69a 331 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 2 319 1.1E-84 T 12-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 AMJ96_CH01086 cba167e262b82ee34144412fc5329e65 115 PIRSF PIRSF033199 1 115 9.2E-60 T 12-10-2018 IPR014580 Uncharacterised conserved protein UCP033199 AMJ96_CH01086 cba167e262b82ee34144412fc5329e65 115 Pfam PF09966 Uncharacterized protein conserved in bacteria (DUF2200) 5 114 1.7E-52 T 12-10-2018 IPR014580 Uncharacterised conserved protein UCP033199 AMJ96_CH01086 cba167e262b82ee34144412fc5329e65 115 Gene3D G3DSA:1.10.8.290 1 115 2.4E-54 T 12-10-2018 IPR023204 SP1917 domain superfamily AMJ96_CH03881 b415ae40caba631d48c645f06191bfe8 377 Gene3D G3DSA:3.20.20.10 24 262 8.3E-96 T 12-10-2018 IPR029066 PLP-binding barrel AMJ96_CH03881 b415ae40caba631d48c645f06191bfe8 377 SUPERFAMILY SSF50621 230 375 2.72E-32 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMJ96_CH03881 b415ae40caba631d48c645f06191bfe8 377 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 45 63 - T 12-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site AMJ96_CH03881 b415ae40caba631d48c645f06191bfe8 377 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 260 355 1.6E-11 T 12-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 AMJ96_CH03881 b415ae40caba631d48c645f06191bfe8 377 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 65 77 1.2E-19 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMJ96_CH03881 b415ae40caba631d48c645f06191bfe8 377 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 250 269 1.2E-19 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMJ96_CH03881 b415ae40caba631d48c645f06191bfe8 377 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 45 63 1.2E-19 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMJ96_CH03881 b415ae40caba631d48c645f06191bfe8 377 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 167 180 1.2E-19 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AMJ96_CH03881 b415ae40caba631d48c645f06191bfe8 377 SUPERFAMILY SSF51419 17 262 6.98E-67 T 12-10-2018 IPR029066 PLP-binding barrel AMJ96_CH03881 b415ae40caba631d48c645f06191bfe8 377 Gene3D G3DSA:2.40.37.10 17 370 8.3E-96 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AMJ96_CH03881 b415ae40caba631d48c645f06191bfe8 377 PRINTS PR01182 Ornithine decarboxylase signature 43 70 2.4E-22 T 12-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 AMJ96_CH03881 b415ae40caba631d48c645f06191bfe8 377 PRINTS PR01182 Ornithine decarboxylase signature 117 139 2.4E-22 T 12-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 AMJ96_CH03881 b415ae40caba631d48c645f06191bfe8 377 PRINTS PR01182 Ornithine decarboxylase signature 87 111 2.4E-22 T 12-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 AMJ96_CH03881 b415ae40caba631d48c645f06191bfe8 377 PRINTS PR01182 Ornithine decarboxylase signature 319 329 2.4E-22 T 12-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 AMJ96_CH03881 b415ae40caba631d48c645f06191bfe8 377 PRINTS PR01182 Ornithine decarboxylase signature 17 41 2.4E-22 T 12-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 AMJ96_CH03881 b415ae40caba631d48c645f06191bfe8 377 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 202 218 - T 12-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site AMJ96_CH03881 b415ae40caba631d48c645f06191bfe8 377 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 25 259 2.8E-57 T 12-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 AMJ96_CH04070 fb4f48fbef8633854d0dcb56712f8571 195 Gene3D G3DSA:3.40.50.300 9 194 1.7E-56 T 12-10-2018 AMJ96_CH04070 fb4f48fbef8633854d0dcb56712f8571 195 Hamap MF_00109 Shikimate kinase [aroK]. 22 187 27.958 T 12-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AMJ96_CH04070 fb4f48fbef8633854d0dcb56712f8571 195 PRINTS PR01100 Shikimate kinase family signature 49 62 1.3E-20 T 12-10-2018 AMJ96_CH04070 fb4f48fbef8633854d0dcb56712f8571 195 PRINTS PR01100 Shikimate kinase family signature 25 40 1.3E-20 T 12-10-2018 AMJ96_CH04070 fb4f48fbef8633854d0dcb56712f8571 195 PRINTS PR01100 Shikimate kinase family signature 77 85 1.3E-20 T 12-10-2018 AMJ96_CH04070 fb4f48fbef8633854d0dcb56712f8571 195 PRINTS PR01100 Shikimate kinase family signature 95 104 1.3E-20 T 12-10-2018 AMJ96_CH04070 fb4f48fbef8633854d0dcb56712f8571 195 PRINTS PR01100 Shikimate kinase family signature 116 133 1.3E-20 T 12-10-2018 AMJ96_CH04070 fb4f48fbef8633854d0dcb56712f8571 195 SUPERFAMILY SSF52540 24 187 1.84E-27 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04070 fb4f48fbef8633854d0dcb56712f8571 195 ProSitePatterns PS01128 Shikimate kinase signature. 78 103 - T 12-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AMJ96_CH04070 fb4f48fbef8633854d0dcb56712f8571 195 Pfam PF01202 Shikimate kinase 31 186 8.6E-50 T 12-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AMJ96_CH04126 0d089cd5ebc03ee25cb44585a0326b93 131 Pfam PF00583 Acetyltransferase (GNAT) family 29 115 4.3E-11 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH04126 0d089cd5ebc03ee25cb44585a0326b93 131 SUPERFAMILY SSF55729 29 120 1.29E-16 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH04126 0d089cd5ebc03ee25cb44585a0326b93 131 Gene3D G3DSA:3.40.630.30 1 130 2.1E-25 T 12-10-2018 AMJ96_CH00457 8d19a01e3bb0d060890925a4f2b5a13a 505 SMART SM00304 208 263 0.0022 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH00457 8d19a01e3bb0d060890925a4f2b5a13a 505 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 377 489 4.3E-19 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00457 8d19a01e3bb0d060890925a4f2b5a13a 505 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 435 3.5E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00457 8d19a01e3bb0d060890925a4f2b5a13a 505 PRINTS PR00344 Bacterial sensor protein C-terminal signature 451 469 3.5E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00457 8d19a01e3bb0d060890925a4f2b5a13a 505 PRINTS PR00344 Bacterial sensor protein C-terminal signature 475 488 3.5E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH00457 8d19a01e3bb0d060890925a4f2b5a13a 505 Gene3D G3DSA:3.30.565.10 337 496 1.9E-30 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00457 8d19a01e3bb0d060890925a4f2b5a13a 505 SMART SM00387 376 491 2.6E-24 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH00457 8d19a01e3bb0d060890925a4f2b5a13a 505 SUPERFAMILY SSF55874 331 489 3.93E-32 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00457 8d19a01e3bb0d060890925a4f2b5a13a 505 Gene3D G3DSA:1.10.287.130 206 328 1.1E-6 T 12-10-2018 AMJ96_PB00403 aa249d69c60fe012e4c236551b10ff71 109 Pfam PF07883 Cupin domain 38 106 1.5E-10 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_PB00403 aa249d69c60fe012e4c236551b10ff71 109 Gene3D G3DSA:2.60.120.10 1 109 4.9E-21 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PB00403 aa249d69c60fe012e4c236551b10ff71 109 SUPERFAMILY SSF51182 6 109 7.74E-17 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH02186 52eb4494beab5fadf1448b890dc8d9e2 341 PIRSF PIRSF002825 1 337 2.1E-61 T 12-10-2018 IPR026045 Ferric binding protein AMJ96_CH02186 52eb4494beab5fadf1448b890dc8d9e2 341 SUPERFAMILY SSF53850 22 334 1.09E-73 T 12-10-2018 AMJ96_CH02186 52eb4494beab5fadf1448b890dc8d9e2 341 Pfam PF13343 Bacterial extracellular solute-binding protein 73 316 4.7E-33 T 12-10-2018 AMJ96_CH02186 52eb4494beab5fadf1448b890dc8d9e2 341 Gene3D G3DSA:3.40.190.10 131 317 6.6E-104 T 12-10-2018 AMJ96_CH02186 52eb4494beab5fadf1448b890dc8d9e2 341 Gene3D G3DSA:3.40.190.10 31 303 6.6E-104 T 12-10-2018 AMJ96_CH02948 0d255356e3c1dbebbf87377c2931ca73 273 Pfam PF13460 NAD(P)H-binding 7 79 2.5E-9 T 12-10-2018 IPR016040 NAD(P)-binding domain AMJ96_CH02948 0d255356e3c1dbebbf87377c2931ca73 273 Pfam PF13781 DoxX-like family 167 264 4.0E-22 T 12-10-2018 IPR025695 DoxX-like family AMJ96_CH02948 0d255356e3c1dbebbf87377c2931ca73 273 Gene3D G3DSA:3.40.50.720 1 153 1.7E-19 T 12-10-2018 AMJ96_CH02948 0d255356e3c1dbebbf87377c2931ca73 273 SUPERFAMILY SSF51735 1 143 1.08E-18 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01263 58ebe55602b2b543c317eb726a5d3dae 668 SUPERFAMILY SSF48452 435 605 1.14E-18 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01263 58ebe55602b2b543c317eb726a5d3dae 668 Gene3D G3DSA:1.10.10.10 1 93 1.5E-12 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01263 58ebe55602b2b543c317eb726a5d3dae 668 SUPERFAMILY SSF48452 97 258 1.46E-10 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01263 58ebe55602b2b543c317eb726a5d3dae 668 SUPERFAMILY SSF46894 2 81 9.18E-6 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH01263 58ebe55602b2b543c317eb726a5d3dae 668 Gene3D G3DSA:1.25.40.10 393 665 8.7E-23 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01263 58ebe55602b2b543c317eb726a5d3dae 668 Pfam PF03704 Bacterial transcriptional activator domain 112 239 8.3E-16 T 12-10-2018 IPR005158 Bacterial transcriptional activator domain AMJ96_CH01263 58ebe55602b2b543c317eb726a5d3dae 668 SMART SM01043 100 240 9.5E-31 T 12-10-2018 IPR005158 Bacterial transcriptional activator domain AMJ96_CH01263 58ebe55602b2b543c317eb726a5d3dae 668 Gene3D G3DSA:1.25.40.10 98 256 5.8E-23 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01263 58ebe55602b2b543c317eb726a5d3dae 668 SMART SM00028 197 230 46.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH01263 58ebe55602b2b543c317eb726a5d3dae 668 SMART SM00028 414 452 190.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH01263 58ebe55602b2b543c317eb726a5d3dae 668 SMART SM00028 569 602 17.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH01807 fd6b1d02b78db3717613b5c65125a40d 280 Pfam PF00582 Universal stress protein family 3 115 1.8E-5 T 12-10-2018 IPR006016 UspA AMJ96_CH01807 fd6b1d02b78db3717613b5c65125a40d 280 SUPERFAMILY SSF52402 1 146 4.35E-9 T 12-10-2018 AMJ96_CH01807 fd6b1d02b78db3717613b5c65125a40d 280 SUPERFAMILY SSF52402 153 273 3.52E-14 T 12-10-2018 AMJ96_CH01807 fd6b1d02b78db3717613b5c65125a40d 280 Gene3D G3DSA:3.40.50.12370 5 280 1.1E-27 T 12-10-2018 AMJ96_CH03330 1f1a06b6314b8d3415b9aa2f04142083 346 SUPERFAMILY SSF53822 25 319 1.62E-70 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH03330 1f1a06b6314b8d3415b9aa2f04142083 346 Gene3D G3DSA:3.40.50.2300 29 309 1.3E-99 T 12-10-2018 AMJ96_CH03330 1f1a06b6314b8d3415b9aa2f04142083 346 Gene3D G3DSA:3.40.50.2300 128 320 1.3E-99 T 12-10-2018 AMJ96_CH03330 1f1a06b6314b8d3415b9aa2f04142083 346 Pfam PF13407 Periplasmic binding protein domain 28 285 1.7E-63 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_CH03330 1f1a06b6314b8d3415b9aa2f04142083 346 TIGRFAM TIGR02634 xylF: D-xylose ABC transporter, D-xylose-binding protein 28 332 1.8E-133 T 12-10-2018 IPR013456 D-xylose ABC transporter, substrate-binding protein GO:0015753|GO:0048029 AMJ96_PC00101 a6fa2380f02a334425ecc11546476f56 111 Gene3D G3DSA:1.10.260.40 1 80 2.6E-16 T 12-10-2018 AMJ96_CH04183 ca918ffaef2c890d194c8e328432cd2b 197 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 2 176 23.882 T 12-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 AMJ96_CH04183 ca918ffaef2c890d194c8e328432cd2b 197 Gene3D G3DSA:3.90.1140.10 1 177 2.4E-38 T 12-10-2018 AMJ96_CH04183 ca918ffaef2c890d194c8e328432cd2b 197 Pfam PF02834 LigT like Phosphoesterase 93 168 3.7E-12 T 12-10-2018 IPR014051 Phosphoesterase, HXTX AMJ96_CH04183 ca918ffaef2c890d194c8e328432cd2b 197 Pfam PF02834 LigT like Phosphoesterase 9 85 1.6E-16 T 12-10-2018 IPR014051 Phosphoesterase, HXTX AMJ96_CH04183 ca918ffaef2c890d194c8e328432cd2b 197 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 2 176 2.3E-46 T 12-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 AMJ96_CH04183 ca918ffaef2c890d194c8e328432cd2b 197 SUPERFAMILY SSF55144 2 176 3.14E-42 T 12-10-2018 IPR009097 Cyclic phosphodiesterase AMJ96_CH03385 4efb026ba9fb3f8af8a089eaf7412ba7 505 Pfam PF00355 Rieske [2Fe-2S] domain 425 503 7.3E-9 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMJ96_CH03385 4efb026ba9fb3f8af8a089eaf7412ba7 505 SUPERFAMILY SSF50022 427 503 3.4E-20 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMJ96_CH03385 4efb026ba9fb3f8af8a089eaf7412ba7 505 Gene3D G3DSA:3.30.9.10 124 339 1.1E-48 T 12-10-2018 AMJ96_CH03385 4efb026ba9fb3f8af8a089eaf7412ba7 505 Pfam PF01266 FAD dependent oxidoreductase 31 376 5.6E-41 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_CH03385 4efb026ba9fb3f8af8a089eaf7412ba7 505 Gene3D G3DSA:2.102.10.10 415 505 4.4E-19 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMJ96_CH03385 4efb026ba9fb3f8af8a089eaf7412ba7 505 SUPERFAMILY SSF51905 29 305 8.42E-34 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03385 4efb026ba9fb3f8af8a089eaf7412ba7 505 PRINTS PR00162 Rieske 2Fe-2S subunit signature 457 468 7.5E-6 T 12-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMJ96_CH03385 4efb026ba9fb3f8af8a089eaf7412ba7 505 PRINTS PR00162 Rieske 2Fe-2S subunit signature 478 490 7.5E-6 T 12-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMJ96_CH03385 4efb026ba9fb3f8af8a089eaf7412ba7 505 PRINTS PR00162 Rieske 2Fe-2S subunit signature 490 502 7.5E-6 T 12-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMJ96_CH03385 4efb026ba9fb3f8af8a089eaf7412ba7 505 Gene3D G3DSA:3.50.50.60 31 380 1.1E-48 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH00265 e287adb47f5946186f01486599e050fd 296 SUPERFAMILY SSF103481 197 292 1.15E-7 T 12-10-2018 AMJ96_CH00265 e287adb47f5946186f01486599e050fd 296 Pfam PF00892 EamA-like transporter family 161 289 7.0E-14 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH00265 e287adb47f5946186f01486599e050fd 296 SUPERFAMILY SSF103481 59 149 1.7E-5 T 12-10-2018 AMJ96_PD00347 70ea57af46a7c4d35d915ea51797fd20 275 Gene3D G3DSA:3.40.190.10 45 262 3.1E-77 T 12-10-2018 AMJ96_PD00347 70ea57af46a7c4d35d915ea51797fd20 275 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 45 263 3.6E-53 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PD00347 70ea57af46a7c4d35d915ea51797fd20 275 SUPERFAMILY SSF53850 17 265 1.91E-55 T 12-10-2018 AMJ96_PD00347 70ea57af46a7c4d35d915ea51797fd20 275 SMART SM00062 44 265 9.4E-47 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PD00347 70ea57af46a7c4d35d915ea51797fd20 275 Gene3D G3DSA:3.40.190.10 133 223 3.1E-77 T 12-10-2018 AMJ96_PD00347 70ea57af46a7c4d35d915ea51797fd20 275 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 67 80 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site AMJ96_PD00045 3719934a5807a41efcda7f56bd7f165b 417 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 13 120 5.8E-8 T 12-10-2018 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 AMJ96_PD00045 3719934a5807a41efcda7f56bd7f165b 417 SUPERFAMILY SSF54966 1 124 3.14E-35 T 12-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 AMJ96_PD00045 3719934a5807a41efcda7f56bd7f165b 417 Gene3D G3DSA:3.20.20.110 126 414 9.3E-91 T 12-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 AMJ96_PD00045 3719934a5807a41efcda7f56bd7f165b 417 ProSitePatterns PS00157 Ribulose bisphosphate carboxylase large chain active site. 172 180 - T 12-10-2018 IPR020878 Ribulose bisphosphate carboxylase, large chain, active site GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 AMJ96_PD00045 3719934a5807a41efcda7f56bd7f165b 417 Gene3D G3DSA:3.30.70.150 1 124 6.2E-33 T 12-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 AMJ96_PD00045 3719934a5807a41efcda7f56bd7f165b 417 SUPERFAMILY SSF51649 124 413 6.81E-83 T 12-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 AMJ96_PD00045 3719934a5807a41efcda7f56bd7f165b 417 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 130 411 5.0E-102 T 12-10-2018 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 AMJ96_CH01674 c79b32af8e4e431569b219a36ca963c5 429 Gene3D G3DSA:3.20.20.140 62 373 7.0E-113 T 12-10-2018 AMJ96_CH01674 c79b32af8e4e431569b219a36ca963c5 429 Gene3D G3DSA:2.30.40.10 11 426 7.0E-113 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH01674 c79b32af8e4e431569b219a36ca963c5 429 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 42 427 9.9E-96 T 12-10-2018 AMJ96_CH01674 c79b32af8e4e431569b219a36ca963c5 429 SUPERFAMILY SSF51338 4 427 1.33E-24 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH01674 c79b32af8e4e431569b219a36ca963c5 429 Pfam PF01979 Amidohydrolase family 58 426 1.3E-19 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMJ96_CH01674 c79b32af8e4e431569b219a36ca963c5 429 SUPERFAMILY SSF51556 61 373 2.5E-90 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_CH02343 f389f6d86f1af4348ff4ea1dc34afeb5 223 Hamap MF_00421 Phosphoribosylformylglycinamidine synthase subunit PurQ [purQ]. 1 219 41.818 T 12-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMJ96_CH02343 f389f6d86f1af4348ff4ea1dc34afeb5 223 Gene3D G3DSA:3.40.50.880 1 222 3.5E-63 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH02343 f389f6d86f1af4348ff4ea1dc34afeb5 223 TIGRFAM TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I 1 219 6.3E-94 T 12-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMJ96_CH02343 f389f6d86f1af4348ff4ea1dc34afeb5 223 PIRSF PIRSF001586 1 223 2.1E-85 T 12-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMJ96_CH02343 f389f6d86f1af4348ff4ea1dc34afeb5 223 SMART SM01211 1 221 9.9E-120 T 12-10-2018 AMJ96_CH02343 f389f6d86f1af4348ff4ea1dc34afeb5 223 SUPERFAMILY SSF52317 1 219 3.44E-71 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH02343 f389f6d86f1af4348ff4ea1dc34afeb5 223 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 2 203 2.7E-37 T 12-10-2018 AMJ96_CH02369 82e00cc532a298d8c0677f07e1279c6d 157 Gene3D G3DSA:3.40.630.30 1 156 1.3E-39 T 12-10-2018 AMJ96_CH02369 82e00cc532a298d8c0677f07e1279c6d 157 Pfam PF13673 Acetyltransferase (GNAT) domain 32 142 1.4E-16 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH02369 82e00cc532a298d8c0677f07e1279c6d 157 SUPERFAMILY SSF55729 5 153 2.74E-32 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_PC00105 04b4a142336b35aa67aa2073cc3413f9 694 SUPERFAMILY SSF53850 103 656 1.38E-76 T 12-10-2018 AMJ96_PC00105 04b4a142336b35aa67aa2073cc3413f9 694 Gene3D G3DSA:3.10.105.10 393 631 1.6E-32 T 12-10-2018 AMJ96_PC00105 04b4a142336b35aa67aa2073cc3413f9 694 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 154 553 5.1E-66 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_PC00105 04b4a142336b35aa67aa2073cc3413f9 694 Gene3D G3DSA:3.40.190.10 89 373 1.1E-42 T 12-10-2018 AMJ96_PC00105 04b4a142336b35aa67aa2073cc3413f9 694 PIRSF PIRSF002741 140 391 1.3E-25 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_PC00105 04b4a142336b35aa67aa2073cc3413f9 694 PIRSF PIRSF002741 402 664 1.1E-17 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_PC00105 04b4a142336b35aa67aa2073cc3413f9 694 PIRSF PIRSF002741 3 71 480.0 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_CH02519 0f7b38b7d22542ccbadd1da4eb1f1910 537 Gene3D G3DSA:2.60.120.200 327 537 4.8E-59 T 12-10-2018 AMJ96_CH02519 0f7b38b7d22542ccbadd1da4eb1f1910 537 SUPERFAMILY SSF75005 2 308 1.3E-98 T 12-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily AMJ96_CH02519 0f7b38b7d22542ccbadd1da4eb1f1910 537 Pfam PF04616 Glycosyl hydrolases family 43 2 300 1.1E-107 T 12-10-2018 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AMJ96_CH02519 0f7b38b7d22542ccbadd1da4eb1f1910 537 SUPERFAMILY SSF49899 326 536 3.17E-62 T 12-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily AMJ96_CH02519 0f7b38b7d22542ccbadd1da4eb1f1910 537 Gene3D G3DSA:2.115.10.20 1 315 1.0E-100 T 12-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily AMJ96_CH02711 4ee67d9f3f8528f0687fef1710ae39e0 186 Gene3D G3DSA:3.40.50.12280 26 186 2.3E-75 T 12-10-2018 AMJ96_CH02711 4ee67d9f3f8528f0687fef1710ae39e0 186 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 146 162 - T 12-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH02711 4ee67d9f3f8528f0687fef1710ae39e0 186 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 39 180 1.3E-71 T 12-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH02711 4ee67d9f3f8528f0687fef1710ae39e0 186 SUPERFAMILY SSF56770 37 181 1.27E-64 T 12-10-2018 AMJ96_CH02711 4ee67d9f3f8528f0687fef1710ae39e0 186 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 28 179 39.092 T 12-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH02711 4ee67d9f3f8528f0687fef1710ae39e0 186 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 65 172 2.7E-23 T 12-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03712 9d384a73ecf6f4450b98ce2c273a3406 181 SUPERFAMILY SSF50475 23 152 7.86E-26 T 12-10-2018 AMJ96_CH03712 9d384a73ecf6f4450b98ce2c273a3406 181 Pfam PF16242 Pyridoxamine 5'-phosphate oxidase like 26 168 5.8E-47 T 12-10-2018 IPR038725 General stress protein, FMN-binding split barrel domain AMJ96_CH03712 9d384a73ecf6f4450b98ce2c273a3406 181 Gene3D G3DSA:2.30.110.10 22 180 1.6E-39 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMJ96_PC00363 3f77fa33b1949133a869a5122c798e82 235 SMART SM00345 23 82 1.4E-22 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00363 3f77fa33b1949133a869a5122c798e82 235 SUPERFAMILY SSF46785 14 86 1.45E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00363 3f77fa33b1949133a869a5122c798e82 235 Gene3D G3DSA:1.20.120.530 97 233 8.2E-30 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PC00363 3f77fa33b1949133a869a5122c798e82 235 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 82 1.5E-21 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00363 3f77fa33b1949133a869a5122c798e82 235 Gene3D G3DSA:1.10.10.10 10 82 5.5E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00363 3f77fa33b1949133a869a5122c798e82 235 Pfam PF07729 FCD domain 100 220 4.7E-25 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PC00363 3f77fa33b1949133a869a5122c798e82 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 4.8E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00363 3f77fa33b1949133a869a5122c798e82 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 4.8E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00363 3f77fa33b1949133a869a5122c798e82 235 SMART SM00895 100 221 3.2E-19 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PC00363 3f77fa33b1949133a869a5122c798e82 235 SUPERFAMILY SSF48008 98 228 1.31E-27 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH03862 f35bbfca2056352a69397144d3967daa 74 Pfam PF07835 Bacterial aa3 type cytochrome c oxidase subunit IV 4 49 1.4E-22 T 12-10-2018 IPR012422 Cytochrome c oxidase, subunit IV, bacterial aa3 type KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 AMJ96_CH03862 f35bbfca2056352a69397144d3967daa 74 SUPERFAMILY SSF81469 11 49 3.53E-12 T 12-10-2018 IPR036596 Bacterial aa3 type cytochrome c oxidase subunit IV superfamily KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 AMJ96_CH02374 93e507c978467e3775c0b7d443d4174d 205 Gene3D G3DSA:1.10.1050.10 7 205 6.5E-68 T 12-10-2018 AMJ96_CH02374 93e507c978467e3775c0b7d443d4174d 205 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 6 205 5.1E-70 T 12-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMJ96_CH02374 93e507c978467e3775c0b7d443d4174d 205 ProSitePatterns PS00632 Ribosomal protein S4 signature. 92 116 - T 12-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH02374 93e507c978467e3775c0b7d443d4174d 205 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 205 32.045 T 12-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMJ96_CH02374 93e507c978467e3775c0b7d443d4174d 205 SMART SM00363 94 158 5.3E-18 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH02374 93e507c978467e3775c0b7d443d4174d 205 SMART SM01390 3 93 2.4E-37 T 12-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 AMJ96_CH02374 93e507c978467e3775c0b7d443d4174d 205 Gene3D G3DSA:3.10.290.10 93 188 6.5E-68 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMJ96_CH02374 93e507c978467e3775c0b7d443d4174d 205 Pfam PF01479 S4 domain 95 141 3.6E-17 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH02374 93e507c978467e3775c0b7d443d4174d 205 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 6 93 4.3E-24 T 12-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 AMJ96_CH02374 93e507c978467e3775c0b7d443d4174d 205 SUPERFAMILY SSF55174 5 205 3.93E-61 T 12-10-2018 AMJ96_CH00485 8ff86204686bbc183a7bb5c6c7fcd2d4 339 Pfam PF13407 Periplasmic binding protein domain 30 299 1.9E-43 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_CH00485 8ff86204686bbc183a7bb5c6c7fcd2d4 339 Gene3D G3DSA:3.40.50.2300 31 296 8.7E-67 T 12-10-2018 AMJ96_CH00485 8ff86204686bbc183a7bb5c6c7fcd2d4 339 SUPERFAMILY SSF53822 24 323 2.54E-62 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH00485 8ff86204686bbc183a7bb5c6c7fcd2d4 339 Gene3D G3DSA:3.40.50.2300 131 278 8.7E-67 T 12-10-2018 AMJ96_PA00109 46686f1d3c7b3f5f9e99aabfc0c54b29 282 Gene3D G3DSA:1.10.3720.10 2 275 1.6E-53 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00109 46686f1d3c7b3f5f9e99aabfc0c54b29 282 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 277 1.4E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PA00109 46686f1d3c7b3f5f9e99aabfc0c54b29 282 SUPERFAMILY SSF161098 4 278 5.76E-58 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02494 d86dec126774ebcd0c36494efd6adb91 107 Pfam PF12840 Helix-turn-helix domain 8 66 3.4E-13 T 12-10-2018 AMJ96_CH02494 d86dec126774ebcd0c36494efd6adb91 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 57 72 3.7E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH02494 d86dec126774ebcd0c36494efd6adb91 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 42 57 3.7E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH02494 d86dec126774ebcd0c36494efd6adb91 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 9 24 3.7E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH02494 d86dec126774ebcd0c36494efd6adb91 107 SUPERFAMILY SSF46785 8 98 5.89E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02494 d86dec126774ebcd0c36494efd6adb91 107 Gene3D G3DSA:1.10.10.10 3 107 5.6E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02494 d86dec126774ebcd0c36494efd6adb91 107 SMART SM00418 7 82 4.3E-19 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH00334 657568915134cf8085f97619d10e8641 305 PIRSF PIRSF005917 19 302 6.1E-100 T 12-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 AMJ96_CH00334 657568915134cf8085f97619d10e8641 305 Gene3D G3DSA:3.40.1010.10 19 137 1.8E-43 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMJ96_CH00334 657568915134cf8085f97619d10e8641 305 Gene3D G3DSA:3.30.950.10 138 256 1.2E-39 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AMJ96_CH00334 657568915134cf8085f97619d10e8641 305 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 31 231 7.1E-29 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMJ96_CH00334 657568915134cf8085f97619d10e8641 305 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 108 119 - T 12-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 AMJ96_CH00334 657568915134cf8085f97619d10e8641 305 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 31 297 5.6E-79 T 12-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 AMJ96_CH00334 657568915134cf8085f97619d10e8641 305 SUPERFAMILY SSF53790 29 248 2.49E-80 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMJ96_CH00334 657568915134cf8085f97619d10e8641 305 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 30 250 37.38 T 12-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 AMJ96_CH01481 a7ce004bc93f73d8c0ab8b9eebf2133d 465 SUPERFAMILY SSF54211 254 430 9.1E-36 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_CH01481 a7ce004bc93f73d8c0ab8b9eebf2133d 465 Pfam PF13541 Subunit ChlI of Mg-chelatase 343 428 6.2E-8 T 12-10-2018 AMJ96_CH01481 a7ce004bc93f73d8c0ab8b9eebf2133d 465 SMART SM00382 88 243 3.1E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01481 a7ce004bc93f73d8c0ab8b9eebf2133d 465 Gene3D G3DSA:3.40.50.300 64 288 2.3E-43 T 12-10-2018 AMJ96_CH01481 a7ce004bc93f73d8c0ab8b9eebf2133d 465 Gene3D G3DSA:3.30.230.10 292 452 1.3E-13 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMJ96_CH01481 a7ce004bc93f73d8c0ab8b9eebf2133d 465 SUPERFAMILY SSF52540 65 288 6.75E-50 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01481 a7ce004bc93f73d8c0ab8b9eebf2133d 465 PRINTS PR01874 DNA repair protein radA signature 321 344 9.5E-88 T 12-10-2018 AMJ96_CH01481 a7ce004bc93f73d8c0ab8b9eebf2133d 465 PRINTS PR01874 DNA repair protein radA signature 122 139 9.5E-88 T 12-10-2018 AMJ96_CH01481 a7ce004bc93f73d8c0ab8b9eebf2133d 465 PRINTS PR01874 DNA repair protein radA signature 173 197 9.5E-88 T 12-10-2018 AMJ96_CH01481 a7ce004bc93f73d8c0ab8b9eebf2133d 465 PRINTS PR01874 DNA repair protein radA signature 80 108 9.5E-88 T 12-10-2018 AMJ96_CH01481 a7ce004bc93f73d8c0ab8b9eebf2133d 465 PRINTS PR01874 DNA repair protein radA signature 247 273 9.5E-88 T 12-10-2018 AMJ96_CH01481 a7ce004bc93f73d8c0ab8b9eebf2133d 465 PRINTS PR01874 DNA repair protein radA signature 10 34 9.5E-88 T 12-10-2018 AMJ96_CH01481 a7ce004bc93f73d8c0ab8b9eebf2133d 465 PRINTS PR01874 DNA repair protein radA signature 212 240 9.5E-88 T 12-10-2018 AMJ96_CH01481 a7ce004bc93f73d8c0ab8b9eebf2133d 465 Pfam PF13481 AAA domain 79 221 8.7E-18 T 12-10-2018 AMJ96_CH01481 a7ce004bc93f73d8c0ab8b9eebf2133d 465 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 431 1.4E-167 T 12-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 AMJ96_CH01481 a7ce004bc93f73d8c0ab8b9eebf2133d 465 Hamap MF_01498 DNA repair protein RadA [radA]. 21 453 43.821 T 12-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 AMJ96_CH01828 46afb6ebf338d50b308387204896ee86 214 Pfam PF12973 ChrR Cupin-like domain 116 192 1.1E-12 T 12-10-2018 IPR025979 ChrR-like cupin domain AMJ96_CH01828 46afb6ebf338d50b308387204896ee86 214 Gene3D G3DSA:2.60.120.10 105 197 3.5E-24 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH01828 46afb6ebf338d50b308387204896ee86 214 SUPERFAMILY SSF51182 104 201 2.23E-16 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH01828 46afb6ebf338d50b308387204896ee86 214 Gene3D G3DSA:1.10.10.1320 4 103 3.3E-15 T 12-10-2018 AMJ96_CH01828 46afb6ebf338d50b308387204896ee86 214 TIGRFAM TIGR02451 anti_sig_ChrR: anti-sigma factor, putative, ChrR family 10 209 2.6E-41 T 12-10-2018 IPR012807 Anti-sigma factor ChrR, putative AMJ96_PD00369 e8d0448b0ecd8da8ba4de9a3cd45a70e 155 SUPERFAMILY SSF46785 1 62 6.0E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00369 e8d0448b0ecd8da8ba4de9a3cd45a70e 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 3.7E-9 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_PD00369 e8d0448b0ecd8da8ba4de9a3cd45a70e 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 3.7E-9 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_PD00369 e8d0448b0ecd8da8ba4de9a3cd45a70e 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 18 29 3.7E-9 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_PD00369 e8d0448b0ecd8da8ba4de9a3cd45a70e 155 Pfam PF01037 Lrp/AsnC ligand binding domain 70 142 8.4E-20 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMJ96_PD00369 e8d0448b0ecd8da8ba4de9a3cd45a70e 155 Gene3D G3DSA:3.30.70.920 53 148 3.5E-22 T 12-10-2018 AMJ96_PD00369 e8d0448b0ecd8da8ba4de9a3cd45a70e 155 SMART SM00344 2 111 8.7E-31 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMJ96_PD00369 e8d0448b0ecd8da8ba4de9a3cd45a70e 155 Pfam PF13412 Winged helix-turn-helix DNA-binding 2 49 2.5E-14 T 12-10-2018 AMJ96_PD00369 e8d0448b0ecd8da8ba4de9a3cd45a70e 155 Gene3D G3DSA:1.10.10.10 3 52 3.4E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00369 e8d0448b0ecd8da8ba4de9a3cd45a70e 155 SUPERFAMILY SSF54909 62 151 4.56E-19 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH00790 62e961cecb2f0daee3261976ae5dcbea 368 SUPERFAMILY SSF53383 17 359 4.62E-99 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH00790 62e961cecb2f0daee3261976ae5dcbea 368 Gene3D G3DSA:3.90.1150.10 245 363 1.5E-24 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH00790 62e961cecb2f0daee3261976ae5dcbea 368 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 16 356 5.8E-106 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMJ96_CH00790 62e961cecb2f0daee3261976ae5dcbea 368 PIRSF PIRSF000390 4 364 9.4E-98 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMJ96_CH00790 62e961cecb2f0daee3261976ae5dcbea 368 Gene3D G3DSA:3.40.640.10 1 242 2.3E-84 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH03855 fee025322ef8aa150f8f91daf862bc61 70 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 10 55 14.267 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH03855 fee025322ef8aa150f8f91daf862bc61 70 ProSitePatterns PS01181 Ribosomal protein S21 signature. 11 23 - T 12-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH03855 fee025322ef8aa150f8f91daf862bc61 70 Gene3D G3DSA:1.20.5.1150 14 52 5.0E-10 T 12-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH03855 fee025322ef8aa150f8f91daf862bc61 70 Pfam PF01165 Ribosomal protein S21 2 55 1.8E-20 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH03855 fee025322ef8aa150f8f91daf862bc61 70 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 1 56 8.6E-23 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH03855 fee025322ef8aa150f8f91daf862bc61 70 PRINTS PR00976 Ribosomal protein S21 family signature 35 45 7.8E-6 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH03855 fee025322ef8aa150f8f91daf862bc61 70 PRINTS PR00976 Ribosomal protein S21 family signature 11 20 7.8E-6 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH03855 fee025322ef8aa150f8f91daf862bc61 70 PRINTS PR00976 Ribosomal protein S21 family signature 23 33 7.8E-6 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH03855 fee025322ef8aa150f8f91daf862bc61 70 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 13 41 6.0E-10 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH00644 fdb592a74c64d445ae8a86eb9d20f7f7 305 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 135 165 - T 12-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 AMJ96_CH00644 fdb592a74c64d445ae8a86eb9d20f7f7 305 Pfam PF00701 Dihydrodipicolinate synthetase family 3 300 1.9E-47 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH00644 fdb592a74c64d445ae8a86eb9d20f7f7 305 PIRSF PIRSF001365 1 305 1.8E-80 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH00644 fdb592a74c64d445ae8a86eb9d20f7f7 305 Gene3D G3DSA:3.20.20.70 1 303 2.5E-90 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH00644 fdb592a74c64d445ae8a86eb9d20f7f7 305 SUPERFAMILY SSF51569 1 304 9.0E-78 T 12-10-2018 AMJ96_CH00644 fdb592a74c64d445ae8a86eb9d20f7f7 305 SMART SM01130 3 302 3.7E-80 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH00644 fdb592a74c64d445ae8a86eb9d20f7f7 305 PRINTS PR00146 Dihydrodipicolinate synthase signature 130 147 7.3E-6 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH00644 fdb592a74c64d445ae8a86eb9d20f7f7 305 PRINTS PR00146 Dihydrodipicolinate synthase signature 105 121 7.3E-6 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH00644 fdb592a74c64d445ae8a86eb9d20f7f7 305 PRINTS PR00146 Dihydrodipicolinate synthase signature 37 58 7.3E-6 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH00644 fdb592a74c64d445ae8a86eb9d20f7f7 305 PRINTS PR00146 Dihydrodipicolinate synthase signature 73 91 7.3E-6 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH01906 c454738e35d4b2d813e9b6ec35ba87aa 274 TIGRFAM TIGR00608 radc: DNA repair protein RadC 61 269 2.2E-69 T 12-10-2018 IPR001405 Uncharacterised protein family UPF0758 AMJ96_CH01906 c454738e35d4b2d813e9b6ec35ba87aa 274 Pfam PF04002 RadC-like JAB domain 154 270 5.0E-45 T 12-10-2018 IPR025657 RadC-like JAB domain AMJ96_CH01906 c454738e35d4b2d813e9b6ec35ba87aa 274 SUPERFAMILY SSF102712 199 240 1.15E-5 T 12-10-2018 AMJ96_CH01906 c454738e35d4b2d813e9b6ec35ba87aa 274 SUPERFAMILY SSF47781 70 133 6.23E-7 T 12-10-2018 IPR010994 RuvA domain 2-like AMJ96_CH01906 c454738e35d4b2d813e9b6ec35ba87aa 274 Gene3D G3DSA:1.10.150.20 94 136 2.2E-6 T 12-10-2018 AMJ96_CH01906 c454738e35d4b2d813e9b6ec35ba87aa 274 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 223 228 - T 12-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site AMJ96_CH01906 c454738e35d4b2d813e9b6ec35ba87aa 274 Gene3D G3DSA:3.40.140.10 150 274 7.2E-43 T 12-10-2018 AMJ96_CH00878 d07ff5788866ed7cacf010f8a1e7934c 264 SUPERFAMILY SSF55781 70 252 4.38E-46 T 12-10-2018 AMJ96_CH00878 d07ff5788866ed7cacf010f8a1e7934c 264 SMART SM00346 13 102 4.2E-9 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMJ96_CH00878 d07ff5788866ed7cacf010f8a1e7934c 264 SUPERFAMILY SSF46785 15 84 1.24E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00878 d07ff5788866ed7cacf010f8a1e7934c 264 Pfam PF01614 Bacterial transcriptional regulator 130 252 8.0E-32 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal AMJ96_CH00878 d07ff5788866ed7cacf010f8a1e7934c 264 Gene3D G3DSA:1.10.10.10 12 86 1.4E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00878 d07ff5788866ed7cacf010f8a1e7934c 264 Pfam PF09339 IclR helix-turn-helix domain 16 66 3.4E-10 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMJ96_CH00878 d07ff5788866ed7cacf010f8a1e7934c 264 Gene3D G3DSA:3.30.450.40 87 260 4.5E-55 T 12-10-2018 IPR029016 GAF-like domain superfamily AMJ96_CH03538 4529f765990ded9adfd30e86556c4b23 247 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03538 4529f765990ded9adfd30e86556c4b23 247 Pfam PF00005 ABC transporter 28 171 2.4E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03538 4529f765990ded9adfd30e86556c4b23 247 SUPERFAMILY SSF52540 10 242 1.2E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03538 4529f765990ded9adfd30e86556c4b23 247 Gene3D G3DSA:3.40.50.300 7 245 5.5E-59 T 12-10-2018 AMJ96_CH03538 4529f765990ded9adfd30e86556c4b23 247 PIRSF PIRSF039137 7 245 1.7E-103 T 12-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 AMJ96_CH03538 4529f765990ded9adfd30e86556c4b23 247 SMART SM00382 36 223 3.3E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00039 498ffe18a67458fc37c90bfd779f095c 326 SUPERFAMILY SSF55060 179 316 6.3E-29 T 12-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily AMJ96_PA00039 498ffe18a67458fc37c90bfd779f095c 326 SUPERFAMILY SSF54211 2 173 2.2E-30 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_PA00039 498ffe18a67458fc37c90bfd779f095c 326 Pfam PF00288 GHMP kinases N terminal domain 90 155 8.9E-10 T 12-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 AMJ96_PA00039 498ffe18a67458fc37c90bfd779f095c 326 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 94 105 - T 12-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 AMJ96_PA00039 498ffe18a67458fc37c90bfd779f095c 326 PRINTS PR00960 LmbP protein signature 243 267 8.2E-42 T 12-10-2018 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0016301 KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478 AMJ96_PA00039 498ffe18a67458fc37c90bfd779f095c 326 PRINTS PR00960 LmbP protein signature 93 114 8.2E-42 T 12-10-2018 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0016301 KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478 AMJ96_PA00039 498ffe18a67458fc37c90bfd779f095c 326 PRINTS PR00960 LmbP protein signature 6 21 8.2E-42 T 12-10-2018 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0016301 KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478 AMJ96_PA00039 498ffe18a67458fc37c90bfd779f095c 326 PRINTS PR00960 LmbP protein signature 135 154 8.2E-42 T 12-10-2018 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0016301 KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478 AMJ96_PA00039 498ffe18a67458fc37c90bfd779f095c 326 PRINTS PR00960 LmbP protein signature 271 290 8.2E-42 T 12-10-2018 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0016301 KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478 AMJ96_PA00039 498ffe18a67458fc37c90bfd779f095c 326 PIRSF PIRSF036406 1 326 1.0E-96 T 12-10-2018 IPR014606 D,D-heptose 7-phosphate kinase KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478 AMJ96_PA00039 498ffe18a67458fc37c90bfd779f095c 326 Pfam PF08544 GHMP kinases C terminal 228 307 5.9E-11 T 12-10-2018 IPR013750 GHMP kinase, C-terminal domain AMJ96_PA00039 498ffe18a67458fc37c90bfd779f095c 326 Gene3D G3DSA:3.30.230.120 1 325 1.3E-105 T 12-10-2018 AMJ96_CH03717 3d373670539d43844b4cf9c870f233a8 83 SMART SM00966 1 48 1.2E-10 T 12-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 AMJ96_CH03717 3d373670539d43844b4cf9c870f233a8 83 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 2 41 1.6E-10 T 12-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 AMJ96_CH03717 3d373670539d43844b4cf9c870f233a8 83 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 2 41 4.3E-11 T 12-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 AMJ96_CH03717 3d373670539d43844b4cf9c870f233a8 83 SUPERFAMILY SSF89447 2 45 1.96E-10 T 12-10-2018 IPR037914 SpoVT-AbrB domain superfamily AMJ96_CH03717 3d373670539d43844b4cf9c870f233a8 83 Gene3D G3DSA:2.10.260.10 1 39 1.5E-10 T 12-10-2018 AMJ96_CH03891 a5ca33f97e8f08f904a11065037a479a 309 SMART SM00450 120 221 1.6E-20 T 12-10-2018 IPR001763 Rhodanese-like domain AMJ96_CH03891 a5ca33f97e8f08f904a11065037a479a 309 Gene3D G3DSA:3.30.70.100 2 103 2.5E-33 T 12-10-2018 AMJ96_CH03891 a5ca33f97e8f08f904a11065037a479a 309 Pfam PF00581 Rhodanese-like domain 126 217 2.7E-8 T 12-10-2018 IPR001763 Rhodanese-like domain AMJ96_CH03891 a5ca33f97e8f08f904a11065037a479a 309 Hamap MF_00469 UPF0176 protein YceA [yceA]. 9 261 45.887 T 12-10-2018 IPR020936 Uncharacterised protein family UPF0176 AMJ96_CH03891 a5ca33f97e8f08f904a11065037a479a 309 SUPERFAMILY SSF52821 97 232 4.39E-30 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily AMJ96_CH03891 a5ca33f97e8f08f904a11065037a479a 309 Gene3D G3DSA:3.40.250.10 104 262 4.2E-51 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily AMJ96_PC00123 ade1e89f7d22b89a328d3e7daaf73fb1 127 SUPERFAMILY SSF88723 2 117 9.81E-12 T 12-10-2018 IPR029060 PIN-like domain superfamily AMJ96_PC00123 ade1e89f7d22b89a328d3e7daaf73fb1 127 Gene3D G3DSA:3.40.50.1010 1 119 2.6E-7 T 12-10-2018 AMJ96_PC00123 ade1e89f7d22b89a328d3e7daaf73fb1 127 Pfam PF01850 PIN domain 2 113 1.2E-5 T 12-10-2018 IPR002716 PIN domain AMJ96_PC00231 e6a95a7a06f8878b3fdd11d63d4500cd 272 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 265 1.2E-33 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PC00231 e6a95a7a06f8878b3fdd11d63d4500cd 272 Gene3D G3DSA:3.40.190.10 37 264 1.4E-43 T 12-10-2018 AMJ96_PC00231 e6a95a7a06f8878b3fdd11d63d4500cd 272 Gene3D G3DSA:3.40.190.10 103 227 1.4E-43 T 12-10-2018 AMJ96_PC00231 e6a95a7a06f8878b3fdd11d63d4500cd 272 SMART SM00062 34 266 4.2E-20 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PC00231 e6a95a7a06f8878b3fdd11d63d4500cd 272 SUPERFAMILY SSF53850 33 267 1.87E-32 T 12-10-2018 AMJ96_PD00127 2758b9b62c4289b8f47dcaeef26462b6 540 Gene3D G3DSA:3.40.50.300 1 284 6.1E-63 T 12-10-2018 AMJ96_PD00127 2758b9b62c4289b8f47dcaeef26462b6 540 SUPERFAMILY SSF52540 304 524 5.95E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00127 2758b9b62c4289b8f47dcaeef26462b6 540 SUPERFAMILY SSF52540 2 255 9.5E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00127 2758b9b62c4289b8f47dcaeef26462b6 540 SMART SM00382 26 235 1.4E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00127 2758b9b62c4289b8f47dcaeef26462b6 540 SMART SM00382 349 516 1.2E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00127 2758b9b62c4289b8f47dcaeef26462b6 540 Pfam PF00005 ABC transporter 341 471 9.8E-20 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00127 2758b9b62c4289b8f47dcaeef26462b6 540 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00127 2758b9b62c4289b8f47dcaeef26462b6 540 Pfam PF12848 ABC transporter 229 312 6.1E-26 T 12-10-2018 IPR032781 ABC-transporter extension domain AMJ96_PD00127 2758b9b62c4289b8f47dcaeef26462b6 540 Gene3D G3DSA:3.40.50.300 287 536 1.1E-61 T 12-10-2018 AMJ96_PD00127 2758b9b62c4289b8f47dcaeef26462b6 540 Pfam PF00005 ABC transporter 21 190 3.5E-24 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00127 2758b9b62c4289b8f47dcaeef26462b6 540 ProSitePatterns PS00211 ABC transporters family signature. 443 457 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03760 aeefefd2567ea10cc3e3555a3e066863 365 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 5 363 39.232 T 12-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMJ96_CH03760 aeefefd2567ea10cc3e3555a3e066863 365 Gene3D G3DSA:3.40.50.180 169 364 3.4E-75 T 12-10-2018 IPR035909 Methylesterase CheB, C-terminal AMJ96_CH03760 aeefefd2567ea10cc3e3555a3e066863 365 Pfam PF00072 Response regulator receiver domain 7 109 1.6E-20 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03760 aeefefd2567ea10cc3e3555a3e066863 365 Pfam PF01339 CheB methylesterase 180 357 2.0E-62 T 12-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMJ96_CH03760 aeefefd2567ea10cc3e3555a3e066863 365 Gene3D G3DSA:3.40.50.2300 2 118 3.2E-27 T 12-10-2018 AMJ96_CH03760 aeefefd2567ea10cc3e3555a3e066863 365 SUPERFAMILY SSF52172 3 109 5.27E-26 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH03760 aeefefd2567ea10cc3e3555a3e066863 365 SUPERFAMILY SSF52738 175 359 4.05E-71 T 12-10-2018 IPR035909 Methylesterase CheB, C-terminal AMJ96_CH03760 aeefefd2567ea10cc3e3555a3e066863 365 SMART SM00448 5 117 7.9E-19 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03760 aeefefd2567ea10cc3e3555a3e066863 365 PIRSF PIRSF000876 2 365 1.3E-128 T 12-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMJ96_CH00492 5babf21d5411e512cab05f81c8c5e575 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 47 1.7E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00492 5babf21d5411e512cab05f81c8c5e575 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 55 78 1.7E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00492 5babf21d5411e512cab05f81c8c5e575 216 Gene3D G3DSA:1.10.357.10 29 215 3.4E-36 T 12-10-2018 AMJ96_CH00492 5babf21d5411e512cab05f81c8c5e575 216 SUPERFAMILY SSF46689 20 101 2.33E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH00492 5babf21d5411e512cab05f81c8c5e575 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 34 78 6.6E-13 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH01732 19a195f427071317fbb1c41544c82d04 189 Gene3D G3DSA:3.30.230.10 87 179 5.0E-32 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMJ96_CH01732 19a195f427071317fbb1c41544c82d04 189 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 175 35.177 T 12-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMJ96_CH01732 19a195f427071317fbb1c41544c82d04 189 ProSitePatterns PS00585 Ribosomal protein S5 signature. 39 71 - T 12-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site AMJ96_CH01732 19a195f427071317fbb1c41544c82d04 189 SUPERFAMILY SSF54768 19 87 4.92E-23 T 12-10-2018 AMJ96_CH01732 19a195f427071317fbb1c41544c82d04 189 Pfam PF00333 Ribosomal protein S5, N-terminal domain 23 86 4.5E-28 T 12-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01732 19a195f427071317fbb1c41544c82d04 189 Pfam PF03719 Ribosomal protein S5, C-terminal domain 98 169 1.4E-28 T 12-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01732 19a195f427071317fbb1c41544c82d04 189 SUPERFAMILY SSF54211 91 170 1.97E-25 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_CH01732 19a195f427071317fbb1c41544c82d04 189 Gene3D G3DSA:3.30.160.20 13 83 5.0E-30 T 12-10-2018 AMJ96_CH01732 19a195f427071317fbb1c41544c82d04 189 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 20 172 1.5E-65 T 12-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 AMJ96_CH04113 61a2be19d90cb8bff284103e71c4dcef 270 Gene3D G3DSA:3.40.50.300 2 219 7.1E-58 T 12-10-2018 AMJ96_CH04113 61a2be19d90cb8bff284103e71c4dcef 270 SMART SM00382 30 209 1.3E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04113 61a2be19d90cb8bff284103e71c4dcef 270 SUPERFAMILY SSF52540 5 227 2.6E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04113 61a2be19d90cb8bff284103e71c4dcef 270 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH04113 61a2be19d90cb8bff284103e71c4dcef 270 Pfam PF00005 ABC transporter 21 160 1.9E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00879 9a90a19e416897dd1270702a3117a36a 244 Gene3D G3DSA:3.30.450.80 9 175 4.7E-14 T 12-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily AMJ96_CH00879 9a90a19e416897dd1270702a3117a36a 244 SUPERFAMILY SSF46894 167 243 1.94E-19 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH00879 9a90a19e416897dd1270702a3117a36a 244 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 213 225 4.6E-9 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00879 9a90a19e416897dd1270702a3117a36a 244 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 197 213 4.6E-9 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00879 9a90a19e416897dd1270702a3117a36a 244 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 197 4.6E-9 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00879 9a90a19e416897dd1270702a3117a36a 244 Gene3D G3DSA:1.10.10.10 178 243 8.4E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00879 9a90a19e416897dd1270702a3117a36a 244 Pfam PF00196 Bacterial regulatory proteins, luxR family 181 236 1.9E-17 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00879 9a90a19e416897dd1270702a3117a36a 244 ProSitePatterns PS00622 LuxR-type HTH domain signature. 197 224 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00879 9a90a19e416897dd1270702a3117a36a 244 SUPERFAMILY SSF75516 12 174 6.67E-23 T 12-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily AMJ96_CH00879 9a90a19e416897dd1270702a3117a36a 244 SMART SM00421 180 237 1.0E-21 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00879 9a90a19e416897dd1270702a3117a36a 244 Pfam PF03472 Autoinducer binding domain 25 169 2.2E-20 T 12-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain AMJ96_CH04278 768a4262e6ff0db31e9285f89aeb5eca 513 Pfam PF01435 Peptidase family M48 97 281 5.7E-31 T 12-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMJ96_CH04278 768a4262e6ff0db31e9285f89aeb5eca 513 Gene3D G3DSA:3.30.2010.10 93 176 1.0E-6 T 12-10-2018 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 Gene3D G3DSA:3.30.70.1430 38 814 0.0 T 12-10-2018 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 Gene3D G3DSA:1.20.1640.10 8 509 0.0 T 12-10-2018 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 Pfam PF00873 AcrB/AcrD/AcrF family 1 1023 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 Gene3D G3DSA:3.30.70.1440 666 862 0.0 T 12-10-2018 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 SUPERFAMILY SSF82866 829 1023 9.55E-43 T 12-10-2018 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 SUPERFAMILY SSF82693 562 668 1.15E-28 T 12-10-2018 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 SUPERFAMILY SSF82714 181 271 7.72E-22 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 Gene3D G3DSA:3.30.2090.10 178 274 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 Gene3D G3DSA:3.30.2090.10 718 806 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 SUPERFAMILY SSF82693 669 853 1.46E-18 T 12-10-2018 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 SUPERFAMILY SSF82693 38 128 3.35E-24 T 12-10-2018 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 SUPERFAMILY SSF82866 295 496 4.45E-48 T 12-10-2018 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 SUPERFAMILY SSF82693 135 329 1.2E-22 T 12-10-2018 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 PRINTS PR00702 Acriflavin resistance protein family signature 390 414 8.8E-104 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 8.8E-104 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 PRINTS PR00702 Acriflavin resistance protein family signature 444 467 8.8E-104 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 PRINTS PR00702 Acriflavin resistance protein family signature 469 492 8.8E-104 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 PRINTS PR00702 Acriflavin resistance protein family signature 335 358 8.8E-104 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 8.8E-104 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 PRINTS PR00702 Acriflavin resistance protein family signature 549 566 8.8E-104 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 PRINTS PR00702 Acriflavin resistance protein family signature 618 632 8.8E-104 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 PRINTS PR00702 Acriflavin resistance protein family signature 362 383 8.8E-104 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 Gene3D G3DSA:1.20.1640.10 510 1019 0.0 T 12-10-2018 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 SUPERFAMILY SSF82714 719 804 2.49E-18 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 Gene3D G3DSA:3.30.70.1430 564 665 0.0 T 12-10-2018 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 Gene3D G3DSA:3.30.70.1320 132 331 0.0 T 12-10-2018 AMJ96_CH03647 8d5bf51ed7cee0e19481f10fe5321734 1036 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1033 0.0 T 12-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 AMJ96_PD00242 3cec1f88a1a590b310692d6d3daf1678 343 SUPERFAMILY SSF51735 111 295 6.26E-37 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00242 3cec1f88a1a590b310692d6d3daf1678 343 Gene3D G3DSA:3.40.50.720 13 312 6.2E-117 T 12-10-2018 AMJ96_PD00242 3cec1f88a1a590b310692d6d3daf1678 343 Gene3D G3DSA:3.40.50.720 109 295 6.2E-117 T 12-10-2018 AMJ96_PD00242 3cec1f88a1a590b310692d6d3daf1678 343 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 118 294 9.0E-38 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMJ96_PD00242 3cec1f88a1a590b310692d6d3daf1678 343 SUPERFAMILY SSF52283 32 138 5.1E-9 T 12-10-2018 AMJ96_CH04018 da405d774d996c9b918aeb2f4fedafeb 431 SUPERFAMILY SSF103473 14 419 2.49E-56 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH04018 da405d774d996c9b918aeb2f4fedafeb 431 Pfam PF07690 Major Facilitator Superfamily 26 382 6.7E-35 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH04018 da405d774d996c9b918aeb2f4fedafeb 431 Gene3D G3DSA:1.20.1250.20 237 423 7.3E-18 T 12-10-2018 AMJ96_CH04018 da405d774d996c9b918aeb2f4fedafeb 431 Gene3D G3DSA:1.20.1250.20 12 212 2.0E-26 T 12-10-2018 AMJ96_CH03699 46ec7b3b33d76fbb89a25dd21a5c9a62 329 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 205 319 1.1E-40 T 12-10-2018 IPR014162 Cell division coordinator CpoB, C-terminal AMJ96_CH03699 46ec7b3b33d76fbb89a25dd21a5c9a62 329 SUPERFAMILY SSF48452 210 316 2.78E-12 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03699 46ec7b3b33d76fbb89a25dd21a5c9a62 329 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 1 325 17.421 T 12-10-2018 IPR034706 Cell division coordinator CpoB GO:0051301 AMJ96_CH03699 46ec7b3b33d76fbb89a25dd21a5c9a62 329 Pfam PF13174 Tetratricopeptide repeat 282 311 1.3E-4 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH03699 46ec7b3b33d76fbb89a25dd21a5c9a62 329 Pfam PF13432 Tetratricopeptide repeat 218 271 9.1E-10 T 12-10-2018 AMJ96_CH03699 46ec7b3b33d76fbb89a25dd21a5c9a62 329 Gene3D G3DSA:1.25.40.10 206 326 1.7E-25 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_PD00593 cf57e6538f7a644336cb3e5b9ae35c6d 477 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 273 284 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMJ96_PD00593 cf57e6538f7a644336cb3e5b9ae35c6d 477 SUPERFAMILY SSF53720 2 473 1.13E-156 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_PD00593 cf57e6538f7a644336cb3e5b9ae35c6d 477 Pfam PF00171 Aldehyde dehydrogenase family 15 472 7.6E-162 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_PD00593 cf57e6538f7a644336cb3e5b9ae35c6d 477 Gene3D G3DSA:3.40.605.10 19 471 5.1E-159 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_PD00593 cf57e6538f7a644336cb3e5b9ae35c6d 477 Gene3D G3DSA:3.40.309.10 249 441 5.1E-159 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_PD00593 cf57e6538f7a644336cb3e5b9ae35c6d 477 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMJ96_CH02695 07d3c4ce62acce8d868074e211bcbe28 131 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 7 129 1.8E-33 T 12-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 AMJ96_CH02695 07d3c4ce62acce8d868074e211bcbe28 131 Pfam PF02566 OsmC-like protein 37 129 2.8E-13 T 12-10-2018 IPR003718 OsmC/Ohr family AMJ96_CH02695 07d3c4ce62acce8d868074e211bcbe28 131 SUPERFAMILY SSF82784 3 130 5.76E-31 T 12-10-2018 IPR036102 OsmC/Ohr superfamily AMJ96_CH02695 07d3c4ce62acce8d868074e211bcbe28 131 Gene3D G3DSA:3.30.300.20 40 131 2.9E-27 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta AMJ96_CH02695 07d3c4ce62acce8d868074e211bcbe28 131 Gene3D G3DSA:2.20.25.10 1 39 8.1E-12 T 12-10-2018 AMJ96_PD00273 414f3a1fde5abe2e603b1e69cb524e04 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 214 2.7E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00273 414f3a1fde5abe2e603b1e69cb524e04 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 16 110 7.6E-22 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_PD00273 414f3a1fde5abe2e603b1e69cb524e04 219 SUPERFAMILY SSF161098 16 201 1.7E-39 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00273 414f3a1fde5abe2e603b1e69cb524e04 219 Gene3D G3DSA:1.10.3720.10 8 216 1.8E-46 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02977 e13caa14bd347901cd0353b07a751ac2 221 Pfam PF13441 YMGG-like Gly-zipper 32 79 4.6E-8 T 12-10-2018 IPR027367 YMGG-like Gly-zipper AMJ96_CH02977 e13caa14bd347901cd0353b07a751ac2 221 SUPERFAMILY SSF103088 102 218 6.15E-39 T 12-10-2018 IPR036737 OmpA-like domain superfamily AMJ96_CH02977 e13caa14bd347901cd0353b07a751ac2 221 Gene3D G3DSA:3.30.1330.60 78 220 1.1E-49 T 12-10-2018 IPR036737 OmpA-like domain superfamily AMJ96_CH02977 e13caa14bd347901cd0353b07a751ac2 221 Pfam PF00691 OmpA family 114 209 3.2E-20 T 12-10-2018 IPR006665 OmpA-like domain AMJ96_CH02977 e13caa14bd347901cd0353b07a751ac2 221 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 178 197 1.7E-7 T 12-10-2018 AMJ96_CH02977 e13caa14bd347901cd0353b07a751ac2 221 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 160 177 1.7E-7 T 12-10-2018 AMJ96_CH02977 e13caa14bd347901cd0353b07a751ac2 221 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 198 218 1.7E-7 T 12-10-2018 AMJ96_CH02977 e13caa14bd347901cd0353b07a751ac2 221 PRINTS PR01021 OMPA domain signature 115 137 5.7E-12 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMJ96_CH02977 e13caa14bd347901cd0353b07a751ac2 221 PRINTS PR01021 OMPA domain signature 160 176 5.7E-12 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMJ96_CH02977 e13caa14bd347901cd0353b07a751ac2 221 PRINTS PR01021 OMPA domain signature 145 160 5.7E-12 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMJ96_PD00669 d3531961c8b392410527f9c97dbe0878 132 SUPERFAMILY SSF88723 1 116 1.46E-13 T 12-10-2018 IPR029060 PIN-like domain superfamily AMJ96_PD00669 d3531961c8b392410527f9c97dbe0878 132 Pfam PF01850 PIN domain 5 117 9.0E-7 T 12-10-2018 IPR002716 PIN domain AMJ96_CH01460 5573f6d06039f03327c510c77d385324 203 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 116 129 - T 12-10-2018 IPR033135 ClpP, histidine active site AMJ96_CH01460 5573f6d06039f03327c510c77d385324 203 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 7 197 41.033 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMJ96_CH01460 5573f6d06039f03327c510c77d385324 203 Gene3D G3DSA:3.90.226.10 1 200 4.8E-85 T 12-10-2018 AMJ96_CH01460 5573f6d06039f03327c510c77d385324 203 SUPERFAMILY SSF52096 15 199 1.12E-71 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_CH01460 5573f6d06039f03327c510c77d385324 203 Pfam PF00574 Clp protease 17 195 3.3E-81 T 12-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AMJ96_CH01460 5573f6d06039f03327c510c77d385324 203 PRINTS PR00127 Clp protease catalytic subunit P signature 94 111 1.1E-47 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMJ96_CH01460 5573f6d06039f03327c510c77d385324 203 PRINTS PR00127 Clp protease catalytic subunit P signature 63 83 1.1E-47 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMJ96_CH01460 5573f6d06039f03327c510c77d385324 203 PRINTS PR00127 Clp protease catalytic subunit P signature 115 134 1.1E-47 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMJ96_CH01460 5573f6d06039f03327c510c77d385324 203 PRINTS PR00127 Clp protease catalytic subunit P signature 23 38 1.1E-47 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMJ96_CH01460 5573f6d06039f03327c510c77d385324 203 PRINTS PR00127 Clp protease catalytic subunit P signature 172 191 1.1E-47 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMJ96_PC00339 e675e2c0e58b956217bf3759217a2a71 504 TIGRFAM TIGR03417 chol_sulfatase: choline-sulfatase 3 501 1.3E-269 T 12-10-2018 IPR017785 Choline-sulfatase AMJ96_PC00339 e675e2c0e58b956217bf3759217a2a71 504 Gene3D G3DSA:3.40.720.10 3 460 4.6E-109 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 AMJ96_PC00339 e675e2c0e58b956217bf3759217a2a71 504 SUPERFAMILY SSF53649 3 439 1.31E-110 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 AMJ96_PC00339 e675e2c0e58b956217bf3759217a2a71 504 ProSitePatterns PS00149 Sulfatases signature 2. 92 102 - T 12-10-2018 IPR024607 Sulfatase, conserved site AMJ96_PC00339 e675e2c0e58b956217bf3759217a2a71 504 Pfam PF00884 Sulfatase 4 347 4.3E-50 T 12-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 AMJ96_PC00339 e675e2c0e58b956217bf3759217a2a71 504 Pfam PF12411 Choline sulfatase enzyme C terminal 449 500 8.8E-23 T 12-10-2018 IPR025863 Choline sulfatase enzyme C-terminal domain AMJ96_CH02692 08405347a4b49a46dd658c4da7eb85c9 165 SMART SM00347 46 156 2.1E-15 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH02692 08405347a4b49a46dd658c4da7eb85c9 165 SUPERFAMILY SSF46785 19 124 1.65E-29 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02692 08405347a4b49a46dd658c4da7eb85c9 165 Gene3D G3DSA:1.10.10.10 17 161 3.6E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02692 08405347a4b49a46dd658c4da7eb85c9 165 Pfam PF01047 MarR family 53 111 1.3E-13 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH02692 08405347a4b49a46dd658c4da7eb85c9 165 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 102 1.4E-5 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH02692 08405347a4b49a46dd658c4da7eb85c9 165 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 86 1.4E-5 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH02692 08405347a4b49a46dd658c4da7eb85c9 165 PRINTS PR00598 Bacterial regulatory protein MarR family signature 106 122 1.4E-5 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_PD00326 67f899670daa436d69d8f84f6e6cd7db 645 Gene3D G3DSA:3.10.105.10 360 606 1.9E-48 T 12-10-2018 AMJ96_PD00326 67f899670daa436d69d8f84f6e6cd7db 645 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 109 521 9.6E-74 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_PD00326 67f899670daa436d69d8f84f6e6cd7db 645 Gene3D G3DSA:3.40.190.10 58 359 1.0E-46 T 12-10-2018 AMJ96_PD00326 67f899670daa436d69d8f84f6e6cd7db 645 PIRSF PIRSF002741 266 627 1.0E-27 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_PD00326 67f899670daa436d69d8f84f6e6cd7db 645 PIRSF PIRSF002741 76 226 6.6E-24 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_PD00326 67f899670daa436d69d8f84f6e6cd7db 645 SUPERFAMILY SSF53850 75 630 1.14E-86 T 12-10-2018 AMJ96_CH00771 bc9901bfaa6256badc91904e8a3612bf 293 Pfam PF03466 LysR substrate binding domain 89 284 2.1E-32 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH00771 bc9901bfaa6256badc91904e8a3612bf 293 SUPERFAMILY SSF46785 1 111 2.5E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00771 bc9901bfaa6256badc91904e8a3612bf 293 Gene3D G3DSA:3.40.190.290 90 284 7.6E-35 T 12-10-2018 AMJ96_CH00771 bc9901bfaa6256badc91904e8a3612bf 293 Gene3D G3DSA:1.10.10.10 1 84 5.8E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00771 bc9901bfaa6256badc91904e8a3612bf 293 SUPERFAMILY SSF53850 89 287 2.53E-34 T 12-10-2018 AMJ96_CH00771 bc9901bfaa6256badc91904e8a3612bf 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 6.7E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00117 48db4cc254352adef3592696b3b0881c 427 SUPERFAMILY SSF46785 88 161 7.27E-6 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00117 48db4cc254352adef3592696b3b0881c 427 Pfam PF11800 Replication protein C C-terminal region 191 419 8.3E-81 T 12-10-2018 IPR021760 Replication protein-C C-terminal AMJ96_PD00117 48db4cc254352adef3592696b3b0881c 427 Pfam PF03428 Replication protein C N-terminal domain 10 184 3.0E-76 T 12-10-2018 IPR005090 Replication protein C AMJ96_CH02774 dcd2ae7af30224664ff4c3b4429a0434 239 SUPERFAMILY SSF81452 21 239 1.44E-52 T 12-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02774 dcd2ae7af30224664ff4c3b4429a0434 239 Pfam PF00510 Cytochrome c oxidase subunit III 41 239 1.2E-18 T 12-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02774 dcd2ae7af30224664ff4c3b4429a0434 239 Gene3D G3DSA:1.20.120.80 34 239 8.4E-56 T 12-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02195 14015bacecbc318b509702f4d778a012 226 SUPERFAMILY SSF52833 10 207 4.64E-18 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH02195 14015bacecbc318b509702f4d778a012 226 Pfam PF00578 AhpC/TSA family 13 118 1.6E-10 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMJ96_CH03660 1faaaae886333032e9b6d0107e4c0227 440 SUPERFAMILY SSF56176 24 173 8.41E-36 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMJ96_CH03660 1faaaae886333032e9b6d0107e4c0227 440 Gene3D G3DSA:3.30.465.10 59 175 1.7E-26 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMJ96_CH03660 1faaaae886333032e9b6d0107e4c0227 440 Pfam PF01565 FAD binding domain 28 143 1.9E-18 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMJ96_CH03609 c63ea94a3762e0143f16eb8ddd4694e4 340 Pfam PF13704 Glycosyl transferase family 2 48 136 2.0E-27 T 12-10-2018 AMJ96_CH03609 c63ea94a3762e0143f16eb8ddd4694e4 340 SUPERFAMILY SSF53448 43 136 1.35E-5 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03609 c63ea94a3762e0143f16eb8ddd4694e4 340 Gene3D G3DSA:3.90.550.10 18 159 1.3E-5 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00014 845db115a08637172084ea0dc6797d58 94 Pfam PF09981 Uncharacterized protein conserved in bacteria (DUF2218) 6 93 9.1E-34 T 12-10-2018 IPR014543 Uncharacterised conserved protein UCP028291 AMJ96_CH00014 845db115a08637172084ea0dc6797d58 94 Gene3D G3DSA:3.30.310.50 1 94 3.6E-34 T 12-10-2018 AMJ96_CH00014 845db115a08637172084ea0dc6797d58 94 PIRSF PIRSF028291 1 94 2.8E-34 T 12-10-2018 IPR014543 Uncharacterised conserved protein UCP028291 AMJ96_PD00656 7f237c0b25b66b2e2cbd9ac53f7f1b61 638 Gene3D G3DSA:3.40.50.300 364 628 2.7E-35 T 12-10-2018 AMJ96_PD00656 7f237c0b25b66b2e2cbd9ac53f7f1b61 638 SUPERFAMILY SSF52540 198 625 1.13E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00656 7f237c0b25b66b2e2cbd9ac53f7f1b61 638 TIGRFAM TIGR02767 TraG-Ti: Ti-type conjugative transfer system protein TraG 11 633 0.0 T 12-10-2018 IPR014135 Ti-type conjugative transfer system, TraG AMJ96_PD00656 7f237c0b25b66b2e2cbd9ac53f7f1b61 638 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 161 633 1.1E-93 T 12-10-2018 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 AMJ96_CH00219 65e3b2f6ee52a1eaeddd79e5be6316f9 463 SUPERFAMILY SSF52949 37 128 1.82E-5 T 12-10-2018 AMJ96_CH00219 65e3b2f6ee52a1eaeddd79e5be6316f9 463 PRINTS PR00481 Cytosol aminopeptidase signature 226 243 5.9E-45 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMJ96_CH00219 65e3b2f6ee52a1eaeddd79e5be6316f9 463 PRINTS PR00481 Cytosol aminopeptidase signature 335 350 5.9E-45 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMJ96_CH00219 65e3b2f6ee52a1eaeddd79e5be6316f9 463 PRINTS PR00481 Cytosol aminopeptidase signature 248 269 5.9E-45 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMJ96_CH00219 65e3b2f6ee52a1eaeddd79e5be6316f9 463 PRINTS PR00481 Cytosol aminopeptidase signature 285 306 5.9E-45 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMJ96_CH00219 65e3b2f6ee52a1eaeddd79e5be6316f9 463 PRINTS PR00481 Cytosol aminopeptidase signature 307 327 5.9E-45 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AMJ96_CH00219 65e3b2f6ee52a1eaeddd79e5be6316f9 463 Gene3D G3DSA:3.40.220.10 13 135 1.5E-22 T 12-10-2018 AMJ96_CH00219 65e3b2f6ee52a1eaeddd79e5be6316f9 463 Gene3D G3DSA:3.40.630.10 138 462 1.9E-118 T 12-10-2018 AMJ96_CH00219 65e3b2f6ee52a1eaeddd79e5be6316f9 463 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 152 454 2.5E-104 T 12-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMJ96_CH00219 65e3b2f6ee52a1eaeddd79e5be6316f9 463 SUPERFAMILY SSF53187 148 459 1.6E-105 T 12-10-2018 AMJ96_CH00219 65e3b2f6ee52a1eaeddd79e5be6316f9 463 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 311 318 - T 12-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AMJ96_CH02254 11110f42439962eb5ff6b71f08ec68ee 194 Gene3D G3DSA:3.40.109.10 6 171 8.3E-40 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMJ96_CH02254 11110f42439962eb5ff6b71f08ec68ee 194 PIRSF PIRSF000232 2 193 8.7E-56 T 12-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like AMJ96_CH02254 11110f42439962eb5ff6b71f08ec68ee 194 SUPERFAMILY SSF55469 5 190 6.81E-34 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMJ96_CH02254 11110f42439962eb5ff6b71f08ec68ee 194 Pfam PF00881 Nitroreductase family 13 169 5.5E-23 T 12-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AMJ96_CH01062 462ba6157e15bf7794dd965400b8f0d3 215 Gene3D G3DSA:2.10.109.10 87 211 1.1E-11 T 12-10-2018 AMJ96_CH01062 462ba6157e15bf7794dd965400b8f0d3 215 SUPERFAMILY SSF51306 91 211 1.41E-12 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AMJ96_CH02180 67682b463b74b9b6eeec122e45f9624d 345 Gene3D G3DSA:3.40.47.10 1 187 2.3E-59 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH02180 67682b463b74b9b6eeec122e45f9624d 345 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 86 102 - T 12-10-2018 IPR018201 Beta-ketoacyl synthase, active site AMJ96_CH02180 67682b463b74b9b6eeec122e45f9624d 345 SUPERFAMILY SSF53901 148 344 1.08E-60 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH02180 67682b463b74b9b6eeec122e45f9624d 345 SUPERFAMILY SSF53901 1 186 5.55E-54 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH02180 67682b463b74b9b6eeec122e45f9624d 345 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 179 7.5E-41 T 12-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AMJ96_CH02180 67682b463b74b9b6eeec122e45f9624d 345 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 187 300 2.2E-32 T 12-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AMJ96_CH02180 67682b463b74b9b6eeec122e45f9624d 345 SMART SM00825 Beta-ketoacyl synthase 1 344 7.3E-9 T 12-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AMJ96_CH02180 67682b463b74b9b6eeec122e45f9624d 345 Gene3D G3DSA:3.40.47.10 193 345 1.2E-46 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH03526 87e380e6c3f691c2b43aac6de9703925 273 Hamap MF_01384 Urease accessory protein UreD [ureD]. 15 262 25.545 T 12-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 AMJ96_CH03526 87e380e6c3f691c2b43aac6de9703925 273 Pfam PF01774 UreD urease accessory protein 54 251 4.7E-43 T 12-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 AMJ96_PC00294 7019451115983ae9ac5943a388719021 259 Pfam PF00005 ABC transporter 21 170 7.3E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00294 7019451115983ae9ac5943a388719021 259 SUPERFAMILY SSF52540 4 233 3.97E-66 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00294 7019451115983ae9ac5943a388719021 259 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00294 7019451115983ae9ac5943a388719021 259 Gene3D G3DSA:3.40.50.300 2 257 7.8E-75 T 12-10-2018 AMJ96_PC00294 7019451115983ae9ac5943a388719021 259 SMART SM00382 30 218 7.8E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00120 6ce02af91508e766bbc6a1d759621abf 424 Pfam PF04932 O-Antigen ligase 198 349 1.4E-18 T 12-10-2018 IPR007016 O-antigen ligase-related AMJ96_CH02745 7cbf63be68416664c1d688a3f7cadade 125 SUPERFAMILY SSF46785 8 122 1.25E-34 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02745 7cbf63be68416664c1d688a3f7cadade 125 Gene3D G3DSA:1.10.10.10 1 123 2.0E-42 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02745 7cbf63be68416664c1d688a3f7cadade 125 Pfam PF01638 HxlR-like helix-turn-helix 24 111 3.9E-27 T 12-10-2018 IPR002577 Helix-turn-helix, HxlR type AMJ96_CH01417 e5567f56a41db97ac1eb2c06a8eb1354 1506 Pfam PF13313 Domain of unknown function (DUF4082) 836 981 1.3E-48 T 12-10-2018 IPR025141 Domain of unknown function DUF4082 AMJ96_CH01417 e5567f56a41db97ac1eb2c06a8eb1354 1506 Pfam PF13313 Domain of unknown function (DUF4082) 1093 1238 6.3E-51 T 12-10-2018 IPR025141 Domain of unknown function DUF4082 AMJ96_CH01417 e5567f56a41db97ac1eb2c06a8eb1354 1506 Pfam PF13313 Domain of unknown function (DUF4082) 1351 1496 1.2E-54 T 12-10-2018 IPR025141 Domain of unknown function DUF4082 AMJ96_CH01417 e5567f56a41db97ac1eb2c06a8eb1354 1506 SUPERFAMILY SSF81296 735 818 7.0E-15 T 12-10-2018 IPR014756 Immunoglobulin E-set AMJ96_CH01417 e5567f56a41db97ac1eb2c06a8eb1354 1506 Gene3D G3DSA:2.60.40.10 1003 1087 9.6E-6 T 12-10-2018 IPR013783 Immunoglobulin-like fold AMJ96_CH01417 e5567f56a41db97ac1eb2c06a8eb1354 1506 Gene3D G3DSA:2.60.40.10 1244 1344 3.2E-5 T 12-10-2018 IPR013783 Immunoglobulin-like fold AMJ96_CH01417 e5567f56a41db97ac1eb2c06a8eb1354 1506 Gene3D G3DSA:2.60.40.650 735 829 3.6E-10 T 12-10-2018 AMJ96_CH01683 988befcfa4cfc7461b6339765d1738cc 257 SUPERFAMILY SSF111331 27 242 6.67E-54 T 12-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily AMJ96_CH01683 988befcfa4cfc7461b6339765d1738cc 257 Pfam PF01513 ATP-NAD kinase 34 204 3.1E-14 T 12-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AMJ96_CH01683 988befcfa4cfc7461b6339765d1738cc 257 Gene3D G3DSA:2.60.200.30 102 232 2.0E-36 T 12-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AMJ96_CH01683 988befcfa4cfc7461b6339765d1738cc 257 Hamap MF_00361 NAD kinase [nadK]. 6 256 19.441 T 12-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AMJ96_CH01683 988befcfa4cfc7461b6339765d1738cc 257 Gene3D G3DSA:3.40.50.10330 31 249 2.0E-36 T 12-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 AMJ96_CH01544 723ca80ab8a95261539caa9b3d190cad 152 SUPERFAMILY SSF55961 3 146 7.13E-32 T 12-10-2018 AMJ96_CH01544 723ca80ab8a95261539caa9b3d190cad 152 Gene3D G3DSA:3.30.530.20 3 151 3.0E-33 T 12-10-2018 IPR023393 START-like domain superfamily AMJ96_CH01544 723ca80ab8a95261539caa9b3d190cad 152 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 15 143 1.9E-22 T 12-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like AMJ96_CH00840 29d9e757468756925271c4222b049904 349 Pfam PF00248 Aldo/keto reductase family 15 322 4.0E-81 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_CH00840 29d9e757468756925271c4222b049904 349 SUPERFAMILY SSF51430 1 321 5.63E-106 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH00840 29d9e757468756925271c4222b049904 349 Gene3D G3DSA:3.20.20.100 1 343 7.7E-125 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH00929 c757bcc3b874e092f8ea8e7edf98301f 272 Pfam PF00106 short chain dehydrogenase 8 188 7.6E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00929 c757bcc3b874e092f8ea8e7edf98301f 272 Gene3D G3DSA:3.40.50.720 6 265 3.8E-70 T 12-10-2018 AMJ96_CH00929 c757bcc3b874e092f8ea8e7edf98301f 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 1.5E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00929 c757bcc3b874e092f8ea8e7edf98301f 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 1.5E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00929 c757bcc3b874e092f8ea8e7edf98301f 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 164 1.5E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00929 c757bcc3b874e092f8ea8e7edf98301f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 183 3.4E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00929 c757bcc3b874e092f8ea8e7edf98301f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 3.4E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00929 c757bcc3b874e092f8ea8e7edf98301f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 3.4E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00929 c757bcc3b874e092f8ea8e7edf98301f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 3.4E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00929 c757bcc3b874e092f8ea8e7edf98301f 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.4E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00929 c757bcc3b874e092f8ea8e7edf98301f 272 SUPERFAMILY SSF51735 2 265 2.8E-65 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00929 c757bcc3b874e092f8ea8e7edf98301f 272 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 169 0.0028 T 12-10-2018 AMJ96_PC00183 df89fb234e423ed3abb632fce59c9374 991 SUPERFAMILY SSF52540 196 447 7.16E-12 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00183 df89fb234e423ed3abb632fce59c9374 991 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 14 176 5.0E-21 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_PC00183 df89fb234e423ed3abb632fce59c9374 991 SUPERFAMILY SSF55073 10 185 5.49E-34 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_PC00183 df89fb234e423ed3abb632fce59c9374 991 SMART SM00044 1 168 2.6E-6 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_PC00183 df89fb234e423ed3abb632fce59c9374 991 Gene3D G3DSA:3.30.70.1230 11 197 6.5E-38 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_PC00183 df89fb234e423ed3abb632fce59c9374 991 Pfam PF13191 AAA ATPase domain 205 393 1.4E-18 T 12-10-2018 AMJ96_PC00183 df89fb234e423ed3abb632fce59c9374 991 Gene3D G3DSA:1.25.40.10 785 990 9.9E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH00542 09072dc81df7d4b465eeaae8c3038ded 1036 SUPERFAMILY SSF82714 186 268 2.09E-13 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH00542 09072dc81df7d4b465eeaae8c3038ded 1036 SUPERFAMILY SSF82866 791 1014 6.93E-43 T 12-10-2018 AMJ96_CH00542 09072dc81df7d4b465eeaae8c3038ded 1036 Gene3D G3DSA:3.30.70.1320 139 328 4.1E-231 T 12-10-2018 AMJ96_CH00542 09072dc81df7d4b465eeaae8c3038ded 1036 SUPERFAMILY SSF82866 297 490 1.03E-33 T 12-10-2018 AMJ96_CH00542 09072dc81df7d4b465eeaae8c3038ded 1036 Gene3D G3DSA:1.20.1640.10 14 503 4.1E-231 T 12-10-2018 AMJ96_CH00542 09072dc81df7d4b465eeaae8c3038ded 1036 Gene3D G3DSA:3.30.70.1430 42 802 4.1E-231 T 12-10-2018 AMJ96_CH00542 09072dc81df7d4b465eeaae8c3038ded 1036 Gene3D G3DSA:3.30.2090.10 181 270 4.1E-231 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH00542 09072dc81df7d4b465eeaae8c3038ded 1036 SUPERFAMILY SSF82693 554 604 6.1E-7 T 12-10-2018 AMJ96_CH00542 09072dc81df7d4b465eeaae8c3038ded 1036 SUPERFAMILY SSF82714 707 792 6.41E-12 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH00542 09072dc81df7d4b465eeaae8c3038ded 1036 Pfam PF00873 AcrB/AcrD/AcrF family 6 1007 1.7E-138 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH00542 09072dc81df7d4b465eeaae8c3038ded 1036 Gene3D G3DSA:3.30.2090.10 706 794 4.1E-231 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_CH00542 09072dc81df7d4b465eeaae8c3038ded 1036 Gene3D G3DSA:3.30.70.1440 655 854 4.1E-231 T 12-10-2018 AMJ96_CH00542 09072dc81df7d4b465eeaae8c3038ded 1036 Gene3D G3DSA:1.20.1640.10 504 1006 4.1E-231 T 12-10-2018 AMJ96_CH00542 09072dc81df7d4b465eeaae8c3038ded 1036 SUPERFAMILY SSF82693 42 136 2.3E-17 T 12-10-2018 AMJ96_CH00542 09072dc81df7d4b465eeaae8c3038ded 1036 Gene3D G3DSA:3.30.70.1430 555 654 4.1E-231 T 12-10-2018 AMJ96_CH00542 09072dc81df7d4b465eeaae8c3038ded 1036 SUPERFAMILY SSF82693 141 325 4.19E-16 T 12-10-2018 AMJ96_CH00542 09072dc81df7d4b465eeaae8c3038ded 1036 PRINTS PR00702 Acriflavin resistance protein family signature 358 379 1.8E-18 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH00542 09072dc81df7d4b465eeaae8c3038ded 1036 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 1.8E-18 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH00542 09072dc81df7d4b465eeaae8c3038ded 1036 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 1.8E-18 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH00542 09072dc81df7d4b465eeaae8c3038ded 1036 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 1.8E-18 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03265 f0a0b387d42c335501f1429decf01af1 194 Pfam PF07298 NnrU protein 4 191 2.2E-60 T 12-10-2018 IPR009915 NnrU domain AMJ96_CH02553 4585948438d2bbd23b493509e162a19d 301 Gene3D G3DSA:3.90.245.10 1 301 2.5E-83 T 12-10-2018 IPR036452 Ribonucleoside hydrolase-like AMJ96_CH02553 4585948438d2bbd23b493509e162a19d 301 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 1 291 4.2E-65 T 12-10-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AMJ96_CH02553 4585948438d2bbd23b493509e162a19d 301 SUPERFAMILY SSF53590 1 298 3.01E-76 T 12-10-2018 IPR036452 Ribonucleoside hydrolase-like AMJ96_CH03321 10e56bc5247e06947bdc89d52037c7ea 512 Gene3D G3DSA:3.40.50.300 1 239 1.7E-52 T 12-10-2018 AMJ96_CH03321 10e56bc5247e06947bdc89d52037c7ea 512 SUPERFAMILY SSF52540 246 495 1.12E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03321 10e56bc5247e06947bdc89d52037c7ea 512 SMART SM00382 289 485 0.0015 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03321 10e56bc5247e06947bdc89d52037c7ea 512 SMART SM00382 30 219 1.6E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03321 10e56bc5247e06947bdc89d52037c7ea 512 ProSitePatterns PS00211 ABC transporters family signature. 409 423 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03321 10e56bc5247e06947bdc89d52037c7ea 512 Pfam PF00005 ABC transporter 280 436 3.7E-17 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03321 10e56bc5247e06947bdc89d52037c7ea 512 SUPERFAMILY SSF52540 4 224 7.99E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03321 10e56bc5247e06947bdc89d52037c7ea 512 Gene3D G3DSA:3.40.50.300 254 510 4.0E-41 T 12-10-2018 AMJ96_CH03321 10e56bc5247e06947bdc89d52037c7ea 512 Pfam PF00005 ABC transporter 21 172 1.5E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00288 cb9818e9fd2ece719072fb3f0b4b6eee 260 Gene3D G3DSA:3.40.50.300 14 259 2.4E-55 T 12-10-2018 AMJ96_PC00288 cb9818e9fd2ece719072fb3f0b4b6eee 260 SUPERFAMILY SSF52540 15 253 3.32E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00288 cb9818e9fd2ece719072fb3f0b4b6eee 260 Pfam PF00005 ABC transporter 32 187 2.1E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00288 cb9818e9fd2ece719072fb3f0b4b6eee 260 SMART SM00382 40 219 1.5E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00288 cb9818e9fd2ece719072fb3f0b4b6eee 260 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 234 256 1.9E-5 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMJ96_CH02815 1b9c6e7a78d52888127a235a35df2ba7 199 Gene3D G3DSA:1.10.357.10 12 199 7.9E-42 T 12-10-2018 AMJ96_CH02815 1b9c6e7a78d52888127a235a35df2ba7 199 ProSitePatterns PS01081 TetR-type HTH domain signature. 34 65 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMJ96_CH02815 1b9c6e7a78d52888127a235a35df2ba7 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 67 2.7E-16 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH02815 1b9c6e7a78d52888127a235a35df2ba7 199 SUPERFAMILY SSF46689 10 80 3.07E-18 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02815 1b9c6e7a78d52888127a235a35df2ba7 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 4.9E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH02815 1b9c6e7a78d52888127a235a35df2ba7 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 4.9E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00228 0d4befe0029be425f5d2316d3f87f87f 975 SUPERFAMILY SSF56112 15 327 1.6E-48 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily AMJ96_CH00228 0d4befe0029be425f5d2316d3f87f87f 975 Gene3D G3DSA:3.90.1200.10 125 327 5.1E-15 T 12-10-2018 AMJ96_CH00228 0d4befe0029be425f5d2316d3f87f87f 975 Gene3D G3DSA:3.90.1150.10 571 967 5.0E-132 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH00228 0d4befe0029be425f5d2316d3f87f87f 975 SUPERFAMILY SSF53383 561 972 1.32E-105 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH00228 0d4befe0029be425f5d2316d3f87f87f 975 Pfam PF01636 Phosphotransferase enzyme family 38 259 7.0E-23 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase AMJ96_CH00228 0d4befe0029be425f5d2316d3f87f87f 975 Pfam PF00202 Aminotransferase class-III 570 971 1.2E-69 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH00228 0d4befe0029be425f5d2316d3f87f87f 975 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 784 822 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH00228 0d4befe0029be425f5d2316d3f87f87f 975 Gene3D G3DSA:3.30.200.20 15 107 2.5E-5 T 12-10-2018 AMJ96_CH00228 0d4befe0029be425f5d2316d3f87f87f 975 Gene3D G3DSA:3.40.640.10 604 869 5.0E-132 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_PD00082 577d4834158ad88e6b87d4792c33ecf4 278 PRINTS PR00412 Epoxide hydrolase signature 29 47 9.1E-5 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_PD00082 577d4834158ad88e6b87d4792c33ecf4 278 PRINTS PR00412 Epoxide hydrolase signature 219 235 9.1E-5 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_PD00082 577d4834158ad88e6b87d4792c33ecf4 278 PRINTS PR00412 Epoxide hydrolase signature 49 64 9.1E-5 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_PD00082 577d4834158ad88e6b87d4792c33ecf4 278 SUPERFAMILY SSF53474 3 277 1.29E-64 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PD00082 577d4834158ad88e6b87d4792c33ecf4 278 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 1.7E-10 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PD00082 577d4834158ad88e6b87d4792c33ecf4 278 PRINTS PR00111 Alpha/beta hydrolase fold signature 49 64 1.7E-10 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PD00082 577d4834158ad88e6b87d4792c33ecf4 278 PRINTS PR00111 Alpha/beta hydrolase fold signature 221 235 1.7E-10 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PD00082 577d4834158ad88e6b87d4792c33ecf4 278 Gene3D G3DSA:3.40.50.1820 1 277 9.3E-86 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PD00082 577d4834158ad88e6b87d4792c33ecf4 278 Pfam PF00561 alpha/beta hydrolase fold 24 258 5.5E-25 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH01701 2ec7dc6bb9bfc07516201bf21eb62736 233 SUPERFAMILY SSF56808 4 223 5.23E-84 T 12-10-2018 IPR023674 Ribosomal protein L1-like AMJ96_CH01701 2ec7dc6bb9bfc07516201bf21eb62736 233 PIRSF PIRSF002155 1 225 3.8E-79 T 12-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01701 2ec7dc6bb9bfc07516201bf21eb62736 233 Gene3D G3DSA:3.40.50.790 66 157 4.7E-82 T 12-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich AMJ96_CH01701 2ec7dc6bb9bfc07516201bf21eb62736 233 Gene3D G3DSA:3.30.190.20 19 222 4.7E-82 T 12-10-2018 AMJ96_CH01701 2ec7dc6bb9bfc07516201bf21eb62736 233 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 227 43.178 T 12-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 AMJ96_CH01701 2ec7dc6bb9bfc07516201bf21eb62736 233 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 224 4.3E-100 T 12-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 AMJ96_CH01701 2ec7dc6bb9bfc07516201bf21eb62736 233 Pfam PF00687 Ribosomal protein L1p/L10e family 29 218 2.1E-53 T 12-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein AMJ96_CH01701 2ec7dc6bb9bfc07516201bf21eb62736 233 ProSitePatterns PS01199 Ribosomal protein L1 signature. 118 137 - T 12-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_PC00423 9c11028c0574781d9d8a8842733d2cf4 240 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 136 235 9.3E-30 T 12-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 AMJ96_PC00423 9c11028c0574781d9d8a8842733d2cf4 240 Gene3D G3DSA:2.160.20.70 131 240 2.2E-30 T 12-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 AMJ96_PC00423 9c11028c0574781d9d8a8842733d2cf4 240 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 13 239 2.3E-47 T 12-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 AMJ96_PC00423 9c11028c0574781d9d8a8842733d2cf4 240 Gene3D G3DSA:3.30.750.120 5 114 7.2E-6 T 12-10-2018 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily AMJ96_PC00423 9c11028c0574781d9d8a8842733d2cf4 240 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 10 240 26.415 T 12-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 AMJ96_PC00423 9c11028c0574781d9d8a8842733d2cf4 240 SUPERFAMILY SSF63848 135 239 2.75E-29 T 12-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 AMJ96_PB00158 799806e51791e6095deb44800246d398 229 Gene3D G3DSA:1.10.10.10 11 78 1.2E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PB00158 799806e51791e6095deb44800246d398 229 SMART SM00895 87 211 7.2E-17 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PB00158 799806e51791e6095deb44800246d398 229 SUPERFAMILY SSF46785 11 81 4.32E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PB00158 799806e51791e6095deb44800246d398 229 Gene3D G3DSA:1.20.120.530 81 225 1.1E-25 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PB00158 799806e51791e6095deb44800246d398 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 1.5E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PB00158 799806e51791e6095deb44800246d398 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 1.5E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PB00158 799806e51791e6095deb44800246d398 229 SUPERFAMILY SSF48008 83 219 1.39E-23 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PB00158 799806e51791e6095deb44800246d398 229 SMART SM00345 19 77 2.8E-21 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PB00158 799806e51791e6095deb44800246d398 229 Pfam PF07729 FCD domain 87 210 5.8E-26 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PB00158 799806e51791e6095deb44800246d398 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 77 8.5E-20 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH01838 09198f725d5dda343ca9a6cfb47e2b53 219 PIRSF PIRSF000239 1 216 7.6E-74 T 12-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMJ96_CH01838 09198f725d5dda343ca9a6cfb47e2b53 219 Pfam PF00578 AhpC/TSA family 5 143 1.1E-30 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMJ96_CH01838 09198f725d5dda343ca9a6cfb47e2b53 219 Gene3D G3DSA:3.40.30.10 1 154 6.8E-50 T 12-10-2018 AMJ96_CH01838 09198f725d5dda343ca9a6cfb47e2b53 219 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 165 201 1.5E-13 T 12-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMJ96_CH01838 09198f725d5dda343ca9a6cfb47e2b53 219 SUPERFAMILY SSF52833 3 216 1.32E-67 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH01838 09198f725d5dda343ca9a6cfb47e2b53 219 Gene3D G3DSA:3.30.1020.10 155 219 8.5E-22 T 12-10-2018 AMJ96_PA00113 f747ef7eac32e5798bef12109101ca3a 266 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 18 220 3.5E-14 T 12-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AMJ96_PA00113 f747ef7eac32e5798bef12109101ca3a 266 Pfam PF08282 haloacid dehalogenase-like hydrolase 19 93 9.2E-5 T 12-10-2018 AMJ96_PA00113 f747ef7eac32e5798bef12109101ca3a 266 SUPERFAMILY SSF56784 15 242 8.11E-22 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_CH03077 465ecf0e63c76b2c1040032c2742f824 203 SMART SM00903 21 173 2.5E-21 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AMJ96_CH03077 465ecf0e63c76b2c1040032c2742f824 203 Gene3D G3DSA:2.30.110.10 3 203 5.0E-68 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMJ96_CH03077 465ecf0e63c76b2c1040032c2742f824 203 Pfam PF01613 Flavin reductase like domain 24 172 1.1E-20 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AMJ96_CH03077 465ecf0e63c76b2c1040032c2742f824 203 SUPERFAMILY SSF50475 3 198 3.48E-47 T 12-10-2018 AMJ96_CH00209 fb5beca808b3fb75dc95bad2f0d8899c 170 Gene3D G3DSA:1.20.120.1220 2 154 3.1E-5 T 12-10-2018 AMJ96_CH00209 fb5beca808b3fb75dc95bad2f0d8899c 170 Pfam PF01478 Type IV leader peptidase family 9 110 2.5E-14 T 12-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 AMJ96_CH01987 c2d555da6442d5c8efeb70b9436be340 375 Gene3D G3DSA:2.30.42.10 143 235 3.8E-21 T 12-10-2018 AMJ96_CH01987 c2d555da6442d5c8efeb70b9436be340 375 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 145 373 6.8E-50 T 12-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 AMJ96_CH01987 c2d555da6442d5c8efeb70b9436be340 375 SUPERFAMILY SSF50156 118 210 7.49E-18 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 AMJ96_CH01987 c2d555da6442d5c8efeb70b9436be340 375 SMART SM00228 138 203 7.5E-7 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH01987 c2d555da6442d5c8efeb70b9436be340 375 Pfam PF13180 PDZ domain 148 209 1.6E-10 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH01987 c2d555da6442d5c8efeb70b9436be340 375 Pfam PF02163 Peptidase family M50 17 363 7.0E-82 T 12-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 AMJ96_CH03905 e3f4885c0727c152fa459e62a24e421c 403 Gene3D G3DSA:2.40.30.170 282 402 2.6E-34 T 12-10-2018 AMJ96_CH03905 e3f4885c0727c152fa459e62a24e421c 403 SUPERFAMILY SSF111369 102 176 1.96E-10 T 12-10-2018 AMJ96_CH03905 e3f4885c0727c152fa459e62a24e421c 403 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 99 345 2.2E-17 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMJ96_CH03905 e3f4885c0727c152fa459e62a24e421c 403 SUPERFAMILY SSF111369 240 347 9.55E-11 T 12-10-2018 AMJ96_CH03905 e3f4885c0727c152fa459e62a24e421c 403 Gene3D G3DSA:1.10.287.470 158 267 3.1E-9 T 12-10-2018 AMJ96_CH03905 e3f4885c0727c152fa459e62a24e421c 403 Pfam PF00529 HlyD membrane-fusion protein of T1SS 83 394 1.5E-9 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMJ96_CH03905 e3f4885c0727c152fa459e62a24e421c 403 Gene3D G3DSA:2.40.50.100 102 157 2.6E-13 T 12-10-2018 AMJ96_CH02684 7aae512a748fa5226b029070ef0c2e4d 767 Gene3D G3DSA:3.30.420.10 274 499 3.5E-20 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_CH02684 7aae512a748fa5226b029070ef0c2e4d 767 Pfam PF00665 Integrase core domain 279 418 1.8E-11 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMJ96_CH02684 7aae512a748fa5226b029070ef0c2e4d 767 SUPERFAMILY SSF53098 275 422 9.86E-12 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_PD00073 e113c65255c8e5cf552f7a3b5fabee21 324 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 31 286 8.8E-62 T 12-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMJ96_PD00073 e113c65255c8e5cf552f7a3b5fabee21 324 Gene3D G3DSA:3.40.190.170 25 316 7.7E-87 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMJ96_PD00073 e113c65255c8e5cf552f7a3b5fabee21 324 PIRSF PIRSF006470 1 318 2.5E-72 T 12-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 AMJ96_PD00073 e113c65255c8e5cf552f7a3b5fabee21 324 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 31 306 3.6E-72 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMJ96_PD00282 0a5060d5d350733b7dfb6b8709cb2b1e 259 Pfam PF01177 Asp/Glu/Hydantoin racemase 86 235 1.1E-6 T 12-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMJ96_PD00282 0a5060d5d350733b7dfb6b8709cb2b1e 259 Gene3D G3DSA:3.40.50.12500 23 256 6.3E-71 T 12-10-2018 AMJ96_PD00282 0a5060d5d350733b7dfb6b8709cb2b1e 259 PIRSF PIRSF015736 12 257 2.1E-84 T 12-10-2018 IPR026286 Maleate isomerase/Arylmalonate decarboxylase AMJ96_PD00282 0a5060d5d350733b7dfb6b8709cb2b1e 259 TIGRFAM TIGR02990 ectoine_eutA: ectoine utilization protein EutA 16 253 3.8E-127 T 12-10-2018 IPR014332 Ectoine utilization protein EutA AMJ96_CH04348 3385838c36a13b24eec81cfa75a91bbc 370 SMART SM01329 5 361 1.3E-175 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AMJ96_CH04348 3385838c36a13b24eec81cfa75a91bbc 370 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 4 365 48.29 T 12-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 AMJ96_CH04348 3385838c36a13b24eec81cfa75a91bbc 370 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 361 4.9E-132 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AMJ96_CH04348 3385838c36a13b24eec81cfa75a91bbc 370 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 246 265 - T 12-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 AMJ96_CH04348 3385838c36a13b24eec81cfa75a91bbc 370 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 7 360 3.0E-135 T 12-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 AMJ96_CH04348 3385838c36a13b24eec81cfa75a91bbc 370 Gene3D G3DSA:3.40.718.10 4 368 1.4E-131 T 12-10-2018 AMJ96_CH04348 3385838c36a13b24eec81cfa75a91bbc 370 SUPERFAMILY SSF53659 5 366 2.52E-109 T 12-10-2018 AMJ96_CH02183 0911488d1e34b7120c729e6182b49bbd 269 Pfam PF00459 Inositol monophosphatase family 8 261 1.3E-53 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH02183 0911488d1e34b7120c729e6182b49bbd 269 Gene3D G3DSA:3.30.540.10 3 147 1.4E-42 T 12-10-2018 AMJ96_CH02183 0911488d1e34b7120c729e6182b49bbd 269 Gene3D G3DSA:3.40.190.80 151 269 4.7E-22 T 12-10-2018 AMJ96_CH02183 0911488d1e34b7120c729e6182b49bbd 269 SUPERFAMILY SSF56655 7 262 1.96E-67 T 12-10-2018 AMJ96_CH02183 0911488d1e34b7120c729e6182b49bbd 269 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 88 101 - T 12-10-2018 IPR020583 Inositol monophosphatase, metal-binding site AMJ96_CH02183 0911488d1e34b7120c729e6182b49bbd 269 PRINTS PR00377 Inositol monophosphatase superfamily signature 68 84 6.4E-32 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH02183 0911488d1e34b7120c729e6182b49bbd 269 PRINTS PR00377 Inositol monophosphatase superfamily signature 46 66 6.4E-32 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH02183 0911488d1e34b7120c729e6182b49bbd 269 PRINTS PR00377 Inositol monophosphatase superfamily signature 137 160 6.4E-32 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH02183 0911488d1e34b7120c729e6182b49bbd 269 PRINTS PR00377 Inositol monophosphatase superfamily signature 88 104 6.4E-32 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH02183 0911488d1e34b7120c729e6182b49bbd 269 PRINTS PR00377 Inositol monophosphatase superfamily signature 213 237 6.4E-32 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH02183 0911488d1e34b7120c729e6182b49bbd 269 PRINTS PR00377 Inositol monophosphatase superfamily signature 182 203 6.4E-32 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH01737 5ec5318b1ed129700d0995a06b6eb2c5 216 Gene3D G3DSA:3.40.50.300 1 216 2.2E-74 T 12-10-2018 AMJ96_CH01737 5ec5318b1ed129700d0995a06b6eb2c5 216 Hamap MF_00235 Adenylate kinase [adk]. 1 214 47.126 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMJ96_CH01737 5ec5318b1ed129700d0995a06b6eb2c5 216 PRINTS PR00094 Adenylate kinase signature 32 46 5.0E-34 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMJ96_CH01737 5ec5318b1ed129700d0995a06b6eb2c5 216 PRINTS PR00094 Adenylate kinase signature 178 192 5.0E-34 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMJ96_CH01737 5ec5318b1ed129700d0995a06b6eb2c5 216 PRINTS PR00094 Adenylate kinase signature 81 97 5.0E-34 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMJ96_CH01737 5ec5318b1ed129700d0995a06b6eb2c5 216 PRINTS PR00094 Adenylate kinase signature 4 17 5.0E-34 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMJ96_CH01737 5ec5318b1ed129700d0995a06b6eb2c5 216 PRINTS PR00094 Adenylate kinase signature 161 176 5.0E-34 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMJ96_CH01737 5ec5318b1ed129700d0995a06b6eb2c5 216 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 12-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AMJ96_CH01737 5ec5318b1ed129700d0995a06b6eb2c5 216 Pfam PF00406 Adenylate kinase 5 191 8.9E-58 T 12-10-2018 AMJ96_CH01737 5ec5318b1ed129700d0995a06b6eb2c5 216 SUPERFAMILY SSF52540 1 215 4.61E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01737 5ec5318b1ed129700d0995a06b6eb2c5 216 TIGRFAM TIGR01351 adk: adenylate kinase 2 213 1.6E-76 T 12-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 AMJ96_CH01737 5ec5318b1ed129700d0995a06b6eb2c5 216 Pfam PF05191 Adenylate kinase, active site lid 127 163 8.1E-10 T 12-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 AMJ96_CH03032 ed4ef860a074fb88cf406d25aded1ce2 211 PIRSF PIRSF006324 1 208 1.2E-61 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMJ96_CH03032 ed4ef860a074fb88cf406d25aded1ce2 211 Pfam PF01810 LysE type translocator 15 201 9.1E-32 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMJ96_CH03217 349b75e0c475740258c4db31f6ed1c2a 336 PIRSF PIRSF015753 5 323 1.5E-135 T 12-10-2018 IPR016639 Glutathione S-transferase Omega/GSH GO:0004364 AMJ96_CH03217 349b75e0c475740258c4db31f6ed1c2a 336 Gene3D G3DSA:1.20.1050.10 173 283 2.3E-136 T 12-10-2018 AMJ96_CH03217 349b75e0c475740258c4db31f6ed1c2a 336 Pfam PF13409 Glutathione S-transferase, N-terminal domain 62 157 8.9E-24 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMJ96_CH03217 349b75e0c475740258c4db31f6ed1c2a 336 Pfam PF13410 Glutathione S-transferase, C-terminal domain 203 269 6.2E-13 T 12-10-2018 AMJ96_CH03217 349b75e0c475740258c4db31f6ed1c2a 336 SUPERFAMILY SSF52833 42 161 6.25E-17 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH03217 349b75e0c475740258c4db31f6ed1c2a 336 Gene3D G3DSA:3.40.30.130 21 316 2.3E-136 T 12-10-2018 AMJ96_CH03217 349b75e0c475740258c4db31f6ed1c2a 336 SUPERFAMILY SSF47616 170 323 2.51E-36 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMJ96_CH02961 880d49ff8ea45e870fb49fa33d9b0dcc 570 Gene3D G3DSA:2.30.42.10 309 417 1.1E-27 T 12-10-2018 AMJ96_CH02961 880d49ff8ea45e870fb49fa33d9b0dcc 570 Gene3D G3DSA:2.30.42.10 471 567 7.7E-14 T 12-10-2018 AMJ96_CH02961 880d49ff8ea45e870fb49fa33d9b0dcc 570 SUPERFAMILY SSF50494 74 306 4.67E-64 T 12-10-2018 IPR009003 Peptidase S1, PA clan AMJ96_CH02961 880d49ff8ea45e870fb49fa33d9b0dcc 570 Pfam PF13365 Trypsin-like peptidase domain 141 275 1.5E-33 T 12-10-2018 AMJ96_CH02961 880d49ff8ea45e870fb49fa33d9b0dcc 570 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 77 418 1.1E-135 T 12-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 AMJ96_CH02961 880d49ff8ea45e870fb49fa33d9b0dcc 570 SMART SM00228 474 559 3.4E-7 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH02961 880d49ff8ea45e870fb49fa33d9b0dcc 570 SMART SM00228 314 396 1.7E-10 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH02961 880d49ff8ea45e870fb49fa33d9b0dcc 570 SUPERFAMILY SSF50156 272 397 9.33E-23 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 AMJ96_CH02961 880d49ff8ea45e870fb49fa33d9b0dcc 570 Gene3D G3DSA:2.40.10.120 76 308 1.1E-82 T 12-10-2018 AMJ96_CH02961 880d49ff8ea45e870fb49fa33d9b0dcc 570 Pfam PF13180 PDZ domain 314 405 1.7E-16 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH02961 880d49ff8ea45e870fb49fa33d9b0dcc 570 SUPERFAMILY SSF50156 474 547 8.02E-12 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 AMJ96_CH02961 880d49ff8ea45e870fb49fa33d9b0dcc 570 PRINTS PR00834 HtrA/DegQ protease family signature 212 236 1.5E-55 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH02961 880d49ff8ea45e870fb49fa33d9b0dcc 570 PRINTS PR00834 HtrA/DegQ protease family signature 150 162 1.5E-55 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH02961 880d49ff8ea45e870fb49fa33d9b0dcc 570 PRINTS PR00834 HtrA/DegQ protease family signature 268 285 1.5E-55 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH02961 880d49ff8ea45e870fb49fa33d9b0dcc 570 PRINTS PR00834 HtrA/DegQ protease family signature 246 263 1.5E-55 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH02961 880d49ff8ea45e870fb49fa33d9b0dcc 570 PRINTS PR00834 HtrA/DegQ protease family signature 171 191 1.5E-55 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH02961 880d49ff8ea45e870fb49fa33d9b0dcc 570 PRINTS PR00834 HtrA/DegQ protease family signature 354 366 1.5E-55 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH00033 63491337fbd948dd43f294f8719b9749 133 Gene3D G3DSA:3.40.50.510 1 131 1.3E-38 T 12-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 AMJ96_CH00033 63491337fbd948dd43f294f8719b9749 133 Pfam PF03610 PTS system fructose IIA component 3 111 4.7E-29 T 12-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AMJ96_CH00033 63491337fbd948dd43f294f8719b9749 133 SUPERFAMILY SSF53062 1 129 1.44E-36 T 12-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 AMJ96_CH03288 afce0d943f46577fc9ce64848f7f46cb 594 Pfam PF12146 Serine aminopeptidase, S33 42 277 8.4E-68 T 12-10-2018 IPR022742 Serine aminopeptidase, S33 AMJ96_CH03288 afce0d943f46577fc9ce64848f7f46cb 594 Gene3D G3DSA:3.40.50.150 370 593 1.6E-20 T 12-10-2018 AMJ96_CH03288 afce0d943f46577fc9ce64848f7f46cb 594 SUPERFAMILY SSF53335 405 585 4.06E-19 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH03288 afce0d943f46577fc9ce64848f7f46cb 594 Pfam PF12147 Putative methyltransferase 285 593 3.1E-151 T 12-10-2018 IPR022744 Methyltransferase domain, putative AMJ96_CH03288 afce0d943f46577fc9ce64848f7f46cb 594 SUPERFAMILY SSF53474 17 291 6.02E-34 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH03288 afce0d943f46577fc9ce64848f7f46cb 594 Gene3D G3DSA:3.40.50.1820 8 298 3.6E-49 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH04013 376bc33347d0d787fcf5f598d231c220 471 Pfam PF01943 Polysaccharide biosynthesis protein 47 319 9.0E-17 T 12-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 AMJ96_CH04013 376bc33347d0d787fcf5f598d231c220 471 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 371 455 4.6E-12 T 12-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain AMJ96_CH01767 6b4c38b774c06570653b1cc24e1e98b6 323 SUPERFAMILY SSF161098 27 323 2.52E-63 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01767 6b4c38b774c06570653b1cc24e1e98b6 323 Gene3D G3DSA:1.10.3720.10 20 314 4.5E-53 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01767 6b4c38b774c06570653b1cc24e1e98b6 323 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 122 315 2.0E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03963 6b4c38b774c06570653b1cc24e1e98b6 323 SUPERFAMILY SSF161098 27 323 2.52E-63 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03963 6b4c38b774c06570653b1cc24e1e98b6 323 Gene3D G3DSA:1.10.3720.10 20 314 4.5E-53 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03963 6b4c38b774c06570653b1cc24e1e98b6 323 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 122 315 2.0E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02133 ffe818652ab8b39f6cf7865729848493 238 Gene3D G3DSA:3.40.50.300 6 233 6.2E-61 T 12-10-2018 AMJ96_CH02133 ffe818652ab8b39f6cf7865729848493 238 SMART SM00382 35 235 3.6E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02133 ffe818652ab8b39f6cf7865729848493 238 Pfam PF00005 ABC transporter 26 174 2.1E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02133 ffe818652ab8b39f6cf7865729848493 238 SUPERFAMILY SSF52540 6 227 2.47E-71 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02133 ffe818652ab8b39f6cf7865729848493 238 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02299 e06125ece115b33ad84ea55159ce5cc5 347 PIRSF PIRSF037139 186 347 8.5E-55 T 12-10-2018 IPR021174 Uncharacterised conserved protein UCP037139 AMJ96_CH02299 e06125ece115b33ad84ea55159ce5cc5 347 PIRSF PIRSF037139 1 218 5.8E-81 T 12-10-2018 IPR021174 Uncharacterised conserved protein UCP037139 AMJ96_CH02299 e06125ece115b33ad84ea55159ce5cc5 347 Gene3D G3DSA:2.60.40.1890 231 345 7.3E-36 T 12-10-2018 IPR036182 Copper chaperone PCuAC superfamily AMJ96_CH02299 e06125ece115b33ad84ea55159ce5cc5 347 Pfam PF04314 Copper chaperone PCu(A)C 228 336 3.4E-37 T 12-10-2018 IPR007410 Copper chaperone PCuAC AMJ96_CH02299 e06125ece115b33ad84ea55159ce5cc5 347 Gene3D G3DSA:2.60.40.2230 22 182 9.7E-30 T 12-10-2018 IPR038507 YcnI-like superfamily AMJ96_CH02299 e06125ece115b33ad84ea55159ce5cc5 347 Pfam PF07987 Domain of unkown function (DUF1775) 24 169 3.9E-41 T 12-10-2018 IPR012533 YcnI-like AMJ96_CH02299 e06125ece115b33ad84ea55159ce5cc5 347 SUPERFAMILY SSF110087 211 344 1.96E-43 T 12-10-2018 IPR036182 Copper chaperone PCuAC superfamily AMJ96_CH03643 1e64131853119864793497aa180c6a1d 580 SUPERFAMILY SSF116726 212 283 5.1E-9 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMJ96_CH03643 1e64131853119864793497aa180c6a1d 580 Gene3D G3DSA:3.30.70.1450 214 287 1.3E-6 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMJ96_CH03643 1e64131853119864793497aa180c6a1d 580 Pfam PF03600 Citrate transporter 16 528 6.4E-40 T 12-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 AMJ96_CH03643 1e64131853119864793497aa180c6a1d 580 SUPERFAMILY SSF116726 299 377 4.71E-9 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 AMJ96_CH01105 a05d0ab6809efca94f281085cb2bd1ac 377 Gene3D G3DSA:2.120.10.10 1 358 2.9E-54 T 12-10-2018 AMJ96_CH01105 a05d0ab6809efca94f281085cb2bd1ac 377 SUPERFAMILY SSF50939 7 345 3.6E-44 T 12-10-2018 IPR036278 Sialidase superfamily KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 AMJ96_CH00907 bf22d1a50a3766be0e2870c24229d09e 427 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 292 9.6E-78 T 12-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMJ96_CH00907 bf22d1a50a3766be0e2870c24229d09e 427 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 100 1.8E-35 T 12-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMJ96_CH00907 bf22d1a50a3766be0e2870c24229d09e 427 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 418 41.925 T 12-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMJ96_CH00907 bf22d1a50a3766be0e2870c24229d09e 427 SUPERFAMILY SSF51246 325 418 2.12E-28 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMJ96_CH00907 bf22d1a50a3766be0e2870c24229d09e 427 Gene3D G3DSA:3.30.1490.20 119 187 3.9E-24 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMJ96_CH00907 bf22d1a50a3766be0e2870c24229d09e 427 Gene3D G3DSA:3.40.50.20 1 93 1.0E-36 T 12-10-2018 AMJ96_CH00907 bf22d1a50a3766be0e2870c24229d09e 427 Gene3D G3DSA:3.30.470.20 188 325 2.0E-57 T 12-10-2018 AMJ96_CH00907 bf22d1a50a3766be0e2870c24229d09e 427 SMART SM01209 101 292 9.8E-130 T 12-10-2018 AMJ96_CH00907 bf22d1a50a3766be0e2870c24229d09e 427 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 419 6.1E-162 T 12-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMJ96_CH00907 bf22d1a50a3766be0e2870c24229d09e 427 SMART SM01210 326 418 2.4E-48 T 12-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMJ96_CH00907 bf22d1a50a3766be0e2870c24229d09e 427 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 327 416 3.9E-27 T 12-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMJ96_CH00907 bf22d1a50a3766be0e2870c24229d09e 427 SUPERFAMILY SSF56059 102 320 1.68E-59 T 12-10-2018 AMJ96_CH00907 bf22d1a50a3766be0e2870c24229d09e 427 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 286 293 - T 12-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMJ96_CH00907 bf22d1a50a3766be0e2870c24229d09e 427 Gene3D G3DSA:3.90.600.10 326 427 5.0E-33 T 12-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMJ96_CH00907 bf22d1a50a3766be0e2870c24229d09e 427 SUPERFAMILY SSF52440 1 101 1.73E-35 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMJ96_PB00357 a644ee068ded2107f07d0cdeb4d56dc4 138 Pfam PF07883 Cupin domain 55 124 4.5E-17 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_PB00357 a644ee068ded2107f07d0cdeb4d56dc4 138 Gene3D G3DSA:2.60.120.10 40 134 9.2E-17 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PB00357 a644ee068ded2107f07d0cdeb4d56dc4 138 SUPERFAMILY SSF51182 30 124 1.63E-16 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH02094 5095c8ca8ebef4777b08125b66bdb233 437 SUPERFAMILY SSF51338 5 402 1.26E-8 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH02094 5095c8ca8ebef4777b08125b66bdb233 437 Pfam PF07969 Amidohydrolase family 157 412 3.4E-32 T 12-10-2018 IPR013108 Amidohydrolase 3 AMJ96_CH02094 5095c8ca8ebef4777b08125b66bdb233 437 Gene3D G3DSA:2.30.40.10 39 426 1.7E-114 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH02094 5095c8ca8ebef4777b08125b66bdb233 437 SUPERFAMILY SSF51556 75 392 7.15E-84 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_CH02094 5095c8ca8ebef4777b08125b66bdb233 437 Gene3D G3DSA:3.20.20.140 76 380 1.7E-114 T 12-10-2018 AMJ96_CH01710 f8132dd5034e73797f55003fd1968709 123 SUPERFAMILY SSF50249 2 123 3.0E-52 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH01710 f8132dd5034e73797f55003fd1968709 123 Gene3D G3DSA:2.40.50.140 1 123 4.4E-63 T 12-10-2018 AMJ96_CH01710 f8132dd5034e73797f55003fd1968709 123 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01710 f8132dd5034e73797f55003fd1968709 123 PIRSF PIRSF002133 1 123 3.7E-54 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01710 f8132dd5034e73797f55003fd1968709 123 Pfam PF00164 Ribosomal protein S12/S23 12 123 1.3E-41 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01710 f8132dd5034e73797f55003fd1968709 123 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 123 3.6E-68 T 12-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01710 f8132dd5034e73797f55003fd1968709 123 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 39.736 T 12-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01710 f8132dd5034e73797f55003fd1968709 123 PRINTS PR01034 Ribosomal protein S12 signature 58 77 6.2E-60 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01710 f8132dd5034e73797f55003fd1968709 123 PRINTS PR01034 Ribosomal protein S12 signature 42 57 6.2E-60 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01710 f8132dd5034e73797f55003fd1968709 123 PRINTS PR01034 Ribosomal protein S12 signature 27 42 6.2E-60 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01710 f8132dd5034e73797f55003fd1968709 123 PRINTS PR01034 Ribosomal protein S12 signature 94 110 6.2E-60 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01710 f8132dd5034e73797f55003fd1968709 123 PRINTS PR01034 Ribosomal protein S12 signature 77 94 6.2E-60 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01710 f8132dd5034e73797f55003fd1968709 123 PRINTS PR01034 Ribosomal protein S12 signature 110 122 6.2E-60 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_PB00393 3bb8989e7f78baefb46960a6da835c69 94 Gene3D G3DSA:3.90.25.10 11 83 8.3E-20 T 12-10-2018 AMJ96_PB00393 3bb8989e7f78baefb46960a6da835c69 94 Gene3D G3DSA:3.40.50.720 29 56 8.3E-20 T 12-10-2018 AMJ96_PB00393 3bb8989e7f78baefb46960a6da835c69 94 Pfam PF16363 GDP-mannose 4,6 dehydratase 20 83 3.3E-17 T 12-10-2018 IPR016040 NAD(P)-binding domain AMJ96_CH00845 c5dde271db4b2d9197a6213ca336fa03 373 Pfam PF13393 Histidyl-tRNA synthetase 239 366 3.8E-12 T 12-10-2018 AMJ96_CH00845 c5dde271db4b2d9197a6213ca336fa03 373 Pfam PF13393 Histidyl-tRNA synthetase 9 169 4.3E-18 T 12-10-2018 AMJ96_CH00845 c5dde271db4b2d9197a6213ca336fa03 373 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 1 360 24.802 T 12-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 AMJ96_CH00845 c5dde271db4b2d9197a6213ca336fa03 373 SUPERFAMILY SSF55681 13 368 3.23E-42 T 12-10-2018 AMJ96_CH00845 c5dde271db4b2d9197a6213ca336fa03 373 PIRSF PIRSF001549 9 244 2.7E-14 T 12-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 AMJ96_CH00845 c5dde271db4b2d9197a6213ca336fa03 373 PIRSF PIRSF001549 233 369 9.6E-16 T 12-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 AMJ96_CH03328 38caf8ee619a060ab28569e8468fe63b 330 SUPERFAMILY SSF51735 3 147 1.06E-47 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03328 38caf8ee619a060ab28569e8468fe63b 330 Gene3D G3DSA:3.30.360.10 139 268 7.6E-106 T 12-10-2018 AMJ96_CH03328 38caf8ee619a060ab28569e8468fe63b 330 TIGRFAM TIGR04380 myo_inos_iolG: inositol 2-dehydrogenase 3 327 2.1E-128 T 12-10-2018 IPR030827 Inositol 2-dehydrogenase AMJ96_CH03328 38caf8ee619a060ab28569e8468fe63b 330 Gene3D G3DSA:3.40.50.720 6 322 7.6E-106 T 12-10-2018 AMJ96_CH03328 38caf8ee619a060ab28569e8468fe63b 330 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 120 1.9E-24 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_CH03328 38caf8ee619a060ab28569e8468fe63b 330 SUPERFAMILY SSF55347 125 291 1.29E-37 T 12-10-2018 AMJ96_CH03328 38caf8ee619a060ab28569e8468fe63b 330 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 132 237 3.8E-10 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AMJ96_CH00700 b393331f5912f93ba21e86c68347a8a7 113 Pfam PF02049 Flagellar hook-basal body complex protein FliE 28 113 2.4E-15 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AMJ96_CH00700 b393331f5912f93ba21e86c68347a8a7 113 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 6 113 13.923 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AMJ96_CH01715 6ef3377f608d6edf30025a7cc0b2fa2a 213 ProSitePatterns PS00474 Ribosomal protein L3 signature. 102 125 - T 12-10-2018 IPR019926 Ribosomal protein L3, conserved site AMJ96_CH01715 6ef3377f608d6edf30025a7cc0b2fa2a 213 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 205 9.6E-83 T 12-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01715 6ef3377f608d6edf30025a7cc0b2fa2a 213 Gene3D G3DSA:2.40.50.620 32 97 3.9E-27 T 12-10-2018 AMJ96_CH01715 6ef3377f608d6edf30025a7cc0b2fa2a 213 SUPERFAMILY SSF50447 1 211 3.88E-79 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily AMJ96_CH01715 6ef3377f608d6edf30025a7cc0b2fa2a 213 Gene3D G3DSA:2.40.30.10 124 211 1.3E-16 T 12-10-2018 AMJ96_CH01715 6ef3377f608d6edf30025a7cc0b2fa2a 213 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 208 35.385 T 12-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01715 6ef3377f608d6edf30025a7cc0b2fa2a 213 Pfam PF00297 Ribosomal protein L3 89 181 3.4E-14 T 12-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01158 a07b8dc99d452d127b5c153d760dc1cb 55 SUPERFAMILY SSF51735 2 48 8.29E-10 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01158 a07b8dc99d452d127b5c153d760dc1cb 55 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 47 4.1E-8 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_CH01158 a07b8dc99d452d127b5c153d760dc1cb 55 Gene3D G3DSA:3.40.50.720 5 49 3.8E-13 T 12-10-2018 AMJ96_PC00268 9e717c2f3c2c24b4b58fac73d177753d 285 Gene3D G3DSA:1.10.3720.10 20 280 4.6E-69 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00268 9e717c2f3c2c24b4b58fac73d177753d 285 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 281 8.3E-25 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00268 9e717c2f3c2c24b4b58fac73d177753d 285 SUPERFAMILY SSF161098 23 273 1.78E-55 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00268 9e717c2f3c2c24b4b58fac73d177753d 285 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 16 279 1.4E-128 T 12-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 AMJ96_PC00268 9e717c2f3c2c24b4b58fac73d177753d 285 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 15 275 2.2E-96 T 12-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 AMJ96_PD00561 154cdf6bdc623a4cb8f9fd62c3c1b342 307 SUPERFAMILY SSF53850 90 293 1.81E-50 T 12-10-2018 AMJ96_PD00561 154cdf6bdc623a4cb8f9fd62c3c1b342 307 SUPERFAMILY SSF46785 6 111 3.49E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00561 154cdf6bdc623a4cb8f9fd62c3c1b342 307 Gene3D G3DSA:3.40.190.10 163 263 5.7E-65 T 12-10-2018 AMJ96_PD00561 154cdf6bdc623a4cb8f9fd62c3c1b342 307 Gene3D G3DSA:3.40.190.10 91 290 5.7E-65 T 12-10-2018 AMJ96_PD00561 154cdf6bdc623a4cb8f9fd62c3c1b342 307 Pfam PF03466 LysR substrate binding domain 88 292 3.7E-49 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PD00561 154cdf6bdc623a4cb8f9fd62c3c1b342 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 62 4.8E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00561 154cdf6bdc623a4cb8f9fd62c3c1b342 307 Gene3D G3DSA:1.10.10.10 3 89 5.7E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01042 15abfe1aba550806692511f53e41b7b8 255 Pfam PF00106 short chain dehydrogenase 4 116 5.2E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01042 15abfe1aba550806692511f53e41b7b8 255 Gene3D G3DSA:3.40.50.720 2 254 5.1E-49 T 12-10-2018 AMJ96_CH01042 15abfe1aba550806692511f53e41b7b8 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 1.2E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01042 15abfe1aba550806692511f53e41b7b8 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 1.2E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01042 15abfe1aba550806692511f53e41b7b8 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 1.2E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01042 15abfe1aba550806692511f53e41b7b8 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.2E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01042 15abfe1aba550806692511f53e41b7b8 255 SUPERFAMILY SSF51735 2 222 6.88E-38 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00015 e9bf7ab67584870e1657ca0174b124b9 317 Gene3D G3DSA:1.20.1050.10 173 283 1.2E-117 T 12-10-2018 AMJ96_CH00015 e9bf7ab67584870e1657ca0174b124b9 317 SUPERFAMILY SSF52833 43 161 4.11E-12 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH00015 e9bf7ab67584870e1657ca0174b124b9 317 SUPERFAMILY SSF47616 168 298 1.67E-24 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMJ96_CH00015 e9bf7ab67584870e1657ca0174b124b9 317 Gene3D G3DSA:3.40.30.130 21 312 1.2E-117 T 12-10-2018 AMJ96_CH00015 e9bf7ab67584870e1657ca0174b124b9 317 Pfam PF13410 Glutathione S-transferase, C-terminal domain 204 275 6.0E-10 T 12-10-2018 AMJ96_CH00015 e9bf7ab67584870e1657ca0174b124b9 317 PIRSF PIRSF015753 4 316 1.0E-111 T 12-10-2018 IPR016639 Glutathione S-transferase Omega/GSH GO:0004364 AMJ96_CH00015 e9bf7ab67584870e1657ca0174b124b9 317 Pfam PF13409 Glutathione S-transferase, N-terminal domain 62 157 7.6E-21 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMJ96_CH03324 4231b62d316f5905fe14163537a4e2a2 335 SUPERFAMILY SSF46785 30 140 2.08E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03324 4231b62d316f5905fe14163537a4e2a2 335 SUPERFAMILY SSF53850 118 332 4.34E-29 T 12-10-2018 AMJ96_CH03324 4231b62d316f5905fe14163537a4e2a2 335 Gene3D G3DSA:3.40.190.10 195 302 3.3E-35 T 12-10-2018 AMJ96_CH03324 4231b62d316f5905fe14163537a4e2a2 335 Gene3D G3DSA:1.10.10.10 30 117 4.4E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03324 4231b62d316f5905fe14163537a4e2a2 335 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 32 90 3.6E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03324 4231b62d316f5905fe14163537a4e2a2 335 Gene3D G3DSA:3.40.190.10 122 319 3.3E-35 T 12-10-2018 AMJ96_CH03324 4231b62d316f5905fe14163537a4e2a2 335 Pfam PF03466 LysR substrate binding domain 117 329 4.6E-27 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH01187 525f897f9ffe64d38cb3d9ae83922261 206 SUPERFAMILY SSF52833 1 83 4.58E-20 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH01187 525f897f9ffe64d38cb3d9ae83922261 206 Gene3D G3DSA:3.40.30.10 1 86 2.4E-24 T 12-10-2018 AMJ96_CH01187 525f897f9ffe64d38cb3d9ae83922261 206 Pfam PF00043 Glutathione S-transferase, C-terminal domain 123 195 2.0E-6 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMJ96_CH01187 525f897f9ffe64d38cb3d9ae83922261 206 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 74 9.5E-16 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMJ96_CH01187 525f897f9ffe64d38cb3d9ae83922261 206 Gene3D G3DSA:1.20.1050.10 87 194 2.5E-42 T 12-10-2018 AMJ96_CH01187 525f897f9ffe64d38cb3d9ae83922261 206 SUPERFAMILY SSF47616 81 203 4.55E-20 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMJ96_CH03511 f5b29a043e256ea0e60e0efd185a7208 375 SUPERFAMILY SSF161098 183 350 9.59E-18 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03511 f5b29a043e256ea0e60e0efd185a7208 375 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 194 356 2.0E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03511 f5b29a043e256ea0e60e0efd185a7208 375 Gene3D G3DSA:1.10.3720.10 171 366 1.4E-12 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00065 ee7f73722e4a1efcf1fa49558c168bc0 276 SUPERFAMILY SSF56281 7 275 4.98E-48 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_PC00065 ee7f73722e4a1efcf1fa49558c168bc0 276 Gene3D G3DSA:3.60.15.10 7 276 9.4E-46 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_PC00065 ee7f73722e4a1efcf1fa49558c168bc0 276 Pfam PF12706 Beta-lactamase superfamily domain 41 242 1.1E-34 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH04364 76fabc03748966b95d3217df7812d1a7 548 Gene3D G3DSA:2.70.98.70 332 449 8.6E-8 T 12-10-2018 AMJ96_CH04364 76fabc03748966b95d3217df7812d1a7 548 Gene3D G3DSA:1.50.10.100 14 304 8.5E-27 T 12-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 AMJ96_CH04364 76fabc03748966b95d3217df7812d1a7 548 Pfam PF07940 Heparinase II/III-like protein 300 542 2.8E-59 T 12-10-2018 IPR012480 Heparinase II/III-like GO:0016829 AMJ96_CH00389 836e3033cee4632defd1f35acd9f278b 139 Gene3D G3DSA:1.10.260.40 8 77 3.9E-16 T 12-10-2018 AMJ96_CH00389 836e3033cee4632defd1f35acd9f278b 139 SMART SM00530 18 73 6.7E-12 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH00389 836e3033cee4632defd1f35acd9f278b 139 SUPERFAMILY SSF47413 5 82 1.51E-29 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH00389 836e3033cee4632defd1f35acd9f278b 139 Pfam PF01381 Helix-turn-helix 19 72 1.2E-11 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH02140 944c8bf383cacc0d88e5cef512d5a953 522 Pfam PF00005 ABC transporter 278 438 5.7E-8 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02140 944c8bf383cacc0d88e5cef512d5a953 522 ProSitePatterns PS00211 ABC transporters family signature. 411 425 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02140 944c8bf383cacc0d88e5cef512d5a953 522 SMART SM00382 37 223 5.0E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02140 944c8bf383cacc0d88e5cef512d5a953 522 Pfam PF00005 ABC transporter 29 173 3.5E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02140 944c8bf383cacc0d88e5cef512d5a953 522 Gene3D G3DSA:3.40.50.300 259 503 2.1E-31 T 12-10-2018 AMJ96_CH02140 944c8bf383cacc0d88e5cef512d5a953 522 SUPERFAMILY SSF52540 261 498 6.25E-31 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02140 944c8bf383cacc0d88e5cef512d5a953 522 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02140 944c8bf383cacc0d88e5cef512d5a953 522 SUPERFAMILY SSF52540 12 229 1.43E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02140 944c8bf383cacc0d88e5cef512d5a953 522 Gene3D G3DSA:3.40.50.300 10 256 2.4E-62 T 12-10-2018 AMJ96_PB00045 3b8b1cf1c4b48e870d3d82dd610b4197 390 SMART SM00228 197 279 9.1E-10 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_PB00045 3b8b1cf1c4b48e870d3d82dd610b4197 390 SMART SM00228 298 378 4.9E-6 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_PB00045 3b8b1cf1c4b48e870d3d82dd610b4197 390 Gene3D G3DSA:2.40.10.120 7 190 5.8E-69 T 12-10-2018 AMJ96_PB00045 3b8b1cf1c4b48e870d3d82dd610b4197 390 SUPERFAMILY SSF50494 16 193 5.62E-54 T 12-10-2018 IPR009003 Peptidase S1, PA clan AMJ96_PB00045 3b8b1cf1c4b48e870d3d82dd610b4197 390 Pfam PF13180 PDZ domain 320 380 7.8E-7 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_PB00045 3b8b1cf1c4b48e870d3d82dd610b4197 390 Pfam PF13180 PDZ domain 205 281 4.2E-10 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_PB00045 3b8b1cf1c4b48e870d3d82dd610b4197 390 PRINTS PR00834 HtrA/DegQ protease family signature 94 118 8.6E-53 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_PB00045 3b8b1cf1c4b48e870d3d82dd610b4197 390 PRINTS PR00834 HtrA/DegQ protease family signature 54 74 8.6E-53 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_PB00045 3b8b1cf1c4b48e870d3d82dd610b4197 390 PRINTS PR00834 HtrA/DegQ protease family signature 151 168 8.6E-53 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_PB00045 3b8b1cf1c4b48e870d3d82dd610b4197 390 PRINTS PR00834 HtrA/DegQ protease family signature 33 45 8.6E-53 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_PB00045 3b8b1cf1c4b48e870d3d82dd610b4197 390 PRINTS PR00834 HtrA/DegQ protease family signature 237 249 8.6E-53 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_PB00045 3b8b1cf1c4b48e870d3d82dd610b4197 390 PRINTS PR00834 HtrA/DegQ protease family signature 129 146 8.6E-53 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_PB00045 3b8b1cf1c4b48e870d3d82dd610b4197 390 Pfam PF13365 Trypsin-like peptidase domain 23 158 2.3E-30 T 12-10-2018 AMJ96_PB00045 3b8b1cf1c4b48e870d3d82dd610b4197 390 Gene3D G3DSA:2.30.42.10 307 385 1.4E-15 T 12-10-2018 AMJ96_PB00045 3b8b1cf1c4b48e870d3d82dd610b4197 390 SUPERFAMILY SSF50156 163 264 6.92E-19 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 AMJ96_PB00045 3b8b1cf1c4b48e870d3d82dd610b4197 390 SUPERFAMILY SSF50156 314 382 8.15E-14 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 AMJ96_PB00045 3b8b1cf1c4b48e870d3d82dd610b4197 390 Gene3D G3DSA:2.30.42.10 192 290 8.2E-20 T 12-10-2018 AMJ96_CH01540 510866f7e9475d1cfe6e6552ba900229 463 Pfam PF07732 Multicopper oxidase 51 159 5.1E-29 T 12-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 AMJ96_CH01540 510866f7e9475d1cfe6e6552ba900229 463 SUPERFAMILY SSF49503 58 183 7.58E-29 T 12-10-2018 IPR008972 Cupredoxin AMJ96_CH01540 510866f7e9475d1cfe6e6552ba900229 463 Gene3D G3DSA:2.60.40.420 39 160 1.4E-31 T 12-10-2018 IPR008972 Cupredoxin AMJ96_CH01540 510866f7e9475d1cfe6e6552ba900229 463 Gene3D G3DSA:2.60.40.420 313 463 4.6E-36 T 12-10-2018 IPR008972 Cupredoxin AMJ96_CH01540 510866f7e9475d1cfe6e6552ba900229 463 Gene3D G3DSA:2.60.40.420 161 311 5.6E-26 T 12-10-2018 IPR008972 Cupredoxin AMJ96_CH01540 510866f7e9475d1cfe6e6552ba900229 463 SUPERFAMILY SSF49503 163 275 4.8E-14 T 12-10-2018 IPR008972 Cupredoxin AMJ96_CH01540 510866f7e9475d1cfe6e6552ba900229 463 Pfam PF07731 Multicopper oxidase 366 459 3.8E-23 T 12-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 AMJ96_CH01540 510866f7e9475d1cfe6e6552ba900229 463 Pfam PF00394 Multicopper oxidase 215 274 1.9E-4 T 12-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 AMJ96_CH01540 510866f7e9475d1cfe6e6552ba900229 463 ProSitePatterns PS00080 Multicopper oxidases signature 2. 445 456 - T 12-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 AMJ96_CH01540 510866f7e9475d1cfe6e6552ba900229 463 SUPERFAMILY SSF49503 312 462 1.57E-28 T 12-10-2018 IPR008972 Cupredoxin AMJ96_CH01516 085f038e02eba06046def12cacdc8f22 140 Gene3D G3DSA:3.30.70.141 1 140 4.1E-51 T 12-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMJ96_CH01516 085f038e02eba06046def12cacdc8f22 140 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 12-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMJ96_CH01516 085f038e02eba06046def12cacdc8f22 140 Pfam PF00334 Nucleoside diphosphate kinase 4 138 2.2E-50 T 12-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMJ96_CH01516 085f038e02eba06046def12cacdc8f22 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 1.5E-33 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMJ96_CH01516 085f038e02eba06046def12cacdc8f22 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 1.5E-33 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMJ96_CH01516 085f038e02eba06046def12cacdc8f22 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 1.5E-33 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMJ96_CH01516 085f038e02eba06046def12cacdc8f22 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 1.5E-33 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMJ96_CH01516 085f038e02eba06046def12cacdc8f22 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 1.5E-33 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMJ96_CH01516 085f038e02eba06046def12cacdc8f22 140 SUPERFAMILY SSF54919 1 139 1.31E-53 T 12-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMJ96_CH01516 085f038e02eba06046def12cacdc8f22 140 SMART SM00562 3 140 1.1E-74 T 12-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMJ96_CH01516 085f038e02eba06046def12cacdc8f22 140 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 33.279 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMJ96_CH01388 a13aacfee554b03655480b67a5856751 291 Gene3D G3DSA:3.40.50.10490 113 288 7.7E-25 T 12-10-2018 AMJ96_CH01388 a13aacfee554b03655480b67a5856751 291 SUPERFAMILY SSF53697 120 272 1.05E-18 T 12-10-2018 AMJ96_CH01388 a13aacfee554b03655480b67a5856751 291 Pfam PF01380 SIS domain 146 269 1.2E-23 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMJ96_CH01388 a13aacfee554b03655480b67a5856751 291 SUPERFAMILY SSF46689 17 93 7.88E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH01388 a13aacfee554b03655480b67a5856751 291 Pfam PF01418 Helix-turn-helix domain, rpiR family 21 85 1.0E-7 T 12-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AMJ96_CH01388 a13aacfee554b03655480b67a5856751 291 Gene3D G3DSA:1.10.10.10 15 90 5.4E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01639 52177f3c2b1b53233b96cefd37ecd6b6 386 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 27 172 2.2E-54 T 12-10-2018 AMJ96_CH01639 52177f3c2b1b53233b96cefd37ecd6b6 386 Gene3D G3DSA:3.40.30.10 93 188 5.2E-25 T 12-10-2018 AMJ96_CH01639 52177f3c2b1b53233b96cefd37ecd6b6 386 SUPERFAMILY SSF52833 18 175 3.91E-51 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH01639 52177f3c2b1b53233b96cefd37ecd6b6 386 Gene3D G3DSA:1.10.10.1590 16 89 1.4E-28 T 12-10-2018 AMJ96_CH01639 52177f3c2b1b53233b96cefd37ecd6b6 386 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 26 172 1.5E-58 T 12-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01587 c6455a47cef344bb6a563d2f3249e5db 445 Gene3D G3DSA:3.40.190.10 162 427 5.0E-78 T 12-10-2018 AMJ96_CH01587 c6455a47cef344bb6a563d2f3249e5db 445 Gene3D G3DSA:3.40.190.10 68 393 5.0E-78 T 12-10-2018 AMJ96_CH01587 c6455a47cef344bb6a563d2f3249e5db 445 Pfam PF13416 Bacterial extracellular solute-binding protein 61 374 1.7E-34 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH01587 c6455a47cef344bb6a563d2f3249e5db 445 SUPERFAMILY SSF53850 42 442 2.82E-61 T 12-10-2018 AMJ96_CH03361 39514e0fb4a787f05d91222e9e219133 251 Gene3D G3DSA:1.10.260.40 28 90 3.2E-7 T 12-10-2018 AMJ96_CH03361 39514e0fb4a787f05d91222e9e219133 251 SMART SM00530 32 86 0.0015 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH03361 39514e0fb4a787f05d91222e9e219133 251 SUPERFAMILY SSF47413 26 84 3.6E-7 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH03977 3a7126c9cf80d4c22c9e13423e252464 402 Gene3D G3DSA:3.50.50.60 6 392 5.0E-65 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03977 3a7126c9cf80d4c22c9e13423e252464 402 SUPERFAMILY SSF160996 195 341 1.44E-10 T 12-10-2018 AMJ96_CH03977 3a7126c9cf80d4c22c9e13423e252464 402 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 6 394 6.9E-81 T 12-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like AMJ96_CH03977 3a7126c9cf80d4c22c9e13423e252464 402 TIGRFAM TIGR03862 flavo_PP4765: flavoprotein, TIGR03862 family 27 400 5.6E-156 T 12-10-2018 IPR022460 Conserved hyptotheical protein CHP03862, flavoprotein, PP4765 AMJ96_CH03977 3a7126c9cf80d4c22c9e13423e252464 402 Pfam PF03486 HI0933-like protein 5 394 1.3E-96 T 12-10-2018 AMJ96_CH03977 3a7126c9cf80d4c22c9e13423e252464 402 Gene3D G3DSA:1.10.8.260 270 325 5.0E-65 T 12-10-2018 IPR023166 HI0933-like insert domain superfamily AMJ96_CH03977 3a7126c9cf80d4c22c9e13423e252464 402 Gene3D G3DSA:2.40.30.10 191 342 5.0E-65 T 12-10-2018 AMJ96_CH03977 3a7126c9cf80d4c22c9e13423e252464 402 SUPERFAMILY SSF51905 1 396 3.58E-45 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00103 3aeb9d9aad8ae9fd5eba4c8a48047c4e 291 SUPERFAMILY SSF51215 12 162 4.18E-19 T 12-10-2018 IPR037923 Transcription regulator HTH-like AMJ96_PC00103 3aeb9d9aad8ae9fd5eba4c8a48047c4e 291 Gene3D G3DSA:2.60.120.280 23 142 3.5E-6 T 12-10-2018 AMJ96_PC00103 3aeb9d9aad8ae9fd5eba4c8a48047c4e 291 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 232 275 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_PC00103 3aeb9d9aad8ae9fd5eba4c8a48047c4e 291 SUPERFAMILY SSF46689 232 281 4.93E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PC00103 3aeb9d9aad8ae9fd5eba4c8a48047c4e 291 Pfam PF02311 AraC-like ligand binding domain 36 160 1.2E-19 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AMJ96_PC00103 3aeb9d9aad8ae9fd5eba4c8a48047c4e 291 Gene3D G3DSA:1.10.10.60 176 283 8.4E-29 T 12-10-2018 AMJ96_PC00103 3aeb9d9aad8ae9fd5eba4c8a48047c4e 291 Pfam PF12833 Helix-turn-helix domain 201 280 1.3E-22 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PC00103 3aeb9d9aad8ae9fd5eba4c8a48047c4e 291 SUPERFAMILY SSF46689 181 229 4.48E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PC00103 3aeb9d9aad8ae9fd5eba4c8a48047c4e 291 SMART SM00342 195 279 7.1E-27 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PC00103 3aeb9d9aad8ae9fd5eba4c8a48047c4e 291 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 248 263 2.0E-7 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_PC00103 3aeb9d9aad8ae9fd5eba4c8a48047c4e 291 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 263 279 2.0E-7 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_CH01202 3dd4ab1358041cb0176d8ad4ec5e9f42 240 Gene3D G3DSA:1.10.10.10 172 238 5.8E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01202 3dd4ab1358041cb0176d8ad4ec5e9f42 240 SUPERFAMILY SSF46894 168 238 2.99E-15 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH01202 3dd4ab1358041cb0176d8ad4ec5e9f42 240 Pfam PF00196 Bacterial regulatory proteins, luxR family 178 232 1.0E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH01202 3dd4ab1358041cb0176d8ad4ec5e9f42 240 SUPERFAMILY SSF75516 17 168 1.83E-23 T 12-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily AMJ96_CH01202 3dd4ab1358041cb0176d8ad4ec5e9f42 240 Pfam PF03472 Autoinducer binding domain 21 164 4.1E-27 T 12-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain AMJ96_CH01202 3dd4ab1358041cb0176d8ad4ec5e9f42 240 SMART SM00421 175 232 8.0E-15 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH01202 3dd4ab1358041cb0176d8ad4ec5e9f42 240 Gene3D G3DSA:3.30.450.80 13 171 3.0E-18 T 12-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily AMJ96_CH01202 3dd4ab1358041cb0176d8ad4ec5e9f42 240 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 192 208 4.1E-5 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH01202 3dd4ab1358041cb0176d8ad4ec5e9f42 240 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 192 4.1E-5 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH01202 3dd4ab1358041cb0176d8ad4ec5e9f42 240 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 208 220 4.1E-5 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PA00296 8b272bd645a22e26fb2cf5cee436336f 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 5.4E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00296 8b272bd645a22e26fb2cf5cee436336f 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 5.4E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00296 8b272bd645a22e26fb2cf5cee436336f 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 5.4E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00296 8b272bd645a22e26fb2cf5cee436336f 242 Pfam PF00106 short chain dehydrogenase 8 196 1.9E-54 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00296 8b272bd645a22e26fb2cf5cee436336f 242 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_PA00296 8b272bd645a22e26fb2cf5cee436336f 242 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 184 0.0021 T 12-10-2018 AMJ96_PA00296 8b272bd645a22e26fb2cf5cee436336f 242 Gene3D G3DSA:3.40.50.720 1 242 9.5E-71 T 12-10-2018 AMJ96_PA00296 8b272bd645a22e26fb2cf5cee436336f 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 1.3E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00296 8b272bd645a22e26fb2cf5cee436336f 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.3E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00296 8b272bd645a22e26fb2cf5cee436336f 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.3E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00296 8b272bd645a22e26fb2cf5cee436336f 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.3E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00296 8b272bd645a22e26fb2cf5cee436336f 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.3E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00296 8b272bd645a22e26fb2cf5cee436336f 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 204 224 1.3E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00296 8b272bd645a22e26fb2cf5cee436336f 242 SUPERFAMILY SSF51735 3 233 9.65E-68 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00146 c4d49eeeb204fb6ff7e116217020c0fe 394 Gene3D G3DSA:2.120.10.10 36 315 2.3E-31 T 12-10-2018 AMJ96_PD00146 c4d49eeeb204fb6ff7e116217020c0fe 394 SUPERFAMILY SSF50939 39 391 6.17E-49 T 12-10-2018 IPR036278 Sialidase superfamily KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 AMJ96_PD00146 c4d49eeeb204fb6ff7e116217020c0fe 394 Pfam PF13088 BNR repeat-like domain 51 374 1.2E-66 T 12-10-2018 IPR011040 Sialidase KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 AMJ96_CH03079 4dc9f2821d7c3c1f20f842b224d0b589 273 Gene3D G3DSA:1.10.3720.10 2 262 2.2E-41 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03079 4dc9f2821d7c3c1f20f842b224d0b589 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 269 1.1E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03079 4dc9f2821d7c3c1f20f842b224d0b589 273 SUPERFAMILY SSF161098 6 259 2.99E-45 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03386 95b568dc30d90b53abe4a0e59f0bcd4b 453 Pfam PF05951 Bacterial protein of unknown function (DUF882) 49 201 5.6E-73 T 12-10-2018 IPR010275 Protein of unknown function DUF882 AMJ96_CH03386 95b568dc30d90b53abe4a0e59f0bcd4b 453 Gene3D G3DSA:3.30.1380.10 94 206 1.0E-9 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMJ96_CH03386 95b568dc30d90b53abe4a0e59f0bcd4b 453 SUPERFAMILY SSF55166 82 206 3.66E-34 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMJ96_PC00325 da6dd06ee289650862a1c3726c164982 207 Pfam PF07811 TadE-like protein 16 58 1.8E-6 T 12-10-2018 IPR012495 TadE-like AMJ96_CH00177 953bb7bf15cafe0993c03441f9e95db5 274 PIRSF PIRSF000161 4 273 5.9E-76 T 12-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMJ96_CH00177 953bb7bf15cafe0993c03441f9e95db5 274 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 6 270 8.2E-80 T 12-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMJ96_CH00177 953bb7bf15cafe0993c03441f9e95db5 274 Gene3D G3DSA:3.40.50.720 9 269 3.9E-92 T 12-10-2018 AMJ96_CH00177 953bb7bf15cafe0993c03441f9e95db5 274 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 155 172 - T 12-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMJ96_CH00177 953bb7bf15cafe0993c03441f9e95db5 274 Gene3D G3DSA:3.30.360.10 131 239 3.9E-92 T 12-10-2018 AMJ96_CH00177 953bb7bf15cafe0993c03441f9e95db5 274 SUPERFAMILY SSF51735 5 271 9.53E-46 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00177 953bb7bf15cafe0993c03441f9e95db5 274 SUPERFAMILY SSF55347 131 241 3.92E-34 T 12-10-2018 AMJ96_CH00177 953bb7bf15cafe0993c03441f9e95db5 274 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 6 129 2.3E-32 T 12-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMJ96_CH00177 953bb7bf15cafe0993c03441f9e95db5 274 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 6 270 32.457 T 12-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMJ96_CH00177 953bb7bf15cafe0993c03441f9e95db5 274 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 132 269 1.4E-41 T 12-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMJ96_PB00009 536023d59555db232e05bc7ab9f06198 413 SUPERFAMILY SSF56349 210 410 1.41E-38 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMJ96_PB00009 536023d59555db232e05bc7ab9f06198 413 Gene3D G3DSA:1.10.443.10 211 402 2.2E-38 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMJ96_PB00009 536023d59555db232e05bc7ab9f06198 413 SUPERFAMILY SSF47823 79 207 1.02E-6 T 12-10-2018 AMJ96_PB00009 536023d59555db232e05bc7ab9f06198 413 Pfam PF00589 Phage integrase family 215 402 4.7E-14 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMJ96_CH02978 3328d723052d2dd330fba6ed00a16dee 332 Pfam PF00700 Bacterial flagellin C-terminal helical region 244 325 3.6E-16 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMJ96_CH02978 3328d723052d2dd330fba6ed00a16dee 332 Pfam PF00669 Bacterial flagellin N-terminal helical region 13 132 2.3E-18 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMJ96_CH02978 3328d723052d2dd330fba6ed00a16dee 332 SUPERFAMILY SSF64518 2 330 4.32E-51 T 12-10-2018 AMJ96_CH01635 68cbfdecbdb7b056c8f4077716691839 194 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 73 180 2.0E-23 T 12-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01635 68cbfdecbdb7b056c8f4077716691839 194 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 36 187 39.36 T 12-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01635 68cbfdecbdb7b056c8f4077716691839 194 Gene3D G3DSA:3.40.50.12280 31 194 5.9E-77 T 12-10-2018 AMJ96_CH01635 68cbfdecbdb7b056c8f4077716691839 194 SUPERFAMILY SSF56770 45 189 5.63E-65 T 12-10-2018 AMJ96_CH01635 68cbfdecbdb7b056c8f4077716691839 194 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 154 170 - T 12-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01635 68cbfdecbdb7b056c8f4077716691839 194 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 47 188 9.6E-73 T 12-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH02268 bcb180d0d8ba762d1592813ae539378f 201 Pfam PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP 35 193 1.5E-68 T 12-10-2018 IPR010319 Transglutaminase-like cysteine peptidase, predicted AMJ96_CH02268 bcb180d0d8ba762d1592813ae539378f 201 Gene3D G3DSA:3.10.620.30 64 199 1.3E-24 T 12-10-2018 AMJ96_PD00262 80a316648f442ed8f461273a31c67b1d 213 SUPERFAMILY SSF161098 4 203 5.36E-44 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00262 80a316648f442ed8f461273a31c67b1d 213 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 38 211 5.1E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00262 80a316648f442ed8f461273a31c67b1d 213 Gene3D G3DSA:1.10.3720.10 1 213 1.9E-50 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 Gene3D G3DSA:1.10.150.20 774 917 8.3E-103 T 12-10-2018 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 Pfam PF00476 DNA polymerase family A 615 997 2.0E-143 T 12-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 Gene3D G3DSA:3.30.420.10 376 605 1.1E-60 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 SUPERFAMILY SSF47807 177 291 3.29E-32 T 12-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 PRINTS PR00868 DNA-polymerase family A (pol I) signature 795 808 9.2E-68 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 PRINTS PR00868 DNA-polymerase family A (pol I) signature 819 844 9.2E-68 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 PRINTS PR00868 DNA-polymerase family A (pol I) signature 765 788 9.2E-68 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 PRINTS PR00868 DNA-polymerase family A (pol I) signature 856 867 9.2E-68 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 PRINTS PR00868 DNA-polymerase family A (pol I) signature 743 758 9.2E-68 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 PRINTS PR00868 DNA-polymerase family A (pol I) signature 910 926 9.2E-68 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 PRINTS PR00868 DNA-polymerase family A (pol I) signature 878 889 9.2E-68 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 PRINTS PR00868 DNA-polymerase family A (pol I) signature 720 742 9.2E-68 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 Gene3D G3DSA:1.20.1060.10 607 723 7.3E-38 T 12-10-2018 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 SMART SM00479 399 583 4.3E-23 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 SMART SM00482 751 959 5.8E-120 T 12-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 SMART SM00475 5 268 1.3E-130 T 12-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 Pfam PF01612 3'-5' exonuclease 379 581 2.6E-30 T 12-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 Gene3D G3DSA:3.30.70.370 729 995 8.3E-103 T 12-10-2018 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 SUPERFAMILY SSF56672 589 999 2.45E-147 T 12-10-2018 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 6 176 4.3E-55 T 12-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 TIGRFAM TIGR00593 pola: DNA polymerase I 7 999 2.7E-279 T 12-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 Gene3D G3DSA:3.40.50.1010 7 284 7.0E-94 T 12-10-2018 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 177 270 6.8E-31 T 12-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 ProSitePatterns PS00447 DNA polymerase family A signature. 819 838 - T 12-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 SUPERFAMILY SSF53098 375 582 1.97E-48 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 SMART SM00474 379 582 3.7E-29 T 12-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 SUPERFAMILY SSF88723 5 176 3.6E-53 T 12-10-2018 IPR029060 PIN-like domain superfamily AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 Gene3D G3DSA:1.10.150.20 180 253 7.0E-94 T 12-10-2018 AMJ96_CH00158 8b1b81aa92c0866899c7fad12c592bdc 999 SMART SM00279 179 214 1.3E-14 T 12-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 AMJ96_PD00261 269d1be774b3151e661b9d1bb3904847 712 SUPERFAMILY SSF51703 4 542 6.8E-226 T 12-10-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AMJ96_PD00261 269d1be774b3151e661b9d1bb3904847 712 Pfam PF02310 B12 binding domain 582 697 2.1E-18 T 12-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 AMJ96_PD00261 269d1be774b3151e661b9d1bb3904847 712 Pfam PF01642 Methylmalonyl-CoA mutase 28 540 1.7E-240 T 12-10-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AMJ96_PD00261 269d1be774b3151e661b9d1bb3904847 712 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 26 544 3.4E-266 T 12-10-2018 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AMJ96_PD00261 269d1be774b3151e661b9d1bb3904847 712 Gene3D G3DSA:3.20.20.240 1 557 4.9E-245 T 12-10-2018 AMJ96_PD00261 269d1be774b3151e661b9d1bb3904847 712 ProSitePatterns PS00544 Methylmalonyl-CoA mutase signature. 369 394 - T 12-10-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AMJ96_PD00261 269d1be774b3151e661b9d1bb3904847 712 SUPERFAMILY SSF52242 548 705 8.37E-54 T 12-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 AMJ96_PD00261 269d1be774b3151e661b9d1bb3904847 712 Gene3D G3DSA:3.40.50.280 563 712 8.0E-47 T 12-10-2018 AMJ96_PD00261 269d1be774b3151e661b9d1bb3904847 712 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 580 706 1.1E-53 T 12-10-2018 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AMJ96_CH03338 14b552a4745350c3874496c874151d7f 353 Pfam PF00144 Beta-lactamase 25 326 6.1E-27 T 12-10-2018 IPR001466 Beta-lactamase-related AMJ96_CH03338 14b552a4745350c3874496c874151d7f 353 Gene3D G3DSA:3.40.710.10 8 338 1.3E-61 T 12-10-2018 AMJ96_CH03338 14b552a4745350c3874496c874151d7f 353 SUPERFAMILY SSF56601 11 338 2.72E-67 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMJ96_CH03743 5a0349229d9144b029743cfb5a646828 340 ProSitePatterns PS00158 Fructose-bisphosphate aldolase class-I active site. 214 224 - T 12-10-2018 IPR029768 Fructose-bisphosphate aldolase class-I active site KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03743 5a0349229d9144b029743cfb5a646828 340 Pfam PF00274 Fructose-bisphosphate aldolase class-I 5 338 4.3E-139 T 12-10-2018 IPR000741 Fructose-bisphosphate aldolase, class-I GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH03743 5a0349229d9144b029743cfb5a646828 340 SUPERFAMILY SSF51569 2 338 1.26E-128 T 12-10-2018 AMJ96_CH03743 5a0349229d9144b029743cfb5a646828 340 Gene3D G3DSA:3.20.20.70 1 340 1.6E-153 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_PB00280 fdb8be14be7e43daf280865762fc76eb 310 Pfam PF01545 Cation efflux family 12 220 1.1E-32 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AMJ96_PB00280 fdb8be14be7e43daf280865762fc76eb 310 Gene3D G3DSA:1.20.1510.10 9 220 1.0E-16 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMJ96_PB00280 fdb8be14be7e43daf280865762fc76eb 310 SUPERFAMILY SSF161111 6 218 3.79E-28 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily AMJ96_CH00371 34ed8c9f854eb25214af9e1765468d1b 92 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 16.648 T 12-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH00371 34ed8c9f854eb25214af9e1765468d1b 92 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 2.8E-22 T 12-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH00371 34ed8c9f854eb25214af9e1765468d1b 92 SUPERFAMILY SSF46992 3 86 9.16E-28 T 12-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH00371 34ed8c9f854eb25214af9e1765468d1b 92 Gene3D G3DSA:1.20.58.110 1 87 2.4E-25 T 12-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH00371 34ed8c9f854eb25214af9e1765468d1b 92 Pfam PF01649 Ribosomal protein S20 2 84 3.1E-24 T 12-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH00371 34ed8c9f854eb25214af9e1765468d1b 92 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 12 87 6.0E-17 T 12-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_PD00442 f449e5d075ef3ea0c3c10244f5acf03f 117 Pfam PF05899 Protein of unknown function (DUF861) 41 113 8.6E-24 T 12-10-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 AMJ96_PD00442 f449e5d075ef3ea0c3c10244f5acf03f 117 Gene3D G3DSA:2.60.120.10 2 115 1.0E-26 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PD00442 f449e5d075ef3ea0c3c10244f5acf03f 117 SUPERFAMILY SSF51182 11 115 3.69E-18 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH00125 13027d742c839288b1c12f4f1ca75faf 151 SUPERFAMILY SSF55729 3 145 3.14E-23 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH00125 13027d742c839288b1c12f4f1ca75faf 151 Gene3D G3DSA:3.40.630.30 2 151 2.4E-33 T 12-10-2018 AMJ96_CH00125 13027d742c839288b1c12f4f1ca75faf 151 Pfam PF00583 Acetyltransferase (GNAT) family 43 140 9.5E-12 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH01792 f499f7d214854fb393809cfa9b0242ad 369 PIRSF PIRSF009283 8 364 1.6E-107 T 12-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 AMJ96_CH01792 f499f7d214854fb393809cfa9b0242ad 369 Gene3D G3DSA:3.10.180.10 13 162 8.2E-44 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01792 f499f7d214854fb393809cfa9b0242ad 369 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 16 151 3.3E-50 T 12-10-2018 AMJ96_CH01792 f499f7d214854fb393809cfa9b0242ad 369 Gene3D G3DSA:3.10.180.10 163 365 3.9E-63 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01792 f499f7d214854fb393809cfa9b0242ad 369 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 168 285 6.2E-18 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH01792 f499f7d214854fb393809cfa9b0242ad 369 SUPERFAMILY SSF54593 14 351 1.02E-78 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01792 f499f7d214854fb393809cfa9b0242ad 369 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 23 363 7.9E-123 T 12-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 AMJ96_CH01672 3bc1665600ead09e74bbca00e63108df 380 Gene3D G3DSA:1.10.10.10 306 379 6.9E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01672 3bc1665600ead09e74bbca00e63108df 380 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 81 293 3.5E-61 T 12-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 AMJ96_CH01672 3bc1665600ead09e74bbca00e63108df 380 SUPERFAMILY SSF102405 90 294 2.22E-37 T 12-10-2018 AMJ96_CH01672 3bc1665600ead09e74bbca00e63108df 380 Pfam PF02481 DNA recombination-mediator protein A 83 285 1.4E-66 T 12-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 AMJ96_CH01672 3bc1665600ead09e74bbca00e63108df 380 Gene3D G3DSA:3.40.50.450 2 298 3.1E-108 T 12-10-2018 AMJ96_CH03089 2be3cec42cf15cae28d1d08bbc1497f1 241 Gene3D G3DSA:3.30.450.80 8 172 4.1E-31 T 12-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily AMJ96_CH03089 2be3cec42cf15cae28d1d08bbc1497f1 241 Pfam PF00196 Bacterial regulatory proteins, luxR family 178 231 7.1E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH03089 2be3cec42cf15cae28d1d08bbc1497f1 241 SMART SM00421 176 233 4.2E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH03089 2be3cec42cf15cae28d1d08bbc1497f1 241 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 209 221 7.1E-6 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH03089 2be3cec42cf15cae28d1d08bbc1497f1 241 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 193 7.1E-6 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH03089 2be3cec42cf15cae28d1d08bbc1497f1 241 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 193 209 7.1E-6 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH03089 2be3cec42cf15cae28d1d08bbc1497f1 241 Pfam PF03472 Autoinducer binding domain 26 164 3.9E-33 T 12-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain AMJ96_CH03089 2be3cec42cf15cae28d1d08bbc1497f1 241 SUPERFAMILY SSF46894 170 240 9.52E-15 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH03089 2be3cec42cf15cae28d1d08bbc1497f1 241 SUPERFAMILY SSF75516 13 166 1.44E-32 T 12-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily AMJ96_CH03089 2be3cec42cf15cae28d1d08bbc1497f1 241 Gene3D G3DSA:1.10.10.10 174 239 5.8E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03083 cf7d628c172f35b420fb10f2b88296b8 236 SUPERFAMILY SSF48008 84 219 5.75E-24 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH03083 cf7d628c172f35b420fb10f2b88296b8 236 SMART SM00345 21 79 1.2E-12 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH03083 cf7d628c172f35b420fb10f2b88296b8 236 Gene3D G3DSA:1.10.10.10 3 80 5.6E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03083 cf7d628c172f35b420fb10f2b88296b8 236 SUPERFAMILY SSF46785 18 83 6.11E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03083 cf7d628c172f35b420fb10f2b88296b8 236 Pfam PF07729 FCD domain 89 214 2.8E-21 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH03083 cf7d628c172f35b420fb10f2b88296b8 236 Gene3D G3DSA:1.20.120.530 84 225 6.2E-23 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH03083 cf7d628c172f35b420fb10f2b88296b8 236 SMART SM00895 89 215 1.8E-18 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH03083 cf7d628c172f35b420fb10f2b88296b8 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 79 3.5E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH01420 05fb20b6c6a065e73c1788d0518d9abe 714 Pfam PF00664 ABC transporter transmembrane region 163 427 1.1E-37 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_CH01420 05fb20b6c6a065e73c1788d0518d9abe 714 Pfam PF03412 Peptidase C39 family 9 132 7.3E-11 T 12-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 AMJ96_CH01420 05fb20b6c6a065e73c1788d0518d9abe 714 SUPERFAMILY SSF90123 145 457 1.31E-58 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH01420 05fb20b6c6a065e73c1788d0518d9abe 714 Gene3D G3DSA:1.20.1560.10 149 459 1.5E-62 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH01420 05fb20b6c6a065e73c1788d0518d9abe 714 SUPERFAMILY SSF52540 466 710 2.72E-84 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01420 05fb20b6c6a065e73c1788d0518d9abe 714 Gene3D G3DSA:3.90.70.10 6 134 1.1E-22 T 12-10-2018 AMJ96_CH01420 05fb20b6c6a065e73c1788d0518d9abe 714 Pfam PF00005 ABC transporter 490 639 5.1E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH01420 05fb20b6c6a065e73c1788d0518d9abe 714 Gene3D G3DSA:3.40.50.300 467 714 1.2E-84 T 12-10-2018 AMJ96_CH01420 05fb20b6c6a065e73c1788d0518d9abe 714 SMART SM00382 499 685 2.0E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01420 05fb20b6c6a065e73c1788d0518d9abe 714 ProSitePatterns PS00211 ABC transporters family signature. 611 625 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PA00044 1a335b57ba1b94ad950f8762ea4d593b 412 SUPERFAMILY SSF53448 19 273 1.64E-27 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_PA00044 1a335b57ba1b94ad950f8762ea4d593b 412 Pfam PF00535 Glycosyl transferase family 2 26 184 3.8E-18 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_PA00044 1a335b57ba1b94ad950f8762ea4d593b 412 Gene3D G3DSA:3.90.550.10 6 247 1.1E-35 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH02972 cff4a3218049e19db71e821f5bbcaf02 344 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 143 160 - T 12-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AMJ96_CH02972 cff4a3218049e19db71e821f5bbcaf02 344 Gene3D G3DSA:3.20.20.100 1 340 1.1E-136 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH02972 cff4a3218049e19db71e821f5bbcaf02 344 Pfam PF00248 Aldo/keto reductase family 16 319 1.4E-69 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_CH02972 cff4a3218049e19db71e821f5bbcaf02 344 SUPERFAMILY SSF51430 1 318 7.73E-99 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH02972 cff4a3218049e19db71e821f5bbcaf02 344 PRINTS PR00069 Aldo-keto reductase signature 112 130 8.5E-5 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH02972 cff4a3218049e19db71e821f5bbcaf02 344 PRINTS PR00069 Aldo-keto reductase signature 143 160 8.5E-5 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_PD00643 fc00d2a0385c846d8e53f4f2a3f70266 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 253 2.3E-52 T 12-10-2018 AMJ96_PD00643 fc00d2a0385c846d8e53f4f2a3f70266 258 Gene3D G3DSA:3.40.50.720 5 256 3.9E-69 T 12-10-2018 AMJ96_PD00643 fc00d2a0385c846d8e53f4f2a3f70266 258 SUPERFAMILY SSF51735 9 254 2.34E-67 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00643 fc00d2a0385c846d8e53f4f2a3f70266 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 4.8E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00643 fc00d2a0385c846d8e53f4f2a3f70266 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 4.8E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00643 fc00d2a0385c846d8e53f4f2a3f70266 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 4.8E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00643 fc00d2a0385c846d8e53f4f2a3f70266 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 4.8E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00643 fc00d2a0385c846d8e53f4f2a3f70266 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.8E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00643 fc00d2a0385c846d8e53f4f2a3f70266 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 4.8E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00643 fc00d2a0385c846d8e53f4f2a3f70266 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 5.7E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00643 fc00d2a0385c846d8e53f4f2a3f70266 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 5.7E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00643 fc00d2a0385c846d8e53f4f2a3f70266 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 5.7E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00532 4b3d2a3e07d06c33dfd8ac1053f9cb03 340 SUPERFAMILY SSF51658 31 311 4.84E-32 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_PD00532 4b3d2a3e07d06c33dfd8ac1053f9cb03 340 Pfam PF01261 Xylose isomerase-like TIM barrel 35 250 1.2E-13 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMJ96_PD00532 4b3d2a3e07d06c33dfd8ac1053f9cb03 340 Gene3D G3DSA:3.20.20.150 3 337 1.9E-75 T 12-10-2018 AMJ96_PD00419 360a98838f4cadabc553bf7aa2f55195 369 SMART SM00382 28 211 9.3E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00419 360a98838f4cadabc553bf7aa2f55195 369 Gene3D G3DSA:3.40.50.300 1 238 4.7E-74 T 12-10-2018 AMJ96_PD00419 360a98838f4cadabc553bf7aa2f55195 369 SUPERFAMILY SSF50331 237 367 2.83E-24 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_PD00419 360a98838f4cadabc553bf7aa2f55195 369 Pfam PF03459 TOBE domain 306 355 9.4E-6 T 12-10-2018 IPR005116 Transport-associated OB, type 1 AMJ96_PD00419 360a98838f4cadabc553bf7aa2f55195 369 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00419 360a98838f4cadabc553bf7aa2f55195 369 Gene3D G3DSA:2.40.50.140 286 352 1.1E-22 T 12-10-2018 AMJ96_PD00419 360a98838f4cadabc553bf7aa2f55195 369 SUPERFAMILY SSF52540 4 242 3.73E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00419 360a98838f4cadabc553bf7aa2f55195 369 Gene3D G3DSA:2.40.50.100 239 365 1.1E-22 T 12-10-2018 AMJ96_PD00419 360a98838f4cadabc553bf7aa2f55195 369 Pfam PF00005 ABC transporter 20 161 2.3E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH01890 1c09575fd13e4ce275ffaa0c500b3981 476 Gene3D G3DSA:3.50.50.60 7 184 5.8E-48 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01890 1c09575fd13e4ce275ffaa0c500b3981 476 Gene3D G3DSA:3.50.50.60 301 475 3.8E-44 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01890 1c09575fd13e4ce275ffaa0c500b3981 476 Hamap MF_01037 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO [trmFO]. 9 468 34.292 T 12-10-2018 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 AMJ96_CH01890 1c09575fd13e4ce275ffaa0c500b3981 476 TIGRFAM TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase 8 429 5.3E-161 T 12-10-2018 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 AMJ96_CH01890 1c09575fd13e4ce275ffaa0c500b3981 476 SUPERFAMILY SSF51905 8 375 1.04E-22 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01890 1c09575fd13e4ce275ffaa0c500b3981 476 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 350 373 - T 12-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 AMJ96_CH01890 1c09575fd13e4ce275ffaa0c500b3981 476 Pfam PF01134 Glucose inhibited division protein A 9 380 2.3E-106 T 12-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 AMJ96_CH04089 553286d1fad67c83560ab04639e8bcfc 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 277 4.2E-22 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH04089 553286d1fad67c83560ab04639e8bcfc 287 Gene3D G3DSA:1.10.3720.10 6 275 3.8E-62 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH04089 553286d1fad67c83560ab04639e8bcfc 287 SUPERFAMILY SSF161098 13 287 3.92E-70 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00217 484938cc7d82cf9815db940ce6b21a31 429 SUPERFAMILY SSF51556 52 371 4.68E-105 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_PD00217 484938cc7d82cf9815db940ce6b21a31 429 Gene3D G3DSA:2.30.40.10 8 405 1.5E-156 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_PD00217 484938cc7d82cf9815db940ce6b21a31 429 Pfam PF07969 Amidohydrolase family 40 400 5.3E-48 T 12-10-2018 IPR013108 Amidohydrolase 3 AMJ96_PD00217 484938cc7d82cf9815db940ce6b21a31 429 Gene3D G3DSA:3.20.20.140 53 360 1.5E-156 T 12-10-2018 AMJ96_PD00217 484938cc7d82cf9815db940ce6b21a31 429 SUPERFAMILY SSF51338 1 403 1.44E-15 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_PA00230 537f2620640188dbc220c7477cf034d4 356 Gene3D G3DSA:3.40.50.2300 156 290 9.3E-56 T 12-10-2018 AMJ96_PA00230 537f2620640188dbc220c7477cf034d4 356 SUPERFAMILY SSF53822 48 329 1.21E-54 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PA00230 537f2620640188dbc220c7477cf034d4 356 Pfam PF13407 Periplasmic binding protein domain 59 308 2.2E-49 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_PA00230 537f2620640188dbc220c7477cf034d4 356 Gene3D G3DSA:3.40.50.2300 76 316 9.3E-56 T 12-10-2018 AMJ96_PA00066 6dba6053856b697625ba6f59b5d5882e 275 SUPERFAMILY SSF51658 9 271 6.77E-20 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_PA00066 6dba6053856b697625ba6f59b5d5882e 275 Gene3D G3DSA:3.20.20.150 1 269 5.6E-30 T 12-10-2018 AMJ96_PA00066 6dba6053856b697625ba6f59b5d5882e 275 Pfam PF01261 Xylose isomerase-like TIM barrel 20 174 1.5E-12 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMJ96_CH02438 07f791cbd4314ba953ccf6d3aae3f86a 94 ProSitePatterns PS00151 Acylphosphatase signature 2. 36 52 - T 12-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMJ96_CH02438 07f791cbd4314ba953ccf6d3aae3f86a 94 SUPERFAMILY SSF54975 6 92 3.92E-26 T 12-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMJ96_CH02438 07f791cbd4314ba953ccf6d3aae3f86a 94 Pfam PF00708 Acylphosphatase 8 92 5.3E-25 T 12-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMJ96_CH02438 07f791cbd4314ba953ccf6d3aae3f86a 94 PRINTS PR00112 Acylphosphatase signature 28 53 4.2E-8 T 12-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMJ96_CH02438 07f791cbd4314ba953ccf6d3aae3f86a 94 PRINTS PR00112 Acylphosphatase signature 7 22 4.2E-8 T 12-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMJ96_CH02438 07f791cbd4314ba953ccf6d3aae3f86a 94 Gene3D G3DSA:3.30.70.100 1 93 7.3E-29 T 12-10-2018 AMJ96_CH02438 07f791cbd4314ba953ccf6d3aae3f86a 94 ProSitePatterns PS00150 Acylphosphatase signature 1. 12 22 - T 12-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AMJ96_CH03042 2e5c4dbe6074393e061250e65610124a 341 SMART SM00418 14 93 9.4E-19 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH03042 2e5c4dbe6074393e061250e65610124a 341 SUPERFAMILY SSF46785 11 108 9.85E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03042 2e5c4dbe6074393e061250e65610124a 341 Pfam PF01022 Bacterial regulatory protein, arsR family 22 66 3.4E-13 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH03042 2e5c4dbe6074393e061250e65610124a 341 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 48 63 6.3E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH03042 2e5c4dbe6074393e061250e65610124a 341 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 16 31 6.3E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH03042 2e5c4dbe6074393e061250e65610124a 341 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 35 46 6.3E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH03042 2e5c4dbe6074393e061250e65610124a 341 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 63 78 6.3E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH03042 2e5c4dbe6074393e061250e65610124a 341 Pfam PF08241 Methyltransferase domain 161 257 1.7E-23 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMJ96_CH03042 2e5c4dbe6074393e061250e65610124a 341 Gene3D G3DSA:3.40.50.150 112 302 2.8E-40 T 12-10-2018 AMJ96_CH03042 2e5c4dbe6074393e061250e65610124a 341 SUPERFAMILY SSF53335 121 308 1.24E-42 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH03042 2e5c4dbe6074393e061250e65610124a 341 Gene3D G3DSA:1.10.10.10 6 108 3.1E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01778 2d644fc0043f1b6c30fa6d1e57915a57 207 SMART SM00448 4 116 9.9E-18 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01778 2d644fc0043f1b6c30fa6d1e57915a57 207 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 200 2.7E-19 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH01778 2d644fc0043f1b6c30fa6d1e57915a57 207 Gene3D G3DSA:3.40.50.12740 4 206 1.5E-54 T 12-10-2018 AMJ96_CH01778 2d644fc0043f1b6c30fa6d1e57915a57 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 2.5E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH01778 2d644fc0043f1b6c30fa6d1e57915a57 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 2.5E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH01778 2d644fc0043f1b6c30fa6d1e57915a57 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 2.5E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH01778 2d644fc0043f1b6c30fa6d1e57915a57 207 SMART SM00421 146 203 1.2E-21 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH01778 2d644fc0043f1b6c30fa6d1e57915a57 207 SUPERFAMILY SSF52172 3 131 3.84E-24 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH01778 2d644fc0043f1b6c30fa6d1e57915a57 207 SUPERFAMILY SSF46894 145 205 4.42E-20 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH01778 2d644fc0043f1b6c30fa6d1e57915a57 207 Pfam PF00072 Response regulator receiver domain 7 116 2.1E-18 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01472 feb565c04cea676188494807888fc1bd 163 SUPERFAMILY SSF51316 5 130 9.83E-44 T 12-10-2018 IPR011057 Mss4-like superfamily AMJ96_CH01472 feb565c04cea676188494807888fc1bd 163 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 28 109 9.9E-20 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMJ96_CH01472 feb565c04cea676188494807888fc1bd 163 Gene3D G3DSA:3.90.1590.10 1 106 1.4E-12 T 12-10-2018 AMJ96_CH02287 10c3232ebfedab839f0288855b78fe59 375 Gene3D G3DSA:3.90.180.10 6 370 5.0E-139 T 12-10-2018 AMJ96_CH02287 10c3232ebfedab839f0288855b78fe59 375 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMJ96_CH02287 10c3232ebfedab839f0288855b78fe59 375 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 3 374 2.6E-176 T 12-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 AMJ96_CH02287 10c3232ebfedab839f0288855b78fe59 375 SUPERFAMILY SSF51735 160 340 9.25E-39 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02287 10c3232ebfedab839f0288855b78fe59 375 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 151 2.4E-24 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_CH02287 10c3232ebfedab839f0288855b78fe59 375 Gene3D G3DSA:3.40.50.720 174 318 5.0E-139 T 12-10-2018 AMJ96_CH02287 10c3232ebfedab839f0288855b78fe59 375 SUPERFAMILY SSF50129 1 186 3.83E-67 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_CH02287 10c3232ebfedab839f0288855b78fe59 375 Pfam PF00107 Zinc-binding dehydrogenase 197 326 2.3E-16 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_CH02287 10c3232ebfedab839f0288855b78fe59 375 SUPERFAMILY SSF50129 324 375 4.0E-13 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_CH02547 cc4ba9c16d86af12acdd84a6889dc81d 142 SUPERFAMILY SSF141523 27 129 2.09E-26 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH02547 cc4ba9c16d86af12acdd84a6889dc81d 142 Pfam PF03734 L,D-transpeptidase catalytic domain 30 140 1.9E-14 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMJ96_CH02547 cc4ba9c16d86af12acdd84a6889dc81d 142 Gene3D G3DSA:2.40.440.10 23 140 1.1E-24 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH00994 9238a3e5661cd68f41bf5187c635de6b 300 PRINTS PR00691 Adhesin B signature 53 71 5.7E-23 T 12-10-2018 IPR006129 Adhesin B GO:0007155 AMJ96_CH00994 9238a3e5661cd68f41bf5187c635de6b 300 PRINTS PR00691 Adhesin B signature 72 91 5.7E-23 T 12-10-2018 IPR006129 Adhesin B GO:0007155 AMJ96_CH00994 9238a3e5661cd68f41bf5187c635de6b 300 PRINTS PR00691 Adhesin B signature 232 249 5.7E-23 T 12-10-2018 IPR006129 Adhesin B GO:0007155 AMJ96_CH00994 9238a3e5661cd68f41bf5187c635de6b 300 PRINTS PR00691 Adhesin B signature 183 200 5.7E-23 T 12-10-2018 IPR006129 Adhesin B GO:0007155 AMJ96_CH00994 9238a3e5661cd68f41bf5187c635de6b 300 PRINTS PR00691 Adhesin B signature 28 49 5.7E-23 T 12-10-2018 IPR006129 Adhesin B GO:0007155 AMJ96_CH00994 9238a3e5661cd68f41bf5187c635de6b 300 PRINTS PR00691 Adhesin B signature 254 272 5.7E-23 T 12-10-2018 IPR006129 Adhesin B GO:0007155 AMJ96_CH00994 9238a3e5661cd68f41bf5187c635de6b 300 PRINTS PR00691 Adhesin B signature 275 293 5.7E-23 T 12-10-2018 IPR006129 Adhesin B GO:0007155 AMJ96_CH00994 9238a3e5661cd68f41bf5187c635de6b 300 Pfam PF01297 Zinc-uptake complex component A periplasmic 31 295 5.2E-81 T 12-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 AMJ96_CH00994 9238a3e5661cd68f41bf5187c635de6b 300 SUPERFAMILY SSF53807 24 296 3.78E-85 T 12-10-2018 AMJ96_CH00994 9238a3e5661cd68f41bf5187c635de6b 300 PRINTS PR00690 Adhesin family signature 183 204 3.3E-26 T 12-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AMJ96_CH00994 9238a3e5661cd68f41bf5187c635de6b 300 PRINTS PR00690 Adhesin family signature 262 281 3.3E-26 T 12-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AMJ96_CH00994 9238a3e5661cd68f41bf5187c635de6b 300 PRINTS PR00690 Adhesin family signature 59 72 3.3E-26 T 12-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AMJ96_CH00994 9238a3e5661cd68f41bf5187c635de6b 300 PRINTS PR00690 Adhesin family signature 236 254 3.3E-26 T 12-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AMJ96_CH00994 9238a3e5661cd68f41bf5187c635de6b 300 PRINTS PR00690 Adhesin family signature 72 89 3.3E-26 T 12-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AMJ96_CH00994 9238a3e5661cd68f41bf5187c635de6b 300 PRINTS PR00690 Adhesin family signature 28 46 3.3E-26 T 12-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 AMJ96_CH00994 9238a3e5661cd68f41bf5187c635de6b 300 Gene3D G3DSA:3.40.50.1980 27 184 4.3E-49 T 12-10-2018 AMJ96_CH00994 9238a3e5661cd68f41bf5187c635de6b 300 Gene3D G3DSA:3.40.50.1980 185 296 3.7E-41 T 12-10-2018 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 SMART SM00316 281 353 3.4E-26 T 12-10-2018 IPR022967 RNA-binding domain, S1 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 SMART SM00316 368 440 2.4E-20 T 12-10-2018 IPR022967 RNA-binding domain, S1 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 SMART SM00316 25 93 2.8E-9 T 12-10-2018 IPR022967 RNA-binding domain, S1 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 SMART SM00316 109 177 1.2E-7 T 12-10-2018 IPR022967 RNA-binding domain, S1 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 SMART SM00316 457 530 2.1E-13 T 12-10-2018 IPR022967 RNA-binding domain, S1 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 SMART SM00316 196 266 5.0E-28 T 12-10-2018 IPR022967 RNA-binding domain, S1 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 Gene3D G3DSA:2.40.50.140 452 538 2.8E-11 T 12-10-2018 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 Gene3D G3DSA:2.40.50.140 275 366 5.8E-30 T 12-10-2018 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 SUPERFAMILY SSF50249 12 118 5.74E-20 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 Gene3D G3DSA:2.40.50.140 192 274 1.8E-29 T 12-10-2018 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 Gene3D G3DSA:2.40.50.140 367 448 5.6E-21 T 12-10-2018 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 SUPERFAMILY SSF50249 261 361 5.15E-27 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 9 530 5.1E-189 T 12-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 PIRSF PIRSF002111 2 544 3.5E-192 T 12-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 Pfam PF00575 S1 RNA binding domain 107 177 4.2E-14 T 12-10-2018 IPR003029 S1 domain GO:0003676 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 Pfam PF00575 S1 RNA binding domain 457 530 3.7E-12 T 12-10-2018 IPR003029 S1 domain GO:0003676 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 Pfam PF00575 S1 RNA binding domain 280 353 1.2E-20 T 12-10-2018 IPR003029 S1 domain GO:0003676 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 Pfam PF00575 S1 RNA binding domain 25 92 7.4E-11 T 12-10-2018 IPR003029 S1 domain GO:0003676 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 Pfam PF00575 S1 RNA binding domain 367 440 9.3E-19 T 12-10-2018 IPR003029 S1 domain GO:0003676 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 Pfam PF00575 S1 RNA binding domain 195 266 1.3E-20 T 12-10-2018 IPR003029 S1 domain GO:0003676 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 PRINTS PR00681 Ribosomal protein S1 signature 45 59 4.3E-83 T 12-10-2018 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 PRINTS PR00681 Ribosomal protein S1 signature 296 315 4.3E-83 T 12-10-2018 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 PRINTS PR00681 Ribosomal protein S1 signature 336 354 4.3E-83 T 12-10-2018 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 PRINTS PR00681 Ribosomal protein S1 signature 27 45 4.3E-83 T 12-10-2018 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 PRINTS PR00681 Ribosomal protein S1 signature 114 130 4.3E-83 T 12-10-2018 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 PRINTS PR00681 Ribosomal protein S1 signature 90 109 4.3E-83 T 12-10-2018 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 PRINTS PR00681 Ribosomal protein S1 signature 161 181 4.3E-83 T 12-10-2018 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 PRINTS PR00681 Ribosomal protein S1 signature 218 239 4.3E-83 T 12-10-2018 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 PRINTS PR00681 Ribosomal protein S1 signature 132 149 4.3E-83 T 12-10-2018 AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 SUPERFAMILY SSF50249 94 181 1.86E-12 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 SUPERFAMILY SSF50249 348 444 4.92E-21 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 SUPERFAMILY SSF50249 457 543 1.5E-14 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 SUPERFAMILY SSF50249 195 283 5.08E-27 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH00099 30666768c3cee9d8364696e090bea081 567 Gene3D G3DSA:2.40.50.140 12 106 1.0E-17 T 12-10-2018 AMJ96_CH03728 f0dbd33475858392703dee933fcaa999 343 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 1 23 3.3E-13 T 12-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMJ96_CH03728 f0dbd33475858392703dee933fcaa999 343 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 58 87 3.3E-13 T 12-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMJ96_CH03728 f0dbd33475858392703dee933fcaa999 343 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 111 136 3.3E-13 T 12-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMJ96_CH03728 f0dbd33475858392703dee933fcaa999 343 SUPERFAMILY SSF48179 185 332 6.8E-37 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_CH03728 f0dbd33475858392703dee933fcaa999 343 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 12-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMJ96_CH03728 f0dbd33475858392703dee933fcaa999 343 Gene3D G3DSA:1.10.1040.10 186 338 8.8E-57 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMJ96_CH03728 f0dbd33475858392703dee933fcaa999 343 SUPERFAMILY SSF51735 1 155 5.03E-43 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03728 f0dbd33475858392703dee933fcaa999 343 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 235 335 9.6E-7 T 12-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMJ96_CH03728 f0dbd33475858392703dee933fcaa999 343 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 187 215 3.4E-9 T 12-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMJ96_CH03728 f0dbd33475858392703dee933fcaa999 343 SMART SM01350 187 343 4.4E-5 T 12-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AMJ96_CH03728 f0dbd33475858392703dee933fcaa999 343 Gene3D G3DSA:3.40.50.720 1 185 2.6E-47 T 12-10-2018 AMJ96_CH03728 f0dbd33475858392703dee933fcaa999 343 TIGRFAM TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating) 1 340 2.5E-126 T 12-10-2018 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type GO:0055114 AMJ96_CH03728 f0dbd33475858392703dee933fcaa999 343 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 152 3.3E-37 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMJ96_PA00213 244012e756e2d78ae0608809fb7f944f 223 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 204 2.1E-16 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PA00213 244012e756e2d78ae0608809fb7f944f 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 1.1E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PA00213 244012e756e2d78ae0608809fb7f944f 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 1.1E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PA00213 244012e756e2d78ae0608809fb7f944f 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 1.1E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PA00213 244012e756e2d78ae0608809fb7f944f 223 Gene3D G3DSA:3.40.50.12740 7 210 2.7E-59 T 12-10-2018 AMJ96_PA00213 244012e756e2d78ae0608809fb7f944f 223 Pfam PF00072 Response regulator receiver domain 9 120 2.8E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PA00213 244012e756e2d78ae0608809fb7f944f 223 SUPERFAMILY SSF46894 140 210 6.12E-20 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_PA00213 244012e756e2d78ae0608809fb7f944f 223 SMART SM00421 147 204 4.5E-21 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_PA00213 244012e756e2d78ae0608809fb7f944f 223 SMART SM00448 7 120 1.7E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PA00213 244012e756e2d78ae0608809fb7f944f 223 SUPERFAMILY SSF52172 6 136 8.25E-30 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH04137 0744cf6416fb2857772868d9a8ca08c3 102 Pfam PF03795 YCII-related domain 21 92 4.5E-8 T 12-10-2018 IPR005545 YCII-related AMJ96_CH04137 0744cf6416fb2857772868d9a8ca08c3 102 SUPERFAMILY SSF54909 20 92 2.14E-8 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH01222 b24f0f78b0d37b0824f14c19f363f72b 531 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH01222 b24f0f78b0d37b0824f14c19f363f72b 531 Gene3D G3DSA:3.40.50.300 2 265 3.6E-45 T 12-10-2018 AMJ96_CH01222 b24f0f78b0d37b0824f14c19f363f72b 531 SUPERFAMILY SSF52540 5 208 2.48E-38 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01222 b24f0f78b0d37b0824f14c19f363f72b 531 SMART SM00382 29 211 5.0E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01222 b24f0f78b0d37b0824f14c19f363f72b 531 SMART SM00382 362 530 8.2E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01222 b24f0f78b0d37b0824f14c19f363f72b 531 SUPERFAMILY SSF52540 327 514 2.59E-34 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01222 b24f0f78b0d37b0824f14c19f363f72b 531 Pfam PF00005 ABC transporter 355 482 1.2E-16 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH01222 b24f0f78b0d37b0824f14c19f363f72b 531 Gene3D G3DSA:3.40.50.300 297 527 2.4E-40 T 12-10-2018 AMJ96_CH01222 b24f0f78b0d37b0824f14c19f363f72b 531 Pfam PF00005 ABC transporter 31 167 2.4E-21 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PB00073 20a27b5face8e83a9809f105a7429955 310 Gene3D G3DSA:1.10.443.10 93 306 1.1E-14 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMJ96_PB00073 20a27b5face8e83a9809f105a7429955 310 Pfam PF00589 Phage integrase family 106 182 3.1E-8 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMJ96_PB00073 20a27b5face8e83a9809f105a7429955 310 SUPERFAMILY SSF56349 32 182 8.54E-15 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMJ96_CH02809 26e45882ede1cee96b0b4b5b78822af0 785 Pfam PF00672 HAMP domain 455 501 3.6E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH02809 26e45882ede1cee96b0b4b5b78822af0 785 Gene3D G3DSA:3.30.450.20 244 285 6.3E-15 T 12-10-2018 AMJ96_CH02809 26e45882ede1cee96b0b4b5b78822af0 785 SMART SM00304 454 506 6.3E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH02809 26e45882ede1cee96b0b4b5b78822af0 785 SUPERFAMILY SSF158472 455 502 7.98E-7 T 12-10-2018 AMJ96_CH02809 26e45882ede1cee96b0b4b5b78822af0 785 SMART SM00331 564 784 2.7E-39 T 12-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMJ96_CH02809 26e45882ede1cee96b0b4b5b78822af0 785 Gene3D G3DSA:3.60.40.10 528 785 1.0E-50 T 12-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMJ96_CH02809 26e45882ede1cee96b0b4b5b78822af0 785 Gene3D G3DSA:1.20.1480.50 413 513 1.6E-8 T 12-10-2018 AMJ96_CH02809 26e45882ede1cee96b0b4b5b78822af0 785 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 590 784 1.8E-35 T 12-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AMJ96_CH02809 26e45882ede1cee96b0b4b5b78822af0 785 Gene3D G3DSA:3.30.450.20 286 317 6.3E-15 T 12-10-2018 AMJ96_CH02610 ffc677e1256ec564a56c951f13e510e4 343 SUPERFAMILY SSF46689 280 331 7.62E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02610 ffc677e1256ec564a56c951f13e510e4 343 SMART SM00342 244 327 5.9E-27 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH02610 ffc677e1256ec564a56c951f13e510e4 343 Pfam PF12833 Helix-turn-helix domain 250 327 2.2E-24 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH02610 ffc677e1256ec564a56c951f13e510e4 343 SUPERFAMILY SSF52317 16 209 7.33E-40 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH02610 ffc677e1256ec564a56c951f13e510e4 343 Gene3D G3DSA:1.10.10.60 224 333 2.8E-33 T 12-10-2018 AMJ96_CH02610 ffc677e1256ec564a56c951f13e510e4 343 SUPERFAMILY SSF46689 229 278 2.69E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02610 ffc677e1256ec564a56c951f13e510e4 343 Pfam PF01965 DJ-1/PfpI family 24 187 1.5E-13 T 12-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 AMJ96_CH02610 ffc677e1256ec564a56c951f13e510e4 343 Gene3D G3DSA:3.40.50.880 9 216 2.8E-51 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH01876 637b43f0dad5649b7c98f4c80b1f8c01 427 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 226 400 5.5E-34 T 12-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH01876 637b43f0dad5649b7c98f4c80b1f8c01 427 Gene3D G3DSA:1.10.287.40 1 106 8.5E-23 T 12-10-2018 AMJ96_CH01876 637b43f0dad5649b7c98f4c80b1f8c01 427 SUPERFAMILY SSF46589 1 114 1.73E-27 T 12-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 AMJ96_CH01876 637b43f0dad5649b7c98f4c80b1f8c01 427 PRINTS PR00981 Seryl-tRNA synthetase signature 316 329 1.4E-27 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMJ96_CH01876 637b43f0dad5649b7c98f4c80b1f8c01 427 PRINTS PR00981 Seryl-tRNA synthetase signature 276 289 1.4E-27 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMJ96_CH01876 637b43f0dad5649b7c98f4c80b1f8c01 427 PRINTS PR00981 Seryl-tRNA synthetase signature 264 276 1.4E-27 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMJ96_CH01876 637b43f0dad5649b7c98f4c80b1f8c01 427 PRINTS PR00981 Seryl-tRNA synthetase signature 333 349 1.4E-27 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMJ96_CH01876 637b43f0dad5649b7c98f4c80b1f8c01 427 PRINTS PR00981 Seryl-tRNA synthetase signature 351 367 1.4E-27 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMJ96_CH01876 637b43f0dad5649b7c98f4c80b1f8c01 427 SUPERFAMILY SSF55681 118 419 3.4E-94 T 12-10-2018 AMJ96_CH01876 637b43f0dad5649b7c98f4c80b1f8c01 427 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 422 38.451 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMJ96_CH01876 637b43f0dad5649b7c98f4c80b1f8c01 427 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 109 4.2E-31 T 12-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 AMJ96_CH01876 637b43f0dad5649b7c98f4c80b1f8c01 427 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 417 1.2E-150 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMJ96_CH01876 637b43f0dad5649b7c98f4c80b1f8c01 427 Gene3D G3DSA:3.30.930.10 107 427 3.2E-114 T 12-10-2018 AMJ96_CH01876 637b43f0dad5649b7c98f4c80b1f8c01 427 PIRSF PIRSF001529 1 426 2.9E-162 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AMJ96_CH01352 e6ee14ca60b7a4598cc40530a7c6686d 164 SUPERFAMILY SSF54909 71 158 1.61E-17 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH01352 e6ee14ca60b7a4598cc40530a7c6686d 164 Gene3D G3DSA:1.10.10.10 12 62 2.5E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01352 e6ee14ca60b7a4598cc40530a7c6686d 164 SMART SM00344 11 120 2.2E-43 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMJ96_CH01352 e6ee14ca60b7a4598cc40530a7c6686d 164 ProSitePatterns PS00519 AsnC-type HTH domain signature. 29 55 - T 12-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AMJ96_CH01352 e6ee14ca60b7a4598cc40530a7c6686d 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 11 27 3.8E-16 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH01352 e6ee14ca60b7a4598cc40530a7c6686d 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 38 57 3.8E-16 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH01352 e6ee14ca60b7a4598cc40530a7c6686d 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 27 38 3.8E-16 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH01352 e6ee14ca60b7a4598cc40530a7c6686d 164 Pfam PF01037 Lrp/AsnC ligand binding domain 77 150 6.0E-18 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMJ96_CH01352 e6ee14ca60b7a4598cc40530a7c6686d 164 SUPERFAMILY SSF46785 11 70 6.92E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01352 e6ee14ca60b7a4598cc40530a7c6686d 164 Pfam PF13412 Winged helix-turn-helix DNA-binding 11 58 1.6E-20 T 12-10-2018 AMJ96_CH01352 e6ee14ca60b7a4598cc40530a7c6686d 164 Gene3D G3DSA:3.30.70.920 64 148 3.6E-23 T 12-10-2018 AMJ96_CH01866 a33c9a22e5900e38ae89ff4b27773333 110 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 91 108 - T 12-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 AMJ96_CH01866 a33c9a22e5900e38ae89ff4b27773333 110 SUPERFAMILY SSF89360 6 98 5.23E-31 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMJ96_CH01866 a33c9a22e5900e38ae89ff4b27773333 110 Gene3D G3DSA:2.60.300.12 5 110 1.1E-36 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMJ96_CH01866 a33c9a22e5900e38ae89ff4b27773333 110 Pfam PF01521 Iron-sulphur cluster biosynthesis 6 105 6.9E-21 T 12-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AMJ96_CH01866 a33c9a22e5900e38ae89ff4b27773333 110 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 6 109 3.6E-37 T 12-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 AMJ96_PA00202 f89daa25b51b70d319e2ed51594214a3 184 SUPERFAMILY SSF52540 10 172 3.37E-23 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00202 f89daa25b51b70d319e2ed51594214a3 184 Pfam PF13671 AAA domain 12 146 4.3E-9 T 12-10-2018 AMJ96_PA00202 f89daa25b51b70d319e2ed51594214a3 184 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 12 165 1.2E-59 T 12-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 AMJ96_PA00202 f89daa25b51b70d319e2ed51594214a3 184 Gene3D G3DSA:3.40.50.300 3 182 1.2E-63 T 12-10-2018 AMJ96_PB00313 c923cf89d9bf54e1b4a470778d05a464 312 Pfam PF13289 SIR2-like domain 121 277 6.2E-21 T 12-10-2018 IPR039444 SIR2-like domain AMJ96_PD00171 f4f25eb672f39ebdbf01fd0b8786175d 329 Pfam PF00107 Zinc-binding dehydrogenase 156 271 8.6E-15 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_PD00171 f4f25eb672f39ebdbf01fd0b8786175d 329 Gene3D G3DSA:3.90.180.10 265 329 3.8E-6 T 12-10-2018 AMJ96_PD00171 f4f25eb672f39ebdbf01fd0b8786175d 329 SMART SM00829 19 326 0.0039 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_PD00171 f4f25eb672f39ebdbf01fd0b8786175d 329 SUPERFAMILY SSF51735 127 293 1.5E-29 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00171 f4f25eb672f39ebdbf01fd0b8786175d 329 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 71 85 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMJ96_PD00171 f4f25eb672f39ebdbf01fd0b8786175d 329 Gene3D G3DSA:3.40.50.720 134 264 5.5E-26 T 12-10-2018 AMJ96_PD00171 f4f25eb672f39ebdbf01fd0b8786175d 329 Gene3D G3DSA:3.90.180.10 2 127 4.4E-24 T 12-10-2018 AMJ96_PD00171 f4f25eb672f39ebdbf01fd0b8786175d 329 SUPERFAMILY SSF50129 11 317 9.14E-28 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_PD00171 f4f25eb672f39ebdbf01fd0b8786175d 329 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 35 96 9.8E-10 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_CH01668 bc86041f2c46bf18b57818d915085f6a 394 Gene3D G3DSA:1.20.1250.20 18 199 4.3E-18 T 12-10-2018 AMJ96_CH01668 bc86041f2c46bf18b57818d915085f6a 394 Gene3D G3DSA:1.20.1250.20 213 394 2.4E-16 T 12-10-2018 AMJ96_CH01668 bc86041f2c46bf18b57818d915085f6a 394 Pfam PF07690 Major Facilitator Superfamily 30 234 7.0E-16 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH01668 bc86041f2c46bf18b57818d915085f6a 394 SUPERFAMILY SSF103473 16 387 2.75E-46 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH03491 c6df9fff86790cd8a768037b248ef1e6 332 SUPERFAMILY SSF52317 14 202 2.04E-46 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH03491 c6df9fff86790cd8a768037b248ef1e6 332 SUPERFAMILY SSF46689 274 324 2.02E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03491 c6df9fff86790cd8a768037b248ef1e6 332 SUPERFAMILY SSF46689 221 270 4.16E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03491 c6df9fff86790cd8a768037b248ef1e6 332 Pfam PF12833 Helix-turn-helix domain 243 321 5.6E-19 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH03491 c6df9fff86790cd8a768037b248ef1e6 332 SMART SM00342 237 320 1.7E-24 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH03491 c6df9fff86790cd8a768037b248ef1e6 332 Pfam PF01965 DJ-1/PfpI family 21 181 1.7E-16 T 12-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 AMJ96_CH03491 c6df9fff86790cd8a768037b248ef1e6 332 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 274 316 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_CH03491 c6df9fff86790cd8a768037b248ef1e6 332 Gene3D G3DSA:3.40.50.880 7 209 5.3E-53 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH03491 c6df9fff86790cd8a768037b248ef1e6 332 Gene3D G3DSA:1.10.10.60 221 325 8.4E-24 T 12-10-2018 AMJ96_PD00445 1eb7833ab98be88160ba12b25c7b258c 485 Gene3D G3DSA:3.40.605.10 20 474 1.4E-173 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_PD00445 1eb7833ab98be88160ba12b25c7b258c 485 Gene3D G3DSA:3.40.309.10 262 451 1.4E-173 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_PD00445 1eb7833ab98be88160ba12b25c7b258c 485 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 283 294 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMJ96_PD00445 1eb7833ab98be88160ba12b25c7b258c 485 Pfam PF00171 Aldehyde dehydrogenase family 20 478 1.5E-162 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_PD00445 1eb7833ab98be88160ba12b25c7b258c 485 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 255 262 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMJ96_PD00445 1eb7833ab98be88160ba12b25c7b258c 485 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 31 477 4.6E-201 T 12-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 AMJ96_PD00445 1eb7833ab98be88160ba12b25c7b258c 485 SUPERFAMILY SSF53720 10 482 3.8E-163 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_PC00364 8907e014ce6fc193dd830c515e473b7c 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_PC00364 8907e014ce6fc193dd830c515e473b7c 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 3.4E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00364 8907e014ce6fc193dd830c515e473b7c 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 3.4E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00364 8907e014ce6fc193dd830c515e473b7c 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 3.4E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00364 8907e014ce6fc193dd830c515e473b7c 244 Gene3D G3DSA:3.40.50.720 3 242 1.3E-67 T 12-10-2018 AMJ96_PC00364 8907e014ce6fc193dd830c515e473b7c 244 Pfam PF00106 short chain dehydrogenase 6 196 4.8E-54 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00364 8907e014ce6fc193dd830c515e473b7c 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 3.4E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00364 8907e014ce6fc193dd830c515e473b7c 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 3.4E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00364 8907e014ce6fc193dd830c515e473b7c 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 3.4E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00364 8907e014ce6fc193dd830c515e473b7c 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 3.4E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00364 8907e014ce6fc193dd830c515e473b7c 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 3.4E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00364 8907e014ce6fc193dd830c515e473b7c 244 SUPERFAMILY SSF51735 2 238 1.13E-64 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00364 8907e014ce6fc193dd830c515e473b7c 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 209 1.4E-4 T 12-10-2018 AMJ96_PC00040 c728087b343d64434bd1ebca573c714c 390 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 201 388 3.4E-25 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00040 c728087b343d64434bd1ebca573c714c 390 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 40 91 2.9E-9 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMJ96_PC00040 c728087b343d64434bd1ebca573c714c 390 SUPERFAMILY SSF161098 178 376 1.28E-19 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00040 c728087b343d64434bd1ebca573c714c 390 Gene3D G3DSA:1.10.3720.10 172 386 5.4E-17 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03940 f6e5e22ea56ab372618572925a42a284 219 PIRSF PIRSF033239 13 215 1.5E-60 T 12-10-2018 IPR010331 Exopolysaccharide synthesis, ExoD AMJ96_CH03940 f6e5e22ea56ab372618572925a42a284 219 Pfam PF06055 Exopolysaccharide synthesis, ExoD 24 200 2.0E-57 T 12-10-2018 IPR010331 Exopolysaccharide synthesis, ExoD AMJ96_CH00960 491f96f81ce59d1815dda6e355afaf55 402 SMART SM00271 2 60 3.9E-22 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH00960 491f96f81ce59d1815dda6e355afaf55 402 SUPERFAMILY SSF49493 235 317 6.41E-12 T 12-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMJ96_CH00960 491f96f81ce59d1815dda6e355afaf55 402 Gene3D G3DSA:1.10.287.110 1 93 1.4E-23 T 12-10-2018 IPR036869 Chaperone J-domain superfamily AMJ96_CH00960 491f96f81ce59d1815dda6e355afaf55 402 Pfam PF01556 DnaJ C terminal domain 264 379 2.3E-19 T 12-10-2018 IPR002939 Chaperone DnaJ, C-terminal AMJ96_CH00960 491f96f81ce59d1815dda6e355afaf55 402 Pfam PF00226 DnaJ domain 3 65 3.3E-21 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH00960 491f96f81ce59d1815dda6e355afaf55 402 ProSitePatterns PS00636 Nt-dnaJ domain signature. 45 64 - T 12-10-2018 IPR018253 DnaJ domain, conserved site AMJ96_CH00960 491f96f81ce59d1815dda6e355afaf55 402 Gene3D G3DSA:2.60.260.20 235 302 2.7E-8 T 12-10-2018 AMJ96_CH00960 491f96f81ce59d1815dda6e355afaf55 402 Gene3D G3DSA:2.60.260.20 304 400 1.5E-16 T 12-10-2018 AMJ96_CH00960 491f96f81ce59d1815dda6e355afaf55 402 SUPERFAMILY SSF46565 2 67 3.14E-21 T 12-10-2018 IPR036869 Chaperone J-domain superfamily AMJ96_CH00960 491f96f81ce59d1815dda6e355afaf55 402 SUPERFAMILY SSF49493 308 386 6.8E-11 T 12-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AMJ96_CH00960 491f96f81ce59d1815dda6e355afaf55 402 PRINTS PR00625 DnaJ domain signature 23 38 3.3E-14 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH00960 491f96f81ce59d1815dda6e355afaf55 402 PRINTS PR00625 DnaJ domain signature 40 60 3.3E-14 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH00960 491f96f81ce59d1815dda6e355afaf55 402 PRINTS PR00625 DnaJ domain signature 5 23 3.3E-14 T 12-10-2018 IPR001623 DnaJ domain AMJ96_CH01030 2189818e070a5a322f483974eeb368c3 573 Pfam PF13761 Domain of unknown function (DUF4166) 412 570 7.2E-34 T 12-10-2018 IPR025311 Domain of unknown function DUF4166 AMJ96_CH01030 2189818e070a5a322f483974eeb368c3 573 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 9 127 1.2E-7 T 12-10-2018 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 AMJ96_CH01030 2189818e070a5a322f483974eeb368c3 573 Gene3D G3DSA:3.40.50.720 7 177 2.3E-19 T 12-10-2018 AMJ96_CH03656 6fabe74e7f88d493ab7ea47638bd71d4 389 Pfam PF09594 Glycosyltransferase family 87 85 305 5.7E-30 T 12-10-2018 IPR018584 Glycosyltransferase family 87 GO:0016758 AMJ96_CH03143 7d8ab8501cdaf723f2d009160f081d93 97 SUPERFAMILY SSF46785 4 95 1.59E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03143 7d8ab8501cdaf723f2d009160f081d93 97 Gene3D G3DSA:1.10.10.10 1 97 2.2E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03143 7d8ab8501cdaf723f2d009160f081d93 97 Pfam PF12840 Helix-turn-helix domain 4 75 8.4E-19 T 12-10-2018 AMJ96_CH03143 7d8ab8501cdaf723f2d009160f081d93 97 SMART SM00418 5 95 2.9E-14 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_PB00179 f6f070fe9dd0cb3650f707b058bf3628 421 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 158 183 2.6E-5 T 12-10-2018 AMJ96_PB00179 f6f070fe9dd0cb3650f707b058bf3628 421 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 294 301 2.6E-5 T 12-10-2018 AMJ96_PB00179 f6f070fe9dd0cb3650f707b058bf3628 421 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 2.6E-5 T 12-10-2018 AMJ96_PB00179 f6f070fe9dd0cb3650f707b058bf3628 421 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 322 4.6E-50 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_PB00179 f6f070fe9dd0cb3650f707b058bf3628 421 SUPERFAMILY SSF51905 149 333 2.52E-19 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PB00179 f6f070fe9dd0cb3650f707b058bf3628 421 SUPERFAMILY SSF51905 4 211 4.03E-31 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PB00179 f6f070fe9dd0cb3650f707b058bf3628 421 Gene3D G3DSA:3.50.50.100 1 394 5.7E-112 T 12-10-2018 AMJ96_PB00179 f6f070fe9dd0cb3650f707b058bf3628 421 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 98 116 8.2E-9 T 12-10-2018 AMJ96_PB00179 f6f070fe9dd0cb3650f707b058bf3628 421 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 279 301 8.2E-9 T 12-10-2018 AMJ96_PB00179 f6f070fe9dd0cb3650f707b058bf3628 421 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 8.2E-9 T 12-10-2018 AMJ96_PB00179 f6f070fe9dd0cb3650f707b058bf3628 421 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 158 176 8.2E-9 T 12-10-2018 AMJ96_CH03536 18d0d67d8f59ae261bb7632d4ca23876 373 Gene3D G3DSA:3.40.50.2300 143 271 6.6E-128 T 12-10-2018 AMJ96_CH03536 18d0d67d8f59ae261bb7632d4ca23876 373 SUPERFAMILY SSF53822 24 369 3.21E-94 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH03536 18d0d67d8f59ae261bb7632d4ca23876 373 Pfam PF13458 Periplasmic binding protein 25 361 2.1E-63 T 12-10-2018 IPR028081 Leucine-binding protein domain AMJ96_CH03536 18d0d67d8f59ae261bb7632d4ca23876 373 Gene3D G3DSA:3.40.50.2300 32 345 6.6E-128 T 12-10-2018 AMJ96_CH03536 18d0d67d8f59ae261bb7632d4ca23876 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 328 343 1.7E-30 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_CH03536 18d0d67d8f59ae261bb7632d4ca23876 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 25 41 1.7E-30 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_CH03536 18d0d67d8f59ae261bb7632d4ca23876 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 276 289 1.7E-30 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_CH03536 18d0d67d8f59ae261bb7632d4ca23876 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 47 63 1.7E-30 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_CH03536 18d0d67d8f59ae261bb7632d4ca23876 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 66 84 1.7E-30 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_CH03536 18d0d67d8f59ae261bb7632d4ca23876 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 87 97 1.7E-30 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_CH03536 18d0d67d8f59ae261bb7632d4ca23876 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 253 271 1.7E-30 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_PA00290 d62c36aef8349b62fc394e56b9c7dda8 335 Gene3D G3DSA:3.90.180.10 16 314 4.6E-82 T 12-10-2018 AMJ96_PA00290 d62c36aef8349b62fc394e56b9c7dda8 335 SUPERFAMILY SSF50129 1 173 7.55E-42 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_PA00290 d62c36aef8349b62fc394e56b9c7dda8 335 Pfam PF00107 Zinc-binding dehydrogenase 174 291 1.0E-12 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_PA00290 d62c36aef8349b62fc394e56b9c7dda8 335 SUPERFAMILY SSF51735 134 289 2.32E-23 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PA00290 d62c36aef8349b62fc394e56b9c7dda8 335 Gene3D G3DSA:3.40.50.720 148 280 4.6E-82 T 12-10-2018 AMJ96_PA00290 d62c36aef8349b62fc394e56b9c7dda8 335 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 130 1.0E-29 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_CH00541 292ac342980c4924b4f905de8dff0332 372 SUPERFAMILY SSF111369 57 283 3.27E-17 T 12-10-2018 AMJ96_CH00541 292ac342980c4924b4f905de8dff0332 372 Gene3D G3DSA:2.40.30.170 53 288 4.4E-58 T 12-10-2018 AMJ96_CH00541 292ac342980c4924b4f905de8dff0332 372 Gene3D G3DSA:1.10.287.470 101 174 4.4E-58 T 12-10-2018 AMJ96_CH00541 292ac342980c4924b4f905de8dff0332 372 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 66 269 1.1E-13 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMJ96_CH00541 292ac342980c4924b4f905de8dff0332 372 Gene3D G3DSA:2.40.50.100 67 214 4.4E-58 T 12-10-2018 AMJ96_CH00541 292ac342980c4924b4f905de8dff0332 372 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 362 6.2E-59 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMJ96_CH00541 292ac342980c4924b4f905de8dff0332 372 Gene3D G3DSA:2.40.420.20 48 360 4.4E-58 T 12-10-2018 AMJ96_CH01571 209c5bf9a03a9d4f871d4a9e25f54071 104 Pfam PF06823 Protein of unknown function (DUF1236) 44 104 1.5E-21 T 12-10-2018 IPR009642 Protein of unknown function DUF1236 AMJ96_CH00575 90a6106393be75cc5db0e4e7f259e8af 598 Gene3D G3DSA:2.40.110.10 161 281 3.0E-93 T 12-10-2018 AMJ96_CH00575 90a6106393be75cc5db0e4e7f259e8af 598 SUPERFAMILY SSF47203 287 475 3.22E-46 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMJ96_CH00575 90a6106393be75cc5db0e4e7f259e8af 598 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 34 1.4E-11 T 12-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria AMJ96_CH00575 90a6106393be75cc5db0e4e7f259e8af 598 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 467 593 1.8E-36 T 12-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain AMJ96_CH00575 90a6106393be75cc5db0e4e7f259e8af 598 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 157 1.0E-17 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMJ96_CH00575 90a6106393be75cc5db0e4e7f259e8af 598 SUPERFAMILY SSF56645 37 278 2.62E-61 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMJ96_CH00575 90a6106393be75cc5db0e4e7f259e8af 598 Gene3D G3DSA:1.20.140.10 282 449 3.0E-93 T 12-10-2018 AMJ96_CH00575 90a6106393be75cc5db0e4e7f259e8af 598 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 451 7.0E-15 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMJ96_CH00575 90a6106393be75cc5db0e4e7f259e8af 598 Gene3D G3DSA:1.10.540.10 45 160 3.0E-93 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMJ96_CH00575 90a6106393be75cc5db0e4e7f259e8af 598 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 271 7.7E-17 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMJ96_CH00900 592d19a555567b56b5b703de52431d2f 286 Gene3D G3DSA:3.90.226.10 22 226 2.1E-54 T 12-10-2018 AMJ96_CH00900 592d19a555567b56b5b703de52431d2f 286 SUPERFAMILY SSF52096 18 223 1.86E-33 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_CH00900 592d19a555567b56b5b703de52431d2f 286 Pfam PF01343 Peptidase family S49 87 229 1.3E-29 T 12-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AMJ96_CH00900 592d19a555567b56b5b703de52431d2f 286 Gene3D G3DSA:3.40.1750.20 127 193 2.1E-54 T 12-10-2018 AMJ96_CH04179 955b05f09385c67224732cf4ce8f670c 186 SUPERFAMILY SSF88659 124 182 9.53E-15 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_CH04179 955b05f09385c67224732cf4ce8f670c 186 Pfam PF08281 Sigma-70, region 4 126 177 1.1E-13 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_CH04179 955b05f09385c67224732cf4ce8f670c 186 Pfam PF04542 Sigma-70 region 2 28 95 3.7E-14 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH04179 955b05f09385c67224732cf4ce8f670c 186 Gene3D G3DSA:1.10.10.10 92 183 1.2E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH04179 955b05f09385c67224732cf4ce8f670c 186 SUPERFAMILY SSF88946 2 108 1.1E-20 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH04179 955b05f09385c67224732cf4ce8f670c 186 Gene3D G3DSA:1.10.1740.10 9 91 1.5E-22 T 12-10-2018 AMJ96_CH04179 955b05f09385c67224732cf4ce8f670c 186 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 24 181 1.6E-23 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMJ96_PD00390 d8af12053b7520079bbe4660560702a0 368 SUPERFAMILY SSF50331 236 358 1.36E-25 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_PD00390 d8af12053b7520079bbe4660560702a0 368 Pfam PF00005 ABC transporter 19 161 2.2E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00390 d8af12053b7520079bbe4660560702a0 368 SUPERFAMILY SSF52540 4 242 1.19E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00390 d8af12053b7520079bbe4660560702a0 368 Gene3D G3DSA:3.40.50.300 4 221 2.1E-68 T 12-10-2018 AMJ96_PD00390 d8af12053b7520079bbe4660560702a0 368 Gene3D G3DSA:2.40.50.940 222 352 9.5E-29 T 12-10-2018 AMJ96_PD00390 d8af12053b7520079bbe4660560702a0 368 Gene3D G3DSA:2.40.50.140 288 343 9.5E-29 T 12-10-2018 AMJ96_PD00390 d8af12053b7520079bbe4660560702a0 368 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00390 d8af12053b7520079bbe4660560702a0 368 SMART SM00382 28 211 8.7E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00459 5d3fd0db495971dfdaac8ecd1883d17f 551 SUPERFAMILY SSF52540 5 255 4.2E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00459 5d3fd0db495971dfdaac8ecd1883d17f 551 Gene3D G3DSA:3.40.50.300 1 281 1.2E-75 T 12-10-2018 AMJ96_PD00459 5d3fd0db495971dfdaac8ecd1883d17f 551 ProSitePatterns PS00211 ABC transporters family signature. 424 438 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00459 5d3fd0db495971dfdaac8ecd1883d17f 551 SMART SM00382 309 509 3.5E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00459 5d3fd0db495971dfdaac8ecd1883d17f 551 SMART SM00382 34 233 1.2E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00459 5d3fd0db495971dfdaac8ecd1883d17f 551 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 268 2.2E-5 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PD00459 5d3fd0db495971dfdaac8ecd1883d17f 551 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 503 541 8.8E-5 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PD00459 5d3fd0db495971dfdaac8ecd1883d17f 551 Pfam PF00005 ABC transporter 300 452 2.9E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00459 5d3fd0db495971dfdaac8ecd1883d17f 551 SUPERFAMILY SSF52540 278 521 8.05E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00459 5d3fd0db495971dfdaac8ecd1883d17f 551 Gene3D G3DSA:3.40.50.300 282 527 2.7E-60 T 12-10-2018 AMJ96_PD00459 5d3fd0db495971dfdaac8ecd1883d17f 551 Pfam PF00005 ABC transporter 26 183 1.9E-23 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH04309 019668836aa6f0e6d91cb5c4abd2896f 345 Gene3D G3DSA:3.40.50.300 1 244 1.3E-74 T 12-10-2018 AMJ96_CH04309 019668836aa6f0e6d91cb5c4abd2896f 345 Pfam PF00005 ABC transporter 19 163 1.6E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH04309 019668836aa6f0e6d91cb5c4abd2896f 345 SUPERFAMILY SSF50331 242 343 6.38E-8 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH04309 019668836aa6f0e6d91cb5c4abd2896f 345 SUPERFAMILY SSF52540 3 239 7.76E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04309 019668836aa6f0e6d91cb5c4abd2896f 345 Pfam PF08402 TOBE domain 271 337 2.9E-5 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_CH04309 019668836aa6f0e6d91cb5c4abd2896f 345 SMART SM00382 28 213 1.4E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04309 019668836aa6f0e6d91cb5c4abd2896f 345 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03443 511f1801e3561a8195604ee9f20f3a43 310 Gene3D G3DSA:3.10.180.10 67 212 4.4E-105 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH03443 511f1801e3561a8195604ee9f20f3a43 310 SUPERFAMILY SSF54593 4 283 1.16E-44 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH03443 511f1801e3561a8195604ee9f20f3a43 310 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 268 1.0E-22 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH03443 511f1801e3561a8195604ee9f20f3a43 310 Gene3D G3DSA:3.10.180.10 7 305 4.4E-105 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_PB00192 66d2f18d0612ca660cafc5231091eb96 233 Gene3D G3DSA:1.20.58.430 27 219 7.4E-46 T 12-10-2018 IPR023220 Type IV secretion system, VirB5-domain AMJ96_PB00192 66d2f18d0612ca660cafc5231091eb96 233 SUPERFAMILY SSF101082 27 219 3.4E-42 T 12-10-2018 AMJ96_PB00192 66d2f18d0612ca660cafc5231091eb96 233 TIGRFAM TIGR02791 VirB5: P-type DNA transfer protein VirB5 11 219 3.3E-69 T 12-10-2018 IPR014158 Type IV secretion system, VirB5 AMJ96_PB00192 66d2f18d0612ca660cafc5231091eb96 233 Pfam PF07996 Type IV secretion system proteins 27 217 2.0E-56 T 12-10-2018 IPR014158 Type IV secretion system, VirB5 AMJ96_PD00051 83a385542e3614a2e7b9e711904789e7 430 Pfam PF13416 Bacterial extracellular solute-binding protein 44 357 1.0E-33 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PD00051 83a385542e3614a2e7b9e711904789e7 430 Gene3D G3DSA:3.40.190.10 22 421 1.1E-73 T 12-10-2018 AMJ96_PD00051 83a385542e3614a2e7b9e711904789e7 430 SUPERFAMILY SSF53850 23 418 1.78E-68 T 12-10-2018 AMJ96_CH02598 eae9a97f255244930a2be9b3639d1f02 183 Gene3D G3DSA:1.20.58.320 2 81 1.8E-22 T 12-10-2018 AMJ96_CH02598 eae9a97f255244930a2be9b3639d1f02 183 Pfam PF06041 Bacterial protein of unknown function (DUF924) 10 180 3.0E-54 T 12-10-2018 IPR010323 Protein of unknown function DUF924 AMJ96_CH02598 eae9a97f255244930a2be9b3639d1f02 183 Gene3D G3DSA:1.25.40.10 83 183 5.6E-33 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02598 eae9a97f255244930a2be9b3639d1f02 183 SUPERFAMILY SSF48452 4 179 6.45E-61 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02011 0dde456151f29abab1d785a99b67b7e9 192 Gene3D G3DSA:3.40.50.300 13 157 2.2E-12 T 12-10-2018 AMJ96_CH02011 0dde456151f29abab1d785a99b67b7e9 192 SUPERFAMILY SSF52540 16 118 3.1E-16 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02209 5cdfcf5707060f51f8ece0af9221b257 717 Gene3D G3DSA:2.30.30.60 540 589 3.9E-11 T 12-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily AMJ96_CH02209 5cdfcf5707060f51f8ece0af9221b257 717 Gene3D G3DSA:3.30.70.100 593 680 2.2E-19 T 12-10-2018 AMJ96_CH02209 5cdfcf5707060f51f8ece0af9221b257 717 SUPERFAMILY SSF50182 525 587 2.06E-10 T 12-10-2018 IPR010920 LSM domain superfamily AMJ96_CH02209 5cdfcf5707060f51f8ece0af9221b257 717 SUPERFAMILY SSF82689 588 689 5.49E-14 T 12-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AMJ96_CH02209 5cdfcf5707060f51f8ece0af9221b257 717 SUPERFAMILY SSF82861 468 523 1.57E-11 T 12-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AMJ96_CH02209 5cdfcf5707060f51f8ece0af9221b257 717 Pfam PF00924 Mechanosensitive ion channel 482 682 4.7E-38 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMJ96_PD00018 c0a7cff416988dba932402a14751d118 327 Gene3D G3DSA:3.40.190.10 171 276 3.6E-58 T 12-10-2018 AMJ96_PD00018 c0a7cff416988dba932402a14751d118 327 Pfam PF03466 LysR substrate binding domain 104 304 3.4E-24 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PD00018 c0a7cff416988dba932402a14751d118 327 Gene3D G3DSA:3.40.190.10 90 301 3.6E-58 T 12-10-2018 AMJ96_PD00018 c0a7cff416988dba932402a14751d118 327 SUPERFAMILY SSF46785 3 84 7.48E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00018 c0a7cff416988dba932402a14751d118 327 Gene3D G3DSA:1.10.10.10 1 88 2.4E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00018 c0a7cff416988dba932402a14751d118 327 SUPERFAMILY SSF53850 90 302 1.12E-38 T 12-10-2018 AMJ96_PD00018 c0a7cff416988dba932402a14751d118 327 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 8.3E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00018 c0a7cff416988dba932402a14751d118 327 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 8.3E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00018 c0a7cff416988dba932402a14751d118 327 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 8.3E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00018 c0a7cff416988dba932402a14751d118 327 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 9.9E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00402 295691ccfb4a319b168ac4c6f466dba6 400 Pfam PF00480 ROK family 86 382 4.5E-40 T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AMJ96_PC00402 295691ccfb4a319b168ac4c6f466dba6 400 Pfam PF13412 Winged helix-turn-helix DNA-binding 16 57 3.9E-5 T 12-10-2018 AMJ96_PC00402 295691ccfb4a319b168ac4c6f466dba6 400 SUPERFAMILY SSF46785 12 70 5.38E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00402 295691ccfb4a319b168ac4c6f466dba6 400 Gene3D G3DSA:3.30.420.40 215 354 7.3E-30 T 12-10-2018 AMJ96_PC00402 295691ccfb4a319b168ac4c6f466dba6 400 Gene3D G3DSA:1.10.10.10 3 79 2.1E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00402 295691ccfb4a319b168ac4c6f466dba6 400 Gene3D G3DSA:3.30.420.40 81 214 1.3E-31 T 12-10-2018 AMJ96_PC00402 295691ccfb4a319b168ac4c6f466dba6 400 SUPERFAMILY SSF53067 84 385 2.13E-45 T 12-10-2018 AMJ96_PA00283 5c266185c36cd9d2b7c448034542cf84 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 1.2E-12 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PA00283 5c266185c36cd9d2b7c448034542cf84 212 Gene3D G3DSA:1.10.357.10 16 212 1.2E-65 T 12-10-2018 AMJ96_PA00283 5c266185c36cd9d2b7c448034542cf84 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 1.6E-5 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PA00283 5c266185c36cd9d2b7c448034542cf84 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 1.6E-5 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PA00283 5c266185c36cd9d2b7c448034542cf84 212 SUPERFAMILY SSF48498 86 211 2.08E-37 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_PA00283 5c266185c36cd9d2b7c448034542cf84 212 SUPERFAMILY SSF46689 9 90 1.59E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PC00203 e89d5269da497eb2b248b1674d291118 307 Gene3D G3DSA:1.10.10.10 5 100 9.1E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00203 e89d5269da497eb2b248b1674d291118 307 SMART SM00418 15 98 2.5E-7 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_PC00203 e89d5269da497eb2b248b1674d291118 307 Pfam PF12840 Helix-turn-helix domain 15 70 6.7E-10 T 12-10-2018 AMJ96_PC00203 e89d5269da497eb2b248b1674d291118 307 SUPERFAMILY SSF46785 15 217 1.3E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00203 e89d5269da497eb2b248b1674d291118 307 PIRSF PIRSF030050 3 307 2.4E-125 T 12-10-2018 IPR016943 Uncharacterised conserved protein UCP030050, HTH transcriptional regulator, BH1869 AMJ96_CH00081 bf9f963d00928ab6602197b30f18866a 387 Gene3D G3DSA:3.20.20.500 1 382 1.1E-185 T 12-10-2018 AMJ96_CH00081 bf9f963d00928ab6602197b30f18866a 387 SUPERFAMILY SSF51569 57 326 7.32E-9 T 12-10-2018 AMJ96_CH00081 bf9f963d00928ab6602197b30f18866a 387 Pfam PF06187 Protein of unknown function (DUF993) 6 386 1.6E-188 T 12-10-2018 IPR009334 Protein of unknown function DUF993 AMJ96_PB00339 b858699e456f1cfc199e5f8edb242890 81 Pfam PF01527 Transposase 2 58 5.4E-19 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMJ96_PB00339 b858699e456f1cfc199e5f8edb242890 81 Gene3D G3DSA:1.10.10.60 1 80 2.5E-5 T 12-10-2018 AMJ96_PB00339 b858699e456f1cfc199e5f8edb242890 81 SUPERFAMILY SSF46689 5 56 1.16E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH00361 41d7a10b6a9998fceb044a10f121945d 553 Pfam PF01175 Urocanase Rossmann-like domain 138 346 2.7E-77 T 12-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_CH00361 41d7a10b6a9998fceb044a10f121945d 553 Gene3D G3DSA:3.40.50.10730 139 346 1.5E-220 T 12-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_CH00361 41d7a10b6a9998fceb044a10f121945d 553 Gene3D G3DSA:3.40.1770.10 19 539 1.5E-220 T 12-10-2018 AMJ96_CH00361 41d7a10b6a9998fceb044a10f121945d 553 PIRSF PIRSF001423 4 553 1.3E-234 T 12-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_CH00361 41d7a10b6a9998fceb044a10f121945d 553 TIGRFAM TIGR01228 hutU: urocanate hydratase 14 547 3.2E-208 T 12-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_CH00361 41d7a10b6a9998fceb044a10f121945d 553 Pfam PF17392 Urocanase C-terminal domain 349 542 2.0E-75 T 12-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_CH00361 41d7a10b6a9998fceb044a10f121945d 553 Pfam PF17391 Urocanase N-terminal domain 16 135 1.3E-44 T 12-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_CH00361 41d7a10b6a9998fceb044a10f121945d 553 Hamap MF_00577 Urocanate hydratase [hutU]. 4 551 44.535 T 12-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_CH00361 41d7a10b6a9998fceb044a10f121945d 553 SUPERFAMILY SSF111326 8 549 6.15E-219 T 12-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_CH00185 8536c07099896115a02c6ec68f74414d 545 SMART SM00382 37 237 4.0E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00185 8536c07099896115a02c6ec68f74414d 545 SMART SM00382 314 506 9.1E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00185 8536c07099896115a02c6ec68f74414d 545 Gene3D G3DSA:3.40.50.300 6 278 7.1E-88 T 12-10-2018 AMJ96_CH00185 8536c07099896115a02c6ec68f74414d 545 Gene3D G3DSA:3.40.50.300 279 542 7.8E-81 T 12-10-2018 AMJ96_CH00185 8536c07099896115a02c6ec68f74414d 545 SUPERFAMILY SSF52540 300 528 1.05E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00185 8536c07099896115a02c6ec68f74414d 545 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00185 8536c07099896115a02c6ec68f74414d 545 Pfam PF00005 ABC transporter 306 457 3.4E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00185 8536c07099896115a02c6ec68f74414d 545 ProSitePatterns PS00211 ABC transporters family signature. 429 443 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00185 8536c07099896115a02c6ec68f74414d 545 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 239 271 4.3E-5 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_CH00185 8536c07099896115a02c6ec68f74414d 545 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 508 537 0.0018 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_CH00185 8536c07099896115a02c6ec68f74414d 545 Pfam PF00005 ABC transporter 29 187 1.9E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00185 8536c07099896115a02c6ec68f74414d 545 SUPERFAMILY SSF52540 8 259 2.0E-71 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01550 1a711c09ba8eb9465ac201424f1b47d2 171 Pfam PF13463 Winged helix DNA-binding domain 55 120 2.1E-10 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH01550 1a711c09ba8eb9465ac201424f1b47d2 171 SMART SM00347 48 149 1.7E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH01550 1a711c09ba8eb9465ac201424f1b47d2 171 SUPERFAMILY SSF46785 12 164 1.21E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01550 1a711c09ba8eb9465ac201424f1b47d2 171 ProSitePatterns PS01117 MarR-type HTH domain signature. 86 120 - T 12-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AMJ96_CH01550 1a711c09ba8eb9465ac201424f1b47d2 171 Gene3D G3DSA:1.10.10.10 22 162 1.5E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00174 6012efff6b1deb45349ae4db69e07bee 370 Gene3D G3DSA:3.40.50.2000 20 357 3.4E-35 T 12-10-2018 AMJ96_PD00174 6012efff6b1deb45349ae4db69e07bee 370 SUPERFAMILY SSF53756 19 361 1.36E-46 T 12-10-2018 AMJ96_PD00174 6012efff6b1deb45349ae4db69e07bee 370 Gene3D G3DSA:3.40.50.2000 186 341 3.4E-35 T 12-10-2018 AMJ96_PD00174 6012efff6b1deb45349ae4db69e07bee 370 Pfam PF00534 Glycosyl transferases group 1 249 340 3.3E-14 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 AMJ96_PD00174 6012efff6b1deb45349ae4db69e07bee 370 Pfam PF13439 Glycosyltransferase Family 4 20 185 9.2E-14 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMJ96_PD00218 29daf96ae089eb84d0f6d641a76191a4 259 Pfam PF13649 Methyltransferase domain 32 125 3.1E-21 T 12-10-2018 AMJ96_PD00218 29daf96ae089eb84d0f6d641a76191a4 259 Gene3D G3DSA:3.40.50.150 2 255 4.5E-39 T 12-10-2018 AMJ96_PD00218 29daf96ae089eb84d0f6d641a76191a4 259 SUPERFAMILY SSF53335 6 210 1.48E-34 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH03299 8bfe8209865d7427f4f82cb6a9e44f7c 235 Pfam PF06299 Protein of unknown function (DUF1045) 62 219 4.3E-57 T 12-10-2018 IPR009389 Protein of unknown function DUF1045 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_CH03299 8bfe8209865d7427f4f82cb6a9e44f7c 235 PIRSF PIRSF033328 1 235 1.1E-108 T 12-10-2018 IPR009389 Protein of unknown function DUF1045 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_CH02176 9c2d8936287be1fa747418f3629500cb 169 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 164 2.3E-45 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMJ96_CH02176 9c2d8936287be1fa747418f3629500cb 169 PIRSF PIRSF001467 4 168 1.4E-28 T 12-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 AMJ96_CH02176 9c2d8936287be1fa747418f3629500cb 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 50 62 2.6E-12 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMJ96_CH02176 9c2d8936287be1fa747418f3629500cb 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 129 2.6E-12 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMJ96_CH02176 9c2d8936287be1fa747418f3629500cb 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 130 145 2.6E-12 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMJ96_CH02176 9c2d8936287be1fa747418f3629500cb 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 2.6E-12 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMJ96_CH02176 9c2d8936287be1fa747418f3629500cb 169 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 45 62 - T 12-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 AMJ96_CH02176 9c2d8936287be1fa747418f3629500cb 169 Gene3D G3DSA:2.40.100.10 2 168 9.7E-48 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily AMJ96_CH02176 9c2d8936287be1fa747418f3629500cb 169 SUPERFAMILY SSF50891 10 167 8.77E-46 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily AMJ96_CH03850 2562a129203a0c9bb039d0841eaf2bac 113 TIGRFAM TIGR01374 soxD: sarcosine oxidase, delta subunit family 3 87 8.4E-38 T 12-10-2018 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 AMJ96_CH03850 2562a129203a0c9bb039d0841eaf2bac 113 Pfam PF04267 Sarcosine oxidase, delta subunit family 3 85 4.1E-32 T 12-10-2018 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 AMJ96_CH03850 2562a129203a0c9bb039d0841eaf2bac 113 Gene3D G3DSA:3.30.2270.10 1 100 1.9E-33 T 12-10-2018 IPR038561 Sarcosine oxidase subunit delta superfamily KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 AMJ96_CH00072 f836801959b11613a955d78a571680fe 619 SUPERFAMILY SSF53448 110 384 1.29E-31 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00072 f836801959b11613a955d78a571680fe 619 Gene3D G3DSA:3.90.550.10 100 317 7.4E-30 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00072 f836801959b11613a955d78a571680fe 619 Pfam PF13506 Glycosyl transferase family 21 165 332 2.3E-27 T 12-10-2018 IPR025993 Ceramide glucosyltransferase GO:0016757 KEGG: 00600+2.4.1.80|MetaCyc: PWY-5129|MetaCyc: PWY-7836|MetaCyc: PWY-7838|MetaCyc: PWY-7839|MetaCyc: PWY-7841|Reactome: R-HSA-1660662 AMJ96_CH00295 c44f10df7998de295b006a924b583879 166 ProSitePatterns PS01117 MarR-type HTH domain signature. 93 127 - T 12-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AMJ96_CH00295 c44f10df7998de295b006a924b583879 166 SUPERFAMILY SSF46785 20 165 9.38E-25 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00295 c44f10df7998de295b006a924b583879 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 78 94 7.5E-9 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00295 c44f10df7998de295b006a924b583879 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 114 130 7.5E-9 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00295 c44f10df7998de295b006a924b583879 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 95 110 7.5E-9 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00295 c44f10df7998de295b006a924b583879 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 145 165 7.5E-9 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00295 c44f10df7998de295b006a924b583879 166 Pfam PF12802 MarR family 57 118 5.2E-13 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00295 c44f10df7998de295b006a924b583879 166 Gene3D G3DSA:1.10.10.10 27 166 2.1E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01883 f718e84c9a5c1f3942f501158a8860fd 529 Gene3D G3DSA:2.70.70.10 382 529 1.1E-35 T 12-10-2018 IPR011055 Duplicated hybrid motif AMJ96_CH01883 f718e84c9a5c1f3942f501158a8860fd 529 Gene3D G3DSA:3.10.350.10 294 347 7.5E-15 T 12-10-2018 IPR036779 LysM domain superfamily AMJ96_CH01883 f718e84c9a5c1f3942f501158a8860fd 529 SUPERFAMILY SSF51261 318 528 1.88E-42 T 12-10-2018 IPR011055 Duplicated hybrid motif AMJ96_CH01883 f718e84c9a5c1f3942f501158a8860fd 529 Gene3D G3DSA:3.10.350.10 173 234 1.8E-8 T 12-10-2018 IPR036779 LysM domain superfamily AMJ96_CH01883 f718e84c9a5c1f3942f501158a8860fd 529 SUPERFAMILY SSF54106 184 226 5.89E-5 T 12-10-2018 AMJ96_CH01883 f718e84c9a5c1f3942f501158a8860fd 529 Pfam PF01551 Peptidase family M23 430 524 8.2E-27 T 12-10-2018 IPR016047 Peptidase M23 AMJ96_CH01883 f718e84c9a5c1f3942f501158a8860fd 529 SMART SM00257 297 340 6.9E-14 T 12-10-2018 IPR018392 LysM domain AMJ96_CH01883 f718e84c9a5c1f3942f501158a8860fd 529 SMART SM00257 182 226 2.9E-4 T 12-10-2018 IPR018392 LysM domain AMJ96_CH01883 f718e84c9a5c1f3942f501158a8860fd 529 Pfam PF01476 LysM domain 298 340 4.8E-13 T 12-10-2018 IPR018392 LysM domain AMJ96_CH01883 f718e84c9a5c1f3942f501158a8860fd 529 Pfam PF01476 LysM domain 184 226 1.3E-6 T 12-10-2018 IPR018392 LysM domain AMJ96_PC00267 7c54af06c8c728b8ed61f7dffb177cad 290 Gene3D G3DSA:1.10.3720.10 24 282 6.1E-62 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00267 7c54af06c8c728b8ed61f7dffb177cad 290 SUPERFAMILY SSF161098 20 272 1.96E-53 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00267 7c54af06c8c728b8ed61f7dffb177cad 290 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 23 280 4.0E-125 T 12-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 AMJ96_PC00267 7c54af06c8c728b8ed61f7dffb177cad 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 279 2.5E-16 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00267 7c54af06c8c728b8ed61f7dffb177cad 290 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 23 279 7.5E-99 T 12-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 AMJ96_CH00200 46ce9f5c633c90a9203d1eb2946dee2f 435 Gene3D G3DSA:3.40.1030.10 69 336 8.2E-104 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMJ96_CH00200 46ce9f5c633c90a9203d1eb2946dee2f 435 Gene3D G3DSA:3.90.1170.30 337 429 8.9E-27 T 12-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMJ96_CH00200 46ce9f5c633c90a9203d1eb2946dee2f 435 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 347 420 4.1E-19 T 12-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMJ96_CH00200 46ce9f5c633c90a9203d1eb2946dee2f 435 SUPERFAMILY SSF54680 334 434 5.23E-25 T 12-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMJ96_CH00200 46ce9f5c633c90a9203d1eb2946dee2f 435 TIGRFAM TIGR02643 T_phosphoryl: thymidine phosphorylase 1 434 2.8E-208 T 12-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 AMJ96_CH00200 46ce9f5c633c90a9203d1eb2946dee2f 435 Gene3D G3DSA:1.20.970.10 3 67 3.6E-23 T 12-10-2018 AMJ96_CH00200 46ce9f5c633c90a9203d1eb2946dee2f 435 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 110 125 - T 12-10-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMJ96_CH00200 46ce9f5c633c90a9203d1eb2946dee2f 435 SUPERFAMILY SSF52418 70 330 3.4E-88 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMJ96_CH00200 46ce9f5c633c90a9203d1eb2946dee2f 435 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 66 1.8E-20 T 12-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMJ96_CH00200 46ce9f5c633c90a9203d1eb2946dee2f 435 PIRSF PIRSF000478 1 434 9.1E-151 T 12-10-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMJ96_CH00200 46ce9f5c633c90a9203d1eb2946dee2f 435 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 4 420 3.2E-160 T 12-10-2018 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMJ96_CH00200 46ce9f5c633c90a9203d1eb2946dee2f 435 Pfam PF00591 Glycosyl transferase family, a/b domain 77 306 1.4E-41 T 12-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMJ96_CH00200 46ce9f5c633c90a9203d1eb2946dee2f 435 Hamap MF_01628 Thymidine phosphorylase [deoA]. 1 435 45.779 T 12-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 AMJ96_CH00200 46ce9f5c633c90a9203d1eb2946dee2f 435 SMART SM00941 347 421 2.2E-24 T 12-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMJ96_CH00200 46ce9f5c633c90a9203d1eb2946dee2f 435 SUPERFAMILY SSF47648 3 69 9.94E-20 T 12-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 AMJ96_PA00208 d8e359e29ff513167194eeb3680ab822 356 Pfam PF00296 Luciferase-like monooxygenase 7 331 3.7E-65 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMJ96_PA00208 d8e359e29ff513167194eeb3680ab822 356 Gene3D G3DSA:3.20.20.30 4 356 1.7E-86 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_PA00208 d8e359e29ff513167194eeb3680ab822 356 SUPERFAMILY SSF51679 7 356 3.14E-69 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_CH00648 cbbcce0306e9ccba87226ce8921348bd 243 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 78 2.2E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH00648 cbbcce0306e9ccba87226ce8921348bd 243 Pfam PF07729 FCD domain 103 224 1.6E-21 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH00648 cbbcce0306e9ccba87226ce8921348bd 243 SMART SM00895 103 225 1.2E-15 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH00648 cbbcce0306e9ccba87226ce8921348bd 243 SUPERFAMILY SSF46785 11 91 7.7E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00648 cbbcce0306e9ccba87226ce8921348bd 243 Gene3D G3DSA:1.10.10.10 15 82 5.4E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00648 cbbcce0306e9ccba87226ce8921348bd 243 SMART SM00345 19 78 4.6E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH00648 cbbcce0306e9ccba87226ce8921348bd 243 Gene3D G3DSA:1.20.120.530 98 237 1.8E-21 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH00648 cbbcce0306e9ccba87226ce8921348bd 243 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 52 68 4.3E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH00648 cbbcce0306e9ccba87226ce8921348bd 243 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 38 52 4.3E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH00648 cbbcce0306e9ccba87226ce8921348bd 243 SUPERFAMILY SSF48008 100 230 2.2E-22 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 Gene3D G3DSA:1.10.1030.10 458 605 3.0E-44 T 12-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 SUPERFAMILY SSF52440 618 740 6.62E-45 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 Gene3D G3DSA:3.30.470.20 730 1026 1.1E-101 T 12-10-2018 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 Gene3D G3DSA:3.30.470.20 188 456 3.4E-114 T 12-10-2018 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 Pfam PF02142 MGS-like domain 1047 1132 8.1E-20 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 483 602 2.1E-40 T 12-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 774 788 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 Gene3D G3DSA:3.40.50.20 615 727 3.0E-47 T 12-10-2018 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 203 387 9.1E-64 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 738 961 9.7E-25 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 Gene3D G3DSA:3.40.50.1380 1027 1162 1.1E-39 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 SMART SM01096 480 602 2.6E-70 T 12-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 924 931 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 660 670 1.1E-28 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 869 886 1.1E-28 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 924 953 1.1E-28 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 778 790 1.1E-28 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 631 645 1.1E-28 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 835 854 1.1E-28 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 1003 1021 1.1E-28 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 SMART SM00851 1046 1132 1.0E-32 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 SUPERFAMILY SSF52440 1 127 2.88E-49 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 350 357 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 SUPERFAMILY SSF52335 1026 1161 1.01E-40 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 Gene3D G3DSA:3.40.50.20 1 116 2.1E-49 T 12-10-2018 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1152 13.108 T 12-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 SUPERFAMILY SSF48108 449 604 4.71E-48 T 12-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 197 1143 0.0 T 12-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 SUPERFAMILY SSF56059 203 454 1.75E-100 T 12-10-2018 AMJ96_CH03130 e24f06c094889a29aebe656edc4df2a7 1162 SUPERFAMILY SSF56059 738 1024 1.45E-89 T 12-10-2018 AMJ96_PD00516 b764919598ee79943dc01fc0634639fe 261 PIRSF PIRSF000193 3 261 3.0E-49 T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AMJ96_PD00516 b764919598ee79943dc01fc0634639fe 261 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 6 97 2.6E-14 T 12-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal AMJ96_PD00516 b764919598ee79943dc01fc0634639fe 261 SUPERFAMILY SSF51735 4 149 2.79E-21 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00516 b764919598ee79943dc01fc0634639fe 261 Gene3D G3DSA:3.40.50.720 2 160 1.6E-26 T 12-10-2018 AMJ96_PB00064 b12c4f1c6744dbd4083894161c98cde2 260 SUPERFAMILY SSF51735 6 230 6.77E-47 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PB00064 b12c4f1c6744dbd4083894161c98cde2 260 Gene3D G3DSA:3.40.50.720 5 252 4.7E-45 T 12-10-2018 AMJ96_PB00064 b12c4f1c6744dbd4083894161c98cde2 260 Pfam PF00106 short chain dehydrogenase 8 193 5.7E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00064 b12c4f1c6744dbd4083894161c98cde2 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.4E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00064 b12c4f1c6744dbd4083894161c98cde2 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 6.4E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00064 b12c4f1c6744dbd4083894161c98cde2 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 6.4E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02595 1cb289208bdc62cf5fa7d930eb70f6b6 441 Gene3D G3DSA:3.40.190.10 146 425 2.1E-62 T 12-10-2018 AMJ96_CH02595 1cb289208bdc62cf5fa7d930eb70f6b6 441 Gene3D G3DSA:3.40.190.10 42 388 2.1E-62 T 12-10-2018 AMJ96_CH02595 1cb289208bdc62cf5fa7d930eb70f6b6 441 SUPERFAMILY SSF53850 27 438 2.12E-68 T 12-10-2018 AMJ96_CH02595 1cb289208bdc62cf5fa7d930eb70f6b6 441 Pfam PF13416 Bacterial extracellular solute-binding protein 46 376 8.3E-24 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH03529 1e2981e2b70661c97d45bc42738b961a 251 SUPERFAMILY SSF52540 10 249 1.11E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03529 1e2981e2b70661c97d45bc42738b961a 251 Pfam PF00005 ABC transporter 26 181 1.6E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03529 1e2981e2b70661c97d45bc42738b961a 251 SMART SM00382 35 249 2.8E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03529 1e2981e2b70661c97d45bc42738b961a 251 Gene3D G3DSA:3.40.50.300 6 251 3.6E-54 T 12-10-2018 AMJ96_CH03529 1e2981e2b70661c97d45bc42738b961a 251 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 229 250 6.5E-5 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMJ96_CH03529 1e2981e2b70661c97d45bc42738b961a 251 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 10 251 5.0E-116 T 12-10-2018 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD AMJ96_PD00425 00d5480aa20a9454a0c7b7c4440663f6 169 Pfam PF01230 HIT domain 37 121 2.6E-10 T 12-10-2018 IPR001310 Histidine triad (HIT) protein AMJ96_PD00425 00d5480aa20a9454a0c7b7c4440663f6 169 SUPERFAMILY SSF54197 20 160 5.72E-24 T 12-10-2018 IPR036265 HIT-like superfamily AMJ96_PD00425 00d5480aa20a9454a0c7b7c4440663f6 169 Gene3D G3DSA:3.30.428.10 13 166 1.7E-24 T 12-10-2018 IPR036265 HIT-like superfamily AMJ96_CH00744 1cc68e3efaa069c7ddd2359c5de55710 606 Gene3D G3DSA:3.50.30.80 422 571 1.5E-54 T 12-10-2018 AMJ96_CH00744 1cc68e3efaa069c7ddd2359c5de55710 606 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 508 519 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMJ96_CH00744 1cc68e3efaa069c7ddd2359c5de55710 606 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 156 166 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMJ96_CH00744 1cc68e3efaa069c7ddd2359c5de55710 606 SUPERFAMILY SSF52016 422 604 3.61E-61 T 12-10-2018 AMJ96_CH00744 1cc68e3efaa069c7ddd2359c5de55710 606 Hamap MF_02094 Phosphogluconate dehydratase [edd]. 3 605 59.228 T 12-10-2018 AMJ96_CH00744 1cc68e3efaa069c7ddd2359c5de55710 606 SUPERFAMILY SSF143975 4 421 2.48E-141 T 12-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMJ96_CH00744 1cc68e3efaa069c7ddd2359c5de55710 606 Pfam PF00920 Dehydratase family 68 601 2.1E-162 T 12-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMJ96_CH00744 1cc68e3efaa069c7ddd2359c5de55710 606 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 4 604 0.0 T 12-10-2018 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 AMJ96_CH02006 9452175278f586bd618999a73c08e3d3 193 SUPERFAMILY SSF55729 2 172 5.23E-17 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH02006 9452175278f586bd618999a73c08e3d3 193 Gene3D G3DSA:3.40.630.30 5 174 7.1E-21 T 12-10-2018 AMJ96_CH02006 9452175278f586bd618999a73c08e3d3 193 Pfam PF00583 Acetyltransferase (GNAT) family 44 165 3.2E-7 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH00625 a83b2cca13e76b172f310db0152d487e 393 Gene3D G3DSA:1.20.1530.10 11 393 4.6E-143 T 12-10-2018 IPR023171 Na/H antiporter domain superfamily AMJ96_CH00625 a83b2cca13e76b172f310db0152d487e 393 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 14 392 22.788 T 12-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 AMJ96_CH00625 a83b2cca13e76b172f310db0152d487e 393 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 17 386 6.4E-129 T 12-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 AMJ96_CH00625 a83b2cca13e76b172f310db0152d487e 393 Pfam PF06965 Na+/H+ antiporter 1 16 386 1.7E-140 T 12-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 AMJ96_CH02473 14dc6bb94dc126cd17fab1fbe67694a3 211 Gene3D G3DSA:1.20.1050.10 90 210 3.4E-32 T 12-10-2018 AMJ96_CH02473 14dc6bb94dc126cd17fab1fbe67694a3 211 Pfam PF13410 Glutathione S-transferase, C-terminal domain 136 190 1.2E-7 T 12-10-2018 AMJ96_CH02473 14dc6bb94dc126cd17fab1fbe67694a3 211 SUPERFAMILY SSF52833 1 90 2.52E-19 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH02473 14dc6bb94dc126cd17fab1fbe67694a3 211 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 3 208 4.8E-63 T 12-10-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-204174|Reactome: R-HSA-71182 AMJ96_CH02473 14dc6bb94dc126cd17fab1fbe67694a3 211 SUPERFAMILY SSF47616 83 208 7.1E-23 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMJ96_CH02473 14dc6bb94dc126cd17fab1fbe67694a3 211 Gene3D G3DSA:3.40.30.10 1 89 6.3E-23 T 12-10-2018 AMJ96_CH02473 14dc6bb94dc126cd17fab1fbe67694a3 211 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 83 1.4E-14 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMJ96_CH04057 05228e1022355784fc3b5d0d56ec50e5 140 Pfam PF06172 Cupin superfamily (DUF985) 6 131 2.0E-48 T 12-10-2018 IPR009327 Cupin domain of unknown function DUF985 AMJ96_CH04057 05228e1022355784fc3b5d0d56ec50e5 140 SUPERFAMILY SSF51182 2 137 2.15E-55 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH04057 05228e1022355784fc3b5d0d56ec50e5 140 Gene3D G3DSA:2.60.120.10 1 140 1.4E-61 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH03953 520cf8c15ce37b335c6b2a692c84d078 382 SMART SM00922 125 230 4.1E-21 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMJ96_CH03953 520cf8c15ce37b335c6b2a692c84d078 382 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 180 211 - T 12-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AMJ96_CH03953 520cf8c15ce37b335c6b2a692c84d078 382 Pfam PF13378 Enolase C-terminal domain-like 128 355 1.9E-64 T 12-10-2018 IPR029065 Enolase C-terminal domain-like AMJ96_CH03953 520cf8c15ce37b335c6b2a692c84d078 382 SUPERFAMILY SSF51604 95 357 5.5E-80 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_CH03953 520cf8c15ce37b335c6b2a692c84d078 382 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 82 107 - T 12-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AMJ96_CH03953 520cf8c15ce37b335c6b2a692c84d078 382 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 15 107 8.3E-27 T 12-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMJ96_CH03953 520cf8c15ce37b335c6b2a692c84d078 382 Gene3D G3DSA:3.20.20.120 102 344 2.9E-152 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_CH03953 520cf8c15ce37b335c6b2a692c84d078 382 SUPERFAMILY SSF54826 1 112 6.59E-31 T 12-10-2018 AMJ96_CH03953 520cf8c15ce37b335c6b2a692c84d078 382 Gene3D G3DSA:3.30.390.10 11 374 2.9E-152 T 12-10-2018 IPR029017 Enolase-like, N-terminal AMJ96_CH03038 94ba468485af8c0b10a5122188fdd4f2 406 Pfam PF13406 Transglycosylase SLT domain 44 331 1.0E-82 T 12-10-2018 IPR031304 Transglycosylase SLT domain 2 AMJ96_CH03038 94ba468485af8c0b10a5122188fdd4f2 406 SUPERFAMILY SSF53955 30 336 2.44E-84 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily AMJ96_CH03038 94ba468485af8c0b10a5122188fdd4f2 406 Pfam PF01471 Putative peptidoglycan binding domain 352 406 2.9E-11 T 12-10-2018 IPR002477 Peptidoglycan binding-like AMJ96_CH03038 94ba468485af8c0b10a5122188fdd4f2 406 SUPERFAMILY SSF47090 339 406 1.44E-15 T 12-10-2018 IPR036365 PGBD-like superfamily AMJ96_CH03038 94ba468485af8c0b10a5122188fdd4f2 406 Gene3D G3DSA:1.10.101.10 336 406 1.2E-10 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMJ96_CH03038 94ba468485af8c0b10a5122188fdd4f2 406 Gene3D G3DSA:1.10.530.10 84 331 2.2E-59 T 12-10-2018 AMJ96_CH03038 94ba468485af8c0b10a5122188fdd4f2 406 Gene3D G3DSA:1.10.8.350 57 217 2.2E-59 T 12-10-2018 AMJ96_CH03038 94ba468485af8c0b10a5122188fdd4f2 406 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 42 335 9.5E-99 T 12-10-2018 IPR011970 Lytic murein transglycosylase AMJ96_PC00280 f1fbc84b74e085013f1bba6276b3b715 188 Pfam PF09335 SNARE associated Golgi protein 23 144 7.8E-17 T 12-10-2018 IPR032816 SNARE associated Golgi protein AMJ96_PC00129 0092c813450666b656b261695a462cc2 238 Pfam PF01177 Asp/Glu/Hydantoin racemase 3 207 6.9E-12 T 12-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMJ96_PC00129 0092c813450666b656b261695a462cc2 238 SUPERFAMILY SSF53681 152 207 4.58E-5 T 12-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMJ96_PC00129 0092c813450666b656b261695a462cc2 238 Gene3D G3DSA:3.40.50.12500 1 235 2.6E-73 T 12-10-2018 AMJ96_CH00737 4082ae60c9c54c2a222b58905af78f01 342 SMART SM00354 1 70 6.2E-17 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH00737 4082ae60c9c54c2a222b58905af78f01 342 Gene3D G3DSA:3.40.50.2300 163 295 5.7E-64 T 12-10-2018 AMJ96_CH00737 4082ae60c9c54c2a222b58905af78f01 342 Gene3D G3DSA:1.10.260.40 1 57 6.1E-20 T 12-10-2018 AMJ96_CH00737 4082ae60c9c54c2a222b58905af78f01 342 SUPERFAMILY SSF47413 2 57 1.25E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH00737 4082ae60c9c54c2a222b58905af78f01 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 47 2.6E-12 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH00737 4082ae60c9c54c2a222b58905af78f01 342 SUPERFAMILY SSF53822 61 339 6.28E-50 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH00737 4082ae60c9c54c2a222b58905af78f01 342 Pfam PF13377 Periplasmic binding protein-like domain 172 335 5.3E-24 T 12-10-2018 AMJ96_CH00737 4082ae60c9c54c2a222b58905af78f01 342 Gene3D G3DSA:3.40.50.2300 77 314 5.7E-64 T 12-10-2018 AMJ96_PA00234 4a3ce59cb34fc8b3a9d179d29f576184 318 Gene3D G3DSA:3.20.20.140 8 310 1.3E-73 T 12-10-2018 AMJ96_PA00234 4a3ce59cb34fc8b3a9d179d29f576184 318 SUPERFAMILY SSF51556 9 304 1.36E-47 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_PA00234 4a3ce59cb34fc8b3a9d179d29f576184 318 Pfam PF04909 Amidohydrolase 10 304 9.0E-32 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMJ96_CH00162 7c46d83fc68e103d73cf8e9a700bda3f 379 SUPERFAMILY SSF51338 3 378 6.48E-14 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH00162 7c46d83fc68e103d73cf8e9a700bda3f 379 Pfam PF07969 Amidohydrolase family 280 357 1.6E-7 T 12-10-2018 IPR013108 Amidohydrolase 3 AMJ96_CH00162 7c46d83fc68e103d73cf8e9a700bda3f 379 TIGRFAM TIGR02318 phosphono_phnM: phosphonate metabolism protein PhnM 7 378 1.5E-158 T 12-10-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_CH00162 7c46d83fc68e103d73cf8e9a700bda3f 379 SUPERFAMILY SSF51556 52 346 5.29E-16 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_CH00162 7c46d83fc68e103d73cf8e9a700bda3f 379 Gene3D G3DSA:2.30.40.10 5 51 2.1E-11 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH00162 7c46d83fc68e103d73cf8e9a700bda3f 379 Gene3D G3DSA:3.20.20.140 326 341 1.0E-6 T 12-10-2018 AMJ96_CH00162 7c46d83fc68e103d73cf8e9a700bda3f 379 PIRSF PIRSF038971 3 379 3.0E-140 T 12-10-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_CH00162 7c46d83fc68e103d73cf8e9a700bda3f 379 Gene3D G3DSA:3.20.20.140 52 105 2.1E-11 T 12-10-2018 AMJ96_CH00162 7c46d83fc68e103d73cf8e9a700bda3f 379 Gene3D G3DSA:2.30.40.10 342 379 1.0E-6 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_PD00566 7d636793cb07cc1b0e13d67f740687b9 483 SUPERFAMILY SSF52540 8 233 4.28E-50 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00566 7d636793cb07cc1b0e13d67f740687b9 483 ProSitePatterns PS00211 ABC transporters family signature. 383 397 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00566 7d636793cb07cc1b0e13d67f740687b9 483 SMART SM00382 33 225 3.3E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00566 7d636793cb07cc1b0e13d67f740687b9 483 SMART SM00382 280 457 0.015 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00566 7d636793cb07cc1b0e13d67f740687b9 483 Pfam PF00005 ABC transporter 275 410 1.4E-7 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00566 7d636793cb07cc1b0e13d67f740687b9 483 SUPERFAMILY SSF52540 275 462 1.08E-32 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00566 7d636793cb07cc1b0e13d67f740687b9 483 Pfam PF00005 ABC transporter 24 177 6.1E-24 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00566 7d636793cb07cc1b0e13d67f740687b9 483 Gene3D G3DSA:3.40.50.300 6 269 6.7E-53 T 12-10-2018 AMJ96_CH00642 39299b9d0459c0f8769dfdfa32b36ffd 317 Gene3D G3DSA:3.40.50.300 3 316 6.4E-104 T 12-10-2018 AMJ96_CH00642 39299b9d0459c0f8769dfdfa32b36ffd 317 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00642 39299b9d0459c0f8769dfdfa32b36ffd 317 Pfam PF00005 ABC transporter 25 176 1.6E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00642 39299b9d0459c0f8769dfdfa32b36ffd 317 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 228 293 4.8E-18 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_CH00642 39299b9d0459c0f8769dfdfa32b36ffd 317 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 226 312 1.3E-24 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_CH00642 39299b9d0459c0f8769dfdfa32b36ffd 317 SMART SM00382 34 226 4.8E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00642 39299b9d0459c0f8769dfdfa32b36ffd 317 SUPERFAMILY SSF52540 5 248 4.78E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00092 bf0fb8e9118dfd4791244931ce37eb58 241 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 18 124 2.2E-16 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_PC00092 bf0fb8e9118dfd4791244931ce37eb58 241 Gene3D G3DSA:1.10.3720.10 12 233 7.0E-39 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00092 bf0fb8e9118dfd4791244931ce37eb58 241 SUPERFAMILY SSF161098 18 215 3.01E-33 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00092 bf0fb8e9118dfd4791244931ce37eb58 241 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 228 5.0E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03339 bb3f4c2269000ecc9b573b46eb00109f 183 SUPERFAMILY SSF55729 8 179 2.85E-45 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH03339 bb3f4c2269000ecc9b573b46eb00109f 183 Pfam PF13302 Acetyltransferase (GNAT) domain 15 155 1.3E-28 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH03339 bb3f4c2269000ecc9b573b46eb00109f 183 Gene3D G3DSA:3.40.630.30 2 183 1.7E-46 T 12-10-2018 AMJ96_PD00077 d2c0b0340cc9a11186d41ec41f9e3f67 137 Pfam PF07012 Curlin associated repeat 81 114 1.3E-4 T 12-10-2018 IPR009742 Curlin associated GO:0007155|GO:0009289 AMJ96_PD00077 d2c0b0340cc9a11186d41ec41f9e3f67 137 Pfam PF07012 Curlin associated repeat 63 85 1.5E-5 T 12-10-2018 IPR009742 Curlin associated GO:0007155|GO:0009289 AMJ96_PB00011 0c2d5228871fc8b288de5ab5c832f60b 1265 SUPERFAMILY SSF48452 350 750 5.35E-5 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03946 071e28d988613837f2ac892857b958ab 143 Gene3D G3DSA:3.30.300.20 1 142 3.1E-43 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta AMJ96_CH03946 071e28d988613837f2ac892857b958ab 143 Pfam PF02566 OsmC-like protein 45 138 1.6E-18 T 12-10-2018 IPR003718 OsmC/Ohr family AMJ96_CH03946 071e28d988613837f2ac892857b958ab 143 TIGRFAM TIGR03562 osmo_induc_OsmC: peroxiredoxin, OsmC subfamily 5 139 1.3E-61 T 12-10-2018 IPR019904 Peroxiredoxin OsmC GO:0004601|GO:0006979 KEGG: 00480+1.11.1.15 AMJ96_CH03946 071e28d988613837f2ac892857b958ab 143 SUPERFAMILY SSF82784 1 138 5.23E-37 T 12-10-2018 IPR036102 OsmC/Ohr superfamily AMJ96_CH03857 cc711964c84599e95c0b001c2538adb1 550 Pfam PF07536 HWE histidine kinase 357 437 1.3E-18 T 12-10-2018 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 AMJ96_CH03857 cc711964c84599e95c0b001c2538adb1 550 Gene3D G3DSA:3.30.450.20 38 175 1.9E-8 T 12-10-2018 AMJ96_CH03857 cc711964c84599e95c0b001c2538adb1 550 Gene3D G3DSA:3.30.565.10 413 546 8.8E-9 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH03857 cc711964c84599e95c0b001c2538adb1 550 SMART SM00911 357 438 1.2E-25 T 12-10-2018 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 AMJ96_CH00999 23f79413425a1598ca329893fedb0da7 431 Gene3D G3DSA:3.30.830.10 4 218 1.6E-72 T 12-10-2018 AMJ96_CH00999 23f79413425a1598ca329893fedb0da7 431 Gene3D G3DSA:3.30.830.10 221 423 1.2E-52 T 12-10-2018 AMJ96_CH00999 23f79413425a1598ca329893fedb0da7 431 Pfam PF05193 Peptidase M16 inactive domain 166 339 3.2E-38 T 12-10-2018 IPR007863 Peptidase M16, C-terminal AMJ96_CH00999 23f79413425a1598ca329893fedb0da7 431 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 34 57 - T 12-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 AMJ96_CH00999 23f79413425a1598ca329893fedb0da7 431 SUPERFAMILY SSF63411 224 411 1.0E-44 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMJ96_CH00999 23f79413425a1598ca329893fedb0da7 431 Pfam PF00675 Insulinase (Peptidase family M16) 14 160 1.1E-48 T 12-10-2018 IPR011765 Peptidase M16, N-terminal AMJ96_CH00999 23f79413425a1598ca329893fedb0da7 431 SUPERFAMILY SSF63411 3 217 2.79E-61 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AMJ96_CH02384 5f4ca7c0dba842ebcf342ab0383eb86e 283 SMART SM00342 28 111 8.4E-21 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH02384 5f4ca7c0dba842ebcf342ab0383eb86e 283 Gene3D G3DSA:3.20.80.10 131 283 2.9E-45 T 12-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily AMJ96_CH02384 5f4ca7c0dba842ebcf342ab0383eb86e 283 SMART SM00871 131 283 9.5E-43 T 12-10-2018 IPR010499 Bacterial transcription activator, effector binding AMJ96_CH02384 5f4ca7c0dba842ebcf342ab0383eb86e 283 Pfam PF12833 Helix-turn-helix domain 34 112 6.3E-17 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH02384 5f4ca7c0dba842ebcf342ab0383eb86e 283 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 80 95 6.3E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_CH02384 5f4ca7c0dba842ebcf342ab0383eb86e 283 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 95 111 6.3E-6 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_CH02384 5f4ca7c0dba842ebcf342ab0383eb86e 283 Pfam PF06445 GyrI-like small molecule binding domain 132 282 8.1E-38 T 12-10-2018 IPR029442 GyrI-like small molecule binding domain AMJ96_CH02384 5f4ca7c0dba842ebcf342ab0383eb86e 283 SUPERFAMILY SSF55136 132 282 5.76E-38 T 12-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily AMJ96_CH02384 5f4ca7c0dba842ebcf342ab0383eb86e 283 SUPERFAMILY SSF46689 64 114 2.91E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02384 5f4ca7c0dba842ebcf342ab0383eb86e 283 Gene3D G3DSA:1.10.10.60 8 118 5.1E-26 T 12-10-2018 AMJ96_CH02384 5f4ca7c0dba842ebcf342ab0383eb86e 283 SUPERFAMILY SSF46689 12 59 5.64E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03969 20377d2af1d13c38cdcd8a112112782b 242 TIGRFAM TIGR03365 Bsubt_queE: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 5 242 9.2E-117 T 12-10-2018 IPR017742 7-carboxy-7-deazaguanine synthase KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 AMJ96_CH03969 20377d2af1d13c38cdcd8a112112782b 242 Gene3D G3DSA:3.20.20.70 5 170 6.9E-29 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH03969 20377d2af1d13c38cdcd8a112112782b 242 Pfam PF13394 4Fe-4S single cluster domain 28 113 1.9E-6 T 12-10-2018 AMJ96_CH03969 20377d2af1d13c38cdcd8a112112782b 242 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 6 239 37.144 T 12-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 AMJ96_CH03969 20377d2af1d13c38cdcd8a112112782b 242 SUPERFAMILY SSF102114 29 119 2.62E-8 T 12-10-2018 AMJ96_CH03969 20377d2af1d13c38cdcd8a112112782b 242 Pfam PF04055 Radical SAM superfamily 30 118 3.6E-8 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMJ96_CH03969 20377d2af1d13c38cdcd8a112112782b 242 PIRSF PIRSF000370 4 242 1.0E-59 T 12-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 AMJ96_CH02490 19310f25dfeaf038b090254f64c4ff79 151 Pfam PF08818 Domain of unknown function (DU1801) 39 132 1.2E-19 T 12-10-2018 IPR014922 Domain of unknown function DUF1801 AMJ96_CH02490 19310f25dfeaf038b090254f64c4ff79 151 SUPERFAMILY SSF159888 27 137 1.44E-18 T 12-10-2018 AMJ96_CH01396 f3e0595213d5bc9dc93758abb460e8bf 367 Gene3D G3DSA:3.40.50.2000 172 343 1.3E-28 T 12-10-2018 AMJ96_CH01396 f3e0595213d5bc9dc93758abb460e8bf 367 Pfam PF13579 Glycosyl transferase 4-like domain 12 162 1.7E-10 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMJ96_CH01396 f3e0595213d5bc9dc93758abb460e8bf 367 Pfam PF00534 Glycosyl transferases group 1 185 338 1.2E-16 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 AMJ96_CH01396 f3e0595213d5bc9dc93758abb460e8bf 367 SUPERFAMILY SSF53756 11 362 3.34E-52 T 12-10-2018 AMJ96_CH01396 f3e0595213d5bc9dc93758abb460e8bf 367 Gene3D G3DSA:3.40.50.2000 10 171 1.4E-10 T 12-10-2018 AMJ96_PC00420 65d8e841d861b840afce3d8dab686b5e 343 Gene3D G3DSA:3.20.20.100 1 337 1.6E-118 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_PC00420 65d8e841d861b840afce3d8dab686b5e 343 SUPERFAMILY SSF51430 1 322 2.23E-100 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_PC00420 65d8e841d861b840afce3d8dab686b5e 343 Pfam PF00248 Aldo/keto reductase family 17 317 9.9E-77 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_CH02422 a37da7464dd4df9ec80582ddd8fa292e 412 SUPERFAMILY SSF48452 303 394 2.63E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02422 a37da7464dd4df9ec80582ddd8fa292e 412 Pfam PF04542 Sigma-70 region 2 21 82 2.9E-9 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH02422 a37da7464dd4df9ec80582ddd8fa292e 412 Gene3D G3DSA:1.10.1740.10 4 79 1.8E-5 T 12-10-2018 AMJ96_CH02422 a37da7464dd4df9ec80582ddd8fa292e 412 SUPERFAMILY SSF88946 14 97 7.06E-11 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH02422 a37da7464dd4df9ec80582ddd8fa292e 412 Gene3D G3DSA:1.25.40.10 291 409 3.2E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02422 a37da7464dd4df9ec80582ddd8fa292e 412 SUPERFAMILY SSF88659 107 169 3.66E-6 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_CH00267 823e0e92d4f9eb529778499926b6840d 327 PIRSF PIRSF035918 4 327 2.4E-182 T 12-10-2018 IPR017040 Uncharacterised conserved protein UCP035918 , rubrerythrin/DUF125-related AMJ96_CH00267 823e0e92d4f9eb529778499926b6840d 327 Gene3D G3DSA:1.20.1260.10 11 174 1.3E-18 T 12-10-2018 IPR012347 Ferritin-like AMJ96_CH00267 823e0e92d4f9eb529778499926b6840d 327 SUPERFAMILY SSF47240 9 160 2.48E-32 T 12-10-2018 IPR009078 Ferritin-like superfamily AMJ96_CH00267 823e0e92d4f9eb529778499926b6840d 327 Pfam PF02915 Rubrerythrin 20 156 6.6E-35 T 12-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 AMJ96_CH00987 e9dcafc2c3735d80d71be45fa05cea24 63 SUPERFAMILY SSF69047 5 61 3.27E-12 T 12-10-2018 IPR036629 YjbJ superfamily AMJ96_CH00987 e9dcafc2c3735d80d71be45fa05cea24 63 Pfam PF05532 CsbD-like 6 57 9.2E-17 T 12-10-2018 IPR008462 CsbD-like domain AMJ96_CH00987 e9dcafc2c3735d80d71be45fa05cea24 63 Gene3D G3DSA:1.10.1470.10 4 63 9.0E-9 T 12-10-2018 IPR036629 YjbJ superfamily AMJ96_CH00873 df2aafdbbdfcf7008e27566cac302bd2 201 Gene3D G3DSA:2.30.30.240 76 171 2.6E-26 T 12-10-2018 AMJ96_CH00873 df2aafdbbdfcf7008e27566cac302bd2 201 Pfam PF05239 PRC-barrel domain 86 147 1.6E-15 T 12-10-2018 IPR027275 PRC-barrel domain AMJ96_CH00873 df2aafdbbdfcf7008e27566cac302bd2 201 SUPERFAMILY SSF50346 88 147 3.73E-13 T 12-10-2018 IPR011033 PRC-barrel-like superfamily AMJ96_PD00371 be8b91a90d23c9c0e9a7c5ebdad6be86 541 Gene3D G3DSA:3.40.50.1220 191 346 8.2E-37 T 12-10-2018 AMJ96_PD00371 be8b91a90d23c9c0e9a7c5ebdad6be86 541 Gene3D G3DSA:3.40.50.970 1 190 2.3E-50 T 12-10-2018 AMJ96_PD00371 be8b91a90d23c9c0e9a7c5ebdad6be86 541 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 321 4.6E-27 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMJ96_PD00371 be8b91a90d23c9c0e9a7c5ebdad6be86 541 SUPERFAMILY SSF52467 187 349 8.11E-38 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMJ96_PD00371 be8b91a90d23c9c0e9a7c5ebdad6be86 541 Gene3D G3DSA:3.40.50.970 349 531 2.2E-49 T 12-10-2018 AMJ96_PD00371 be8b91a90d23c9c0e9a7c5ebdad6be86 541 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 177 1.7E-45 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMJ96_PD00371 be8b91a90d23c9c0e9a7c5ebdad6be86 541 SUPERFAMILY SSF52518 356 526 3.34E-50 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_PD00371 be8b91a90d23c9c0e9a7c5ebdad6be86 541 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 411 430 - T 12-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AMJ96_PD00371 be8b91a90d23c9c0e9a7c5ebdad6be86 541 SUPERFAMILY SSF52518 3 181 7.85E-45 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_PD00371 be8b91a90d23c9c0e9a7c5ebdad6be86 541 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 377 521 1.5E-35 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMJ96_CH03992 e4a586dc561339a2b2649285f245e7fa 640 Gene3D G3DSA:3.10.450.350 380 619 4.2E-67 T 12-10-2018 AMJ96_CH03992 e4a586dc561339a2b2649285f245e7fa 640 SUPERFAMILY SSF51261 380 601 3.24E-58 T 12-10-2018 IPR011055 Duplicated hybrid motif AMJ96_CH03992 e4a586dc561339a2b2649285f245e7fa 640 Pfam PF01551 Peptidase family M23 502 599 5.1E-29 T 12-10-2018 IPR016047 Peptidase M23 AMJ96_CH03992 e4a586dc561339a2b2649285f245e7fa 640 Gene3D G3DSA:2.70.70.10 474 605 4.2E-67 T 12-10-2018 IPR011055 Duplicated hybrid motif AMJ96_CH02631 477eecdba8fba6a76e03a133484c6e3d 474 Pfam PF00723 Glycosyl hydrolases family 15 225 457 1.3E-50 T 12-10-2018 IPR011613 GH15-like domain Reactome: R-HSA-70221 AMJ96_CH02631 477eecdba8fba6a76e03a133484c6e3d 474 Gene3D G3DSA:1.50.10.10 223 472 2.8E-55 T 12-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 AMJ96_CH02631 477eecdba8fba6a76e03a133484c6e3d 474 SUPERFAMILY SSF48208 192 459 5.29E-66 T 12-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 AMJ96_PC00050 50c63e502e95064526f12ac23b0c1a2a 301 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 2.0E-12 T 12-10-2018 AMJ96_PC00050 50c63e502e95064526f12ac23b0c1a2a 301 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 2.0E-12 T 12-10-2018 AMJ96_PC00050 50c63e502e95064526f12ac23b0c1a2a 301 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 249 271 2.0E-12 T 12-10-2018 AMJ96_PC00050 50c63e502e95064526f12ac23b0c1a2a 301 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 181 280 2.3E-6 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_PC00050 50c63e502e95064526f12ac23b0c1a2a 301 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 132 2.4E-12 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_PC00050 50c63e502e95064526f12ac23b0c1a2a 301 SUPERFAMILY SSF51905 1 293 4.32E-33 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00050 50c63e502e95064526f12ac23b0c1a2a 301 Gene3D G3DSA:3.50.50.60 115 225 1.5E-92 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00050 50c63e502e95064526f12ac23b0c1a2a 301 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 4 26 4.0E-14 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_PC00050 50c63e502e95064526f12ac23b0c1a2a 301 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 124 136 4.0E-14 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_PC00050 50c63e502e95064526f12ac23b0c1a2a 301 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 259 277 4.0E-14 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_PC00050 50c63e502e95064526f12ac23b0c1a2a 301 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 102 110 4.0E-14 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_PC00050 50c63e502e95064526f12ac23b0c1a2a 301 Gene3D G3DSA:3.50.50.60 3 290 1.5E-92 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03452 2f9169358f9b242951d4437a2bb233d0 337 SUPERFAMILY SSF111369 183 329 2.09E-10 T 12-10-2018 AMJ96_CH03452 2f9169358f9b242951d4437a2bb233d0 337 Gene3D G3DSA:2.40.30.170 246 326 2.5E-24 T 12-10-2018 AMJ96_CH03452 2f9169358f9b242951d4437a2bb233d0 337 SUPERFAMILY SSF111369 46 106 2.35E-7 T 12-10-2018 AMJ96_CH03452 2f9169358f9b242951d4437a2bb233d0 337 Gene3D G3DSA:1.10.287.470 81 105 1.4E-13 T 12-10-2018 AMJ96_CH03452 2f9169358f9b242951d4437a2bb233d0 337 Gene3D G3DSA:1.10.287.470 112 175 3.6E-7 T 12-10-2018 AMJ96_CH03452 2f9169358f9b242951d4437a2bb233d0 337 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 47 291 1.9E-18 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMJ96_CH03452 2f9169358f9b242951d4437a2bb233d0 337 Gene3D G3DSA:2.40.50.100 47 80 1.4E-13 T 12-10-2018 AMJ96_CH03452 2f9169358f9b242951d4437a2bb233d0 337 Gene3D G3DSA:2.40.50.100 211 245 2.5E-24 T 12-10-2018 AMJ96_CH03452 2f9169358f9b242951d4437a2bb233d0 337 Gene3D G3DSA:1.10.287.470 182 210 2.5E-24 T 12-10-2018 AMJ96_PD00436 020806aa2e3ab8acd4cb61f3abdc8ef1 301 Gene3D G3DSA:3.40.190.290 89 293 1.5E-24 T 12-10-2018 AMJ96_PD00436 020806aa2e3ab8acd4cb61f3abdc8ef1 301 Gene3D G3DSA:1.10.10.10 1 88 2.3E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00436 020806aa2e3ab8acd4cb61f3abdc8ef1 301 SUPERFAMILY SSF46785 2 108 4.41E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00436 020806aa2e3ab8acd4cb61f3abdc8ef1 301 SUPERFAMILY SSF53850 87 292 4.51E-25 T 12-10-2018 AMJ96_PD00436 020806aa2e3ab8acd4cb61f3abdc8ef1 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 1.0E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00436 020806aa2e3ab8acd4cb61f3abdc8ef1 301 Pfam PF03466 LysR substrate binding domain 87 289 1.6E-27 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH03912 e3157e0742a7651cca29278d55907adb 302 Gene3D G3DSA:3.40.190.10 165 270 6.8E-44 T 12-10-2018 AMJ96_CH03912 e3157e0742a7651cca29278d55907adb 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.5E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03912 e3157e0742a7651cca29278d55907adb 302 SUPERFAMILY SSF46785 2 113 1.4E-25 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03912 e3157e0742a7651cca29278d55907adb 302 SUPERFAMILY SSF53850 91 296 7.0E-35 T 12-10-2018 AMJ96_CH03912 e3157e0742a7651cca29278d55907adb 302 Pfam PF03466 LysR substrate binding domain 90 292 8.3E-39 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH03912 e3157e0742a7651cca29278d55907adb 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.1E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03912 e3157e0742a7651cca29278d55907adb 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.1E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03912 e3157e0742a7651cca29278d55907adb 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.1E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03912 e3157e0742a7651cca29278d55907adb 302 Gene3D G3DSA:1.10.10.10 1 84 4.5E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03912 e3157e0742a7651cca29278d55907adb 302 Gene3D G3DSA:3.40.190.10 93 290 6.8E-44 T 12-10-2018 AMJ96_CH02240 e1fe7359bd1e995989442e503b7f0f29 172 Pfam PF04773 FecR protein 35 126 3.6E-8 T 12-10-2018 IPR006860 FecR protein AMJ96_CH04281 343f3851db6a1d23f83db3d02970b2d2 216 SUPERFAMILY SSF63999 5 125 7.19E-20 T 12-10-2018 IPR036759 Thiamin pyrophosphokinase, catalytic domain superfamily GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 AMJ96_CH04281 343f3851db6a1d23f83db3d02970b2d2 216 Pfam PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain 158 202 6.4E-6 T 12-10-2018 IPR007373 Thiamin pyrophosphokinase, thiamin-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 AMJ96_CH04281 343f3851db6a1d23f83db3d02970b2d2 216 Gene3D G3DSA:3.40.50.10240 5 212 3.0E-41 T 12-10-2018 IPR036759 Thiamin pyrophosphokinase, catalytic domain superfamily GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 AMJ96_CH04281 343f3851db6a1d23f83db3d02970b2d2 216 SMART SM00983 142 205 1.6E-17 T 12-10-2018 IPR007373 Thiamin pyrophosphokinase, thiamin-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 AMJ96_CH04281 343f3851db6a1d23f83db3d02970b2d2 216 Pfam PF04263 Thiamin pyrophosphokinase, catalytic domain 29 127 3.5E-10 T 12-10-2018 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 AMJ96_CH04281 343f3851db6a1d23f83db3d02970b2d2 216 TIGRFAM TIGR01378 thi_PPkinase: thiamine pyrophosphokinase 7 206 7.4E-42 T 12-10-2018 IPR006282 Thiamin pyrophosphokinase GO:0004788|GO:0006772 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 AMJ96_PB00255 f308657a54ca7d3dc45715458347c4ac 429 Pfam PF09850 Type VI secretion system protein DotU 48 248 5.5E-63 T 12-10-2018 IPR017732 Type IV / VI secretion system, DotU AMJ96_PB00255 f308657a54ca7d3dc45715458347c4ac 429 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 47 256 2.9E-65 T 12-10-2018 IPR017732 Type IV / VI secretion system, DotU AMJ96_PB00255 f308657a54ca7d3dc45715458347c4ac 429 Pfam PF00691 OmpA family 322 419 6.8E-10 T 12-10-2018 IPR006665 OmpA-like domain AMJ96_PB00255 f308657a54ca7d3dc45715458347c4ac 429 Gene3D G3DSA:1.25.40.590 44 202 3.2E-49 T 12-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily AMJ96_PB00255 f308657a54ca7d3dc45715458347c4ac 429 Gene3D G3DSA:3.30.1330.60 278 429 8.2E-37 T 12-10-2018 IPR036737 OmpA-like domain superfamily AMJ96_PB00255 f308657a54ca7d3dc45715458347c4ac 429 TIGRFAM TIGR03350 type_VI_ompA: type VI secretion system peptidoglycan-associated domain 289 425 8.0E-42 T 12-10-2018 IPR017733 Type VI secretion system peptidoglycan-associated domain AMJ96_PB00255 f308657a54ca7d3dc45715458347c4ac 429 SUPERFAMILY SSF103088 292 425 5.1E-22 T 12-10-2018 IPR036737 OmpA-like domain superfamily AMJ96_CH03049 877b50b64d538396f626da07097b7081 552 SUPERFAMILY SSF52467 154 352 4.21E-37 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily AMJ96_CH03049 877b50b64d538396f626da07097b7081 552 Gene3D G3DSA:3.40.50.970 360 552 7.4E-59 T 12-10-2018 AMJ96_CH03049 877b50b64d538396f626da07097b7081 552 Gene3D G3DSA:3.40.50.970 1 177 1.4E-59 T 12-10-2018 AMJ96_CH03049 877b50b64d538396f626da07097b7081 552 Gene3D G3DSA:3.40.50.1220 184 356 5.4E-35 T 12-10-2018 AMJ96_CH03049 877b50b64d538396f626da07097b7081 552 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 384 530 8.6E-46 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AMJ96_CH03049 877b50b64d538396f626da07097b7081 552 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 171 3.7E-51 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AMJ96_CH03049 877b50b64d538396f626da07097b7081 552 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 188 326 1.1E-25 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AMJ96_CH03049 877b50b64d538396f626da07097b7081 552 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 420 439 - T 12-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AMJ96_CH03049 877b50b64d538396f626da07097b7081 552 SUPERFAMILY SSF52518 362 540 3.93E-60 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_CH03049 877b50b64d538396f626da07097b7081 552 SUPERFAMILY SSF52518 1 173 2.27E-49 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_CH00821 5e2f918fa6ed0415c54df26ddf026434 213 Gene3D G3DSA:1.10.357.10 22 208 5.5E-32 T 12-10-2018 AMJ96_CH00821 5e2f918fa6ed0415c54df26ddf026434 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 2.6E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00821 5e2f918fa6ed0415c54df26ddf026434 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 2.6E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00821 5e2f918fa6ed0415c54df26ddf026434 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 73 8.2E-12 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00821 5e2f918fa6ed0415c54df26ddf026434 213 SUPERFAMILY SSF46689 12 96 1.75E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH00494 fde7a1fb42107c71a80b8d37cfa8d44b 308 SUPERFAMILY SSF53613 2 302 1.01E-63 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_CH00494 fde7a1fb42107c71a80b8d37cfa8d44b 308 Pfam PF00294 pfkB family carbohydrate kinase 2 301 1.4E-45 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB AMJ96_CH00494 fde7a1fb42107c71a80b8d37cfa8d44b 308 Gene3D G3DSA:3.40.1190.20 1 306 9.8E-88 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_CH00494 fde7a1fb42107c71a80b8d37cfa8d44b 308 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 243 256 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMJ96_PD00149 399ede9d8ae271dbe363764c2b98f46b 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 120 313 6.4E-34 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00149 399ede9d8ae271dbe363764c2b98f46b 320 Gene3D G3DSA:1.10.3720.10 90 307 1.4E-19 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00149 399ede9d8ae271dbe363764c2b98f46b 320 SUPERFAMILY SSF161098 99 302 4.25E-17 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01299 3b63d37f901221c7756fefb4066430e6 482 SUPERFAMILY SSF58104 30 306 3.14E-46 T 12-10-2018 AMJ96_CH01299 3b63d37f901221c7756fefb4066430e6 482 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 127 265 1.7E-26 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH01299 3b63d37f901221c7756fefb4066430e6 482 Gene3D G3DSA:1.10.287.950 17 335 6.9E-44 T 12-10-2018 AMJ96_CH01299 3b63d37f901221c7756fefb4066430e6 482 SMART SM00283 25 290 1.3E-16 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH03530 a3fc02f947aa2b3baa602a51b96c0b70 387 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 40 354 1.7E-134 T 12-10-2018 IPR017778 ABC transporter, urea, permease protein, UrtC AMJ96_CH03530 a3fc02f947aa2b3baa602a51b96c0b70 387 Pfam PF02653 Branched-chain amino acid transport system / permease component 47 344 1.5E-39 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH02714 81afec3e6e1982575190448c79d3a7b9 256 Gene3D G3DSA:3.30.70.1230 64 255 1.1E-45 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02714 81afec3e6e1982575190448c79d3a7b9 256 SMART SM00044 45 246 7.9E-6 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH02714 81afec3e6e1982575190448c79d3a7b9 256 SUPERFAMILY SSF55073 69 251 4.24E-46 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02714 81afec3e6e1982575190448c79d3a7b9 256 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 72 226 2.5E-23 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH01745 6dac25d3ffe0b57a632c60e828d95acf 218 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 10 204 20.511 T 12-10-2018 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 AMJ96_CH01745 6dac25d3ffe0b57a632c60e828d95acf 218 Pfam PF01794 Ferric reductase like transmembrane component 53 162 3.7E-16 T 12-10-2018 IPR013130 Ferric reductase transmembrane component-like domain AMJ96_CH00913 de48738aaa70f47e610ed23c265c1947 419 Gene3D G3DSA:3.40.50.150 121 389 5.4E-91 T 12-10-2018 AMJ96_CH00913 de48738aaa70f47e610ed23c265c1947 419 PIRSF PIRSF003085 1 404 1.4E-124 T 12-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 AMJ96_CH00913 de48738aaa70f47e610ed23c265c1947 419 Pfam PF02353 Mycolic acid cyclopropane synthetase 116 380 3.7E-85 T 12-10-2018 AMJ96_CH00913 de48738aaa70f47e610ed23c265c1947 419 SUPERFAMILY SSF53335 123 385 4.82E-75 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH02233 c4677b4058d9e30158b4873c2c3dcd8a 270 SUPERFAMILY SSF51366 12 262 1.41E-87 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMJ96_CH02233 c4677b4058d9e30158b4873c2c3dcd8a 270 Pfam PF00218 Indole-3-glycerol phosphate synthase 5 260 3.6E-95 T 12-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 AMJ96_CH02233 c4677b4058d9e30158b4873c2c3dcd8a 270 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 3 262 35.712 T 12-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 AMJ96_CH02233 c4677b4058d9e30158b4873c2c3dcd8a 270 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 56 74 - T 12-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 AMJ96_CH02233 c4677b4058d9e30158b4873c2c3dcd8a 270 Gene3D G3DSA:3.20.20.70 1 266 2.7E-103 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_PC00284 8802949346b4d1402016fd8f3ef158b3 112 Gene3D G3DSA:2.60.120.10 2 112 6.9E-31 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PC00284 8802949346b4d1402016fd8f3ef158b3 112 SUPERFAMILY SSF51182 16 109 2.8E-21 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_PC00284 8802949346b4d1402016fd8f3ef158b3 112 Pfam PF07883 Cupin domain 38 95 1.1E-12 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_PC00284 8802949346b4d1402016fd8f3ef158b3 112 PIRSF PIRSF029883 8 112 1.1E-32 T 12-10-2018 IPR025499 Pectin degradation protein KdgF AMJ96_CH01529 73774086f52588a525ef37500f45a1a1 196 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 13 188 9.9E-42 T 12-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 AMJ96_CH01529 73774086f52588a525ef37500f45a1a1 196 Gene3D G3DSA:3.90.79.10 1 196 1.6E-53 T 12-10-2018 AMJ96_CH01529 73774086f52588a525ef37500f45a1a1 196 SUPERFAMILY SSF55811 13 192 1.15E-43 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_CH01529 73774086f52588a525ef37500f45a1a1 196 Pfam PF00293 NUDIX domain 47 172 1.3E-14 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMJ96_CH00741 6f99143b0ee89848f84788ef7169eea1 550 SMART SM00642 23 415 1.3E-128 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_CH00741 6f99143b0ee89848f84788ef7169eea1 550 SUPERFAMILY SSF51445 13 474 7.37E-131 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH00741 6f99143b0ee89848f84788ef7169eea1 550 Gene3D G3DSA:3.20.20.80 15 469 5.7E-175 T 12-10-2018 AMJ96_CH00741 6f99143b0ee89848f84788ef7169eea1 550 Pfam PF00128 Alpha amylase, catalytic domain 38 389 1.2E-86 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_CH00741 6f99143b0ee89848f84788ef7169eea1 550 SUPERFAMILY SSF51011 477 549 3.65E-10 T 12-10-2018 AMJ96_CH00741 6f99143b0ee89848f84788ef7169eea1 550 Gene3D G3DSA:2.60.40.1180 478 550 4.5E-10 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta AMJ96_CH00741 6f99143b0ee89848f84788ef7169eea1 550 Gene3D G3DSA:3.90.400.10 115 185 5.7E-175 T 12-10-2018 AMJ96_CH04114 eb053f710de95337b2ebba57106a8bc1 336 Gene3D G3DSA:3.40.190.10 34 302 2.9E-71 T 12-10-2018 AMJ96_CH04114 eb053f710de95337b2ebba57106a8bc1 336 Pfam PF09084 NMT1/THI5 like 41 253 2.3E-65 T 12-10-2018 IPR015168 SsuA/THI5-like AMJ96_CH04114 eb053f710de95337b2ebba57106a8bc1 336 Gene3D G3DSA:3.40.190.10 112 213 2.9E-71 T 12-10-2018 AMJ96_CH04114 eb053f710de95337b2ebba57106a8bc1 336 SUPERFAMILY SSF53850 33 280 2.48E-33 T 12-10-2018 AMJ96_CH00086 95b799185fbee69cd82b289087022229 295 Gene3D G3DSA:1.10.3720.10 18 282 1.1E-63 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00086 95b799185fbee69cd82b289087022229 295 SUPERFAMILY SSF161098 19 294 1.68E-72 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00086 95b799185fbee69cd82b289087022229 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 284 2.9E-21 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02958 621c31fb062653800ea209e4302edb1f 492 SUPERFAMILY SSF46785 19 87 1.27E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02958 621c31fb062653800ea209e4302edb1f 492 SUPERFAMILY SSF53383 120 487 3.38E-88 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH02958 621c31fb062653800ea209e4302edb1f 492 SMART SM00345 26 85 1.5E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02958 621c31fb062653800ea209e4302edb1f 492 Pfam PF00155 Aminotransferase class I and II 164 454 1.1E-16 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_CH02958 621c31fb062653800ea209e4302edb1f 492 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 59 9.1E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02958 621c31fb062653800ea209e4302edb1f 492 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 59 75 9.1E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02958 621c31fb062653800ea209e4302edb1f 492 Pfam PF00392 Bacterial regulatory proteins, gntR family 25 85 3.5E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02958 621c31fb062653800ea209e4302edb1f 492 Gene3D G3DSA:3.40.640.10 123 481 1.8E-112 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH02958 621c31fb062653800ea209e4302edb1f 492 Gene3D G3DSA:1.10.10.10 22 118 5.8E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02026 36d8f8de8645a479846581ee697605c9 338 Gene3D G3DSA:3.40.190.10 125 220 9.1E-53 T 12-10-2018 AMJ96_CH02026 36d8f8de8645a479846581ee697605c9 338 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 251 9.9E-28 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH02026 36d8f8de8645a479846581ee697605c9 338 SUPERFAMILY SSF53850 24 253 6.69E-47 T 12-10-2018 AMJ96_CH02026 36d8f8de8645a479846581ee697605c9 338 SMART SM00062 33 262 7.4E-48 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH02026 36d8f8de8645a479846581ee697605c9 338 Gene3D G3DSA:3.40.190.10 22 252 9.1E-53 T 12-10-2018 AMJ96_CH03010 dd4b7b9521d178f25571d3f9c9755645 310 Gene3D G3DSA:3.10.20.310 90 157 2.8E-11 T 12-10-2018 AMJ96_CH03010 dd4b7b9521d178f25571d3f9c9755645 310 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 60 293 22.844 T 12-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 AMJ96_CH03010 dd4b7b9521d178f25571d3f9c9755645 310 Pfam PF03799 Cell division protein FtsQ 162 275 4.0E-16 T 12-10-2018 IPR005548 Cell division protein FtsQ/DivIB AMJ96_CH03010 dd4b7b9521d178f25571d3f9c9755645 310 Gene3D G3DSA:3.40.50.11690 160 287 8.6E-7 T 12-10-2018 AMJ96_CH03010 dd4b7b9521d178f25571d3f9c9755645 310 Pfam PF08478 POTRA domain, FtsQ-type 90 158 6.2E-19 T 12-10-2018 IPR013685 POTRA domain, FtsQ-type AMJ96_PA00126 85543e65ab14f94cd2f1a5d823fdae88 160 PIRSF PIRSF011386 1 157 3.5E-63 T 12-10-2018 IPR018037 Nitrogen fixation protein FixH, Proteobacterial AMJ96_PA00126 85543e65ab14f94cd2f1a5d823fdae88 160 Pfam PF05751 FixH 6 143 1.5E-35 T 12-10-2018 IPR008620 Nitrogen fixation protein FixH AMJ96_CH01747 48a2ea94dfe4e8342fc9ca047e9101bb 621 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 608 45.449 T 12-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMJ96_CH01747 48a2ea94dfe4e8342fc9ca047e9101bb 621 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMJ96_CH01747 48a2ea94dfe4e8342fc9ca047e9101bb 621 Gene3D G3DSA:3.50.30.80 421 573 3.0E-57 T 12-10-2018 AMJ96_CH01747 48a2ea94dfe4e8342fc9ca047e9101bb 621 Pfam PF00920 Dehydratase family 34 605 3.2E-223 T 12-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMJ96_CH01747 48a2ea94dfe4e8342fc9ca047e9101bb 621 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMJ96_CH01747 48a2ea94dfe4e8342fc9ca047e9101bb 621 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 608 2.3E-254 T 12-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMJ96_CH01747 48a2ea94dfe4e8342fc9ca047e9101bb 621 SUPERFAMILY SSF52016 421 609 1.18E-61 T 12-10-2018 AMJ96_CH01747 48a2ea94dfe4e8342fc9ca047e9101bb 621 SUPERFAMILY SSF143975 4 420 8.5E-136 T 12-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMJ96_PC00390 1ac38d9f3b9bdc728f1e97a6d5eba4da 377 SMART SM00382 28 211 2.1E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00390 1ac38d9f3b9bdc728f1e97a6d5eba4da 377 Pfam PF08402 TOBE domain 280 351 3.3E-8 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_PC00390 1ac38d9f3b9bdc728f1e97a6d5eba4da 377 SUPERFAMILY SSF50331 237 355 1.31E-23 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_PC00390 1ac38d9f3b9bdc728f1e97a6d5eba4da 377 SUPERFAMILY SSF52540 4 244 1.4E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00390 1ac38d9f3b9bdc728f1e97a6d5eba4da 377 Pfam PF00005 ABC transporter 19 161 2.7E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00390 1ac38d9f3b9bdc728f1e97a6d5eba4da 377 Gene3D G3DSA:2.40.50.100 240 360 1.9E-34 T 12-10-2018 AMJ96_PC00390 1ac38d9f3b9bdc728f1e97a6d5eba4da 377 Gene3D G3DSA:3.40.50.300 2 238 2.4E-75 T 12-10-2018 AMJ96_PC00390 1ac38d9f3b9bdc728f1e97a6d5eba4da 377 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00390 1ac38d9f3b9bdc728f1e97a6d5eba4da 377 Gene3D G3DSA:2.40.50.140 287 343 1.9E-34 T 12-10-2018 AMJ96_PC00153 8a17ebde34d6ba045e9503a84a0d50f7 167 Gene3D G3DSA:3.30.530.20 8 164 2.7E-39 T 12-10-2018 IPR023393 START-like domain superfamily AMJ96_PC00153 8a17ebde34d6ba045e9503a84a0d50f7 167 SUPERFAMILY SSF55961 21 165 4.87E-39 T 12-10-2018 AMJ96_PC00153 8a17ebde34d6ba045e9503a84a0d50f7 167 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 32 162 6.4E-25 T 12-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like AMJ96_PD00699 bd0832f0f8a6389f703c608b325a58df 433 Pfam PF11800 Replication protein C C-terminal region 194 425 2.7E-77 T 12-10-2018 IPR021760 Replication protein-C C-terminal AMJ96_PD00699 bd0832f0f8a6389f703c608b325a58df 433 Pfam PF03428 Replication protein C N-terminal domain 13 186 3.9E-71 T 12-10-2018 IPR005090 Replication protein C AMJ96_PD00699 bd0832f0f8a6389f703c608b325a58df 433 SUPERFAMILY SSF46785 93 126 4.63E-5 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH04097 8263fdb4517c9072b09d70d6f22fe9c0 142 Pfam PF01037 Lrp/AsnC ligand binding domain 67 137 5.9E-14 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMJ96_CH04097 8263fdb4517c9072b09d70d6f22fe9c0 142 SUPERFAMILY SSF54909 62 140 1.74E-15 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH04097 8263fdb4517c9072b09d70d6f22fe9c0 142 SUPERFAMILY SSF46785 1 56 6.36E-10 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH04097 8263fdb4517c9072b09d70d6f22fe9c0 142 Gene3D G3DSA:1.10.10.10 2 53 1.6E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH04097 8263fdb4517c9072b09d70d6f22fe9c0 142 Pfam PF13404 AsnC-type helix-turn-helix domain 2 41 4.7E-12 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH04097 8263fdb4517c9072b09d70d6f22fe9c0 142 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 6.2E-9 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH04097 8263fdb4517c9072b09d70d6f22fe9c0 142 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 6.2E-9 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH04097 8263fdb4517c9072b09d70d6f22fe9c0 142 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 6.2E-9 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH04097 8263fdb4517c9072b09d70d6f22fe9c0 142 SMART SM00344 1 107 1.2E-11 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMJ96_CH04097 8263fdb4517c9072b09d70d6f22fe9c0 142 Gene3D G3DSA:3.30.70.920 55 141 2.7E-16 T 12-10-2018 AMJ96_CH01687 fe547347fafbec914ab2877d1467052e 230 SUPERFAMILY SSF50882 131 227 1.15E-19 T 12-10-2018 IPR016085 Protease inhibitor, beta-barrel domain GO:0004866 AMJ96_CH01687 fe547347fafbec914ab2877d1467052e 230 Pfam PF02974 Protease inhibitor Inh 133 227 2.4E-19 T 12-10-2018 IPR021140 Alkaline proteinase inhibitor/ Outer membrane lipoprotein Omp19 AMJ96_CH01687 fe547347fafbec914ab2877d1467052e 230 Pfam PF02974 Protease inhibitor Inh 36 110 1.4E-8 T 12-10-2018 IPR021140 Alkaline proteinase inhibitor/ Outer membrane lipoprotein Omp19 AMJ96_CH01687 fe547347fafbec914ab2877d1467052e 230 Gene3D G3DSA:2.40.128.10 131 228 2.5E-7 T 12-10-2018 AMJ96_CH01687 fe547347fafbec914ab2877d1467052e 230 SUPERFAMILY SSF50882 29 120 2.54E-14 T 12-10-2018 IPR016085 Protease inhibitor, beta-barrel domain GO:0004866 AMJ96_CH00193 760a6898bcd355ad5adb0d9e7ba46953 330 SUPERFAMILY SSF53822 35 262 5.05E-16 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH00193 760a6898bcd355ad5adb0d9e7ba46953 330 Gene3D G3DSA:3.40.50.2300 125 317 1.5E-94 T 12-10-2018 AMJ96_CH00193 760a6898bcd355ad5adb0d9e7ba46953 330 Gene3D G3DSA:3.40.50.2300 26 281 1.5E-94 T 12-10-2018 AMJ96_CH00193 760a6898bcd355ad5adb0d9e7ba46953 330 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 35 313 3.9E-59 T 12-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 AMJ96_PC00144 8ec10d4489216b81d38488fda6bcef00 393 Pfam PF00079 Serpin (serine protease inhibitor) 34 388 1.6E-51 T 12-10-2018 IPR023796 Serpin domain AMJ96_PC00144 8ec10d4489216b81d38488fda6bcef00 393 SUPERFAMILY SSF56574 30 388 3.53E-59 T 12-10-2018 IPR036186 Serpin superfamily AMJ96_PC00144 8ec10d4489216b81d38488fda6bcef00 393 Gene3D G3DSA:2.30.39.10 188 388 3.2E-60 T 12-10-2018 AMJ96_PC00144 8ec10d4489216b81d38488fda6bcef00 393 Gene3D G3DSA:3.30.497.10 47 345 3.2E-60 T 12-10-2018 AMJ96_PC00144 8ec10d4489216b81d38488fda6bcef00 393 SMART SM00093 45 388 1.1E-21 T 12-10-2018 IPR023796 Serpin domain AMJ96_PD00457 ef50c8436c9d35430f199744a532c59f 316 SUPERFAMILY SSF161098 95 299 7.19E-18 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00457 ef50c8436c9d35430f199744a532c59f 316 Gene3D G3DSA:1.10.3720.10 90 310 2.1E-21 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00457 ef50c8436c9d35430f199744a532c59f 316 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 316 2.8E-31 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00083 afa35346a05b58fa70777d66fc0a3b04 557 ProSitePatterns PS01233 Urocanase signature. 441 456 - T 12-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_PC00083 afa35346a05b58fa70777d66fc0a3b04 557 Hamap MF_00577 Urocanate hydratase [hutU]. 5 555 50.537 T 12-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_PC00083 afa35346a05b58fa70777d66fc0a3b04 557 SUPERFAMILY SSF111326 7 553 2.35E-260 T 12-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_PC00083 afa35346a05b58fa70777d66fc0a3b04 557 Gene3D G3DSA:3.40.1770.10 16 541 8.4E-257 T 12-10-2018 AMJ96_PC00083 afa35346a05b58fa70777d66fc0a3b04 557 Pfam PF01175 Urocanase Rossmann-like domain 140 348 1.2E-85 T 12-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_PC00083 afa35346a05b58fa70777d66fc0a3b04 557 Pfam PF17392 Urocanase C-terminal domain 351 545 1.1E-90 T 12-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_PC00083 afa35346a05b58fa70777d66fc0a3b04 557 Pfam PF17391 Urocanase N-terminal domain 11 137 2.5E-61 T 12-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_PC00083 afa35346a05b58fa70777d66fc0a3b04 557 PIRSF PIRSF001423 2 556 4.4E-292 T 12-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_PC00083 afa35346a05b58fa70777d66fc0a3b04 557 TIGRFAM TIGR01228 hutU: urocanate hydratase 9 552 4.3E-293 T 12-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_PC00083 afa35346a05b58fa70777d66fc0a3b04 557 Gene3D G3DSA:3.40.50.10730 141 348 8.4E-257 T 12-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_CH02005 e7b40213f9cbb530b56c6439e16423b6 213 SUPERFAMILY SSF52266 3 206 8.55E-26 T 12-10-2018 AMJ96_CH02005 e7b40213f9cbb530b56c6439e16423b6 213 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 7 192 1.4E-18 T 12-10-2018 IPR013830 SGNH hydrolase-type esterase domain AMJ96_CH02005 e7b40213f9cbb530b56c6439e16423b6 213 Gene3D G3DSA:3.40.50.1110 1 213 5.0E-81 T 12-10-2018 IPR036514 SGNH hydrolase superfamily AMJ96_CH03209 6d84c9aeaf9aa8a5f4a00794777c9d90 216 SUPERFAMILY SSF55811 51 211 3.93E-36 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_CH03209 6d84c9aeaf9aa8a5f4a00794777c9d90 216 Pfam PF00293 NUDIX domain 56 169 3.4E-14 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMJ96_CH03209 6d84c9aeaf9aa8a5f4a00794777c9d90 216 Gene3D G3DSA:3.90.79.10 35 214 1.2E-49 T 12-10-2018 AMJ96_CH03518 391fd44d65fdaa8431510003eb469fbc 287 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 97 252 6.3E-35 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH03518 391fd44d65fdaa8431510003eb469fbc 287 Pfam PF00990 Diguanylate cyclase, GGDEF domain 101 249 2.2E-30 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH03518 391fd44d65fdaa8431510003eb469fbc 287 Gene3D G3DSA:3.30.70.270 99 262 1.6E-41 T 12-10-2018 AMJ96_CH03518 391fd44d65fdaa8431510003eb469fbc 287 SMART SM00267 89 253 7.4E-40 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH03518 391fd44d65fdaa8431510003eb469fbc 287 SUPERFAMILY SSF55073 105 252 8.63E-36 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_PC00098 4a8a7b356d6c22a92aef16948dab2d58 853 Pfam PF16350 FAD dependent oxidoreductase central domain 385 441 6.8E-13 T 12-10-2018 IPR032503 FAD dependent oxidoreductase, central domain AMJ96_PC00098 4a8a7b356d6c22a92aef16948dab2d58 853 Gene3D G3DSA:3.50.50.60 10 401 1.8E-99 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00098 4a8a7b356d6c22a92aef16948dab2d58 853 Gene3D G3DSA:3.30.9.10 85 345 1.8E-99 T 12-10-2018 AMJ96_PC00098 4a8a7b356d6c22a92aef16948dab2d58 853 SUPERFAMILY SSF51905 8 419 1.3E-42 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00098 4a8a7b356d6c22a92aef16948dab2d58 853 Gene3D G3DSA:3.30.1360.120 436 713 3.3E-76 T 12-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMJ96_PC00098 4a8a7b356d6c22a92aef16948dab2d58 853 Pfam PF01266 FAD dependent oxidoreductase 9 382 2.4E-34 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_PC00098 4a8a7b356d6c22a92aef16948dab2d58 853 SUPERFAMILY SSF101790 778 852 2.62E-11 T 12-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal AMJ96_PC00098 4a8a7b356d6c22a92aef16948dab2d58 853 Pfam PF01571 Aminomethyltransferase folate-binding domain 444 722 2.7E-54 T 12-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain AMJ96_PC00098 4a8a7b356d6c22a92aef16948dab2d58 853 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 730 836 6.3E-7 T 12-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMJ96_PC00098 4a8a7b356d6c22a92aef16948dab2d58 853 Gene3D G3DSA:2.40.30.110 749 836 4.6E-12 T 12-10-2018 AMJ96_PC00098 4a8a7b356d6c22a92aef16948dab2d58 853 SUPERFAMILY SSF54373 224 344 7.06E-16 T 12-10-2018 AMJ96_PC00098 4a8a7b356d6c22a92aef16948dab2d58 853 Gene3D G3DSA:3.30.70.1400 515 735 3.3E-76 T 12-10-2018 AMJ96_PC00098 4a8a7b356d6c22a92aef16948dab2d58 853 SUPERFAMILY SSF103025 436 742 8.32E-67 T 12-10-2018 AMJ96_PC00369 90727c49a7fbfb4e25c604ee46052e14 309 Gene3D G3DSA:3.60.130.10 9 308 3.4E-89 T 12-10-2018 AMJ96_PC00369 90727c49a7fbfb4e25c604ee46052e14 309 SUPERFAMILY SSF51197 15 295 1.01E-87 T 12-10-2018 AMJ96_PC00369 90727c49a7fbfb4e25c604ee46052e14 309 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 16 281 3.1E-56 T 12-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 AMJ96_CH01002 cf99d4196c40b009991c945c8b4c299c 229 SUPERFAMILY SSF56784 4 219 2.76E-50 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_CH01002 cf99d4196c40b009991c945c8b4c299c 229 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 75 185 1.6E-13 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH01002 cf99d4196c40b009991c945c8b4c299c 229 Gene3D G3DSA:3.40.50.1000 7 206 9.0E-69 T 12-10-2018 IPR023214 HAD superfamily AMJ96_CH01002 cf99d4196c40b009991c945c8b4c299c 229 Gene3D G3DSA:1.10.150.240 19 85 9.0E-69 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMJ96_CH01002 cf99d4196c40b009991c945c8b4c299c 229 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 185 4.6E-19 T 12-10-2018 AMJ96_CH00686 a7cf515335352ecbaab3c91ee21f2b15 248 SMART SM00421 185 242 3.8E-22 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00686 a7cf515335352ecbaab3c91ee21f2b15 248 Gene3D G3DSA:1.10.10.10 185 248 5.4E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00686 a7cf515335352ecbaab3c91ee21f2b15 248 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 202 218 5.5E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00686 a7cf515335352ecbaab3c91ee21f2b15 248 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 218 230 5.5E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00686 a7cf515335352ecbaab3c91ee21f2b15 248 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 188 202 5.5E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00686 a7cf515335352ecbaab3c91ee21f2b15 248 ProSitePatterns PS00622 LuxR-type HTH domain signature. 202 229 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00686 a7cf515335352ecbaab3c91ee21f2b15 248 Pfam PF00196 Bacterial regulatory proteins, luxR family 188 242 1.0E-16 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00686 a7cf515335352ecbaab3c91ee21f2b15 248 SUPERFAMILY SSF46894 171 248 1.8E-19 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_PB00244 f6bba2dd51432721cdbaf495f57d1da6 177 Gene3D G3DSA:2.30.110.20 14 170 9.5E-30 T 12-10-2018 IPR036624 Hcp1-like superfamily AMJ96_PB00244 f6bba2dd51432721cdbaf495f57d1da6 177 Pfam PF05638 Type VI secretion system effector, Hcp 34 146 1.4E-17 T 12-10-2018 IPR008514 Type VI secretion system effector, Hcp AMJ96_PB00244 f6bba2dd51432721cdbaf495f57d1da6 177 SUPERFAMILY SSF141452 31 168 6.15E-20 T 12-10-2018 IPR036624 Hcp1-like superfamily AMJ96_CH00656 054eec610f84b2415cecd17a230ad455 277 TIGRFAM TIGR02772 Ku_bact: Ku protein 3 256 4.9E-84 T 12-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMJ96_CH00656 054eec610f84b2415cecd17a230ad455 277 SMART SM00559 55 183 2.1E-8 T 12-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 AMJ96_CH00656 054eec610f84b2415cecd17a230ad455 277 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 3 256 29.777 T 12-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMJ96_CH00656 054eec610f84b2415cecd17a230ad455 277 PIRSF PIRSF006493 1 277 6.5E-101 T 12-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMJ96_CH00656 054eec610f84b2415cecd17a230ad455 277 Gene3D G3DSA:2.40.290.10 4 168 2.3E-12 T 12-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily AMJ96_CH00656 054eec610f84b2415cecd17a230ad455 277 Pfam PF02735 Ku70/Ku80 beta-barrel domain 14 179 1.1E-27 T 12-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 AMJ96_CH00656 054eec610f84b2415cecd17a230ad455 277 SUPERFAMILY SSF100939 4 258 5.49E-49 T 12-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily AMJ96_CH01405 3f9a5a4d0b57edf9d44b7030063face0 367 Gene3D G3DSA:3.90.550.10 10 277 2.9E-49 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH01405 3f9a5a4d0b57edf9d44b7030063face0 367 SUPERFAMILY SSF53448 24 245 1.58E-47 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH01405 3f9a5a4d0b57edf9d44b7030063face0 367 Pfam PF00535 Glycosyl transferase family 2 25 133 1.5E-27 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_PD00402 9a381aeefd2554ecd77cf7f130330b38 335 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 12-10-2018 AMJ96_PD00402 9a381aeefd2554ecd77cf7f130330b38 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 47 1.9E-15 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00402 9a381aeefd2554ecd77cf7f130330b38 335 SUPERFAMILY SSF47413 1 59 1.99E-16 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PD00402 9a381aeefd2554ecd77cf7f130330b38 335 Pfam PF13377 Periplasmic binding protein-like domain 168 332 2.2E-32 T 12-10-2018 AMJ96_PD00402 9a381aeefd2554ecd77cf7f130330b38 335 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 5.3E-5 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00402 9a381aeefd2554ecd77cf7f130330b38 335 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 5.3E-5 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00402 9a381aeefd2554ecd77cf7f130330b38 335 Gene3D G3DSA:3.40.50.2300 56 306 8.0E-68 T 12-10-2018 AMJ96_PD00402 9a381aeefd2554ecd77cf7f130330b38 335 Gene3D G3DSA:3.40.50.2300 160 289 8.0E-68 T 12-10-2018 AMJ96_PD00402 9a381aeefd2554ecd77cf7f130330b38 335 Gene3D G3DSA:1.10.260.40 1 55 2.1E-19 T 12-10-2018 AMJ96_PD00402 9a381aeefd2554ecd77cf7f130330b38 335 SUPERFAMILY SSF53822 61 333 1.39E-63 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PD00402 9a381aeefd2554ecd77cf7f130330b38 335 SMART SM00354 1 71 7.7E-23 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH02795 949b423f58eed886d67df6a92345d2a1 695 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 191 283 2.1E-26 T 12-10-2018 IPR010221 VCBS repeat AMJ96_CH02795 949b423f58eed886d67df6a92345d2a1 695 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 304 390 1.9E-25 T 12-10-2018 IPR010221 VCBS repeat AMJ96_CH02795 949b423f58eed886d67df6a92345d2a1 695 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 119 170 3.8E-4 T 12-10-2018 IPR010221 VCBS repeat AMJ96_CH02795 949b423f58eed886d67df6a92345d2a1 695 Gene3D G3DSA:2.150.10.10 489 651 3.6E-19 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH02795 949b423f58eed886d67df6a92345d2a1 695 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 499 520 1.5E-6 T 12-10-2018 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 AMJ96_CH02795 949b423f58eed886d67df6a92345d2a1 695 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 183 204 1.5E-6 T 12-10-2018 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 AMJ96_CH02795 949b423f58eed886d67df6a92345d2a1 695 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 498 514 0.0058 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH02795 949b423f58eed886d67df6a92345d2a1 695 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 534 551 0.11 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH02795 949b423f58eed886d67df6a92345d2a1 695 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 516 533 0.02 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 AMJ96_CH02795 949b423f58eed886d67df6a92345d2a1 695 SUPERFAMILY SSF51120 482 613 1.83E-9 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal AMJ96_CH02795 949b423f58eed886d67df6a92345d2a1 695 PRINTS PR00313 NodO calcium binding signature 508 516 8.6E-9 T 12-10-2018 AMJ96_CH02795 949b423f58eed886d67df6a92345d2a1 695 PRINTS PR00313 NodO calcium binding signature 535 543 8.6E-9 T 12-10-2018 AMJ96_CH02795 949b423f58eed886d67df6a92345d2a1 695 PRINTS PR00313 NodO calcium binding signature 496 507 8.6E-9 T 12-10-2018 AMJ96_CH02795 949b423f58eed886d67df6a92345d2a1 695 PRINTS PR00313 NodO calcium binding signature 544 553 8.6E-9 T 12-10-2018 AMJ96_PB00293 7ce6e19dff4d132def8b7909147ca149 496 PRINTS PR00359 B-class P450 signature 446 457 3.1E-32 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00293 7ce6e19dff4d132def8b7909147ca149 496 PRINTS PR00359 B-class P450 signature 192 203 3.1E-32 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00293 7ce6e19dff4d132def8b7909147ca149 496 PRINTS PR00359 B-class P450 signature 416 431 3.1E-32 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00293 7ce6e19dff4d132def8b7909147ca149 496 PRINTS PR00359 B-class P450 signature 291 313 3.1E-32 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00293 7ce6e19dff4d132def8b7909147ca149 496 PRINTS PR00359 B-class P450 signature 437 446 3.1E-32 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00293 7ce6e19dff4d132def8b7909147ca149 496 PRINTS PR00359 B-class P450 signature 256 271 3.1E-32 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00293 7ce6e19dff4d132def8b7909147ca149 496 PRINTS PR00359 B-class P450 signature 239 255 3.1E-32 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00293 7ce6e19dff4d132def8b7909147ca149 496 PRINTS PR00359 B-class P450 signature 388 415 3.1E-32 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00293 7ce6e19dff4d132def8b7909147ca149 496 Pfam PF00067 Cytochrome P450 289 466 1.3E-18 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00293 7ce6e19dff4d132def8b7909147ca149 496 SUPERFAMILY SSF48264 122 495 2.62E-81 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00293 7ce6e19dff4d132def8b7909147ca149 496 Gene3D G3DSA:1.10.630.10 83 496 1.4E-93 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH02679 1a1e1b165f82d0424a132343231de109 325 SUPERFAMILY SSF48537 21 321 7.06E-44 T 12-10-2018 IPR008947 Phospholipase C/P1 nuclease domain superfamily GO:0016788 AMJ96_CH02679 1a1e1b165f82d0424a132343231de109 325 Gene3D G3DSA:1.10.575.10 21 325 2.3E-37 T 12-10-2018 IPR008947 Phospholipase C/P1 nuclease domain superfamily GO:0016788 AMJ96_CH02679 1a1e1b165f82d0424a132343231de109 325 Pfam PF02265 S1/P1 Nuclease 21 324 1.7E-40 T 12-10-2018 IPR003154 S1/P1 nuclease GO:0003676|GO:0004519|GO:0006308 AMJ96_CH03897 abe893c473336f36a9a3aec65f4b05a5 315 SUPERFAMILY SSF53822 8 308 1.85E-63 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH03897 abe893c473336f36a9a3aec65f4b05a5 315 Gene3D G3DSA:3.40.50.2300 135 308 2.4E-89 T 12-10-2018 AMJ96_CH03897 abe893c473336f36a9a3aec65f4b05a5 315 Gene3D G3DSA:3.40.50.2300 28 296 2.4E-89 T 12-10-2018 AMJ96_CH03897 abe893c473336f36a9a3aec65f4b05a5 315 Pfam PF13407 Periplasmic binding protein domain 28 274 1.8E-42 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_CH00989 809b2bdbfdef7946d3e9beaf1f58cc61 279 Pfam PF11412 Disulphide bond corrector protein DsbC 52 156 6.1E-16 T 12-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain AMJ96_PC00458 34ef79451b6df3d74eee76dce71413fa 252 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 76 109 - T 12-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMJ96_PC00458 34ef79451b6df3d74eee76dce71413fa 252 Gene3D G3DSA:3.30.950.10 111 231 2.8E-41 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AMJ96_PC00458 34ef79451b6df3d74eee76dce71413fa 252 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 3 249 2.4E-94 T 12-10-2018 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 AMJ96_PC00458 34ef79451b6df3d74eee76dce71413fa 252 Gene3D G3DSA:3.40.1010.10 1 110 4.6E-27 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMJ96_PC00458 34ef79451b6df3d74eee76dce71413fa 252 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 208 4.3E-40 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMJ96_PC00458 34ef79451b6df3d74eee76dce71413fa 252 SUPERFAMILY SSF53790 2 248 3.4E-62 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMJ96_PC00458 34ef79451b6df3d74eee76dce71413fa 252 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 6 20 - T 12-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMJ96_CH00964 c377833adf9facb4bf98708f721b4f02 427 SUPERFAMILY SSF110997 343 423 2.22E-6 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 AMJ96_CH00964 c377833adf9facb4bf98708f721b4f02 427 SUPERFAMILY SSF56601 5 259 5.99E-74 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMJ96_CH00964 c377833adf9facb4bf98708f721b4f02 427 Gene3D G3DSA:3.40.710.10 6 274 1.5E-78 T 12-10-2018 AMJ96_CH00964 c377833adf9facb4bf98708f721b4f02 427 Pfam PF05036 Sporulation related domain 343 423 1.9E-11 T 12-10-2018 IPR007730 Sporulation-like domain GO:0042834 AMJ96_CH00964 c377833adf9facb4bf98708f721b4f02 427 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 16 243 6.6E-63 T 12-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AMJ96_CH00964 c377833adf9facb4bf98708f721b4f02 427 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 130 143 4.1E-12 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMJ96_CH00964 c377833adf9facb4bf98708f721b4f02 427 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 50 61 4.1E-12 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMJ96_CH00964 c377833adf9facb4bf98708f721b4f02 427 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 103 120 4.1E-12 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMJ96_CH00483 20e2ec130ed17ce48e7f4dabc13d27f2 157 Pfam PF05025 RbsD / FucU transport protein family 4 140 2.4E-32 T 12-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AMJ96_CH00483 20e2ec130ed17ce48e7f4dabc13d27f2 157 Gene3D G3DSA:3.40.1650.10 1 143 7.8E-44 T 12-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AMJ96_CH00483 20e2ec130ed17ce48e7f4dabc13d27f2 157 SUPERFAMILY SSF102546 1 141 9.42E-38 T 12-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AMJ96_CH02347 852eb20bb09e6e52514fe3fac6aa0192 192 Gene3D G3DSA:2.40.160.20 71 190 9.2E-8 T 12-10-2018 AMJ96_CH02347 852eb20bb09e6e52514fe3fac6aa0192 192 Pfam PF09411 Lipid A 3-O-deacylase (PagL) 78 191 2.5E-22 T 12-10-2018 IPR018550 Lipid A 3-O-deacylase-related AMJ96_CH00725 05fec744f52e6d2afa4dc54544911cf9 149 Hamap MF_00783 Probable flagellum biosynthesis repressor protein FlbT [flbT]. 5 130 31.337 T 12-10-2018 IPR009967 Flagellum biosynthesis repressor FlbT GO:0006402|GO:0048027|GO:1902209 AMJ96_CH00725 05fec744f52e6d2afa4dc54544911cf9 149 Pfam PF07378 Flagellar protein FlbT 5 128 7.1E-42 T 12-10-2018 IPR009967 Flagellum biosynthesis repressor FlbT GO:0006402|GO:0048027|GO:1902209 AMJ96_CH00725 05fec744f52e6d2afa4dc54544911cf9 149 PIRSF PIRSF009533 3 147 1.4E-61 T 12-10-2018 IPR009967 Flagellum biosynthesis repressor FlbT GO:0006402|GO:0048027|GO:1902209 AMJ96_PB00282 b63f244fa5f33aa61b395bc42df318a1 74 ProDom PD594998 EXOPOLYSACCHARIDE REPRESSOR PLASMID PRODUCTION TRANSMEMBRANE MEMBRANE NODULATION SYNTHESIS SYRA PSIA 2 57 2.0E-5 T 12-10-2018 IPR024239 Exopolysaccharide production repressor AMJ96_CH00188 50d72ea4d3f45139a4cb34331b35888f 434 SUPERFAMILY SSF51690 139 423 7.85E-88 T 12-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AMJ96_CH00188 50d72ea4d3f45139a4cb34331b35888f 434 PIRSF PIRSF000484 10 419 7.4E-66 T 12-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 AMJ96_CH00188 50d72ea4d3f45139a4cb34331b35888f 434 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 17 427 41.908 T 12-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AMJ96_CH00188 50d72ea4d3f45139a4cb34331b35888f 434 Gene3D G3DSA:3.20.140.10 1 409 9.9E-167 T 12-10-2018 AMJ96_CH00188 50d72ea4d3f45139a4cb34331b35888f 434 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 20 421 8.8E-93 T 12-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AMJ96_CH00188 50d72ea4d3f45139a4cb34331b35888f 434 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 190 423 3.9E-71 T 12-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 AMJ96_CH00188 50d72ea4d3f45139a4cb34331b35888f 434 SUPERFAMILY SSF54675 2 157 2.91E-46 T 12-10-2018 AMJ96_CH02078 f8bf7f6c06b10cf85ba82702b9284d8e 596 Pfam PF00664 ABC transporter transmembrane region 32 302 2.5E-21 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_CH02078 f8bf7f6c06b10cf85ba82702b9284d8e 596 Pfam PF00005 ABC transporter 367 515 9.0E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02078 f8bf7f6c06b10cf85ba82702b9284d8e 596 Gene3D G3DSA:1.20.1560.10 3 337 3.4E-50 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH02078 f8bf7f6c06b10cf85ba82702b9284d8e 596 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02078 f8bf7f6c06b10cf85ba82702b9284d8e 596 SUPERFAMILY SSF52540 340 586 4.05E-88 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02078 f8bf7f6c06b10cf85ba82702b9284d8e 596 SUPERFAMILY SSF90123 21 324 5.36E-47 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH02078 f8bf7f6c06b10cf85ba82702b9284d8e 596 Gene3D G3DSA:3.40.50.300 340 593 3.7E-91 T 12-10-2018 AMJ96_CH02078 f8bf7f6c06b10cf85ba82702b9284d8e 596 SMART SM00382 375 561 1.7E-20 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00416 8ed1b03e0cd0a199b61c6c6a3e3b632a 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 308 2.9E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00416 8ed1b03e0cd0a199b61c6c6a3e3b632a 318 SUPERFAMILY SSF161098 78 308 3.4E-65 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00416 8ed1b03e0cd0a199b61c6c6a3e3b632a 318 Gene3D G3DSA:1.10.3720.10 74 317 8.3E-78 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01307 931b70f6445fde34b9e96e0bef7b4e6f 158 Pfam PF03692 Putative zinc- or iron-chelating domain 24 91 1.9E-8 T 12-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein AMJ96_CH01307 931b70f6445fde34b9e96e0bef7b4e6f 158 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 2 147 43.41 T 12-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 AMJ96_CH01307 931b70f6445fde34b9e96e0bef7b4e6f 158 PIRSF PIRSF006173 1 147 7.8E-67 T 12-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 AMJ96_CH03185 4d12fcf46754c9010c197ece0df83040 783 SMART SM00304 169 221 1.7E-4 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH03185 4d12fcf46754c9010c197ece0df83040 783 SUPERFAMILY SSF55785 215 335 1.11E-10 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH03185 4d12fcf46754c9010c197ece0df83040 783 SMART SM00091 228 294 0.0013 T 12-10-2018 IPR000014 PAS domain AMJ96_CH03185 4d12fcf46754c9010c197ece0df83040 783 Gene3D G3DSA:3.30.450.20 240 343 9.6E-9 T 12-10-2018 AMJ96_CH03185 4d12fcf46754c9010c197ece0df83040 783 Pfam PF13426 PAS domain 242 336 3.1E-6 T 12-10-2018 IPR000014 PAS domain AMJ96_CH03185 4d12fcf46754c9010c197ece0df83040 783 Gene3D G3DSA:3.20.20.450 517 774 2.2E-82 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH03185 4d12fcf46754c9010c197ece0df83040 783 SMART SM00052 516 767 2.7E-89 T 12-10-2018 IPR001633 EAL domain AMJ96_CH03185 4d12fcf46754c9010c197ece0df83040 783 SUPERFAMILY SSF141868 523 773 4.71E-74 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH03185 4d12fcf46754c9010c197ece0df83040 783 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 232 342 1.5E-10 T 12-10-2018 IPR000014 PAS domain AMJ96_CH03185 4d12fcf46754c9010c197ece0df83040 783 Gene3D G3DSA:1.10.287.130 170 239 6.1E-6 T 12-10-2018 AMJ96_CH03185 4d12fcf46754c9010c197ece0df83040 783 Pfam PF00563 EAL domain 524 762 1.8E-63 T 12-10-2018 IPR001633 EAL domain AMJ96_CH03185 4d12fcf46754c9010c197ece0df83040 783 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 346 505 2.3E-38 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH03185 4d12fcf46754c9010c197ece0df83040 783 SUPERFAMILY SSF158472 170 217 4.58E-7 T 12-10-2018 AMJ96_CH03185 4d12fcf46754c9010c197ece0df83040 783 Pfam PF00672 HAMP domain 171 217 1.0E-6 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH03185 4d12fcf46754c9010c197ece0df83040 783 Gene3D G3DSA:3.30.70.270 344 510 1.4E-50 T 12-10-2018 AMJ96_CH03185 4d12fcf46754c9010c197ece0df83040 783 SUPERFAMILY SSF55073 353 507 1.96E-42 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03185 4d12fcf46754c9010c197ece0df83040 783 Pfam PF00990 Diguanylate cyclase, GGDEF domain 348 501 5.9E-41 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH03185 4d12fcf46754c9010c197ece0df83040 783 SMART SM00267 337 506 3.5E-52 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PB00306 a7e1351279ad76551c2e33c8f23d606a 435 Gene3D G3DSA:3.30.9.90 70 376 1.2E-64 T 12-10-2018 AMJ96_PB00306 a7e1351279ad76551c2e33c8f23d606a 435 Gene3D G3DSA:3.50.50.60 6 366 1.2E-64 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PB00306 a7e1351279ad76551c2e33c8f23d606a 435 SUPERFAMILY SSF51905 2 389 3.14E-41 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PB00306 a7e1351279ad76551c2e33c8f23d606a 435 SUPERFAMILY SSF54373 184 286 1.29E-21 T 12-10-2018 AMJ96_PB00306 a7e1351279ad76551c2e33c8f23d606a 435 Pfam PF12831 FAD dependent oxidoreductase 7 160 9.2E-7 T 12-10-2018 IPR039649 Digeranylgeranylglycerophospholipid reductase, N-terminal AMJ96_CH00137 fc8512e59a62bd5f2dbae2433ef16877 284 Gene3D G3DSA:3.40.190.10 2 90 3.6E-29 T 12-10-2018 AMJ96_CH00137 fc8512e59a62bd5f2dbae2433ef16877 284 Pfam PF00800 Prephenate dehydratase 8 184 4.9E-54 T 12-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AMJ96_CH00137 fc8512e59a62bd5f2dbae2433ef16877 284 SUPERFAMILY SSF55021 177 277 1.97E-24 T 12-10-2018 AMJ96_CH00137 fc8512e59a62bd5f2dbae2433ef16877 284 PIRSF PIRSF001500 2 280 2.7E-63 T 12-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AMJ96_CH00137 fc8512e59a62bd5f2dbae2433ef16877 284 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 158 180 - T 12-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AMJ96_CH00137 fc8512e59a62bd5f2dbae2433ef16877 284 Gene3D G3DSA:3.30.70.260 191 278 5.6E-23 T 12-10-2018 AMJ96_CH00137 fc8512e59a62bd5f2dbae2433ef16877 284 Gene3D G3DSA:3.40.190.10 91 171 3.4E-25 T 12-10-2018 AMJ96_CH00137 fc8512e59a62bd5f2dbae2433ef16877 284 SUPERFAMILY SSF53850 7 188 2.35E-61 T 12-10-2018 AMJ96_CH02616 0366ce59b096da56b38cb67a67005b1f 124 SUPERFAMILY SSF50199 13 120 2.62E-11 T 12-10-2018 AMJ96_CH02616 0366ce59b096da56b38cb67a67005b1f 124 Pfam PF00565 Staphylococcal nuclease homologue 37 118 1.8E-4 T 12-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 AMJ96_CH02616 0366ce59b096da56b38cb67a67005b1f 124 Gene3D G3DSA:2.40.50.90 6 111 6.9E-12 T 12-10-2018 IPR035437 SNase-like, OB-fold superfamily AMJ96_CH04210 f7676761ca602545c5d48339cbce7c54 265 SMART SM00079 33 260 1.7E-5 T 12-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AMJ96_CH04210 f7676761ca602545c5d48339cbce7c54 265 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 259 6.6E-56 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH04210 f7676761ca602545c5d48339cbce7c54 265 Gene3D G3DSA:3.40.190.10 119 221 4.4E-59 T 12-10-2018 AMJ96_CH04210 f7676761ca602545c5d48339cbce7c54 265 SMART SM00062 33 260 2.2E-50 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH04210 f7676761ca602545c5d48339cbce7c54 265 Gene3D G3DSA:3.40.190.10 36 258 4.4E-59 T 12-10-2018 AMJ96_CH04210 f7676761ca602545c5d48339cbce7c54 265 SUPERFAMILY SSF53850 7 259 5.59E-63 T 12-10-2018 AMJ96_PD00553 b96c321e3c85d22857780e4c23309792 257 TIGRFAM TIGR03951 Fe_III_red_FhuF: siderophore-iron reductase FhuF 75 253 1.0E-59 T 12-10-2018 IPR008090 Ferric iron reductase AMJ96_PD00553 b96c321e3c85d22857780e4c23309792 257 PRINTS PR01714 Ferric iron reductase signature 159 175 3.9E-5 T 12-10-2018 IPR008090 Ferric iron reductase AMJ96_PD00553 b96c321e3c85d22857780e4c23309792 257 PRINTS PR01714 Ferric iron reductase signature 81 96 3.9E-5 T 12-10-2018 IPR008090 Ferric iron reductase AMJ96_PD00553 b96c321e3c85d22857780e4c23309792 257 PRINTS PR01714 Ferric iron reductase signature 231 249 3.9E-5 T 12-10-2018 IPR008090 Ferric iron reductase AMJ96_PD00553 b96c321e3c85d22857780e4c23309792 257 Pfam PF11575 FhuF 2Fe-2S C-terminal domain 231 252 2.9E-7 T 12-10-2018 IPR024726 Ferric iron reductase, C-terminal GO:0051537 AMJ96_PD00553 b96c321e3c85d22857780e4c23309792 257 Pfam PF06276 Ferric iron reductase FhuF-like transporter 81 224 2.5E-20 T 12-10-2018 IPR022770 Ferric iron reductase FhuF domain AMJ96_CH00951 83e494151b3d49205317a6a1d3fee296 224 Pfam PF00005 ABC transporter 26 161 3.4E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00951 83e494151b3d49205317a6a1d3fee296 224 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00951 83e494151b3d49205317a6a1d3fee296 224 SUPERFAMILY SSF52540 10 207 2.73E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00951 83e494151b3d49205317a6a1d3fee296 224 SMART SM00382 26 205 2.6E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00951 83e494151b3d49205317a6a1d3fee296 224 Gene3D G3DSA:3.40.50.300 2 224 1.2E-55 T 12-10-2018 AMJ96_CH00852 99cabfc44bcd5d7eb0b9a76bc28f9298 282 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 18 246 8.7E-43 T 12-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA AMJ96_CH00852 99cabfc44bcd5d7eb0b9a76bc28f9298 282 Pfam PF13344 Haloacid dehalogenase-like hydrolase 18 115 7.7E-18 T 12-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA AMJ96_CH00852 99cabfc44bcd5d7eb0b9a76bc28f9298 282 TIGRFAM TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family 10 243 5.9E-43 T 12-10-2018 IPR006356 HAD-superfamily hydrolase, subfamily IIA, hypothetical 3 AMJ96_CH00852 99cabfc44bcd5d7eb0b9a76bc28f9298 282 Gene3D G3DSA:3.40.50.1000 83 192 4.6E-52 T 12-10-2018 IPR023214 HAD superfamily AMJ96_CH00852 99cabfc44bcd5d7eb0b9a76bc28f9298 282 Gene3D G3DSA:3.40.50.1000 16 250 4.6E-52 T 12-10-2018 IPR023214 HAD superfamily AMJ96_CH00852 99cabfc44bcd5d7eb0b9a76bc28f9298 282 SUPERFAMILY SSF56784 15 255 2.21E-44 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_CH00852 99cabfc44bcd5d7eb0b9a76bc28f9298 282 Pfam PF13242 HAD-hyrolase-like 192 253 2.2E-9 T 12-10-2018 AMJ96_CH03960 632668d98e07d216b23c42c261f367b3 303 Gene3D G3DSA:2.120.10.30 3 295 4.1E-111 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMJ96_CH03960 632668d98e07d216b23c42c261f367b3 303 SUPERFAMILY SSF63829 6 301 4.91E-70 T 12-10-2018 AMJ96_CH03960 632668d98e07d216b23c42c261f367b3 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 164 186 4.5E-7 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_CH03960 632668d98e07d216b23c42c261f367b3 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 230 247 4.5E-7 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_CH03960 632668d98e07d216b23c42c261f367b3 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 34 51 4.5E-7 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_CH03960 632668d98e07d216b23c42c261f367b3 303 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 33 287 7.7E-59 T 12-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region AMJ96_CH03914 c246f6ee0243b3741ba673b9d7d18391 328 Pfam PF08402 TOBE domain 257 323 1.4E-11 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_CH03914 c246f6ee0243b3741ba673b9d7d18391 328 Pfam PF00005 ABC transporter 21 162 9.4E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03914 c246f6ee0243b3741ba673b9d7d18391 328 SUPERFAMILY SSF52540 5 242 4.24E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03914 c246f6ee0243b3741ba673b9d7d18391 328 SUPERFAMILY SSF50331 238 326 6.12E-12 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH03914 c246f6ee0243b3741ba673b9d7d18391 328 SMART SM00382 29 212 2.7E-19 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03914 c246f6ee0243b3741ba673b9d7d18391 328 Gene3D G3DSA:3.40.50.300 2 239 9.8E-76 T 12-10-2018 AMJ96_CH03914 c246f6ee0243b3741ba673b9d7d18391 328 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02368 4ce87661f21c5272c83f26170940f7a4 426 Pfam PF07690 Major Facilitator Superfamily 29 372 2.2E-38 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH02368 4ce87661f21c5272c83f26170940f7a4 426 Gene3D G3DSA:1.20.1720.10 24 404 5.9E-85 T 12-10-2018 AMJ96_CH02368 4ce87661f21c5272c83f26170940f7a4 426 SUPERFAMILY SSF103473 20 403 6.41E-54 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_PA00101 f1805a10ac91cbc7fdd971391b1fa842 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 304 1.0E-28 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PA00101 f1805a10ac91cbc7fdd971391b1fa842 306 SUPERFAMILY SSF161098 90 290 3.49E-12 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00101 f1805a10ac91cbc7fdd971391b1fa842 306 Gene3D G3DSA:1.10.3720.10 85 300 1.1E-17 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PB00047 e2d7766293426aec7a7075e2d82a63cd 225 Gene3D G3DSA:3.40.50.2300 1 121 1.4E-20 T 12-10-2018 AMJ96_PB00047 e2d7766293426aec7a7075e2d82a63cd 225 SUPERFAMILY SSF52172 4 119 6.83E-21 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PB00047 e2d7766293426aec7a7075e2d82a63cd 225 SMART SM00448 1 98 0.0014 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PB00047 e2d7766293426aec7a7075e2d82a63cd 225 Pfam PF00072 Response regulator receiver domain 6 98 1.6E-10 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00858 2c068f7dc9a15ca34d0a92f09d4a4003 186 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 119 125 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMJ96_CH00858 2c068f7dc9a15ca34d0a92f09d4a4003 186 Pfam PF03602 Conserved hypothetical protein 95 1 181 1.9E-47 T 12-10-2018 AMJ96_CH00858 2c068f7dc9a15ca34d0a92f09d4a4003 186 Gene3D G3DSA:3.40.50.150 1 186 1.2E-49 T 12-10-2018 AMJ96_CH00858 2c068f7dc9a15ca34d0a92f09d4a4003 186 PIRSF PIRSF004553 1 185 1.3E-47 T 12-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 AMJ96_CH00858 2c068f7dc9a15ca34d0a92f09d4a4003 186 SUPERFAMILY SSF53335 1 182 6.31E-41 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH00858 2c068f7dc9a15ca34d0a92f09d4a4003 186 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 2 182 2.5E-37 T 12-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 AMJ96_CH01454 7e0b035959364239d252a19debc94b45 254 Gene3D G3DSA:3.90.1680.10 1 236 3.1E-63 T 12-10-2018 IPR036590 SOS response associated peptidase-like AMJ96_CH01454 7e0b035959364239d252a19debc94b45 254 Pfam PF02586 SOS response associated peptidase (SRAP) 1 221 1.0E-59 T 12-10-2018 IPR003738 SOS response associated peptidase (SRAP) AMJ96_CH01454 7e0b035959364239d252a19debc94b45 254 SUPERFAMILY SSF143081 2 232 7.33E-68 T 12-10-2018 IPR036590 SOS response associated peptidase-like AMJ96_PC00306 1e19d42461dd0690ef2734f06a79f56e 289 SUPERFAMILY SSF88946 8 87 7.85E-15 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_PC00306 1e19d42461dd0690ef2734f06a79f56e 289 Gene3D G3DSA:1.10.10.10 87 163 9.4E-9 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00306 1e19d42461dd0690ef2734f06a79f56e 289 Gene3D G3DSA:3.10.450.50 172 280 2.3E-8 T 12-10-2018 AMJ96_PC00306 1e19d42461dd0690ef2734f06a79f56e 289 Pfam PF04542 Sigma-70 region 2 11 74 2.1E-14 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_PC00306 1e19d42461dd0690ef2734f06a79f56e 289 Gene3D G3DSA:1.10.1740.10 3 78 2.3E-9 T 12-10-2018 AMJ96_PC00306 1e19d42461dd0690ef2734f06a79f56e 289 SUPERFAMILY SSF88659 102 161 1.23E-9 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_PC00306 1e19d42461dd0690ef2734f06a79f56e 289 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 8 161 1.9E-18 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMJ96_PC00306 1e19d42461dd0690ef2734f06a79f56e 289 SUPERFAMILY SSF54427 175 282 4.5E-14 T 12-10-2018 IPR032710 NTF2-like domain superfamily AMJ96_PC00306 1e19d42461dd0690ef2734f06a79f56e 289 Pfam PF08281 Sigma-70, region 4 109 159 6.8E-10 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_PB00030 dcbaa0d39912eac81bc61135f6dce389 470 SUPERFAMILY SSF51905 22 319 2.23E-32 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PB00030 dcbaa0d39912eac81bc61135f6dce389 470 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 22 339 4.5E-52 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_PB00030 dcbaa0d39912eac81bc61135f6dce389 470 Gene3D G3DSA:3.50.50.100 19 412 7.1E-114 T 12-10-2018 AMJ96_PB00030 dcbaa0d39912eac81bc61135f6dce389 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 175 193 2.7E-12 T 12-10-2018 AMJ96_PB00030 dcbaa0d39912eac81bc61135f6dce389 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 22 41 2.7E-12 T 12-10-2018 AMJ96_PB00030 dcbaa0d39912eac81bc61135f6dce389 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 115 133 2.7E-12 T 12-10-2018 AMJ96_PB00030 dcbaa0d39912eac81bc61135f6dce389 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 296 318 2.7E-12 T 12-10-2018 AMJ96_PB00030 dcbaa0d39912eac81bc61135f6dce389 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 311 318 5.8E-10 T 12-10-2018 AMJ96_PB00030 dcbaa0d39912eac81bc61135f6dce389 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 175 200 5.8E-10 T 12-10-2018 AMJ96_PB00030 dcbaa0d39912eac81bc61135f6dce389 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 21 43 5.8E-10 T 12-10-2018 AMJ96_CH02890 784d1ec4519d59b3d2ea4f5722b5b6c7 255 Pfam PF12697 Alpha/beta hydrolase family 28 248 5.3E-19 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH02890 784d1ec4519d59b3d2ea4f5722b5b6c7 255 Gene3D G3DSA:3.40.50.1820 19 255 3.1E-49 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02890 784d1ec4519d59b3d2ea4f5722b5b6c7 255 SUPERFAMILY SSF53474 22 252 2.86E-36 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01888 8b9d4eed36ab3133fe45831ee33beaf9 285 Gene3D G3DSA:1.10.600.10 2 257 5.9E-27 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMJ96_CH01888 8b9d4eed36ab3133fe45831ee33beaf9 285 SUPERFAMILY SSF48576 9 283 9.21E-51 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMJ96_CH01888 8b9d4eed36ab3133fe45831ee33beaf9 285 Pfam PF00494 Squalene/phytoene synthase 17 271 1.2E-44 T 12-10-2018 AMJ96_CH01566 eedb0b3d5d73a5046005e95c7b0e1d79 323 SUPERFAMILY SSF53901 8 323 5.77E-74 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH01566 eedb0b3d5d73a5046005e95c7b0e1d79 323 Gene3D G3DSA:3.40.47.10 2 323 6.3E-127 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH01566 eedb0b3d5d73a5046005e95c7b0e1d79 323 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 5 323 1.1E-119 T 12-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AMJ96_CH01566 eedb0b3d5d73a5046005e95c7b0e1d79 323 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 236 323 2.7E-35 T 12-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AMJ96_CH01566 eedb0b3d5d73a5046005e95c7b0e1d79 323 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 2 323 70.22 T 12-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AMJ96_CH01566 eedb0b3d5d73a5046005e95c7b0e1d79 323 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 107 190 6.2E-33 T 12-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AMJ96_CH00729 43511ca39f4cbd9ee6a86ac0f6b0ca45 250 Pfam PF01311 Bacterial export proteins, family 1 10 244 5.0E-52 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AMJ96_CH00729 43511ca39f4cbd9ee6a86ac0f6b0ca45 250 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 10 244 6.8E-51 T 12-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 AMJ96_CH00729 43511ca39f4cbd9ee6a86ac0f6b0ca45 250 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 18 39 4.9E-13 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AMJ96_CH00729 43511ca39f4cbd9ee6a86ac0f6b0ca45 250 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 79 98 4.9E-13 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AMJ96_CH00729 43511ca39f4cbd9ee6a86ac0f6b0ca45 250 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 179 201 4.9E-13 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AMJ96_CH00729 43511ca39f4cbd9ee6a86ac0f6b0ca45 250 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 201 220 4.9E-13 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AMJ96_PC00352 2fe57acd807b340791d806873b4d4552 211 Gene3D G3DSA:3.20.20.70 1 207 1.7E-65 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_PC00352 2fe57acd807b340791d806873b4d4552 211 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 7 201 7.6E-58 T 12-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMJ96_PC00352 2fe57acd807b340791d806873b4d4552 211 Pfam PF02581 Thiamine monophosphate synthase 8 189 2.5E-56 T 12-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMJ96_PC00352 2fe57acd807b340791d806873b4d4552 211 SUPERFAMILY SSF51391 4 203 3.79E-59 T 12-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMJ96_PC00352 2fe57acd807b340791d806873b4d4552 211 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 6 207 25.463 T 12-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AMJ96_CH01414 24c7efbf9300eb5b670f54a5bd370cc4 438 Gene3D G3DSA:3.10.560.10 125 169 2.9E-11 T 12-10-2018 AMJ96_CH01414 24c7efbf9300eb5b670f54a5bd370cc4 438 Gene3D G3DSA:3.30.1950.10 69 124 2.9E-11 T 12-10-2018 AMJ96_CH01414 24c7efbf9300eb5b670f54a5bd370cc4 438 Pfam PF02563 Polysaccharide biosynthesis/export protein 67 120 1.0E-6 T 12-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 AMJ96_CH02014 d6d7b1efda7bd746136218f284859c24 406 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 113 120 - T 12-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AMJ96_CH02014 d6d7b1efda7bd746136218f284859c24 406 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 11 238 37.433 T 12-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AMJ96_CH02014 d6d7b1efda7bd746136218f284859c24 406 Gene3D G3DSA:3.90.550.10 13 243 2.1E-69 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH02014 d6d7b1efda7bd746136218f284859c24 406 SUPERFAMILY SSF53448 14 236 1.91E-54 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH02014 d6d7b1efda7bd746136218f284859c24 406 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 246 401 31.478 T 12-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMJ96_CH02014 d6d7b1efda7bd746136218f284859c24 406 Gene3D G3DSA:3.30.1330.50 245 404 2.7E-62 T 12-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMJ96_CH02014 d6d7b1efda7bd746136218f284859c24 406 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 247 400 2.9E-57 T 12-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMJ96_CH02014 d6d7b1efda7bd746136218f284859c24 406 SUPERFAMILY SSF69765 246 402 1.44E-60 T 12-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMJ96_CH02014 d6d7b1efda7bd746136218f284859c24 406 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 14 236 1.8E-62 T 12-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AMJ96_CH02014 d6d7b1efda7bd746136218f284859c24 406 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 14 236 2.4E-70 T 12-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AMJ96_CH02014 d6d7b1efda7bd746136218f284859c24 406 Hamap MF_01520 Bifunctional enzyme IspD/IspF [ispDF]. 10 402 43.847 T 12-10-2018 IPR026596 Bifunctional enzyme IspD/IspF KEGG: 00900+4.6.1.12+2.7.7.60|MetaCyc: PWY-7560 AMJ96_CH02014 d6d7b1efda7bd746136218f284859c24 406 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 280 295 - T 12-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMJ96_CH02014 d6d7b1efda7bd746136218f284859c24 406 Pfam PF02542 YgbB family 247 399 3.0E-57 T 12-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AMJ96_PD00003 ddab05f0b7f5eb86491d8f2db2eb71a4 273 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 10 269 39.859 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMJ96_PD00003 ddab05f0b7f5eb86491d8f2db2eb71a4 273 PIRSF PIRSF000388 1 272 6.7E-105 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMJ96_PD00003 ddab05f0b7f5eb86491d8f2db2eb71a4 273 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 15 270 1.0E-93 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMJ96_PD00003 ddab05f0b7f5eb86491d8f2db2eb71a4 273 Gene3D G3DSA:3.20.20.60 8 273 5.7E-101 T 12-10-2018 AMJ96_PD00003 ddab05f0b7f5eb86491d8f2db2eb71a4 273 SUPERFAMILY SSF51621 10 269 6.28E-98 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMJ96_PD00003 ddab05f0b7f5eb86491d8f2db2eb71a4 273 Pfam PF02548 Ketopantoate hydroxymethyltransferase 10 264 1.2E-104 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMJ96_PB00362 0911a2563d4add593e5f0b2b79130966 219 Gene3D G3DSA:3.20.20.370 5 218 2.2E-63 T 12-10-2018 AMJ96_PB00362 0911a2563d4add593e5f0b2b79130966 219 Pfam PF01522 Polysaccharide deacetylase 17 138 1.4E-34 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMJ96_PB00362 0911a2563d4add593e5f0b2b79130966 219 TIGRFAM TIGR04243 nodulat_NodB: chitooligosaccharide deacetylase NodB 21 215 3.3E-96 T 12-10-2018 IPR026402 Chitooligosaccharide deacetylase NodB AMJ96_PB00362 0911a2563d4add593e5f0b2b79130966 219 SUPERFAMILY SSF88713 17 215 9.45E-60 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMJ96_CH03246 cd46b9fa186045a8d138eb872f6c5845 105 Gene3D G3DSA:1.10.10.10 2 96 5.9E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03246 cd46b9fa186045a8d138eb872f6c5845 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 64 79 9.6E-9 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH03246 cd46b9fa186045a8d138eb872f6c5845 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 49 64 9.6E-9 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH03246 cd46b9fa186045a8d138eb872f6c5845 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 17 32 9.6E-9 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH03246 cd46b9fa186045a8d138eb872f6c5845 105 SMART SM00418 15 93 4.6E-28 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH03246 cd46b9fa186045a8d138eb872f6c5845 105 SUPERFAMILY SSF46785 9 94 7.39E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03246 cd46b9fa186045a8d138eb872f6c5845 105 Pfam PF01022 Bacterial regulatory protein, arsR family 22 67 1.4E-13 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_PC00214 94b75ec1182219dd5fbbe3660f15fec4 264 Gene3D G3DSA:3.40.50.720 12 263 5.3E-75 T 12-10-2018 AMJ96_PC00214 94b75ec1182219dd5fbbe3660f15fec4 264 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 156 184 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_PC00214 94b75ec1182219dd5fbbe3660f15fec4 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 3.4E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00214 94b75ec1182219dd5fbbe3660f15fec4 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 3.4E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00214 94b75ec1182219dd5fbbe3660f15fec4 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 3.4E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00214 94b75ec1182219dd5fbbe3660f15fec4 264 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 19 195 6.5E-4 T 12-10-2018 AMJ96_PC00214 94b75ec1182219dd5fbbe3660f15fec4 264 SUPERFAMILY SSF51735 18 263 9.86E-75 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00214 94b75ec1182219dd5fbbe3660f15fec4 264 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 25 260 1.8E-58 T 12-10-2018 AMJ96_PC00214 94b75ec1182219dd5fbbe3660f15fec4 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 224 244 1.5E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00214 94b75ec1182219dd5fbbe3660f15fec4 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 188 1.5E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00214 94b75ec1182219dd5fbbe3660f15fec4 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 158 1.5E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00214 94b75ec1182219dd5fbbe3660f15fec4 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 20 37 1.5E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00214 94b75ec1182219dd5fbbe3660f15fec4 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 95 106 1.5E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00214 94b75ec1182219dd5fbbe3660f15fec4 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 190 207 1.5E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00404 4bc98a807d8a4010c997fae72d8bfbe2 526 Pfam PF03023 MviN-like protein 28 474 4.2E-118 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMJ96_CH00404 4bc98a807d8a4010c997fae72d8bfbe2 526 PIRSF PIRSF002869 1 518 7.4E-144 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMJ96_CH00404 4bc98a807d8a4010c997fae72d8bfbe2 526 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 3 470 18.827 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMJ96_CH00404 4bc98a807d8a4010c997fae72d8bfbe2 526 PRINTS PR01806 Virulence factor MviN signature 158 179 3.1E-74 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMJ96_CH00404 4bc98a807d8a4010c997fae72d8bfbe2 526 PRINTS PR01806 Virulence factor MviN signature 360 379 3.1E-74 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMJ96_CH00404 4bc98a807d8a4010c997fae72d8bfbe2 526 PRINTS PR01806 Virulence factor MviN signature 262 288 3.1E-74 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMJ96_CH00404 4bc98a807d8a4010c997fae72d8bfbe2 526 PRINTS PR01806 Virulence factor MviN signature 412 429 3.1E-74 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMJ96_CH00404 4bc98a807d8a4010c997fae72d8bfbe2 526 PRINTS PR01806 Virulence factor MviN signature 134 158 3.1E-74 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMJ96_CH00404 4bc98a807d8a4010c997fae72d8bfbe2 526 PRINTS PR01806 Virulence factor MviN signature 52 68 3.1E-74 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMJ96_CH00404 4bc98a807d8a4010c997fae72d8bfbe2 526 PRINTS PR01806 Virulence factor MviN signature 33 52 3.1E-74 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMJ96_CH00404 4bc98a807d8a4010c997fae72d8bfbe2 526 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 2 514 8.4E-145 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AMJ96_CH00221 62f40cc0ae0a5f26ae75175201ddcf5c 285 Gene3D G3DSA:3.90.1720.10 152 270 7.7E-25 T 12-10-2018 AMJ96_CH00221 62f40cc0ae0a5f26ae75175201ddcf5c 285 Gene3D G3DSA:2.30.30.40 28 95 7.9E-7 T 12-10-2018 AMJ96_CH00221 62f40cc0ae0a5f26ae75175201ddcf5c 285 SUPERFAMILY SSF54001 162 284 2.29E-33 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMJ96_CH00221 62f40cc0ae0a5f26ae75175201ddcf5c 285 Pfam PF00877 NlpC/P60 family 178 259 1.7E-17 T 12-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain AMJ96_PA00189 6021aa00fe0b93e01d9659d3a38f3d0e 275 Gene3D G3DSA:1.10.3720.10 58 267 1.5E-17 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00189 6021aa00fe0b93e01d9659d3a38f3d0e 275 SUPERFAMILY SSF161098 64 264 4.19E-21 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00189 6021aa00fe0b93e01d9659d3a38f3d0e 275 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 9 35 3.4E-5 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMJ96_PA00189 6021aa00fe0b93e01d9659d3a38f3d0e 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 264 6.3E-25 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00042 9d055186aea3c119661d7766a8894fb6 262 Pfam PF00977 Histidine biosynthesis protein 6 244 1.1E-88 T 12-10-2018 IPR006062 Histidine biosynthesis GO:0000105 AMJ96_CH00042 9d055186aea3c119661d7766a8894fb6 262 SUPERFAMILY SSF51366 4 260 2.83E-82 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 AMJ96_CH00042 9d055186aea3c119661d7766a8894fb6 262 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 3 260 5.2E-105 T 12-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 AMJ96_CH00042 9d055186aea3c119661d7766a8894fb6 262 Gene3D G3DSA:3.20.20.70 1 262 6.2E-106 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH00042 9d055186aea3c119661d7766a8894fb6 262 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 2 260 45.983 T 12-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 AMJ96_CH00143 43ca40b84d4ef3dd4b4f2e3fc8c195e4 333 Gene3D G3DSA:3.40.50.720 9 299 2.7E-105 T 12-10-2018 AMJ96_CH00143 43ca40b84d4ef3dd4b4f2e3fc8c195e4 333 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 114 298 2.5E-55 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMJ96_CH00143 43ca40b84d4ef3dd4b4f2e3fc8c195e4 333 SUPERFAMILY SSF51735 106 299 2.68E-56 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00143 43ca40b84d4ef3dd4b4f2e3fc8c195e4 333 Gene3D G3DSA:3.40.50.720 106 294 2.7E-105 T 12-10-2018 AMJ96_CH00143 43ca40b84d4ef3dd4b4f2e3fc8c195e4 333 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 235 251 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMJ96_CH00143 43ca40b84d4ef3dd4b4f2e3fc8c195e4 333 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 156 183 - T 12-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AMJ96_CH00143 43ca40b84d4ef3dd4b4f2e3fc8c195e4 333 SUPERFAMILY SSF52283 6 141 1.19E-34 T 12-10-2018 AMJ96_CH00143 43ca40b84d4ef3dd4b4f2e3fc8c195e4 333 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 18 329 1.2E-31 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AMJ96_CH03063 b8d8057df36eba86de2d71fae7a42438 262 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 252 2.3E-7 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03063 b8d8057df36eba86de2d71fae7a42438 262 Gene3D G3DSA:1.10.3720.10 4 256 5.5E-35 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03063 b8d8057df36eba86de2d71fae7a42438 262 SUPERFAMILY SSF161098 4 253 2.09E-33 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00379 d4ceb6f1967cc4dc8a6b081f7db33d1a 211 Gene3D G3DSA:3.90.20.20 28 135 2.0E-27 T 12-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 AMJ96_CH00379 d4ceb6f1967cc4dc8a6b081f7db33d1a 211 ProSitePatterns PS01071 grpE protein signature. 147 190 - T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMJ96_CH00379 d4ceb6f1967cc4dc8a6b081f7db33d1a 211 Hamap MF_01151 Protein GrpE [grpE]. 2 192 19.967 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMJ96_CH00379 d4ceb6f1967cc4dc8a6b081f7db33d1a 211 Pfam PF01025 GrpE 32 192 3.6E-54 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMJ96_CH00379 d4ceb6f1967cc4dc8a6b081f7db33d1a 211 PRINTS PR00773 GrpE protein signature 84 99 4.1E-27 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMJ96_CH00379 d4ceb6f1967cc4dc8a6b081f7db33d1a 211 PRINTS PR00773 GrpE protein signature 56 72 4.1E-27 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMJ96_CH00379 d4ceb6f1967cc4dc8a6b081f7db33d1a 211 PRINTS PR00773 GrpE protein signature 144 159 4.1E-27 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMJ96_CH00379 d4ceb6f1967cc4dc8a6b081f7db33d1a 211 PRINTS PR00773 GrpE protein signature 171 190 4.1E-27 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AMJ96_CH00379 d4ceb6f1967cc4dc8a6b081f7db33d1a 211 SUPERFAMILY SSF51064 138 193 4.45E-20 T 12-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 AMJ96_CH00379 d4ceb6f1967cc4dc8a6b081f7db33d1a 211 SUPERFAMILY SSF58014 40 136 5.62E-26 T 12-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 AMJ96_CH00379 d4ceb6f1967cc4dc8a6b081f7db33d1a 211 Gene3D G3DSA:2.30.22.10 136 192 8.7E-24 T 12-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 AMJ96_CH00527 79980c98f3f6049798b96495ece7185e 440 Gene3D G3DSA:1.10.3720.10 216 440 2.3E-33 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00527 79980c98f3f6049798b96495ece7185e 440 SUPERFAMILY SSF161098 216 426 5.36E-35 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00527 79980c98f3f6049798b96495ece7185e 440 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 198 437 1.4E-66 T 12-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 AMJ96_CH00527 79980c98f3f6049798b96495ece7185e 440 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 240 439 2.4E-22 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00527 79980c98f3f6049798b96495ece7185e 440 Pfam PF11812 Domain of unknown function (DUF3333) 23 173 6.3E-54 T 12-10-2018 IPR024573 Domain of unknown function DUF3333 AMJ96_CH02727 fe8e364d15166c333b34b8e212634a10 318 SUPERFAMILY SSF50156 192 302 3.15E-14 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 AMJ96_CH02727 fe8e364d15166c333b34b8e212634a10 318 Pfam PF13180 PDZ domain 244 298 5.0E-9 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH02727 fe8e364d15166c333b34b8e212634a10 318 Pfam PF13365 Trypsin-like peptidase domain 48 184 1.7E-30 T 12-10-2018 AMJ96_CH02727 fe8e364d15166c333b34b8e212634a10 318 SMART SM00228 220 304 7.7E-6 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH02727 fe8e364d15166c333b34b8e212634a10 318 Gene3D G3DSA:2.40.10.120 12 216 3.7E-59 T 12-10-2018 AMJ96_CH02727 fe8e364d15166c333b34b8e212634a10 318 SUPERFAMILY SSF50494 21 216 2.31E-50 T 12-10-2018 IPR009003 Peptidase S1, PA clan AMJ96_CH02727 fe8e364d15166c333b34b8e212634a10 318 PRINTS PR00834 HtrA/DegQ protease family signature 57 69 1.1E-42 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH02727 fe8e364d15166c333b34b8e212634a10 318 PRINTS PR00834 HtrA/DegQ protease family signature 78 98 1.1E-42 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH02727 fe8e364d15166c333b34b8e212634a10 318 PRINTS PR00834 HtrA/DegQ protease family signature 262 274 1.1E-42 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH02727 fe8e364d15166c333b34b8e212634a10 318 PRINTS PR00834 HtrA/DegQ protease family signature 177 194 1.1E-42 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH02727 fe8e364d15166c333b34b8e212634a10 318 PRINTS PR00834 HtrA/DegQ protease family signature 118 142 1.1E-42 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH02727 fe8e364d15166c333b34b8e212634a10 318 PRINTS PR00834 HtrA/DegQ protease family signature 155 172 1.1E-42 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH02727 fe8e364d15166c333b34b8e212634a10 318 Gene3D G3DSA:2.30.42.10 217 313 3.2E-15 T 12-10-2018 AMJ96_CH01372 df746e32ffd9bccb0a025ee772d87ad2 145 Gene3D G3DSA:3.10.180.10 1 145 4.7E-64 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01372 df746e32ffd9bccb0a025ee772d87ad2 145 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 121 2.1E-11 T 12-10-2018 AMJ96_CH01372 df746e32ffd9bccb0a025ee772d87ad2 145 SUPERFAMILY SSF54593 3 142 2.06E-36 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH04004 1f268352842819dcf71fe9b0e43cdc31 258 SUPERFAMILY SSF53271 83 252 6.95E-30 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like AMJ96_CH04004 1f268352842819dcf71fe9b0e43cdc31 258 Gene3D G3DSA:3.40.50.2020 140 256 1.2E-18 T 12-10-2018 AMJ96_CH04004 1f268352842819dcf71fe9b0e43cdc31 258 Pfam PF00156 Phosphoribosyl transferase domain 207 251 6.0E-7 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMJ96_PD00396 ae71b774eaadd890dfd702ffce9e88b2 714 SMART SM00283 451 698 3.2E-102 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_PD00396 ae71b774eaadd890dfd702ffce9e88b2 714 Gene3D G3DSA:1.10.287.950 401 699 1.7E-73 T 12-10-2018 AMJ96_PD00396 ae71b774eaadd890dfd702ffce9e88b2 714 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 549 576 7.9E-41 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_PD00396 ae71b774eaadd890dfd702ffce9e88b2 714 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 472 501 7.9E-41 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_PD00396 ae71b774eaadd890dfd702ffce9e88b2 714 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 578 607 7.9E-41 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_PD00396 ae71b774eaadd890dfd702ffce9e88b2 714 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 246 261 7.9E-41 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_PD00396 ae71b774eaadd890dfd702ffce9e88b2 714 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 626 655 7.9E-41 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_PD00396 ae71b774eaadd890dfd702ffce9e88b2 714 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 512 666 2.5E-47 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_PD00396 ae71b774eaadd890dfd702ffce9e88b2 714 SMART SM01358 40 289 2.8E-26 T 12-10-2018 IPR032255 Helical bimodular sensor domain AMJ96_PD00396 ae71b774eaadd890dfd702ffce9e88b2 714 Gene3D G3DSA:1.20.1480.50 279 376 1.0E-8 T 12-10-2018 AMJ96_PD00396 ae71b774eaadd890dfd702ffce9e88b2 714 SUPERFAMILY SSF58104 436 699 6.67E-64 T 12-10-2018 AMJ96_CH01504 1fd3b505f28ed216200e17dfe294fa7b 362 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 5 359 1.6E-78 T 12-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 AMJ96_CH01504 1fd3b505f28ed216200e17dfe294fa7b 362 Pfam PF03739 Predicted permease YjgP/YjgQ family 8 357 2.4E-50 T 12-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 AMJ96_CH02802 5a01e0d5c80e0d98b70cef8f4a41dff4 103 SUPERFAMILY SSF50022 1 102 1.22E-27 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMJ96_CH02802 5a01e0d5c80e0d98b70cef8f4a41dff4 103 TIGRFAM TIGR02377 MocE_fam_FeS: Rieske [2Fe-2S] domain protein, MocE subfamily 2 102 9.5E-56 T 12-10-2018 IPR012747 MocE Rieske [2Fe-2S] AMJ96_CH02802 5a01e0d5c80e0d98b70cef8f4a41dff4 103 Gene3D G3DSA:2.102.10.10 1 102 4.4E-27 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMJ96_CH02802 5a01e0d5c80e0d98b70cef8f4a41dff4 103 Pfam PF00355 Rieske [2Fe-2S] domain 2 90 7.6E-18 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMJ96_CH02052 0be6d7e8abc05d3feb3e712d0330623e 556 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 412 527 3.8E-10 T 12-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMJ96_CH02052 0be6d7e8abc05d3feb3e712d0330623e 556 Gene3D G3DSA:3.30.413.10 408 555 1.6E-27 T 12-10-2018 AMJ96_CH02052 0be6d7e8abc05d3feb3e712d0330623e 556 SUPERFAMILY SSF56014 120 282 4.58E-49 T 12-10-2018 AMJ96_CH02052 0be6d7e8abc05d3feb3e712d0330623e 556 SUPERFAMILY SSF56014 407 549 8.24E-34 T 12-10-2018 AMJ96_CH02052 0be6d7e8abc05d3feb3e712d0330623e 556 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 119 271 1.6E-43 T 12-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMJ96_CH02052 0be6d7e8abc05d3feb3e712d0330623e 556 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 328 397 1.1E-14 T 12-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMJ96_CH02052 0be6d7e8abc05d3feb3e712d0330623e 556 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 52 110 3.0E-16 T 12-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMJ96_CH02052 0be6d7e8abc05d3feb3e712d0330623e 556 SUPERFAMILY SSF55124 1 126 1.49E-31 T 12-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMJ96_CH02052 0be6d7e8abc05d3feb3e712d0330623e 556 SUPERFAMILY SSF55124 252 421 1.21E-24 T 12-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AMJ96_PB00024 45033838019c22bd6e2d3bc4eaee18ae 603 Gene3D G3DSA:3.40.50.300 179 373 3.5E-9 T 12-10-2018 AMJ96_PB00024 45033838019c22bd6e2d3bc4eaee18ae 603 Gene3D G3DSA:3.40.50.300 2 107 1.7E-11 T 12-10-2018 AMJ96_PB00024 45033838019c22bd6e2d3bc4eaee18ae 603 SUPERFAMILY SSF52540 4 362 1.83E-21 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PB00024 45033838019c22bd6e2d3bc4eaee18ae 603 Pfam PF13175 AAA ATPase domain 5 81 2.8E-12 T 12-10-2018 AMJ96_PB00024 45033838019c22bd6e2d3bc4eaee18ae 603 Pfam PF13175 AAA ATPase domain 176 352 1.8E-21 T 12-10-2018 AMJ96_CH00927 70ae94c365267dc10419f42255183ea0 250 SUPERFAMILY SSF52096 2 249 3.45E-62 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_CH00927 70ae94c365267dc10419f42255183ea0 250 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 248 9.5E-46 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMJ96_CH00927 70ae94c365267dc10419f42255183ea0 250 Gene3D G3DSA:3.90.226.10 9 250 3.4E-56 T 12-10-2018 AMJ96_PC00102 501e0778a3318e5a1ea373f6e2faff5c 353 Gene3D G3DSA:1.10.10.10 20 100 2.8E-7 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00102 501e0778a3318e5a1ea373f6e2faff5c 353 Pfam PF13847 Methyltransferase domain 172 297 2.7E-18 T 12-10-2018 IPR025714 Methyltransferase domain AMJ96_PC00102 501e0778a3318e5a1ea373f6e2faff5c 353 SUPERFAMILY SSF53335 131 341 3.72E-32 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_PC00102 501e0778a3318e5a1ea373f6e2faff5c 353 SUPERFAMILY SSF46785 29 95 5.85E-8 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00102 501e0778a3318e5a1ea373f6e2faff5c 353 Gene3D G3DSA:3.40.50.150 101 346 6.3E-34 T 12-10-2018 AMJ96_PB00377 b9fe725298ad3661114b283051705711 540 Gene3D G3DSA:1.20.210.10 60 529 1.4E-191 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PB00377 b9fe725298ad3661114b283051705711 540 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 73 501 2.1E-116 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PB00377 b9fe725298ad3661114b283051705711 540 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 70 523 8.7E-239 T 12-10-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 AMJ96_PB00377 b9fe725298ad3661114b283051705711 540 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 262 317 - T 12-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PB00377 b9fe725298ad3661114b283051705711 540 SUPERFAMILY SSF81442 71 521 6.54E-122 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH03314 baf54bf6fd4e8d5e8230957ab1af6d8b 274 SMART SM00460 157 221 1.2E-16 T 12-10-2018 IPR002931 Transglutaminase-like AMJ96_CH03314 baf54bf6fd4e8d5e8230957ab1af6d8b 274 SUPERFAMILY SSF54001 7 248 9.95E-45 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMJ96_CH03314 baf54bf6fd4e8d5e8230957ab1af6d8b 274 Pfam PF01841 Transglutaminase-like superfamily 123 219 6.7E-28 T 12-10-2018 IPR002931 Transglutaminase-like AMJ96_CH03314 baf54bf6fd4e8d5e8230957ab1af6d8b 274 Gene3D G3DSA:3.10.620.30 98 252 7.2E-46 T 12-10-2018 AMJ96_CH03314 baf54bf6fd4e8d5e8230957ab1af6d8b 274 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 81 5.9E-19 T 12-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal AMJ96_PA00159 a6c2a754a3b0eec18f3c895b61807276 308 Gene3D G3DSA:3.40.1190.20 1 306 7.5E-89 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_PA00159 a6c2a754a3b0eec18f3c895b61807276 308 Pfam PF00294 pfkB family carbohydrate kinase 7 298 1.7E-61 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB AMJ96_PA00159 a6c2a754a3b0eec18f3c895b61807276 308 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 250 263 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMJ96_PA00159 a6c2a754a3b0eec18f3c895b61807276 308 SUPERFAMILY SSF53613 5 301 4.52E-75 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_PA00159 a6c2a754a3b0eec18f3c895b61807276 308 Hamap MF_01987 Ribokinase [rbsK]. 5 305 24.509 T 12-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 AMJ96_PA00159 a6c2a754a3b0eec18f3c895b61807276 308 PRINTS PR00990 Ribokinase signature 36 55 3.0E-25 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AMJ96_PA00159 a6c2a754a3b0eec18f3c895b61807276 308 PRINTS PR00990 Ribokinase signature 108 121 3.0E-25 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AMJ96_PA00159 a6c2a754a3b0eec18f3c895b61807276 308 PRINTS PR00990 Ribokinase signature 220 231 3.0E-25 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AMJ96_PA00159 a6c2a754a3b0eec18f3c895b61807276 308 PRINTS PR00990 Ribokinase signature 176 191 3.0E-25 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AMJ96_PA00159 a6c2a754a3b0eec18f3c895b61807276 308 PRINTS PR00990 Ribokinase signature 9 30 3.0E-25 T 12-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AMJ96_CH03463 7bb916f12ed5b315cb215e792c909b87 104 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 80 4.2E-20 T 12-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AMJ96_CH03463 7bb916f12ed5b315cb215e792c909b87 104 SUPERFAMILY SSF54909 1 101 4.95E-29 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH03463 7bb916f12ed5b315cb215e792c909b87 104 Gene3D G3DSA:3.30.70.100 1 103 5.5E-32 T 12-10-2018 AMJ96_PD00007 64430af1a381d966af469a63e1de6115 241 SUPERFAMILY SSF51735 3 229 3.85E-58 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00007 64430af1a381d966af469a63e1de6115 241 Pfam PF00106 short chain dehydrogenase 7 195 4.5E-46 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00007 64430af1a381d966af469a63e1de6115 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 9.5E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00007 64430af1a381d966af469a63e1de6115 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 9.5E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00007 64430af1a381d966af469a63e1de6115 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 9.5E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00007 64430af1a381d966af469a63e1de6115 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 9.5E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00007 64430af1a381d966af469a63e1de6115 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 223 9.5E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00007 64430af1a381d966af469a63e1de6115 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 9.5E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00007 64430af1a381d966af469a63e1de6115 241 Gene3D G3DSA:3.40.50.720 2 241 4.8E-63 T 12-10-2018 AMJ96_CH00666 bdbe7385aa665572822a357ff3395fe1 125 SUPERFAMILY SSF52172 1 121 5.55E-19 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH00666 bdbe7385aa665572822a357ff3395fe1 125 Gene3D G3DSA:3.40.50.2300 1 125 2.9E-20 T 12-10-2018 AMJ96_CH00666 bdbe7385aa665572822a357ff3395fe1 125 Pfam PF00072 Response regulator receiver domain 4 120 1.7E-12 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00666 bdbe7385aa665572822a357ff3395fe1 125 SMART SM00448 2 123 3.5E-11 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00311 a9fbf501ca119359057fc5c48b8ec0b7 320 Pfam PF13407 Periplasmic binding protein domain 36 286 8.0E-50 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_PD00311 a9fbf501ca119359057fc5c48b8ec0b7 320 Gene3D G3DSA:3.40.50.2300 133 264 6.8E-65 T 12-10-2018 AMJ96_PD00311 a9fbf501ca119359057fc5c48b8ec0b7 320 SUPERFAMILY SSF53822 31 310 3.53E-56 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PD00311 a9fbf501ca119359057fc5c48b8ec0b7 320 Gene3D G3DSA:3.40.50.2300 42 285 6.8E-65 T 12-10-2018 AMJ96_PC00380 ba667d8a3cbd0f2b815de67588752ec2 410 Gene3D G3DSA:2.40.50.100 42 75 1.5E-6 T 12-10-2018 AMJ96_PC00380 ba667d8a3cbd0f2b815de67588752ec2 410 Gene3D G3DSA:2.40.30.170 31 41 1.5E-6 T 12-10-2018 AMJ96_PC00380 ba667d8a3cbd0f2b815de67588752ec2 410 Gene3D G3DSA:2.40.30.170 297 340 1.1E-9 T 12-10-2018 AMJ96_PC00380 ba667d8a3cbd0f2b815de67588752ec2 410 Gene3D G3DSA:1.10.287.470 76 141 1.5E-6 T 12-10-2018 AMJ96_PC00380 ba667d8a3cbd0f2b815de67588752ec2 410 Pfam PF13437 HlyD family secretion protein 267 348 1.3E-8 T 12-10-2018 AMJ96_PC00380 ba667d8a3cbd0f2b815de67588752ec2 410 Gene3D G3DSA:2.40.50.100 253 296 1.1E-9 T 12-10-2018 AMJ96_PC00380 ba667d8a3cbd0f2b815de67588752ec2 410 Gene3D G3DSA:1.10.287.470 238 252 1.1E-9 T 12-10-2018 AMJ96_PC00380 ba667d8a3cbd0f2b815de67588752ec2 410 Gene3D G3DSA:2.40.420.20 20 30 1.5E-6 T 12-10-2018 AMJ96_PD00284 8683c3fec0ece4df60701866215f17fa 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 8 105 2.2E-26 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_PD00284 8683c3fec0ece4df60701866215f17fa 219 Gene3D G3DSA:1.10.3720.10 2 214 2.4E-48 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00284 8683c3fec0ece4df60701866215f17fa 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 30 211 8.3E-22 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00284 8683c3fec0ece4df60701866215f17fa 219 TIGRFAM TIGR03004 ectoine_ehuC: ectoine/hydroxyectoine ABC transporter, permease protein EhuC 5 217 1.1E-101 T 12-10-2018 IPR014342 Ectoine/hydroxyectoine ABC transporter, permease protein EhuC AMJ96_PD00284 8683c3fec0ece4df60701866215f17fa 219 SUPERFAMILY SSF161098 10 211 1.44E-41 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PB00427 89c9997a246261fbb5c5623808802e44 151 TIGRFAM TIGR01841 phasin: phasin family protein 74 146 3.8E-8 T 12-10-2018 IPR010127 Phasin, subfamily 1 AMJ96_PB00427 89c9997a246261fbb5c5623808802e44 151 Pfam PF09361 Phasin protein 69 140 2.7E-13 T 12-10-2018 IPR018968 Phasin AMJ96_PB00427 89c9997a246261fbb5c5623808802e44 151 TIGRFAM TIGR01985 phasin_2: phasin 21 143 1.9E-45 T 12-10-2018 IPR010234 Phasin, subfamily 2 AMJ96_CH03645 e8bbae2888fac8533635c62edcef2cd9 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 1.3E-5 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH03645 e8bbae2888fac8533635c62edcef2cd9 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 1.3E-5 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH03645 e8bbae2888fac8533635c62edcef2cd9 200 SUPERFAMILY SSF48498 85 196 4.34E-5 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH03645 e8bbae2888fac8533635c62edcef2cd9 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 3.0E-12 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH03645 e8bbae2888fac8533635c62edcef2cd9 200 SUPERFAMILY SSF46689 2 82 6.67E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03645 e8bbae2888fac8533635c62edcef2cd9 200 Gene3D G3DSA:1.10.357.10 4 193 5.0E-29 T 12-10-2018 AMJ96_CH03710 1f1e75694e762674f60bb632ba345a6a 274 PIRSF PIRSF004789 1 264 7.6E-84 T 12-10-2018 IPR005235 Metallophosphoesterase, YmdB-like AMJ96_CH03710 1f1e75694e762674f60bb632ba345a6a 274 Pfam PF13277 YmdB-like protein 4 258 5.4E-98 T 12-10-2018 IPR005235 Metallophosphoesterase, YmdB-like AMJ96_CH03710 1f1e75694e762674f60bb632ba345a6a 274 TIGRFAM TIGR00282 TIGR00282: metallophosphoesterase, MG_246/BB_0505 family 1 258 3.2E-76 T 12-10-2018 IPR005235 Metallophosphoesterase, YmdB-like AMJ96_CH03710 1f1e75694e762674f60bb632ba345a6a 274 Gene3D G3DSA:3.60.21.10 1 268 2.2E-98 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like AMJ96_CH03710 1f1e75694e762674f60bb632ba345a6a 274 SUPERFAMILY SSF56300 1 260 6.21E-79 T 12-10-2018 AMJ96_CH01918 3a5a0bd4a81e1445429dae1727a34d1c 671 Pfam PF15648 Restriction endonuclease fold toxin 5 548 629 2.6E-15 T 12-10-2018 IPR028904 Tox-REase-5 domain AMJ96_CH01918 3a5a0bd4a81e1445429dae1727a34d1c 671 Gene3D G3DSA:2.180.10.10 1 456 3.7E-42 T 12-10-2018 AMJ96_CH01918 3a5a0bd4a81e1445429dae1727a34d1c 671 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 380 457 1.5E-22 T 12-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 AMJ96_CH03906 5881f51b2d7d97745878df21f0a258ed 226 Gene3D G3DSA:1.10.357.10 83 220 3.7E-31 T 12-10-2018 AMJ96_CH03906 5881f51b2d7d97745878df21f0a258ed 226 ProSitePatterns PS01081 TetR-type HTH domain signature. 44 74 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AMJ96_CH03906 5881f51b2d7d97745878df21f0a258ed 226 SUPERFAMILY SSF48498 97 214 2.92E-5 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH03906 5881f51b2d7d97745878df21f0a258ed 226 Gene3D G3DSA:1.10.10.60 21 76 5.3E-19 T 12-10-2018 AMJ96_CH03906 5881f51b2d7d97745878df21f0a258ed 226 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 45 7.7E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH03906 5881f51b2d7d97745878df21f0a258ed 226 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 53 76 7.7E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH03906 5881f51b2d7d97745878df21f0a258ed 226 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 163 218 1.5E-19 T 12-10-2018 IPR039536 Transcriptional regulator TetR, C-terminal, Proteobacteria type AMJ96_CH03906 5881f51b2d7d97745878df21f0a258ed 226 SUPERFAMILY SSF46689 24 102 3.4E-21 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03906 5881f51b2d7d97745878df21f0a258ed 226 Pfam PF00440 Bacterial regulatory proteins, tetR family 32 78 1.0E-17 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH03674 1ba7ca6c1d05df7b652149ab7c6d2615 184 Gene3D G3DSA:3.40.50.1240 3 182 3.6E-35 T 12-10-2018 IPR029033 Histidine phosphatase superfamily AMJ96_CH03674 1ba7ca6c1d05df7b652149ab7c6d2615 184 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 8 181 1.4E-32 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMJ96_CH03674 1ba7ca6c1d05df7b652149ab7c6d2615 184 SUPERFAMILY SSF53254 4 181 1.28E-38 T 12-10-2018 IPR029033 Histidine phosphatase superfamily AMJ96_CH03674 1ba7ca6c1d05df7b652149ab7c6d2615 184 SMART SM00855 4 146 9.7E-15 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMJ96_CH03674 1ba7ca6c1d05df7b652149ab7c6d2615 184 PIRSF PIRSF000709 17 169 2.6E-5 T 12-10-2018 AMJ96_PB00352 39ff65a751b8f685af7bdbebd0678ba6 155 Gene3D G3DSA:3.40.50.150 2 141 3.4E-17 T 12-10-2018 AMJ96_PB00352 39ff65a751b8f685af7bdbebd0678ba6 155 Pfam PF05050 Methyltransferase FkbM domain 10 121 7.1E-12 T 12-10-2018 IPR006342 Methyltransferase FkbM AMJ96_PB00352 39ff65a751b8f685af7bdbebd0678ba6 155 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 8 113 1.9E-19 T 12-10-2018 IPR006342 Methyltransferase FkbM AMJ96_PB00352 39ff65a751b8f685af7bdbebd0678ba6 155 SUPERFAMILY SSF53335 6 134 2.08E-16 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH04162 1609fcc595531d8524c65404d61b8ae6 103 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 12 88 5.2E-24 T 12-10-2018 IPR003746 Protein of unknown function DUF167 AMJ96_CH04162 1609fcc595531d8524c65404d61b8ae6 103 SMART SM01152 8 89 1.5E-33 T 12-10-2018 IPR003746 Protein of unknown function DUF167 AMJ96_CH04162 1609fcc595531d8524c65404d61b8ae6 103 Hamap MF_00634 UPF0235 protein YggU [yggU]. 8 100 19.504 T 12-10-2018 IPR003746 Protein of unknown function DUF167 AMJ96_CH04162 1609fcc595531d8524c65404d61b8ae6 103 Gene3D G3DSA:3.30.1200.10 4 103 1.8E-25 T 12-10-2018 IPR036591 YggU-like superfamily AMJ96_CH04162 1609fcc595531d8524c65404d61b8ae6 103 SUPERFAMILY SSF69786 3 92 2.22E-22 T 12-10-2018 IPR036591 YggU-like superfamily AMJ96_CH01723 f3d1400c9853a94072fdbac80e5de59f 66 Pfam PF00831 Ribosomal L29 protein 4 60 4.1E-25 T 12-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01723 f3d1400c9853a94072fdbac80e5de59f 66 Gene3D G3DSA:1.10.287.310 1 62 5.5E-28 T 12-10-2018 AMJ96_CH01723 f3d1400c9853a94072fdbac80e5de59f 66 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 2.5E-23 T 12-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01723 f3d1400c9853a94072fdbac80e5de59f 66 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 12-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01723 f3d1400c9853a94072fdbac80e5de59f 66 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 18.538 T 12-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01723 f3d1400c9853a94072fdbac80e5de59f 66 SUPERFAMILY SSF46561 1 63 9.94E-23 T 12-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_PC00132 d218e19c3771a0c0ba72ddf5e1fb4173 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 269 8.2E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00132 d218e19c3771a0c0ba72ddf5e1fb4173 278 Gene3D G3DSA:1.10.3720.10 5 265 2.6E-49 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00132 d218e19c3771a0c0ba72ddf5e1fb4173 278 SUPERFAMILY SSF161098 9 278 1.4E-57 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH04241 6e66851ee45d53bee6f9d559854ae6f8 311 Gene3D G3DSA:1.10.3720.10 97 305 4.1E-23 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH04241 6e66851ee45d53bee6f9d559854ae6f8 311 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 36 84 7.0E-13 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMJ96_CH04241 6e66851ee45d53bee6f9d559854ae6f8 311 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 126 307 1.2E-30 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH04241 6e66851ee45d53bee6f9d559854ae6f8 311 SUPERFAMILY SSF161098 102 290 2.88E-29 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00130 75c6449ed25166e8723771cacba01abf 305 SUPERFAMILY SSF53850 7 251 1.09E-16 T 12-10-2018 AMJ96_PC00130 75c6449ed25166e8723771cacba01abf 305 Gene3D G3DSA:3.40.190.10 6 96 8.3E-10 T 12-10-2018 AMJ96_PC00130 75c6449ed25166e8723771cacba01abf 305 Gene3D G3DSA:3.40.190.10 125 292 1.4E-11 T 12-10-2018 AMJ96_PC00130 75c6449ed25166e8723771cacba01abf 305 Pfam PF09084 NMT1/THI5 like 14 223 3.9E-10 T 12-10-2018 IPR015168 SsuA/THI5-like AMJ96_CH00946 61159fd50eb1290e820ece5734b8dda3 128 Pfam PF06339 Ectoine synthase 1 124 1.6E-48 T 12-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 AMJ96_CH00946 61159fd50eb1290e820ece5734b8dda3 128 Hamap MF_01255 L-ectoine synthase [ectC]. 1 128 33.445 T 12-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 AMJ96_CH00946 61159fd50eb1290e820ece5734b8dda3 128 ProDom PD080544 SYNTHASE 4.2.1.- LYASE L-ECTOINE DEHYDRATASE N-ACETYLDIAMINOBUTYRATE ECTOINE ENZYME SYNTHASE:ECTOINE ECTC 1 128 4.0E-55 T 12-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 AMJ96_CH00946 61159fd50eb1290e820ece5734b8dda3 128 Gene3D G3DSA:2.60.120.10 1 116 5.9E-43 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH00946 61159fd50eb1290e820ece5734b8dda3 128 SUPERFAMILY SSF51182 1 114 1.81E-20 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_PD00456 db545b2e2d4063400155d3639a55ba33 537 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 108 450 3.2E-65 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_PD00456 db545b2e2d4063400155d3639a55ba33 537 Gene3D G3DSA:3.10.105.10 291 506 7.5E-93 T 12-10-2018 AMJ96_PD00456 db545b2e2d4063400155d3639a55ba33 537 Gene3D G3DSA:3.90.76.10 75 215 7.5E-93 T 12-10-2018 AMJ96_PD00456 db545b2e2d4063400155d3639a55ba33 537 SUPERFAMILY SSF53850 71 528 1.7E-108 T 12-10-2018 AMJ96_PD00456 db545b2e2d4063400155d3639a55ba33 537 Gene3D G3DSA:3.40.190.10 216 515 7.5E-93 T 12-10-2018 AMJ96_PD00456 db545b2e2d4063400155d3639a55ba33 537 PIRSF PIRSF002741 22 534 1.4E-71 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_CH01620 bf1e220ad27a3735017529864cb320a9 425 SUPERFAMILY SSF57716 16 51 1.2E-11 T 12-10-2018 AMJ96_CH01620 bf1e220ad27a3735017529864cb320a9 425 Gene3D G3DSA:1.10.8.60 316 424 5.4E-42 T 12-10-2018 AMJ96_CH01620 bf1e220ad27a3735017529864cb320a9 425 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 13 409 1.8E-201 T 12-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 AMJ96_CH01620 bf1e220ad27a3735017529864cb320a9 425 SMART SM00994 15 54 1.7E-24 T 12-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AMJ96_CH01620 bf1e220ad27a3735017529864cb320a9 425 Pfam PF06689 ClpX C4-type zinc finger 16 53 6.1E-20 T 12-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AMJ96_CH01620 bf1e220ad27a3735017529864cb320a9 425 SMART SM01086 317 412 2.1E-33 T 12-10-2018 IPR019489 Clp ATPase, C-terminal AMJ96_CH01620 bf1e220ad27a3735017529864cb320a9 425 Gene3D G3DSA:3.40.50.300 59 315 2.8E-108 T 12-10-2018 AMJ96_CH01620 bf1e220ad27a3735017529864cb320a9 425 SUPERFAMILY SSF52540 66 400 8.45E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01620 bf1e220ad27a3735017529864cb320a9 425 Pfam PF07724 AAA domain (Cdc48 subfamily) 114 310 2.3E-49 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMJ96_CH01620 bf1e220ad27a3735017529864cb320a9 425 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 317 389 2.2E-16 T 12-10-2018 IPR019489 Clp ATPase, C-terminal AMJ96_CH01620 bf1e220ad27a3735017529864cb320a9 425 Gene3D G3DSA:3.30.50.30 6 54 2.8E-24 T 12-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily AMJ96_CH01620 bf1e220ad27a3735017529864cb320a9 425 SMART SM00382 113 266 5.6E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01620 bf1e220ad27a3735017529864cb320a9 425 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 415 53.871 T 12-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 AMJ96_CH01225 fd9c629d9a28b223241027bfa1461860 151 SUPERFAMILY SSF55811 3 131 1.49E-14 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_CH01225 fd9c629d9a28b223241027bfa1461860 151 Gene3D G3DSA:3.90.79.10 2 150 1.2E-18 T 12-10-2018 AMJ96_CH01225 fd9c629d9a28b223241027bfa1461860 151 Pfam PF00293 NUDIX domain 36 126 6.9E-7 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMJ96_CH03194 019047c6c4e79465223dd218d14c6a72 180 SUPERFAMILY SSF53271 10 177 4.59E-53 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like AMJ96_CH03194 019047c6c4e79465223dd218d14c6a72 180 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 8 176 6.9E-67 T 12-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 AMJ96_CH03194 019047c6c4e79465223dd218d14c6a72 180 Gene3D G3DSA:3.40.50.2020 2 180 8.6E-67 T 12-10-2018 AMJ96_CH03194 019047c6c4e79465223dd218d14c6a72 180 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 8 177 37.533 T 12-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 AMJ96_CH03194 019047c6c4e79465223dd218d14c6a72 180 Pfam PF00156 Phosphoribosyl transferase domain 35 157 4.7E-16 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMJ96_PB00325 4380187bf6b045c7537c8a8187b51c2a 689 Pfam PF07508 Recombinase 191 311 8.7E-12 T 12-10-2018 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 AMJ96_PB00325 4380187bf6b045c7537c8a8187b51c2a 689 SUPERFAMILY SSF53041 15 165 1.11E-22 T 12-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 AMJ96_PB00325 4380187bf6b045c7537c8a8187b51c2a 689 SMART SM00857 16 166 1.3E-30 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMJ96_PB00325 4380187bf6b045c7537c8a8187b51c2a 689 Pfam PF00239 Resolvase, N terminal domain 16 165 2.0E-22 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMJ96_PB00325 4380187bf6b045c7537c8a8187b51c2a 689 Gene3D G3DSA:3.40.50.1390 12 168 7.0E-24 T 12-10-2018 AMJ96_CH03453 ae802093fceb81fd472418419d38cb6c 581 SMART SM00382 39 246 1.2E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03453 ae802093fceb81fd472418419d38cb6c 581 SMART SM00382 358 548 2.3E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03453 ae802093fceb81fd472418419d38cb6c 581 Pfam PF00005 ABC transporter 30 172 1.6E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03453 ae802093fceb81fd472418419d38cb6c 581 Gene3D G3DSA:3.40.50.300 324 563 1.2E-66 T 12-10-2018 AMJ96_CH03453 ae802093fceb81fd472418419d38cb6c 581 Gene3D G3DSA:3.40.50.300 7 244 1.1E-59 T 12-10-2018 AMJ96_CH03453 ae802093fceb81fd472418419d38cb6c 581 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03453 ae802093fceb81fd472418419d38cb6c 581 SUPERFAMILY SSF52540 12 235 8.5E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03453 ae802093fceb81fd472418419d38cb6c 581 SUPERFAMILY SSF52540 332 554 5.65E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03453 ae802093fceb81fd472418419d38cb6c 581 Pfam PF00005 ABC transporter 350 493 1.4E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH04343 02d6e5400b04952e1d0eeb8b53fffc3c 301 Gene3D G3DSA:3.20.20.60 3 298 1.6E-87 T 12-10-2018 AMJ96_CH04343 02d6e5400b04952e1d0eeb8b53fffc3c 301 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 14 232 6.2E-39 T 12-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 AMJ96_CH04343 02d6e5400b04952e1d0eeb8b53fffc3c 301 PIRSF PIRSF015582 1 301 8.1E-71 T 12-10-2018 IPR011206 Citrate lyase beta subunit-like AMJ96_CH04343 02d6e5400b04952e1d0eeb8b53fffc3c 301 SUPERFAMILY SSF51621 12 242 9.42E-61 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMJ96_CH02777 224811b203f806a67cf7f21301023b27 272 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 188 236 - T 12-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02777 224811b203f806a67cf7f21301023b27 272 Gene3D G3DSA:1.10.287.90 42 110 5.8E-61 T 12-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02777 224811b203f806a67cf7f21301023b27 272 Gene3D G3DSA:2.60.40.420 111 252 5.8E-61 T 12-10-2018 IPR008972 Cupredoxin AMJ96_CH02777 224811b203f806a67cf7f21301023b27 272 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 117 237 1.1E-14 T 12-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02777 224811b203f806a67cf7f21301023b27 272 SUPERFAMILY SSF81464 23 102 1.53E-5 T 12-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02777 224811b203f806a67cf7f21301023b27 272 SUPERFAMILY SSF49503 109 261 2.17E-42 T 12-10-2018 IPR008972 Cupredoxin AMJ96_CH02550 d6765a17bf53a88b852ef0619a7e78e8 335 Pfam PF00155 Aminotransferase class I and II 34 321 2.3E-31 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_CH02550 d6765a17bf53a88b852ef0619a7e78e8 335 Gene3D G3DSA:3.40.640.10 36 246 4.1E-46 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH02550 d6765a17bf53a88b852ef0619a7e78e8 335 Gene3D G3DSA:3.90.1150.10 25 315 4.1E-46 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH02550 d6765a17bf53a88b852ef0619a7e78e8 335 SUPERFAMILY SSF53383 6 332 3.34E-52 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH02550 d6765a17bf53a88b852ef0619a7e78e8 335 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 198 211 - T 12-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AMJ96_CH02550 d6765a17bf53a88b852ef0619a7e78e8 335 TIGRFAM TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase 7 331 2.1E-101 T 12-10-2018 IPR005860 L-threonine-O-3-phosphate decarboxylase GO:0003824|GO:0009236 KEGG: 00860+4.1.1.81|MetaCyc: PWY-5443 AMJ96_CH03853 70876824ed6f50c7155fcf7d5e79fa8f 724 SMART SM00044 425 630 3.2E-18 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH03853 70876824ed6f50c7155fcf7d5e79fa8f 724 SMART SM01080 31 365 3.8E-76 T 12-10-2018 IPR007890 CHASE2 AMJ96_CH03853 70876824ed6f50c7155fcf7d5e79fa8f 724 SUPERFAMILY SSF55073 459 649 5.02E-53 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03853 70876824ed6f50c7155fcf7d5e79fa8f 724 Pfam PF05226 CHASE2 domain 17 363 1.2E-49 T 12-10-2018 IPR007890 CHASE2 AMJ96_CH03853 70876824ed6f50c7155fcf7d5e79fa8f 724 Gene3D G3DSA:3.30.70.1230 453 658 3.0E-58 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03853 70876824ed6f50c7155fcf7d5e79fa8f 724 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 464 642 1.0E-31 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH02503 a5345d2ec1d39a940e4db8c9a1cbf074 340 SUPERFAMILY SSF56935 57 340 7.12E-18 T 12-10-2018 AMJ96_CH02503 a5345d2ec1d39a940e4db8c9a1cbf074 340 Gene3D G3DSA:2.40.160.10 119 334 8.5E-9 T 12-10-2018 IPR023614 Porin domain superfamily AMJ96_CH02503 a5345d2ec1d39a940e4db8c9a1cbf074 340 Pfam PF02530 Porin subfamily 24 325 2.2E-93 T 12-10-2018 IPR003684 Porin, alpha proteobacteria type GO:0015288|GO:0016020|GO:0055085 AMJ96_PB00304 4847dab3a03aaf7a308f919f679ea44a 282 SUPERFAMILY SSF52402 1 262 3.56E-74 T 12-10-2018 AMJ96_PB00304 4847dab3a03aaf7a308f919f679ea44a 282 Pfam PF01012 Electron transfer flavoprotein domain 23 214 1.6E-49 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMJ96_PB00304 4847dab3a03aaf7a308f919f679ea44a 282 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 163 183 - T 12-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AMJ96_PB00304 4847dab3a03aaf7a308f919f679ea44a 282 SMART SM00893 22 219 1.2E-62 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMJ96_PB00304 4847dab3a03aaf7a308f919f679ea44a 282 Gene3D G3DSA:3.40.50.620 1 267 8.6E-89 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_PB00304 4847dab3a03aaf7a308f919f679ea44a 282 PIRSF PIRSF000090 1 270 3.7E-87 T 12-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AMJ96_CH00478 f7fbe47cfcff5319848f2f300254b05a 515 SUPERFAMILY SSF141868 264 504 7.59E-81 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH00478 f7fbe47cfcff5319848f2f300254b05a 515 Gene3D G3DSA:3.20.20.450 263 507 9.3E-87 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH00478 f7fbe47cfcff5319848f2f300254b05a 515 SUPERFAMILY SSF55073 96 247 3.3E-41 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH00478 f7fbe47cfcff5319848f2f300254b05a 515 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 88 247 4.5E-37 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH00478 f7fbe47cfcff5319848f2f300254b05a 515 SMART SM00267 80 249 2.4E-47 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH00478 f7fbe47cfcff5319848f2f300254b05a 515 Gene3D G3DSA:3.30.70.270 86 262 4.5E-51 T 12-10-2018 AMJ96_CH00478 f7fbe47cfcff5319848f2f300254b05a 515 Pfam PF00563 EAL domain 266 496 4.9E-67 T 12-10-2018 IPR001633 EAL domain AMJ96_CH00478 f7fbe47cfcff5319848f2f300254b05a 515 Pfam PF00990 Diguanylate cyclase, GGDEF domain 91 244 5.9E-40 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH00478 f7fbe47cfcff5319848f2f300254b05a 515 SMART SM00052 259 501 3.4E-98 T 12-10-2018 IPR001633 EAL domain AMJ96_CH03026 22ab4a587f7423cfb17b14d5e8478c11 391 Pfam PF01266 FAD dependent oxidoreductase 7 371 5.1E-33 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_CH03026 22ab4a587f7423cfb17b14d5e8478c11 391 Gene3D G3DSA:3.30.9.10 66 333 3.7E-62 T 12-10-2018 AMJ96_CH03026 22ab4a587f7423cfb17b14d5e8478c11 391 SUPERFAMILY SSF51905 5 376 5.31E-29 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03026 22ab4a587f7423cfb17b14d5e8478c11 391 SUPERFAMILY SSF54373 224 332 3.06E-5 T 12-10-2018 AMJ96_CH03026 22ab4a587f7423cfb17b14d5e8478c11 391 Gene3D G3DSA:3.50.50.60 7 376 3.7E-62 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01019 2591afbb072fd877810c130b9d014d59 258 Pfam PF13462 Thioredoxin 84 255 9.9E-45 T 12-10-2018 IPR012336 Thioredoxin-like fold AMJ96_CH01019 2591afbb072fd877810c130b9d014d59 258 SUPERFAMILY SSF52833 81 255 4.27E-41 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH01019 2591afbb072fd877810c130b9d014d59 258 Gene3D G3DSA:3.40.30.10 70 258 2.8E-46 T 12-10-2018 AMJ96_PD00256 2eb769a480140d52575ce86c35d3f88c 122 Gene3D G3DSA:3.10.180.10 1 119 9.1E-22 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_PD00256 2eb769a480140d52575ce86c35d3f88c 122 SUPERFAMILY SSF54593 1 104 6.31E-21 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_PD00256 2eb769a480140d52575ce86c35d3f88c 122 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 103 2.2E-14 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH01644 11e3aec91bac31c43007d2e4a09ec443 163 SUPERFAMILY SSF54862 36 146 4.02E-27 T 12-10-2018 AMJ96_CH01644 11e3aec91bac31c43007d2e4a09ec443 163 Gene3D G3DSA:3.30.70.3270 36 161 1.6E-41 T 12-10-2018 AMJ96_CH01644 11e3aec91bac31c43007d2e4a09ec443 163 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 10 147 27.689 T 12-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01644 11e3aec91bac31c43007d2e4a09ec443 163 Pfam PF12838 4Fe-4S dicluster domain 62 117 5.5E-12 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMJ96_CH01644 11e3aec91bac31c43007d2e4a09ec443 163 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 20 141 1.7E-47 T 12-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01644 11e3aec91bac31c43007d2e4a09ec443 163 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 103 114 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMJ96_CH02308 b73b4e922f2460ab75ee516d5f3145bb 130 Gene3D G3DSA:2.60.300.12 5 111 9.3E-32 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMJ96_CH02308 b73b4e922f2460ab75ee516d5f3145bb 130 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 7 109 2.8E-32 T 12-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 AMJ96_CH02308 b73b4e922f2460ab75ee516d5f3145bb 130 TIGRFAM TIGR01997 sufA_proteo: FeS assembly scaffold SufA 4 111 5.7E-48 T 12-10-2018 IPR011298 FeS assembly scaffold SufA GO:0097428 AMJ96_CH02308 b73b4e922f2460ab75ee516d5f3145bb 130 SUPERFAMILY SSF89360 5 100 7.65E-26 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 AMJ96_CH02308 b73b4e922f2460ab75ee516d5f3145bb 130 Pfam PF01521 Iron-sulphur cluster biosynthesis 6 107 7.2E-17 T 12-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AMJ96_CH00897 83b1eaef681d74b93b5e0204929c874d 75 Gene3D G3DSA:3.30.70.790 1 75 2.5E-33 T 12-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 AMJ96_CH00897 83b1eaef681d74b93b5e0204929c874d 75 Pfam PF09413 Putative prokaryotic signal transducing protein 1 65 1.0E-22 T 12-10-2018 IPR018551 Domain of unknown function DUF2007 AMJ96_CH00897 83b1eaef681d74b93b5e0204929c874d 75 SUPERFAMILY SSF54913 1 73 5.56E-25 T 12-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta AMJ96_CH02511 0cef1621d775ee777a5370a02f749e3e 231 Pfam PF13975 gag-polyprotein putative aspartyl protease 125 215 2.3E-25 T 12-10-2018 AMJ96_CH02511 0cef1621d775ee777a5370a02f749e3e 231 Gene3D G3DSA:2.40.70.10 104 230 1.8E-32 T 12-10-2018 IPR021109 Aspartic peptidase domain superfamily AMJ96_CH02511 0cef1621d775ee777a5370a02f749e3e 231 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 135 146 - T 12-10-2018 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 AMJ96_CH02511 0cef1621d775ee777a5370a02f749e3e 231 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 112 230 3.0E-44 T 12-10-2018 IPR011969 Clan AA aspartic peptidase, C-terminal AMJ96_CH02511 0cef1621d775ee777a5370a02f749e3e 231 SUPERFAMILY SSF50630 114 218 7.64E-19 T 12-10-2018 IPR021109 Aspartic peptidase domain superfamily AMJ96_CH02601 2a8d1f0240e4ac8ce4ee71958e705962 410 Pfam PF07690 Major Facilitator Superfamily 22 352 1.0E-13 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH02601 2a8d1f0240e4ac8ce4ee71958e705962 410 SUPERFAMILY SSF103473 14 397 9.81E-30 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH02601 2a8d1f0240e4ac8ce4ee71958e705962 410 Gene3D G3DSA:1.20.1250.20 6 394 1.8E-23 T 12-10-2018 AMJ96_CH01873 956049dd3161ff6180618b8414d37a46 63 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 47 3.6E-23 T 12-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AMJ96_CH01873 956049dd3161ff6180618b8414d37a46 63 Pfam PF02416 mttA/Hcf106 family 4 48 5.6E-13 T 12-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 AMJ96_CH01873 956049dd3161ff6180618b8414d37a46 63 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 63 22.651 T 12-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AMJ96_PA00168 8b2c2f80a7f1e81b81e1bfedcf202074 151 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 12 104 6.4E-12 T 12-10-2018 IPR024747 Pyridoxamine 5'-phosphate oxidase-related AMJ96_PA00168 8b2c2f80a7f1e81b81e1bfedcf202074 151 Gene3D G3DSA:2.30.110.10 4 148 3.3E-40 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMJ96_PA00168 8b2c2f80a7f1e81b81e1bfedcf202074 151 SUPERFAMILY SSF50475 5 145 1.18E-34 T 12-10-2018 AMJ96_PA00078 41906e829f4d199359956a74e56cc82f 483 SUPERFAMILY SSF56954 10 468 6.67E-101 T 12-10-2018 AMJ96_PA00078 41906e829f4d199359956a74e56cc82f 483 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 19 467 5.8E-131 T 12-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 AMJ96_PA00078 41906e829f4d199359956a74e56cc82f 483 Pfam PF02321 Outer membrane efflux protein 68 255 8.3E-26 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMJ96_PA00078 41906e829f4d199359956a74e56cc82f 483 Pfam PF02321 Outer membrane efflux protein 287 465 2.1E-27 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMJ96_PA00078 41906e829f4d199359956a74e56cc82f 483 Gene3D G3DSA:2.20.200.10 105 356 1.3E-115 T 12-10-2018 AMJ96_PA00078 41906e829f4d199359956a74e56cc82f 483 Gene3D G3DSA:1.20.1600.10 58 467 1.3E-115 T 12-10-2018 AMJ96_CH03430 7adb48eeaaad78e0a9746063f477f781 587 SMART SM00382 359 546 7.7E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03430 7adb48eeaaad78e0a9746063f477f781 587 Pfam PF00005 ABC transporter 351 498 9.4E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03430 7adb48eeaaad78e0a9746063f477f781 587 Gene3D G3DSA:3.40.50.300 328 576 7.2E-65 T 12-10-2018 AMJ96_CH03430 7adb48eeaaad78e0a9746063f477f781 587 Pfam PF00664 ABC transporter transmembrane region 23 281 1.7E-18 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_CH03430 7adb48eeaaad78e0a9746063f477f781 587 Gene3D G3DSA:1.20.1560.10 12 320 5.8E-40 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH03430 7adb48eeaaad78e0a9746063f477f781 587 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 16 559 1.1E-213 T 12-10-2018 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 AMJ96_CH03430 7adb48eeaaad78e0a9746063f477f781 587 SUPERFAMILY SSF52540 327 559 1.88E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03430 7adb48eeaaad78e0a9746063f477f781 587 ProSitePatterns PS00211 ABC transporters family signature. 471 485 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03430 7adb48eeaaad78e0a9746063f477f781 587 SUPERFAMILY SSF90123 15 323 3.53E-45 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH01177 9131c9e7bf4f1412d6dd9d55723c9647 182 Pfam PF03729 Short repeat of unknown function (DUF308) 78 146 1.5E-7 T 12-10-2018 IPR005325 Protein of unknown function DUF308, membrane AMJ96_CH01177 9131c9e7bf4f1412d6dd9d55723c9647 182 Pfam PF03729 Short repeat of unknown function (DUF308) 23 88 7.4E-13 T 12-10-2018 IPR005325 Protein of unknown function DUF308, membrane AMJ96_CH04319 381fe7e3d8031f2a40140ac3314b9be4 218 Gene3D G3DSA:3.40.630.30 10 187 1.8E-39 T 12-10-2018 AMJ96_CH04319 381fe7e3d8031f2a40140ac3314b9be4 218 Pfam PF13302 Acetyltransferase (GNAT) domain 41 180 8.5E-27 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH04319 381fe7e3d8031f2a40140ac3314b9be4 218 SUPERFAMILY SSF55729 34 201 1.02E-35 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH00519 f4f552fe5f71d244e4b7d565b609a602 378 Pfam PF01757 Acyltransferase family 12 352 6.9E-27 T 12-10-2018 IPR002656 Acyltransferase 3 GO:0016747 AMJ96_CH00702 59e5138a37e3b3af0d82f21165f81127 160 Gene3D G3DSA:2.30.30.760 100 159 1.9E-14 T 12-10-2018 AMJ96_CH00702 59e5138a37e3b3af0d82f21165f81127 160 SMART SM00858 34 96 0.0054 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMJ96_CH00702 59e5138a37e3b3af0d82f21165f81127 160 Pfam PF13144 Chaperone for flagella basal body P-ring formation 34 157 2.5E-23 T 12-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal AMJ96_CH00702 59e5138a37e3b3af0d82f21165f81127 160 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 33 157 2.2E-33 T 12-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal AMJ96_CH03865 a51c6989bc7f96497517a35c790a7b18 179 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 30 161 7.2E-28 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ AMJ96_CH04208 20348eeea3fb20d63d874e95b6f12201 233 PIRSF PIRSF000386 3 233 1.4E-92 T 12-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMJ96_CH04208 20348eeea3fb20d63d874e95b6f12201 233 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 6 229 1.9E-78 T 12-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMJ96_CH04208 20348eeea3fb20d63d874e95b6f12201 233 Gene3D G3DSA:3.40.1280.10 1 168 1.8E-62 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMJ96_CH04208 20348eeea3fb20d63d874e95b6f12201 233 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 25 221 3.4E-54 T 12-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMJ96_CH04208 20348eeea3fb20d63d874e95b6f12201 233 SUPERFAMILY SSF75217 2 229 3.73E-92 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases AMJ96_CH04208 20348eeea3fb20d63d874e95b6f12201 233 Gene3D G3DSA:1.10.1270.20 170 232 9.2E-29 T 12-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMJ96_CH04208 20348eeea3fb20d63d874e95b6f12201 233 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 233 103.959 T 12-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AMJ96_PD00143 d2de7b71131794a59327c9154186059f 246 SUPERFAMILY SSF55681 2 150 1.66E-21 T 12-10-2018 AMJ96_PD00143 d2de7b71131794a59327c9154186059f 246 Gene3D G3DSA:3.30.930.10 1 149 6.0E-19 T 12-10-2018 AMJ96_PD00143 d2de7b71131794a59327c9154186059f 246 SUPERFAMILY SSF101353 161 200 2.88E-6 T 12-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 AMJ96_PD00143 d2de7b71131794a59327c9154186059f 246 Pfam PF01411 tRNA synthetases class II (A) 1 77 3.1E-8 T 12-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 AMJ96_PD00143 d2de7b71131794a59327c9154186059f 246 Pfam PF01411 tRNA synthetases class II (A) 161 208 4.5E-5 T 12-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 AMJ96_PC00321 2982f86e2ffc14282879d38bf8a7cb54 496 PRINTS PR00811 Bacterial general secretion pathway protein D signature 394 412 1.0E-13 T 12-10-2018 IPR001775 GspD/PilQ family AMJ96_PC00321 2982f86e2ffc14282879d38bf8a7cb54 496 PRINTS PR00811 Bacterial general secretion pathway protein D signature 184 194 1.0E-13 T 12-10-2018 IPR001775 GspD/PilQ family AMJ96_PC00321 2982f86e2ffc14282879d38bf8a7cb54 496 PRINTS PR00811 Bacterial general secretion pathway protein D signature 266 290 1.0E-13 T 12-10-2018 IPR001775 GspD/PilQ family AMJ96_PC00321 2982f86e2ffc14282879d38bf8a7cb54 496 PRINTS PR00811 Bacterial general secretion pathway protein D signature 417 431 1.0E-13 T 12-10-2018 IPR001775 GspD/PilQ family AMJ96_PC00321 2982f86e2ffc14282879d38bf8a7cb54 496 Pfam PF00263 Bacterial type II and III secretion system protein 270 430 9.0E-47 T 12-10-2018 IPR004846 Type II/III secretion system GO:0009306 AMJ96_PC00321 2982f86e2ffc14282879d38bf8a7cb54 496 Pfam PF13629 Pilus formation protein N terminal region 49 117 4.7E-13 T 12-10-2018 IPR032789 Pilus formation protein, N-terminal AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 354 490 8.5E-20 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 PIRSF PIRSF001174 1 776 0.0 T 12-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 SUPERFAMILY SSF54211 596 771 2.28E-58 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 Gene3D G3DSA:1.20.58.1480 122 247 4.3E-45 T 12-10-2018 AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 677 685 - T 12-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 TIGRFAM TIGR00763 lon: endopeptidase La 14 772 2.8E-299 T 12-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 SMART SM00382 350 494 7.5E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 Hamap MF_01973 Lon protease [lon]. 13 773 72.317 T 12-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 571 773 9.9E-99 T 12-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 596 612 4.8E-56 T 12-10-2018 AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 674 693 4.8E-56 T 12-10-2018 AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 727 745 4.8E-56 T 12-10-2018 AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 358 377 4.8E-56 T 12-10-2018 AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 704 723 4.8E-56 T 12-10-2018 AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 Gene3D G3DSA:3.40.50.300 315 492 5.3E-63 T 12-10-2018 AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 SMART SM00464 12 204 3.3E-74 T 12-10-2018 IPR003111 Lon, substrate-binding domain AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 Gene3D G3DSA:1.10.8.60 493 585 1.5E-29 T 12-10-2018 AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 SUPERFAMILY SSF52540 317 586 1.87E-50 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 SUPERFAMILY SSF88697 14 203 3.48E-46 T 12-10-2018 IPR015947 PUA-like superfamily AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 Gene3D G3DSA:3.30.230.10 594 780 4.4E-80 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 13 203 2.6E-41 T 12-10-2018 IPR003111 Lon, substrate-binding domain AMJ96_CH01621 17afa0e1b0b0111dacf711e506e04db6 805 Gene3D G3DSA:2.30.130.40 9 115 5.7E-32 T 12-10-2018 AMJ96_CH00886 abe85290e8a506589765fd662a27b8a5 75 Hamap MF_01396 ATP synthase subunit c [atpH]. 4 72 13.579 T 12-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH00886 abe85290e8a506589765fd662a27b8a5 75 Pfam PF00137 ATP synthase subunit C 9 71 1.9E-12 T 12-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 AMJ96_CH00886 abe85290e8a506589765fd662a27b8a5 75 PRINTS PR00124 ATP synthase C subunit signature 9 28 5.4E-24 T 12-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH00886 abe85290e8a506589765fd662a27b8a5 75 PRINTS PR00124 ATP synthase C subunit signature 47 72 5.4E-24 T 12-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH00886 abe85290e8a506589765fd662a27b8a5 75 PRINTS PR00124 ATP synthase C subunit signature 30 45 5.4E-24 T 12-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH00886 abe85290e8a506589765fd662a27b8a5 75 SUPERFAMILY SSF81333 5 74 1.44E-16 T 12-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily AMJ96_CH00886 abe85290e8a506589765fd662a27b8a5 75 Gene3D G3DSA:1.20.20.10 2 75 6.0E-26 T 12-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AMJ96_CH00693 aca51de5dbb06d38add42dc705eaa7d0 316 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 233 303 1.7E-16 T 12-10-2018 IPR001543 Surface presentation of antigen (SpoA) AMJ96_CH00693 aca51de5dbb06d38add42dc705eaa7d0 316 SUPERFAMILY SSF101801 233 311 4.58E-11 T 12-10-2018 IPR036429 SpoA-like superfamily AMJ96_CH00693 aca51de5dbb06d38add42dc705eaa7d0 316 Gene3D G3DSA:3.40.1550.10 32 210 2.2E-12 T 12-10-2018 IPR028976 CheC-like superfamily AMJ96_PA00278 156e1caa050a47a5d0176580aaa6e6bb 238 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 163 233 2.2E-6 T 12-10-2018 IPR010221 VCBS repeat AMJ96_PA00278 156e1caa050a47a5d0176580aaa6e6bb 238 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 50 132 1.1E-7 T 12-10-2018 IPR010221 VCBS repeat AMJ96_PD00633 89f0aaa1e3c0109d54c86fce16718071 551 Pfam PF03050 Transposase IS66 family 197 495 2.5E-86 T 12-10-2018 IPR004291 Transposase, IS66 AMJ96_PD00633 89f0aaa1e3c0109d54c86fce16718071 551 Pfam PF13007 Transposase C of IS166 homeodomain 56 132 4.3E-17 T 12-10-2018 IPR024463 Transposase TnpC, homeodomain AMJ96_PD00633 89f0aaa1e3c0109d54c86fce16718071 551 Pfam PF13005 zinc-finger binding domain of transposase IS66 137 182 2.0E-15 T 12-10-2018 IPR024474 Zinc-finger binding domain of transposase IS66 AMJ96_PD00633 89f0aaa1e3c0109d54c86fce16718071 551 Pfam PF13817 IS66 C-terminal element 502 539 4.3E-15 T 12-10-2018 IPR039552 Transposase IS66, C-terminal AMJ96_PB00150 89f0aaa1e3c0109d54c86fce16718071 551 Pfam PF03050 Transposase IS66 family 197 495 2.5E-86 T 12-10-2018 IPR004291 Transposase, IS66 AMJ96_PB00150 89f0aaa1e3c0109d54c86fce16718071 551 Pfam PF13007 Transposase C of IS166 homeodomain 56 132 4.3E-17 T 12-10-2018 IPR024463 Transposase TnpC, homeodomain AMJ96_PB00150 89f0aaa1e3c0109d54c86fce16718071 551 Pfam PF13005 zinc-finger binding domain of transposase IS66 137 182 2.0E-15 T 12-10-2018 IPR024474 Zinc-finger binding domain of transposase IS66 AMJ96_PB00150 89f0aaa1e3c0109d54c86fce16718071 551 Pfam PF13817 IS66 C-terminal element 502 539 4.3E-15 T 12-10-2018 IPR039552 Transposase IS66, C-terminal AMJ96_PB00078 89f0aaa1e3c0109d54c86fce16718071 551 Pfam PF03050 Transposase IS66 family 197 495 2.5E-86 T 12-10-2018 IPR004291 Transposase, IS66 AMJ96_PB00078 89f0aaa1e3c0109d54c86fce16718071 551 Pfam PF13007 Transposase C of IS166 homeodomain 56 132 4.3E-17 T 12-10-2018 IPR024463 Transposase TnpC, homeodomain AMJ96_PB00078 89f0aaa1e3c0109d54c86fce16718071 551 Pfam PF13005 zinc-finger binding domain of transposase IS66 137 182 2.0E-15 T 12-10-2018 IPR024474 Zinc-finger binding domain of transposase IS66 AMJ96_PB00078 89f0aaa1e3c0109d54c86fce16718071 551 Pfam PF13817 IS66 C-terminal element 502 539 4.3E-15 T 12-10-2018 IPR039552 Transposase IS66, C-terminal AMJ96_PB00333 cc70890a4977a0d9592f44a9caef4d6a 517 Gene3D G3DSA:1.50.10.20 262 484 3.2E-20 T 12-10-2018 AMJ96_PB00333 cc70890a4977a0d9592f44a9caef4d6a 517 Gene3D G3DSA:1.50.10.160 28 242 5.6E-18 T 12-10-2018 AMJ96_PB00333 cc70890a4977a0d9592f44a9caef4d6a 517 SUPERFAMILY SSF48239 244 464 1.1E-24 T 12-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AMJ96_PB00333 cc70890a4977a0d9592f44a9caef4d6a 517 SUPERFAMILY SSF48239 22 312 2.62E-15 T 12-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AMJ96_CH01463 8eef12f7b0e34d3e26463d57725995d0 207 Gene3D G3DSA:3.40.50.450 2 199 2.8E-70 T 12-10-2018 AMJ96_CH01463 8eef12f7b0e34d3e26463d57725995d0 207 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 10 186 1.5E-55 T 12-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG AMJ96_CH01463 8eef12f7b0e34d3e26463d57725995d0 207 Pfam PF03641 Possible lysine decarboxylase 53 183 2.2E-41 T 12-10-2018 IPR031100 LOG family AMJ96_CH01463 8eef12f7b0e34d3e26463d57725995d0 207 SUPERFAMILY SSF102405 8 187 9.01E-61 T 12-10-2018 AMJ96_CH00714 b960302960bdcec9ebe7f191a4a97fe5 342 Pfam PF00700 Bacterial flagellin C-terminal helical region 257 341 1.0E-10 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMJ96_CH00714 b960302960bdcec9ebe7f191a4a97fe5 342 Gene3D G3DSA:1.20.1330.10 66 202 2.6E-11 T 12-10-2018 AMJ96_CH00714 b960302960bdcec9ebe7f191a4a97fe5 342 Gene3D G3DSA:2.30.220.10 220 312 2.6E-11 T 12-10-2018 AMJ96_CH00714 b960302960bdcec9ebe7f191a4a97fe5 342 PRINTS PR00207 Flagellin signature 58 75 1.8E-5 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AMJ96_CH00714 b960302960bdcec9ebe7f191a4a97fe5 342 PRINTS PR00207 Flagellin signature 129 152 1.8E-5 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AMJ96_CH00714 b960302960bdcec9ebe7f191a4a97fe5 342 PRINTS PR00207 Flagellin signature 97 116 1.8E-5 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AMJ96_CH00714 b960302960bdcec9ebe7f191a4a97fe5 342 Pfam PF00669 Bacterial flagellin N-terminal helical region 28 157 2.3E-25 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMJ96_CH00714 b960302960bdcec9ebe7f191a4a97fe5 342 SUPERFAMILY SSF64518 28 338 5.23E-45 T 12-10-2018 AMJ96_CH00714 b960302960bdcec9ebe7f191a4a97fe5 342 Gene3D G3DSA:1.20.58.1830 28 54 2.6E-11 T 12-10-2018 AMJ96_CH00714 b960302960bdcec9ebe7f191a4a97fe5 342 Gene3D G3DSA:2.170.280.10 203 325 2.6E-11 T 12-10-2018 AMJ96_CH01577 36875cc8e4c1fd909fe998633d1e5a06 222 ProSitePatterns PS01228 Hypothetical cof family signature 1. 14 25 - T 12-10-2018 AMJ96_CH01577 36875cc8e4c1fd909fe998633d1e5a06 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 93 185 1.9E-12 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH01577 36875cc8e4c1fd909fe998633d1e5a06 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 16 185 3.2E-15 T 12-10-2018 AMJ96_CH01577 36875cc8e4c1fd909fe998633d1e5a06 222 SUPERFAMILY SSF56784 12 193 1.03E-37 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_CH01577 36875cc8e4c1fd909fe998633d1e5a06 222 Gene3D G3DSA:3.40.50.1000 13 192 4.8E-47 T 12-10-2018 IPR023214 HAD superfamily AMJ96_CH01577 36875cc8e4c1fd909fe998633d1e5a06 222 Gene3D G3DSA:1.10.150.240 27 87 4.8E-47 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMJ96_CH00314 cba7b503a913974fdb2a54ff69d8a23d 365 SUPERFAMILY SSF50969 57 346 1.88E-19 T 12-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like AMJ96_CH00314 cba7b503a913974fdb2a54ff69d8a23d 365 Gene3D G3DSA:2.130.10.10 36 254 4.8E-11 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMJ96_CH00314 cba7b503a913974fdb2a54ff69d8a23d 365 PIRSF PIRSF028101 1 360 1.0E-151 T 12-10-2018 IPR008311 Uncharacterised conserved protein UCP028101 AMJ96_CH00314 cba7b503a913974fdb2a54ff69d8a23d 365 Pfam PF07433 Protein of unknown function (DUF1513) 66 358 3.0E-107 T 12-10-2018 IPR008311 Uncharacterised conserved protein UCP028101 AMJ96_PD00603 0efe1e616314c2fcd020017a84895618 355 SUPERFAMILY SSF52540 4 242 6.16E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00603 0efe1e616314c2fcd020017a84895618 355 Pfam PF00005 ABC transporter 19 161 8.2E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00603 0efe1e616314c2fcd020017a84895618 355 Pfam PF08402 TOBE domain 275 346 2.3E-8 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_PD00603 0efe1e616314c2fcd020017a84895618 355 Gene3D G3DSA:2.40.50.140 278 339 4.8E-21 T 12-10-2018 AMJ96_PD00603 0efe1e616314c2fcd020017a84895618 355 Gene3D G3DSA:3.40.50.300 1 238 2.2E-74 T 12-10-2018 AMJ96_PD00603 0efe1e616314c2fcd020017a84895618 355 SUPERFAMILY SSF50331 236 354 1.34E-27 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_PD00603 0efe1e616314c2fcd020017a84895618 355 SMART SM00382 28 211 2.9E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00603 0efe1e616314c2fcd020017a84895618 355 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00603 0efe1e616314c2fcd020017a84895618 355 Gene3D G3DSA:2.40.50.100 239 352 4.8E-21 T 12-10-2018 AMJ96_CH03031 9ff2fa873564b9591e89bd899ed6e422 403 Gene3D G3DSA:3.40.50.450 1 218 1.3E-40 T 12-10-2018 AMJ96_CH03031 9ff2fa873564b9591e89bd899ed6e422 403 PIRSF PIRSF036484 1 403 2.1E-237 T 12-10-2018 IPR011405 Pyrophosphate-dependent phosphofructokinase SMc01852 type GO:0006096|GO:0047334 KEGG: 00010+2.7.1.90|KEGG: 00030+2.7.1.90|KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042 AMJ96_CH03031 9ff2fa873564b9591e89bd899ed6e422 403 Pfam PF00365 Phosphofructokinase 5 293 4.3E-35 T 12-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AMJ96_CH03031 9ff2fa873564b9591e89bd899ed6e422 403 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 184 200 2.5E-14 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AMJ96_CH03031 9ff2fa873564b9591e89bd899ed6e422 403 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 112 128 2.5E-14 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AMJ96_CH03031 9ff2fa873564b9591e89bd899ed6e422 403 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 8 27 2.5E-14 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AMJ96_CH03031 9ff2fa873564b9591e89bd899ed6e422 403 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 145 162 2.5E-14 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AMJ96_CH03031 9ff2fa873564b9591e89bd899ed6e422 403 Hamap MF_01977 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 2 399 62.855 T 12-10-2018 IPR011405 Pyrophosphate-dependent phosphofructokinase SMc01852 type GO:0006096|GO:0047334 KEGG: 00010+2.7.1.90|KEGG: 00030+2.7.1.90|KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042 AMJ96_CH03031 9ff2fa873564b9591e89bd899ed6e422 403 SUPERFAMILY SSF53784 4 400 2.09E-76 T 12-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AMJ96_CH00109 298ac4f990ed8434fa548d0c4f7706cc 171 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 2 171 47.377 T 12-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMJ96_CH00109 298ac4f990ed8434fa548d0c4f7706cc 171 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 4 169 1.5E-91 T 12-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMJ96_CH00109 298ac4f990ed8434fa548d0c4f7706cc 171 Gene3D G3DSA:3.10.129.10 2 171 3.8E-61 T 12-10-2018 AMJ96_CH00109 298ac4f990ed8434fa548d0c4f7706cc 171 SUPERFAMILY SSF54637 3 168 6.46E-54 T 12-10-2018 IPR029069 HotDog domain superfamily AMJ96_CH00109 298ac4f990ed8434fa548d0c4f7706cc 171 Pfam PF07977 FabA-like domain 29 158 3.3E-48 T 12-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMJ96_CH03973 953fb522be1aa39e1b44992a2df13d04 137 TIGRFAM TIGR00333 nrdI: nrdI protein 5 133 4.4E-49 T 12-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI AMJ96_CH03973 953fb522be1aa39e1b44992a2df13d04 137 Hamap MF_00128 Protein NrdI [nrdI]. 3 135 34.379 T 12-10-2018 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial AMJ96_CH03973 953fb522be1aa39e1b44992a2df13d04 137 SUPERFAMILY SSF52218 2 134 1.09E-24 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_CH03973 953fb522be1aa39e1b44992a2df13d04 137 PIRSF PIRSF005087 1 137 1.0E-52 T 12-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI AMJ96_CH03973 953fb522be1aa39e1b44992a2df13d04 137 Pfam PF07972 NrdI Flavodoxin like 5 125 8.7E-45 T 12-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI AMJ96_CH03973 953fb522be1aa39e1b44992a2df13d04 137 Gene3D G3DSA:3.40.50.360 3 136 8.2E-46 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_PC00234 0fb2f92691120f802d3da8087063b7e2 406 Gene3D G3DSA:1.20.1250.20 221 405 1.6E-15 T 12-10-2018 AMJ96_PC00234 0fb2f92691120f802d3da8087063b7e2 406 Pfam PF07690 Major Facilitator Superfamily 235 401 1.8E-9 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_PC00234 0fb2f92691120f802d3da8087063b7e2 406 Pfam PF07690 Major Facilitator Superfamily 21 221 4.5E-11 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_PC00234 0fb2f92691120f802d3da8087063b7e2 406 Gene3D G3DSA:1.20.1250.20 11 210 3.5E-15 T 12-10-2018 AMJ96_PC00234 0fb2f92691120f802d3da8087063b7e2 406 SUPERFAMILY SSF103473 15 402 5.49E-40 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH01654 57ab4335508c53f8c43a495cd7b87deb 440 Hamap MF_01570 Proline--tRNA ligase [proS]. 1 440 61.996 T 12-10-2018 IPR023716 Proline-tRNA ligase, class IIa, type 2 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMJ96_CH01654 57ab4335508c53f8c43a495cd7b87deb 440 Gene3D G3DSA:3.40.50.800 334 439 1.4E-29 T 12-10-2018 IPR036621 Anticodon-binding domain superfamily AMJ96_CH01654 57ab4335508c53f8c43a495cd7b87deb 440 Gene3D G3DSA:3.30.930.10 1 333 8.5E-110 T 12-10-2018 AMJ96_CH01654 57ab4335508c53f8c43a495cd7b87deb 440 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 2.4E-14 T 12-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AMJ96_CH01654 57ab4335508c53f8c43a495cd7b87deb 440 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 2.4E-14 T 12-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AMJ96_CH01654 57ab4335508c53f8c43a495cd7b87deb 440 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 2.4E-14 T 12-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AMJ96_CH01654 57ab4335508c53f8c43a495cd7b87deb 440 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 2.4E-14 T 12-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AMJ96_CH01654 57ab4335508c53f8c43a495cd7b87deb 440 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 224 2.9E-99 T 12-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AMJ96_CH01654 57ab4335508c53f8c43a495cd7b87deb 440 Pfam PF03129 Anticodon binding domain 348 438 2.6E-18 T 12-10-2018 IPR004154 Anticodon-binding AMJ96_CH01654 57ab4335508c53f8c43a495cd7b87deb 440 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 330 8.4E-35 T 12-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH01654 57ab4335508c53f8c43a495cd7b87deb 440 SUPERFAMILY SSF52954 336 439 6.54E-29 T 12-10-2018 AMJ96_CH01654 57ab4335508c53f8c43a495cd7b87deb 440 SUPERFAMILY SSF55681 10 351 4.77E-93 T 12-10-2018 AMJ96_CH04217 d3661ad02e50de713dbe38e9c4ede95e 151 SMART SM00100 15 136 4.3E-15 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_CH04217 d3661ad02e50de713dbe38e9c4ede95e 151 SUPERFAMILY SSF51206 9 139 2.75E-29 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like AMJ96_CH04217 d3661ad02e50de713dbe38e9c4ede95e 151 Gene3D G3DSA:2.60.120.10 2 147 1.7E-29 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH04217 d3661ad02e50de713dbe38e9c4ede95e 151 Pfam PF00027 Cyclic nucleotide-binding domain 34 121 1.8E-18 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_PB00076 0d5215eaa0d1c0a48d0b2ff259fb90b1 135 Pfam PF01527 Transposase 13 58 1.5E-14 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMJ96_PB00076 0d5215eaa0d1c0a48d0b2ff259fb90b1 135 SUPERFAMILY SSF48295 11 58 8.37E-10 T 12-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMJ96_PB00152 0d5215eaa0d1c0a48d0b2ff259fb90b1 135 Pfam PF01527 Transposase 13 58 1.5E-14 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMJ96_PB00152 0d5215eaa0d1c0a48d0b2ff259fb90b1 135 SUPERFAMILY SSF48295 11 58 8.37E-10 T 12-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMJ96_CH02667 0d5215eaa0d1c0a48d0b2ff259fb90b1 135 Pfam PF01527 Transposase 13 58 1.5E-14 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMJ96_CH02667 0d5215eaa0d1c0a48d0b2ff259fb90b1 135 SUPERFAMILY SSF48295 11 58 8.37E-10 T 12-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMJ96_PD00631 0d5215eaa0d1c0a48d0b2ff259fb90b1 135 Pfam PF01527 Transposase 13 58 1.5E-14 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMJ96_PD00631 0d5215eaa0d1c0a48d0b2ff259fb90b1 135 SUPERFAMILY SSF48295 11 58 8.37E-10 T 12-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMJ96_CH04140 0c3e21a749fc9df8429600164df8151f 397 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 395 5.9E-147 T 12-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMJ96_CH04140 0c3e21a749fc9df8429600164df8151f 397 SUPERFAMILY SSF52210 251 395 4.19E-54 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMJ96_CH04140 0c3e21a749fc9df8429600164df8151f 397 PIRSF PIRSF001554 1 397 6.3E-141 T 12-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMJ96_CH04140 0c3e21a749fc9df8429600164df8151f 397 SUPERFAMILY SSF56059 1 248 2.16E-71 T 12-10-2018 AMJ96_CH04140 0c3e21a749fc9df8429600164df8151f 397 Pfam PF08442 ATP-grasp domain 2 212 1.2E-65 T 12-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMJ96_CH04140 0c3e21a749fc9df8429600164df8151f 397 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 396 40.863 T 12-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AMJ96_CH04140 0c3e21a749fc9df8429600164df8151f 397 Gene3D G3DSA:3.30.470.20 1 244 5.6E-83 T 12-10-2018 AMJ96_CH04140 0c3e21a749fc9df8429600164df8151f 397 Gene3D G3DSA:3.40.50.261 250 397 9.6E-57 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMJ96_CH04140 0c3e21a749fc9df8429600164df8151f 397 Gene3D G3DSA:3.30.1490.20 21 114 5.6E-83 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMJ96_CH04140 0c3e21a749fc9df8429600164df8151f 397 Pfam PF00549 CoA-ligase 272 391 2.2E-25 T 12-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMJ96_CH04140 0c3e21a749fc9df8429600164df8151f 397 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 267 291 - T 12-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AMJ96_CH01286 a83bf139fb2eed4e499e52bf246115f7 158 Gene3D G3DSA:2.60.40.790 35 138 2.0E-21 T 12-10-2018 IPR008978 HSP20-like chaperone AMJ96_CH01286 a83bf139fb2eed4e499e52bf246115f7 158 SUPERFAMILY SSF49764 11 137 5.58E-22 T 12-10-2018 IPR008978 HSP20-like chaperone AMJ96_CH01286 a83bf139fb2eed4e499e52bf246115f7 158 Pfam PF00011 Hsp20/alpha crystallin family 43 137 2.4E-19 T 12-10-2018 IPR002068 Alpha crystallin/Hsp20 domain AMJ96_CH03920 e3c7566b366f690a1f989e5b8599d337 158 Pfam PF13432 Tetratricopeptide repeat 80 139 1.9E-8 T 12-10-2018 AMJ96_CH03920 e3c7566b366f690a1f989e5b8599d337 158 SMART SM00028 74 107 1.6E-6 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH03920 e3c7566b366f690a1f989e5b8599d337 158 Gene3D G3DSA:1.25.40.10 47 156 1.9E-16 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03920 e3c7566b366f690a1f989e5b8599d337 158 SUPERFAMILY SSF48452 53 148 1.27E-14 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03974 ee4c84fff1f7997e84db2a3b16db5dc0 73 SUPERFAMILY SSF52833 1 71 3.12E-21 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH03974 ee4c84fff1f7997e84db2a3b16db5dc0 73 Gene3D G3DSA:3.40.30.10 1 73 1.4E-26 T 12-10-2018 AMJ96_CH03974 ee4c84fff1f7997e84db2a3b16db5dc0 73 Pfam PF00462 Glutaredoxin 3 61 2.4E-15 T 12-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AMJ96_CH03974 ee4c84fff1f7997e84db2a3b16db5dc0 73 TIGRFAM TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH 3 72 1.6E-29 T 12-10-2018 IPR011909 Glutaredoxin-like protein NrdH GO:0045454 AMJ96_CH03227 209d86b11fa20bcc0246ac36e5a33480 154 Gene3D G3DSA:3.30.1130.10 19 141 6.2E-42 T 12-10-2018 AMJ96_CH03227 209d86b11fa20bcc0246ac36e5a33480 154 TIGRFAM TIGR03139 QueF-II: 7-cyano-7-deazaguanine reductase 23 134 8.3E-45 T 12-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AMJ96_CH03227 209d86b11fa20bcc0246ac36e5a33480 154 SUPERFAMILY SSF55620 20 133 3.34E-27 T 12-10-2018 AMJ96_CH03227 209d86b11fa20bcc0246ac36e5a33480 154 PIRSF PIRSF027377 4 140 1.4E-51 T 12-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AMJ96_CH03227 209d86b11fa20bcc0246ac36e5a33480 154 Pfam PF14489 QueF-like protein 58 136 3.2E-33 T 12-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AMJ96_CH03227 209d86b11fa20bcc0246ac36e5a33480 154 Hamap MF_00818 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 154 69.062 T 12-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AMJ96_CH04333 1f4e184059846872dd1115dbca54cfa6 440 Pfam PF03572 Peptidase family S41 196 363 1.2E-56 T 12-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMJ96_CH04333 1f4e184059846872dd1115dbca54cfa6 440 Gene3D G3DSA:3.30.750.44 36 339 1.7E-98 T 12-10-2018 AMJ96_CH04333 1f4e184059846872dd1115dbca54cfa6 440 Pfam PF13180 PDZ domain 99 178 2.6E-11 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH04333 1f4e184059846872dd1115dbca54cfa6 440 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 52 370 1.8E-100 T 12-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 AMJ96_CH04333 1f4e184059846872dd1115dbca54cfa6 440 Gene3D G3DSA:2.30.42.10 99 186 1.7E-98 T 12-10-2018 AMJ96_CH04333 1f4e184059846872dd1115dbca54cfa6 440 SMART SM00228 99 170 1.2E-14 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH04333 1f4e184059846872dd1115dbca54cfa6 440 SUPERFAMILY SSF50156 90 181 1.92E-19 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 AMJ96_CH04333 1f4e184059846872dd1115dbca54cfa6 440 SUPERFAMILY SSF52096 35 368 1.42E-81 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_CH04333 1f4e184059846872dd1115dbca54cfa6 440 SMART SM00245 172 364 1.8E-82 T 12-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMJ96_CH04333 1f4e184059846872dd1115dbca54cfa6 440 Gene3D G3DSA:3.90.226.10 187 361 1.7E-98 T 12-10-2018 AMJ96_CH01452 c1ebb4654d99cb0b6ebf3f9ebb1c12fb 191 SUPERFAMILY SSF55811 60 188 1.26E-29 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_CH01452 c1ebb4654d99cb0b6ebf3f9ebb1c12fb 191 PRINTS PR00502 NUDIX hydrolase family signature 86 100 1.1E-7 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMJ96_CH01452 c1ebb4654d99cb0b6ebf3f9ebb1c12fb 191 PRINTS PR00502 NUDIX hydrolase family signature 100 115 1.1E-7 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMJ96_CH01452 c1ebb4654d99cb0b6ebf3f9ebb1c12fb 191 Gene3D G3DSA:3.90.79.10 54 191 8.0E-29 T 12-10-2018 AMJ96_CH01452 c1ebb4654d99cb0b6ebf3f9ebb1c12fb 191 Pfam PF00293 NUDIX domain 59 173 3.9E-21 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMJ96_CH01452 c1ebb4654d99cb0b6ebf3f9ebb1c12fb 191 ProSitePatterns PS00893 Nudix box signature. 91 112 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMJ96_CH01651 f2eeac302e1143e2eda43cc21b8c6034 556 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 366 413 2.0E-11 T 12-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain AMJ96_CH01651 f2eeac302e1143e2eda43cc21b8c6034 556 SUPERFAMILY SSF56281 9 422 7.6E-80 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH01651 f2eeac302e1143e2eda43cc21b8c6034 556 Gene3D G3DSA:3.40.50.10710 211 360 2.2E-151 T 12-10-2018 AMJ96_CH01651 f2eeac302e1143e2eda43cc21b8c6034 556 SMART SM00849 19 219 1.0E-24 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH01651 f2eeac302e1143e2eda43cc21b8c6034 556 Gene3D G3DSA:3.10.20.580 450 556 1.1E-7 T 12-10-2018 AMJ96_CH01651 f2eeac302e1143e2eda43cc21b8c6034 556 Pfam PF12706 Beta-lactamase superfamily domain 35 169 6.6E-14 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH01651 f2eeac302e1143e2eda43cc21b8c6034 556 Gene3D G3DSA:3.60.15.10 10 439 2.2E-151 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_PD00378 beb44c672baa471b5e5c3448e9bd17ec 347 SUPERFAMILY SSF143865 21 273 1.31E-65 T 12-10-2018 AMJ96_PD00378 beb44c672baa471b5e5c3448e9bd17ec 347 SUPERFAMILY SSF144083 283 345 9.15E-18 T 12-10-2018 AMJ96_PD00378 beb44c672baa471b5e5c3448e9bd17ec 347 Gene3D G3DSA:1.20.58.340 157 269 4.2E-28 T 12-10-2018 AMJ96_PD00378 beb44c672baa471b5e5c3448e9bd17ec 347 Gene3D G3DSA:3.30.460.20 26 156 1.8E-26 T 12-10-2018 AMJ96_PD00378 beb44c672baa471b5e5c3448e9bd17ec 347 Pfam PF01544 CorA-like Mg2+ transporter protein 57 343 5.5E-58 T 12-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 AMJ96_PD00378 beb44c672baa471b5e5c3448e9bd17ec 347 Gene3D G3DSA:1.20.58.340 290 347 3.5E-21 T 12-10-2018 AMJ96_CH03205 56ee7153d0bb79767bcd886a6a14d129 303 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 188 212 - T 12-10-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMJ96_CH03205 56ee7153d0bb79767bcd886a6a14d129 303 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 15 303 52.509 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMJ96_CH03205 56ee7153d0bb79767bcd886a6a14d129 303 SUPERFAMILY SSF102886 13 303 1.83E-110 T 12-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMJ96_CH03205 56ee7153d0bb79767bcd886a6a14d129 303 PRINTS PR00073 Coprogen oxidase signature 53 69 5.6E-55 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMJ96_CH03205 56ee7153d0bb79767bcd886a6a14d129 303 PRINTS PR00073 Coprogen oxidase signature 260 287 5.6E-55 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMJ96_CH03205 56ee7153d0bb79767bcd886a6a14d129 303 PRINTS PR00073 Coprogen oxidase signature 71 92 5.6E-55 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMJ96_CH03205 56ee7153d0bb79767bcd886a6a14d129 303 PRINTS PR00073 Coprogen oxidase signature 113 137 5.6E-55 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMJ96_CH03205 56ee7153d0bb79767bcd886a6a14d129 303 PRINTS PR00073 Coprogen oxidase signature 184 213 5.6E-55 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMJ96_CH03205 56ee7153d0bb79767bcd886a6a14d129 303 PRINTS PR00073 Coprogen oxidase signature 288 303 5.6E-55 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMJ96_CH03205 56ee7153d0bb79767bcd886a6a14d129 303 Pfam PF01218 Coproporphyrinogen III oxidase 23 302 6.6E-87 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMJ96_CH03205 56ee7153d0bb79767bcd886a6a14d129 303 PIRSF PIRSF000166 3 303 9.5E-108 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMJ96_CH03205 56ee7153d0bb79767bcd886a6a14d129 303 Gene3D G3DSA:3.40.1500.10 8 303 8.9E-100 T 12-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AMJ96_CH02213 e6ce73908f063e98939b7e8029da83d4 272 SUPERFAMILY SSF56281 6 267 8.52E-46 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH02213 e6ce73908f063e98939b7e8029da83d4 272 SMART SM00849 38 217 1.9E-5 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH02213 e6ce73908f063e98939b7e8029da83d4 272 Gene3D G3DSA:3.60.15.10 4 268 9.0E-72 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH02213 e6ce73908f063e98939b7e8029da83d4 272 Pfam PF12706 Beta-lactamase superfamily domain 54 240 1.8E-36 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH00728 573d538ed5daf5ff79b7360b388a5c0f 695 Gene3D G3DSA:1.10.8.540 504 593 1.9E-21 T 12-10-2018 AMJ96_CH00728 573d538ed5daf5ff79b7360b388a5c0f 695 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 17 694 7.2E-266 T 12-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 AMJ96_CH00728 573d538ed5daf5ff79b7360b388a5c0f 695 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 239 253 1.2E-50 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMJ96_CH00728 573d538ed5daf5ff79b7360b388a5c0f 695 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 72 91 1.2E-50 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMJ96_CH00728 573d538ed5daf5ff79b7360b388a5c0f 695 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 139 155 1.2E-50 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMJ96_CH00728 573d538ed5daf5ff79b7360b388a5c0f 695 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 158 176 1.2E-50 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMJ96_CH00728 573d538ed5daf5ff79b7360b388a5c0f 695 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 188 205 1.2E-50 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMJ96_CH00728 573d538ed5daf5ff79b7360b388a5c0f 695 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 35 48 1.2E-50 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMJ96_CH00728 573d538ed5daf5ff79b7360b388a5c0f 695 PIRSF PIRSF005419 9 695 1.3E-212 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMJ96_CH00728 573d538ed5daf5ff79b7360b388a5c0f 695 Gene3D G3DSA:1.10.490.80 594 694 4.2E-12 T 12-10-2018 AMJ96_CH00728 573d538ed5daf5ff79b7360b388a5c0f 695 Pfam PF00771 FHIPEP family 28 686 1.2E-234 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMJ96_CH00728 573d538ed5daf5ff79b7360b388a5c0f 695 Gene3D G3DSA:3.40.30.60 362 503 4.0E-30 T 12-10-2018 AMJ96_CH00493 e91593a76aeccd773ebff22ca94684fe 229 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 229 29.884 T 12-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMJ96_CH00493 e91593a76aeccd773ebff22ca94684fe 229 SUPERFAMILY SSF53271 18 221 2.36E-45 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like AMJ96_CH00493 e91593a76aeccd773ebff22ca94684fe 229 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 19 180 6.2E-34 T 12-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AMJ96_CH00493 e91593a76aeccd773ebff22ca94684fe 229 Gene3D G3DSA:3.40.50.2020 3 227 8.1E-66 T 12-10-2018 AMJ96_CH00493 e91593a76aeccd773ebff22ca94684fe 229 Pfam PF00156 Phosphoribosyl transferase domain 55 154 7.5E-16 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMJ96_CH03750 d69b72ef4b6eac027e868130e86bb848 73 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 72 27.706 T 12-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH03750 d69b72ef4b6eac027e868130e86bb848 73 Pfam PF01197 Ribosomal protein L31 1 69 8.0E-28 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH03750 d69b72ef4b6eac027e868130e86bb848 73 SUPERFAMILY SSF143800 1 71 2.47E-23 T 12-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH03750 d69b72ef4b6eac027e868130e86bb848 73 Gene3D G3DSA:2.30.170.50 1 72 1.0E-24 T 12-10-2018 AMJ96_CH03750 d69b72ef4b6eac027e868130e86bb848 73 ProSitePatterns PS01143 Ribosomal protein L31 signature. 38 60 - T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH03750 d69b72ef4b6eac027e868130e86bb848 73 PRINTS PR01249 Ribosomal protein L31 signature 50 68 1.6E-9 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH03750 d69b72ef4b6eac027e868130e86bb848 73 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.6E-9 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH03750 d69b72ef4b6eac027e868130e86bb848 73 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 70 7.0E-34 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01279 10ff509410e4e5a93cee51c563c98bb0 90 Pfam PF06233 Usg-like family 10 89 2.1E-41 T 12-10-2018 IPR009354 Usg-like AMJ96_PA00294 19fb05782f5177722c763b24ca6305e5 422 Gene3D G3DSA:1.10.400.20 287 418 2.9E-41 T 12-10-2018 AMJ96_PA00294 19fb05782f5177722c763b24ca6305e5 422 TIGRFAM TIGR02810 agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 7 418 1.4E-182 T 12-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 AMJ96_PA00294 19fb05782f5177722c763b24ca6305e5 422 Pfam PF08013 Tagatose 6 phosphate kinase 5 418 1.4E-177 T 12-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 AMJ96_PA00294 19fb05782f5177722c763b24ca6305e5 422 SUPERFAMILY SSF51569 6 419 7.14E-151 T 12-10-2018 AMJ96_PA00294 19fb05782f5177722c763b24ca6305e5 422 PIRSF PIRSF009264 1 422 1.1E-178 T 12-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 AMJ96_PA00294 19fb05782f5177722c763b24ca6305e5 422 Gene3D G3DSA:3.20.20.70 18 286 1.2E-112 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH00413 dbddde55556f2309f8147b6f19767997 364 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 162 273 9.2E-10 T 12-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 AMJ96_CH00413 dbddde55556f2309f8147b6f19767997 364 Gene3D G3DSA:2.60.40.1180 78 143 1.2E-115 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta AMJ96_CH00413 dbddde55556f2309f8147b6f19767997 364 SUPERFAMILY SSF53335 69 335 3.97E-55 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH00413 dbddde55556f2309f8147b6f19767997 364 Gene3D G3DSA:3.40.50.150 144 361 1.2E-115 T 12-10-2018 AMJ96_CH00469 a0bf2d7e2b81c45ec787513dbcb1c4df 416 Gene3D G3DSA:3.30.9.10 138 358 4.3E-49 T 12-10-2018 AMJ96_CH00469 a0bf2d7e2b81c45ec787513dbcb1c4df 416 Gene3D G3DSA:3.50.50.60 114 399 4.3E-49 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH00469 a0bf2d7e2b81c45ec787513dbcb1c4df 416 SUPERFAMILY SSF51905 7 416 8.42E-49 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH00469 a0bf2d7e2b81c45ec787513dbcb1c4df 416 Gene3D G3DSA:3.50.50.60 4 67 2.6E-14 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH00469 a0bf2d7e2b81c45ec787513dbcb1c4df 416 Pfam PF01266 FAD dependent oxidoreductase 8 397 7.9E-55 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_CH00469 a0bf2d7e2b81c45ec787513dbcb1c4df 416 SUPERFAMILY SSF54373 274 359 1.18E-9 T 12-10-2018 AMJ96_CH02768 6b9168513ea7e7739f7e35a3c7a45390 379 Pfam PF02687 FtsX-like permease family 287 377 2.1E-6 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AMJ96_CH02768 6b9168513ea7e7739f7e35a3c7a45390 379 Pfam PF12704 MacB-like periplasmic core domain 21 227 3.3E-8 T 12-10-2018 IPR025857 MacB-like periplasmic core domain AMJ96_PB00338 95afd3af5cd0207bfbf52b8ef22f9750 102 PRINTS PR00359 B-class P450 signature 55 64 3.0E-5 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00338 95afd3af5cd0207bfbf52b8ef22f9750 102 PRINTS PR00359 B-class P450 signature 64 75 3.0E-5 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00338 95afd3af5cd0207bfbf52b8ef22f9750 102 PRINTS PR00359 B-class P450 signature 34 49 3.0E-5 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00338 95afd3af5cd0207bfbf52b8ef22f9750 102 Gene3D G3DSA:1.10.630.10 34 100 4.8E-12 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00338 95afd3af5cd0207bfbf52b8ef22f9750 102 SUPERFAMILY SSF48264 38 91 3.41E-10 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH02562 8b9a5d42386d71ff551a2c686091da36 489 SUPERFAMILY SSF52540 1 239 4.83E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02562 8b9a5d42386d71ff551a2c686091da36 489 Gene3D G3DSA:3.40.50.300 1 243 7.8E-52 T 12-10-2018 AMJ96_CH02562 8b9a5d42386d71ff551a2c686091da36 489 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 253 437 6.5E-55 T 12-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 AMJ96_CH02562 8b9a5d42386d71ff551a2c686091da36 489 SUPERFAMILY SSF52317 253 446 3.67E-38 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH02562 8b9a5d42386d71ff551a2c686091da36 489 Gene3D G3DSA:3.40.50.880 253 422 1.6E-18 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH02562 8b9a5d42386d71ff551a2c686091da36 489 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 486 194.83 T 12-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 AMJ96_CH02562 8b9a5d42386d71ff551a2c686091da36 489 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 237 5.1E-20 T 12-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AMJ96_CH02562 8b9a5d42386d71ff551a2c686091da36 489 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 5 476 7.8E-133 T 12-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 AMJ96_CH00538 b1b44d6b77c5a00d89cb244e4d20cf48 363 Pfam PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) 5 362 5.2E-175 T 12-10-2018 IPR010550 Deoxycytidine triphosphate deaminase, bacterial GO:0008829|GO:0009394 AMJ96_CH00538 b1b44d6b77c5a00d89cb244e4d20cf48 363 Gene3D G3DSA:2.70.40.10 168 339 7.8E-65 T 12-10-2018 IPR036157 dUTPase-like superfamily AMJ96_CH00538 b1b44d6b77c5a00d89cb244e4d20cf48 363 Gene3D G3DSA:2.70.40.10 1 167 2.4E-54 T 12-10-2018 IPR036157 dUTPase-like superfamily AMJ96_CH00538 b1b44d6b77c5a00d89cb244e4d20cf48 363 SUPERFAMILY SSF51283 198 335 9.55E-21 T 12-10-2018 IPR036157 dUTPase-like superfamily AMJ96_CH00538 b1b44d6b77c5a00d89cb244e4d20cf48 363 SUPERFAMILY SSF51283 7 165 4.97E-31 T 12-10-2018 IPR036157 dUTPase-like superfamily AMJ96_CH04170 ae04781be46249eafd7cc7b8786d370f 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 47 70 1.5E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH04170 ae04781be46249eafd7cc7b8786d370f 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 39 1.5E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH04170 ae04781be46249eafd7cc7b8786d370f 200 SUPERFAMILY SSF46689 16 82 5.2E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH04170 ae04781be46249eafd7cc7b8786d370f 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 71 8.1E-12 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH04170 ae04781be46249eafd7cc7b8786d370f 200 Gene3D G3DSA:1.10.357.10 7 193 5.8E-20 T 12-10-2018 AMJ96_CH00263 e5521fea10935141b4561f8f2d6d31b7 341 PRINTS PR01270 Histone deacetylase superfamily signature 155 178 5.5E-11 T 12-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMJ96_CH00263 e5521fea10935141b4561f8f2d6d31b7 341 PRINTS PR01270 Histone deacetylase superfamily signature 188 203 5.5E-11 T 12-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMJ96_CH00263 e5521fea10935141b4561f8f2d6d31b7 341 PRINTS PR01270 Histone deacetylase superfamily signature 274 284 5.5E-11 T 12-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMJ96_CH00263 e5521fea10935141b4561f8f2d6d31b7 341 Pfam PF00850 Histone deacetylase domain 49 338 3.6E-55 T 12-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMJ96_CH00263 e5521fea10935141b4561f8f2d6d31b7 341 SUPERFAMILY SSF52768 2 339 2.06E-80 T 12-10-2018 IPR023696 Ureohydrolase domain superfamily AMJ96_CH00263 e5521fea10935141b4561f8f2d6d31b7 341 Gene3D G3DSA:3.40.800.20 1 341 6.2E-120 T 12-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMJ96_PC00107 79c9018fa9a65e843b101231e304677b 378 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 190 377 4.0E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00107 79c9018fa9a65e843b101231e304677b 378 SUPERFAMILY SSF161098 170 362 7.52E-17 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00107 79c9018fa9a65e843b101231e304677b 378 Gene3D G3DSA:1.10.3720.10 161 376 6.4E-13 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00107 79c9018fa9a65e843b101231e304677b 378 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 26 76 2.5E-12 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMJ96_CH02132 cd71bc2bcd510e87689c6543aaebe752 430 Gene3D G3DSA:2.40.50.100 91 254 2.2E-73 T 12-10-2018 AMJ96_CH02132 cd71bc2bcd510e87689c6543aaebe752 430 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 81 326 1.7E-19 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMJ96_CH02132 cd71bc2bcd510e87689c6543aaebe752 430 Gene3D G3DSA:2.40.420.20 75 422 2.2E-73 T 12-10-2018 AMJ96_CH02132 cd71bc2bcd510e87689c6543aaebe752 430 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 72 349 3.7E-47 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMJ96_CH02132 cd71bc2bcd510e87689c6543aaebe752 430 SUPERFAMILY SSF111369 80 330 6.41E-25 T 12-10-2018 AMJ96_CH02132 cd71bc2bcd510e87689c6543aaebe752 430 Gene3D G3DSA:2.40.30.170 80 333 2.2E-73 T 12-10-2018 AMJ96_CH02132 cd71bc2bcd510e87689c6543aaebe752 430 Gene3D G3DSA:1.10.287.470 125 216 2.2E-73 T 12-10-2018 AMJ96_CH00442 6f270ddf8bd7d99914d5221ac9ed8d80 358 SMART SM00342 98 179 9.5E-11 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH00442 6f270ddf8bd7d99914d5221ac9ed8d80 358 SUPERFAMILY SSF46767 265 345 4.32E-28 T 12-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 AMJ96_CH00442 6f270ddf8bd7d99914d5221ac9ed8d80 358 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 267 346 2.3E-28 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AMJ96_CH00442 6f270ddf8bd7d99914d5221ac9ed8d80 358 Gene3D G3DSA:3.30.160.70 185 261 1.4E-10 T 12-10-2018 AMJ96_CH00442 6f270ddf8bd7d99914d5221ac9ed8d80 358 Gene3D G3DSA:1.10.10.60 82 182 2.2E-12 T 12-10-2018 AMJ96_CH00442 6f270ddf8bd7d99914d5221ac9ed8d80 358 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 316 322 - T 12-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AMJ96_CH00442 6f270ddf8bd7d99914d5221ac9ed8d80 358 Gene3D G3DSA:3.40.10.10 7 75 9.7E-26 T 12-10-2018 IPR035451 Ada-like domain superfamily AMJ96_CH00442 6f270ddf8bd7d99914d5221ac9ed8d80 358 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 266 345 1.2E-31 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AMJ96_CH00442 6f270ddf8bd7d99914d5221ac9ed8d80 358 SUPERFAMILY SSF57884 3 78 4.71E-30 T 12-10-2018 IPR035451 Ada-like domain superfamily AMJ96_CH00442 6f270ddf8bd7d99914d5221ac9ed8d80 358 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 188 262 2.6E-4 T 12-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AMJ96_CH00442 6f270ddf8bd7d99914d5221ac9ed8d80 358 Pfam PF02805 Metal binding domain of Ada 11 73 1.3E-26 T 12-10-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 AMJ96_CH00442 6f270ddf8bd7d99914d5221ac9ed8d80 358 Pfam PF12833 Helix-turn-helix domain 110 176 2.7E-14 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH00442 6f270ddf8bd7d99914d5221ac9ed8d80 358 SUPERFAMILY SSF53155 186 270 1.02E-14 T 12-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AMJ96_CH00442 6f270ddf8bd7d99914d5221ac9ed8d80 358 PIRSF PIRSF000409 1 355 1.4E-149 T 12-10-2018 IPR016221 Bifunctional regulatory protein Ada AMJ96_CH00442 6f270ddf8bd7d99914d5221ac9ed8d80 358 Gene3D G3DSA:1.10.10.10 265 350 3.3E-32 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00223 429511bafe440450df5c10c1c66223fd 286 Gene3D G3DSA:1.10.3720.10 72 280 9.2E-20 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00223 429511bafe440450df5c10c1c66223fd 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 282 1.0E-24 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00223 429511bafe440450df5c10c1c66223fd 286 SUPERFAMILY SSF161098 77 265 3.27E-24 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02742 b89c8349977275fa8df7f2188c38c23e 217 Pfam PF13578 Methyltransferase domain 81 184 1.2E-15 T 12-10-2018 AMJ96_CH02742 b89c8349977275fa8df7f2188c38c23e 217 SUPERFAMILY SSF53335 43 189 1.19E-29 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH02742 b89c8349977275fa8df7f2188c38c23e 217 Gene3D G3DSA:3.40.50.150 27 210 5.9E-39 T 12-10-2018 AMJ96_CH01751 8b4c66b7b89e187b963d9343230342a7 438 SUPERFAMILY SSF52540 17 225 8.78E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01751 8b4c66b7b89e187b963d9343230342a7 438 Gene3D G3DSA:3.40.50.300 10 168 1.4E-42 T 12-10-2018 AMJ96_CH01751 8b4c66b7b89e187b963d9343230342a7 438 SUPERFAMILY SSF48019 248 433 2.44E-75 T 12-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AMJ96_CH01751 8b4c66b7b89e187b963d9343230342a7 438 Pfam PF12002 MgsA AAA+ ATPase C terminal 263 428 9.5E-68 T 12-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal AMJ96_CH01751 8b4c66b7b89e187b963d9343230342a7 438 Pfam PF16193 AAA C-terminal domain 187 262 7.9E-21 T 12-10-2018 IPR032423 AAA C-terminal domain AMJ96_CH01751 8b4c66b7b89e187b963d9343230342a7 438 Gene3D G3DSA:1.20.272.10 236 340 4.4E-44 T 12-10-2018 AMJ96_CH01751 8b4c66b7b89e187b963d9343230342a7 438 Gene3D G3DSA:1.10.3710.10 341 438 2.8E-33 T 12-10-2018 AMJ96_CH01751 8b4c66b7b89e187b963d9343230342a7 438 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 20 150 7.6E-15 T 12-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 AMJ96_CH01751 8b4c66b7b89e187b963d9343230342a7 438 SMART SM00382 53 169 1.3E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PB00363 9cdcb954f593b36fba4ec2926d23542c 123 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 8 78 1.2E-27 T 12-10-2018 IPR025161 Putative transposase IS4/IS5 family AMJ96_CH00685 95a9f8f887c8d4fdc6ac793ee61a24d0 561 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 5 458 1.8E-68 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMJ96_CH00685 95a9f8f887c8d4fdc6ac793ee61a24d0 561 Gene3D G3DSA:3.30.300.30 121 218 1.7E-12 T 12-10-2018 AMJ96_CH00685 95a9f8f887c8d4fdc6ac793ee61a24d0 561 Pfam PF08345 Flagellar M-ring protein C-terminal 249 415 5.0E-35 T 12-10-2018 IPR013556 Flagellar M-ring C-terminal AMJ96_CH00685 95a9f8f887c8d4fdc6ac793ee61a24d0 561 Pfam PF01514 Secretory protein of YscJ/FliF family 29 217 7.9E-58 T 12-10-2018 IPR006182 Secretory protein YscJ/FliF AMJ96_CH00685 95a9f8f887c8d4fdc6ac793ee61a24d0 561 PRINTS PR01009 Flagellar M-ring protein signature 193 211 2.3E-36 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMJ96_CH00685 95a9f8f887c8d4fdc6ac793ee61a24d0 561 PRINTS PR01009 Flagellar M-ring protein signature 120 138 2.3E-36 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMJ96_CH00685 95a9f8f887c8d4fdc6ac793ee61a24d0 561 PRINTS PR01009 Flagellar M-ring protein signature 152 166 2.3E-36 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMJ96_CH00685 95a9f8f887c8d4fdc6ac793ee61a24d0 561 PRINTS PR01009 Flagellar M-ring protein signature 339 363 2.3E-36 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMJ96_CH00685 95a9f8f887c8d4fdc6ac793ee61a24d0 561 PRINTS PR01009 Flagellar M-ring protein signature 262 280 2.3E-36 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMJ96_CH00685 95a9f8f887c8d4fdc6ac793ee61a24d0 561 PIRSF PIRSF004862 1 561 4.2E-124 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AMJ96_CH03356 ce91476c98d7b1435d64b5e3caf71f5f 367 Pfam PF14462 Prokaryotic E2 family E 242 362 3.2E-37 T 12-10-2018 IPR025701 Ubiquitin-conjugating enzyme, E2, family E AMJ96_CH03356 ce91476c98d7b1435d64b5e3caf71f5f 367 Pfam PF14452 Multiubiquitin 22 85 2.6E-7 T 12-10-2018 IPR027802 Multi-ubiquitin domain AMJ96_CH03356 ce91476c98d7b1435d64b5e3caf71f5f 367 Pfam PF14452 Multiubiquitin 90 154 6.0E-8 T 12-10-2018 IPR027802 Multi-ubiquitin domain AMJ96_CH02713 b58f4a8ea7508d70dc3595ebf2fd1aba 262 Pfam PF05988 Bacterial protein of unknown function (DUF899) 14 232 1.0E-79 T 12-10-2018 IPR010296 Protein of unknown function DUF899, thioredoxin-like AMJ96_CH02713 b58f4a8ea7508d70dc3595ebf2fd1aba 262 SUPERFAMILY SSF52833 94 186 2.61E-5 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH02117 c24aadfa102298d664b3646186470cf2 531 Gene3D G3DSA:3.10.105.10 284 504 2.0E-108 T 12-10-2018 AMJ96_CH02117 c24aadfa102298d664b3646186470cf2 531 Gene3D G3DSA:3.40.190.10 205 516 2.0E-108 T 12-10-2018 AMJ96_CH02117 c24aadfa102298d664b3646186470cf2 531 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 74 438 1.5E-77 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_CH02117 c24aadfa102298d664b3646186470cf2 531 Gene3D G3DSA:3.90.76.10 44 204 2.0E-108 T 12-10-2018 AMJ96_CH02117 c24aadfa102298d664b3646186470cf2 531 SUPERFAMILY SSF53850 27 526 2.72E-106 T 12-10-2018 AMJ96_CH02117 c24aadfa102298d664b3646186470cf2 531 PIRSF PIRSF002741 12 531 1.5E-77 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_PD00537 ebff9ebf990154df415f4ed8116534f3 437 Gene3D G3DSA:3.40.190.10 52 419 5.8E-137 T 12-10-2018 AMJ96_PD00537 ebff9ebf990154df415f4ed8116534f3 437 Pfam PF13379 NMT1-like family 46 305 3.8E-104 T 12-10-2018 AMJ96_PD00537 ebff9ebf990154df415f4ed8116534f3 437 SUPERFAMILY SSF53850 52 295 1.63E-22 T 12-10-2018 AMJ96_PD00537 ebff9ebf990154df415f4ed8116534f3 437 Gene3D G3DSA:3.40.190.10 146 424 5.8E-137 T 12-10-2018 AMJ96_PC00245 c03bd8c1295b5f55a70086245ed38503 159 ProDom PD003655 COPPER ELECTRON AZURIN METAL-BINDING PERIPLASMIC PRECURSOR SIGNAL SEQUENCING DIRECT MEMBRANE 106 155 2.0E-4 T 12-10-2018 AMJ96_PC00245 c03bd8c1295b5f55a70086245ed38503 159 ProSitePatterns PS00079 Multicopper oxidases signature 1. 134 154 - T 12-10-2018 IPR033138 Multicopper oxidases, conserved site AMJ96_PC00245 c03bd8c1295b5f55a70086245ed38503 159 Gene3D G3DSA:2.60.40.420 30 157 4.5E-27 T 12-10-2018 IPR008972 Cupredoxin AMJ96_PC00245 c03bd8c1295b5f55a70086245ed38503 159 SUPERFAMILY SSF49503 48 156 9.99E-28 T 12-10-2018 IPR008972 Cupredoxin AMJ96_PC00245 c03bd8c1295b5f55a70086245ed38503 159 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 52 156 1.0E-9 T 12-10-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 AMJ96_CH03129 214717b78961f10eba2988d5e9323c51 342 SUPERFAMILY SSF50129 1 169 8.98E-56 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_CH03129 214717b78961f10eba2988d5e9323c51 342 SMART SM00829 10 337 1.8E-5 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_CH03129 214717b78961f10eba2988d5e9323c51 342 SUPERFAMILY SSF51735 134 306 4.21E-34 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03129 214717b78961f10eba2988d5e9323c51 342 Gene3D G3DSA:3.40.50.720 148 286 3.6E-120 T 12-10-2018 AMJ96_CH03129 214717b78961f10eba2988d5e9323c51 342 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 128 4.4E-36 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_CH03129 214717b78961f10eba2988d5e9323c51 342 Pfam PF00107 Zinc-binding dehydrogenase 171 289 5.7E-24 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_CH03129 214717b78961f10eba2988d5e9323c51 342 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 57 71 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMJ96_CH03129 214717b78961f10eba2988d5e9323c51 342 Gene3D G3DSA:3.90.180.10 15 321 3.6E-120 T 12-10-2018 AMJ96_CH03409 68558e07e373b83d4b94085ae6ffe6fc 614 SUPERFAMILY SSF46894 3 72 7.82E-5 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH03409 68558e07e373b83d4b94085ae6ffe6fc 614 SUPERFAMILY SSF48452 436 583 1.38E-17 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03409 68558e07e373b83d4b94085ae6ffe6fc 614 Gene3D G3DSA:1.25.40.10 344 587 9.9E-21 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03000 d8a75375a9679f675a0980b8c69dd86d 196 SMART SM00479 2 166 1.8E-16 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMJ96_CH03000 d8a75375a9679f675a0980b8c69dd86d 196 Gene3D G3DSA:3.30.420.10 2 170 2.0E-33 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_CH03000 d8a75375a9679f675a0980b8c69dd86d 196 SUPERFAMILY SSF53098 2 164 1.77E-35 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_CH03000 d8a75375a9679f675a0980b8c69dd86d 196 Pfam PF00929 Exonuclease 4 155 7.4E-15 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMJ96_CH03506 4ec2ebd0336d8594011654dc9833c828 189 Pfam PF04480 Protein of unknown function (DUF559) 67 169 7.5E-37 T 12-10-2018 IPR007569 Protein of unknown function DUF559 AMJ96_CH03506 4ec2ebd0336d8594011654dc9833c828 189 SUPERFAMILY SSF52980 67 174 1.23E-18 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMJ96_CH03506 4ec2ebd0336d8594011654dc9833c828 189 Gene3D G3DSA:3.40.960.10 73 172 1.5E-29 T 12-10-2018 AMJ96_CH04033 3c13a38d6526f663101ab77b34fb7ddc 260 Gene3D G3DSA:1.20.1540.10 11 220 2.3E-32 T 12-10-2018 IPR035952 Rhomboid-like superfamily AMJ96_CH04033 3c13a38d6526f663101ab77b34fb7ddc 260 SUPERFAMILY SSF144091 14 219 4.45E-43 T 12-10-2018 AMJ96_CH04033 3c13a38d6526f663101ab77b34fb7ddc 260 Pfam PF01694 Rhomboid family 72 218 2.1E-38 T 12-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AMJ96_PC00429 f826f8beb91dc4fcf05e8e143f5ecc33 225 Gene3D G3DSA:2.60.120.10 106 215 1.4E-19 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PC00429 f826f8beb91dc4fcf05e8e143f5ecc33 225 SUPERFAMILY SSF47413 34 103 2.15E-18 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PC00429 f826f8beb91dc4fcf05e8e143f5ecc33 225 Pfam PF07883 Cupin domain 154 215 1.6E-11 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_PC00429 f826f8beb91dc4fcf05e8e143f5ecc33 225 Pfam PF01381 Helix-turn-helix 42 94 2.9E-16 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_PC00429 f826f8beb91dc4fcf05e8e143f5ecc33 225 SMART SM00530 41 96 2.3E-16 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_PC00429 f826f8beb91dc4fcf05e8e143f5ecc33 225 Gene3D G3DSA:1.10.260.40 29 105 7.2E-19 T 12-10-2018 AMJ96_PC00429 f826f8beb91dc4fcf05e8e143f5ecc33 225 SUPERFAMILY SSF51182 103 216 1.57E-25 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_PC00328 6f705e3c8bd302d219682f98c587e536 482 Pfam PF00437 Type II/IV secretion system protein 124 400 1.1E-79 T 12-10-2018 IPR001482 Type II/IV secretion system protein AMJ96_PC00328 6f705e3c8bd302d219682f98c587e536 482 Gene3D G3DSA:3.40.50.300 220 458 1.0E-69 T 12-10-2018 AMJ96_PC00328 6f705e3c8bd302d219682f98c587e536 482 SUPERFAMILY SSF52540 104 439 1.72E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00328 6f705e3c8bd302d219682f98c587e536 482 Gene3D G3DSA:3.30.450.380 55 219 1.5E-41 T 12-10-2018 AMJ96_CH03513 0c3decca617dce888cd24b91b6f5a383 396 Gene3D G3DSA:2.40.50.100 66 236 9.4E-60 T 12-10-2018 AMJ96_CH03513 0c3decca617dce888cd24b91b6f5a383 396 SUPERFAMILY SSF111369 58 311 3.14E-11 T 12-10-2018 AMJ96_CH03513 0c3decca617dce888cd24b91b6f5a383 396 Gene3D G3DSA:2.40.30.170 53 314 9.4E-60 T 12-10-2018 AMJ96_CH03513 0c3decca617dce888cd24b91b6f5a383 396 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 65 301 4.3E-15 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMJ96_CH03513 0c3decca617dce888cd24b91b6f5a383 396 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 42 386 3.3E-40 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMJ96_CH03513 0c3decca617dce888cd24b91b6f5a383 396 Gene3D G3DSA:2.40.420.20 43 372 9.4E-60 T 12-10-2018 AMJ96_CH03513 0c3decca617dce888cd24b91b6f5a383 396 Gene3D G3DSA:1.10.287.470 119 198 9.4E-60 T 12-10-2018 AMJ96_PA00176 a18da731a7efcaa9370013bcabdb3315 268 Gene3D G3DSA:3.40.190.10 124 223 7.1E-67 T 12-10-2018 AMJ96_PA00176 a18da731a7efcaa9370013bcabdb3315 268 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 263 9.9E-60 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PA00176 a18da731a7efcaa9370013bcabdb3315 268 SUPERFAMILY SSF53850 13 266 2.21E-64 T 12-10-2018 AMJ96_PA00176 a18da731a7efcaa9370013bcabdb3315 268 Gene3D G3DSA:3.40.190.10 40 262 7.1E-67 T 12-10-2018 AMJ96_PA00176 a18da731a7efcaa9370013bcabdb3315 268 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 61 74 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site AMJ96_PA00176 a18da731a7efcaa9370013bcabdb3315 268 SMART SM00062 38 266 4.6E-56 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PA00019 421b905174598cfd9b3436d9af4e30ce 284 SUPERFAMILY SSF161098 88 266 3.66E-32 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00019 421b905174598cfd9b3436d9af4e30ce 284 Gene3D G3DSA:1.10.3720.10 84 277 3.9E-26 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00019 421b905174598cfd9b3436d9af4e30ce 284 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 280 3.6E-26 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00479 4086af2fc89afe177b56f275ac810d39 334 Pfam PF13602 Zinc-binding dehydrogenase 187 330 1.1E-36 T 12-10-2018 AMJ96_CH00479 4086af2fc89afe177b56f275ac810d39 334 SMART SM00829 13 330 6.9E-36 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_CH00479 4086af2fc89afe177b56f275ac810d39 334 Gene3D G3DSA:3.90.180.10 9 330 2.2E-104 T 12-10-2018 AMJ96_CH00479 4086af2fc89afe177b56f275ac810d39 334 Gene3D G3DSA:3.40.50.720 125 301 2.2E-104 T 12-10-2018 AMJ96_CH00479 4086af2fc89afe177b56f275ac810d39 334 SUPERFAMILY SSF50129 2 150 1.03E-37 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_CH00479 4086af2fc89afe177b56f275ac810d39 334 SUPERFAMILY SSF51735 117 297 2.1E-40 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00479 4086af2fc89afe177b56f275ac810d39 334 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 91 2.4E-12 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_CH03868 c4d227d5fb68f96d7c398d9ef0bfbfa3 368 Gene3D G3DSA:3.40.190.170 37 341 1.2E-125 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily AMJ96_CH03868 c4d227d5fb68f96d7c398d9ef0bfbfa3 368 Gene3D G3DSA:3.40.190.10 156 327 1.2E-125 T 12-10-2018 AMJ96_CH03868 c4d227d5fb68f96d7c398d9ef0bfbfa3 368 PIRSF PIRSF039026 1 359 2.2E-126 T 12-10-2018 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like AMJ96_CH03868 c4d227d5fb68f96d7c398d9ef0bfbfa3 368 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 42 323 8.8E-59 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 AMJ96_PD00648 253be0f63cb3d92abcc30409e704262a 302 SUPERFAMILY SSF161098 32 290 6.54E-53 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00648 253be0f63cb3d92abcc30409e704262a 302 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 100 286 1.7E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00648 253be0f63cb3d92abcc30409e704262a 302 Gene3D G3DSA:1.10.3720.10 15 297 6.6E-58 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PB00383 4e971cfa24033ac3fc7d044bcfd9f7f5 151 TIGRFAM TIGR01985 phasin_2: phasin 21 143 4.8E-45 T 12-10-2018 IPR010234 Phasin, subfamily 2 AMJ96_PB00383 4e971cfa24033ac3fc7d044bcfd9f7f5 151 Pfam PF09361 Phasin protein 69 140 1.7E-11 T 12-10-2018 IPR018968 Phasin AMJ96_PB00232 4e971cfa24033ac3fc7d044bcfd9f7f5 151 TIGRFAM TIGR01985 phasin_2: phasin 21 143 4.8E-45 T 12-10-2018 IPR010234 Phasin, subfamily 2 AMJ96_PB00232 4e971cfa24033ac3fc7d044bcfd9f7f5 151 Pfam PF09361 Phasin protein 69 140 1.7E-11 T 12-10-2018 IPR018968 Phasin AMJ96_PD00173 e4e9c8f8f1bfab4e24f618130515a386 680 Gene3D G3DSA:3.20.20.80 37 306 9.6E-24 T 12-10-2018 AMJ96_PD00173 e4e9c8f8f1bfab4e24f618130515a386 680 Gene3D G3DSA:3.40.50.720 330 665 4.9E-91 T 12-10-2018 AMJ96_PD00173 e4e9c8f8f1bfab4e24f618130515a386 680 Pfam PF01370 NAD dependent epimerase/dehydratase family 331 592 4.9E-48 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_PD00173 e4e9c8f8f1bfab4e24f618130515a386 680 SUPERFAMILY SSF51445 20 303 1.44E-34 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_PD00173 e4e9c8f8f1bfab4e24f618130515a386 680 SUPERFAMILY SSF51735 331 662 1.31E-82 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00882 28e952cf07509ccc8f034508149cc524 633 Pfam PF02705 K+ potassium transporter 23 555 8.5E-205 T 12-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 AMJ96_CH00882 28e952cf07509ccc8f034508149cc524 633 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 14 633 33.055 T 12-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup AMJ96_CH01999 c2107a26bc6985cef08d6ba535ffcb94 281 Gene3D G3DSA:3.20.20.70 9 281 2.5E-97 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH01999 c2107a26bc6985cef08d6ba535ffcb94 281 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 26 280 5.3E-123 T 12-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMJ96_CH01999 c2107a26bc6985cef08d6ba535ffcb94 281 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 20 281 52.211 T 12-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMJ96_CH01999 c2107a26bc6985cef08d6ba535ffcb94 281 Pfam PF00793 DAHP synthetase I family 15 269 9.8E-67 T 12-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMJ96_CH01999 c2107a26bc6985cef08d6ba535ffcb94 281 SUPERFAMILY SSF51569 16 280 1.28E-103 T 12-10-2018 AMJ96_CH04276 5f8ed5b8860411c7e42e417916299259 190 Gene3D G3DSA:1.20.58.1290 76 171 8.8E-26 T 12-10-2018 AMJ96_CH04276 5f8ed5b8860411c7e42e417916299259 190 Pfam PF02559 CarD-like/TRCF domain 15 123 4.6E-17 T 12-10-2018 IPR003711 CarD-like/TRCF domain AMJ96_CH04276 5f8ed5b8860411c7e42e417916299259 190 Gene3D G3DSA:2.30.30.840 9 75 9.1E-25 T 12-10-2018 AMJ96_CH04276 5f8ed5b8860411c7e42e417916299259 190 SUPERFAMILY SSF141259 11 79 2.48E-15 T 12-10-2018 IPR036101 CarD-like/TRCF domain superfamily AMJ96_CH04276 5f8ed5b8860411c7e42e417916299259 190 SMART SM01058 14 124 2.4E-32 T 12-10-2018 IPR003711 CarD-like/TRCF domain AMJ96_CH03848 29bc418a888c415be15d0730849b53dd 182 TIGRFAM TIGR01375 soxG: sarcosine oxidase, gamma subunit family 34 178 7.1E-49 T 12-10-2018 IPR006280 Sarcosine oxidase, gamma subunit, heterotetrameric KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 AMJ96_CH03848 29bc418a888c415be15d0730849b53dd 182 Pfam PF04268 Sarcosine oxidase, gamma subunit family 40 179 1.0E-44 T 12-10-2018 IPR007375 Sarcosine oxidase, gamma subunit KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 AMJ96_CH03848 29bc418a888c415be15d0730849b53dd 182 Gene3D G3DSA:3.30.1360.120 21 178 9.0E-42 T 12-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMJ96_CH03848 29bc418a888c415be15d0730849b53dd 182 SUPERFAMILY SSF103025 68 181 7.06E-12 T 12-10-2018 AMJ96_CH03848 29bc418a888c415be15d0730849b53dd 182 Gene3D G3DSA:3.30.70.1520 28 102 9.0E-42 T 12-10-2018 AMJ96_CH02567 f954113071b3ea5e81ba3dc4df165709 202 Pfam PF01810 LysE type translocator 14 199 6.8E-39 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMJ96_CH02453 eab0edd8c5ed1bf2a9cefa57ec308330 261 Pfam PF01209 ubiE/COQ5 methyltransferase family 31 221 1.2E-19 T 12-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AMJ96_CH02453 eab0edd8c5ed1bf2a9cefa57ec308330 261 Gene3D G3DSA:3.40.50.150 1 254 6.3E-37 T 12-10-2018 AMJ96_CH02453 eab0edd8c5ed1bf2a9cefa57ec308330 261 SUPERFAMILY SSF53335 9 260 8.36E-42 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH01210 6f16eda58eebf5be42269cc54903b69d 244 SUPERFAMILY SSF141523 100 243 9.94E-30 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH01210 6f16eda58eebf5be42269cc54903b69d 244 Pfam PF03734 L,D-transpeptidase catalytic domain 105 242 8.7E-15 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMJ96_CH01210 6f16eda58eebf5be42269cc54903b69d 244 Gene3D G3DSA:2.40.440.10 77 244 1.4E-37 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH01210 6f16eda58eebf5be42269cc54903b69d 244 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 7 26 0.0011 T 12-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMJ96_CH00645 07615f1ae5587fea20289c879d5f0f10 291 Gene3D G3DSA:1.10.3720.10 77 284 2.4E-20 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00645 07615f1ae5587fea20289c879d5f0f10 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 288 4.0E-30 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00645 07615f1ae5587fea20289c879d5f0f10 291 SUPERFAMILY SSF161098 82 270 1.57E-25 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00253 06c65fc2e0de11978dee2f0f53dcc2cd 245 Pfam PF00117 Glutamine amidotransferase class-I 65 182 1.4E-10 T 12-10-2018 IPR017926 Glutamine amidotransferase AMJ96_CH00253 06c65fc2e0de11978dee2f0f53dcc2cd 245 Gene3D G3DSA:3.40.50.880 1 213 8.2E-53 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH00253 06c65fc2e0de11978dee2f0f53dcc2cd 245 SUPERFAMILY SSF52317 1 208 1.23E-42 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH03711 0012f7cf37354db5711dda156c955852 281 Gene3D G3DSA:3.60.15.10 58 277 5.2E-25 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH03711 0012f7cf37354db5711dda156c955852 281 SUPERFAMILY SSF56281 65 242 8.51E-9 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH03711 0012f7cf37354db5711dda156c955852 281 Pfam PF13483 Beta-lactamase superfamily domain 67 234 1.3E-46 T 12-10-2018 AMJ96_CH03202 e4d5a5ac932a39eb8e618c8fa7c813a6 153 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 4 153 28.411 T 12-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 AMJ96_CH03202 e4d5a5ac932a39eb8e618c8fa7c813a6 153 PIRSF PIRSF029256 3 153 9.9E-55 T 12-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 AMJ96_CH03202 e4d5a5ac932a39eb8e618c8fa7c813a6 153 Pfam PF00588 SpoU rRNA Methylase family 4 142 3.6E-30 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMJ96_CH03202 e4d5a5ac932a39eb8e618c8fa7c813a6 153 Gene3D G3DSA:3.40.1280.10 3 153 1.9E-50 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMJ96_CH03202 e4d5a5ac932a39eb8e618c8fa7c813a6 153 SUPERFAMILY SSF75217 3 150 1.96E-38 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases AMJ96_CH01431 9fed38581cf26ae05c133a4b535c738a 196 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 26 175 8.8E-36 T 12-10-2018 IPR018639 Domain of unknown function DUF2062 AMJ96_PD00136 bcab64d4a62f980d6e0f3c1275524bf3 359 SMART SM00382 26 218 7.6E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00136 bcab64d4a62f980d6e0f3c1275524bf3 359 Gene3D G3DSA:2.40.50.940 222 345 8.0E-9 T 12-10-2018 AMJ96_PD00136 bcab64d4a62f980d6e0f3c1275524bf3 359 Gene3D G3DSA:2.40.50.140 280 337 8.0E-9 T 12-10-2018 AMJ96_PD00136 bcab64d4a62f980d6e0f3c1275524bf3 359 Pfam PF00005 ABC transporter 22 159 1.3E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00136 bcab64d4a62f980d6e0f3c1275524bf3 359 SUPERFAMILY SSF50331 235 353 7.23E-19 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_PD00136 bcab64d4a62f980d6e0f3c1275524bf3 359 SUPERFAMILY SSF52540 1 241 2.73E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00136 bcab64d4a62f980d6e0f3c1275524bf3 359 Gene3D G3DSA:3.40.50.300 1 221 4.0E-47 T 12-10-2018 AMJ96_CH03631 c92aa7ee7e2d5f87a8ff99a03238393e 333 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 52 67 - T 12-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03631 c92aa7ee7e2d5f87a8ff99a03238393e 333 Pfam PF00146 NADH dehydrogenase 13 323 1.4E-122 T 12-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03631 c92aa7ee7e2d5f87a8ff99a03238393e 333 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 6 330 25.262 T 12-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH02822 f5b399716262470b6f0f7b413278920d 294 SUPERFAMILY SSF161098 55 279 2.75E-44 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02822 f5b399716262470b6f0f7b413278920d 294 Gene3D G3DSA:1.10.3720.10 51 289 1.7E-53 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02822 f5b399716262470b6f0f7b413278920d 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 282 3.2E-12 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PB00231 c8d07bad9e52fea0fb3a2769855c80d7 151 Pfam PF12728 Helix-turn-helix domain 81 124 1.6E-9 T 12-10-2018 AMJ96_PD00362 0c8448dd1210dda2911d936181c4d074 557 Pfam PF00512 His Kinase A (phospho-acceptor) domain 191 253 6.2E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PD00362 0c8448dd1210dda2911d936181c4d074 557 Pfam PF00072 Response regulator receiver domain 439 546 4.4E-16 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00362 0c8448dd1210dda2911d936181c4d074 557 Pfam PF00072 Response regulator receiver domain 6 118 7.6E-18 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00362 0c8448dd1210dda2911d936181c4d074 557 PRINTS PR00344 Bacterial sensor protein C-terminal signature 373 391 1.0E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00362 0c8448dd1210dda2911d936181c4d074 557 PRINTS PR00344 Bacterial sensor protein C-terminal signature 342 356 1.0E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00362 0c8448dd1210dda2911d936181c4d074 557 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 370 1.0E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00362 0c8448dd1210dda2911d936181c4d074 557 PRINTS PR00344 Bacterial sensor protein C-terminal signature 397 410 1.0E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00362 0c8448dd1210dda2911d936181c4d074 557 Gene3D G3DSA:3.40.50.2300 1 139 9.1E-26 T 12-10-2018 AMJ96_PD00362 0c8448dd1210dda2911d936181c4d074 557 SMART SM00388 189 255 1.1E-6 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_PD00362 0c8448dd1210dda2911d936181c4d074 557 SMART SM00448 4 118 1.8E-20 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00362 0c8448dd1210dda2911d936181c4d074 557 SMART SM00448 437 546 1.5E-16 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00362 0c8448dd1210dda2911d936181c4d074 557 Gene3D G3DSA:3.40.50.2300 434 555 6.3E-26 T 12-10-2018 AMJ96_PD00362 0c8448dd1210dda2911d936181c4d074 557 Gene3D G3DSA:3.30.565.10 256 419 9.3E-39 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PD00362 0c8448dd1210dda2911d936181c4d074 557 SUPERFAMILY SSF47384 185 252 4.51E-8 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_PD00362 0c8448dd1210dda2911d936181c4d074 557 Gene3D G3DSA:1.10.287.130 181 253 3.0E-18 T 12-10-2018 AMJ96_PD00362 0c8448dd1210dda2911d936181c4d074 557 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 297 412 1.1E-16 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PD00362 0c8448dd1210dda2911d936181c4d074 557 SUPERFAMILY SSF52172 1 164 5.41E-30 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PD00362 0c8448dd1210dda2911d936181c4d074 557 SUPERFAMILY SSF55874 246 411 7.91E-35 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PD00362 0c8448dd1210dda2911d936181c4d074 557 SMART SM00387 296 413 4.3E-24 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PD00362 0c8448dd1210dda2911d936181c4d074 557 SUPERFAMILY SSF52172 436 553 1.29E-27 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PD00372 e52119f226f377906f8ae3253de89c6c 732 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 105 732 44.695 T 12-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 AMJ96_PD00372 e52119f226f377906f8ae3253de89c6c 732 Gene3D G3DSA:2.60.40.10 11 227 4.2E-70 T 12-10-2018 IPR013783 Immunoglobulin-like fold AMJ96_PD00372 e52119f226f377906f8ae3253de89c6c 732 SUPERFAMILY SSF81296 119 226 9.57E-23 T 12-10-2018 IPR014756 Immunoglobulin E-set AMJ96_PD00372 e52119f226f377906f8ae3253de89c6c 732 SUPERFAMILY SSF51011 629 730 1.65E-26 T 12-10-2018 AMJ96_PD00372 e52119f226f377906f8ae3253de89c6c 732 Gene3D G3DSA:3.20.20.80 229 627 7.7E-164 T 12-10-2018 AMJ96_PD00372 e52119f226f377906f8ae3253de89c6c 732 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 113 730 9.9E-277 T 12-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 AMJ96_PD00372 e52119f226f377906f8ae3253de89c6c 732 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 634 730 5.9E-17 T 12-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 AMJ96_PD00372 e52119f226f377906f8ae3253de89c6c 732 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 137 211 8.4E-20 T 12-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 AMJ96_PD00372 e52119f226f377906f8ae3253de89c6c 732 Gene3D G3DSA:2.60.40.1180 629 731 1.9E-33 T 12-10-2018 IPR013780 Glycosyl hydrolase, all-beta AMJ96_PD00372 e52119f226f377906f8ae3253de89c6c 732 PIRSF PIRSF000463 14 732 9.8E-285 T 12-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 AMJ96_PD00372 e52119f226f377906f8ae3253de89c6c 732 SMART SM00642 256 599 1.8E-6 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_PD00372 e52119f226f377906f8ae3253de89c6c 732 SUPERFAMILY SSF81296 21 117 7.84E-16 T 12-10-2018 IPR014756 Immunoglobulin E-set AMJ96_PD00372 e52119f226f377906f8ae3253de89c6c 732 SUPERFAMILY SSF51445 188 625 5.16E-113 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_PD00372 e52119f226f377906f8ae3253de89c6c 732 Pfam PF00128 Alpha amylase, catalytic domain 273 352 6.3E-8 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_PC00163 20601475bf78ce22224ba374301bb9c3 256 Gene3D G3DSA:3.40.50.720 1 256 7.8E-83 T 12-10-2018 AMJ96_PC00163 20601475bf78ce22224ba374301bb9c3 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 254 9.4E-63 T 12-10-2018 AMJ96_PC00163 20601475bf78ce22224ba374301bb9c3 256 SUPERFAMILY SSF51735 11 255 7.59E-82 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00163 20601475bf78ce22224ba374301bb9c3 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 6.8E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00163 20601475bf78ce22224ba374301bb9c3 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 6.8E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00163 20601475bf78ce22224ba374301bb9c3 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 6.8E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00163 20601475bf78ce22224ba374301bb9c3 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 6.8E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00163 20601475bf78ce22224ba374301bb9c3 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 6.8E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00163 20601475bf78ce22224ba374301bb9c3 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 6.8E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00163 20601475bf78ce22224ba374301bb9c3 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 8.3E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00163 20601475bf78ce22224ba374301bb9c3 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 8.3E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00163 20601475bf78ce22224ba374301bb9c3 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 8.3E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00163 20601475bf78ce22224ba374301bb9c3 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH02921 d2e02338c2971074baf0c5c465e17a74 302 Gene3D G3DSA:1.10.10.60 188 293 9.3E-26 T 12-10-2018 AMJ96_CH02921 d2e02338c2971074baf0c5c465e17a74 302 Pfam PF06719 AraC-type transcriptional regulator N-terminus 29 180 9.2E-46 T 12-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal AMJ96_CH02921 d2e02338c2971074baf0c5c465e17a74 302 Pfam PF12833 Helix-turn-helix domain 215 289 4.6E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH02921 d2e02338c2971074baf0c5c465e17a74 302 SUPERFAMILY SSF46689 192 243 3.22E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02921 d2e02338c2971074baf0c5c465e17a74 302 SUPERFAMILY SSF46689 245 290 2.78E-6 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02921 d2e02338c2971074baf0c5c465e17a74 302 SMART SM00342 209 292 6.7E-21 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PA00036 b34364c9e78c9bc887a4787ef1ca3e77 266 Gene3D G3DSA:3.40.190.10 75 220 5.7E-17 T 12-10-2018 AMJ96_PA00036 b34364c9e78c9bc887a4787ef1ca3e77 266 Gene3D G3DSA:3.40.190.10 92 199 5.7E-17 T 12-10-2018 AMJ96_PA00036 b34364c9e78c9bc887a4787ef1ca3e77 266 SUPERFAMILY SSF53850 72 227 4.35E-16 T 12-10-2018 AMJ96_PA00036 b34364c9e78c9bc887a4787ef1ca3e77 266 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 74 246 2.4E-18 T 12-10-2018 AMJ96_PC00146 3ae8ce3a0fcbdd90d2593ce7b15798ae 250 Pfam PF01936 NYN domain 8 141 3.0E-30 T 12-10-2018 IPR021139 NYN domain, limkain-b1-type AMJ96_PC00146 3ae8ce3a0fcbdd90d2593ce7b15798ae 250 Pfam PF12872 OST-HTH/LOTUS domain 173 230 2.9E-12 T 12-10-2018 IPR025605 OST-HTH/LOTUS domain AMJ96_PC00146 3ae8ce3a0fcbdd90d2593ce7b15798ae 250 Gene3D G3DSA:1.10.10.1880 171 237 3.7E-19 T 12-10-2018 AMJ96_PC00146 3ae8ce3a0fcbdd90d2593ce7b15798ae 250 Gene3D G3DSA:3.40.50.1010 3 145 9.9E-14 T 12-10-2018 AMJ96_PD00573 7beb8191d6072c2a5c177c664e87c040 167 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 8 146 2.7E-26 T 12-10-2018 IPR002178 PTS EIIA type-2 domain AMJ96_PD00573 7beb8191d6072c2a5c177c664e87c040 167 SUPERFAMILY SSF55804 1 147 8.63E-30 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AMJ96_PD00573 7beb8191d6072c2a5c177c664e87c040 167 Gene3D G3DSA:3.40.930.10 1 153 5.8E-37 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 AMJ96_PD00573 7beb8191d6072c2a5c177c664e87c040 167 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 51 67 - T 12-10-2018 IPR002178 PTS EIIA type-2 domain AMJ96_PC00225 4bcfb0884f2890592405cf218e4021d4 160 Pfam PF01037 Lrp/AsnC ligand binding domain 74 146 4.1E-16 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMJ96_PC00225 4bcfb0884f2890592405cf218e4021d4 160 SMART SM00344 8 117 6.9E-38 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMJ96_PC00225 4bcfb0884f2890592405cf218e4021d4 160 Gene3D G3DSA:1.10.10.10 8 59 7.8E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00225 4bcfb0884f2890592405cf218e4021d4 160 SUPERFAMILY SSF46785 6 98 2.0E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00225 4bcfb0884f2890592405cf218e4021d4 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 35 54 3.2E-11 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_PC00225 4bcfb0884f2890592405cf218e4021d4 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 8 24 3.2E-11 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_PC00225 4bcfb0884f2890592405cf218e4021d4 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 24 35 3.2E-11 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_PC00225 4bcfb0884f2890592405cf218e4021d4 160 Gene3D G3DSA:3.30.70.920 61 143 1.6E-20 T 12-10-2018 AMJ96_PC00225 4bcfb0884f2890592405cf218e4021d4 160 SUPERFAMILY SSF54909 68 155 2.01E-16 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_PC00225 4bcfb0884f2890592405cf218e4021d4 160 Pfam PF13412 Winged helix-turn-helix DNA-binding 9 55 2.5E-17 T 12-10-2018 AMJ96_PC00225 4bcfb0884f2890592405cf218e4021d4 160 ProSitePatterns PS00519 AsnC-type HTH domain signature. 26 52 - T 12-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AMJ96_PC00068 ddfcca581909c40ce7dd4447a36642d2 249 Pfam PF00775 Dioxygenase 53 236 5.5E-54 T 12-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMJ96_PC00068 ddfcca581909c40ce7dd4447a36642d2 249 Pfam PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal 15 48 1.4E-15 T 12-10-2018 IPR024756 Protocatechuate 3,4-dioxygenase beta subunit, N-terminal KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|MetaCyc: PWY-6041 AMJ96_PC00068 ddfcca581909c40ce7dd4447a36642d2 249 SUPERFAMILY SSF49482 15 245 7.59E-81 T 12-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMJ96_PC00068 ddfcca581909c40ce7dd4447a36642d2 249 TIGRFAM TIGR02422 protocat_beta: protocatechuate 3,4-dioxygenase, beta subunit 22 244 4.9E-108 T 12-10-2018 IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit GO:0005506|GO:0018578|GO:0019619|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|MetaCyc: PWY-6041 AMJ96_PC00068 ddfcca581909c40ce7dd4447a36642d2 249 Gene3D G3DSA:2.60.130.10 8 245 1.2E-91 T 12-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMJ96_CH01423 26d0de2b1bbcc12d2422aaa809c0a27c 691 SUPERFAMILY SSF53955 532 680 9.15E-39 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily AMJ96_CH01423 26d0de2b1bbcc12d2422aaa809c0a27c 691 Gene3D G3DSA:1.25.40.10 224 401 2.4E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01423 26d0de2b1bbcc12d2422aaa809c0a27c 691 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 542 570 - T 12-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 AMJ96_CH01423 26d0de2b1bbcc12d2422aaa809c0a27c 691 SUPERFAMILY SSF48435 69 508 3.79E-64 T 12-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 AMJ96_CH01423 26d0de2b1bbcc12d2422aaa809c0a27c 691 Pfam PF01464 Transglycosylase SLT domain 529 635 6.3E-22 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 AMJ96_CH01423 26d0de2b1bbcc12d2422aaa809c0a27c 691 Gene3D G3DSA:1.10.530.10 524 683 9.6E-39 T 12-10-2018 AMJ96_PD00502 05b9516278a43b3d0c5528a8c86670d7 342 Pfam PF00248 Aldo/keto reductase family 18 329 4.1E-47 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_PD00502 05b9516278a43b3d0c5528a8c86670d7 342 SUPERFAMILY SSF51430 9 332 1.14E-59 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_PD00502 05b9516278a43b3d0c5528a8c86670d7 342 Gene3D G3DSA:3.20.20.100 7 331 5.7E-61 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH01486 df35058f585e466b5e134970e8bdcce6 100 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 7 96 3.1E-18 T 12-10-2018 IPR008407 Branched-chain amino acid transport, AzlD AMJ96_CH03375 102e1396aabe4e42357ee68363fda2d3 660 Gene3D G3DSA:3.20.20.140 97 528 8.4E-89 T 12-10-2018 AMJ96_CH03375 102e1396aabe4e42357ee68363fda2d3 660 Pfam PF07969 Amidohydrolase family 85 569 1.1E-116 T 12-10-2018 IPR013108 Amidohydrolase 3 AMJ96_CH03375 102e1396aabe4e42357ee68363fda2d3 660 Gene3D G3DSA:2.30.40.10 44 544 8.4E-89 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH03375 102e1396aabe4e42357ee68363fda2d3 660 SUPERFAMILY SSF51338 34 576 7.78E-25 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH03375 102e1396aabe4e42357ee68363fda2d3 660 SUPERFAMILY SSF51556 96 529 2.46E-41 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_CH03375 102e1396aabe4e42357ee68363fda2d3 660 Gene3D G3DSA:3.10.310.70 116 226 8.4E-89 T 12-10-2018 AMJ96_CH00403 e361e7054768a126f11cd9f514850421 142 SUPERFAMILY SSF55166 53 139 1.1E-13 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMJ96_CH00403 e361e7054768a126f11cd9f514850421 142 Pfam PF08291 Peptidase M15 56 132 1.5E-5 T 12-10-2018 IPR013230 Peptidase M15A, C-terminal KEGG: 00550+3.4.17.14|MetaCyc: PWY-6470 AMJ96_CH04258 4f3e2653180435c630984147178d76e5 397 Gene3D G3DSA:1.20.1250.20 207 387 1.4E-22 T 12-10-2018 AMJ96_CH04258 4f3e2653180435c630984147178d76e5 397 Pfam PF07690 Major Facilitator Superfamily 24 327 2.4E-24 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH04258 4f3e2653180435c630984147178d76e5 397 SUPERFAMILY SSF103473 12 385 8.89E-47 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH04258 4f3e2653180435c630984147178d76e5 397 Gene3D G3DSA:1.20.1250.20 17 206 2.1E-19 T 12-10-2018 AMJ96_CH02967 fface07c7f0731a06c128cf3a4f64a29 171 SUPERFAMILY SSF101738 4 118 6.28E-48 T 12-10-2018 IPR036760 SspB-like superfamily AMJ96_CH02967 fface07c7f0731a06c128cf3a4f64a29 171 Pfam PF04386 Stringent starvation protein B 11 158 6.8E-50 T 12-10-2018 IPR007481 Stringent starvation protein B AMJ96_CH02967 fface07c7f0731a06c128cf3a4f64a29 171 Gene3D G3DSA:2.30.30.220 1 120 1.9E-51 T 12-10-2018 IPR036760 SspB-like superfamily AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 Gene3D G3DSA:3.30.2090.10 703 791 3.8E-241 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 SUPERFAMILY SSF82866 787 1009 1.23E-41 T 12-10-2018 AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 SUPERFAMILY SSF82693 140 326 3.31E-20 T 12-10-2018 AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 Gene3D G3DSA:1.20.1640.10 509 1003 3.8E-241 T 12-10-2018 AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 SUPERFAMILY SSF82714 705 789 2.62E-15 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 SUPERFAMILY SSF82714 188 268 5.62E-11 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 Gene3D G3DSA:3.30.2090.10 182 271 3.8E-241 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 SUPERFAMILY SSF82693 43 138 5.41E-19 T 12-10-2018 AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 SUPERFAMILY SSF82866 293 490 3.4E-33 T 12-10-2018 AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 Gene3D G3DSA:3.30.70.1320 139 329 3.8E-241 T 12-10-2018 AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 PRINTS PR00702 Acriflavin resistance protein family signature 465 488 1.5E-25 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 PRINTS PR00702 Acriflavin resistance protein family signature 359 380 1.5E-25 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 PRINTS PR00702 Acriflavin resistance protein family signature 440 463 1.5E-25 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 PRINTS PR00702 Acriflavin resistance protein family signature 13 37 1.5E-25 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 PRINTS PR00702 Acriflavin resistance protein family signature 41 59 1.5E-25 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 PRINTS PR00702 Acriflavin resistance protein family signature 387 411 1.5E-25 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 Gene3D G3DSA:3.30.70.1430 43 799 3.8E-241 T 12-10-2018 AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 Gene3D G3DSA:3.30.70.1440 652 851 3.8E-241 T 12-10-2018 AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 Gene3D G3DSA:1.20.1640.10 14 508 3.8E-241 T 12-10-2018 AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 Pfam PF00873 AcrB/AcrD/AcrF family 7 1004 2.9E-157 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 AMJ96_PD00381 d12f73d79c92abc918838e953d72ec0c 1023 Gene3D G3DSA:3.30.70.1430 552 651 3.8E-241 T 12-10-2018 AMJ96_CH00309 ed58bb5fdec7a79e6b9b00dbbb3aff84 233 Gene3D G3DSA:1.10.10.10 1 64 1.9E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00309 ed58bb5fdec7a79e6b9b00dbbb3aff84 233 SUPERFAMILY SSF46785 1 61 3.25E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00309 ed58bb5fdec7a79e6b9b00dbbb3aff84 233 Pfam PF13280 WYL domain 140 227 4.8E-15 T 12-10-2018 IPR026881 WYL domain AMJ96_CH00309 ed58bb5fdec7a79e6b9b00dbbb3aff84 233 Pfam PF08279 HTH domain 6 59 2.1E-17 T 12-10-2018 IPR013196 Helix-turn-helix, type 11 AMJ96_PD00542 9e32311c8c942d8559c34a7ed76214f1 1329 Gene3D G3DSA:3.40.50.12780 463 865 3.0E-115 T 12-10-2018 AMJ96_PD00542 9e32311c8c942d8559c34a7ed76214f1 1329 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 495 897 8.0E-112 T 12-10-2018 IPR010071 Amino acid adenylation domain AMJ96_PD00542 9e32311c8c942d8559c34a7ed76214f1 1329 ProSitePatterns PS00455 Putative AMP-binding domain signature. 614 625 - T 12-10-2018 IPR020845 AMP-binding, conserved site AMJ96_PD00542 9e32311c8c942d8559c34a7ed76214f1 1329 SMART SM00823 Phosphopantetheine attachment site 980 1050 0.0046 T 12-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 AMJ96_PD00542 9e32311c8c942d8559c34a7ed76214f1 1329 Pfam PF00501 AMP-binding enzyme 476 873 1.2E-78 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMJ96_PD00542 9e32311c8c942d8559c34a7ed76214f1 1329 SUPERFAMILY SSF52777 26 201 6.23E-20 T 12-10-2018 AMJ96_PD00542 9e32311c8c942d8559c34a7ed76214f1 1329 SUPERFAMILY SSF53474 1046 1312 3.57E-28 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PD00542 9e32311c8c942d8559c34a7ed76214f1 1329 Gene3D G3DSA:3.40.50.1820 1057 1327 3.7E-27 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PD00542 9e32311c8c942d8559c34a7ed76214f1 1329 Gene3D G3DSA:3.30.559.10 25 383 9.7E-57 T 12-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AMJ96_PD00542 9e32311c8c942d8559c34a7ed76214f1 1329 Pfam PF00668 Condensation domain 24 450 2.6E-34 T 12-10-2018 IPR001242 Condensation domain AMJ96_PD00542 9e32311c8c942d8559c34a7ed76214f1 1329 SUPERFAMILY SSF47336 973 1046 4.32E-15 T 12-10-2018 IPR036736 ACP-like superfamily AMJ96_PD00542 9e32311c8c942d8559c34a7ed76214f1 1329 Pfam PF13193 AMP-binding enzyme C-terminal domain 881 956 7.1E-13 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMJ96_PD00542 9e32311c8c942d8559c34a7ed76214f1 1329 Gene3D G3DSA:3.30.300.30 867 970 2.7E-34 T 12-10-2018 AMJ96_PD00542 9e32311c8c942d8559c34a7ed76214f1 1329 SUPERFAMILY SSF52777 202 438 3.67E-23 T 12-10-2018 AMJ96_PD00542 9e32311c8c942d8559c34a7ed76214f1 1329 Gene3D G3DSA:1.10.1200.10 971 1053 1.3E-20 T 12-10-2018 IPR036736 ACP-like superfamily AMJ96_PD00542 9e32311c8c942d8559c34a7ed76214f1 1329 Pfam PF00550 Phosphopantetheine attachment site 982 1044 1.4E-11 T 12-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMJ96_PD00542 9e32311c8c942d8559c34a7ed76214f1 1329 SUPERFAMILY SSF56801 432 993 1.57E-141 T 12-10-2018 AMJ96_PD00542 9e32311c8c942d8559c34a7ed76214f1 1329 Gene3D G3DSA:3.30.559.30 200 440 9.7E-57 T 12-10-2018 AMJ96_PD00542 9e32311c8c942d8559c34a7ed76214f1 1329 Pfam PF00975 Thioesterase domain 1068 1155 5.9E-9 T 12-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 AMJ96_PB00196 5d4b920a7c99ef295466b39cc3a10e44 223 Gene3D G3DSA:3.10.450.230 83 223 1.5E-47 T 12-10-2018 AMJ96_PB00196 5d4b920a7c99ef295466b39cc3a10e44 223 SUPERFAMILY SSF54427 85 222 1.31E-40 T 12-10-2018 IPR032710 NTF2-like domain superfamily AMJ96_PB00196 5d4b920a7c99ef295466b39cc3a10e44 223 PIRSF PIRSF003299 1 223 3.8E-100 T 12-10-2018 IPR026264 Type IV secretion system protein VirB8/PtlE GO:0030255 AMJ96_PB00196 5d4b920a7c99ef295466b39cc3a10e44 223 Pfam PF04335 VirB8 protein 13 220 4.1E-62 T 12-10-2018 IPR007430 Bacterial virulence protein VirB8 GO:0016020 AMJ96_CH00654 b893d8de4f333d33ef87e7fca891845e 267 PIRSF PIRSF006493 1 267 2.0E-89 T 12-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMJ96_CH00654 b893d8de4f333d33ef87e7fca891845e 267 Pfam PF02735 Ku70/Ku80 beta-barrel domain 14 178 1.9E-30 T 12-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 AMJ96_CH00654 b893d8de4f333d33ef87e7fca891845e 267 Gene3D G3DSA:2.40.290.10 5 181 3.5E-15 T 12-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily AMJ96_CH00654 b893d8de4f333d33ef87e7fca891845e 267 SMART SM00559 55 184 3.0E-17 T 12-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 AMJ96_CH00654 b893d8de4f333d33ef87e7fca891845e 267 TIGRFAM TIGR02772 Ku_bact: Ku protein 5 261 4.1E-84 T 12-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMJ96_CH00654 b893d8de4f333d33ef87e7fca891845e 267 SUPERFAMILY SSF100939 3 260 1.73E-44 T 12-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily AMJ96_CH00654 b893d8de4f333d33ef87e7fca891845e 267 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 3 259 29.288 T 12-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type AMJ96_CH03218 fe80629374f5bdea293c33ea410b058b 166 SUPERFAMILY SSF55811 30 155 8.53E-26 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_CH03218 fe80629374f5bdea293c33ea410b058b 166 Gene3D G3DSA:3.90.79.10 28 156 4.4E-23 T 12-10-2018 AMJ96_CH03218 fe80629374f5bdea293c33ea410b058b 166 PRINTS PR00502 NUDIX hydrolase family signature 61 75 3.1E-5 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMJ96_CH03218 fe80629374f5bdea293c33ea410b058b 166 PRINTS PR00502 NUDIX hydrolase family signature 75 90 3.1E-5 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMJ96_CH03218 fe80629374f5bdea293c33ea410b058b 166 Pfam PF00293 NUDIX domain 38 148 7.3E-16 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMJ96_CH02704 c077639ad6864ba86feba0bbfbb501f1 390 Pfam PF07394 Protein of unknown function (DUF1501) 37 366 4.7E-36 T 12-10-2018 IPR010869 Protein of unknown function DUF1501 AMJ96_CH04267 cbb208bfb12b471ec227b1ffe43b1460 191 Pfam PF05233 PHB accumulation regulatory domain 74 113 1.9E-16 T 12-10-2018 IPR007897 PHB accumulation regulatory AMJ96_CH04267 cbb208bfb12b471ec227b1ffe43b1460 191 Pfam PF07879 PHB/PHA accumulation regulator DNA-binding domain 9 68 1.1E-30 T 12-10-2018 IPR012909 PHA accumulation regulator DNA-binding, N-terminal AMJ96_CH04267 cbb208bfb12b471ec227b1ffe43b1460 191 TIGRFAM TIGR01848 PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR 9 115 2.0E-44 T 12-10-2018 IPR010134 Polyhydroxyalkanoate synthesis repressor PhaR GO:0006355 AMJ96_PB00170 9564373979f73f6b4e379784b680bb5b 368 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMJ96_PB00170 9564373979f73f6b4e379784b680bb5b 368 Gene3D G3DSA:3.40.50.720 175 310 1.3E-140 T 12-10-2018 AMJ96_PB00170 9564373979f73f6b4e379784b680bb5b 368 Gene3D G3DSA:3.90.180.10 8 361 1.3E-140 T 12-10-2018 AMJ96_PB00170 9564373979f73f6b4e379784b680bb5b 368 SUPERFAMILY SSF50129 4 194 3.5E-56 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_PB00170 9564373979f73f6b4e379784b680bb5b 368 SMART SM00829 12 364 0.0025 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_PB00170 9564373979f73f6b4e379784b680bb5b 368 SUPERFAMILY SSF51735 160 331 1.35E-40 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PB00170 9564373979f73f6b4e379784b680bb5b 368 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 139 9.6E-23 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_PB00170 9564373979f73f6b4e379784b680bb5b 368 Pfam PF00107 Zinc-binding dehydrogenase 198 322 1.2E-24 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_CH00342 b276bd9462e1b342580af91c996e5c0e 300 Pfam PF00892 EamA-like transporter family 155 285 2.5E-17 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH00342 b276bd9462e1b342580af91c996e5c0e 300 Pfam PF00892 EamA-like transporter family 14 139 4.8E-10 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH00342 b276bd9462e1b342580af91c996e5c0e 300 SUPERFAMILY SSF103481 189 288 1.7E-13 T 12-10-2018 AMJ96_CH00342 b276bd9462e1b342580af91c996e5c0e 300 SUPERFAMILY SSF103481 39 141 1.22E-13 T 12-10-2018 AMJ96_PB00225 3d80b6e822807b1ee4e2a435e429d29f 231 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 16 119 1.7E-19 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_PB00225 3d80b6e822807b1ee4e2a435e429d29f 231 SUPERFAMILY SSF161098 17 210 3.92E-38 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PB00225 3d80b6e822807b1ee4e2a435e429d29f 231 Gene3D G3DSA:1.10.3720.10 9 226 4.6E-46 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PB00225 3d80b6e822807b1ee4e2a435e429d29f 231 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 224 1.3E-16 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00192 cffc057ab17ce56987e2a66ccdd58308 420 Gene3D G3DSA:1.20.140.10 245 417 1.5E-51 T 12-10-2018 AMJ96_PC00192 cffc057ab17ce56987e2a66ccdd58308 420 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 148 236 2.8E-8 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMJ96_PC00192 cffc057ab17ce56987e2a66ccdd58308 420 Gene3D G3DSA:1.10.540.10 37 143 1.4E-24 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMJ96_PC00192 cffc057ab17ce56987e2a66ccdd58308 420 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 51 143 5.2E-13 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMJ96_PC00192 cffc057ab17ce56987e2a66ccdd58308 420 SUPERFAMILY SSF47203 250 417 3.38E-24 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMJ96_PC00192 cffc057ab17ce56987e2a66ccdd58308 420 SUPERFAMILY SSF56645 49 243 1.57E-45 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMJ96_PC00192 cffc057ab17ce56987e2a66ccdd58308 420 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 262 395 4.0E-19 T 12-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain AMJ96_PC00192 cffc057ab17ce56987e2a66ccdd58308 420 PIRSF PIRSF016578 20 410 3.5E-29 T 12-10-2018 AMJ96_PC00192 cffc057ab17ce56987e2a66ccdd58308 420 Gene3D G3DSA:2.40.110.10 145 244 1.9E-25 T 12-10-2018 AMJ96_PC00192 cffc057ab17ce56987e2a66ccdd58308 420 TIGRFAM TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family 30 419 7.7E-179 T 12-10-2018 IPR023922 Sulphate-starvation-induced SfnB AMJ96_CH00373 7dd440aa9df578046b5efd671246b5f5 360 Gene3D G3DSA:3.40.50.720 5 339 2.3E-58 T 12-10-2018 AMJ96_CH00373 7dd440aa9df578046b5efd671246b5f5 360 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 118 338 1.5E-16 T 12-10-2018 IPR032095 Saccharopine dehydrogenase, C-terminal Reactome: R-HSA-71064 AMJ96_CH00373 7dd440aa9df578046b5efd671246b5f5 360 SUPERFAMILY SSF55347 119 343 1.57E-42 T 12-10-2018 AMJ96_CH00373 7dd440aa9df578046b5efd671246b5f5 360 SUPERFAMILY SSF51735 4 167 1.04E-14 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00373 7dd440aa9df578046b5efd671246b5f5 360 Gene3D G3DSA:3.30.360.10 119 306 2.3E-58 T 12-10-2018 AMJ96_CH00373 7dd440aa9df578046b5efd671246b5f5 360 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 6 93 1.6E-6 T 12-10-2018 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 AMJ96_CH03689 d63ee417641a22197b1b692b0adeb192 408 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 22 386 38.742 T 12-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AMJ96_CH03689 d63ee417641a22197b1b692b0adeb192 408 Gene3D G3DSA:2.30.30.280 240 299 2.2E-15 T 12-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AMJ96_CH03689 d63ee417641a22197b1b692b0adeb192 408 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 23 385 1.5E-90 T 12-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 AMJ96_CH03689 d63ee417641a22197b1b692b0adeb192 408 Gene3D G3DSA:3.40.50.620 11 234 1.1E-74 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH03689 d63ee417641a22197b1b692b0adeb192 408 Pfam PF03054 tRNA methyl transferase 23 385 1.7E-108 T 12-10-2018 AMJ96_CH03689 d63ee417641a22197b1b692b0adeb192 408 SUPERFAMILY SSF52402 22 269 4.85E-51 T 12-10-2018 AMJ96_CH03689 d63ee417641a22197b1b692b0adeb192 408 Gene3D G3DSA:2.40.30.10 300 396 1.7E-9 T 12-10-2018 AMJ96_CH01227 7f70b30719ac74e91393b05abfa2453e 509 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 12 190 1.1E-50 T 12-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH01227 7f70b30719ac74e91393b05abfa2453e 509 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 240 256 3.9E-42 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH01227 7f70b30719ac74e91393b05abfa2453e 509 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 146 159 3.9E-42 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH01227 7f70b30719ac74e91393b05abfa2453e 509 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 170 198 3.9E-42 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH01227 7f70b30719ac74e91393b05abfa2453e 509 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 331 357 3.9E-42 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH01227 7f70b30719ac74e91393b05abfa2453e 509 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 222 239 3.9E-42 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH01227 7f70b30719ac74e91393b05abfa2453e 509 PIRSF PIRSF000110 1 494 2.6E-157 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH01227 7f70b30719ac74e91393b05abfa2453e 509 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 180 186 - T 12-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH01227 7f70b30719ac74e91393b05abfa2453e 509 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 9 492 2.8E-166 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH01227 7f70b30719ac74e91393b05abfa2453e 509 Gene3D G3DSA:3.30.360.10 180 479 1.0E-159 T 12-10-2018 AMJ96_CH01227 7f70b30719ac74e91393b05abfa2453e 509 SUPERFAMILY SSF55347 185 491 6.54E-107 T 12-10-2018 AMJ96_CH01227 7f70b30719ac74e91393b05abfa2453e 509 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 8 492 77.952 T 12-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH01227 7f70b30719ac74e91393b05abfa2453e 509 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 192 491 1.9E-106 T 12-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AMJ96_CH01227 7f70b30719ac74e91393b05abfa2453e 509 SUPERFAMILY SSF51735 5 193 2.56E-50 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01227 7f70b30719ac74e91393b05abfa2453e 509 Gene3D G3DSA:3.40.50.720 11 440 1.0E-159 T 12-10-2018 AMJ96_CH01462 c481e7d04a83acb8d4da737ba44e1559 687 Gene3D G3DSA:3.10.350.10 617 664 6.2E-11 T 12-10-2018 IPR036779 LysM domain superfamily AMJ96_CH01462 c481e7d04a83acb8d4da737ba44e1559 687 Pfam PF01476 LysM domain 620 663 4.0E-8 T 12-10-2018 IPR018392 LysM domain AMJ96_CH02414 95aa1c2cea549f218604ee51f5b70b4f 405 Gene3D G3DSA:1.20.1250.20 14 196 1.8E-23 T 12-10-2018 AMJ96_CH02414 95aa1c2cea549f218604ee51f5b70b4f 405 Pfam PF12832 MFS_1 like family 32 371 1.3E-41 T 12-10-2018 IPR024989 Major facilitator superfamily associated domain AMJ96_CH02414 95aa1c2cea549f218604ee51f5b70b4f 405 SUPERFAMILY SSF103473 16 393 1.44E-42 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH02414 95aa1c2cea549f218604ee51f5b70b4f 405 PIRSF PIRSF004925 10 400 1.1E-110 T 12-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter AMJ96_CH02414 95aa1c2cea549f218604ee51f5b70b4f 405 Gene3D G3DSA:1.20.1250.20 211 398 7.8E-28 T 12-10-2018 AMJ96_CH02582 1726c199eb972b26daf78eb63f0e6933 159 Gene3D G3DSA:3.30.420.470 5 153 4.3E-16 T 12-10-2018 AMJ96_CH02582 1726c199eb972b26daf78eb63f0e6933 159 Pfam PF13358 DDE superfamily endonuclease 5 126 7.7E-33 T 12-10-2018 IPR038717 Tc1-like transposase, DDE domain AMJ96_CH02262 2eaa6ffc6a3f8664aa1c9986475bdbe8 320 Pfam PF01734 Patatin-like phospholipase 40 197 1.0E-24 T 12-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AMJ96_CH02262 2eaa6ffc6a3f8664aa1c9986475bdbe8 320 Gene3D G3DSA:3.40.1090.10 22 133 4.2E-22 T 12-10-2018 AMJ96_CH02262 2eaa6ffc6a3f8664aa1c9986475bdbe8 320 SUPERFAMILY SSF52151 34 316 1.18E-53 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMJ96_CH01772 b6b8b9c197bd50ac5c5ca7752d787928 693 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 45 64 1.6E-7 T 12-10-2018 AMJ96_CH01772 b6b8b9c197bd50ac5c5ca7752d787928 693 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 442 464 1.6E-7 T 12-10-2018 AMJ96_CH01772 b6b8b9c197bd50ac5c5ca7752d787928 693 Gene3D G3DSA:3.50.50.60 38 312 1.7E-29 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01772 b6b8b9c197bd50ac5c5ca7752d787928 693 Pfam PF00890 FAD binding domain 46 477 1.1E-26 T 12-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH01772 b6b8b9c197bd50ac5c5ca7752d787928 693 Gene3D G3DSA:3.90.700.10 405 445 5.6E-16 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 AMJ96_CH01772 b6b8b9c197bd50ac5c5ca7752d787928 693 Gene3D G3DSA:3.50.50.60 446 489 5.6E-16 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01772 b6b8b9c197bd50ac5c5ca7752d787928 693 SUPERFAMILY SSF51905 44 493 5.19E-28 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH00430 4bfd164bd80773fc8aeb6724cd322ed8 498 Pfam PF11563 Protoglobin 7 168 2.0E-39 T 12-10-2018 AMJ96_CH00430 4bfd164bd80773fc8aeb6724cd322ed8 498 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 294 450 2.9E-48 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH00430 4bfd164bd80773fc8aeb6724cd322ed8 498 SMART SM00283 236 483 3.7E-87 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH00430 4bfd164bd80773fc8aeb6724cd322ed8 498 Gene3D G3DSA:1.10.490.10 1 160 9.3E-45 T 12-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AMJ96_CH00430 4bfd164bd80773fc8aeb6724cd322ed8 498 SUPERFAMILY SSF46458 5 160 3.29E-35 T 12-10-2018 IPR009050 Globin-like superfamily AMJ96_CH00430 4bfd164bd80773fc8aeb6724cd322ed8 498 SUPERFAMILY SSF58104 203 484 4.97E-66 T 12-10-2018 AMJ96_CH00430 4bfd164bd80773fc8aeb6724cd322ed8 498 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 257 286 7.6E-41 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH00430 4bfd164bd80773fc8aeb6724cd322ed8 498 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 363 392 7.6E-41 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH00430 4bfd164bd80773fc8aeb6724cd322ed8 498 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 411 440 7.6E-41 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH00430 4bfd164bd80773fc8aeb6724cd322ed8 498 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 334 361 7.6E-41 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH00430 4bfd164bd80773fc8aeb6724cd322ed8 498 Gene3D G3DSA:1.10.287.950 184 485 2.6E-74 T 12-10-2018 AMJ96_CH01660 a4122806e253d9c8c2b83db0eef82941 430 Gene3D G3DSA:3.30.1490.100 280 385 2.5E-27 T 12-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMJ96_CH01660 a4122806e253d9c8c2b83db0eef82941 430 SUPERFAMILY SSF56672 35 274 1.42E-79 T 12-10-2018 AMJ96_CH01660 a4122806e253d9c8c2b83db0eef82941 430 Gene3D G3DSA:3.30.70.270 46 204 1.7E-49 T 12-10-2018 AMJ96_CH01660 a4122806e253d9c8c2b83db0eef82941 430 Pfam PF11799 impB/mucB/samB family C-terminal domain 279 380 6.8E-17 T 12-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMJ96_CH01660 a4122806e253d9c8c2b83db0eef82941 430 Hamap MF_01113 DNA polymerase IV [dinB]. 42 392 34.465 T 12-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 AMJ96_CH01660 a4122806e253d9c8c2b83db0eef82941 430 Gene3D G3DSA:1.10.150.20 207 275 1.4E-15 T 12-10-2018 AMJ96_CH01660 a4122806e253d9c8c2b83db0eef82941 430 Pfam PF00817 impB/mucB/samB family 48 194 9.6E-44 T 12-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMJ96_CH01660 a4122806e253d9c8c2b83db0eef82941 430 Gene3D G3DSA:2.30.40.20 62 112 1.7E-49 T 12-10-2018 AMJ96_CH01660 a4122806e253d9c8c2b83db0eef82941 430 SUPERFAMILY SSF100879 280 377 2.35E-27 T 12-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMJ96_PD00170 f02d5b42e5771dc70bae9eb8d668a087 341 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 146 249 3.4E-7 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AMJ96_PD00170 f02d5b42e5771dc70bae9eb8d668a087 341 SUPERFAMILY SSF51735 15 164 6.82E-38 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00170 f02d5b42e5771dc70bae9eb8d668a087 341 Gene3D G3DSA:3.40.50.720 20 322 2.6E-60 T 12-10-2018 AMJ96_PD00170 f02d5b42e5771dc70bae9eb8d668a087 341 Gene3D G3DSA:3.30.360.10 139 337 2.6E-60 T 12-10-2018 AMJ96_PD00170 f02d5b42e5771dc70bae9eb8d668a087 341 SUPERFAMILY SSF55347 142 305 8.24E-26 T 12-10-2018 AMJ96_PD00170 f02d5b42e5771dc70bae9eb8d668a087 341 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 18 133 7.5E-16 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_CH00748 594e89e14b3783fcb4b58cee5dc78c5f 478 SUPERFAMILY SSF54368 33 138 1.57E-19 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH00748 594e89e14b3783fcb4b58cee5dc78c5f 478 SUPERFAMILY SSF55931 141 475 2.16E-109 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AMJ96_CH00748 594e89e14b3783fcb4b58cee5dc78c5f 478 Gene3D G3DSA:3.10.20.70 32 142 7.2E-9 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH00748 594e89e14b3783fcb4b58cee5dc78c5f 478 Gene3D G3DSA:3.30.590.10 144 476 3.9E-104 T 12-10-2018 AMJ96_CH00748 594e89e14b3783fcb4b58cee5dc78c5f 478 SMART SM01230 141 397 5.3E-110 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH00748 594e89e14b3783fcb4b58cee5dc78c5f 478 Pfam PF00120 Glutamine synthetase, catalytic domain 143 472 7.2E-105 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AMJ96_CH00748 594e89e14b3783fcb4b58cee5dc78c5f 478 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 277 292 - T 12-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AMJ96_PC00269 9595f480513a28bb785a144f24dc381f 341 SUPERFAMILY SSF53850 29 337 1.09E-84 T 12-10-2018 AMJ96_PC00269 9595f480513a28bb785a144f24dc381f 341 Pfam PF13531 Bacterial extracellular solute-binding protein 43 290 2.5E-46 T 12-10-2018 AMJ96_PC00269 9595f480513a28bb785a144f24dc381f 341 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 29 336 1.9E-137 T 12-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 AMJ96_PC00269 9595f480513a28bb785a144f24dc381f 341 Gene3D G3DSA:3.40.190.10 36 306 4.2E-132 T 12-10-2018 AMJ96_PC00269 9595f480513a28bb785a144f24dc381f 341 Gene3D G3DSA:3.40.190.10 124 335 4.2E-132 T 12-10-2018 AMJ96_PC00269 9595f480513a28bb785a144f24dc381f 341 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 155 163 - T 12-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 AMJ96_CH04293 c4b6c2f47202d6e2e82940eddfa9224c 352 TIGRFAM TIGR00238 TIGR00238: KamA family protein 8 314 1.0E-78 T 12-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase AMJ96_CH04293 c4b6c2f47202d6e2e82940eddfa9224c 352 TIGRFAM TIGR03822 AblA_like_2: lysine-2,3-aminomutase-related protein 8 326 9.8E-178 T 12-10-2018 IPR022447 Lysine-2,3-aminomutase-related AMJ96_CH04293 c4b6c2f47202d6e2e82940eddfa9224c 352 SUPERFAMILY SSF102114 85 319 4.05E-31 T 12-10-2018 AMJ96_CH04293 c4b6c2f47202d6e2e82940eddfa9224c 352 Pfam PF13353 4Fe-4S single cluster domain 101 168 1.3E-5 T 12-10-2018 AMJ96_CH04293 c4b6c2f47202d6e2e82940eddfa9224c 352 Gene3D G3DSA:3.20.20.70 34 320 6.3E-100 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH04293 c4b6c2f47202d6e2e82940eddfa9224c 352 PIRSF PIRSF004911 1 350 2.5E-121 T 12-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase AMJ96_CH04293 c4b6c2f47202d6e2e82940eddfa9224c 352 Pfam PF04055 Radical SAM superfamily 102 250 1.6E-8 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMJ96_CH02894 f29f2f3fd5b9fb633aa8cdd919b25e3f 406 Gene3D G3DSA:3.40.640.10 68 294 1.2E-120 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH02894 f29f2f3fd5b9fb633aa8cdd919b25e3f 406 Pfam PF00155 Aminotransferase class I and II 62 395 4.5E-24 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_CH02894 f29f2f3fd5b9fb633aa8cdd919b25e3f 406 Gene3D G3DSA:3.90.1150.10 20 400 1.2E-120 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH02894 f29f2f3fd5b9fb633aa8cdd919b25e3f 406 SUPERFAMILY SSF53383 3 400 3.71E-91 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH01502 e27931f455f1ded55626a61d8847337a 314 Gene3D G3DSA:1.10.4030.30 33 279 8.9E-23 T 12-10-2018 AMJ96_CH01502 e27931f455f1ded55626a61d8847337a 314 Gene3D G3DSA:3.10.50.40 168 266 8.9E-23 T 12-10-2018 AMJ96_CH01502 e27931f455f1ded55626a61d8847337a 314 SUPERFAMILY SSF109998 30 197 1.18E-26 T 12-10-2018 IPR027304 Trigger factor/SurA domain superfamily AMJ96_CH00032 f363158e4611e5fa382517e5c5226a27 91 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 4 83 7.6E-29 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like AMJ96_CH00032 f363158e4611e5fa382517e5c5226a27 91 PRINTS PR00107 Phosphocarrier protein signature 15 31 4.7E-11 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like AMJ96_CH00032 f363158e4611e5fa382517e5c5226a27 91 PRINTS PR00107 Phosphocarrier protein signature 55 72 4.7E-11 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like AMJ96_CH00032 f363158e4611e5fa382517e5c5226a27 91 PRINTS PR00107 Phosphocarrier protein signature 40 55 4.7E-11 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like AMJ96_CH00032 f363158e4611e5fa382517e5c5226a27 91 Pfam PF00381 PTS HPr component phosphorylation site 5 84 8.6E-26 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like AMJ96_CH00032 f363158e4611e5fa382517e5c5226a27 91 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 15 22 - T 12-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site AMJ96_CH00032 f363158e4611e5fa382517e5c5226a27 91 SUPERFAMILY SSF55594 5 90 1.16E-27 T 12-10-2018 IPR035895 HPr-like superfamily AMJ96_CH00032 f363158e4611e5fa382517e5c5226a27 91 Gene3D G3DSA:3.30.1340.10 4 90 9.4E-29 T 12-10-2018 IPR035895 HPr-like superfamily AMJ96_CH01253 bb19bc6c24830b2fe611afaa65b60bf9 293 Gene3D G3DSA:1.10.10.10 4 88 1.7E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01253 bb19bc6c24830b2fe611afaa65b60bf9 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 63 8.4E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01253 bb19bc6c24830b2fe611afaa65b60bf9 293 Gene3D G3DSA:3.40.190.290 90 289 7.9E-67 T 12-10-2018 AMJ96_CH01253 bb19bc6c24830b2fe611afaa65b60bf9 293 SUPERFAMILY SSF53850 89 292 8.53E-48 T 12-10-2018 AMJ96_CH01253 bb19bc6c24830b2fe611afaa65b60bf9 293 Pfam PF03466 LysR substrate binding domain 87 290 5.9E-47 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH01253 bb19bc6c24830b2fe611afaa65b60bf9 293 SUPERFAMILY SSF46785 8 111 7.69E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00777 4399f19b94850ccdbb090ce1578e8026 296 Gene3D G3DSA:1.10.3720.10 83 290 2.5E-25 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00777 4399f19b94850ccdbb090ce1578e8026 296 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 12 56 3.8E-14 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMJ96_CH00777 4399f19b94850ccdbb090ce1578e8026 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 294 2.7E-33 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00777 4399f19b94850ccdbb090ce1578e8026 296 SUPERFAMILY SSF161098 88 275 1.05E-30 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00210 e5fc655e75567b4edf5c2c8cd256743d 271 SMART SM00858 46 114 3.2E-11 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMJ96_CH00210 e5fc655e75567b4edf5c2c8cd256743d 271 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 7 240 1.7E-68 T 12-10-2018 IPR017592 Pilus assembly, Flp-type CpaB AMJ96_CH00210 e5fc655e75567b4edf5c2c8cd256743d 271 Pfam PF08666 SAF domain 46 113 1.9E-6 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMJ96_CH00210 e5fc655e75567b4edf5c2c8cd256743d 271 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 121 226 2.5E-28 T 12-10-2018 IPR031571 Flp pilus assembly protein RcpC/CpaB domain AMJ96_CH01551 a45618568cb2c39e3043360b35730a86 433 SUPERFAMILY SSF47090 101 177 6.67E-16 T 12-10-2018 IPR036365 PGBD-like superfamily AMJ96_CH01551 a45618568cb2c39e3043360b35730a86 433 Pfam PF01471 Putative peptidoglycan binding domain 112 169 9.5E-10 T 12-10-2018 IPR002477 Peptidoglycan binding-like AMJ96_CH01551 a45618568cb2c39e3043360b35730a86 433 Pfam PF03734 L,D-transpeptidase catalytic domain 197 363 9.4E-24 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMJ96_CH01551 a45618568cb2c39e3043360b35730a86 433 SUPERFAMILY SSF141523 194 350 1.44E-14 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH02091 6031cf45009596cfbbf40a6deb2ea3db 129 Gene3D G3DSA:3.30.1330.40 7 128 1.8E-28 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMJ96_CH02091 6031cf45009596cfbbf40a6deb2ea3db 129 Pfam PF01042 Endoribonuclease L-PSP 13 126 5.8E-20 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 AMJ96_CH02091 6031cf45009596cfbbf40a6deb2ea3db 129 SUPERFAMILY SSF55298 1 126 3.77E-26 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMJ96_CH02913 88a8a15400ad6d055366c8312dcaaac3 242 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 7 175 1.8E-20 T 12-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 AMJ96_CH02913 88a8a15400ad6d055366c8312dcaaac3 242 SUPERFAMILY SSF51695 2 241 9.94E-46 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMJ96_CH02913 88a8a15400ad6d055366c8312dcaaac3 242 Gene3D G3DSA:3.20.20.190 1 242 2.5E-56 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMJ96_CH03372 28ee6f27e837df6bd36a25f763a87a7d 238 Pfam PF06912 Protein of unknown function (DUF1275) 8 216 9.9E-30 T 12-10-2018 IPR010699 Protein of unknown function DUF1275 AMJ96_CH03725 b824211946eaeac04d36f7a6b5d7009b 867 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 552 839 1.4E-96 T 12-10-2018 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal AMJ96_CH03725 b824211946eaeac04d36f7a6b5d7009b 867 SUPERFAMILY SSF55729 660 837 1.31E-15 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH00570 86a7aada7e499637f7a2a472af1bb067 95 Pfam PF03795 YCII-related domain 2 75 7.4E-6 T 12-10-2018 IPR005545 YCII-related AMJ96_CH00570 86a7aada7e499637f7a2a472af1bb067 95 SUPERFAMILY SSF54909 1 80 5.63E-13 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH00570 86a7aada7e499637f7a2a472af1bb067 95 Gene3D G3DSA:3.30.70.1060 3 85 6.2E-5 T 12-10-2018 AMJ96_PD00043 7371c68aa8de91f36d4784227137f999 267 SUPERFAMILY SSF51351 3 246 5.24E-74 T 12-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_PD00043 7371c68aa8de91f36d4784227137f999 267 Pfam PF00121 Triosephosphate isomerase 4 244 3.6E-73 T 12-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_PD00043 7371c68aa8de91f36d4784227137f999 267 Gene3D G3DSA:3.20.20.70 2 248 2.8E-78 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_PD00043 7371c68aa8de91f36d4784227137f999 267 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 233 1.2E-38 T 12-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_PD00043 7371c68aa8de91f36d4784227137f999 267 ProSitePatterns PS00171 Triosephosphate isomerase active site. 166 176 - T 12-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AMJ96_CH01081 e98009fdfb337360c1a628ff72cc1a23 295 SUPERFAMILY SSF46689 242 287 3.09E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH01081 e98009fdfb337360c1a628ff72cc1a23 295 Pfam PF12833 Helix-turn-helix domain 212 286 2.7E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH01081 e98009fdfb337360c1a628ff72cc1a23 295 SMART SM00342 206 289 9.8E-23 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH01081 e98009fdfb337360c1a628ff72cc1a23 295 Gene3D G3DSA:1.10.10.60 185 289 4.4E-26 T 12-10-2018 AMJ96_CH01081 e98009fdfb337360c1a628ff72cc1a23 295 Pfam PF06719 AraC-type transcriptional regulator N-terminus 27 177 5.9E-40 T 12-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal AMJ96_CH01081 e98009fdfb337360c1a628ff72cc1a23 295 SUPERFAMILY SSF46689 189 240 3.4E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PA00026 401a011d16edd478503e1cf238ac10ea 280 SUPERFAMILY SSF53474 28 274 6.54E-51 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PA00026 401a011d16edd478503e1cf238ac10ea 280 Gene3D G3DSA:3.40.50.1820 26 275 2.9E-52 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PA00026 401a011d16edd478503e1cf238ac10ea 280 PRINTS PR00111 Alpha/beta hydrolase fold signature 62 77 3.7E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PA00026 401a011d16edd478503e1cf238ac10ea 280 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 3.7E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PA00026 401a011d16edd478503e1cf238ac10ea 280 PRINTS PR00111 Alpha/beta hydrolase fold signature 120 133 3.7E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PA00026 401a011d16edd478503e1cf238ac10ea 280 Pfam PF12697 Alpha/beta hydrolase family 39 266 3.5E-20 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PC00448 f169d6955dd9659e1cb2179f6d9e668b 288 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 15 281 6.7E-98 T 12-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 AMJ96_PC00448 f169d6955dd9659e1cb2179f6d9e668b 288 PIRSF PIRSF006250 8 284 5.8E-94 T 12-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 AMJ96_PC00448 f169d6955dd9659e1cb2179f6d9e668b 288 Gene3D G3DSA:3.90.1170.20 18 279 7.7E-102 T 12-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 AMJ96_PC00448 f169d6955dd9659e1cb2179f6d9e668b 288 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 115 280 4.8E-59 T 12-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 AMJ96_PC00448 f169d6955dd9659e1cb2179f6d9e668b 288 SUPERFAMILY SSF51690 115 281 2.2E-57 T 12-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AMJ96_PC00448 f169d6955dd9659e1cb2179f6d9e668b 288 SUPERFAMILY SSF54675 3 114 2.86E-33 T 12-10-2018 AMJ96_PC00448 f169d6955dd9659e1cb2179f6d9e668b 288 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 26 113 2.2E-25 T 12-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 AMJ96_PC00448 f169d6955dd9659e1cb2179f6d9e668b 288 Gene3D G3DSA:3.20.20.70 129 271 7.7E-102 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH04027 f635346a75cac4977fe5a8ddfc3f3f5b 223 SUPERFAMILY SSF48150 40 212 2.62E-34 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AMJ96_CH04027 f635346a75cac4977fe5a8ddfc3f3f5b 223 Gene3D G3DSA:1.10.1670.40 25 210 4.5E-52 T 12-10-2018 AMJ96_CH04027 f635346a75cac4977fe5a8ddfc3f3f5b 223 Gene3D G3DSA:1.10.340.30 48 159 4.5E-52 T 12-10-2018 AMJ96_CH04027 f635346a75cac4977fe5a8ddfc3f3f5b 223 SMART SM00478 63 212 5.4E-9 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMJ96_CH04027 f635346a75cac4977fe5a8ddfc3f3f5b 223 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 57 197 6.4E-9 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AMJ96_CH00792 cdb820a5746e9efa0f88030addf25abe 439 SMART SM00382 76 267 1.2E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00792 cdb820a5746e9efa0f88030addf25abe 439 Pfam PF00005 ABC transporter 67 198 1.1E-18 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00792 cdb820a5746e9efa0f88030addf25abe 439 Pfam PF14524 Wzt C-terminal domain 282 406 5.3E-8 T 12-10-2018 IPR029439 Wzt, C-terminal AMJ96_CH00792 cdb820a5746e9efa0f88030addf25abe 439 SUPERFAMILY SSF52540 64 260 1.13E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00792 cdb820a5746e9efa0f88030addf25abe 439 Gene3D G3DSA:3.40.50.300 43 265 5.7E-41 T 12-10-2018 AMJ96_PA00006 3e6c57bc5571914bdb44320079772e19 183 Gene3D G3DSA:3.40.630.30 7 160 1.4E-22 T 12-10-2018 AMJ96_PA00006 3e6c57bc5571914bdb44320079772e19 183 Pfam PF00583 Acetyltransferase (GNAT) family 41 137 3.9E-8 T 12-10-2018 IPR000182 GNAT domain AMJ96_PA00006 3e6c57bc5571914bdb44320079772e19 183 SUPERFAMILY SSF55729 22 140 2.96E-19 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH04340 8fad685f22f5e7f29fd0a7ba8a27832d 317 PIRSF PIRSF034285 1 315 1.3E-68 T 12-10-2018 IPR017026 Inducible mutagenesis protein A AMJ96_CH04340 8fad685f22f5e7f29fd0a7ba8a27832d 317 SUPERFAMILY SSF52540 94 204 7.04E-11 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04340 8fad685f22f5e7f29fd0a7ba8a27832d 317 Gene3D G3DSA:3.40.50.300 81 205 3.7E-12 T 12-10-2018 AMJ96_CH04055 ad9deea5da3898a1dae7073203fb8bf4 246 Gene3D G3DSA:3.40.50.150 17 210 8.4E-21 T 12-10-2018 AMJ96_CH04055 ad9deea5da3898a1dae7073203fb8bf4 246 SUPERFAMILY SSF53335 87 214 4.58E-23 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH04055 ad9deea5da3898a1dae7073203fb8bf4 246 Pfam PF08241 Methyltransferase domain 87 130 1.4E-9 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMJ96_CH00862 4cb8427b82139c856e6f4a816299d602 604 SUPERFAMILY SSF51735 401 529 1.47E-27 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00862 4cb8427b82139c856e6f4a816299d602 604 Gene3D G3DSA:3.40.50.720 399 558 1.7E-30 T 12-10-2018 AMJ96_CH00862 4cb8427b82139c856e6f4a816299d602 604 Pfam PF02254 TrkA-N domain 402 512 4.1E-19 T 12-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AMJ96_CH00862 4cb8427b82139c856e6f4a816299d602 604 Pfam PF00999 Sodium/hydrogen exchanger family 13 373 1.7E-65 T 12-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMJ96_CH00862 4cb8427b82139c856e6f4a816299d602 604 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 18 285 7.3E-78 T 12-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 AMJ96_CH00862 4cb8427b82139c856e6f4a816299d602 604 Gene3D G3DSA:1.20.1530.20 5 386 3.7E-78 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily AMJ96_CH00453 7acacfee1358e21238f90a689c69b611 133 Gene3D G3DSA:3.30.230.10 12 123 1.7E-25 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMJ96_CH00453 7acacfee1358e21238f90a689c69b611 133 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 20 112 8.0E-20 T 12-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMJ96_CH00453 7acacfee1358e21238f90a689c69b611 133 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 11 122 15.012 T 12-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMJ96_CH00453 7acacfee1358e21238f90a689c69b611 133 Pfam PF00825 Ribonuclease P 16 113 6.6E-24 T 12-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMJ96_CH00453 7acacfee1358e21238f90a689c69b611 133 SUPERFAMILY SSF54211 15 116 7.33E-25 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_CH00453 7acacfee1358e21238f90a689c69b611 133 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 16 113 1.2E-17 T 12-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AMJ96_CH03047 1c8d3d3184b7a1ca54cb1480cbfec10a 318 SUPERFAMILY SSF103481 52 152 5.1E-15 T 12-10-2018 AMJ96_CH03047 1c8d3d3184b7a1ca54cb1480cbfec10a 318 Pfam PF00892 EamA-like transporter family 17 149 3.9E-15 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH03047 1c8d3d3184b7a1ca54cb1480cbfec10a 318 Pfam PF00892 EamA-like transporter family 160 297 1.3E-9 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH03047 1c8d3d3184b7a1ca54cb1480cbfec10a 318 SUPERFAMILY SSF103481 218 301 3.01E-11 T 12-10-2018 AMJ96_PD00523 d7d08210324b274f21780cf4cd5c0f1d 154 SMART SM00344 4 113 6.1E-36 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMJ96_PD00523 d7d08210324b274f21780cf4cd5c0f1d 154 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 51 1.6E-15 T 12-10-2018 AMJ96_PD00523 d7d08210324b274f21780cf4cd5c0f1d 154 SUPERFAMILY SSF54909 67 148 8.85E-18 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_PD00523 d7d08210324b274f21780cf4cd5c0f1d 154 Gene3D G3DSA:1.10.10.10 1 57 1.4E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00523 d7d08210324b274f21780cf4cd5c0f1d 154 Gene3D G3DSA:3.30.70.920 58 141 1.8E-22 T 12-10-2018 AMJ96_PD00523 d7d08210324b274f21780cf4cd5c0f1d 154 Pfam PF01037 Lrp/AsnC ligand binding domain 70 143 1.4E-21 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMJ96_PD00523 d7d08210324b274f21780cf4cd5c0f1d 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 4.6E-15 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_PD00523 d7d08210324b274f21780cf4cd5c0f1d 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 4.6E-15 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_PD00523 d7d08210324b274f21780cf4cd5c0f1d 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 4.6E-15 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_PD00523 d7d08210324b274f21780cf4cd5c0f1d 154 SUPERFAMILY SSF46785 4 59 4.29E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03564 2f325202eeea7e2a2632f0f3adb57333 396 Gene3D G3DSA:1.10.287.470 109 182 4.6E-74 T 12-10-2018 AMJ96_CH03564 2f325202eeea7e2a2632f0f3adb57333 396 SUPERFAMILY SSF111369 64 309 1.96E-65 T 12-10-2018 AMJ96_CH03564 2f325202eeea7e2a2632f0f3adb57333 396 Gene3D G3DSA:2.40.50.100 74 219 4.6E-74 T 12-10-2018 AMJ96_CH03564 2f325202eeea7e2a2632f0f3adb57333 396 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 50 386 3.0E-89 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMJ96_CH03564 2f325202eeea7e2a2632f0f3adb57333 396 Gene3D G3DSA:2.40.420.20 297 387 7.1E-22 T 12-10-2018 AMJ96_CH03564 2f325202eeea7e2a2632f0f3adb57333 396 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 76 305 2.2E-13 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMJ96_CH03564 2f325202eeea7e2a2632f0f3adb57333 396 Gene3D G3DSA:2.40.30.170 68 295 4.6E-74 T 12-10-2018 AMJ96_CH03260 75563db193618f8513289849cf24d13d 63 Pfam PF10931 Protein of unknown function (DUF2735) 9 58 6.5E-21 T 12-10-2018 IPR021232 Protein of unknown function DUF2735 AMJ96_CH01073 88d7270e403e489e729b69a6588bb198 114 Gene3D G3DSA:1.10.10.10 12 112 3.3E-12 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01073 88d7270e403e489e729b69a6588bb198 114 SMART SM00418 16 98 2.1E-8 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH01073 88d7270e403e489e729b69a6588bb198 114 SUPERFAMILY SSF46785 3 96 8.59E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01073 88d7270e403e489e729b69a6588bb198 114 Pfam PF12840 Helix-turn-helix domain 15 77 1.3E-13 T 12-10-2018 AMJ96_PD00385 e2924001ab33f11e3159c8dbe715f37d 345 Gene3D G3DSA:3.40.50.2300 84 333 2.4E-54 T 12-10-2018 AMJ96_PD00385 e2924001ab33f11e3159c8dbe715f37d 345 Gene3D G3DSA:1.10.260.40 1 48 6.6E-14 T 12-10-2018 AMJ96_PD00385 e2924001ab33f11e3159c8dbe715f37d 345 Pfam PF13377 Periplasmic binding protein-like domain 175 340 4.6E-35 T 12-10-2018 AMJ96_PD00385 e2924001ab33f11e3159c8dbe715f37d 345 SMART SM00354 4 73 9.1E-6 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00385 e2924001ab33f11e3159c8dbe715f37d 345 SUPERFAMILY SSF53822 80 344 3.64E-47 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PD00385 e2924001ab33f11e3159c8dbe715f37d 345 SUPERFAMILY SSF47413 4 50 1.13E-9 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PD00385 e2924001ab33f11e3159c8dbe715f37d 345 Gene3D G3DSA:3.40.50.2300 167 338 2.4E-54 T 12-10-2018 AMJ96_PD00385 e2924001ab33f11e3159c8dbe715f37d 345 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 48 1.1E-8 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03160 a28e384f94bc86e6a3f582f4ad6ee5f6 380 SUPERFAMILY SSF50952 28 375 6.93E-50 T 12-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AMJ96_CH03160 a28e384f94bc86e6a3f582f4ad6ee5f6 380 Gene3D G3DSA:2.120.10.30 28 374 1.2E-108 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMJ96_CH03160 a28e384f94bc86e6a3f582f4ad6ee5f6 380 Pfam PF07995 Glucose / Sorbosone dehydrogenase 43 371 2.1E-125 T 12-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase AMJ96_PB00320 3961b950fd18b8efda74019853c731eb 167 SUPERFAMILY SSF47413 43 105 5.35E-10 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PB00320 3961b950fd18b8efda74019853c731eb 167 SMART SM00530 49 104 3.8E-4 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_PB00320 3961b950fd18b8efda74019853c731eb 167 Gene3D G3DSA:1.10.260.40 40 122 8.0E-9 T 12-10-2018 AMJ96_PB00320 3961b950fd18b8efda74019853c731eb 167 Pfam PF13560 Helix-turn-helix domain 47 99 3.9E-7 T 12-10-2018 AMJ96_CH03438 dc3467ef478b1f4d61dc413919cadc93 199 Pfam PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP 48 199 3.7E-45 T 12-10-2018 IPR010319 Transglutaminase-like cysteine peptidase, predicted AMJ96_CH03438 dc3467ef478b1f4d61dc413919cadc93 199 Gene3D G3DSA:3.10.620.30 73 188 2.4E-21 T 12-10-2018 AMJ96_CH03422 4a5855c765af41485cc62c215f939a9e 294 Pfam PF00535 Glycosyl transferase family 2 4 161 2.8E-32 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_CH03422 4a5855c765af41485cc62c215f939a9e 294 Gene3D G3DSA:3.90.550.10 1 224 1.4E-40 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03422 4a5855c765af41485cc62c215f939a9e 294 SUPERFAMILY SSF53448 2 217 6.03E-48 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH04234 180cd5244c8baecd63a9641eafd8dbbf 165 Gene3D G3DSA:1.20.120.450 1 165 2.4E-54 T 12-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes AMJ96_CH04234 180cd5244c8baecd63a9641eafd8dbbf 165 Pfam PF09351 Domain of unknown function (DUF1993) 5 164 2.3E-55 T 12-10-2018 IPR018531 Protein of unknown function DUF1993 AMJ96_CH04234 180cd5244c8baecd63a9641eafd8dbbf 165 SUPERFAMILY SSF109854 4 165 1.46E-55 T 12-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes AMJ96_CH01172 35224111656f8ee1d68bdd6ba6c17446 247 PIRSF PIRSF000857 4 241 5.8E-73 T 12-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 AMJ96_CH01172 35224111656f8ee1d68bdd6ba6c17446 247 SUPERFAMILY SSF52402 10 198 7.78E-39 T 12-10-2018 AMJ96_CH01172 35224111656f8ee1d68bdd6ba6c17446 247 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 36 210 8.9E-36 T 12-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 AMJ96_CH01172 35224111656f8ee1d68bdd6ba6c17446 247 Gene3D G3DSA:3.40.50.620 7 246 5.5E-59 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH01172 35224111656f8ee1d68bdd6ba6c17446 247 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 41 234 2.1E-81 T 12-10-2018 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8 AMJ96_CH01167 5c8d1ddfdae9d274415da2ff89be5bf0 213 SUPERFAMILY SSF52833 10 192 6.35E-17 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH01167 5c8d1ddfdae9d274415da2ff89be5bf0 213 Pfam PF00578 AhpC/TSA family 13 183 6.1E-9 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMJ96_CH00400 6f1eebdb819a3b933886698426b330cd 163 Gene3D G3DSA:3.40.50.620 12 152 1.3E-16 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH00400 6f1eebdb819a3b933886698426b330cd 163 SUPERFAMILY SSF52402 14 151 5.53E-15 T 12-10-2018 AMJ96_CH00400 6f1eebdb819a3b933886698426b330cd 163 Pfam PF00582 Universal stress protein family 13 150 2.5E-18 T 12-10-2018 IPR006016 UspA AMJ96_CH03172 cc7ff06214e122122cab1d3a4af90c9e 113 SUPERFAMILY SSF50249 5 112 6.86E-30 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH03172 cc7ff06214e122122cab1d3a4af90c9e 113 Pfam PF01588 Putative tRNA binding domain 15 110 9.2E-11 T 12-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 AMJ96_CH03172 cc7ff06214e122122cab1d3a4af90c9e 113 Gene3D G3DSA:2.40.50.140 1 113 2.8E-31 T 12-10-2018 AMJ96_CH03172 cc7ff06214e122122cab1d3a4af90c9e 113 TIGRFAM TIGR02222 chap_CsaA: export-related chaperone protein CsaA 7 112 6.9E-46 T 12-10-2018 IPR008231 Probable chaperone CsaA AMJ96_CH01422 f67fc1918ae7a8caeb09ce3eef22e975 300 SUPERFAMILY SSF53474 8 282 2.42E-37 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01422 f67fc1918ae7a8caeb09ce3eef22e975 300 Gene3D G3DSA:3.40.50.1820 6 296 4.2E-56 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01422 f67fc1918ae7a8caeb09ce3eef22e975 300 Pfam PF00561 alpha/beta hydrolase fold 39 278 2.1E-9 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH03580 149c6c4f7297c36f005cc16d95b7a8d2 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 2.2E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03580 149c6c4f7297c36f005cc16d95b7a8d2 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 2.2E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03580 149c6c4f7297c36f005cc16d95b7a8d2 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 2.2E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03580 149c6c4f7297c36f005cc16d95b7a8d2 262 Gene3D G3DSA:3.40.50.720 1 262 2.1E-70 T 12-10-2018 AMJ96_CH03580 149c6c4f7297c36f005cc16d95b7a8d2 262 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH03580 149c6c4f7297c36f005cc16d95b7a8d2 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 258 1.6E-45 T 12-10-2018 AMJ96_CH03580 149c6c4f7297c36f005cc16d95b7a8d2 262 SUPERFAMILY SSF51735 6 259 1.7E-64 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03580 149c6c4f7297c36f005cc16d95b7a8d2 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 7.8E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03580 149c6c4f7297c36f005cc16d95b7a8d2 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 7.8E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03580 149c6c4f7297c36f005cc16d95b7a8d2 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 7.8E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03580 149c6c4f7297c36f005cc16d95b7a8d2 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 7.8E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03580 149c6c4f7297c36f005cc16d95b7a8d2 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 7.8E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03580 149c6c4f7297c36f005cc16d95b7a8d2 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 7.8E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00181 1d2cf3d16cc09763846dfd503a886e6c 357 Pfam PF03411 Penicillin-insensitive murein endopeptidase 59 307 5.4E-99 T 12-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 AMJ96_CH00181 1d2cf3d16cc09763846dfd503a886e6c 357 SUPERFAMILY SSF55166 45 308 8.63E-93 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMJ96_CH00181 1d2cf3d16cc09763846dfd503a886e6c 357 Gene3D G3DSA:3.30.1380.10 44 311 1.7E-89 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMJ96_CH00181 1d2cf3d16cc09763846dfd503a886e6c 357 PIRSF PIRSF018455 1 316 1.0E-125 T 12-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 AMJ96_CH01839 6127d9eddddd477c6393d6be47723c12 318 Pfam PF01464 Transglycosylase SLT domain 75 165 2.6E-16 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 AMJ96_CH01839 6127d9eddddd477c6393d6be47723c12 318 SUPERFAMILY SSF53955 58 187 2.81E-31 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily AMJ96_CH01839 6127d9eddddd477c6393d6be47723c12 318 Gene3D G3DSA:1.10.530.10 63 195 8.1E-26 T 12-10-2018 AMJ96_CH01714 c492a1c79c5b567e70fa8d0c656baf9d 102 SMART SM01403 7 101 1.4E-59 T 12-10-2018 IPR027486 Ribosomal protein S10 domain AMJ96_CH01714 c492a1c79c5b567e70fa8d0c656baf9d 102 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.699 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01714 c492a1c79c5b567e70fa8d0c656baf9d 102 SUPERFAMILY SSF54999 6 102 4.84E-40 T 12-10-2018 IPR036838 Ribosomal protein S10 domain superfamily AMJ96_CH01714 c492a1c79c5b567e70fa8d0c656baf9d 102 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 4.6E-47 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01714 c492a1c79c5b567e70fa8d0c656baf9d 102 Gene3D G3DSA:3.30.70.600 1 102 1.4E-39 T 12-10-2018 IPR036838 Ribosomal protein S10 domain superfamily AMJ96_CH01714 c492a1c79c5b567e70fa8d0c656baf9d 102 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 12-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01714 c492a1c79c5b567e70fa8d0c656baf9d 102 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.8E-19 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01714 c492a1c79c5b567e70fa8d0c656baf9d 102 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.8E-19 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01714 c492a1c79c5b567e70fa8d0c656baf9d 102 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.8E-19 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01714 c492a1c79c5b567e70fa8d0c656baf9d 102 Pfam PF00338 Ribosomal protein S10p/S20e 7 101 2.3E-37 T 12-10-2018 IPR027486 Ribosomal protein S10 domain AMJ96_PB00419 c554aed8af20f8674001e0202bae21a0 393 Pfam PF13437 HlyD family secretion protein 246 352 6.9E-16 T 12-10-2018 AMJ96_PB00419 c554aed8af20f8674001e0202bae21a0 393 Gene3D G3DSA:2.40.30.170 58 353 8.2E-22 T 12-10-2018 AMJ96_PB00419 c554aed8af20f8674001e0202bae21a0 393 Gene3D G3DSA:2.40.50.100 70 281 8.2E-22 T 12-10-2018 AMJ96_PB00419 c554aed8af20f8674001e0202bae21a0 393 Gene3D G3DSA:1.10.287.470 104 245 8.2E-22 T 12-10-2018 AMJ96_CH02297 d7e6375124c8bfe4f66ebde0ac0eeb35 125 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 4 122 19.923 T 12-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AMJ96_CH02297 d7e6375124c8bfe4f66ebde0ac0eeb35 125 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 5 117 7.9E-26 T 12-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AMJ96_CH02297 d7e6375124c8bfe4f66ebde0ac0eeb35 125 TIGRFAM TIGR00494 crcB: protein CrcB 5 120 2.1E-29 T 12-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AMJ96_CH03393 b52babd2bfd5c3635f109b4bcc858a49 228 ProSitePatterns PS00211 ABC transporters family signature. 126 140 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03393 b52babd2bfd5c3635f109b4bcc858a49 228 SMART SM00382 10 202 2.5E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03393 b52babd2bfd5c3635f109b4bcc858a49 228 Pfam PF00005 ABC transporter 2 154 3.9E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03393 b52babd2bfd5c3635f109b4bcc858a49 228 SUPERFAMILY SSF52540 1 209 1.0E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03393 b52babd2bfd5c3635f109b4bcc858a49 228 Gene3D G3DSA:3.40.50.300 1 224 7.3E-56 T 12-10-2018 AMJ96_CH01080 89f3bbb93902c3af6701e6c7765e8d97 263 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH01080 89f3bbb93902c3af6701e6c7765e8d97 263 SUPERFAMILY SSF51735 1 259 3.36E-68 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01080 89f3bbb93902c3af6701e6c7765e8d97 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 7.5E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01080 89f3bbb93902c3af6701e6c7765e8d97 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 7.5E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01080 89f3bbb93902c3af6701e6c7765e8d97 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 7.5E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01080 89f3bbb93902c3af6701e6c7765e8d97 263 Gene3D G3DSA:3.40.50.720 1 262 1.3E-73 T 12-10-2018 AMJ96_CH01080 89f3bbb93902c3af6701e6c7765e8d97 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 7.0E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01080 89f3bbb93902c3af6701e6c7765e8d97 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 7.0E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01080 89f3bbb93902c3af6701e6c7765e8d97 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 7.0E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01080 89f3bbb93902c3af6701e6c7765e8d97 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 7.0E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01080 89f3bbb93902c3af6701e6c7765e8d97 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 7.0E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01080 89f3bbb93902c3af6701e6c7765e8d97 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 7.0E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01080 89f3bbb93902c3af6701e6c7765e8d97 263 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 191 0.0012 T 12-10-2018 AMJ96_CH01080 89f3bbb93902c3af6701e6c7765e8d97 263 Pfam PF00106 short chain dehydrogenase 8 194 4.5E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00206 1bbe7eb4a4bfab95cc1fb8dec286ce72 211 Pfam PF07811 TadE-like protein 31 73 1.4E-6 T 12-10-2018 IPR012495 TadE-like AMJ96_PA00047 d70a881618b5684ea0476ba033376d3d 116 Gene3D G3DSA:3.30.2310.20 1 104 2.2E-16 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily AMJ96_PC00344 1779d73e1267f3e61e720bb0a3929852 299 Gene3D G3DSA:3.40.50.300 3 297 1.8E-81 T 12-10-2018 AMJ96_PC00344 1779d73e1267f3e61e720bb0a3929852 299 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00344 1779d73e1267f3e61e720bb0a3929852 299 SMART SM00382 34 228 1.1E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00344 1779d73e1267f3e61e720bb0a3929852 299 Pfam PF00005 ABC transporter 27 179 7.4E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00344 1779d73e1267f3e61e720bb0a3929852 299 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 230 269 7.0E-9 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PC00344 1779d73e1267f3e61e720bb0a3929852 299 SUPERFAMILY SSF52540 5 249 4.46E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00281 31074decf0e098f45932a689bd606738 333 Gene3D G3DSA:3.40.50.1100 12 314 2.3E-103 T 12-10-2018 AMJ96_PD00281 31074decf0e098f45932a689bd606738 333 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 47 60 - T 12-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AMJ96_PD00281 31074decf0e098f45932a689bd606738 333 TIGRFAM TIGR02991 ectoine_eutB: ectoine utilization protein EutB 7 323 5.7E-167 T 12-10-2018 IPR014333 Ectoine utilization protein EutB KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AMJ96_PD00281 31074decf0e098f45932a689bd606738 333 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 23 309 8.6E-74 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMJ96_PD00281 31074decf0e098f45932a689bd606738 333 SUPERFAMILY SSF53686 8 318 1.31E-83 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMJ96_PD00281 31074decf0e098f45932a689bd606738 333 Gene3D G3DSA:3.40.50.1100 55 151 2.3E-103 T 12-10-2018 AMJ96_CH00180 51d056a50b147ef33a82b00fd035032a 126 PIRSF PIRSF006614 1 126 2.1E-52 T 12-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 AMJ96_CH00180 51d056a50b147ef33a82b00fd035032a 126 ProSitePatterns PS01335 Methylglyoxal synthase active site. 59 67 - T 12-10-2018 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 AMJ96_CH00180 51d056a50b147ef33a82b00fd035032a 126 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 5 122 1.8E-45 T 12-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 AMJ96_CH00180 51d056a50b147ef33a82b00fd035032a 126 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 5 125 30.051 T 12-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 AMJ96_CH00180 51d056a50b147ef33a82b00fd035032a 126 Pfam PF02142 MGS-like domain 19 111 3.5E-16 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain AMJ96_CH00180 51d056a50b147ef33a82b00fd035032a 126 Gene3D G3DSA:3.40.50.1380 1 125 4.6E-51 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMJ96_CH00180 51d056a50b147ef33a82b00fd035032a 126 SUPERFAMILY SSF52335 2 121 1.74E-44 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMJ96_CH00180 51d056a50b147ef33a82b00fd035032a 126 SMART SM00851 18 112 4.3E-21 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain AMJ96_PB00129 c790d7e569e37aad8c13433f2a606aef 294 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 169 289 4.7E-35 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AMJ96_PB00129 c790d7e569e37aad8c13433f2a606aef 294 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 9 164 4.2E-47 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 AMJ96_PB00129 c790d7e569e37aad8c13433f2a606aef 294 Gene3D G3DSA:1.10.1040.10 168 294 1.0E-30 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMJ96_PB00129 c790d7e569e37aad8c13433f2a606aef 294 SUPERFAMILY SSF48179 168 292 6.23E-28 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_PB00129 c790d7e569e37aad8c13433f2a606aef 294 PIRSF PIRSF000103 2 294 1.7E-71 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMJ96_PB00129 c790d7e569e37aad8c13433f2a606aef 294 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 11 24 - T 12-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 AMJ96_PB00129 c790d7e569e37aad8c13433f2a606aef 294 SUPERFAMILY SSF51735 7 167 6.11E-45 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PB00129 c790d7e569e37aad8c13433f2a606aef 294 Gene3D G3DSA:3.40.50.720 3 167 4.3E-52 T 12-10-2018 AMJ96_PD00638 a1729f9d8d9066e671b0234b9e41b2d2 418 Gene3D G3DSA:1.10.260.40 8 74 1.2E-12 T 12-10-2018 AMJ96_PD00638 a1729f9d8d9066e671b0234b9e41b2d2 418 Pfam PF13560 Helix-turn-helix domain 10 65 2.7E-9 T 12-10-2018 AMJ96_PD00638 a1729f9d8d9066e671b0234b9e41b2d2 418 Pfam PF06114 IrrE N-terminal-like domain 172 324 3.2E-15 T 12-10-2018 IPR010359 IrrE N-terminal-like domain AMJ96_PD00638 a1729f9d8d9066e671b0234b9e41b2d2 418 SMART SM00530 14 69 7.2E-10 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_PD00638 a1729f9d8d9066e671b0234b9e41b2d2 418 SUPERFAMILY SSF47413 8 75 7.78E-12 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH03309 b673573828d2fb1e5280667202c336d2 329 SUPERFAMILY SSF51215 27 93 6.8E-5 T 12-10-2018 IPR037923 Transcription regulator HTH-like AMJ96_CH03309 b673573828d2fb1e5280667202c336d2 329 Pfam PF12852 Cupin 17 200 8.2E-41 T 12-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain AMJ96_CH03309 b673573828d2fb1e5280667202c336d2 329 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 285 300 8.7E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_CH03309 b673573828d2fb1e5280667202c336d2 329 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 300 316 8.7E-5 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_CH03309 b673573828d2fb1e5280667202c336d2 329 SMART SM00342 233 316 2.0E-24 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH03309 b673573828d2fb1e5280667202c336d2 329 SUPERFAMILY SSF46689 269 318 4.93E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03309 b673573828d2fb1e5280667202c336d2 329 Pfam PF12833 Helix-turn-helix domain 239 317 6.2E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH03309 b673573828d2fb1e5280667202c336d2 329 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 270 312 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_CH03309 b673573828d2fb1e5280667202c336d2 329 Gene3D G3DSA:1.10.10.60 214 325 5.3E-24 T 12-10-2018 AMJ96_CH04005 4a4804093a601932e08711d197d23691 294 Pfam PF08241 Methyltransferase domain 83 137 1.2E-6 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMJ96_CH04005 4a4804093a601932e08711d197d23691 294 Gene3D G3DSA:3.40.50.150 26 259 7.0E-15 T 12-10-2018 AMJ96_CH04005 4a4804093a601932e08711d197d23691 294 SUPERFAMILY SSF53335 53 216 3.56E-18 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH01446 b463da5a0c544f0811738ff3e5b9b390 176 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 87 97 - T 12-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 AMJ96_CH01446 b463da5a0c544f0811738ff3e5b9b390 176 Gene3D G3DSA:3.90.190.10 5 136 1.3E-7 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMJ96_CH01446 b463da5a0c544f0811738ff3e5b9b390 176 SUPERFAMILY SSF52799 61 139 1.56E-12 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMJ96_PD00070 7486b996045a353fb82e425e16ab6cae 457 Pfam PF00989 PAS fold 141 249 3.7E-12 T 12-10-2018 IPR013767 PAS fold GO:0006355 AMJ96_PD00070 7486b996045a353fb82e425e16ab6cae 457 Pfam PF13426 PAS domain 25 127 1.1E-11 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00070 7486b996045a353fb82e425e16ab6cae 457 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 136 258 3.4E-23 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00070 7486b996045a353fb82e425e16ab6cae 457 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 10 128 3.8E-16 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00070 7486b996045a353fb82e425e16ab6cae 457 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 362 456 5.6E-11 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PD00070 7486b996045a353fb82e425e16ab6cae 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 454 1.5E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00070 7486b996045a353fb82e425e16ab6cae 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 397 411 1.5E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00070 7486b996045a353fb82e425e16ab6cae 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 436 1.5E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_PD00070 7486b996045a353fb82e425e16ab6cae 457 SMART SM00387 358 457 3.6E-16 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_PD00070 7486b996045a353fb82e425e16ab6cae 457 SUPERFAMILY SSF55874 324 454 1.31E-20 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PD00070 7486b996045a353fb82e425e16ab6cae 457 Pfam PF07568 Histidine kinase 266 340 9.0E-23 T 12-10-2018 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain AMJ96_PD00070 7486b996045a353fb82e425e16ab6cae 457 SMART SM00091 12 81 7.0E-6 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00070 7486b996045a353fb82e425e16ab6cae 457 SMART SM00091 140 208 5.0E-10 T 12-10-2018 IPR000014 PAS domain AMJ96_PD00070 7486b996045a353fb82e425e16ab6cae 457 Gene3D G3DSA:3.30.450.20 156 317 5.0E-26 T 12-10-2018 AMJ96_PD00070 7486b996045a353fb82e425e16ab6cae 457 SUPERFAMILY SSF55785 11 124 7.89E-19 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_PD00070 7486b996045a353fb82e425e16ab6cae 457 Gene3D G3DSA:3.30.450.20 8 144 4.5E-23 T 12-10-2018 AMJ96_PD00070 7486b996045a353fb82e425e16ab6cae 457 Gene3D G3DSA:3.30.565.10 322 457 5.4E-30 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PD00070 7486b996045a353fb82e425e16ab6cae 457 SMART SM00911 266 350 0.0029 T 12-10-2018 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 AMJ96_PD00070 7486b996045a353fb82e425e16ab6cae 457 SUPERFAMILY SSF55785 124 237 1.48E-22 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH01569 826ff4923d7d960cdc79e18a5808652b 115 Gene3D G3DSA:3.40.50.2300 1 114 1.1E-33 T 12-10-2018 AMJ96_CH01569 826ff4923d7d960cdc79e18a5808652b 115 SMART SM00448 2 109 4.4E-10 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01569 826ff4923d7d960cdc79e18a5808652b 115 SUPERFAMILY SSF52172 1 114 4.55E-20 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH01569 826ff4923d7d960cdc79e18a5808652b 115 Pfam PF00072 Response regulator receiver domain 4 109 1.7E-11 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00599 6526ace09203f0c92aeead63943fea06 336 Gene3D G3DSA:3.40.50.720 1 120 5.2E-32 T 12-10-2018 AMJ96_PD00599 6526ace09203f0c92aeead63943fea06 336 SUPERFAMILY SSF55347 131 302 5.23E-40 T 12-10-2018 AMJ96_PD00599 6526ace09203f0c92aeead63943fea06 336 Gene3D G3DSA:3.30.360.10 125 336 3.4E-53 T 12-10-2018 AMJ96_PD00599 6526ace09203f0c92aeead63943fea06 336 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 138 202 3.4E-8 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AMJ96_PD00599 6526ace09203f0c92aeead63943fea06 336 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 114 3.8E-17 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_PD00599 6526ace09203f0c92aeead63943fea06 336 SUPERFAMILY SSF51735 3 158 1.64E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00071 2267af0120ae37b1762fbe0df8d35a73 327 Gene3D G3DSA:3.40.50.720 5 253 2.5E-122 T 12-10-2018 AMJ96_CH00071 2267af0120ae37b1762fbe0df8d35a73 327 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 252 1.1E-53 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_CH00071 2267af0120ae37b1762fbe0df8d35a73 327 Gene3D G3DSA:3.90.25.10 174 306 2.5E-122 T 12-10-2018 AMJ96_CH00071 2267af0120ae37b1762fbe0df8d35a73 327 SUPERFAMILY SSF51735 1 315 8.12E-84 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00071 2267af0120ae37b1762fbe0df8d35a73 327 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 5 317 9.2E-117 T 12-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 AMJ96_CH04363 ce331bf1ff7ca4c0cf995e1fec684f4a 538 Gene3D G3DSA:3.40.140.20 395 538 2.4E-52 T 12-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMJ96_CH04363 ce331bf1ff7ca4c0cf995e1fec684f4a 538 SUPERFAMILY SSF53927 223 538 2.01E-125 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMJ96_CH04363 ce331bf1ff7ca4c0cf995e1fec684f4a 538 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 16 538 42.93 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMJ96_CH04363 ce331bf1ff7ca4c0cf995e1fec684f4a 538 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 17 538 5.9E-205 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMJ96_CH04363 ce331bf1ff7ca4c0cf995e1fec684f4a 538 SMART SM00798 147 463 3.5E-203 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMJ96_CH04363 ce331bf1ff7ca4c0cf995e1fec684f4a 538 Pfam PF01808 AICARFT/IMPCHase bienzyme 148 461 4.7E-116 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMJ96_CH04363 ce331bf1ff7ca4c0cf995e1fec684f4a 538 Pfam PF02142 MGS-like domain 28 141 1.1E-24 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain AMJ96_CH04363 ce331bf1ff7ca4c0cf995e1fec684f4a 538 PIRSF PIRSF000414 11 538 6.3E-204 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMJ96_CH04363 ce331bf1ff7ca4c0cf995e1fec684f4a 538 SUPERFAMILY SSF52335 16 207 2.35E-65 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMJ96_CH04363 ce331bf1ff7ca4c0cf995e1fec684f4a 538 SMART SM00851 28 142 4.5E-51 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain AMJ96_CH04363 ce331bf1ff7ca4c0cf995e1fec684f4a 538 Gene3D G3DSA:3.40.50.1380 9 211 2.8E-82 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily AMJ96_CH04363 ce331bf1ff7ca4c0cf995e1fec684f4a 538 Gene3D G3DSA:3.40.140.20 218 371 1.9E-57 T 12-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AMJ96_PD00630 dd70e526895f4291663bebef10cfcc27 504 Gene3D G3DSA:3.30.950.30 13 158 3.0E-8 T 12-10-2018 IPR038461 Schlafen, AAA domain superfamily AMJ96_PD00630 dd70e526895f4291663bebef10cfcc27 504 SMART SM00382 228 396 2.4E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00630 dd70e526895f4291663bebef10cfcc27 504 Gene3D G3DSA:3.40.50.300 196 386 3.3E-9 T 12-10-2018 AMJ96_PD00630 dd70e526895f4291663bebef10cfcc27 504 SUPERFAMILY SSF52540 200 458 2.75E-16 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00461 a8b0bfcacb41907861109d0f9f0a84e0 254 Gene3D G3DSA:3.40.1010.10 1 115 5.8E-25 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMJ96_PC00461 a8b0bfcacb41907861109d0f9f0a84e0 254 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 213 1.7E-36 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMJ96_PC00461 a8b0bfcacb41907861109d0f9f0a84e0 254 Gene3D G3DSA:3.30.950.10 116 250 4.4E-48 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AMJ96_PC00461 a8b0bfcacb41907861109d0f9f0a84e0 254 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 5 247 1.1E-84 T 12-10-2018 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 AMJ96_PC00461 a8b0bfcacb41907861109d0f9f0a84e0 254 SUPERFAMILY SSF53790 1 248 6.67E-51 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMJ96_PA00272 bb5cd55bb9cd73d70fbbd58ebe72c6f0 291 Pfam PF00248 Aldo/keto reductase family 19 286 3.3E-44 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_PA00272 bb5cd55bb9cd73d70fbbd58ebe72c6f0 291 PRINTS PR00069 Aldo-keto reductase signature 49 73 1.1E-8 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_PA00272 bb5cd55bb9cd73d70fbbd58ebe72c6f0 291 PRINTS PR00069 Aldo-keto reductase signature 150 167 1.1E-8 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_PA00272 bb5cd55bb9cd73d70fbbd58ebe72c6f0 291 PRINTS PR00069 Aldo-keto reductase signature 220 244 1.1E-8 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_PA00272 bb5cd55bb9cd73d70fbbd58ebe72c6f0 291 PRINTS PR00069 Aldo-keto reductase signature 114 132 1.1E-8 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_PA00272 bb5cd55bb9cd73d70fbbd58ebe72c6f0 291 Gene3D G3DSA:3.20.20.100 9 291 4.6E-62 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_PA00272 bb5cd55bb9cd73d70fbbd58ebe72c6f0 291 SUPERFAMILY SSF51430 14 286 9.43E-62 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH02410 1381165286f90149ad5720710352590f 456 Pfam PF02470 MlaD protein 47 115 3.6E-11 T 12-10-2018 IPR003399 Mce/MlaD AMJ96_CH02410 1381165286f90149ad5720710352590f 456 SUPERFAMILY SSF58104 156 354 4.19E-8 T 12-10-2018 AMJ96_PC00222 511d43fef9e7ce0cc5145dfb1d0b8000 259 Pfam PF01925 Sulfite exporter TauE/SafE 13 252 1.3E-47 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMJ96_CH04157 8e168b656cf20e413d740f114871b834 536 Pfam PF07219 HemY protein N-terminus 27 134 1.7E-25 T 12-10-2018 IPR010817 HemY, N-terminal AMJ96_CH04157 8e168b656cf20e413d740f114871b834 536 PIRSF PIRSF031802 2 536 2.1E-183 T 12-10-2018 IPR016982 Uncharacterised conserved protein UCP031802 AMJ96_CH04157 8e168b656cf20e413d740f114871b834 536 Gene3D G3DSA:1.25.40.10 80 403 1.2E-12 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH04157 8e168b656cf20e413d740f114871b834 536 SUPERFAMILY SSF48452 243 363 2.85E-7 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03285 2775d75327edf5c3aa03ef8e27aec1f8 380 Pfam PF01070 FMN-dependent dehydrogenase 14 377 8.4E-138 T 12-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 AMJ96_CH03285 2775d75327edf5c3aa03ef8e27aec1f8 380 PIRSF PIRSF000138 1 379 3.4E-131 T 12-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 AMJ96_CH03285 2775d75327edf5c3aa03ef8e27aec1f8 380 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 274 280 - T 12-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 AMJ96_CH03285 2775d75327edf5c3aa03ef8e27aec1f8 380 SUPERFAMILY SSF51395 4 374 1.22E-107 T 12-10-2018 AMJ96_CH03285 2775d75327edf5c3aa03ef8e27aec1f8 380 Gene3D G3DSA:3.20.20.70 5 379 3.8E-137 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH00255 ac1a2bf209fa6c427f5d2a452863380a 150 Gene3D G3DSA:3.90.1590.10 4 117 2.3E-12 T 12-10-2018 AMJ96_CH00255 ac1a2bf209fa6c427f5d2a452863380a 150 SUPERFAMILY SSF51316 6 123 2.41E-38 T 12-10-2018 IPR011057 Mss4-like superfamily AMJ96_CH00255 ac1a2bf209fa6c427f5d2a452863380a 150 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 30 117 2.5E-21 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMJ96_CH03329 be72ff1d28a3783155918c2426bd675e 407 Pfam PF13412 Winged helix-turn-helix DNA-binding 18 58 6.3E-5 T 12-10-2018 AMJ96_CH03329 be72ff1d28a3783155918c2426bd675e 407 SUPERFAMILY SSF53067 213 393 3.02E-22 T 12-10-2018 AMJ96_CH03329 be72ff1d28a3783155918c2426bd675e 407 Gene3D G3DSA:1.10.10.10 2 77 2.2E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03329 be72ff1d28a3783155918c2426bd675e 407 SUPERFAMILY SSF53067 81 200 2.45E-9 T 12-10-2018 AMJ96_CH03329 be72ff1d28a3783155918c2426bd675e 407 SUPERFAMILY SSF46785 9 75 5.97E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03329 be72ff1d28a3783155918c2426bd675e 407 Gene3D G3DSA:3.30.420.40 89 210 5.7E-36 T 12-10-2018 AMJ96_CH03329 be72ff1d28a3783155918c2426bd675e 407 Pfam PF00480 ROK family 116 356 6.2E-16 T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AMJ96_CH03329 be72ff1d28a3783155918c2426bd675e 407 Gene3D G3DSA:3.30.420.40 211 361 5.7E-36 T 12-10-2018 AMJ96_CH00256 5c7bc6dc6dc5a874eb0f87fe1b19cff4 99 Pfam PF01845 CcdB protein 3 98 2.4E-23 T 12-10-2018 IPR002712 Toxin CcdB GO:0006276|GO:0008657 AMJ96_CH00256 5c7bc6dc6dc5a874eb0f87fe1b19cff4 99 SUPERFAMILY SSF50118 2 99 5.17E-20 T 12-10-2018 AMJ96_CH00256 5c7bc6dc6dc5a874eb0f87fe1b19cff4 99 Gene3D G3DSA:2.30.30.110 1 99 2.0E-24 T 12-10-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor AMJ96_CH00256 5c7bc6dc6dc5a874eb0f87fe1b19cff4 99 ProDom PD012578 PLASMID TOXIN CCDB CYTOTOXIC LETB POST-SEGREGATION SYSTEM CCDB-LIKE GYRASE FUSED-CCDB 15 98 2.0E-7 T 12-10-2018 IPR002712 Toxin CcdB GO:0006276|GO:0008657 AMJ96_CH03059 1766d7862e56f5d8ba9b6cee3cea661f 256 Pfam PF05013 N-formylglutamate amidohydrolase 26 233 6.3E-43 T 12-10-2018 IPR007709 N-formylglutamate amidohydrolase AMJ96_CH03059 1766d7862e56f5d8ba9b6cee3cea661f 256 SUPERFAMILY SSF53187 15 255 2.42E-75 T 12-10-2018 AMJ96_CH03059 1766d7862e56f5d8ba9b6cee3cea661f 256 PIRSF PIRSF029730 4 256 9.8E-97 T 12-10-2018 IPR011227 Uncharacterised conserved protein UCP029730 AMJ96_CH03059 1766d7862e56f5d8ba9b6cee3cea661f 256 Gene3D G3DSA:3.40.630.40 16 256 2.5E-84 T 12-10-2018 AMJ96_CH00587 60eecc67487a078c38b927cb3f3302e1 344 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 253 8.0E-58 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_CH00587 60eecc67487a078c38b927cb3f3302e1 344 Gene3D G3DSA:3.90.25.10 174 307 2.1E-115 T 12-10-2018 AMJ96_CH00587 60eecc67487a078c38b927cb3f3302e1 344 SUPERFAMILY SSF51735 1 321 1.87E-90 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00587 60eecc67487a078c38b927cb3f3302e1 344 Gene3D G3DSA:3.40.50.720 3 253 2.1E-115 T 12-10-2018 AMJ96_CH00587 60eecc67487a078c38b927cb3f3302e1 344 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 322 1.0E-124 T 12-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 AMJ96_CH02218 35c1cb1874b27c74db0e016e24571f53 236 ProSitePatterns PS01331 Thymidylate kinase signature. 106 118 - T 12-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AMJ96_CH02218 35c1cb1874b27c74db0e016e24571f53 236 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 16 213 1.0E-51 T 12-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AMJ96_CH02218 35c1cb1874b27c74db0e016e24571f53 236 Gene3D G3DSA:3.40.50.300 13 223 2.7E-65 T 12-10-2018 AMJ96_CH02218 35c1cb1874b27c74db0e016e24571f53 236 Pfam PF02223 Thymidylate kinase 21 213 8.8E-48 T 12-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 AMJ96_CH02218 35c1cb1874b27c74db0e016e24571f53 236 SUPERFAMILY SSF52540 15 222 1.02E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02218 35c1cb1874b27c74db0e016e24571f53 236 Hamap MF_00165 Thymidylate kinase [tmk]. 17 221 29.73 T 12-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AMJ96_CH03117 cd5d18e6e8e7404150a1adb39a446386 395 Gene3D G3DSA:3.40.640.10 58 294 3.9E-129 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH03117 cd5d18e6e8e7404150a1adb39a446386 395 Gene3D G3DSA:3.90.1150.10 40 385 3.9E-129 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH03117 cd5d18e6e8e7404150a1adb39a446386 395 Hamap MF_00985 2-amino-3-ketobutyrate coenzyme A ligase [kbl]. 2 393 52.349 T 12-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 AMJ96_CH03117 cd5d18e6e8e7404150a1adb39a446386 395 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 239 248 - T 12-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 AMJ96_CH03117 cd5d18e6e8e7404150a1adb39a446386 395 Pfam PF00155 Aminotransferase class I and II 43 384 1.1E-65 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_CH03117 cd5d18e6e8e7404150a1adb39a446386 395 SUPERFAMILY SSF53383 5 393 1.29E-115 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH03117 cd5d18e6e8e7404150a1adb39a446386 395 TIGRFAM TIGR01822 2am3keto_CoA: glycine C-acetyltransferase 7 395 4.4E-193 T 12-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 AMJ96_CH02863 80dfb1b4e4cd300efa22d073286bc626 235 Gene3D G3DSA:1.20.120.1630 60 234 8.8E-29 T 12-10-2018 AMJ96_CH02863 80dfb1b4e4cd300efa22d073286bc626 235 Pfam PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family 146 212 7.1E-10 T 12-10-2018 IPR007269 Isoprenylcysteine carboxyl methyltransferase GO:0004671|GO:0006481|GO:0016021 Reactome: R-HSA-163841 AMJ96_CH01121 e966918ae8a1762ff32b37054a68a80d 156 Gene3D G3DSA:1.10.10.60 1 125 1.3E-38 T 12-10-2018 AMJ96_CH01149 11a503aca1080463c6019e160e57be74 430 Pfam PF13489 Methyltransferase domain 122 279 1.3E-9 T 12-10-2018 AMJ96_CH01149 11a503aca1080463c6019e160e57be74 430 SUPERFAMILY SSF53335 123 284 3.23E-23 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH01149 11a503aca1080463c6019e160e57be74 430 Gene3D G3DSA:3.40.50.150 123 286 9.4E-22 T 12-10-2018 AMJ96_PB00173 5a9bf3acd8aa3a1dad44928cdfa57155 362 Gene3D G3DSA:3.40.50.2300 70 324 1.4E-57 T 12-10-2018 AMJ96_PB00173 5a9bf3acd8aa3a1dad44928cdfa57155 362 SUPERFAMILY SSF53822 58 337 4.71E-51 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PB00173 5a9bf3acd8aa3a1dad44928cdfa57155 362 Pfam PF13407 Periplasmic binding protein domain 88 315 6.9E-43 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_PB00173 5a9bf3acd8aa3a1dad44928cdfa57155 362 Gene3D G3DSA:3.40.50.2300 164 336 1.4E-57 T 12-10-2018 AMJ96_PB00292 888088a66ee965986f01a2d39cbcd948 84 SUPERFAMILY SSF54862 5 64 9.42E-9 T 12-10-2018 AMJ96_PB00292 888088a66ee965986f01a2d39cbcd948 84 Gene3D G3DSA:3.30.70.20 1 66 1.3E-13 T 12-10-2018 AMJ96_PB00292 888088a66ee965986f01a2d39cbcd948 84 Pfam PF13459 4Fe-4S single cluster domain 7 65 3.1E-9 T 12-10-2018 AMJ96_PC00359 d8c104c484b2e9c4ac5bbd62605b65c7 398 SUPERFAMILY SSF53383 11 349 2.62E-41 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_PC00359 d8c104c484b2e9c4ac5bbd62605b65c7 398 Pfam PF03841 L-seryl-tRNA selenium transferase 14 265 4.5E-13 T 12-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 AMJ96_PC00359 d8c104c484b2e9c4ac5bbd62605b65c7 398 Gene3D G3DSA:3.40.640.10 24 273 5.9E-58 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH01729 56c0bf361c0d5dc155fbb665574bc8b0 132 Gene3D G3DSA:3.30.1370.30 2 74 1.4E-23 T 12-10-2018 AMJ96_CH01729 56c0bf361c0d5dc155fbb665574bc8b0 132 Pfam PF00410 Ribosomal protein S8 5 132 4.7E-48 T 12-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01729 56c0bf361c0d5dc155fbb665574bc8b0 132 Gene3D G3DSA:3.30.1490.10 75 131 9.4E-27 T 12-10-2018 AMJ96_CH01729 56c0bf361c0d5dc155fbb665574bc8b0 132 SUPERFAMILY SSF56047 3 132 3.4E-45 T 12-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01729 56c0bf361c0d5dc155fbb665574bc8b0 132 ProSitePatterns PS00053 Ribosomal protein S8 signature. 102 119 - T 12-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01729 56c0bf361c0d5dc155fbb665574bc8b0 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 30.198 T 12-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH02744 16be76fca29a13a74a4bcac8d4cdfd72 332 Pfam PF05661 Protein of unknown function (DUF808) 4 308 2.5E-119 T 12-10-2018 IPR008526 Inner membrane protein YedI AMJ96_CH02744 16be76fca29a13a74a4bcac8d4cdfd72 332 PIRSF PIRSF016660 1 319 2.9E-105 T 12-10-2018 IPR008526 Inner membrane protein YedI AMJ96_CH00381 9b63c363f500e6792d34107dc6cf3ef0 141 Gene3D G3DSA:2.60.40.790 32 138 1.1E-16 T 12-10-2018 IPR008978 HSP20-like chaperone AMJ96_CH00381 9b63c363f500e6792d34107dc6cf3ef0 141 Pfam PF00011 Hsp20/alpha crystallin family 48 138 1.5E-16 T 12-10-2018 IPR002068 Alpha crystallin/Hsp20 domain AMJ96_CH00381 9b63c363f500e6792d34107dc6cf3ef0 141 SUPERFAMILY SSF49764 33 137 4.5E-17 T 12-10-2018 IPR008978 HSP20-like chaperone AMJ96_CH03166 6f29a1be81c732055fc78b8e3b06191f 233 Gene3D G3DSA:1.10.10.10 137 233 5.2E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03166 6f29a1be81c732055fc78b8e3b06191f 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 160 230 2.4E-17 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH03166 6f29a1be81c732055fc78b8e3b06191f 233 Pfam PF00072 Response regulator receiver domain 15 122 3.4E-30 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03166 6f29a1be81c732055fc78b8e3b06191f 233 Gene3D G3DSA:3.40.50.2300 4 136 5.3E-40 T 12-10-2018 AMJ96_CH03166 6f29a1be81c732055fc78b8e3b06191f 233 SUPERFAMILY SSF52172 13 175 8.54E-42 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH03166 6f29a1be81c732055fc78b8e3b06191f 233 SMART SM00862 158 230 1.9E-19 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH03166 6f29a1be81c732055fc78b8e3b06191f 233 SMART SM00448 12 122 1.4E-43 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00026 cd626d639c75339a996afd8247486a32 1183 Gene3D G3DSA:3.90.320.10 981 1165 2.3E-8 T 12-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal AMJ96_CH00026 cd626d639c75339a996afd8247486a32 1183 Gene3D G3DSA:3.40.50.300 16 201 3.1E-31 T 12-10-2018 AMJ96_CH00026 cd626d639c75339a996afd8247486a32 1183 Pfam PF00580 UvrD/REP helicase N-terminal domain 20 479 5.4E-53 T 12-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AMJ96_CH00026 cd626d639c75339a996afd8247486a32 1183 SUPERFAMILY SSF52540 18 920 1.39E-107 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00026 cd626d639c75339a996afd8247486a32 1183 Pfam PF13361 UvrD-like helicase C-terminal domain 769 894 5.0E-16 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMJ96_CH00026 cd626d639c75339a996afd8247486a32 1183 Gene3D G3DSA:3.40.50.300 745 917 2.7E-21 T 12-10-2018 AMJ96_CH00026 cd626d639c75339a996afd8247486a32 1183 TIGRFAM TIGR02784 addA_alphas: double-strand break repair helicase AddA 23 1167 0.0 T 12-10-2018 IPR014151 DNA helicase, AddA type AMJ96_CH00026 cd626d639c75339a996afd8247486a32 1183 Gene3D G3DSA:3.40.50.300 574 680 1.9E-11 T 12-10-2018 AMJ96_CH00026 cd626d639c75339a996afd8247486a32 1183 SUPERFAMILY SSF52980 1011 1145 6.43E-6 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMJ96_CH00026 cd626d639c75339a996afd8247486a32 1183 Gene3D G3DSA:3.40.50.300 364 517 3.8E-31 T 12-10-2018 AMJ96_CH00026 cd626d639c75339a996afd8247486a32 1183 Pfam PF12705 PD-(D/E)XK nuclease superfamily 1007 1151 4.7E-12 T 12-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type AMJ96_CH00939 5b9483ec5c29ed19818dfdf6ae6859ea 311 SUPERFAMILY SSF52768 1 309 7.19E-101 T 12-10-2018 IPR023696 Ureohydrolase domain superfamily AMJ96_CH00939 5b9483ec5c29ed19818dfdf6ae6859ea 311 Gene3D G3DSA:3.40.800.20 1 310 4.7E-111 T 12-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMJ96_CH00939 5b9483ec5c29ed19818dfdf6ae6859ea 311 Pfam PF00850 Histone deacetylase domain 20 305 4.5E-88 T 12-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMJ96_CH00939 5b9483ec5c29ed19818dfdf6ae6859ea 311 PRINTS PR01270 Histone deacetylase superfamily signature 157 172 2.3E-18 T 12-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMJ96_CH00939 5b9483ec5c29ed19818dfdf6ae6859ea 311 PRINTS PR01270 Histone deacetylase superfamily signature 238 248 2.3E-18 T 12-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMJ96_CH00939 5b9483ec5c29ed19818dfdf6ae6859ea 311 PRINTS PR01270 Histone deacetylase superfamily signature 123 146 2.3E-18 T 12-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 AMJ96_CH00363 5865e19e733c721346016853e0ca0bd3 365 SUPERFAMILY SSF160991 3 357 1.16E-78 T 12-10-2018 AMJ96_CH00363 5865e19e733c721346016853e0ca0bd3 365 Pfam PF06032 Protein of unknown function (DUF917) 8 331 4.1E-57 T 12-10-2018 IPR010318 Protein of unknown function DUF917 AMJ96_CH00363 5865e19e733c721346016853e0ca0bd3 365 Gene3D G3DSA:3.40.1610.10 4 224 2.3E-20 T 12-10-2018 IPR027479 Protein of unknown function DUF917, N-terminal AMJ96_PA00195 fa1c34958cbb26a71e305ec161edec31 174 Pfam PF04542 Sigma-70 region 2 20 87 7.1E-17 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_PA00195 fa1c34958cbb26a71e305ec161edec31 174 Gene3D G3DSA:1.10.1740.10 1 111 1.8E-29 T 12-10-2018 AMJ96_PA00195 fa1c34958cbb26a71e305ec161edec31 174 Pfam PF08281 Sigma-70, region 4 114 165 1.8E-11 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_PA00195 fa1c34958cbb26a71e305ec161edec31 174 SUPERFAMILY SSF88659 109 169 9.72E-14 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_PA00195 fa1c34958cbb26a71e305ec161edec31 174 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 15 167 2.2E-29 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMJ96_PA00195 fa1c34958cbb26a71e305ec161edec31 174 SUPERFAMILY SSF88946 2 104 7.06E-29 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_PA00195 fa1c34958cbb26a71e305ec161edec31 174 Gene3D G3DSA:1.10.10.10 112 173 1.5E-16 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03982 2f615ade1d42d17556f377069aa8e750 116 Gene3D G3DSA:1.10.3990.20 8 115 2.4E-40 T 12-10-2018 IPR038268 Ribbon-helix-helix domain superfamily AMJ96_CH03982 2f615ade1d42d17556f377069aa8e750 116 Pfam PF13467 Ribbon-helix-helix domain 16 83 1.6E-25 T 12-10-2018 IPR027373 Ribbon-helix-helix domain AMJ96_CH01434 0d7d5da687e887d57e7426a87c7e798b 239 Pfam PF00035 Double-stranded RNA binding motif 163 227 1.8E-13 T 12-10-2018 IPR014720 Double-stranded RNA-binding domain AMJ96_CH01434 0d7d5da687e887d57e7426a87c7e798b 239 SMART SM00358 163 230 1.5E-18 T 12-10-2018 IPR014720 Double-stranded RNA-binding domain AMJ96_CH01434 0d7d5da687e887d57e7426a87c7e798b 239 SUPERFAMILY SSF54768 119 234 1.89E-25 T 12-10-2018 AMJ96_CH01434 0d7d5da687e887d57e7426a87c7e798b 239 Gene3D G3DSA:1.10.1520.10 13 152 2.6E-39 T 12-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 AMJ96_CH01434 0d7d5da687e887d57e7426a87c7e798b 239 Hamap MF_00104 Ribonuclease 3 [rnc]. 15 226 25.449 T 12-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 AMJ96_CH01434 0d7d5da687e887d57e7426a87c7e798b 239 SMART SM00535 27 158 1.8E-37 T 12-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 AMJ96_CH01434 0d7d5da687e887d57e7426a87c7e798b 239 Pfam PF14622 Ribonuclease-III-like 29 148 5.5E-29 T 12-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 AMJ96_CH01434 0d7d5da687e887d57e7426a87c7e798b 239 ProSitePatterns PS00517 Ribonuclease III family signature. 47 55 - T 12-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 AMJ96_CH01434 0d7d5da687e887d57e7426a87c7e798b 239 SUPERFAMILY SSF69065 11 164 1.12E-42 T 12-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 AMJ96_CH01434 0d7d5da687e887d57e7426a87c7e798b 239 Gene3D G3DSA:3.30.160.20 161 229 1.2E-18 T 12-10-2018 AMJ96_CH01434 0d7d5da687e887d57e7426a87c7e798b 239 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 16 228 2.6E-66 T 12-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 AMJ96_CH03256 cfea84df3fed613e78290b2d218f53cd 333 Gene3D G3DSA:3.40.50.300 6 329 2.8E-98 T 12-10-2018 AMJ96_CH03256 cfea84df3fed613e78290b2d218f53cd 333 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 235 320 4.1E-25 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_CH03256 cfea84df3fed613e78290b2d218f53cd 333 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 237 301 2.2E-20 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_CH03256 cfea84df3fed613e78290b2d218f53cd 333 SMART SM00382 37 235 2.3E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03256 cfea84df3fed613e78290b2d218f53cd 333 SUPERFAMILY SSF52540 36 321 3.55E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03256 cfea84df3fed613e78290b2d218f53cd 333 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03256 cfea84df3fed613e78290b2d218f53cd 333 Pfam PF00005 ABC transporter 29 185 2.1E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00022 bfc1e7527be823f27780f7a54f7c35b4 456 Pfam PF13454 FAD-NAD(P)-binding 7 154 2.2E-30 T 12-10-2018 IPR038732 FAD-dependent urate hydroxylase HpyO, FAD/NAD(P)-binding domain AMJ96_PA00022 bfc1e7527be823f27780f7a54f7c35b4 456 SUPERFAMILY SSF51905 2 449 5.59E-14 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PA00182 67375295be218b6bcd9c8fabc73ee661 300 Pfam PF05853 beta-keto acid cleavage enzyme 9 297 2.5E-95 T 12-10-2018 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00310+2.3.1.247 AMJ96_PA00182 67375295be218b6bcd9c8fabc73ee661 300 Gene3D G3DSA:3.20.20.70 6 300 3.6E-98 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH02657 e94e32226427ed2723af0179cfdecfbd 250 PIRSF PIRSF034285 1 250 2.5E-84 T 12-10-2018 IPR017026 Inducible mutagenesis protein A AMJ96_CH02657 e94e32226427ed2723af0179cfdecfbd 250 SUPERFAMILY SSF52540 49 165 2.21E-26 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02657 e94e32226427ed2723af0179cfdecfbd 250 Gene3D G3DSA:3.40.50.300 50 164 1.3E-18 T 12-10-2018 AMJ96_CH00319 d1c882f1879b99ddeac521e2e4de6dd4 120 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 33 119 2.4E-34 T 12-10-2018 IPR012997 Rare lipoprotein A AMJ96_CH00319 d1c882f1879b99ddeac521e2e4de6dd4 120 SUPERFAMILY SSF50685 31 119 8.02E-14 T 12-10-2018 IPR036908 RlpA-like domain superfamily AMJ96_CH00319 d1c882f1879b99ddeac521e2e4de6dd4 120 Gene3D G3DSA:2.40.40.10 31 120 1.2E-32 T 12-10-2018 IPR036908 RlpA-like domain superfamily AMJ96_CH00319 d1c882f1879b99ddeac521e2e4de6dd4 120 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 10 119 20.847 T 12-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 AMJ96_CH00319 d1c882f1879b99ddeac521e2e4de6dd4 120 Pfam PF03330 Lytic transglycolase 31 116 2.2E-26 T 12-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain AMJ96_CH03707 717ff3ee02dc66fb48479b471c6a00b2 274 Gene3D G3DSA:3.90.550.10 6 267 2.0E-58 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03707 717ff3ee02dc66fb48479b471c6a00b2 274 Pfam PF01501 Glycosyl transferase family 8 10 237 3.9E-14 T 12-10-2018 IPR002495 Glycosyl transferase, family 8 GO:0016757 AMJ96_CH03707 717ff3ee02dc66fb48479b471c6a00b2 274 SUPERFAMILY SSF53448 7 256 3.56E-42 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH04086 9577970057bac4a962f662108fddb468 396 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 152 235 3.1E-37 T 12-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMJ96_CH04086 9577970057bac4a962f662108fddb468 396 SUPERFAMILY SSF51735 8 156 8.86E-39 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH04086 9577970057bac4a962f662108fddb468 396 SUPERFAMILY SSF55347 132 270 4.25E-57 T 12-10-2018 AMJ96_CH04086 9577970057bac4a962f662108fddb468 396 Gene3D G3DSA:3.40.50.720 5 156 1.6E-45 T 12-10-2018 AMJ96_CH04086 9577970057bac4a962f662108fddb468 396 Gene3D G3DSA:1.10.1740.10 309 393 1.9E-22 T 12-10-2018 AMJ96_CH04086 9577970057bac4a962f662108fddb468 396 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 12 138 4.1E-37 T 12-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMJ96_CH04086 9577970057bac4a962f662108fddb468 396 Pfam PF13288 DXP reductoisomerase C-terminal domain 267 384 5.0E-33 T 12-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMJ96_CH04086 9577970057bac4a962f662108fddb468 396 PIRSF PIRSF006205 8 394 1.7E-139 T 12-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMJ96_CH04086 9577970057bac4a962f662108fddb468 396 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 9 387 1.9E-124 T 12-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMJ96_CH04086 9577970057bac4a962f662108fddb468 396 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 11 389 44.179 T 12-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMJ96_CH04086 9577970057bac4a962f662108fddb468 396 SUPERFAMILY SSF69055 298 390 1.22E-24 T 12-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 AMJ96_PD00361 d1df49a717bd52b904d5a579ed9b1625 593 Gene3D G3DSA:1.10.10.760 442 482 1.7E-175 T 12-10-2018 AMJ96_PD00361 d1df49a717bd52b904d5a579ed9b1625 593 SUPERFAMILY SSF51445 88 508 6.21E-110 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_PD00361 d1df49a717bd52b904d5a579ed9b1625 593 Pfam PF00128 Alpha amylase, catalytic domain 123 208 1.8E-15 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_PD00361 d1df49a717bd52b904d5a579ed9b1625 593 PIRSF PIRSF006337 2 573 3.0E-216 T 12-10-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|MetaCyc: PWY-2661 AMJ96_PD00361 d1df49a717bd52b904d5a579ed9b1625 593 Gene3D G3DSA:3.20.20.80 101 507 1.7E-175 T 12-10-2018 AMJ96_PD00361 d1df49a717bd52b904d5a579ed9b1625 593 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 17 551 4.4E-212 T 12-10-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|MetaCyc: PWY-2661 AMJ96_PD00361 d1df49a717bd52b904d5a579ed9b1625 593 Gene3D G3DSA:2.60.40.10 4 97 2.5E-25 T 12-10-2018 IPR013783 Immunoglobulin-like fold AMJ96_PD00361 d1df49a717bd52b904d5a579ed9b1625 593 SUPERFAMILY SSF81296 6 92 1.22E-19 T 12-10-2018 IPR014756 Immunoglobulin E-set AMJ96_PD00361 d1df49a717bd52b904d5a579ed9b1625 593 SMART SM00642 113 456 4.0E-10 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_PD00361 d1df49a717bd52b904d5a579ed9b1625 593 Pfam PF11941 Domain of unknown function (DUF3459) 498 584 1.0E-12 T 12-10-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) AMJ96_PD00642 a05cf8806e98ea36d7401250253e598a 212 Gene3D G3DSA:1.10.10.10 119 211 2.2E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00642 a05cf8806e98ea36d7401250253e598a 212 SMART SM00862 133 207 1.4E-18 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_PD00642 a05cf8806e98ea36d7401250253e598a 212 Pfam PF00486 Transcriptional regulatory protein, C terminal 133 206 4.5E-20 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_PD00642 a05cf8806e98ea36d7401250253e598a 212 SUPERFAMILY SSF52172 7 113 2.7E-7 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PD00642 a05cf8806e98ea36d7401250253e598a 212 Gene3D G3DSA:3.40.50.2300 2 106 7.3E-6 T 12-10-2018 AMJ96_PD00642 a05cf8806e98ea36d7401250253e598a 212 SUPERFAMILY SSF46894 124 207 1.59E-19 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH00745 92cbcb448e485b97596eb7ff1bb1d9d3 232 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 8 222 9.0E-55 T 12-10-2018 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 AMJ96_CH00745 92cbcb448e485b97596eb7ff1bb1d9d3 232 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 10 219 2.8E-53 T 12-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 AMJ96_CH00745 92cbcb448e485b97596eb7ff1bb1d9d3 232 Gene3D G3DSA:3.40.50.1360 1 232 1.4E-67 T 12-10-2018 AMJ96_CH00745 92cbcb448e485b97596eb7ff1bb1d9d3 232 SUPERFAMILY SSF100950 5 222 7.18E-54 T 12-10-2018 IPR037171 NagB/RpiA transferase-like AMJ96_CH03135 117867707019453bd90491fd304e913d 443 SUPERFAMILY SSF118215 22 415 2.09E-120 T 12-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMJ96_CH03135 117867707019453bd90491fd304e913d 443 PRINTS PR00173 Glutamate-aspartate symporter signature 87 112 2.2E-26 T 12-10-2018 AMJ96_CH03135 117867707019453bd90491fd304e913d 443 PRINTS PR00173 Glutamate-aspartate symporter signature 158 180 2.2E-26 T 12-10-2018 AMJ96_CH03135 117867707019453bd90491fd304e913d 443 PRINTS PR00173 Glutamate-aspartate symporter signature 305 331 2.2E-26 T 12-10-2018 AMJ96_CH03135 117867707019453bd90491fd304e913d 443 PRINTS PR00173 Glutamate-aspartate symporter signature 20 40 2.2E-26 T 12-10-2018 AMJ96_CH03135 117867707019453bd90491fd304e913d 443 PRINTS PR00173 Glutamate-aspartate symporter signature 340 359 2.2E-26 T 12-10-2018 AMJ96_CH03135 117867707019453bd90491fd304e913d 443 Pfam PF00375 Sodium:dicarboxylate symporter family 22 414 6.7E-110 T 12-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AMJ96_CH03135 117867707019453bd90491fd304e913d 443 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 49 64 - T 12-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AMJ96_CH03135 117867707019453bd90491fd304e913d 443 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 15 441 38.937 T 12-10-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 AMJ96_CH03135 117867707019453bd90491fd304e913d 443 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 308 331 - T 12-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AMJ96_CH03135 117867707019453bd90491fd304e913d 443 Gene3D G3DSA:1.10.3860.10 10 428 6.6E-125 T 12-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 AMJ96_PB00260 a25dfd9020afcc5d642c36be3f3f9457 171 Pfam PF02543 Carbamoyltransferase N-terminus 25 114 8.5E-22 T 12-10-2018 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 AMJ96_PB00260 a25dfd9020afcc5d642c36be3f3f9457 171 Gene3D G3DSA:3.30.420.40 20 135 8.1E-24 T 12-10-2018 AMJ96_CH04262 daacdbb30c7b1bb0853675a2084eaf66 233 SUPERFAMILY SSF53955 53 220 3.09E-48 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily AMJ96_CH04262 daacdbb30c7b1bb0853675a2084eaf66 233 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 14 222 9.6E-57 T 12-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH04262 daacdbb30c7b1bb0853675a2084eaf66 233 Pfam PF00912 Transglycosylase 56 201 1.7E-43 T 12-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH04262 daacdbb30c7b1bb0853675a2084eaf66 233 Gene3D G3DSA:1.10.3810.10 51 226 2.4E-44 T 12-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH04262 daacdbb30c7b1bb0853675a2084eaf66 233 Hamap MF_00766 Biosynthetic peptidoglycan transglycosylase [mtgA]. 13 227 35.819 T 12-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH01142 b8db6184d9db72d6974ee705978af0a4 617 Gene3D G3DSA:3.40.50.1110 268 405 3.1E-6 T 12-10-2018 IPR036514 SGNH hydrolase superfamily AMJ96_PA00007 669d27589953918a4f656061cdb8d790 591 SUPERFAMILY SSF52540 343 586 5.45E-75 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00007 669d27589953918a4f656061cdb8d790 591 SMART SM00382 367 564 3.8E-20 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00007 669d27589953918a4f656061cdb8d790 591 Gene3D G3DSA:3.40.50.300 340 590 5.9E-77 T 12-10-2018 AMJ96_PA00007 669d27589953918a4f656061cdb8d790 591 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 290 8.4E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PA00007 669d27589953918a4f656061cdb8d790 591 Pfam PF00005 ABC transporter 358 516 2.4E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00007 669d27589953918a4f656061cdb8d790 591 Gene3D G3DSA:1.10.3720.10 68 298 3.9E-45 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00007 669d27589953918a4f656061cdb8d790 591 SUPERFAMILY SSF161098 74 278 1.83E-35 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00007 669d27589953918a4f656061cdb8d790 591 ProSitePatterns PS00211 ABC transporters family signature. 488 502 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00168 a1bec802c1cb1a468f0d2873f4bde66c 205 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 117 145 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMJ96_CH00168 a1bec802c1cb1a468f0d2873f4bde66c 205 Gene3D G3DSA:2.160.10.10 5 203 9.4E-49 T 12-10-2018 AMJ96_CH00168 a1bec802c1cb1a468f0d2873f4bde66c 205 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 142 9.3E-9 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH00168 a1bec802c1cb1a468f0d2873f4bde66c 205 SUPERFAMILY SSF51161 10 200 1.8E-40 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily AMJ96_CH00168 a1bec802c1cb1a468f0d2873f4bde66c 205 TIGRFAM TIGR03308 phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family 3 203 4.3E-99 T 12-10-2018 IPR017694 Phosphonate metabolism protein, transferase hexapeptide repeat family AMJ96_PB00212 bca44fe6ba11d6fdb20bb496266c91f6 79 Pfam PF06412 Conjugal transfer protein TraD 3 61 1.5E-21 T 12-10-2018 IPR009444 Conjugal transfer, TraD, alpha-type GO:0000746 AMJ96_PD00400 dd4de8db2bc56bb69be9f3b2e1f938e3 406 Pfam PF13416 Bacterial extracellular solute-binding protein 47 340 1.8E-35 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PD00400 dd4de8db2bc56bb69be9f3b2e1f938e3 406 SUPERFAMILY SSF53850 29 402 7.06E-69 T 12-10-2018 AMJ96_PD00400 dd4de8db2bc56bb69be9f3b2e1f938e3 406 Gene3D G3DSA:3.40.190.10 23 406 9.8E-83 T 12-10-2018 AMJ96_CH04141 b7f0f04b7f3c0644fce602ba715a47ec 320 PIRSF PIRSF000102 1 314 2.2E-101 T 12-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMJ96_CH04141 b7f0f04b7f3c0644fce602ba715a47ec 320 Gene3D G3DSA:3.90.110.10 147 319 3.5E-67 T 12-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMJ96_CH04141 b7f0f04b7f3c0644fce602ba715a47ec 320 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 303 2.0E-30 T 12-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 AMJ96_CH04141 b7f0f04b7f3c0644fce602ba715a47ec 320 PRINTS PR00086 L-lactate dehydrogenase signature 5 29 7.2E-27 T 12-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMJ96_CH04141 b7f0f04b7f3c0644fce602ba715a47ec 320 PRINTS PR00086 L-lactate dehydrogenase signature 141 159 7.2E-27 T 12-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMJ96_CH04141 b7f0f04b7f3c0644fce602ba715a47ec 320 PRINTS PR00086 L-lactate dehydrogenase signature 29 53 7.2E-27 T 12-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMJ96_CH04141 b7f0f04b7f3c0644fce602ba715a47ec 320 PRINTS PR00086 L-lactate dehydrogenase signature 171 184 7.2E-27 T 12-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMJ96_CH04141 b7f0f04b7f3c0644fce602ba715a47ec 320 PRINTS PR00086 L-lactate dehydrogenase signature 117 137 7.2E-27 T 12-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AMJ96_CH04141 b7f0f04b7f3c0644fce602ba715a47ec 320 SUPERFAMILY SSF51735 5 144 2.49E-45 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH04141 b7f0f04b7f3c0644fce602ba715a47ec 320 SUPERFAMILY SSF56327 144 311 6.77E-56 T 12-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMJ96_CH04141 b7f0f04b7f3c0644fce602ba715a47ec 320 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 5 143 1.6E-37 T 12-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_CH04141 b7f0f04b7f3c0644fce602ba715a47ec 320 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 3 309 1.6E-126 T 12-10-2018 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 AMJ96_CH04141 b7f0f04b7f3c0644fce602ba715a47ec 320 Hamap MF_00487 Malate dehydrogenase [mdh]. 3 313 46.246 T 12-10-2018 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 AMJ96_CH04141 b7f0f04b7f3c0644fce602ba715a47ec 320 Gene3D G3DSA:3.40.50.720 1 145 6.6E-56 T 12-10-2018 AMJ96_PA00087 c48f6eec836b25cb5e44d1fc74e60b36 375 SUPERFAMILY SSF47203 226 375 1.93E-59 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMJ96_PA00087 c48f6eec836b25cb5e44d1fc74e60b36 375 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 116 6.5E-36 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMJ96_PA00087 c48f6eec836b25cb5e44d1fc74e60b36 375 Gene3D G3DSA:1.10.540.10 1 118 6.2E-47 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMJ96_PA00087 c48f6eec836b25cb5e44d1fc74e60b36 375 Gene3D G3DSA:1.20.140.10 232 375 2.6E-58 T 12-10-2018 AMJ96_PA00087 c48f6eec836b25cb5e44d1fc74e60b36 375 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMJ96_PA00087 c48f6eec836b25cb5e44d1fc74e60b36 375 SUPERFAMILY SSF56645 3 240 1.44E-81 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMJ96_PA00087 c48f6eec836b25cb5e44d1fc74e60b36 375 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 375 1.0E-53 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMJ96_PA00087 c48f6eec836b25cb5e44d1fc74e60b36 375 PIRSF PIRSF016578 211 375 2.6E-12 T 12-10-2018 AMJ96_PA00087 c48f6eec836b25cb5e44d1fc74e60b36 375 PIRSF PIRSF016578 3 205 8.0E-8 T 12-10-2018 AMJ96_PA00087 c48f6eec836b25cb5e44d1fc74e60b36 375 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 214 4.5E-26 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMJ96_PA00087 c48f6eec836b25cb5e44d1fc74e60b36 375 Gene3D G3DSA:2.40.110.10 119 231 5.9E-40 T 12-10-2018 AMJ96_CH02315 9736fcd407587638c9b3336783d285ae 388 SUPERFAMILY SSF53383 4 377 7.85E-87 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH02315 9736fcd407587638c9b3336783d285ae 388 Pfam PF00266 Aminotransferase class-V 7 369 9.3E-54 T 12-10-2018 IPR000192 Aminotransferase class V domain AMJ96_CH02315 9736fcd407587638c9b3336783d285ae 388 PIRSF PIRSF005572 3 384 7.5E-108 T 12-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 AMJ96_CH02315 9736fcd407587638c9b3336783d285ae 388 Gene3D G3DSA:1.10.260.50 17 285 3.7E-110 T 12-10-2018 AMJ96_CH02315 9736fcd407587638c9b3336783d285ae 388 Gene3D G3DSA:3.90.1150.10 7 373 3.7E-110 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH02315 9736fcd407587638c9b3336783d285ae 388 Gene3D G3DSA:3.40.640.10 62 241 3.7E-110 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH01936 3891097e78eaf0606efb50b45954e7d6 630 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 141 313 1.5E-79 T 12-10-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 AMJ96_CH01936 3891097e78eaf0606efb50b45954e7d6 630 Gene3D G3DSA:3.40.50.1820 270 535 2.0E-7 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01936 3891097e78eaf0606efb50b45954e7d6 630 SUPERFAMILY SSF53474 284 560 1.21E-36 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01936 3891097e78eaf0606efb50b45954e7d6 630 TIGRFAM TIGR01838 PHA_synth_I: poly(R)-hydroxyalkanoic acid synthase, class I 101 627 2.1E-223 T 12-10-2018 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I GO:0005737|GO:0016746|GO:0042619 AMJ96_CH00293 c44e047ec05928530331fafb1fc79d61 417 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 309 329 4.1E-73 T 12-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 AMJ96_CH00293 c44e047ec05928530331fafb1fc79d61 417 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 397 416 4.1E-73 T 12-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 AMJ96_CH00293 c44e047ec05928530331fafb1fc79d61 417 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 164 186 4.1E-73 T 12-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 AMJ96_CH00293 c44e047ec05928530331fafb1fc79d61 417 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 88 107 4.1E-73 T 12-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 AMJ96_CH00293 c44e047ec05928530331fafb1fc79d61 417 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 253 272 4.1E-73 T 12-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 AMJ96_CH00293 c44e047ec05928530331fafb1fc79d61 417 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 371 393 4.1E-73 T 12-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 AMJ96_CH00293 c44e047ec05928530331fafb1fc79d61 417 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 332 353 4.1E-73 T 12-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 AMJ96_CH00293 c44e047ec05928530331fafb1fc79d61 417 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 23 40 4.1E-73 T 12-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 AMJ96_CH00293 c44e047ec05928530331fafb1fc79d61 417 Pfam PF02073 Thermophilic metalloprotease (M29) 15 416 3.4E-166 T 12-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 AMJ96_CH00293 c44e047ec05928530331fafb1fc79d61 417 Gene3D G3DSA:3.40.1830.10 13 185 1.6E-56 T 12-10-2018 IPR035097 Peptidase M29, N-terminal AMJ96_CH00293 c44e047ec05928530331fafb1fc79d61 417 SUPERFAMILY SSF144052 15 417 1.1E-142 T 12-10-2018 AMJ96_CH00720 eb71b2fba89d5951ac0efcacec34e988 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 219 1.0E-14 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH00720 eb71b2fba89d5951ac0efcacec34e988 223 SUPERFAMILY SSF46894 124 220 1.36E-16 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH00720 eb71b2fba89d5951ac0efcacec34e988 223 SMART SM00862 144 220 2.1E-15 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH00720 eb71b2fba89d5951ac0efcacec34e988 223 Gene3D G3DSA:1.10.10.10 123 222 1.1E-16 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00720 eb71b2fba89d5951ac0efcacec34e988 223 SUPERFAMILY SSF52172 2 124 4.98E-11 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH00720 eb71b2fba89d5951ac0efcacec34e988 223 Gene3D G3DSA:3.40.50.2300 1 121 1.0E-7 T 12-10-2018 AMJ96_CH01756 126c01dc9fa745fe636221db6529cc42 295 Gene3D G3DSA:3.40.190.290 94 294 9.5E-55 T 12-10-2018 AMJ96_CH01756 126c01dc9fa745fe636221db6529cc42 295 Gene3D G3DSA:1.10.10.10 4 90 5.0E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01756 126c01dc9fa745fe636221db6529cc42 295 SUPERFAMILY SSF53850 94 295 2.53E-41 T 12-10-2018 AMJ96_CH01756 126c01dc9fa745fe636221db6529cc42 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 3.3E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01756 126c01dc9fa745fe636221db6529cc42 295 Pfam PF03466 LysR substrate binding domain 91 294 2.1E-38 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH01756 126c01dc9fa745fe636221db6529cc42 295 SUPERFAMILY SSF46785 6 90 2.99E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02586 2ecd442fb4ea573f7c97294711df87ba 114 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 30 37 - T 12-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site AMJ96_CH02586 2ecd442fb4ea573f7c97294711df87ba 114 Pfam PF00381 PTS HPr component phosphorylation site 20 101 3.8E-18 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like AMJ96_CH02586 2ecd442fb4ea573f7c97294711df87ba 114 PRINTS PR00107 Phosphocarrier protein signature 72 89 1.4E-7 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like AMJ96_CH02586 2ecd442fb4ea573f7c97294711df87ba 114 PRINTS PR00107 Phosphocarrier protein signature 57 72 1.4E-7 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like AMJ96_CH02586 2ecd442fb4ea573f7c97294711df87ba 114 PRINTS PR00107 Phosphocarrier protein signature 30 46 1.4E-7 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like AMJ96_CH02586 2ecd442fb4ea573f7c97294711df87ba 114 SUPERFAMILY SSF55594 20 107 5.23E-21 T 12-10-2018 IPR035895 HPr-like superfamily AMJ96_CH02586 2ecd442fb4ea573f7c97294711df87ba 114 Gene3D G3DSA:3.30.1340.10 19 107 2.5E-23 T 12-10-2018 IPR035895 HPr-like superfamily AMJ96_CH02586 2ecd442fb4ea573f7c97294711df87ba 114 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 20 101 4.0E-18 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like AMJ96_PD00197 9dc28e516c01ad5b847223210f4bbc55 256 Gene3D G3DSA:3.20.20.70 1 256 3.4E-100 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_PD00197 9dc28e516c01ad5b847223210f4bbc55 256 Pfam PF05690 Thiazole biosynthesis protein ThiG 4 249 2.4E-105 T 12-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 AMJ96_PD00197 9dc28e516c01ad5b847223210f4bbc55 256 Hamap MF_00443 Thiazole synthase [thiG]. 1 255 38.919 T 12-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 AMJ96_PD00197 9dc28e516c01ad5b847223210f4bbc55 256 SUPERFAMILY SSF110399 1 235 1.57E-78 T 12-10-2018 AMJ96_PD00215 55b67af50ee84de293ceb4f142d6794a 206 SUPERFAMILY SSF69593 11 200 7.45E-32 T 12-10-2018 AMJ96_PD00215 55b67af50ee84de293ceb4f142d6794a 206 SMART SM00563 33 153 3.6E-17 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMJ96_PD00215 55b67af50ee84de293ceb4f142d6794a 206 Pfam PF01553 Acyltransferase 32 148 5.5E-16 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMJ96_CH00067 a87fec6ab56f9df932f0c3bd6406542a 1139 Pfam PF13087 AAA domain 917 1094 5.9E-13 T 12-10-2018 AMJ96_CH00067 a87fec6ab56f9df932f0c3bd6406542a 1139 Pfam PF13086 AAA domain 794 855 3.2E-6 T 12-10-2018 AMJ96_CH00067 a87fec6ab56f9df932f0c3bd6406542a 1139 SUPERFAMILY SSF52540 332 1101 2.95E-32 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00067 a87fec6ab56f9df932f0c3bd6406542a 1139 Gene3D G3DSA:3.40.50.300 918 1118 1.0E-23 T 12-10-2018 AMJ96_PD00318 dd2487a034cb84a5e2a101828607daea 117 Pfam PF01022 Bacterial regulatory protein, arsR family 30 73 9.4E-15 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_PD00318 dd2487a034cb84a5e2a101828607daea 117 Gene3D G3DSA:1.10.10.10 2 116 5.2E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00318 dd2487a034cb84a5e2a101828607daea 117 SMART SM00418 21 99 3.8E-26 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_PD00318 dd2487a034cb84a5e2a101828607daea 117 SUPERFAMILY SSF46785 16 114 4.34E-25 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00318 dd2487a034cb84a5e2a101828607daea 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 23 38 1.4E-9 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_PD00318 dd2487a034cb84a5e2a101828607daea 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 70 85 1.4E-9 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_PD00318 dd2487a034cb84a5e2a101828607daea 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 1.4E-9 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH01294 3fb5fad947ee74a23d44532ddbf64e2f 140 Gene3D G3DSA:3.90.1010.10 1 139 6.8E-51 T 12-10-2018 AMJ96_CH01294 3fb5fad947ee74a23d44532ddbf64e2f 140 SUPERFAMILY SSF82649 2 135 1.62E-45 T 12-10-2018 AMJ96_CH01294 3fb5fad947ee74a23d44532ddbf64e2f 140 Pfam PF02657 Fe-S metabolism associated domain 9 132 3.7E-46 T 12-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like AMJ96_CH02182 3ecc20c6150d9cbae23fa4b5398d7581 177 Pfam PF00293 NUDIX domain 39 153 1.5E-7 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMJ96_CH02182 3ecc20c6150d9cbae23fa4b5398d7581 177 SUPERFAMILY SSF55811 35 162 1.96E-16 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_CH02182 3ecc20c6150d9cbae23fa4b5398d7581 177 Gene3D G3DSA:3.90.79.10 34 168 1.2E-21 T 12-10-2018 AMJ96_PC00434 6b1c9ffb5456aa4ce7a23b0da1d7f060 177 Pfam PF04268 Sarcosine oxidase, gamma subunit family 29 173 4.6E-32 T 12-10-2018 IPR007375 Sarcosine oxidase, gamma subunit KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 AMJ96_PC00434 6b1c9ffb5456aa4ce7a23b0da1d7f060 177 Gene3D G3DSA:3.30.1360.120 80 176 6.8E-27 T 12-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMJ96_PC00434 6b1c9ffb5456aa4ce7a23b0da1d7f060 177 SUPERFAMILY SSF103025 65 172 1.51E-11 T 12-10-2018 AMJ96_CH02821 b1f5b24640c6b5ea9f89abe213b3b272 283 SUPERFAMILY SSF161098 11 283 1.3E-64 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02821 b1f5b24640c6b5ea9f89abe213b3b272 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 272 8.0E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02821 b1f5b24640c6b5ea9f89abe213b3b272 283 Gene3D G3DSA:1.10.3720.10 8 274 2.9E-55 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01175 99f8ce6e95d7ac080218443bbc65fa92 487 Hamap MF_00804 NAD/NADP-dependent betaine aldehyde dehydrogenase [betB]. 4 487 59.236 T 12-10-2018 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 AMJ96_CH01175 99f8ce6e95d7ac080218443bbc65fa92 487 Pfam PF00171 Aldehyde dehydrogenase family 16 476 5.3E-173 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_CH01175 99f8ce6e95d7ac080218443bbc65fa92 487 SUPERFAMILY SSF53720 6 483 5.11E-168 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_CH01175 99f8ce6e95d7ac080218443bbc65fa92 487 TIGRFAM TIGR01804 BADH: betaine-aldehyde dehydrogenase 10 474 1.4E-235 T 12-10-2018 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 AMJ96_CH01175 99f8ce6e95d7ac080218443bbc65fa92 487 Gene3D G3DSA:3.40.605.10 1 252 1.7E-102 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_CH01175 99f8ce6e95d7ac080218443bbc65fa92 487 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 277 288 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMJ96_CH01175 99f8ce6e95d7ac080218443bbc65fa92 487 Gene3D G3DSA:3.40.309.10 253 480 1.9E-83 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_CH01175 99f8ce6e95d7ac080218443bbc65fa92 487 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 249 256 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMJ96_PD00696 4627a44f412f5d69135083328675acb7 353 Gene3D G3DSA:2.40.50.940 222 339 6.1E-27 T 12-10-2018 AMJ96_PD00696 4627a44f412f5d69135083328675acb7 353 SMART SM00382 28 211 2.9E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00696 4627a44f412f5d69135083328675acb7 353 SUPERFAMILY SSF52540 4 242 5.03E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00696 4627a44f412f5d69135083328675acb7 353 SUPERFAMILY SSF50331 236 346 9.72E-27 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_PD00696 4627a44f412f5d69135083328675acb7 353 Gene3D G3DSA:3.40.50.300 3 221 6.6E-65 T 12-10-2018 AMJ96_PD00696 4627a44f412f5d69135083328675acb7 353 Pfam PF00005 ABC transporter 20 161 1.1E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00696 4627a44f412f5d69135083328675acb7 353 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00696 4627a44f412f5d69135083328675acb7 353 Pfam PF08402 TOBE domain 272 338 2.3E-8 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_PD00696 4627a44f412f5d69135083328675acb7 353 Gene3D G3DSA:2.40.50.140 278 330 6.1E-27 T 12-10-2018 AMJ96_CH02772 c7a1cc034a764953bdc8772695625e52 193 Gene3D G3DSA:3.40.50.1820 3 192 2.0E-17 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02772 c7a1cc034a764953bdc8772695625e52 193 SUPERFAMILY SSF53474 4 192 1.5E-16 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02772 c7a1cc034a764953bdc8772695625e52 193 Pfam PF01738 Dienelactone hydrolase family 4 192 1.6E-9 T 12-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 AMJ96_CH02932 be577db95a5ea2fa6288d47e213c6b8f 302 Gene3D G3DSA:3.90.25.10 145 276 7.1E-85 T 12-10-2018 AMJ96_CH02932 be577db95a5ea2fa6288d47e213c6b8f 302 SUPERFAMILY SSF51735 4 257 3.4E-52 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02932 be577db95a5ea2fa6288d47e213c6b8f 302 Pfam PF05368 NmrA-like family 5 224 9.1E-26 T 12-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 AMJ96_CH02932 be577db95a5ea2fa6288d47e213c6b8f 302 Gene3D G3DSA:3.40.50.720 6 275 7.1E-85 T 12-10-2018 AMJ96_CH04072 a810dd46c3eef2e2ce5c46541d4385ab 316 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 9 309 4.8E-101 T 12-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 AMJ96_CH04072 a810dd46c3eef2e2ce5c46541d4385ab 316 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 6 309 52.465 T 12-10-2018 IPR023009 Tyrosine recombinase XerC/XerD AMJ96_CH04072 a810dd46c3eef2e2ce5c46541d4385ab 316 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 4 309 58.502 T 12-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 AMJ96_CH04072 a810dd46c3eef2e2ce5c46541d4385ab 316 SUPERFAMILY SSF56349 9 301 3.53E-52 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMJ96_CH04072 a810dd46c3eef2e2ce5c46541d4385ab 316 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 8 90 3.0E-19 T 12-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AMJ96_CH04072 a810dd46c3eef2e2ce5c46541d4385ab 316 Gene3D G3DSA:1.10.150.130 4 98 1.6E-23 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal AMJ96_CH04072 a810dd46c3eef2e2ce5c46541d4385ab 316 Gene3D G3DSA:1.10.443.10 104 315 3.9E-52 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMJ96_CH04072 a810dd46c3eef2e2ce5c46541d4385ab 316 Pfam PF00589 Phage integrase family 116 295 6.5E-40 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMJ96_CH02363 3b72af40ee6863efb0496f47358a0f9d 226 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 30 171 2.3E-15 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH02363 3b72af40ee6863efb0496f47358a0f9d 226 SMART SM00062 16 226 0.0075 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH02363 3b72af40ee6863efb0496f47358a0f9d 226 SUPERFAMILY SSF53850 8 212 5.22E-23 T 12-10-2018 AMJ96_CH02363 3b72af40ee6863efb0496f47358a0f9d 226 Gene3D G3DSA:3.40.190.10 103 194 1.2E-16 T 12-10-2018 AMJ96_CH02363 3b72af40ee6863efb0496f47358a0f9d 226 Gene3D G3DSA:3.40.190.10 14 216 1.2E-16 T 12-10-2018 AMJ96_PD00206 c3b97a381bedecb0763d9af3b52739c0 84 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 6 60 1.3E-9 T 12-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM AMJ96_PD00206 c3b97a381bedecb0763d9af3b52739c0 84 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 20 53 5.9E-8 T 12-10-2018 AMJ96_PD00206 c3b97a381bedecb0763d9af3b52739c0 84 SUPERFAMILY SSF143120 5 64 6.93E-11 T 12-10-2018 IPR036165 YefM-like superfamily AMJ96_PD00206 c3b97a381bedecb0763d9af3b52739c0 84 Gene3D G3DSA:3.40.1620.10 18 51 3.6E-6 T 12-10-2018 AMJ96_CH01521 598c0b8fe027aa8379121d68eca36bf0 84 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 3 84 4.9E-22 T 12-10-2018 AMJ96_CH01521 598c0b8fe027aa8379121d68eca36bf0 84 Gene3D G3DSA:3.10.20.30 1 84 3.1E-17 T 12-10-2018 IPR012675 Beta-grasp domain superfamily AMJ96_CH01521 598c0b8fe027aa8379121d68eca36bf0 84 Pfam PF02597 ThiS family 5 84 1.5E-15 T 12-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 AMJ96_CH01521 598c0b8fe027aa8379121d68eca36bf0 84 SUPERFAMILY SSF54285 2 84 3.55E-17 T 12-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AMJ96_PB00104 39eccca079ab42cc618da497599a434a 89 Pfam PF01313 Bacterial export proteins, family 3 13 75 8.6E-18 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMJ96_PB00104 39eccca079ab42cc618da497599a434a 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.1E-15 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMJ96_PB00104 39eccca079ab42cc618da497599a434a 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.1E-15 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMJ96_PB00104 39eccca079ab42cc618da497599a434a 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.1E-15 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMJ96_CH03461 b389ac3025d56caef42406495d6bb858 131 SUPERFAMILY SSF46458 7 127 7.4E-31 T 12-10-2018 IPR009050 Globin-like superfamily AMJ96_CH03461 b389ac3025d56caef42406495d6bb858 131 Gene3D G3DSA:1.10.490.10 2 131 1.5E-41 T 12-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AMJ96_CH03461 b389ac3025d56caef42406495d6bb858 131 Pfam PF01152 Bacterial-like globin 7 127 3.6E-44 T 12-10-2018 IPR001486 Truncated hemoglobin GO:0019825 AMJ96_CH02826 dd763627abe9ac3a8e15329dd9f3084a 128 SUPERFAMILY SSF51182 39 114 1.11E-22 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH02826 dd763627abe9ac3a8e15329dd9f3084a 128 Pfam PF07883 Cupin domain 46 110 6.9E-19 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_CH02826 dd763627abe9ac3a8e15329dd9f3084a 128 Gene3D G3DSA:2.60.120.10 9 120 2.2E-22 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH03423 5c2af0370203e68b425ca2b76f88b9df 327 Gene3D G3DSA:3.90.550.10 19 242 5.4E-24 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03423 5c2af0370203e68b425ca2b76f88b9df 327 Pfam PF00535 Glycosyl transferase family 2 26 178 3.6E-12 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_CH03423 5c2af0370203e68b425ca2b76f88b9df 327 SUPERFAMILY SSF53448 22 293 6.94E-33 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH02435 3ff74fca9751a6d6a628edd68b1e33ce 427 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 14 57 1.8E-8 T 12-10-2018 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal AMJ96_CH02435 3ff74fca9751a6d6a628edd68b1e33ce 427 SUPERFAMILY SSF53300 154 327 3.71E-6 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMJ96_CH02435 3ff74fca9751a6d6a628edd68b1e33ce 427 Gene3D G3DSA:3.40.50.410 151 366 1.8E-7 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMJ96_CH00673 6775a64f814934fd7fb912729da4c4ca 83 Gene3D G3DSA:1.10.260.40 5 81 4.3E-19 T 12-10-2018 AMJ96_CH00673 6775a64f814934fd7fb912729da4c4ca 83 SUPERFAMILY SSF47413 14 63 5.63E-8 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH00673 6775a64f814934fd7fb912729da4c4ca 83 Pfam PF01381 Helix-turn-helix 16 44 1.9E-5 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH04322 e0736c3d1d17eb71f06a9ed6b7583a84 362 Pfam PF01018 GTP1/OBG 5 158 2.9E-57 T 12-10-2018 IPR006169 GTP1/OBG domain AMJ96_CH04322 e0736c3d1d17eb71f06a9ed6b7583a84 362 Gene3D G3DSA:2.70.210.12 1 158 7.4E-57 T 12-10-2018 IPR036726 GTP1/OBG domain superfamily AMJ96_CH04322 e0736c3d1d17eb71f06a9ed6b7583a84 362 Gene3D G3DSA:3.40.50.300 159 333 9.2E-48 T 12-10-2018 AMJ96_CH04322 e0736c3d1d17eb71f06a9ed6b7583a84 362 SUPERFAMILY SSF82051 2 158 1.23E-54 T 12-10-2018 IPR036726 GTP1/OBG domain superfamily AMJ96_CH04322 e0736c3d1d17eb71f06a9ed6b7583a84 362 PIRSF PIRSF002401 1 360 2.4E-129 T 12-10-2018 IPR035101 GTP-binding protein, Obg-type AMJ96_CH04322 e0736c3d1d17eb71f06a9ed6b7583a84 362 Pfam PF01926 50S ribosome-binding GTPase 162 276 1.1E-24 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 AMJ96_CH04322 e0736c3d1d17eb71f06a9ed6b7583a84 362 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 325 8.3E-135 T 12-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMJ96_CH04322 e0736c3d1d17eb71f06a9ed6b7583a84 362 SUPERFAMILY SSF52540 152 334 2.39E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04322 e0736c3d1d17eb71f06a9ed6b7583a84 362 ProSitePatterns PS00905 GTP1/OBG family signature. 212 225 - T 12-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 AMJ96_CH04322 e0736c3d1d17eb71f06a9ed6b7583a84 362 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 210 225 4.5E-33 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 AMJ96_CH04322 e0736c3d1d17eb71f06a9ed6b7583a84 362 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 227 245 4.5E-33 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 AMJ96_CH04322 e0736c3d1d17eb71f06a9ed6b7583a84 362 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 4.5E-33 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 AMJ96_CH04322 e0736c3d1d17eb71f06a9ed6b7583a84 362 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 4.5E-33 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 AMJ96_CH04322 e0736c3d1d17eb71f06a9ed6b7583a84 362 Hamap MF_01454 GTPase Obg [obg]. 2 327 44.936 T 12-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AMJ96_PD00245 16cda49e11b2b9db2fd171b9ff7122b9 576 Pfam PF00664 ABC transporter transmembrane region 127 288 2.2E-16 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_PD00245 16cda49e11b2b9db2fd171b9ff7122b9 576 SUPERFAMILY SSF90123 30 334 2.49E-34 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_PD00245 16cda49e11b2b9db2fd171b9ff7122b9 576 Gene3D G3DSA:3.40.50.300 350 572 7.6E-53 T 12-10-2018 AMJ96_PD00245 16cda49e11b2b9db2fd171b9ff7122b9 576 Pfam PF00005 ABC transporter 376 523 1.0E-21 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00245 16cda49e11b2b9db2fd171b9ff7122b9 576 SMART SM00382 385 575 4.9E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00245 16cda49e11b2b9db2fd171b9ff7122b9 576 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 32 564 9.4E-152 T 12-10-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 AMJ96_PD00245 16cda49e11b2b9db2fd171b9ff7122b9 576 Gene3D G3DSA:1.20.1560.10 27 338 1.5E-25 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_PD00245 16cda49e11b2b9db2fd171b9ff7122b9 576 SUPERFAMILY SSF52540 356 566 4.83E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00005 5b3a4cf381b419fa6d8692ec9ac44a23 240 Gene3D G3DSA:3.30.420.10 2 173 1.2E-51 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_CH00005 5b3a4cf381b419fa6d8692ec9ac44a23 240 Pfam PF00929 Exonuclease 4 163 2.5E-36 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMJ96_CH00005 5b3a4cf381b419fa6d8692ec9ac44a23 240 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 2 234 1.4E-70 T 12-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH00005 5b3a4cf381b419fa6d8692ec9ac44a23 240 SMART SM00479 2 172 8.0E-47 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AMJ96_CH00005 5b3a4cf381b419fa6d8692ec9ac44a23 240 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 3 180 1.2E-49 T 12-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH00005 5b3a4cf381b419fa6d8692ec9ac44a23 240 SUPERFAMILY SSF53098 1 170 3.04E-54 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_CH00868 2916a8ce37b0e1323d9ab740d9bea240 347 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 17 324 1.3E-85 T 12-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 AMJ96_CH00868 2916a8ce37b0e1323d9ab740d9bea240 347 SUPERFAMILY SSF52540 45 148 6.28E-10 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00868 2916a8ce37b0e1323d9ab740d9bea240 347 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 4 336 33.383 T 12-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 AMJ96_CH00868 2916a8ce37b0e1323d9ab740d9bea240 347 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 17 301 3.4E-56 T 12-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 AMJ96_CH03698 32c8b5a3d6bcf6a344048224f48507e5 486 Pfam PF01171 PP-loop family 25 205 4.5E-47 T 12-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 AMJ96_CH03698 32c8b5a3d6bcf6a344048224f48507e5 486 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 24 207 8.0E-47 T 12-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMJ96_CH03698 32c8b5a3d6bcf6a344048224f48507e5 486 SUPERFAMILY SSF52402 18 207 1.19E-48 T 12-10-2018 AMJ96_CH03698 32c8b5a3d6bcf6a344048224f48507e5 486 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 12 306 20.029 T 12-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AMJ96_CH03698 32c8b5a3d6bcf6a344048224f48507e5 486 Gene3D G3DSA:3.40.50.620 15 237 9.4E-58 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_PA00184 f4a2a088e366bccde73157375dd72b20 386 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 220 1.2E-22 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AMJ96_PA00184 f4a2a088e366bccde73157375dd72b20 386 SUPERFAMILY SSF56645 1 242 8.25E-67 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 AMJ96_PA00184 f4a2a088e366bccde73157375dd72b20 386 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 233 380 5.6E-47 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AMJ96_PA00184 f4a2a088e366bccde73157375dd72b20 386 Gene3D G3DSA:1.10.540.10 1 119 2.0E-27 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 AMJ96_PA00184 f4a2a088e366bccde73157375dd72b20 386 Gene3D G3DSA:1.20.140.10 237 384 2.1E-51 T 12-10-2018 AMJ96_PA00184 f4a2a088e366bccde73157375dd72b20 386 SUPERFAMILY SSF47203 230 382 1.48E-53 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 AMJ96_PA00184 f4a2a088e366bccde73157375dd72b20 386 Gene3D G3DSA:2.40.110.10 120 236 1.7E-36 T 12-10-2018 AMJ96_PA00184 f4a2a088e366bccde73157375dd72b20 386 PIRSF PIRSF016578 5 87 0.4 T 12-10-2018 AMJ96_PA00184 f4a2a088e366bccde73157375dd72b20 386 PIRSF PIRSF016578 125 230 0.0058 T 12-10-2018 AMJ96_PA00184 f4a2a088e366bccde73157375dd72b20 386 PIRSF PIRSF016578 234 382 1.4E-11 T 12-10-2018 AMJ96_PA00184 f4a2a088e366bccde73157375dd72b20 386 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 339 358 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMJ96_PA00184 f4a2a088e366bccde73157375dd72b20 386 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AMJ96_PA00184 f4a2a088e366bccde73157375dd72b20 386 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 1.0E-22 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AMJ96_PB00416 eccca5c68f26c2b087a72a2f4b642939 267 Gene3D G3DSA:3.30.420.10 96 235 2.0E-23 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_PB00416 eccca5c68f26c2b087a72a2f4b642939 267 Pfam PF13276 HTH-like domain 30 82 3.2E-11 T 12-10-2018 IPR025948 HTH-like domain AMJ96_PB00416 eccca5c68f26c2b087a72a2f4b642939 267 Pfam PF13683 Integrase core domain 188 253 3.1E-27 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMJ96_PB00416 eccca5c68f26c2b087a72a2f4b642939 267 SUPERFAMILY SSF53098 99 254 1.77E-38 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_CH03893 21758f14c137705c9b95d6400e984a93 464 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 15 29 - T 12-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site AMJ96_CH03893 21758f14c137705c9b95d6400e984a93 464 Pfam PF00232 Glycosyl hydrolase family 1 9 447 2.7E-172 T 12-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMJ96_CH03893 21758f14c137705c9b95d6400e984a93 464 SUPERFAMILY SSF51445 8 446 1.9E-158 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH03893 21758f14c137705c9b95d6400e984a93 464 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 355 363 - T 12-10-2018 IPR018120 Glycoside hydrolase family 1, active site AMJ96_CH03893 21758f14c137705c9b95d6400e984a93 464 Gene3D G3DSA:3.20.20.80 3 449 1.4E-166 T 12-10-2018 AMJ96_CH03893 21758f14c137705c9b95d6400e984a93 464 TIGRFAM TIGR03356 BGL: beta-galactosidase 11 442 4.6E-183 T 12-10-2018 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7091|MetaCyc: PWY-7092|MetaCyc: PWY-7913 AMJ96_CH03893 21758f14c137705c9b95d6400e984a93 464 PRINTS PR00131 Glycosyl hydrolase family 1 signature 420 432 1.4E-20 T 12-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMJ96_CH03893 21758f14c137705c9b95d6400e984a93 464 PRINTS PR00131 Glycosyl hydrolase family 1 signature 396 413 1.4E-20 T 12-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMJ96_CH03893 21758f14c137705c9b95d6400e984a93 464 PRINTS PR00131 Glycosyl hydrolase family 1 signature 375 386 1.4E-20 T 12-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMJ96_CH03893 21758f14c137705c9b95d6400e984a93 464 PRINTS PR00131 Glycosyl hydrolase family 1 signature 355 363 1.4E-20 T 12-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMJ96_CH03893 21758f14c137705c9b95d6400e984a93 464 PRINTS PR00131 Glycosyl hydrolase family 1 signature 290 304 1.4E-20 T 12-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AMJ96_CH02122 9786dfe1367f5f188370e753f4cf698b 176 SUPERFAMILY SSF52218 1 136 1.39E-28 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_CH02122 9786dfe1367f5f188370e753f4cf698b 176 Pfam PF03358 NADPH-dependent FMN reductase 1 126 7.4E-25 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMJ96_CH02122 9786dfe1367f5f188370e753f4cf698b 176 Gene3D G3DSA:3.40.50.360 1 176 2.8E-35 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_PD00590 f85f86ed7e42f69228f9e187b61bd77f 342 Pfam PF12833 Helix-turn-helix domain 245 324 1.2E-16 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PD00590 f85f86ed7e42f69228f9e187b61bd77f 342 Gene3D G3DSA:1.10.10.60 224 327 1.4E-22 T 12-10-2018 AMJ96_PD00590 f85f86ed7e42f69228f9e187b61bd77f 342 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 276 319 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_PD00590 f85f86ed7e42f69228f9e187b61bd77f 342 SUPERFAMILY SSF46689 223 270 2.33E-5 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00590 f85f86ed7e42f69228f9e187b61bd77f 342 SMART SM00342 239 323 9.6E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH01726 92588c53fa675cddb12b9c685448daf2 102 SMART SM00739 3 30 1.0E-5 T 12-10-2018 IPR005824 KOW AMJ96_CH01726 92588c53fa675cddb12b9c685448daf2 102 Gene3D G3DSA:2.30.30.30 1 101 1.8E-34 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 AMJ96_CH01726 92588c53fa675cddb12b9c685448daf2 102 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 100 4.7E-35 T 12-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01726 92588c53fa675cddb12b9c685448daf2 102 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 2 94 21.505 T 12-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01726 92588c53fa675cddb12b9c685448daf2 102 Pfam PF00467 KOW motif 6 36 8.3E-7 T 12-10-2018 IPR005824 KOW AMJ96_CH01726 92588c53fa675cddb12b9c685448daf2 102 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 39 100 4.6E-25 T 12-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01726 92588c53fa675cddb12b9c685448daf2 102 SUPERFAMILY SSF50104 3 99 5.27E-31 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMJ96_CH01404 78d5206e158553c1c90350a4b743c980 269 SUPERFAMILY SSF53448 3 225 7.66E-18 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH01404 78d5206e158553c1c90350a4b743c980 269 Gene3D G3DSA:3.90.550.10 1 173 2.0E-9 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH01404 78d5206e158553c1c90350a4b743c980 269 Pfam PF00535 Glycosyl transferase family 2 5 115 4.6E-6 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_CH02205 0606fda6cc8909f59968b3eb4e3a2ab7 477 Gene3D G3DSA:3.40.605.10 11 471 4.5E-162 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_CH02205 0606fda6cc8909f59968b3eb4e3a2ab7 477 SUPERFAMILY SSF53720 4 474 4.32E-159 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_CH02205 0606fda6cc8909f59968b3eb4e3a2ab7 477 Pfam PF00171 Aldehyde dehydrogenase family 15 473 6.2E-155 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_CH02205 0606fda6cc8909f59968b3eb4e3a2ab7 477 Gene3D G3DSA:3.40.309.10 254 443 4.5E-162 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_CH02205 0606fda6cc8909f59968b3eb4e3a2ab7 477 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 277 288 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMJ96_PB00148 8587c197a7c6e6b0c570be869ea93368 837 Pfam PF00672 HAMP domain 444 491 3.4E-11 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PB00148 8587c197a7c6e6b0c570be869ea93368 837 SUPERFAMILY SSF158472 445 491 3.92E-9 T 12-10-2018 AMJ96_PB00148 8587c197a7c6e6b0c570be869ea93368 837 SUPERFAMILY SSF58104 543 827 2.62E-64 T 12-10-2018 AMJ96_PB00148 8587c197a7c6e6b0c570be869ea93368 837 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 640 789 1.2E-43 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_PB00148 8587c197a7c6e6b0c570be869ea93368 837 SMART SM00283 576 823 8.3E-86 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_PB00148 8587c197a7c6e6b0c570be869ea93368 837 Gene3D G3DSA:1.10.8.500 443 495 2.3E-14 T 12-10-2018 AMJ96_PB00148 8587c197a7c6e6b0c570be869ea93368 837 Gene3D G3DSA:1.10.287.950 523 825 1.9E-73 T 12-10-2018 AMJ96_PB00148 8587c197a7c6e6b0c570be869ea93368 837 SMART SM00304 523 575 31.0 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PB00148 8587c197a7c6e6b0c570be869ea93368 837 SMART SM00304 442 495 1.3E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH04375 8f0c4152299074a71221b2c96a6cd795 293 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 36 207 2.6E-57 T 12-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 AMJ96_CH04375 8f0c4152299074a71221b2c96a6cd795 293 Gene3D G3DSA:1.10.10.2830 114 225 7.1E-38 T 12-10-2018 AMJ96_CH04375 8f0c4152299074a71221b2c96a6cd795 293 SMART SM00470 37 127 2.4E-32 T 12-10-2018 IPR003115 ParB/Sulfiredoxin AMJ96_CH04375 8f0c4152299074a71221b2c96a6cd795 293 Gene3D G3DSA:3.90.1530.30 50 113 1.2E-27 T 12-10-2018 AMJ96_CH04375 8f0c4152299074a71221b2c96a6cd795 293 SUPERFAMILY SSF110849 37 173 8.89E-34 T 12-10-2018 IPR036086 ParB/Sulfiredoxin superfamily AMJ96_CH04375 8f0c4152299074a71221b2c96a6cd795 293 Pfam PF02195 ParB-like nuclease domain 38 126 6.2E-26 T 12-10-2018 IPR003115 ParB/Sulfiredoxin AMJ96_CH02378 410f358670ed091571bf1afc555c41c4 276 Gene3D G3DSA:3.40.1280.10 11 175 2.4E-53 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMJ96_CH02378 410f358670ed091571bf1afc555c41c4 276 Pfam PF00588 SpoU rRNA Methylase family 16 166 4.8E-33 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMJ96_CH02378 410f358670ed091571bf1afc555c41c4 276 Gene3D G3DSA:1.10.8.590 181 259 1.2E-8 T 12-10-2018 AMJ96_CH02378 410f358670ed091571bf1afc555c41c4 276 PIRSF PIRSF004808 9 257 3.1E-85 T 12-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 AMJ96_CH02378 410f358670ed091571bf1afc555c41c4 276 SUPERFAMILY SSF75217 15 171 5.56E-33 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases AMJ96_CH02378 410f358670ed091571bf1afc555c41c4 276 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 16 249 1.4E-54 T 12-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 AMJ96_CH00585 720b0c6e6a62dc78a7a0fd0b34cd6a3e 145 Gene3D G3DSA:1.10.1200.120 1 143 5.1E-42 T 12-10-2018 IPR036019 Gated mechanosensitive channel AMJ96_CH00585 720b0c6e6a62dc78a7a0fd0b34cd6a3e 145 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 11 24 - T 12-10-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site AMJ96_CH00585 720b0c6e6a62dc78a7a0fd0b34cd6a3e 145 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 1 141 8.0E-38 T 12-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 AMJ96_CH00585 720b0c6e6a62dc78a7a0fd0b34cd6a3e 145 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 98 107 1.3E-9 T 12-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 AMJ96_CH00585 720b0c6e6a62dc78a7a0fd0b34cd6a3e 145 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 89 97 1.3E-9 T 12-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 AMJ96_CH00585 720b0c6e6a62dc78a7a0fd0b34cd6a3e 145 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 4 18 1.3E-9 T 12-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 AMJ96_CH00585 720b0c6e6a62dc78a7a0fd0b34cd6a3e 145 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 1 139 4.9E-44 T 12-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L AMJ96_CH00585 720b0c6e6a62dc78a7a0fd0b34cd6a3e 145 SUPERFAMILY SSF81330 11 136 2.88E-35 T 12-10-2018 IPR036019 Gated mechanosensitive channel AMJ96_CH00585 720b0c6e6a62dc78a7a0fd0b34cd6a3e 145 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 1 141 23.617 T 12-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 AMJ96_CH03933 9765473609a7ac493107843668437e27 229 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 184 2.8E-29 T 12-10-2018 AMJ96_CH03933 9765473609a7ac493107843668437e27 229 SUPERFAMILY SSF56784 6 220 9.95E-55 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_CH03933 9765473609a7ac493107843668437e27 229 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 9 183 1.2E-18 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH03933 9765473609a7ac493107843668437e27 229 Gene3D G3DSA:1.10.150.240 21 87 2.5E-58 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMJ96_CH03933 9765473609a7ac493107843668437e27 229 Gene3D G3DSA:3.40.50.1000 9 192 2.5E-58 T 12-10-2018 IPR023214 HAD superfamily AMJ96_CH00984 066ed7aaf12bb0714c71cf218e499793 151 Hamap MF_00042 Ribonuclease H [rnhA]. 1 149 34.966 T 12-10-2018 IPR022892 Ribonuclease HI GO:0004523 AMJ96_CH00984 066ed7aaf12bb0714c71cf218e499793 151 Gene3D G3DSA:3.30.420.10 1 148 1.2E-60 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_CH00984 066ed7aaf12bb0714c71cf218e499793 151 SUPERFAMILY SSF53098 1 141 8.35E-60 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_CH00984 066ed7aaf12bb0714c71cf218e499793 151 Pfam PF00075 RNase H 2 140 4.2E-51 T 12-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 AMJ96_PD00629 3253a4e187333f4e1c953e019ef242e6 178 Pfam PF13610 DDE domain 76 169 2.4E-24 T 12-10-2018 IPR032874 DDE domain AMJ96_CH02157 22b84c41cca4d35f1f3fdaaad6cdffb6 223 SUPERFAMILY SSF52833 4 214 5.27E-52 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH02157 22b84c41cca4d35f1f3fdaaad6cdffb6 223 Pfam PF01323 DSBA-like thioredoxin domain 5 208 3.0E-47 T 12-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 AMJ96_CH02157 22b84c41cca4d35f1f3fdaaad6cdffb6 223 Gene3D G3DSA:3.40.30.10 1 212 2.4E-73 T 12-10-2018 AMJ96_CH03080 344ca4ee1fd669632708780463cf9b3a 303 SUPERFAMILY SSF161098 37 290 2.34E-47 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03080 344ca4ee1fd669632708780463cf9b3a 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 292 1.3E-9 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03080 344ca4ee1fd669632708780463cf9b3a 303 Gene3D G3DSA:1.10.3720.10 27 301 7.7E-43 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00556 91fd0792f4e60febd305a7a8591e0b02 178 Gene3D G3DSA:3.30.1330.60 42 175 1.2E-28 T 12-10-2018 IPR036737 OmpA-like domain superfamily AMJ96_PD00556 91fd0792f4e60febd305a7a8591e0b02 178 PRINTS PR01021 OMPA domain signature 116 132 4.2E-5 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMJ96_PD00556 91fd0792f4e60febd305a7a8591e0b02 178 PRINTS PR01021 OMPA domain signature 71 93 4.2E-5 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMJ96_PD00556 91fd0792f4e60febd305a7a8591e0b02 178 PRINTS PR01021 OMPA domain signature 101 116 4.2E-5 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMJ96_PD00556 91fd0792f4e60febd305a7a8591e0b02 178 Pfam PF00691 OmpA family 70 165 2.2E-17 T 12-10-2018 IPR006665 OmpA-like domain AMJ96_PD00556 91fd0792f4e60febd305a7a8591e0b02 178 SUPERFAMILY SSF103088 58 168 1.7E-28 T 12-10-2018 IPR036737 OmpA-like domain superfamily AMJ96_PD00034 3574e0ff6afd809876ec61d8c59b5bfb 334 Gene3D G3DSA:3.30.1180.20 188 334 1.2E-50 T 12-10-2018 AMJ96_PD00034 3574e0ff6afd809876ec61d8c59b5bfb 334 Gene3D G3DSA:3.40.50.10440 13 187 4.2E-54 T 12-10-2018 AMJ96_PD00034 3574e0ff6afd809876ec61d8c59b5bfb 334 Pfam PF02733 Dak1 domain 19 329 3.7E-115 T 12-10-2018 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AMJ96_PD00034 3574e0ff6afd809876ec61d8c59b5bfb 334 SUPERFAMILY SSF82549 13 333 1.02E-113 T 12-10-2018 AMJ96_CH00291 3df82485a12895563653ba57829c4d1b 165 SUPERFAMILY SSF46785 14 163 2.56E-36 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00291 3df82485a12895563653ba57829c4d1b 165 SMART SM00347 47 150 8.2E-27 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00291 3df82485a12895563653ba57829c4d1b 165 Pfam PF01047 MarR family 54 115 3.4E-14 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00291 3df82485a12895563653ba57829c4d1b 165 Gene3D G3DSA:1.10.10.10 1 165 5.2E-43 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00291 3df82485a12895563653ba57829c4d1b 165 ProSitePatterns PS01117 MarR-type HTH domain signature. 89 123 - T 12-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AMJ96_CH00291 3df82485a12895563653ba57829c4d1b 165 PRINTS PR00598 Bacterial regulatory protein MarR family signature 110 126 2.0E-14 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00291 3df82485a12895563653ba57829c4d1b 165 PRINTS PR00598 Bacterial regulatory protein MarR family signature 74 90 2.0E-14 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00291 3df82485a12895563653ba57829c4d1b 165 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 106 2.0E-14 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00291 3df82485a12895563653ba57829c4d1b 165 PRINTS PR00598 Bacterial regulatory protein MarR family signature 140 160 2.0E-14 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH01336 9c82cd0fe3a9fa3d7e28904079102da3 985 SUPERFAMILY SSF81593 834 979 3.84E-24 T 12-10-2018 AMJ96_CH01336 9c82cd0fe3a9fa3d7e28904079102da3 985 SUPERFAMILY SSF81301 30 314 9.09E-65 T 12-10-2018 AMJ96_CH01336 9c82cd0fe3a9fa3d7e28904079102da3 985 Gene3D G3DSA:3.30.460.100 63 306 3.8E-56 T 12-10-2018 AMJ96_CH01336 9c82cd0fe3a9fa3d7e28904079102da3 985 Gene3D G3DSA:3.30.460.100 588 830 3.3E-68 T 12-10-2018 AMJ96_CH01336 9c82cd0fe3a9fa3d7e28904079102da3 985 Gene3D G3DSA:1.20.120.330 831 955 2.5E-13 T 12-10-2018 AMJ96_CH01336 9c82cd0fe3a9fa3d7e28904079102da3 985 Gene3D G3DSA:1.20.120.330 313 471 3.5E-53 T 12-10-2018 AMJ96_CH01336 9c82cd0fe3a9fa3d7e28904079102da3 985 SUPERFAMILY SSF81593 315 467 4.63E-43 T 12-10-2018 AMJ96_CH01336 9c82cd0fe3a9fa3d7e28904079102da3 985 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 56 305 1.4E-60 T 12-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 AMJ96_CH01336 9c82cd0fe3a9fa3d7e28904079102da3 985 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 580 823 2.9E-73 T 12-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 AMJ96_CH01336 9c82cd0fe3a9fa3d7e28904079102da3 985 Pfam PF08335 GlnD PII-uridylyltransferase 326 467 5.3E-40 T 12-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 AMJ96_CH01336 9c82cd0fe3a9fa3d7e28904079102da3 985 SUPERFAMILY SSF81301 551 832 2.75E-76 T 12-10-2018 AMJ96_CH01336 9c82cd0fe3a9fa3d7e28904079102da3 985 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 51 970 18.005 T 12-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 AMJ96_PB00169 54f53b318c0dc69e35c10e40b8e66f2a 426 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 7 198 3.8E-87 T 12-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMJ96_PB00169 54f53b318c0dc69e35c10e40b8e66f2a 426 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 203 39.934 T 12-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMJ96_PB00169 54f53b318c0dc69e35c10e40b8e66f2a 426 Gene3D G3DSA:3.40.50.10990 206 377 2.0E-69 T 12-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMJ96_PB00169 54f53b318c0dc69e35c10e40b8e66f2a 426 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 209 398 2.0E-71 T 12-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMJ96_PB00169 54f53b318c0dc69e35c10e40b8e66f2a 426 PIRSF PIRSF001259 1 407 6.3E-169 T 12-10-2018 AMJ96_PB00169 54f53b318c0dc69e35c10e40b8e66f2a 426 Pfam PF00925 GTP cyclohydrolase II 210 372 1.2E-63 T 12-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMJ96_PB00169 54f53b318c0dc69e35c10e40b8e66f2a 426 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 3 198 1.4E-77 T 12-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AMJ96_PB00169 54f53b318c0dc69e35c10e40b8e66f2a 426 Gene3D G3DSA:3.90.870.10 1 205 3.0E-91 T 12-10-2018 AMJ96_PB00169 54f53b318c0dc69e35c10e40b8e66f2a 426 SUPERFAMILY SSF142695 206 375 1.7E-58 T 12-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMJ96_PB00169 54f53b318c0dc69e35c10e40b8e66f2a 426 Hamap MF_01283 Riboflavin biosynthesis protein RibBA [ribBA]. 2 396 50.681 T 12-10-2018 IPR016299 Riboflavin biosynthesis protein RibBA GO:0009231 KEGG: 00740+3.5.4.25+4.1.99.12|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMJ96_PB00169 54f53b318c0dc69e35c10e40b8e66f2a 426 SUPERFAMILY SSF55821 2 201 1.76E-84 T 12-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily AMJ96_PB00169 54f53b318c0dc69e35c10e40b8e66f2a 426 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 204 400 39.725 T 12-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 AMJ96_PC00001 edfc1ac82c6f3b57fe16268929c50811 375 Pfam PF07756 Protein of unknown function (DUF1612) 188 313 1.3E-51 T 12-10-2018 IPR011670 Protein of unknown function DUF1612 AMJ96_PC00001 edfc1ac82c6f3b57fe16268929c50811 375 Pfam PF11972 HTH DNA binding domain 322 375 1.3E-29 T 12-10-2018 IPR021068 HTH DNA binding domain AMJ96_CH01243 94a990253ce894f2485989094acec96f 243 Pfam PF01925 Sulfite exporter TauE/SafE 9 238 1.2E-41 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMJ96_CH00446 63c05986fdeaf7355ca0503d063e0224 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 22 37 6.5E-11 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH00446 63c05986fdeaf7355ca0503d063e0224 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 69 6.5E-11 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH00446 63c05986fdeaf7355ca0503d063e0224 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 69 84 6.5E-11 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH00446 63c05986fdeaf7355ca0503d063e0224 121 Gene3D G3DSA:1.10.10.10 4 104 6.4E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00446 63c05986fdeaf7355ca0503d063e0224 121 SMART SM00418 20 98 7.2E-21 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH00446 63c05986fdeaf7355ca0503d063e0224 121 SUPERFAMILY SSF46785 18 101 1.19E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00446 63c05986fdeaf7355ca0503d063e0224 121 Pfam PF12840 Helix-turn-helix domain 19 78 6.8E-16 T 12-10-2018 AMJ96_CH01512 1afc8502d34600b26e1350ddd908f95a 627 Pfam PF00005 ABC transporter 17 175 1.1E-23 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH01512 1afc8502d34600b26e1350ddd908f95a 627 Gene3D G3DSA:3.40.50.300 1 257 3.8E-59 T 12-10-2018 AMJ96_CH01512 1afc8502d34600b26e1350ddd908f95a 627 SUPERFAMILY SSF52540 2 240 9.16E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01512 1afc8502d34600b26e1350ddd908f95a 627 ProSitePatterns PS00211 ABC transporters family signature. 430 444 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH01512 1afc8502d34600b26e1350ddd908f95a 627 Gene3D G3DSA:3.40.50.300 311 519 1.5E-46 T 12-10-2018 AMJ96_CH01512 1afc8502d34600b26e1350ddd908f95a 627 Gene3D G3DSA:1.10.287.380 534 622 4.4E-5 T 12-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 AMJ96_CH01512 1afc8502d34600b26e1350ddd908f95a 627 SUPERFAMILY SSF52540 293 508 1.25E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01512 1afc8502d34600b26e1350ddd908f95a 627 Pfam PF16326 ABC transporter C-terminal domain 556 618 4.3E-9 T 12-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 AMJ96_CH01512 1afc8502d34600b26e1350ddd908f95a 627 SMART SM00382 26 220 2.2E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01512 1afc8502d34600b26e1350ddd908f95a 627 SMART SM00382 336 503 5.2E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01512 1afc8502d34600b26e1350ddd908f95a 627 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH01512 1afc8502d34600b26e1350ddd908f95a 627 Pfam PF12848 ABC transporter 214 290 1.5E-25 T 12-10-2018 IPR032781 ABC-transporter extension domain AMJ96_CH01512 1afc8502d34600b26e1350ddd908f95a 627 Pfam PF00005 ABC transporter 327 458 1.2E-20 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03212 fee038f5c83be4bb4b964014e89b5a73 306 Pfam PF01882 Protein of unknown function DUF58 54 140 1.3E-17 T 12-10-2018 IPR002881 Domain of unknown function DUF58 AMJ96_CH00931 8f73a1f0023fe69ccfe491da8a5a43e1 416 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 348 378 - T 12-10-2018 IPR030390 RNA methyltransferase TrmA, active site AMJ96_CH00931 8f73a1f0023fe69ccfe491da8a5a43e1 416 Gene3D G3DSA:3.40.1350.30 120 252 9.8E-78 T 12-10-2018 AMJ96_CH00931 8f73a1f0023fe69ccfe491da8a5a43e1 416 SUPERFAMILY SSF53335 57 414 2.11E-55 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH00931 8f73a1f0023fe69ccfe491da8a5a43e1 416 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 248 414 6.2E-12 T 12-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 AMJ96_CH00931 8f73a1f0023fe69ccfe491da8a5a43e1 416 Gene3D G3DSA:2.40.50.140 2 68 1.1E-12 T 12-10-2018 AMJ96_CH00931 8f73a1f0023fe69ccfe491da8a5a43e1 416 Gene3D G3DSA:3.40.50.150 76 411 9.8E-78 T 12-10-2018 AMJ96_CH00931 8f73a1f0023fe69ccfe491da8a5a43e1 416 SUPERFAMILY SSF50249 5 47 6.28E-7 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH01533 4e2869f7318d3a8c6d1839a695dbdd4c 374 Pfam PF01594 AI-2E family transporter 17 343 5.9E-67 T 12-10-2018 IPR002549 Transmembrane protein TqsA-like AMJ96_CH00583 a0e31a1dd2896ec4e29b082bfc3b2d82 185 SUPERFAMILY SSF48498 79 181 1.22E-15 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH00583 a0e31a1dd2896ec4e29b082bfc3b2d82 185 Gene3D G3DSA:1.10.10.60 10 57 2.4E-17 T 12-10-2018 AMJ96_CH00583 a0e31a1dd2896ec4e29b082bfc3b2d82 185 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 65 1.3E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00583 a0e31a1dd2896ec4e29b082bfc3b2d82 185 Gene3D G3DSA:1.10.357.10 60 183 2.3E-18 T 12-10-2018 AMJ96_CH00583 a0e31a1dd2896ec4e29b082bfc3b2d82 185 SUPERFAMILY SSF46689 11 71 2.52E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH00583 a0e31a1dd2896ec4e29b082bfc3b2d82 185 Pfam PF16859 Bacterial transcriptional repressor C-terminal 78 179 2.7E-17 T 12-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMJ96_CH03668 1fdb9830af1ec88a9a60aeffd2f69478 622 SUPERFAMILY SSF47384 392 462 1.88E-8 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH03668 1fdb9830af1ec88a9a60aeffd2f69478 622 SMART SM00388 394 462 7.0E-4 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH03668 1fdb9830af1ec88a9a60aeffd2f69478 622 Gene3D G3DSA:3.30.450.20 69 190 1.1E-72 T 12-10-2018 AMJ96_CH03668 1fdb9830af1ec88a9a60aeffd2f69478 622 PIRSF PIRSF036431 5 621 4.0E-208 T 12-10-2018 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) AMJ96_CH03668 1fdb9830af1ec88a9a60aeffd2f69478 622 SMART SM00387 504 614 1.0E-28 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH03668 1fdb9830af1ec88a9a60aeffd2f69478 622 Gene3D G3DSA:1.10.287.130 370 457 3.1E-17 T 12-10-2018 AMJ96_CH03668 1fdb9830af1ec88a9a60aeffd2f69478 622 Gene3D G3DSA:3.30.450.20 58 294 1.1E-72 T 12-10-2018 AMJ96_CH03668 1fdb9830af1ec88a9a60aeffd2f69478 622 SUPERFAMILY SSF103190 68 202 1.24E-20 T 12-10-2018 IPR029151 Periplasmic sensor-like domain superfamily AMJ96_CH03668 1fdb9830af1ec88a9a60aeffd2f69478 622 Gene3D G3DSA:3.30.565.10 465 616 1.8E-38 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH03668 1fdb9830af1ec88a9a60aeffd2f69478 622 SUPERFAMILY SSF55874 453 610 3.27E-38 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH03668 1fdb9830af1ec88a9a60aeffd2f69478 622 Pfam PF02743 Cache domain 47 227 1.4E-14 T 12-10-2018 IPR033479 Double Cache domain 1 AMJ96_CH03668 1fdb9830af1ec88a9a60aeffd2f69478 622 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 506 611 1.8E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH03668 1fdb9830af1ec88a9a60aeffd2f69478 622 Pfam PF00512 His Kinase A (phospho-acceptor) domain 395 459 1.7E-6 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH03668 1fdb9830af1ec88a9a60aeffd2f69478 622 PRINTS PR00344 Bacterial sensor protein C-terminal signature 543 557 4.1E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03668 1fdb9830af1ec88a9a60aeffd2f69478 622 PRINTS PR00344 Bacterial sensor protein C-terminal signature 574 592 4.1E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03668 1fdb9830af1ec88a9a60aeffd2f69478 622 PRINTS PR00344 Bacterial sensor protein C-terminal signature 598 611 4.1E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03668 1fdb9830af1ec88a9a60aeffd2f69478 622 PRINTS PR00344 Bacterial sensor protein C-terminal signature 561 571 4.1E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03651 242ab44d8d83e19aa18ee3a6ba865997 275 SUPERFAMILY SSF161098 9 268 2.8E-48 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03651 242ab44d8d83e19aa18ee3a6ba865997 275 Gene3D G3DSA:1.10.3720.10 6 274 9.6E-50 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03651 242ab44d8d83e19aa18ee3a6ba865997 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 269 2.1E-10 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00205 e9b72f983fc674a4047f0ea48851413b 193 Pfam PF07811 TadE-like protein 23 64 1.2E-7 T 12-10-2018 IPR012495 TadE-like AMJ96_CH00199 6ac266c2bfb4af971441db5bc71d3b1a 258 Pfam PF01791 DeoC/LacD family aldolase 17 208 2.0E-32 T 12-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AMJ96_CH00199 6ac266c2bfb4af971441db5bc71d3b1a 258 SUPERFAMILY SSF51569 13 243 3.56E-75 T 12-10-2018 AMJ96_CH00199 6ac266c2bfb4af971441db5bc71d3b1a 258 SMART SM01133 12 243 1.8E-71 T 12-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AMJ96_CH00199 6ac266c2bfb4af971441db5bc71d3b1a 258 Gene3D G3DSA:3.20.20.70 4 258 5.4E-90 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH00199 6ac266c2bfb4af971441db5bc71d3b1a 258 PIRSF PIRSF001357 7 250 2.1E-71 T 12-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AMJ96_CH00199 6ac266c2bfb4af971441db5bc71d3b1a 258 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 14 226 1.2E-64 T 12-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AMJ96_CH02543 61e6364e826758b3c556cac71122e62e 401 Gene3D G3DSA:3.40.47.10 8 269 9.6E-35 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH02543 61e6364e826758b3c556cac71122e62e 401 SUPERFAMILY SSF53901 236 397 4.22E-13 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH02543 61e6364e826758b3c556cac71122e62e 401 SUPERFAMILY SSF53901 6 262 3.84E-32 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_CH02543 61e6364e826758b3c556cac71122e62e 401 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 6 257 8.3E-17 T 12-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AMJ96_CH04102 9c1454daa9223c518451269308c69ed7 81 Pfam PF11390 NADH-dependant formate dehydrogenase delta subunit FdsD 8 66 4.3E-28 T 12-10-2018 IPR021074 Formate dehydrogenase, delta subunit AMJ96_CH02731 ad4e997a52cba84b428dcb1abb421f5e 197 Gene3D G3DSA:3.40.630.30 3 194 4.2E-16 T 12-10-2018 AMJ96_CH02731 ad4e997a52cba84b428dcb1abb421f5e 197 SUPERFAMILY SSF55729 82 171 1.76E-15 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH02731 ad4e997a52cba84b428dcb1abb421f5e 197 Pfam PF13302 Acetyltransferase (GNAT) domain 86 168 2.3E-9 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH00758 06cb46fcfe24835f858bee8c1fa2e47d 365 SUPERFAMILY SSF53850 26 364 3.95E-99 T 12-10-2018 AMJ96_CH00758 06cb46fcfe24835f858bee8c1fa2e47d 365 Gene3D G3DSA:3.40.190.10 29 333 3.9E-132 T 12-10-2018 AMJ96_CH00758 06cb46fcfe24835f858bee8c1fa2e47d 365 Pfam PF13416 Bacterial extracellular solute-binding protein 43 330 9.8E-31 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH00758 06cb46fcfe24835f858bee8c1fa2e47d 365 Gene3D G3DSA:3.40.190.10 133 359 3.9E-132 T 12-10-2018 AMJ96_CH00758 06cb46fcfe24835f858bee8c1fa2e47d 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 177 196 3.6E-65 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMJ96_CH00758 06cb46fcfe24835f858bee8c1fa2e47d 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 214 233 3.6E-65 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMJ96_CH00758 06cb46fcfe24835f858bee8c1fa2e47d 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 124 140 3.6E-65 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMJ96_CH00758 06cb46fcfe24835f858bee8c1fa2e47d 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 91 104 3.6E-65 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMJ96_CH00758 06cb46fcfe24835f858bee8c1fa2e47d 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 32 48 3.6E-65 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMJ96_CH00758 06cb46fcfe24835f858bee8c1fa2e47d 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 48 69 3.6E-65 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMJ96_CH00758 06cb46fcfe24835f858bee8c1fa2e47d 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 75 89 3.6E-65 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMJ96_CH00758 06cb46fcfe24835f858bee8c1fa2e47d 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 264 283 3.6E-65 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMJ96_CH00758 06cb46fcfe24835f858bee8c1fa2e47d 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 309 335 3.6E-65 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMJ96_CH00758 06cb46fcfe24835f858bee8c1fa2e47d 365 PIRSF PIRSF019574 1 365 3.8E-142 T 12-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AMJ96_PC00061 f208db04e07f489b58bfa4027a598709 362 Pfam PF00534 Glycosyl transferases group 1 187 334 1.1E-23 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 AMJ96_PC00061 f208db04e07f489b58bfa4027a598709 362 SUPERFAMILY SSF53756 14 355 2.29E-46 T 12-10-2018 AMJ96_PC00061 f208db04e07f489b58bfa4027a598709 362 Gene3D G3DSA:3.40.50.2000 16 348 3.0E-39 T 12-10-2018 AMJ96_PC00061 f208db04e07f489b58bfa4027a598709 362 Gene3D G3DSA:3.40.50.2000 167 340 3.0E-39 T 12-10-2018 AMJ96_CH00543 ac28b4f63e7977a61f5a58c98fe5ce9a 273 Gene3D G3DSA:3.40.50.720 2 249 3.6E-64 T 12-10-2018 AMJ96_CH00543 ac28b4f63e7977a61f5a58c98fe5ce9a 273 Pfam PF00106 short chain dehydrogenase 5 189 1.9E-48 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00543 ac28b4f63e7977a61f5a58c98fe5ce9a 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 8.0E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00543 ac28b4f63e7977a61f5a58c98fe5ce9a 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 8.0E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00543 ac28b4f63e7977a61f5a58c98fe5ce9a 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 8.0E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00543 ac28b4f63e7977a61f5a58c98fe5ce9a 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 8.0E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00543 ac28b4f63e7977a61f5a58c98fe5ce9a 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 5.2E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00543 ac28b4f63e7977a61f5a58c98fe5ce9a 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 164 5.2E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00543 ac28b4f63e7977a61f5a58c98fe5ce9a 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 5.2E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00543 ac28b4f63e7977a61f5a58c98fe5ce9a 273 SUPERFAMILY SSF51735 3 261 9.59E-62 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03082 67ab6f30633b3d1727693b678c22ae8f 362 Gene3D G3DSA:2.40.50.940 225 354 9.4E-12 T 12-10-2018 AMJ96_CH03082 67ab6f30633b3d1727693b678c22ae8f 362 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03082 67ab6f30633b3d1727693b678c22ae8f 362 Pfam PF00005 ABC transporter 23 164 5.3E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03082 67ab6f30633b3d1727693b678c22ae8f 362 SUPERFAMILY SSF50331 240 357 2.69E-12 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH03082 67ab6f30633b3d1727693b678c22ae8f 362 Gene3D G3DSA:2.40.50.140 287 349 9.4E-12 T 12-10-2018 AMJ96_CH03082 67ab6f30633b3d1727693b678c22ae8f 362 Gene3D G3DSA:3.40.50.300 7 224 2.6E-60 T 12-10-2018 AMJ96_CH03082 67ab6f30633b3d1727693b678c22ae8f 362 SUPERFAMILY SSF52540 7 246 7.56E-82 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03082 67ab6f30633b3d1727693b678c22ae8f 362 Pfam PF08402 TOBE domain 280 357 2.3E-13 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_CH03082 67ab6f30633b3d1727693b678c22ae8f 362 SMART SM00382 31 230 4.0E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01990 9f2c2950ec99e88f3aca7643bdaf38b5 155 SUPERFAMILY SSF54637 14 154 8.64E-49 T 12-10-2018 IPR029069 HotDog domain superfamily AMJ96_CH01990 9f2c2950ec99e88f3aca7643bdaf38b5 155 Pfam PF07977 FabA-like domain 21 143 8.3E-37 T 12-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMJ96_CH01990 9f2c2950ec99e88f3aca7643bdaf38b5 155 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 13 148 1.1E-58 T 12-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMJ96_CH01990 9f2c2950ec99e88f3aca7643bdaf38b5 155 Gene3D G3DSA:3.10.129.10 4 155 3.2E-64 T 12-10-2018 AMJ96_CH01990 9f2c2950ec99e88f3aca7643bdaf38b5 155 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 12 151 33.131 T 12-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMJ96_CH01803 1d90b904e3e59e6032b7c64fea942bf6 1270 SUPERFAMILY SSF75625 296 398 3.14E-14 T 12-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH01803 1d90b904e3e59e6032b7c64fea942bf6 1270 Pfam PF08471 Class II vitamin B12-dependent ribonucleotide reductase 31 147 4.1E-41 T 12-10-2018 IPR013678 Ribonucleotide reductase class II vitamin B12-dependent, N-terminal domain GO:0004748|GO:0050897|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMJ96_CH01803 1d90b904e3e59e6032b7c64fea942bf6 1270 Pfam PF02867 Ribonucleotide reductase, barrel domain 809 913 3.5E-18 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMJ96_CH01803 1d90b904e3e59e6032b7c64fea942bf6 1270 PRINTS PR01183 Ribonucleotide reductase large chain signature 275 294 4.2E-5 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMJ96_CH01803 1d90b904e3e59e6032b7c64fea942bf6 1270 PRINTS PR01183 Ribonucleotide reductase large chain signature 543 565 4.2E-5 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMJ96_CH01803 1d90b904e3e59e6032b7c64fea942bf6 1270 SUPERFAMILY SSF51998 197 925 2.01E-125 T 12-10-2018 AMJ96_CH01803 1d90b904e3e59e6032b7c64fea942bf6 1270 Pfam PF02867 Ribonucleotide reductase, barrel domain 198 749 1.5E-105 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AMJ96_CH01803 1d90b904e3e59e6032b7c64fea942bf6 1270 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 126 754 6.9E-142 T 12-10-2018 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AMJ96_CH01803 1d90b904e3e59e6032b7c64fea942bf6 1270 Gene3D G3DSA:3.20.70.20 776 928 7.4E-32 T 12-10-2018 AMJ96_CH01803 1d90b904e3e59e6032b7c64fea942bf6 1270 Gene3D G3DSA:3.20.70.20 375 775 2.7E-93 T 12-10-2018 AMJ96_CH01803 1d90b904e3e59e6032b7c64fea942bf6 1270 Gene3D G3DSA:3.20.70.20 86 352 1.1E-56 T 12-10-2018 AMJ96_CH03839 886f97d9c2c9dde5b1180033accc92d4 406 SUPERFAMILY SSF53300 134 393 9.05E-18 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMJ96_CH03839 886f97d9c2c9dde5b1180033accc92d4 406 Gene3D G3DSA:3.40.50.410 163 403 1.4E-24 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMJ96_CH03839 886f97d9c2c9dde5b1180033accc92d4 406 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 19 65 2.0E-9 T 12-10-2018 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal AMJ96_CH03839 886f97d9c2c9dde5b1180033accc92d4 406 Pfam PF00092 von Willebrand factor type A domain 215 388 6.1E-9 T 12-10-2018 IPR002035 von Willebrand factor, type A AMJ96_PB00342 44b7ec337c87813fabccd85486133258 145 ProDom PD032490 PLASMID PSIB Y4IR POLYSACCHARIDE PROBABLE INHIBITION PROTEIN 15 145 1.0E-69 T 12-10-2018 AMJ96_CH03573 cf478ee95db586fbf35ccc446ee3a909 154 SUPERFAMILY SSF46785 7 138 2.97E-32 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03573 cf478ee95db586fbf35ccc446ee3a909 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 48 64 9.9E-10 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH03573 cf478ee95db586fbf35ccc446ee3a909 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 65 80 9.9E-10 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH03573 cf478ee95db586fbf35ccc446ee3a909 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 114 134 9.9E-10 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH03573 cf478ee95db586fbf35ccc446ee3a909 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 100 9.9E-10 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH03573 cf478ee95db586fbf35ccc446ee3a909 154 Gene3D G3DSA:1.10.10.10 1 142 4.3E-35 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03573 cf478ee95db586fbf35ccc446ee3a909 154 SMART SM00347 24 124 3.8E-26 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH03573 cf478ee95db586fbf35ccc446ee3a909 154 Pfam PF01047 MarR family 31 88 5.3E-16 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH04306 6ecf2e72c672816c2520116e068a8e63 512 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 265 272 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMJ96_CH04306 6ecf2e72c672816c2520116e068a8e63 512 Gene3D G3DSA:3.40.309.10 269 462 9.0E-134 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_CH04306 6ecf2e72c672816c2520116e068a8e63 512 Gene3D G3DSA:3.40.605.10 30 487 9.0E-134 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_CH04306 6ecf2e72c672816c2520116e068a8e63 512 Pfam PF00171 Aldehyde dehydrogenase family 29 490 1.7E-123 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_CH04306 6ecf2e72c672816c2520116e068a8e63 512 SUPERFAMILY SSF53720 26 499 1.83E-127 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_CH02482 f5ffe569cef6388193cf133040ff3812 268 Gene3D G3DSA:1.10.3720.10 43 267 8.3E-45 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02482 f5ffe569cef6388193cf133040ff3812 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 67 260 1.5E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02482 f5ffe569cef6388193cf133040ff3812 268 SUPERFAMILY SSF161098 48 262 1.31E-36 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02482 f5ffe569cef6388193cf133040ff3812 268 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 49 154 3.8E-15 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_CH01993 beb25e5c91fb07112a67a7216fdcd681 389 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 4 367 4.0E-64 T 12-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 AMJ96_CH01993 beb25e5c91fb07112a67a7216fdcd681 389 SUPERFAMILY SSF53756 7 314 5.49E-17 T 12-10-2018 AMJ96_CH01993 beb25e5c91fb07112a67a7216fdcd681 389 Pfam PF02684 Lipid-A-disaccharide synthetase 8 330 1.7E-76 T 12-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 AMJ96_CH02126 7c51215884c4f767499ee4e87eac1f85 345 Gene3D G3DSA:1.10.3720.10 87 342 3.5E-67 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02126 7c51215884c4f767499ee4e87eac1f85 345 SUPERFAMILY SSF161098 112 330 5.76E-59 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02126 7c51215884c4f767499ee4e87eac1f85 345 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 136 329 4.2E-16 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00487 337229bcca5bc3380c910df12c31d595 230 Gene3D G3DSA:2.60.120.10 52 229 9.4E-30 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PD00487 337229bcca5bc3380c910df12c31d595 230 Pfam PF16867 Dimethlysulfonioproprionate lyase 64 222 1.1E-27 T 12-10-2018 IPR031723 Dimethlysulfonioproprionate lyase DddL GO:0047869 KEGG: 00920+4.4.1.3|MetaCyc: PWY-6046|MetaCyc: PWY-6049 AMJ96_PC00377 fb3c4bb61a3dae609d6ad3bfe6aa12b3 341 Gene3D G3DSA:3.40.50.2300 64 318 1.9E-81 T 12-10-2018 AMJ96_PC00377 fb3c4bb61a3dae609d6ad3bfe6aa12b3 341 SUPERFAMILY SSF53822 63 338 1.99E-59 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PC00377 fb3c4bb61a3dae609d6ad3bfe6aa12b3 341 SMART SM00354 1 71 3.1E-25 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PC00377 fb3c4bb61a3dae609d6ad3bfe6aa12b3 341 Gene3D G3DSA:1.10.260.40 1 59 1.2E-21 T 12-10-2018 AMJ96_PC00377 fb3c4bb61a3dae609d6ad3bfe6aa12b3 341 Pfam PF13377 Periplasmic binding protein-like domain 169 336 3.3E-30 T 12-10-2018 AMJ96_PC00377 fb3c4bb61a3dae609d6ad3bfe6aa12b3 341 SUPERFAMILY SSF47413 1 60 3.1E-18 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PC00377 fb3c4bb61a3dae609d6ad3bfe6aa12b3 341 Gene3D G3DSA:3.40.50.2300 162 297 1.9E-81 T 12-10-2018 AMJ96_PC00377 fb3c4bb61a3dae609d6ad3bfe6aa12b3 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 48 1.1E-18 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00619 41125fe4df17ed210cf42120396c21b9 254 SUPERFAMILY SSF48008 115 252 5.49E-25 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00619 41125fe4df17ed210cf42120396c21b9 254 Gene3D G3DSA:1.10.10.10 31 98 3.8E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00619 41125fe4df17ed210cf42120396c21b9 254 SUPERFAMILY SSF46785 30 100 6.95E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00619 41125fe4df17ed210cf42120396c21b9 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 70 86 2.7E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00619 41125fe4df17ed210cf42120396c21b9 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 70 2.7E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00619 41125fe4df17ed210cf42120396c21b9 254 Pfam PF07729 FCD domain 120 243 4.6E-24 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00619 41125fe4df17ed210cf42120396c21b9 254 SMART SM00895 118 245 4.5E-20 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00619 41125fe4df17ed210cf42120396c21b9 254 Gene3D G3DSA:1.20.120.530 112 254 5.9E-28 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00619 41125fe4df17ed210cf42120396c21b9 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 34 95 7.4E-18 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00619 41125fe4df17ed210cf42120396c21b9 254 SMART SM00345 37 96 3.8E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00433 1e9250e40400e56c38d0913c2f24da3b 542 Gene3D G3DSA:1.10.560.10 8 522 2.8E-242 T 12-10-2018 IPR027413 GroEL-like equatorial domain superfamily AMJ96_PD00433 1e9250e40400e56c38d0913c2f24da3b 542 SUPERFAMILY SSF52029 184 376 2.39E-87 T 12-10-2018 IPR027409 GroEL-like apical domain superfamily AMJ96_PD00433 1e9250e40400e56c38d0913c2f24da3b 542 Gene3D G3DSA:3.50.7.10 192 372 2.8E-242 T 12-10-2018 IPR027409 GroEL-like apical domain superfamily AMJ96_PD00433 1e9250e40400e56c38d0913c2f24da3b 542 PRINTS PR00298 60kDa chaperonin signature 83 110 1.5E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_PD00433 1e9250e40400e56c38d0913c2f24da3b 542 PRINTS PR00298 60kDa chaperonin signature 398 419 1.5E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_PD00433 1e9250e40400e56c38d0913c2f24da3b 542 PRINTS PR00298 60kDa chaperonin signature 27 53 1.5E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_PD00433 1e9250e40400e56c38d0913c2f24da3b 542 PRINTS PR00298 60kDa chaperonin signature 268 291 1.5E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_PD00433 1e9250e40400e56c38d0913c2f24da3b 542 PRINTS PR00298 60kDa chaperonin signature 350 375 1.5E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_PD00433 1e9250e40400e56c38d0913c2f24da3b 542 Gene3D G3DSA:3.30.260.10 136 410 2.8E-242 T 12-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily AMJ96_PD00433 1e9250e40400e56c38d0913c2f24da3b 542 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 525 2.4E-102 T 12-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 AMJ96_PD00433 1e9250e40400e56c38d0913c2f24da3b 542 SUPERFAMILY SSF54849 138 206 5.04E-23 T 12-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily AMJ96_PD00433 1e9250e40400e56c38d0913c2f24da3b 542 Hamap MF_00600 60 kDa chaperonin [groL]. 2 540 42.322 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_PD00433 1e9250e40400e56c38d0913c2f24da3b 542 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 528 1.5E-263 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_PD00433 1e9250e40400e56c38d0913c2f24da3b 542 SUPERFAMILY SSF48592 7 522 4.75E-79 T 12-10-2018 IPR027413 GroEL-like equatorial domain superfamily AMJ96_PD00433 1e9250e40400e56c38d0913c2f24da3b 542 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 12-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AMJ96_PC00348 a274ff1f178c5834618ab0fafc245f93 548 PIRSF PIRSF002741 20 527 5.3E-76 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_PC00348 a274ff1f178c5834618ab0fafc245f93 548 SUPERFAMILY SSF53850 32 528 5.43E-105 T 12-10-2018 AMJ96_PC00348 a274ff1f178c5834618ab0fafc245f93 548 Gene3D G3DSA:3.10.105.10 263 507 2.2E-181 T 12-10-2018 AMJ96_PC00348 a274ff1f178c5834618ab0fafc245f93 548 Gene3D G3DSA:3.40.190.10 36 530 2.2E-181 T 12-10-2018 AMJ96_PC00348 a274ff1f178c5834618ab0fafc245f93 548 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 69 449 7.7E-71 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_PC00348 a274ff1f178c5834618ab0fafc245f93 548 Gene3D G3DSA:3.90.76.10 56 162 2.2E-181 T 12-10-2018 AMJ96_CH01072 d72b98c8053bebf6ef0c7ee2bc0d49c7 227 SUPERFAMILY SSF52172 1 118 1.71E-33 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH01072 d72b98c8053bebf6ef0c7ee2bc0d49c7 227 SMART SM00448 1 112 4.0E-32 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01072 d72b98c8053bebf6ef0c7ee2bc0d49c7 227 Pfam PF00072 Response regulator receiver domain 3 113 3.0E-20 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01072 d72b98c8053bebf6ef0c7ee2bc0d49c7 227 Gene3D G3DSA:1.10.10.10 123 227 1.3E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01072 d72b98c8053bebf6ef0c7ee2bc0d49c7 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 6.2E-23 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH01072 d72b98c8053bebf6ef0c7ee2bc0d49c7 227 SUPERFAMILY SSF46894 123 222 3.12E-27 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH01072 d72b98c8053bebf6ef0c7ee2bc0d49c7 227 SMART SM00862 146 221 2.9E-20 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH01072 d72b98c8053bebf6ef0c7ee2bc0d49c7 227 Gene3D G3DSA:3.40.50.2300 1 120 3.2E-32 T 12-10-2018 AMJ96_PD00408 332122625dcb18c798eddefeecad9db2 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 282 4.5E-25 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00408 332122625dcb18c798eddefeecad9db2 293 Gene3D G3DSA:1.10.3720.10 86 283 1.2E-24 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00408 332122625dcb18c798eddefeecad9db2 293 SUPERFAMILY SSF161098 88 273 2.88E-31 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02423 1451bd6e96940d3a8fbc27d9cfd6e35d 120 Pfam PF03795 YCII-related domain 1 114 8.0E-21 T 12-10-2018 IPR005545 YCII-related AMJ96_CH02423 1451bd6e96940d3a8fbc27d9cfd6e35d 120 SUPERFAMILY SSF54909 1 114 8.85E-32 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH02423 1451bd6e96940d3a8fbc27d9cfd6e35d 120 Gene3D G3DSA:3.30.70.1060 1 117 2.7E-37 T 12-10-2018 AMJ96_CH00919 21849397897fc883b0721a0be65fa993 478 Pfam PF01565 FAD binding domain 48 183 8.0E-32 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMJ96_CH00919 21849397897fc883b0721a0be65fa993 478 Gene3D G3DSA:3.30.43.10 1 99 1.9E-21 T 12-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AMJ96_CH00919 21849397897fc883b0721a0be65fa993 478 SUPERFAMILY SSF56176 9 223 1.02E-66 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMJ96_CH00919 21849397897fc883b0721a0be65fa993 478 SUPERFAMILY SSF55103 227 474 9.48E-60 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AMJ96_CH00919 21849397897fc883b0721a0be65fa993 478 Gene3D G3DSA:3.30.465.10 101 222 2.7E-42 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMJ96_CH00919 21849397897fc883b0721a0be65fa993 478 Gene3D G3DSA:3.30.70.2740 347 433 4.1E-32 T 12-10-2018 AMJ96_CH00919 21849397897fc883b0721a0be65fa993 478 Gene3D G3DSA:1.10.45.10 434 474 9.4E-18 T 12-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AMJ96_CH00919 21849397897fc883b0721a0be65fa993 478 Gene3D G3DSA:3.30.70.2190 223 346 2.0E-36 T 12-10-2018 AMJ96_CH00919 21849397897fc883b0721a0be65fa993 478 Pfam PF02913 FAD linked oxidases, C-terminal domain 227 473 4.6E-56 T 12-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AMJ96_CH02859 4c16c7d384afc70ab5481c4eaf363058 326 Gene3D G3DSA:3.40.50.720 4 303 3.9E-29 T 12-10-2018 AMJ96_CH02859 4c16c7d384afc70ab5481c4eaf363058 326 Pfam PF13460 NAD(P)H-binding 9 150 5.3E-9 T 12-10-2018 IPR016040 NAD(P)-binding domain AMJ96_CH02859 4c16c7d384afc70ab5481c4eaf363058 326 SUPERFAMILY SSF51735 4 299 3.71E-32 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00961 a15fbeed0a867d5b9b674e71bdeee4fc 152 Pfam PF16998 17 kDa outer membrane surface antigen 37 150 4.7E-46 T 12-10-2018 IPR032635 Surface antigen domain AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 SMART SM00086 276 317 10.0 T 12-10-2018 IPR001610 PAC motif AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 SMART SM00086 408 450 1.2E-6 T 12-10-2018 IPR001610 PAC motif AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 SMART SM00086 143 185 8.5E-7 T 12-10-2018 IPR001610 PAC motif AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 Gene3D G3DSA:3.30.450.20 326 447 5.7E-28 T 12-10-2018 AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 Gene3D G3DSA:3.30.450.20 195 314 2.3E-20 T 12-10-2018 AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 SMART SM00388 472 542 1.8E-5 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 Gene3D G3DSA:3.30.565.10 541 700 8.1E-43 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 Gene3D G3DSA:3.30.450.20 73 182 6.0E-23 T 12-10-2018 AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 SUPERFAMILY SSF55785 192 314 3.59E-20 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 SMART SM00091 336 402 4.1E-8 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 SMART SM00091 204 270 4.1E-5 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 SMART SM00091 71 137 0.0064 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 SUPERFAMILY SSF55874 528 694 1.2E-38 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 SUPERFAMILY SSF47384 468 538 8.83E-7 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 Pfam PF08447 PAS fold 228 306 9.1E-8 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 Pfam PF08447 PAS fold 95 179 3.6E-14 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 Pfam PF08447 PAS fold 360 444 8.0E-15 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 PRINTS PR00344 Bacterial sensor protein C-terminal signature 679 692 3.8E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 PRINTS PR00344 Bacterial sensor protein C-terminal signature 625 639 3.8E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 PRINTS PR00344 Bacterial sensor protein C-terminal signature 643 653 3.8E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 PRINTS PR00344 Bacterial sensor protein C-terminal signature 654 672 3.8E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 SMART SM00387 584 695 2.3E-33 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 Pfam PF00512 His Kinase A (phospho-acceptor) domain 474 538 1.7E-6 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 SUPERFAMILY SSF55785 76 188 5.32E-25 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 SUPERFAMILY SSF55785 324 447 5.86E-27 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 Gene3D G3DSA:1.10.287.130 448 536 3.9E-17 T 12-10-2018 AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 201 324 2.5E-10 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 76 192 1.4E-14 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 332 457 3.2E-17 T 12-10-2018 IPR000014 PAS domain AMJ96_CH02671 01f8c847609ad85e21cc0ab52b08865a 702 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 585 693 3.1E-22 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH02606 e440db4dadd3fe094799ec67b996c5a3 118 SMART SM00418 8 89 2.9E-15 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH02606 e440db4dadd3fe094799ec67b996c5a3 118 Pfam PF12840 Helix-turn-helix domain 9 69 7.2E-16 T 12-10-2018 AMJ96_CH02606 e440db4dadd3fe094799ec67b996c5a3 118 SUPERFAMILY SSF46785 2 93 4.49E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02606 e440db4dadd3fe094799ec67b996c5a3 118 Gene3D G3DSA:1.10.10.10 1 93 9.9E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02606 e440db4dadd3fe094799ec67b996c5a3 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 1.8E-9 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH02606 e440db4dadd3fe094799ec67b996c5a3 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 45 60 1.8E-9 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH02606 e440db4dadd3fe094799ec67b996c5a3 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 75 1.8E-9 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH01670 b9024cf7a34b3ad099907aba03f3dd41 790 Pfam PF00773 RNB domain 293 618 1.2E-88 T 12-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 AMJ96_CH01670 b9024cf7a34b3ad099907aba03f3dd41 790 SMART SM00955 293 624 3.2E-156 T 12-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 AMJ96_CH01670 b9024cf7a34b3ad099907aba03f3dd41 790 Pfam PF00575 S1 RNA binding domain 670 739 6.3E-8 T 12-10-2018 IPR003029 S1 domain GO:0003676 AMJ96_CH01670 b9024cf7a34b3ad099907aba03f3dd41 790 ProSitePatterns PS01175 Ribonuclease II family signature. 591 615 - T 12-10-2018 IPR022966 Ribonuclease II/R, conserved site AMJ96_CH01670 b9024cf7a34b3ad099907aba03f3dd41 790 SUPERFAMILY SSF50249 263 668 2.33E-128 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH01670 b9024cf7a34b3ad099907aba03f3dd41 790 Hamap MF_01895 Ribonuclease R [rnr]. 59 753 51.807 T 12-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 AMJ96_CH01670 b9024cf7a34b3ad099907aba03f3dd41 790 SMART SM00316 670 753 4.9E-7 T 12-10-2018 IPR022967 RNA-binding domain, S1 AMJ96_CH01670 b9024cf7a34b3ad099907aba03f3dd41 790 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 157 740 9.3E-139 T 12-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 AMJ96_CH01670 b9024cf7a34b3ad099907aba03f3dd41 790 SUPERFAMILY SSF50249 670 752 1.23E-16 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH01670 b9024cf7a34b3ad099907aba03f3dd41 790 Gene3D G3DSA:2.40.50.140 673 773 7.1E-12 T 12-10-2018 AMJ96_CH01670 b9024cf7a34b3ad099907aba03f3dd41 790 TIGRFAM TIGR02063 RNase_R: ribonuclease R 40 753 5.9E-210 T 12-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 AMJ96_CH00352 c77811c303fad67d8abf5b3ec0d2c6db 429 Gene3D G3DSA:1.20.1250.20 39 221 1.1E-12 T 12-10-2018 AMJ96_CH00352 c77811c303fad67d8abf5b3ec0d2c6db 429 SUPERFAMILY SSF103473 44 416 2.88E-38 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH00352 c77811c303fad67d8abf5b3ec0d2c6db 429 Pfam PF07690 Major Facilitator Superfamily 59 381 2.0E-17 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH00352 c77811c303fad67d8abf5b3ec0d2c6db 429 Gene3D G3DSA:1.20.1250.20 231 414 7.6E-16 T 12-10-2018 AMJ96_PC00067 241f48e0c8c31c7309f97bf40185ad8f 203 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 54 82 - T 12-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMJ96_PC00067 241f48e0c8c31c7309f97bf40185ad8f 203 SUPERFAMILY SSF49482 6 203 3.27E-59 T 12-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMJ96_PC00067 241f48e0c8c31c7309f97bf40185ad8f 203 TIGRFAM TIGR02423 protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit 10 203 4.3E-72 T 12-10-2018 IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit GO:0005506|GO:0018578|GO:0019439|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|MetaCyc: PWY-6041 AMJ96_PC00067 241f48e0c8c31c7309f97bf40185ad8f 203 Pfam PF00775 Dioxygenase 34 165 4.3E-18 T 12-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMJ96_PC00067 241f48e0c8c31c7309f97bf40185ad8f 203 Gene3D G3DSA:2.60.130.10 2 203 3.6E-72 T 12-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMJ96_PA00252 2993b7d45e7983a50e5fd29623c8acec 235 SUPERFAMILY SSF161098 18 213 1.09E-31 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00252 2993b7d45e7983a50e5fd29623c8acec 235 Gene3D G3DSA:1.10.3720.10 12 228 2.0E-38 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00252 2993b7d45e7983a50e5fd29623c8acec 235 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 17 122 1.3E-12 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_PA00252 2993b7d45e7983a50e5fd29623c8acec 235 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 46 226 3.4E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02179 f495d9c4d357db39e6cbaa56e2fa8f91 142 Pfam PF16156 Domain of unknown function (DUF4864) 31 132 3.6E-34 T 12-10-2018 IPR032347 Protein of unknown function DUF4864 AMJ96_CH04135 bfccf1c316d0a5ca2edc81833e7ebf22 249 Pfam PF14025 Protein of unknown function (DUF4241) 61 231 2.4E-50 T 12-10-2018 IPR025335 Protein of unknown function DUF4241 AMJ96_CH02380 95e018036881e1375e2a656f04bde5eb 180 Gene3D G3DSA:3.10.450.50 26 158 4.3E-5 T 12-10-2018 AMJ96_CH04336 460259ae8a84ebea53eaf0f54935d90d 161 Pfam PF00210 Ferritin-like domain 8 144 4.0E-33 T 12-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AMJ96_CH04336 460259ae8a84ebea53eaf0f54935d90d 161 PIRSF PIRSF002560 1 157 1.0E-63 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMJ96_CH04336 460259ae8a84ebea53eaf0f54935d90d 161 PRINTS PR00601 Bacterioferritin signature 65 85 9.1E-59 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMJ96_CH04336 460259ae8a84ebea53eaf0f54935d90d 161 PRINTS PR00601 Bacterioferritin signature 3 22 9.1E-59 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMJ96_CH04336 460259ae8a84ebea53eaf0f54935d90d 161 PRINTS PR00601 Bacterioferritin signature 128 149 9.1E-59 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMJ96_CH04336 460259ae8a84ebea53eaf0f54935d90d 161 PRINTS PR00601 Bacterioferritin signature 107 127 9.1E-59 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMJ96_CH04336 460259ae8a84ebea53eaf0f54935d90d 161 PRINTS PR00601 Bacterioferritin signature 23 43 9.1E-59 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMJ96_CH04336 460259ae8a84ebea53eaf0f54935d90d 161 PRINTS PR00601 Bacterioferritin signature 86 106 9.1E-59 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMJ96_CH04336 460259ae8a84ebea53eaf0f54935d90d 161 PRINTS PR00601 Bacterioferritin signature 44 64 9.1E-59 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMJ96_CH04336 460259ae8a84ebea53eaf0f54935d90d 161 TIGRFAM TIGR00754 bfr: bacterioferritin 1 151 3.7E-55 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AMJ96_CH04336 460259ae8a84ebea53eaf0f54935d90d 161 SUPERFAMILY SSF47240 2 155 1.78E-50 T 12-10-2018 IPR009078 Ferritin-like superfamily AMJ96_CH04336 460259ae8a84ebea53eaf0f54935d90d 161 Gene3D G3DSA:1.20.1260.10 1 161 2.4E-66 T 12-10-2018 IPR012347 Ferritin-like AMJ96_PD00550 2dc55cd96c378782e555fbdb9bd5d7a3 654 Gene3D G3DSA:1.10.3470.10 6 321 5.2E-70 T 12-10-2018 IPR037294 ABC transporter, BtuC-like AMJ96_PD00550 2dc55cd96c378782e555fbdb9bd5d7a3 654 SUPERFAMILY SSF81345 341 653 1.83E-63 T 12-10-2018 IPR037294 ABC transporter, BtuC-like AMJ96_PD00550 2dc55cd96c378782e555fbdb9bd5d7a3 654 Pfam PF01032 FecCD transport family 350 652 6.7E-67 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 AMJ96_PD00550 2dc55cd96c378782e555fbdb9bd5d7a3 654 Pfam PF01032 FecCD transport family 41 318 3.7E-66 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 AMJ96_PD00550 2dc55cd96c378782e555fbdb9bd5d7a3 654 SUPERFAMILY SSF81345 14 320 1.44E-57 T 12-10-2018 IPR037294 ABC transporter, BtuC-like AMJ96_PD00550 2dc55cd96c378782e555fbdb9bd5d7a3 654 Gene3D G3DSA:1.10.3470.10 340 654 1.6E-70 T 12-10-2018 IPR037294 ABC transporter, BtuC-like AMJ96_PD00049 16fc501cf30284bc35c2250514c460d6 617 Pfam PF00005 ABC transporter 384 537 9.5E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00049 16fc501cf30284bc35c2250514c460d6 617 SMART SM00382 392 583 1.9E-20 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00049 16fc501cf30284bc35c2250514c460d6 617 Pfam PF00664 ABC transporter transmembrane region 45 312 3.1E-17 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_PD00049 16fc501cf30284bc35c2250514c460d6 617 SUPERFAMILY SSF90123 34 349 7.59E-40 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_PD00049 16fc501cf30284bc35c2250514c460d6 617 SUPERFAMILY SSF52540 356 607 9.24E-84 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00049 16fc501cf30284bc35c2250514c460d6 617 Gene3D G3DSA:3.40.50.300 357 610 9.2E-89 T 12-10-2018 AMJ96_PD00049 16fc501cf30284bc35c2250514c460d6 617 ProSitePatterns PS00211 ABC transporters family signature. 509 523 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00049 16fc501cf30284bc35c2250514c460d6 617 Gene3D G3DSA:1.20.1560.10 31 349 2.4E-27 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH02898 c8f3bb8d9011009853326d87a3bfc96e 195 SUPERFAMILY SSF53335 9 184 3.44E-31 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH02898 c8f3bb8d9011009853326d87a3bfc96e 195 Pfam PF08241 Methyltransferase domain 43 132 3.0E-12 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMJ96_CH02898 c8f3bb8d9011009853326d87a3bfc96e 195 Gene3D G3DSA:3.40.50.150 2 195 3.0E-67 T 12-10-2018 AMJ96_CH01930 a5e25424279ad3d3e85a512d2f3e8eb7 449 SUPERFAMILY SSF52440 1 113 2.01E-48 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMJ96_CH01930 a5e25424279ad3d3e85a512d2f3e8eb7 449 SUPERFAMILY SSF56059 83 347 8.08E-69 T 12-10-2018 AMJ96_CH01930 a5e25424279ad3d3e85a512d2f3e8eb7 449 SMART SM00878 335 440 1.4E-61 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_CH01930 a5e25424279ad3d3e85a512d2f3e8eb7 449 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 444 1.1E-212 T 12-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 AMJ96_CH01930 a5e25424279ad3d3e85a512d2f3e8eb7 449 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 321 1.7E-77 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMJ96_CH01930 a5e25424279ad3d3e85a512d2f3e8eb7 449 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMJ96_CH01930 a5e25424279ad3d3e85a512d2f3e8eb7 449 Pfam PF02785 Biotin carboxylase C-terminal domain 335 440 5.8E-38 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_CH01930 a5e25424279ad3d3e85a512d2f3e8eb7 449 SUPERFAMILY SSF51246 330 443 4.29E-42 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AMJ96_CH01930 a5e25424279ad3d3e85a512d2f3e8eb7 449 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 8.7E-45 T 12-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_CH01930 a5e25424279ad3d3e85a512d2f3e8eb7 449 Gene3D G3DSA:3.30.470.130 1 445 6.9E-185 T 12-10-2018 AMJ96_CH01930 a5e25424279ad3d3e85a512d2f3e8eb7 449 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 285 292 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AMJ96_CH02862 24055b3a98aa31d6c20e6b54ece4f782 176 SUPERFAMILY SSF51161 20 170 4.85E-47 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily AMJ96_CH02862 24055b3a98aa31d6c20e6b54ece4f782 176 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 20 47 6.7E-4 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH02862 24055b3a98aa31d6c20e6b54ece4f782 176 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 90 124 4.0E-9 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH02862 24055b3a98aa31d6c20e6b54ece4f782 176 Gene3D G3DSA:2.160.10.10 1 175 2.5E-68 T 12-10-2018 AMJ96_PB00102 3db707290eaf20b27775ad2ee1fcc268 339 TIGRFAM TIGR02551 SpaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family 157 337 2.4E-30 T 12-10-2018 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO GO:0030254 AMJ96_PB00102 3db707290eaf20b27775ad2ee1fcc268 339 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 268 337 5.5E-13 T 12-10-2018 IPR001543 Surface presentation of antigen (SpoA) AMJ96_PB00102 3db707290eaf20b27775ad2ee1fcc268 339 PRINTS PR00956 Flagellar motor switch protein FliN signature 314 329 3.4E-10 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AMJ96_PB00102 3db707290eaf20b27775ad2ee1fcc268 339 PRINTS PR00956 Flagellar motor switch protein FliN signature 301 314 3.4E-10 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AMJ96_PB00102 3db707290eaf20b27775ad2ee1fcc268 339 PRINTS PR00956 Flagellar motor switch protein FliN signature 268 284 3.4E-10 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AMJ96_PB00102 3db707290eaf20b27775ad2ee1fcc268 339 PRINTS PR00956 Flagellar motor switch protein FliN signature 285 301 3.4E-10 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AMJ96_PB00102 3db707290eaf20b27775ad2ee1fcc268 339 SUPERFAMILY SSF101801 267 337 1.27E-14 T 12-10-2018 IPR036429 SpoA-like superfamily AMJ96_PB00102 3db707290eaf20b27775ad2ee1fcc268 339 Gene3D G3DSA:2.30.330.10 254 339 1.5E-20 T 12-10-2018 IPR036429 SpoA-like superfamily AMJ96_CH00997 22614d2ff6953c2aae7430d556f29f41 970 SUPERFAMILY SSF141868 715 963 5.62E-80 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH00997 22614d2ff6953c2aae7430d556f29f41 970 Gene3D G3DSA:3.20.20.450 712 966 6.5E-91 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH00997 22614d2ff6953c2aae7430d556f29f41 970 SUPERFAMILY SSF55073 543 701 1.49E-36 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH00997 22614d2ff6953c2aae7430d556f29f41 970 SMART SM00052 710 955 1.1E-101 T 12-10-2018 IPR001633 EAL domain AMJ96_CH00997 22614d2ff6953c2aae7430d556f29f41 970 Pfam PF00990 Diguanylate cyclase, GGDEF domain 538 696 9.5E-37 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH00997 22614d2ff6953c2aae7430d556f29f41 970 SMART SM00267 527 700 9.5E-42 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH00997 22614d2ff6953c2aae7430d556f29f41 970 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 456 534 5.1E-8 T 12-10-2018 IPR000014 PAS domain AMJ96_CH00997 22614d2ff6953c2aae7430d556f29f41 970 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 536 698 2.4E-29 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH00997 22614d2ff6953c2aae7430d556f29f41 970 Gene3D G3DSA:3.30.450.20 409 476 1.5E-11 T 12-10-2018 AMJ96_CH00997 22614d2ff6953c2aae7430d556f29f41 970 Gene3D G3DSA:3.30.70.270 532 711 1.8E-44 T 12-10-2018 AMJ96_CH00997 22614d2ff6953c2aae7430d556f29f41 970 SMART SM00086 485 527 4.9E-7 T 12-10-2018 IPR001610 PAC motif AMJ96_CH00997 22614d2ff6953c2aae7430d556f29f41 970 Pfam PF07696 7TMR-DISM extracellular 2 56 181 5.9E-5 T 12-10-2018 IPR011622 7TM-DISM receptor, extracellular domain, type 2 AMJ96_CH00997 22614d2ff6953c2aae7430d556f29f41 970 Gene3D G3DSA:2.10.70.100 483 529 1.0E-10 T 12-10-2018 AMJ96_CH00997 22614d2ff6953c2aae7430d556f29f41 970 Pfam PF08447 PAS fold 443 521 9.9E-15 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 AMJ96_CH00997 22614d2ff6953c2aae7430d556f29f41 970 SUPERFAMILY SSF55785 419 528 1.2E-17 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH00997 22614d2ff6953c2aae7430d556f29f41 970 Pfam PF00563 EAL domain 717 950 3.5E-68 T 12-10-2018 IPR001633 EAL domain AMJ96_PD00032 eedd87fbe6cb98efe3fb8c249d7c10dd 298 Pfam PF00582 Universal stress protein family 231 296 1.3E-5 T 12-10-2018 IPR006016 UspA AMJ96_PD00032 eedd87fbe6cb98efe3fb8c249d7c10dd 298 Gene3D G3DSA:3.40.50.12370 39 297 9.3E-11 T 12-10-2018 AMJ96_PD00032 eedd87fbe6cb98efe3fb8c249d7c10dd 298 SUPERFAMILY SSF52402 179 296 7.2E-12 T 12-10-2018 AMJ96_CH00325 8529cd46534bdae05891cc2e1c0b1cd7 81 Pfam PF07704 Rv0623-like transcription factor 6 74 2.5E-9 T 12-10-2018 IPR011660 Antitoxin VapB-like AMJ96_CH00472 49794a5deb14012ba9b8cda32d61dccc 127 SUPERFAMILY SSF159894 13 108 1.88E-22 T 12-10-2018 AMJ96_CH00472 49794a5deb14012ba9b8cda32d61dccc 127 Pfam PF04993 TfoX N-terminal domain 16 107 6.7E-22 T 12-10-2018 IPR007076 TfoX, N-terminal AMJ96_CH00472 49794a5deb14012ba9b8cda32d61dccc 127 Gene3D G3DSA:3.30.1460.30 6 109 2.3E-25 T 12-10-2018 AMJ96_CH03715 358a7643060f3ba5b9fb3a02c8106d77 771 SMART SM00304 452 504 0.23 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH03715 358a7643060f3ba5b9fb3a02c8106d77 771 SMART SM00304 371 424 9.9E-6 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH03715 358a7643060f3ba5b9fb3a02c8106d77 771 Gene3D G3DSA:1.10.287.950 451 753 8.9E-71 T 12-10-2018 AMJ96_CH03715 358a7643060f3ba5b9fb3a02c8106d77 771 Gene3D G3DSA:1.20.1480.50 337 429 2.6E-16 T 12-10-2018 AMJ96_CH03715 358a7643060f3ba5b9fb3a02c8106d77 771 Pfam PF00672 HAMP domain 375 420 5.3E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH03715 358a7643060f3ba5b9fb3a02c8106d77 771 SUPERFAMILY SSF58104 472 753 4.32E-62 T 12-10-2018 AMJ96_CH03715 358a7643060f3ba5b9fb3a02c8106d77 771 SMART SM00283 505 752 7.6E-80 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH03715 358a7643060f3ba5b9fb3a02c8106d77 771 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 565 719 9.9E-46 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH03715 358a7643060f3ba5b9fb3a02c8106d77 771 SUPERFAMILY SSF158472 373 421 9.55E-9 T 12-10-2018 AMJ96_CH03398 7ed60cc05bc22b962895806986ca7c88 326 Gene3D G3DSA:3.40.50.720 1 319 3.6E-85 T 12-10-2018 AMJ96_CH03398 7ed60cc05bc22b962895806986ca7c88 326 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 226 1.0E-45 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_CH03398 7ed60cc05bc22b962895806986ca7c88 326 SUPERFAMILY SSF51735 1 313 1.52E-72 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00794 9428895671476cfe12a23598f4118e78 237 SUPERFAMILY SSF53448 2 227 2.71E-60 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00794 9428895671476cfe12a23598f4118e78 237 Pfam PF00483 Nucleotidyl transferase 5 226 1.1E-35 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AMJ96_CH00794 9428895671476cfe12a23598f4118e78 237 Gene3D G3DSA:3.90.550.10 1 235 8.7E-57 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH01280 7cb3bdfab2bad812e20d383678317109 104 SMART SM00883 2 94 2.8E-62 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_CH01280 7cb3bdfab2bad812e20d383678317109 104 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 12-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 AMJ96_CH01280 7cb3bdfab2bad812e20d383678317109 104 Pfam PF00166 Chaperonin 10 Kd subunit 3 94 1.9E-36 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_CH01280 7cb3bdfab2bad812e20d383678317109 104 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 27.704 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_CH01280 7cb3bdfab2bad812e20d383678317109 104 SUPERFAMILY SSF50129 1 95 2.26E-36 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_CH01280 7cb3bdfab2bad812e20d383678317109 104 PRINTS PR00297 10kDa chaperonin signature 60 72 2.1E-34 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_CH01280 7cb3bdfab2bad812e20d383678317109 104 PRINTS PR00297 10kDa chaperonin signature 81 94 2.1E-34 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_CH01280 7cb3bdfab2bad812e20d383678317109 104 PRINTS PR00297 10kDa chaperonin signature 3 18 2.1E-34 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_CH01280 7cb3bdfab2bad812e20d383678317109 104 PRINTS PR00297 10kDa chaperonin signature 25 46 2.1E-34 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AMJ96_CH01280 7cb3bdfab2bad812e20d383678317109 104 Gene3D G3DSA:2.30.33.40 1 103 6.8E-41 T 12-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 AMJ96_PB00332 4896f1003f82dff93d21b00ac6d320a2 300 SUPERFAMILY SSF48576 38 274 2.3E-17 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMJ96_PB00332 4896f1003f82dff93d21b00ac6d320a2 300 Gene3D G3DSA:1.10.600.10 3 282 6.9E-20 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMJ96_CH00853 55bb4483cc27321877cd8cd7097e3279 327 Pfam PF01687 Riboflavin kinase 188 311 1.6E-33 T 12-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 AMJ96_CH00853 55bb4483cc27321877cd8cd7097e3279 327 Pfam PF06574 FAD synthetase 16 169 4.0E-51 T 12-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AMJ96_CH00853 55bb4483cc27321877cd8cd7097e3279 327 PIRSF PIRSF004491 1 315 3.8E-91 T 12-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AMJ96_CH00853 55bb4483cc27321877cd8cd7097e3279 327 SUPERFAMILY SSF52374 20 183 3.26E-32 T 12-10-2018 AMJ96_CH00853 55bb4483cc27321877cd8cd7097e3279 327 Gene3D G3DSA:2.40.30.30 192 316 4.9E-38 T 12-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 AMJ96_CH00853 55bb4483cc27321877cd8cd7097e3279 327 Gene3D G3DSA:3.40.50.620 5 190 8.4E-57 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH00853 55bb4483cc27321877cd8cd7097e3279 327 SMART SM00904 187 312 1.4E-54 T 12-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 AMJ96_CH00853 55bb4483cc27321877cd8cd7097e3279 327 SUPERFAMILY SSF82114 177 312 3.05E-40 T 12-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 AMJ96_CH00853 55bb4483cc27321877cd8cd7097e3279 327 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 21 311 7.5E-76 T 12-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AMJ96_PA00233 e47e0e977a080b21830cef0bd7fff82d 313 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 303 1.2E-40 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_PD00418 7da1fbb84f112dc5976f95c2b45b510a 390 Gene3D G3DSA:1.50.10.10 2 390 4.7E-136 T 12-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 AMJ96_PD00418 7da1fbb84f112dc5976f95c2b45b510a 390 SUPERFAMILY SSF48208 17 390 4.54E-111 T 12-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 AMJ96_PD00418 7da1fbb84f112dc5976f95c2b45b510a 390 Pfam PF07470 Glycosyl Hydrolase Family 88 53 384 3.3E-44 T 12-10-2018 IPR010905 Glycosyl hydrolase, family 88 AMJ96_CH01256 3266b7d80d506076f4390392b728af4f 209 Pfam PF02798 Glutathione S-transferase, N-terminal domain 6 77 1.0E-8 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMJ96_CH01256 3266b7d80d506076f4390392b728af4f 209 Pfam PF00043 Glutathione S-transferase, C-terminal domain 119 194 9.0E-10 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMJ96_CH01256 3266b7d80d506076f4390392b728af4f 209 Gene3D G3DSA:3.40.30.10 2 79 1.6E-14 T 12-10-2018 AMJ96_CH01256 3266b7d80d506076f4390392b728af4f 209 Gene3D G3DSA:1.20.1050.10 85 197 2.0E-28 T 12-10-2018 AMJ96_CH01256 3266b7d80d506076f4390392b728af4f 209 SUPERFAMILY SSF52833 1 81 1.14E-15 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH01256 3266b7d80d506076f4390392b728af4f 209 SUPERFAMILY SSF47616 75 203 7.1E-26 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMJ96_PB00117 5964b846d45a73441bd16cdcdbbd1a36 249 SUPERFAMILY SSF56784 3 230 3.96E-13 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_PB00117 5964b846d45a73441bd16cdcdbbd1a36 249 Gene3D G3DSA:3.90.1070.10 104 186 4.5E-11 T 12-10-2018 AMJ96_PB00117 5964b846d45a73441bd16cdcdbbd1a36 249 Gene3D G3DSA:3.40.50.1000 6 236 4.5E-11 T 12-10-2018 IPR023214 HAD superfamily AMJ96_PB00117 5964b846d45a73441bd16cdcdbbd1a36 249 PIRSF PIRSF030802 1 249 5.5E-109 T 12-10-2018 IPR024197 Uncharacterised conserved protein UCP030802 AMJ96_PD00471 25f88b9a72db6a10893b6960cb77b42a 441 Pfam PF01266 FAD dependent oxidoreductase 19 412 2.4E-69 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_PD00471 25f88b9a72db6a10893b6960cb77b42a 441 SUPERFAMILY SSF51905 18 430 8.29E-61 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00471 25f88b9a72db6a10893b6960cb77b42a 441 Gene3D G3DSA:3.30.9.10 98 314 5.3E-64 T 12-10-2018 AMJ96_PD00471 25f88b9a72db6a10893b6960cb77b42a 441 Gene3D G3DSA:3.50.50.60 19 233 5.3E-64 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00471 25f88b9a72db6a10893b6960cb77b42a 441 Gene3D G3DSA:3.50.50.60 376 418 9.5E-22 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00471 25f88b9a72db6a10893b6960cb77b42a 441 Gene3D G3DSA:3.30.9.10 341 375 9.5E-22 T 12-10-2018 AMJ96_CH02020 ff81450b343f4ae38f1711662169e4eb 345 SMART SM00829 11 336 1.4E-4 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_CH02020 ff81450b343f4ae38f1711662169e4eb 345 SUPERFAMILY SSF50129 3 173 1.25E-45 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_CH02020 ff81450b343f4ae38f1711662169e4eb 345 Gene3D G3DSA:3.90.180.10 16 333 1.9E-92 T 12-10-2018 AMJ96_CH02020 ff81450b343f4ae38f1711662169e4eb 345 Pfam PF00107 Zinc-binding dehydrogenase 178 300 1.7E-19 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_CH02020 ff81450b343f4ae38f1711662169e4eb 345 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 136 5.4E-27 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_CH02020 ff81450b343f4ae38f1711662169e4eb 345 SUPERFAMILY SSF51735 141 300 1.12E-33 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02020 ff81450b343f4ae38f1711662169e4eb 345 Gene3D G3DSA:3.40.50.720 151 287 1.9E-92 T 12-10-2018 AMJ96_PA00052 164d80dc92c5069a4588577b19dad501 773 Pfam PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain 318 673 3.0E-101 T 12-10-2018 IPR035396 Alpha-L-rhamnosidase, six-hairpin glycosidase domain AMJ96_PA00052 164d80dc92c5069a4588577b19dad501 773 Pfam PF08531 Alpha-L-rhamnosidase N-terminal domain 52 175 2.3E-34 T 12-10-2018 IPR013737 Bacterial alpha-L-rhamnosidase N-terminal AMJ96_PA00052 164d80dc92c5069a4588577b19dad501 773 Pfam PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain 675 732 1.7E-7 T 12-10-2018 IPR035398 Alpha-L-rhamnosidase C-terminal domain AMJ96_PA00052 164d80dc92c5069a4588577b19dad501 773 Pfam PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain 216 298 1.4E-22 T 12-10-2018 IPR008902 Alpha-L-rhamnosidase, concanavalin-like domain AMJ96_PA00052 164d80dc92c5069a4588577b19dad501 773 Gene3D G3DSA:1.50.10.10 12 770 1.2E-224 T 12-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 AMJ96_PA00052 164d80dc92c5069a4588577b19dad501 773 SUPERFAMILY SSF48208 320 736 9.52E-46 T 12-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 AMJ96_CH01763 adc2d2eb56b2ddee75aeba073fb20396 259 SUPERFAMILY SSF52096 3 258 3.7E-78 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_CH01763 adc2d2eb56b2ddee75aeba073fb20396 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 257 6.3E-53 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMJ96_CH01763 adc2d2eb56b2ddee75aeba073fb20396 259 Gene3D G3DSA:3.90.226.10 2 258 7.7E-80 T 12-10-2018 AMJ96_CH01546 22a1d97ef91b6481a7cd4f7596e6d056 258 Hamap MF_00689 Aspartate/glutamate leucyltransferase [bpt]. 7 245 38.447 T 12-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 AMJ96_CH01546 22a1d97ef91b6481a7cd4f7596e6d056 258 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 18 87 9.9E-16 T 12-10-2018 IPR007471 N-end aminoacyl transferase, N-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 AMJ96_CH01546 22a1d97ef91b6481a7cd4f7596e6d056 258 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 107 239 3.1E-33 T 12-10-2018 IPR007472 N-end rule aminoacyl transferase, C-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 AMJ96_CH01546 22a1d97ef91b6481a7cd4f7596e6d056 258 SUPERFAMILY SSF55729 102 244 3.04E-21 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH01546 22a1d97ef91b6481a7cd4f7596e6d056 258 PIRSF PIRSF037208 1 257 1.6E-79 T 12-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 AMJ96_PC00370 6221bbc136e6530c86ababd933e674be 135 SUPERFAMILY SSF69118 2 132 4.97E-33 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_PC00370 6221bbc136e6530c86ababd933e674be 135 Gene3D G3DSA:1.20.1290.10 1 135 4.8E-54 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_PC00370 6221bbc136e6530c86ababd933e674be 135 Pfam PF02627 Carboxymuconolactone decarboxylase family 47 127 1.1E-18 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMJ96_PC00370 6221bbc136e6530c86ababd933e674be 135 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 63 109 4.3E-16 T 12-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMJ96_PD00096 ce11753bce673e654781729c602b9eb1 761 Gene3D G3DSA:1.20.1530.20 37 449 1.6E-94 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily AMJ96_PD00096 ce11753bce673e654781729c602b9eb1 761 SUPERFAMILY SSF52402 465 588 3.35E-5 T 12-10-2018 AMJ96_PD00096 ce11753bce673e654781729c602b9eb1 761 Pfam PF00582 Universal stress protein family 629 758 2.0E-10 T 12-10-2018 IPR006016 UspA AMJ96_PD00096 ce11753bce673e654781729c602b9eb1 761 Gene3D G3DSA:3.40.50.620 464 604 3.0E-8 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_PD00096 ce11753bce673e654781729c602b9eb1 761 SUPERFAMILY SSF52402 629 758 1.09E-11 T 12-10-2018 AMJ96_PD00096 ce11753bce673e654781729c602b9eb1 761 Gene3D G3DSA:3.40.50.620 628 758 2.7E-11 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_PD00096 ce11753bce673e654781729c602b9eb1 761 Pfam PF00999 Sodium/hydrogen exchanger family 44 439 1.6E-52 T 12-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMJ96_CH00722 64a27997fa30ad0e532647ad1dde4acc 494 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 5 491 6.0E-90 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AMJ96_CH00722 64a27997fa30ad0e532647ad1dde4acc 494 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 447 491 9.5E-9 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AMJ96_CH00722 64a27997fa30ad0e532647ad1dde4acc 494 SUPERFAMILY SSF64518 125 491 1.57E-6 T 12-10-2018 AMJ96_CH03341 87575701048acb82452959f85cc0e510 190 ProSitePatterns PS00398 Site-specific recombinases signature 2. 57 69 - T 12-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 AMJ96_CH03341 87575701048acb82452959f85cc0e510 190 Pfam PF00239 Resolvase, N terminal domain 4 138 6.2E-45 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMJ96_CH03341 87575701048acb82452959f85cc0e510 190 ProSitePatterns PS00397 Site-specific recombinases active site. 6 14 - T 12-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 AMJ96_CH03341 87575701048acb82452959f85cc0e510 190 SMART SM00857 3 138 5.5E-56 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMJ96_CH03341 87575701048acb82452959f85cc0e510 190 SUPERFAMILY SSF53041 1 138 4.58E-43 T 12-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 AMJ96_CH03341 87575701048acb82452959f85cc0e510 190 Gene3D G3DSA:3.40.50.1390 2 127 4.6E-47 T 12-10-2018 AMJ96_CH01425 dd34bb671a637dc521910d987671eb1e 294 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 289 62.456 T 12-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMJ96_CH01425 dd34bb671a637dc521910d987671eb1e 294 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 282 7.0E-93 T 12-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMJ96_CH01425 dd34bb671a637dc521910d987671eb1e 294 Gene3D G3DSA:3.20.20.70 1 294 1.3E-126 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH01425 dd34bb671a637dc521910d987671eb1e 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 8.5E-35 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH01425 dd34bb671a637dc521910d987671eb1e 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 8.5E-35 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH01425 dd34bb671a637dc521910d987671eb1e 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 8.5E-35 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH01425 dd34bb671a637dc521910d987671eb1e 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 8.5E-35 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH01425 dd34bb671a637dc521910d987671eb1e 294 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 12-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AMJ96_CH01425 dd34bb671a637dc521910d987671eb1e 294 Pfam PF00701 Dihydrodipicolinate synthetase family 2 276 5.8E-88 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH01425 dd34bb671a637dc521910d987671eb1e 294 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 164 - T 12-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 AMJ96_CH01425 dd34bb671a637dc521910d987671eb1e 294 SUPERFAMILY SSF51569 1 293 1.78E-102 T 12-10-2018 AMJ96_CH01425 dd34bb671a637dc521910d987671eb1e 294 PIRSF PIRSF001365 1 294 1.6E-93 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH01425 dd34bb671a637dc521910d987671eb1e 294 SMART SM01130 1 291 8.4E-146 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH01317 1692e47de87b5802b18a2d712ac8f370 203 Pfam PF13410 Glutathione S-transferase, C-terminal domain 123 184 6.9E-12 T 12-10-2018 AMJ96_CH01317 1692e47de87b5802b18a2d712ac8f370 203 Gene3D G3DSA:3.40.30.10 1 79 3.4E-27 T 12-10-2018 AMJ96_CH01317 1692e47de87b5802b18a2d712ac8f370 203 SUPERFAMILY SSF47616 71 194 6.0E-29 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMJ96_CH01317 1692e47de87b5802b18a2d712ac8f370 203 Pfam PF02798 Glutathione S-transferase, N-terminal domain 1 74 1.0E-18 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMJ96_CH01317 1692e47de87b5802b18a2d712ac8f370 203 Gene3D G3DSA:1.20.1050.10 83 192 1.2E-26 T 12-10-2018 AMJ96_CH01317 1692e47de87b5802b18a2d712ac8f370 203 SUPERFAMILY SSF52833 1 84 1.81E-27 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_PD00421 87bde196a111967a9d137b4e92526afd 424 Pfam PF13416 Bacterial extracellular solute-binding protein 51 364 6.4E-34 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PD00421 87bde196a111967a9d137b4e92526afd 424 Gene3D G3DSA:3.40.190.10 26 424 1.0E-127 T 12-10-2018 AMJ96_PD00421 87bde196a111967a9d137b4e92526afd 424 SUPERFAMILY SSF53850 30 423 8.51E-60 T 12-10-2018 AMJ96_CH04152 71d4c0c75deb270b74cd342ba02185f1 327 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 237 254 6.5E-36 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMJ96_CH04152 71d4c0c75deb270b74cd342ba02185f1 327 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 57 84 6.5E-36 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMJ96_CH04152 71d4c0c75deb270b74cd342ba02185f1 327 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 7 24 6.5E-36 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMJ96_CH04152 71d4c0c75deb270b74cd342ba02185f1 327 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 132 152 6.5E-36 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMJ96_CH04152 71d4c0c75deb270b74cd342ba02185f1 327 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 172 196 6.5E-36 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMJ96_CH04152 71d4c0c75deb270b74cd342ba02185f1 327 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 197 221 6.5E-36 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMJ96_CH04152 71d4c0c75deb270b74cd342ba02185f1 327 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 4 159 2.7E-37 T 12-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMJ96_CH04152 71d4c0c75deb270b74cd342ba02185f1 327 PIRSF PIRSF000114 1 327 2.3E-89 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMJ96_CH04152 71d4c0c75deb270b74cd342ba02185f1 327 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 187 208 - T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMJ96_CH04152 71d4c0c75deb270b74cd342ba02185f1 327 SUPERFAMILY SSF51735 3 179 1.25E-42 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH04152 71d4c0c75deb270b74cd342ba02185f1 327 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 3 318 33.094 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMJ96_CH04152 71d4c0c75deb270b74cd342ba02185f1 327 SUPERFAMILY SSF48179 178 327 1.09E-44 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_CH04152 71d4c0c75deb270b74cd342ba02185f1 327 Gene3D G3DSA:1.10.1040.10 188 327 1.7E-41 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMJ96_CH04152 71d4c0c75deb270b74cd342ba02185f1 327 Gene3D G3DSA:3.40.50.720 1 186 1.7E-49 T 12-10-2018 AMJ96_CH04152 71d4c0c75deb270b74cd342ba02185f1 327 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 179 316 1.0E-40 T 12-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 AMJ96_CH03901 39fc60591ba77bddc9668d0c7a8e7a56 436 Hamap MF_00455 Xylose isomerase [xylA]. 12 436 53.392 T 12-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMJ96_CH03901 39fc60591ba77bddc9668d0c7a8e7a56 436 SUPERFAMILY SSF51658 5 436 4.42E-171 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_CH03901 39fc60591ba77bddc9668d0c7a8e7a56 436 TIGRFAM TIGR02630 xylose_isom_A: xylose isomerase 5 436 4.4E-211 T 12-10-2018 IPR013452 Xylose isomerase, bacterial-type GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMJ96_CH03901 39fc60591ba77bddc9668d0c7a8e7a56 436 PRINTS PR00688 Xylose isomerase signature 270 297 7.7E-80 T 12-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMJ96_CH03901 39fc60591ba77bddc9668d0c7a8e7a56 436 PRINTS PR00688 Xylose isomerase signature 155 174 7.7E-80 T 12-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMJ96_CH03901 39fc60591ba77bddc9668d0c7a8e7a56 436 PRINTS PR00688 Xylose isomerase signature 179 200 7.7E-80 T 12-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMJ96_CH03901 39fc60591ba77bddc9668d0c7a8e7a56 436 PRINTS PR00688 Xylose isomerase signature 91 113 7.7E-80 T 12-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMJ96_CH03901 39fc60591ba77bddc9668d0c7a8e7a56 436 PRINTS PR00688 Xylose isomerase signature 332 343 7.7E-80 T 12-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMJ96_CH03901 39fc60591ba77bddc9668d0c7a8e7a56 436 PRINTS PR00688 Xylose isomerase signature 132 152 7.7E-80 T 12-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMJ96_CH03901 39fc60591ba77bddc9668d0c7a8e7a56 436 PRINTS PR00688 Xylose isomerase signature 228 252 7.7E-80 T 12-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMJ96_CH03901 39fc60591ba77bddc9668d0c7a8e7a56 436 PRINTS PR00688 Xylose isomerase signature 299 310 7.7E-80 T 12-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMJ96_CH03901 39fc60591ba77bddc9668d0c7a8e7a56 436 PRINTS PR00688 Xylose isomerase signature 206 225 7.7E-80 T 12-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AMJ96_CH03901 39fc60591ba77bddc9668d0c7a8e7a56 436 Gene3D G3DSA:3.20.20.150 4 436 8.2E-178 T 12-10-2018 AMJ96_PD00489 310ea120396113714ec59b977d0226a9 249 SUPERFAMILY SSF52402 1 242 9.77E-89 T 12-10-2018 AMJ96_PD00489 310ea120396113714ec59b977d0226a9 249 PIRSF PIRSF000090 1 249 5.4E-88 T 12-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AMJ96_PD00489 310ea120396113714ec59b977d0226a9 249 Pfam PF01012 Electron transfer flavoprotein domain 29 206 5.1E-46 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMJ96_PD00489 310ea120396113714ec59b977d0226a9 249 SMART SM00893 23 211 1.1E-70 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AMJ96_PD00489 310ea120396113714ec59b977d0226a9 249 Gene3D G3DSA:3.40.50.620 1 247 6.0E-92 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_PD00489 310ea120396113714ec59b977d0226a9 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 12-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AMJ96_CH02432 753c76984648f8ba31bc18c1ea9a0e12 133 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 28 111 4.0E-16 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMJ96_CH02432 753c76984648f8ba31bc18c1ea9a0e12 133 Gene3D G3DSA:2.170.150.70 6 113 2.1E-15 T 12-10-2018 AMJ96_CH02432 753c76984648f8ba31bc18c1ea9a0e12 133 SUPERFAMILY SSF51316 1 132 4.08E-41 T 12-10-2018 IPR011057 Mss4-like superfamily AMJ96_CH01971 ed828a879a8575ee6207775b66918a32 141 SUPERFAMILY SSF54197 4 140 2.94E-42 T 12-10-2018 IPR036265 HIT-like superfamily AMJ96_CH01971 ed828a879a8575ee6207775b66918a32 141 Gene3D G3DSA:3.30.428.10 3 140 2.1E-43 T 12-10-2018 IPR036265 HIT-like superfamily AMJ96_CH01971 ed828a879a8575ee6207775b66918a32 141 PRINTS PR00332 Histidine triad family signature 10 26 1.6E-19 T 12-10-2018 IPR001310 Histidine triad (HIT) protein AMJ96_CH01971 ed828a879a8575ee6207775b66918a32 141 PRINTS PR00332 Histidine triad family signature 31 49 1.6E-19 T 12-10-2018 IPR001310 Histidine triad (HIT) protein AMJ96_CH01971 ed828a879a8575ee6207775b66918a32 141 PRINTS PR00332 Histidine triad family signature 98 108 1.6E-19 T 12-10-2018 IPR001310 Histidine triad (HIT) protein AMJ96_CH01971 ed828a879a8575ee6207775b66918a32 141 Pfam PF01230 HIT domain 16 112 1.7E-28 T 12-10-2018 IPR001310 Histidine triad (HIT) protein AMJ96_PD00453 f7f5966038134ce25dccea2716510742 278 Pfam PF13673 Acetyltransferase (GNAT) domain 45 129 3.9E-12 T 12-10-2018 IPR000182 GNAT domain AMJ96_PD00453 f7f5966038134ce25dccea2716510742 278 SUPERFAMILY SSF55729 6 221 8.26E-32 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_PD00453 f7f5966038134ce25dccea2716510742 278 Gene3D G3DSA:3.40.630.30 1 140 3.7E-22 T 12-10-2018 AMJ96_PD00453 f7f5966038134ce25dccea2716510742 278 Gene3D G3DSA:3.40.630.90 146 231 2.2E-5 T 12-10-2018 AMJ96_PB00075 fa124716bee4a2a4ff34290e597962b7 297 Gene3D G3DSA:3.10.310.10 135 280 1.8E-69 T 12-10-2018 AMJ96_PB00075 fa124716bee4a2a4ff34290e597962b7 297 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 21 291 4.4E-59 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMJ96_PB00075 fa124716bee4a2a4ff34290e597962b7 297 SUPERFAMILY SSF54506 164 291 3.4E-34 T 12-10-2018 AMJ96_PB00075 fa124716bee4a2a4ff34290e597962b7 297 Pfam PF01678 Diaminopimelate epimerase 21 140 3.4E-18 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMJ96_PB00075 fa124716bee4a2a4ff34290e597962b7 297 Pfam PF01678 Diaminopimelate epimerase 172 284 9.5E-21 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMJ96_PB00075 fa124716bee4a2a4ff34290e597962b7 297 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 19 293 27.932 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AMJ96_PB00075 fa124716bee4a2a4ff34290e597962b7 297 SUPERFAMILY SSF54506 20 150 7.33E-32 T 12-10-2018 AMJ96_PB00075 fa124716bee4a2a4ff34290e597962b7 297 Gene3D G3DSA:3.10.310.10 21 289 1.8E-69 T 12-10-2018 AMJ96_PB00307 87ddc563533123f499fcf85c467f8ebc 99 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 67 78 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMJ96_PB00307 87ddc563533123f499fcf85c467f8ebc 99 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 44 93 9.9E-7 T 12-10-2018 AMJ96_PB00307 87ddc563533123f499fcf85c467f8ebc 99 Gene3D G3DSA:3.30.70.20 6 94 1.4E-12 T 12-10-2018 AMJ96_PB00307 87ddc563533123f499fcf85c467f8ebc 99 PIRSF PIRSF036548 4 99 1.2E-45 T 12-10-2018 IPR012206 Ferredoxin-like, FixX GO:0005506 AMJ96_PB00307 87ddc563533123f499fcf85c467f8ebc 99 SUPERFAMILY SSF54862 45 97 1.08E-11 T 12-10-2018 AMJ96_CH02741 f58bd38a281006e201e9d1a8b88bfeec 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 3.3E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH02741 f58bd38a281006e201e9d1a8b88bfeec 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 3.3E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH02741 f58bd38a281006e201e9d1a8b88bfeec 216 Gene3D G3DSA:1.10.357.10 21 210 2.7E-65 T 12-10-2018 AMJ96_CH02741 f58bd38a281006e201e9d1a8b88bfeec 216 SUPERFAMILY SSF46689 15 90 4.99E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02741 f58bd38a281006e201e9d1a8b88bfeec 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 72 9.8E-17 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00872 c5cee4ecdaa26154760e26952d009207 454 SUPERFAMILY SSF55073 26 184 9.42E-39 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH00872 c5cee4ecdaa26154760e26952d009207 454 Gene3D G3DSA:3.30.70.270 15 189 1.2E-45 T 12-10-2018 AMJ96_CH00872 c5cee4ecdaa26154760e26952d009207 454 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 17 181 4.2E-29 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH00872 c5cee4ecdaa26154760e26952d009207 454 SUPERFAMILY SSF141868 197 441 4.45E-80 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH00872 c5cee4ecdaa26154760e26952d009207 454 SMART SM00052 192 434 4.0E-87 T 12-10-2018 IPR001633 EAL domain AMJ96_CH00872 c5cee4ecdaa26154760e26952d009207 454 Pfam PF00990 Diguanylate cyclase, GGDEF domain 21 177 1.2E-34 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH00872 c5cee4ecdaa26154760e26952d009207 454 Gene3D G3DSA:3.20.20.450 193 448 3.6E-87 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH00872 c5cee4ecdaa26154760e26952d009207 454 Pfam PF00563 EAL domain 198 429 4.5E-67 T 12-10-2018 IPR001633 EAL domain AMJ96_CH00872 c5cee4ecdaa26154760e26952d009207 454 SMART SM00267 10 182 4.3E-40 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PD00308 10c373c81bebce584f5d316b94a41b93 261 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 2 230 5.0E-36 T 12-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMJ96_PD00308 10c373c81bebce584f5d316b94a41b93 261 Pfam PF02567 Phenazine biosynthesis-like protein 8 257 1.5E-56 T 12-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMJ96_PD00308 10c373c81bebce584f5d316b94a41b93 261 SUPERFAMILY SSF54506 1 259 4.01E-78 T 12-10-2018 AMJ96_PD00308 10c373c81bebce584f5d316b94a41b93 261 Gene3D G3DSA:3.10.310.10 117 249 9.5E-92 T 12-10-2018 AMJ96_PD00308 10c373c81bebce584f5d316b94a41b93 261 PIRSF PIRSF016184 1 261 1.0E-49 T 12-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMJ96_PD00308 10c373c81bebce584f5d316b94a41b93 261 Gene3D G3DSA:3.10.310.10 6 253 9.5E-92 T 12-10-2018 AMJ96_CH02278 de65f09c736ec85c6567a57cd7f18eca 164 PRINTS PR01576 Peptide deformylase signature 120 149 1.5E-22 T 12-10-2018 IPR023635 Peptide deformylase AMJ96_CH02278 de65f09c736ec85c6567a57cd7f18eca 164 PRINTS PR01576 Peptide deformylase signature 101 119 1.5E-22 T 12-10-2018 IPR023635 Peptide deformylase AMJ96_CH02278 de65f09c736ec85c6567a57cd7f18eca 164 PRINTS PR01576 Peptide deformylase signature 89 100 1.5E-22 T 12-10-2018 IPR023635 Peptide deformylase AMJ96_CH02278 de65f09c736ec85c6567a57cd7f18eca 164 PRINTS PR01576 Peptide deformylase signature 33 62 1.5E-22 T 12-10-2018 IPR023635 Peptide deformylase AMJ96_CH02278 de65f09c736ec85c6567a57cd7f18eca 164 PIRSF PIRSF004749 1 164 1.1E-45 T 12-10-2018 IPR023635 Peptide deformylase AMJ96_CH02278 de65f09c736ec85c6567a57cd7f18eca 164 Hamap MF_00163 Peptide deformylase [def]. 2 162 24.03 T 12-10-2018 IPR023635 Peptide deformylase AMJ96_CH02278 de65f09c736ec85c6567a57cd7f18eca 164 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 160 1.3E-36 T 12-10-2018 IPR023635 Peptide deformylase AMJ96_CH02278 de65f09c736ec85c6567a57cd7f18eca 164 Pfam PF01327 Polypeptide deformylase 4 152 8.4E-38 T 12-10-2018 IPR023635 Peptide deformylase AMJ96_CH02278 de65f09c736ec85c6567a57cd7f18eca 164 SUPERFAMILY SSF56420 2 162 1.57E-48 T 12-10-2018 IPR036821 Peptide deformylase superfamily AMJ96_CH02278 de65f09c736ec85c6567a57cd7f18eca 164 Gene3D G3DSA:3.90.45.10 1 164 3.3E-46 T 12-10-2018 IPR036821 Peptide deformylase superfamily AMJ96_CH02189 9c4421ec09be1752d683b25f8abd5ce3 700 Gene3D G3DSA:3.30.450.20 351 476 5.0E-8 T 12-10-2018 AMJ96_CH02189 9c4421ec09be1752d683b25f8abd5ce3 700 PRINTS PR00344 Bacterial sensor protein C-terminal signature 646 656 2.6E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02189 9c4421ec09be1752d683b25f8abd5ce3 700 PRINTS PR00344 Bacterial sensor protein C-terminal signature 659 677 2.6E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02189 9c4421ec09be1752d683b25f8abd5ce3 700 PRINTS PR00344 Bacterial sensor protein C-terminal signature 628 642 2.6E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02189 9c4421ec09be1752d683b25f8abd5ce3 700 PRINTS PR00344 Bacterial sensor protein C-terminal signature 683 696 2.6E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02189 9c4421ec09be1752d683b25f8abd5ce3 700 Gene3D G3DSA:3.30.565.10 552 699 5.0E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02189 9c4421ec09be1752d683b25f8abd5ce3 700 SMART SM00387 591 699 3.7E-24 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH02189 9c4421ec09be1752d683b25f8abd5ce3 700 SUPERFAMILY SSF55785 354 467 7.75E-7 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH02189 9c4421ec09be1752d683b25f8abd5ce3 700 SUPERFAMILY SSF47384 480 544 8.24E-5 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH02189 9c4421ec09be1752d683b25f8abd5ce3 700 Gene3D G3DSA:1.10.287.130 477 548 1.5E-7 T 12-10-2018 AMJ96_CH02189 9c4421ec09be1752d683b25f8abd5ce3 700 SUPERFAMILY SSF55874 548 696 1.83E-35 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02189 9c4421ec09be1752d683b25f8abd5ce3 700 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 594 697 1.2E-17 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH01817 944036656c4b350c4845a880bef735e1 322 Gene3D G3DSA:3.40.190.290 97 280 1.3E-25 T 12-10-2018 AMJ96_CH01817 944036656c4b350c4845a880bef735e1 322 SUPERFAMILY SSF53850 93 299 6.21E-29 T 12-10-2018 AMJ96_CH01817 944036656c4b350c4845a880bef735e1 322 SUPERFAMILY SSF46785 6 92 1.25E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01817 944036656c4b350c4845a880bef735e1 322 Pfam PF03466 LysR substrate binding domain 92 296 2.1E-27 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH01817 944036656c4b350c4845a880bef735e1 322 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 67 2.0E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01817 944036656c4b350c4845a880bef735e1 322 Gene3D G3DSA:1.10.10.10 5 90 7.8E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01817 944036656c4b350c4845a880bef735e1 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 7.7E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01817 944036656c4b350c4845a880bef735e1 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 7.7E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01817 944036656c4b350c4845a880bef735e1 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 7.7E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00322 c8ce3fd691fc638555346a357f476491 405 SUPERFAMILY SSF51604 121 366 1.09E-70 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_PD00322 c8ce3fd691fc638555346a357f476491 405 Gene3D G3DSA:3.30.390.10 2 127 1.9E-31 T 12-10-2018 IPR029017 Enolase-like, N-terminal AMJ96_PD00322 c8ce3fd691fc638555346a357f476491 405 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 36 133 1.6E-21 T 12-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMJ96_PD00322 c8ce3fd691fc638555346a357f476491 405 SMART SM00922 149 240 5.6E-15 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMJ96_PD00322 c8ce3fd691fc638555346a357f476491 405 Pfam PF13378 Enolase C-terminal domain-like 154 360 1.4E-58 T 12-10-2018 IPR029065 Enolase C-terminal domain-like AMJ96_PD00322 c8ce3fd691fc638555346a357f476491 405 SUPERFAMILY SSF54826 1 138 4.53E-29 T 12-10-2018 AMJ96_PD00322 c8ce3fd691fc638555346a357f476491 405 Gene3D G3DSA:3.20.20.120 128 365 5.2E-76 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_CH01972 d94088daff3c9d32f12b9562c3914a65 396 SUPERFAMILY SSF55729 191 356 6.36E-36 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH01972 d94088daff3c9d32f12b9562c3914a65 396 Gene3D G3DSA:3.40.630.30 190 339 1.6E-5 T 12-10-2018 AMJ96_CH01972 d94088daff3c9d32f12b9562c3914a65 396 Pfam PF04339 Peptidogalycan biosysnthesis/recognition 13 389 1.2E-155 T 12-10-2018 IPR007434 Peptidogalycan biosysnthesis/recognition AMJ96_CH02327 157b851e6913c654074b02bb494ba6bd 140 PRINTS PR00502 NUDIX hydrolase family signature 51 66 5.0E-5 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMJ96_CH02327 157b851e6913c654074b02bb494ba6bd 140 PRINTS PR00502 NUDIX hydrolase family signature 37 51 5.0E-5 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMJ96_CH02327 157b851e6913c654074b02bb494ba6bd 140 Gene3D G3DSA:3.90.79.10 8 137 2.8E-36 T 12-10-2018 AMJ96_CH02327 157b851e6913c654074b02bb494ba6bd 140 Pfam PF00293 NUDIX domain 11 130 1.2E-21 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMJ96_CH02327 157b851e6913c654074b02bb494ba6bd 140 SUPERFAMILY SSF55811 9 134 8.67E-32 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_CH02327 157b851e6913c654074b02bb494ba6bd 140 ProSitePatterns PS00893 Nudix box signature. 42 63 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMJ96_PA00167 3610e1092148ff57bfd34429bc11e030 112 SUPERFAMILY SSF109635 4 73 5.89E-5 T 12-10-2018 IPR037187 DksA, N-terminal domain superfamily AMJ96_PA00167 3610e1092148ff57bfd34429bc11e030 112 Gene3D G3DSA:1.20.120.910 1 105 4.5E-27 T 12-10-2018 AMJ96_PA00167 3610e1092148ff57bfd34429bc11e030 112 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 73 105 9.0E-9 T 12-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 AMJ96_PA00167 3610e1092148ff57bfd34429bc11e030 112 SUPERFAMILY SSF57716 75 107 4.28E-7 T 12-10-2018 AMJ96_CH00531 4c581b4d44edb8be975de9984ddfb77f 177 Gene3D G3DSA:1.10.10.60 2 46 9.3E-8 T 12-10-2018 AMJ96_CH00531 4c581b4d44edb8be975de9984ddfb77f 177 Pfam PF07750 GcrA cell cycle regulator 1 172 3.0E-64 T 12-10-2018 IPR011681 GcrA cell cycle regulator AMJ96_CH00328 7cc1508be004ebd64fdf292d7f25f932 95 Pfam PF07045 Domain of unknown function (DUF1330) 3 95 1.4E-37 T 12-10-2018 IPR010753 Domain of unknown function DUF1330 AMJ96_CH00328 7cc1508be004ebd64fdf292d7f25f932 95 Gene3D G3DSA:3.30.70.100 1 95 1.4E-39 T 12-10-2018 AMJ96_CH00328 7cc1508be004ebd64fdf292d7f25f932 95 SUPERFAMILY SSF54909 1 95 1.31E-33 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH02536 74d97c0d614f10352c887cc6e1a23806 263 Pfam PF12833 Helix-turn-helix domain 178 251 2.1E-12 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH02536 74d97c0d614f10352c887cc6e1a23806 263 SMART SM00342 169 253 0.0017 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH02536 74d97c0d614f10352c887cc6e1a23806 263 Gene3D G3DSA:1.10.10.60 159 260 2.3E-12 T 12-10-2018 AMJ96_CH01239 4578cce8f57a2e1904192237c6f77111 227 Pfam PF13417 Glutathione S-transferase, N-terminal domain 14 76 9.3E-9 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMJ96_CH01239 4578cce8f57a2e1904192237c6f77111 227 Gene3D G3DSA:1.20.1050.10 84 187 3.5E-58 T 12-10-2018 AMJ96_CH01239 4578cce8f57a2e1904192237c6f77111 227 SUPERFAMILY SSF47616 85 206 9.05E-23 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMJ96_CH01239 4578cce8f57a2e1904192237c6f77111 227 SUPERFAMILY SSF52833 1 79 5.49E-16 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH01239 4578cce8f57a2e1904192237c6f77111 227 Gene3D G3DSA:3.40.30.10 2 195 3.5E-58 T 12-10-2018 AMJ96_CH01239 4578cce8f57a2e1904192237c6f77111 227 Pfam PF00043 Glutathione S-transferase, C-terminal domain 105 188 8.7E-10 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMJ96_CH02992 d5bda16a21db2cf0edc7e09a26f6f276 102 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 8 95 8.6E-13 T 12-10-2018 IPR008407 Branched-chain amino acid transport, AzlD AMJ96_CH00567 2f0493b87110bd1942ab98b96c530e51 193 SUPERFAMILY SSF53955 13 174 1.47E-22 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily AMJ96_CH00567 2f0493b87110bd1942ab98b96c530e51 193 Pfam PF01464 Transglycosylase SLT domain 47 158 2.3E-5 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 AMJ96_CH00567 2f0493b87110bd1942ab98b96c530e51 193 Gene3D G3DSA:1.10.530.10 36 189 5.2E-18 T 12-10-2018 AMJ96_CH04030 b9e08aeeff3d6b8e1071782d4f4f677a 277 SUPERFAMILY SSF51735 4 210 9.94E-56 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH04030 b9e08aeeff3d6b8e1071782d4f4f677a 277 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH04030 b9e08aeeff3d6b8e1071782d4f4f677a 277 Pfam PF00106 short chain dehydrogenase 6 190 1.8E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04030 b9e08aeeff3d6b8e1071782d4f4f677a 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 1.6E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04030 b9e08aeeff3d6b8e1071782d4f4f677a 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 1.6E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04030 b9e08aeeff3d6b8e1071782d4f4f677a 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 1.6E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04030 b9e08aeeff3d6b8e1071782d4f4f677a 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 1.6E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04030 b9e08aeeff3d6b8e1071782d4f4f677a 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.6E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04030 b9e08aeeff3d6b8e1071782d4f4f677a 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 1.6E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04030 b9e08aeeff3d6b8e1071782d4f4f677a 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 1.6E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04030 b9e08aeeff3d6b8e1071782d4f4f677a 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 1.6E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04030 b9e08aeeff3d6b8e1071782d4f4f677a 277 Gene3D G3DSA:3.40.50.720 4 263 6.8E-59 T 12-10-2018 AMJ96_CH01426 04d3c0e80c16b3dea521f12cb2bd14db 159 SUPERFAMILY SSF74982 11 138 2.62E-50 T 12-10-2018 IPR023620 Small protein B AMJ96_CH01426 04d3c0e80c16b3dea521f12cb2bd14db 159 Pfam PF01668 SmpB protein 14 156 8.7E-60 T 12-10-2018 IPR000037 SsrA-binding protein GO:0003723 AMJ96_CH01426 04d3c0e80c16b3dea521f12cb2bd14db 159 Gene3D G3DSA:2.40.280.10 7 135 2.8E-48 T 12-10-2018 IPR023620 Small protein B AMJ96_CH01426 04d3c0e80c16b3dea521f12cb2bd14db 159 TIGRFAM TIGR00086 smpB: SsrA-binding protein 14 156 2.4E-57 T 12-10-2018 IPR000037 SsrA-binding protein GO:0003723 AMJ96_CH01426 04d3c0e80c16b3dea521f12cb2bd14db 159 Hamap MF_00023 SsrA-binding protein [smpB]. 1 159 73.833 T 12-10-2018 IPR000037 SsrA-binding protein GO:0003723 AMJ96_CH01426 04d3c0e80c16b3dea521f12cb2bd14db 159 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 14 138 1.0E-59 T 12-10-2018 IPR000037 SsrA-binding protein GO:0003723 AMJ96_CH01426 04d3c0e80c16b3dea521f12cb2bd14db 159 ProSitePatterns PS01317 SsrA-binding protein. 32 44 - T 12-10-2018 IPR020081 SsrA-binding protein, conserved site AMJ96_CH03550 f0bf6c924eee2c32566ef7063092eab1 120 Pfam PF00072 Response regulator receiver domain 5 111 5.6E-13 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03550 f0bf6c924eee2c32566ef7063092eab1 120 SUPERFAMILY SSF52172 2 113 2.28E-17 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH03550 f0bf6c924eee2c32566ef7063092eab1 120 Gene3D G3DSA:3.40.50.2300 1 118 6.5E-17 T 12-10-2018 AMJ96_CH03550 f0bf6c924eee2c32566ef7063092eab1 120 SMART SM00448 2 113 2.5E-7 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00944 724d2df647b1b56d4efa554906d22351 449 Pfam PF07158 Dicarboxylate carrier protein MatC N-terminus 1 149 5.7E-67 T 12-10-2018 IPR009827 Dicarboxylate carrier MatC N-terminal AMJ96_CH00944 724d2df647b1b56d4efa554906d22351 449 Pfam PF03600 Citrate transporter 274 441 7.8E-11 T 12-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 AMJ96_PA00135 84c587be99d9ebe2fb77f063f7c76052 147 TIGRFAM TIGR02375 pseudoazurin: pseudoazurin 30 143 1.6E-49 T 12-10-2018 IPR012745 Pseudoazurin GO:0005507 AMJ96_PA00135 84c587be99d9ebe2fb77f063f7c76052 147 PRINTS PR00155 Amicyanin family signature 82 97 1.5E-40 T 12-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AMJ96_PA00135 84c587be99d9ebe2fb77f063f7c76052 147 PRINTS PR00155 Amicyanin family signature 61 76 1.5E-40 T 12-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AMJ96_PA00135 84c587be99d9ebe2fb77f063f7c76052 147 PRINTS PR00155 Amicyanin family signature 98 113 1.5E-40 T 12-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AMJ96_PA00135 84c587be99d9ebe2fb77f063f7c76052 147 PRINTS PR00155 Amicyanin family signature 41 60 1.5E-40 T 12-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AMJ96_PA00135 84c587be99d9ebe2fb77f063f7c76052 147 PRINTS PR00155 Amicyanin family signature 25 40 1.5E-40 T 12-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AMJ96_PA00135 84c587be99d9ebe2fb77f063f7c76052 147 Gene3D G3DSA:2.60.40.420 24 145 6.4E-38 T 12-10-2018 IPR008972 Cupredoxin AMJ96_PA00135 84c587be99d9ebe2fb77f063f7c76052 147 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 29 115 1.6E-18 T 12-10-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 AMJ96_PA00135 84c587be99d9ebe2fb77f063f7c76052 147 ProSitePatterns PS00196 Type-1 copper (blue) proteins signature. 95 109 - T 12-10-2018 IPR028871 Blue (type 1) copper protein, binding site AMJ96_PA00135 84c587be99d9ebe2fb77f063f7c76052 147 SUPERFAMILY SSF49503 25 139 5.45E-33 T 12-10-2018 IPR008972 Cupredoxin AMJ96_PA00135 84c587be99d9ebe2fb77f063f7c76052 147 PRINTS PR00156 Type I copper blue protein family signature 61 76 8.2E-16 T 12-10-2018 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 AMJ96_PA00135 84c587be99d9ebe2fb77f063f7c76052 147 PRINTS PR00156 Type I copper blue protein family signature 47 60 8.2E-16 T 12-10-2018 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 AMJ96_PA00135 84c587be99d9ebe2fb77f063f7c76052 147 PRINTS PR00156 Type I copper blue protein family signature 93 107 8.2E-16 T 12-10-2018 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 AMJ96_CH04211 86886c9c1cc5871d2552164b23c206e5 272 SUPERFAMILY SSF161098 45 252 2.88E-40 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH04211 86886c9c1cc5871d2552164b23c206e5 272 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 43 110 5.7E-13 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_CH04211 86886c9c1cc5871d2552164b23c206e5 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 65 267 1.8E-20 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH04211 86886c9c1cc5871d2552164b23c206e5 272 Gene3D G3DSA:1.10.3720.10 33 269 7.5E-51 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01477 df33b9ddc82d71fd3e85c4a91f0a8969 249 Gene3D G3DSA:3.20.20.80 29 242 4.5E-63 T 12-10-2018 AMJ96_CH01477 df33b9ddc82d71fd3e85c4a91f0a8969 249 Pfam PF01183 Glycosyl hydrolases family 25 45 223 1.5E-40 T 12-10-2018 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 AMJ96_CH01477 df33b9ddc82d71fd3e85c4a91f0a8969 249 SMART SM00641 42 149 6.8E-12 T 12-10-2018 IPR018077 Glycoside hydrolase, family 25 subgroup AMJ96_CH01477 df33b9ddc82d71fd3e85c4a91f0a8969 249 SUPERFAMILY SSF51445 39 240 9.83E-56 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH01965 8739bdbc0ec66b89071a793847196fb0 261 Pfam PF00561 alpha/beta hydrolase fold 30 133 1.2E-24 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH01965 8739bdbc0ec66b89071a793847196fb0 261 SUPERFAMILY SSF53474 8 241 1.36E-46 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01965 8739bdbc0ec66b89071a793847196fb0 261 Gene3D G3DSA:3.40.50.1820 9 248 6.1E-45 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01965 8739bdbc0ec66b89071a793847196fb0 261 PRINTS PR00111 Alpha/beta hydrolase fold signature 104 117 2.3E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH01965 8739bdbc0ec66b89071a793847196fb0 261 PRINTS PR00111 Alpha/beta hydrolase fold signature 118 131 2.3E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH01965 8739bdbc0ec66b89071a793847196fb0 261 PRINTS PR00111 Alpha/beta hydrolase fold signature 58 73 2.3E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH01338 7c9f13a0e2645d48a2245a654f090261 882 SUPERFAMILY SSF55486 210 457 1.17E-74 T 12-10-2018 AMJ96_CH01338 7c9f13a0e2645d48a2245a654f090261 882 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 451 554 9.5E-27 T 12-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold AMJ96_CH01338 7c9f13a0e2645d48a2245a654f090261 882 Pfam PF01433 Peptidase family M1 domain 215 443 6.5E-58 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMJ96_CH01338 7c9f13a0e2645d48a2245a654f090261 882 Gene3D G3DSA:2.60.40.1730 16 201 7.6E-65 T 12-10-2018 AMJ96_CH01338 7c9f13a0e2645d48a2245a654f090261 882 Gene3D G3DSA:1.25.50.10 556 881 8.3E-99 T 12-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily AMJ96_CH01338 7c9f13a0e2645d48a2245a654f090261 882 Gene3D G3DSA:1.10.390.10 287 450 1.8E-63 T 12-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily AMJ96_CH01338 7c9f13a0e2645d48a2245a654f090261 882 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 13 880 0.0 T 12-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 AMJ96_CH01338 7c9f13a0e2645d48a2245a654f090261 882 Gene3D G3DSA:1.10.1740.60 202 286 4.8E-41 T 12-10-2018 AMJ96_CH01338 7c9f13a0e2645d48a2245a654f090261 882 SUPERFAMILY SSF63737 6 200 9.29E-43 T 12-10-2018 AMJ96_CH01338 7c9f13a0e2645d48a2245a654f090261 882 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 265 275 7.4E-8 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMJ96_CH01338 7c9f13a0e2645d48a2245a654f090261 882 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 301 316 7.4E-8 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMJ96_CH01338 7c9f13a0e2645d48a2245a654f090261 882 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 320 332 7.4E-8 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMJ96_CH01338 7c9f13a0e2645d48a2245a654f090261 882 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 183 198 7.4E-8 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AMJ96_CH01338 7c9f13a0e2645d48a2245a654f090261 882 Gene3D G3DSA:2.60.40.1840 451 554 1.7E-26 T 12-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily AMJ96_CH01338 7c9f13a0e2645d48a2245a654f090261 882 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 558 881 5.8E-102 T 12-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal AMJ96_PA00110 e145d685d3d61693ca4a1fc4034be7fb 348 Gene3D G3DSA:3.40.50.300 4 221 5.7E-64 T 12-10-2018 AMJ96_PA00110 e145d685d3d61693ca4a1fc4034be7fb 348 Gene3D G3DSA:2.40.50.940 222 340 8.3E-22 T 12-10-2018 AMJ96_PA00110 e145d685d3d61693ca4a1fc4034be7fb 348 SMART SM00382 28 211 1.5E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00110 e145d685d3d61693ca4a1fc4034be7fb 348 Gene3D G3DSA:2.40.50.140 272 331 8.3E-22 T 12-10-2018 AMJ96_PA00110 e145d685d3d61693ca4a1fc4034be7fb 348 SUPERFAMILY SSF52540 4 243 5.05E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00110 e145d685d3d61693ca4a1fc4034be7fb 348 Pfam PF08402 TOBE domain 265 337 3.0E-6 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_PA00110 e145d685d3d61693ca4a1fc4034be7fb 348 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PA00110 e145d685d3d61693ca4a1fc4034be7fb 348 SUPERFAMILY SSF50331 236 346 9.86E-19 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_PA00110 e145d685d3d61693ca4a1fc4034be7fb 348 Pfam PF00005 ABC transporter 20 161 1.7E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02764 719c677569fbec0a2e5d027e04eafd6c 258 Gene3D G3DSA:2.60.130.10 33 238 2.7E-41 T 12-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMJ96_CH02764 719c677569fbec0a2e5d027e04eafd6c 258 Pfam PF00775 Dioxygenase 85 208 1.7E-10 T 12-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMJ96_CH02764 719c677569fbec0a2e5d027e04eafd6c 258 SUPERFAMILY SSF49482 57 233 4.06E-44 T 12-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMJ96_CH01322 fd4dc75f488c148d772549e022425946 214 Pfam PF00182 Chitinase class I 102 141 1.9E-4 T 12-10-2018 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 AMJ96_CH01322 fd4dc75f488c148d772549e022425946 214 Gene3D G3DSA:3.30.20.10 93 142 3.4E-10 T 12-10-2018 AMJ96_CH01322 fd4dc75f488c148d772549e022425946 214 SUPERFAMILY SSF53955 33 200 6.47E-21 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily AMJ96_CH02578 b78d321d297da58297da05a1b0827929 718 SUPERFAMILY SSF50182 526 588 3.24E-11 T 12-10-2018 IPR010920 LSM domain superfamily AMJ96_CH02578 b78d321d297da58297da05a1b0827929 718 Pfam PF00924 Mechanosensitive ion channel 483 682 2.6E-44 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AMJ96_CH02578 b78d321d297da58297da05a1b0827929 718 SUPERFAMILY SSF82861 469 524 7.32E-13 T 12-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AMJ96_CH02578 b78d321d297da58297da05a1b0827929 718 Gene3D G3DSA:2.30.30.60 541 590 4.3E-12 T 12-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily AMJ96_CH02578 b78d321d297da58297da05a1b0827929 718 Gene3D G3DSA:3.30.70.100 595 681 1.1E-20 T 12-10-2018 AMJ96_CH02578 b78d321d297da58297da05a1b0827929 718 SUPERFAMILY SSF82689 589 690 1.57E-16 T 12-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AMJ96_CH03272 947f5d65f33125a4df0dd6ca46ed09e1 155 SUPERFAMILY SSF55961 4 154 1.4E-45 T 12-10-2018 AMJ96_CH03272 947f5d65f33125a4df0dd6ca46ed09e1 155 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 16 152 2.8E-33 T 12-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like AMJ96_CH03272 947f5d65f33125a4df0dd6ca46ed09e1 155 Gene3D G3DSA:3.30.530.20 1 154 8.6E-46 T 12-10-2018 IPR023393 START-like domain superfamily AMJ96_CH02316 983c546d3146dec131a14e45a4944f6a 225 Gene3D G3DSA:3.40.50.1820 2 225 1.9E-68 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02316 983c546d3146dec131a14e45a4944f6a 225 SUPERFAMILY SSF53474 4 213 5.54E-51 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02316 983c546d3146dec131a14e45a4944f6a 225 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 17 134 2.1E-8 T 12-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 AMJ96_CH01261 22cb6496190a4bbd99e3921b1894a809 301 ProSitePatterns PS00146 Beta-lactamase class-A active site. 78 93 - T 12-10-2018 IPR023650 Beta-lactamase, class-A active site KEGG: 00311+3.5.2.6 AMJ96_CH01261 22cb6496190a4bbd99e3921b1894a809 301 SUPERFAMILY SSF56601 42 298 1.36E-71 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMJ96_CH01261 22cb6496190a4bbd99e3921b1894a809 301 Pfam PF13354 Beta-lactamase enzyme family 67 274 1.1E-42 T 12-10-2018 AMJ96_CH01261 22cb6496190a4bbd99e3921b1894a809 301 PRINTS PR00118 Beta-lactamase class A signature 217 232 5.8E-53 T 12-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMJ96_CH01261 22cb6496190a4bbd99e3921b1894a809 301 PRINTS PR00118 Beta-lactamase class A signature 234 249 5.8E-53 T 12-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMJ96_CH01261 22cb6496190a4bbd99e3921b1894a809 301 PRINTS PR00118 Beta-lactamase class A signature 45 69 5.8E-53 T 12-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMJ96_CH01261 22cb6496190a4bbd99e3921b1894a809 301 PRINTS PR00118 Beta-lactamase class A signature 76 93 5.8E-53 T 12-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMJ96_CH01261 22cb6496190a4bbd99e3921b1894a809 301 PRINTS PR00118 Beta-lactamase class A signature 155 179 5.8E-53 T 12-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMJ96_CH01261 22cb6496190a4bbd99e3921b1894a809 301 PRINTS PR00118 Beta-lactamase class A signature 119 144 5.8E-53 T 12-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMJ96_CH01261 22cb6496190a4bbd99e3921b1894a809 301 PRINTS PR00118 Beta-lactamase class A signature 181 206 5.8E-53 T 12-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 AMJ96_CH01261 22cb6496190a4bbd99e3921b1894a809 301 Gene3D G3DSA:3.40.710.10 38 301 2.5E-76 T 12-10-2018 AMJ96_CH01252 4b3637124f25504ac8662b401386fc08 222 SUPERFAMILY SSF52833 5 218 9.61E-21 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH01252 4b3637124f25504ac8662b401386fc08 222 Gene3D G3DSA:3.40.30.10 1 220 1.9E-40 T 12-10-2018 AMJ96_PD00078 8964bf60d6158c145d30d1c82d0a458f 132 Gene3D G3DSA:2.60.40.2420 37 130 1.7E-24 T 12-10-2018 AMJ96_PD00346 0dbb86d7378a36b0b5ffda369a876fc0 513 SUPERFAMILY SSF52540 277 508 1.39E-74 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00346 0dbb86d7378a36b0b5ffda369a876fc0 513 Gene3D G3DSA:3.40.50.300 275 513 7.0E-78 T 12-10-2018 AMJ96_PD00346 0dbb86d7378a36b0b5ffda369a876fc0 513 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 25 122 8.9E-19 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_PD00346 0dbb86d7378a36b0b5ffda369a876fc0 513 SUPERFAMILY SSF161098 24 217 4.84E-37 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00346 0dbb86d7378a36b0b5ffda369a876fc0 513 SMART SM00382 301 486 9.8E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00346 0dbb86d7378a36b0b5ffda369a876fc0 513 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 43 231 1.1E-21 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00346 0dbb86d7378a36b0b5ffda369a876fc0 513 ProSitePatterns PS00211 ABC transporters family signature. 410 424 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00346 0dbb86d7378a36b0b5ffda369a876fc0 513 Pfam PF00005 ABC transporter 292 438 2.5E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00346 0dbb86d7378a36b0b5ffda369a876fc0 513 Gene3D G3DSA:1.10.3720.10 11 233 3.4E-45 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03832 5ed7c368784d0d3141eed194bba2dc47 361 SUPERFAMILY SSF53850 42 356 6.92E-39 T 12-10-2018 AMJ96_CH03832 5ed7c368784d0d3141eed194bba2dc47 361 Pfam PF13416 Bacterial extracellular solute-binding protein 59 315 1.1E-11 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH03832 5ed7c368784d0d3141eed194bba2dc47 361 Gene3D G3DSA:3.40.190.10 42 342 3.2E-128 T 12-10-2018 AMJ96_CH03832 5ed7c368784d0d3141eed194bba2dc47 361 Gene3D G3DSA:3.40.190.10 140 355 3.2E-128 T 12-10-2018 AMJ96_PC00289 10e0de419c68afa90ba75c7881039abe 233 Gene3D G3DSA:3.40.50.300 2 232 1.3E-56 T 12-10-2018 AMJ96_PC00289 10e0de419c68afa90ba75c7881039abe 233 Pfam PF00005 ABC transporter 20 161 6.3E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00289 10e0de419c68afa90ba75c7881039abe 233 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00289 10e0de419c68afa90ba75c7881039abe 233 SUPERFAMILY SSF52540 4 226 5.98E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00289 10e0de419c68afa90ba75c7881039abe 233 SMART SM00382 29 212 1.6E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01580 f3db6f68bd5358fdcac039100f0ed991 210 Gene3D G3DSA:3.40.50.150 35 207 4.3E-36 T 12-10-2018 AMJ96_CH01580 f3db6f68bd5358fdcac039100f0ed991 210 SUPERFAMILY SSF53335 25 198 1.56E-37 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH01580 f3db6f68bd5358fdcac039100f0ed991 210 Pfam PF13489 Methyltransferase domain 41 187 5.5E-23 T 12-10-2018 AMJ96_PA00275 b139e49c0939d02b200600be482cd640 189 Gene3D G3DSA:2.60.120.590 42 189 8.2E-34 T 12-10-2018 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily AMJ96_PA00275 b139e49c0939d02b200600be482cd640 189 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 62 185 2.0E-20 T 12-10-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like AMJ96_PA00275 b139e49c0939d02b200600be482cd640 189 SUPERFAMILY SSF51197 15 186 1.19E-36 T 12-10-2018 AMJ96_CH04357 3e61e09e15fc4b6953b83cb9405a884f 539 Pfam PF00990 Diguanylate cyclase, GGDEF domain 351 510 1.8E-42 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH04357 3e61e09e15fc4b6953b83cb9405a884f 539 Gene3D G3DSA:3.30.70.270 341 514 4.9E-54 T 12-10-2018 AMJ96_CH04357 3e61e09e15fc4b6953b83cb9405a884f 539 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 348 513 3.8E-48 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH04357 3e61e09e15fc4b6953b83cb9405a884f 539 SUPERFAMILY SSF55073 356 513 1.18E-45 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH04357 3e61e09e15fc4b6953b83cb9405a884f 539 SMART SM00267 340 515 5.6E-54 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH03902 c596d1e0030b48d89f7f417509edf40d 484 PIRSF PIRSF000538 1 484 1.1E-126 T 12-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AMJ96_CH03902 c596d1e0030b48d89f7f417509edf40d 484 Gene3D G3DSA:3.30.420.40 1 243 1.6E-80 T 12-10-2018 AMJ96_CH03902 c596d1e0030b48d89f7f417509edf40d 484 Gene3D G3DSA:3.30.420.40 244 483 1.9E-68 T 12-10-2018 AMJ96_CH03902 c596d1e0030b48d89f7f417509edf40d 484 SUPERFAMILY SSF53067 2 244 1.67E-70 T 12-10-2018 AMJ96_CH03902 c596d1e0030b48d89f7f417509edf40d 484 SUPERFAMILY SSF53067 244 481 4.36E-56 T 12-10-2018 AMJ96_CH03902 c596d1e0030b48d89f7f417509edf40d 484 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 127 139 - T 12-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AMJ96_CH03902 c596d1e0030b48d89f7f417509edf40d 484 TIGRFAM TIGR01312 XylB: xylulokinase 3 476 1.2E-177 T 12-10-2018 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 AMJ96_CH03902 c596d1e0030b48d89f7f417509edf40d 484 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 251 436 2.5E-30 T 12-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AMJ96_CH03902 c596d1e0030b48d89f7f417509edf40d 484 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 1 242 2.0E-68 T 12-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AMJ96_PA00274 586de7b7d7e7a8a13bb66b6abb235f68 159 SUPERFAMILY SSF50475 8 130 4.3E-31 T 12-10-2018 AMJ96_PA00274 586de7b7d7e7a8a13bb66b6abb235f68 159 Gene3D G3DSA:2.30.110.10 3 159 2.8E-46 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMJ96_PA00274 586de7b7d7e7a8a13bb66b6abb235f68 159 Pfam PF16242 Pyridoxamine 5'-phosphate oxidase like 5 149 3.0E-46 T 12-10-2018 IPR038725 General stress protein, FMN-binding split barrel domain AMJ96_PA00261 df2aa477d541ac8ee6c6f31adbb21906 139 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 85 99 5.1E-10 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AMJ96_PA00261 df2aa477d541ac8ee6c6f31adbb21906 139 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 100 113 5.1E-10 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AMJ96_PA00261 df2aa477d541ac8ee6c6f31adbb21906 139 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 68 81 5.1E-10 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AMJ96_PA00261 df2aa477d541ac8ee6c6f31adbb21906 139 SUPERFAMILY SSF51230 63 138 4.58E-18 T 12-10-2018 IPR011053 Single hybrid motif AMJ96_PA00261 df2aa477d541ac8ee6c6f31adbb21906 139 Gene3D G3DSA:2.40.50.100 61 138 1.3E-22 T 12-10-2018 AMJ96_PA00261 df2aa477d541ac8ee6c6f31adbb21906 139 Pfam PF00364 Biotin-requiring enzyme 65 138 2.6E-16 T 12-10-2018 IPR000089 Biotin/lipoyl attachment AMJ96_PA00261 df2aa477d541ac8ee6c6f31adbb21906 139 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 95 112 - T 12-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_CH02693 56356a6bb1a4b8f8c4ad4edf4de9310a 139 Gene3D G3DSA:3.90.79.10 2 133 1.9E-27 T 12-10-2018 AMJ96_CH02693 56356a6bb1a4b8f8c4ad4edf4de9310a 139 PRINTS PR00502 NUDIX hydrolase family signature 31 45 1.3E-7 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMJ96_CH02693 56356a6bb1a4b8f8c4ad4edf4de9310a 139 PRINTS PR00502 NUDIX hydrolase family signature 45 60 1.3E-7 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMJ96_CH02693 56356a6bb1a4b8f8c4ad4edf4de9310a 139 SUPERFAMILY SSF55811 5 119 1.76E-28 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_CH02693 56356a6bb1a4b8f8c4ad4edf4de9310a 139 ProSitePatterns PS00893 Nudix box signature. 36 57 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMJ96_CH02693 56356a6bb1a4b8f8c4ad4edf4de9310a 139 Pfam PF00293 NUDIX domain 4 115 5.4E-22 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMJ96_CH01933 bb9708c93bc43e73bb13976e4a8beddc 252 Pfam PF01323 DSBA-like thioredoxin domain 96 240 1.3E-21 T 12-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 AMJ96_CH01933 bb9708c93bc43e73bb13976e4a8beddc 252 Gene3D G3DSA:3.40.30.10 71 246 2.1E-40 T 12-10-2018 AMJ96_CH01933 bb9708c93bc43e73bb13976e4a8beddc 252 SUPERFAMILY SSF52833 72 242 6.08E-40 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH00171 d65a096d85bfd16fe4c41aebd8a5d954 291 PIRSF PIRSF011468 1 288 1.3E-164 T 12-10-2018 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_CH00171 d65a096d85bfd16fe4c41aebd8a5d954 291 Pfam PF06007 Phosphonate metabolism protein PhnJ 6 277 3.3E-147 T 12-10-2018 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_PA00240 0b14924112fb00cf0d7464b85b367cc7 390 Gene3D G3DSA:3.40.50.720 17 362 7.5E-106 T 12-10-2018 AMJ96_PA00240 0b14924112fb00cf0d7464b85b367cc7 390 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 155 277 3.7E-13 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AMJ96_PA00240 0b14924112fb00cf0d7464b85b367cc7 390 SUPERFAMILY SSF55347 147 326 7.03E-26 T 12-10-2018 AMJ96_PA00240 0b14924112fb00cf0d7464b85b367cc7 390 Gene3D G3DSA:3.30.360.10 147 387 7.5E-106 T 12-10-2018 AMJ96_PA00240 0b14924112fb00cf0d7464b85b367cc7 390 SUPERFAMILY SSF51735 9 173 1.82E-39 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PA00240 0b14924112fb00cf0d7464b85b367cc7 390 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 12 142 2.2E-25 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_CH03716 072d454a47b2dbe827dd2ce0f8514c5a 169 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 7 154 9.2E-45 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMJ96_CH03716 072d454a47b2dbe827dd2ce0f8514c5a 169 SUPERFAMILY SSF53098 6 159 1.8E-49 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_CH03716 072d454a47b2dbe827dd2ce0f8514c5a 169 Gene3D G3DSA:3.30.420.10 7 161 1.5E-44 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_CH03716 072d454a47b2dbe827dd2ce0f8514c5a 169 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 7 157 4.4E-41 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMJ96_CH03716 072d454a47b2dbe827dd2ce0f8514c5a 169 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 5 157 44.817 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMJ96_CH03716 072d454a47b2dbe827dd2ce0f8514c5a 169 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 117 151 - T 12-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 AMJ96_CH03716 072d454a47b2dbe827dd2ce0f8514c5a 169 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 65 81 2.3E-30 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMJ96_CH03716 072d454a47b2dbe827dd2ce0f8514c5a 169 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 142 154 2.3E-30 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMJ96_CH03716 072d454a47b2dbe827dd2ce0f8514c5a 169 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 111 130 2.3E-30 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMJ96_CH03716 072d454a47b2dbe827dd2ce0f8514c5a 169 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 8 21 2.3E-30 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMJ96_CH03716 072d454a47b2dbe827dd2ce0f8514c5a 169 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 87 103 2.3E-30 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AMJ96_CH02153 c12fd5c0d229d1b14c3760e0a34d60cb 127 SUPERFAMILY SSF109910 36 114 7.06E-25 T 12-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily AMJ96_CH02153 c12fd5c0d229d1b14c3760e0a34d60cb 127 Gene3D G3DSA:1.10.150.250 36 114 2.4E-24 T 12-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily AMJ96_CH02153 c12fd5c0d229d1b14c3760e0a34d60cb 127 Pfam PF03937 Flavinator of succinate dehydrogenase 41 112 5.4E-26 T 12-10-2018 IPR005631 Flavinator of succinate dehydrogenase AMJ96_CH01355 c1de227d4419f9392c4a2598ac9cd84b 314 SMART SM00046 2 131 0.0011 T 12-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AMJ96_CH01355 c1de227d4419f9392c4a2598ac9cd84b 314 Pfam PF00781 Diacylglycerol kinase catalytic domain 4 126 2.1E-21 T 12-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AMJ96_CH01355 c1de227d4419f9392c4a2598ac9cd84b 314 Gene3D G3DSA:3.40.50.10330 15 125 1.2E-22 T 12-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 AMJ96_CH01355 c1de227d4419f9392c4a2598ac9cd84b 314 Gene3D G3DSA:2.60.200.40 126 289 2.8E-17 T 12-10-2018 AMJ96_CH01355 c1de227d4419f9392c4a2598ac9cd84b 314 SUPERFAMILY SSF111331 6 298 2.4E-51 T 12-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily AMJ96_CH01248 43a6a49f56ed0deb283fe1c9aa2884f0 230 Pfam PF13280 WYL domain 137 227 1.8E-15 T 12-10-2018 IPR026881 WYL domain AMJ96_CH01248 43a6a49f56ed0deb283fe1c9aa2884f0 230 Gene3D G3DSA:1.10.10.10 1 64 7.9E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01248 43a6a49f56ed0deb283fe1c9aa2884f0 230 Pfam PF08279 HTH domain 6 60 4.1E-15 T 12-10-2018 IPR013196 Helix-turn-helix, type 11 AMJ96_CH01248 43a6a49f56ed0deb283fe1c9aa2884f0 230 SUPERFAMILY SSF46785 1 62 2.1E-8 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00104 7123a552c53b5adfc1f24c6165d40c85 488 Pfam PF02056 Family 4 glycosyl hydrolase 4 185 5.1E-46 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMJ96_PC00104 7123a552c53b5adfc1f24c6165d40c85 488 PRINTS PR00732 Glycosyl hydrolase family 4 signature 4 19 2.6E-16 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMJ96_PC00104 7123a552c53b5adfc1f24c6165d40c85 488 PRINTS PR00732 Glycosyl hydrolase family 4 signature 73 89 2.6E-16 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMJ96_PC00104 7123a552c53b5adfc1f24c6165d40c85 488 PRINTS PR00732 Glycosyl hydrolase family 4 signature 94 107 2.6E-16 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMJ96_PC00104 7123a552c53b5adfc1f24c6165d40c85 488 PRINTS PR00732 Glycosyl hydrolase family 4 signature 140 157 2.6E-16 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMJ96_PC00104 7123a552c53b5adfc1f24c6165d40c85 488 PRINTS PR00732 Glycosyl hydrolase family 4 signature 192 204 2.6E-16 T 12-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AMJ96_PC00104 7123a552c53b5adfc1f24c6165d40c85 488 SUPERFAMILY SSF51735 2 168 1.4E-49 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00104 7123a552c53b5adfc1f24c6165d40c85 488 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 196 415 4.4E-46 T 12-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 AMJ96_PC00104 7123a552c53b5adfc1f24c6165d40c85 488 Gene3D G3DSA:3.90.1820.20 1 439 1.1E-127 T 12-10-2018 AMJ96_PC00104 7123a552c53b5adfc1f24c6165d40c85 488 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 140 170 - T 12-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 AMJ96_PC00104 7123a552c53b5adfc1f24c6165d40c85 488 SUPERFAMILY SSF56327 169 444 3.28E-58 T 12-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AMJ96_CH01192 52a18f243a5b43ee269fe5482329cbb9 153 PIRSF PIRSF029509 1 148 7.5E-46 T 12-10-2018 IPR016923 Uncharacterised conserved protein UCP029509, membrane AMJ96_CH01192 52a18f243a5b43ee269fe5482329cbb9 153 Pfam PF09990 Predicted membrane protein (DUF2231) 44 143 8.3E-24 T 12-10-2018 IPR019251 Domain of unknown function DUF2231, transmembrane AMJ96_CH00694 ead55c069c71321400600f2d99173185 290 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 12-10-2018 IPR000540 Flagellar motor protein MotA, conserved site AMJ96_CH00694 ead55c069c71321400600f2d99173185 290 Pfam PF01618 MotA/TolQ/ExbB proton channel family 132 228 3.6E-11 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel AMJ96_CH00694 ead55c069c71321400600f2d99173185 290 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 1 281 2.7E-108 T 12-10-2018 IPR022522 Flagellar motor stator, MotA AMJ96_PC00111 32f49b0f32491ab02717bce230225864 248 Pfam PF03737 Aldolase/RraA 24 189 4.7E-37 T 12-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AMJ96_PC00111 32f49b0f32491ab02717bce230225864 248 SUPERFAMILY SSF89562 20 200 8.11E-43 T 12-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily AMJ96_PC00111 32f49b0f32491ab02717bce230225864 248 Gene3D G3DSA:3.50.30.100 1 210 8.4E-52 T 12-10-2018 AMJ96_CH03316 27187f7a1febeaa83d079e9578697cf0 80 Gene3D G3DSA:3.40.1620.10 1 40 9.3E-12 T 12-10-2018 AMJ96_CH03316 27187f7a1febeaa83d079e9578697cf0 80 SUPERFAMILY SSF143120 3 50 2.88E-8 T 12-10-2018 IPR036165 YefM-like superfamily AMJ96_CH03316 27187f7a1febeaa83d079e9578697cf0 80 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 46 4.9E-10 T 12-10-2018 AMJ96_CH03316 27187f7a1febeaa83d079e9578697cf0 80 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 3 46 7.1E-10 T 12-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM AMJ96_PA00123 7defb9b15de18c5843796fcadb6e5d12 221 Gene3D G3DSA:2.60.120.10 4 141 1.6E-25 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PA00123 7defb9b15de18c5843796fcadb6e5d12 221 SUPERFAMILY SSF51206 8 140 1.15E-27 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like AMJ96_PA00123 7defb9b15de18c5843796fcadb6e5d12 221 SMART SM00419 166 212 6.0E-4 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00123 7defb9b15de18c5843796fcadb6e5d12 221 Gene3D G3DSA:1.10.10.10 142 221 2.2E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PA00123 7defb9b15de18c5843796fcadb6e5d12 221 Pfam PF00027 Cyclic nucleotide-binding domain 32 119 8.1E-14 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_PA00123 7defb9b15de18c5843796fcadb6e5d12 221 Pfam PF13545 Crp-like helix-turn-helix domain 151 213 5.2E-8 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00123 7defb9b15de18c5843796fcadb6e5d12 221 SMART SM00100 13 134 1.7E-12 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_CH03524 cb8430d3ed747ea2adbb0bf9254aaa53 83 Pfam PF06906 Protein of unknown function (DUF1272) 1 57 9.3E-31 T 12-10-2018 IPR010696 Protein of unknown function DUF1272 AMJ96_PB00360 fc179094b9405af9edf8ab3faa7ba779 205 Pfam PF05401 Nodulation protein S (NodS) 5 205 1.7E-110 T 12-10-2018 IPR008715 SAM-dependent methyltransferase, NodS-related GO:0008757|GO:0009312|GO:0009877 AMJ96_PB00360 fc179094b9405af9edf8ab3faa7ba779 205 SUPERFAMILY SSF53335 17 190 2.46E-29 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_PB00360 fc179094b9405af9edf8ab3faa7ba779 205 Gene3D G3DSA:3.40.50.150 2 205 8.1E-56 T 12-10-2018 AMJ96_PB00360 fc179094b9405af9edf8ab3faa7ba779 205 PIRSF PIRSF009310 1 205 1.0E-107 T 12-10-2018 IPR020944 Nodulation protein S, NodS GO:0008757|GO:0009312|GO:0009877 AMJ96_PD00088 b320620331b45bde723ce73db91325a1 562 SMART SM00911 362 442 1.3E-24 T 12-10-2018 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 AMJ96_PD00088 b320620331b45bde723ce73db91325a1 562 Pfam PF02743 Cache domain 33 254 7.4E-19 T 12-10-2018 IPR033479 Double Cache domain 1 AMJ96_PD00088 b320620331b45bde723ce73db91325a1 562 SUPERFAMILY SSF55874 432 494 9.53E-6 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PD00088 b320620331b45bde723ce73db91325a1 562 Gene3D G3DSA:3.30.450.20 26 167 6.3E-23 T 12-10-2018 AMJ96_PD00088 b320620331b45bde723ce73db91325a1 562 Gene3D G3DSA:3.30.565.10 416 545 1.1E-8 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_PD00088 b320620331b45bde723ce73db91325a1 562 SMART SM00304 295 347 3.7E-5 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00088 b320620331b45bde723ce73db91325a1 562 Gene3D G3DSA:1.10.287.130 295 408 1.4E-5 T 12-10-2018 AMJ96_PD00088 b320620331b45bde723ce73db91325a1 562 Pfam PF07536 HWE histidine kinase 362 442 6.1E-18 T 12-10-2018 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 AMJ96_CH00992 ea6cbea46e3e83a82a6747b368a15c2b 249 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00992 ea6cbea46e3e83a82a6747b368a15c2b 249 SUPERFAMILY SSF52540 3 219 2.34E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00992 ea6cbea46e3e83a82a6747b368a15c2b 249 Pfam PF00005 ABC transporter 21 160 3.0E-24 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00992 ea6cbea46e3e83a82a6747b368a15c2b 249 SMART SM00382 29 209 1.1E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00992 ea6cbea46e3e83a82a6747b368a15c2b 249 Gene3D G3DSA:3.40.50.300 3 244 2.1E-51 T 12-10-2018 AMJ96_PA00011 f582941dce14999bdae868e1c0ca1ba9 198 PIRSF PIRSF006386 1 198 5.0E-38 T 12-10-2018 IPR014440 HCCA isomerase/glutathione S-transferase kappa Reactome: R-HSA-156590|Reactome: R-HSA-9033241 AMJ96_PA00011 f582941dce14999bdae868e1c0ca1ba9 198 SUPERFAMILY SSF52833 4 193 2.37E-32 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_PA00011 f582941dce14999bdae868e1c0ca1ba9 198 Pfam PF01323 DSBA-like thioredoxin domain 5 193 7.2E-23 T 12-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 AMJ96_PA00011 f582941dce14999bdae868e1c0ca1ba9 198 Gene3D G3DSA:3.40.30.10 4 197 7.3E-38 T 12-10-2018 AMJ96_CH00677 475960f2be8ee5577c41150a75c5f332 121 Pfam PF00072 Response regulator receiver domain 5 117 1.4E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00677 475960f2be8ee5577c41150a75c5f332 121 SUPERFAMILY SSF52172 3 120 1.39E-36 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH00677 475960f2be8ee5577c41150a75c5f332 121 SMART SM00448 3 116 1.0E-35 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00677 475960f2be8ee5577c41150a75c5f332 121 Gene3D G3DSA:3.40.50.12740 1 121 7.9E-38 T 12-10-2018 AMJ96_CH04368 251cab19011c9e91f8e9e62f44eae96a 651 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 1 645 53.457 T 12-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 AMJ96_CH04368 251cab19011c9e91f8e9e62f44eae96a 651 ProSitePatterns PS00455 Putative AMP-binding domain signature. 261 272 - T 12-10-2018 IPR020845 AMP-binding, conserved site AMJ96_CH04368 251cab19011c9e91f8e9e62f44eae96a 651 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 19 643 0.0 T 12-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 AMJ96_CH04368 251cab19011c9e91f8e9e62f44eae96a 651 Pfam PF13193 AMP-binding enzyme C-terminal domain 531 609 5.5E-25 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMJ96_CH04368 251cab19011c9e91f8e9e62f44eae96a 651 Gene3D G3DSA:3.30.300.30 518 651 4.3E-26 T 12-10-2018 AMJ96_CH04368 251cab19011c9e91f8e9e62f44eae96a 651 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 23 79 2.2E-21 T 12-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 AMJ96_CH04368 251cab19011c9e91f8e9e62f44eae96a 651 SUPERFAMILY SSF56801 8 644 7.33E-178 T 12-10-2018 AMJ96_CH04368 251cab19011c9e91f8e9e62f44eae96a 651 Pfam PF00501 AMP-binding enzyme 81 522 1.2E-92 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMJ96_CH04368 251cab19011c9e91f8e9e62f44eae96a 651 Gene3D G3DSA:3.40.50.12780 51 515 6.4E-105 T 12-10-2018 AMJ96_CH03704 7f529df1b684c822535fa41876b58b83 239 TIGRFAM TIGR02796 tolQ: protein TolQ 14 226 6.0E-86 T 12-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 AMJ96_CH03704 7f529df1b684c822535fa41876b58b83 239 Pfam PF01618 MotA/TolQ/ExbB proton channel family 83 214 1.6E-37 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel AMJ96_CH03704 7f529df1b684c822535fa41876b58b83 239 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 13 231 40.12 T 12-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 AMJ96_CH02098 1dee521008a541269ff1402d5abd4f4e 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.5E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02098 1dee521008a541269ff1402d5abd4f4e 315 Gene3D G3DSA:1.10.10.10 1 93 5.3E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02098 1dee521008a541269ff1402d5abd4f4e 315 Gene3D G3DSA:3.40.190.290 94 301 3.8E-35 T 12-10-2018 AMJ96_CH02098 1dee521008a541269ff1402d5abd4f4e 315 SUPERFAMILY SSF46785 2 112 4.19E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02098 1dee521008a541269ff1402d5abd4f4e 315 SUPERFAMILY SSF53850 90 300 4.69E-38 T 12-10-2018 AMJ96_CH02098 1dee521008a541269ff1402d5abd4f4e 315 Pfam PF03466 LysR substrate binding domain 89 295 7.9E-39 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH02098 1dee521008a541269ff1402d5abd4f4e 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.4E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02098 1dee521008a541269ff1402d5abd4f4e 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.4E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02098 1dee521008a541269ff1402d5abd4f4e 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.4E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02962 0c2ae35a83eab8255379f055c2e78b7b 318 PIRSF PIRSF005651 1 296 6.7E-73 T 12-10-2018 IPR010200 HflC GO:0016021|GO:0052547 AMJ96_CH02962 0c2ae35a83eab8255379f055c2e78b7b 318 Pfam PF01145 SPFH domain / Band 7 family 25 203 1.4E-22 T 12-10-2018 IPR001107 Band 7 domain AMJ96_CH02962 0c2ae35a83eab8255379f055c2e78b7b 318 Gene3D G3DSA:3.30.479.30 56 190 6.2E-12 T 12-10-2018 AMJ96_CH02962 0c2ae35a83eab8255379f055c2e78b7b 318 SMART SM00244 21 188 1.9E-17 T 12-10-2018 IPR001107 Band 7 domain AMJ96_CH02962 0c2ae35a83eab8255379f055c2e78b7b 318 SUPERFAMILY SSF117892 61 194 9.55E-16 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily AMJ96_CH02909 212cca46c3aecda6190213689f545eb4 221 Gene3D G3DSA:1.10.10.60 1 63 8.6E-29 T 12-10-2018 AMJ96_CH02909 212cca46c3aecda6190213689f545eb4 221 Gene3D G3DSA:1.10.357.10 65 219 1.3E-38 T 12-10-2018 AMJ96_CH02909 212cca46c3aecda6190213689f545eb4 221 SUPERFAMILY SSF46689 14 73 2.65E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02909 212cca46c3aecda6190213689f545eb4 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 64 1.2E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH02909 212cca46c3aecda6190213689f545eb4 221 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 157 208 2.2E-5 T 12-10-2018 IPR039536 Transcriptional regulator TetR, C-terminal, Proteobacteria type AMJ96_PB00399 90be549384e2f2511d385a1cc661384f 88 Pfam PF01527 Transposase 4 71 1.4E-19 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMJ96_PB00399 90be549384e2f2511d385a1cc661384f 88 SUPERFAMILY SSF46689 1 73 2.33E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PB00417 90be549384e2f2511d385a1cc661384f 88 Pfam PF01527 Transposase 4 71 1.4E-19 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMJ96_PB00417 90be549384e2f2511d385a1cc661384f 88 SUPERFAMILY SSF46689 1 73 2.33E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PB00121 90be549384e2f2511d385a1cc661384f 88 Pfam PF01527 Transposase 4 71 1.4E-19 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMJ96_PB00121 90be549384e2f2511d385a1cc661384f 88 SUPERFAMILY SSF46689 1 73 2.33E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH01531 07d5f3289f3caf82c9a30f72aefad0f4 223 Gene3D G3DSA:3.40.50.170 1 204 9.0E-77 T 12-10-2018 AMJ96_CH01531 07d5f3289f3caf82c9a30f72aefad0f4 223 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 7 192 30.724 T 12-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 AMJ96_CH01531 07d5f3289f3caf82c9a30f72aefad0f4 223 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 7 196 5.9E-68 T 12-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 AMJ96_CH01531 07d5f3289f3caf82c9a30f72aefad0f4 223 Pfam PF00551 Formyl transferase 6 186 2.9E-58 T 12-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMJ96_CH01531 07d5f3289f3caf82c9a30f72aefad0f4 223 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 138 161 - T 12-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMJ96_CH01531 07d5f3289f3caf82c9a30f72aefad0f4 223 SUPERFAMILY SSF53328 6 202 4.45E-63 T 12-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AMJ96_CH00574 5a0c0a0f9ec5563ce896e0cec1173d6c 227 Pfam PF03352 Methyladenine glycosylase 45 132 1.8E-10 T 12-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 AMJ96_CH00574 5a0c0a0f9ec5563ce896e0cec1173d6c 227 SUPERFAMILY SSF48150 38 181 3.14E-29 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AMJ96_CH00574 5a0c0a0f9ec5563ce896e0cec1173d6c 227 Gene3D G3DSA:1.10.340.30 28 148 1.0E-14 T 12-10-2018 AMJ96_CH04093 a47e8998cb773a125a50cd512ecc0257 404 SUPERFAMILY SSF53383 3 396 1.61E-113 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH04093 a47e8998cb773a125a50cd512ecc0257 404 Gene3D G3DSA:3.90.1150.10 14 387 5.9E-167 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH04093 a47e8998cb773a125a50cd512ecc0257 404 TIGRFAM TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase 1 401 3.2E-211 T 12-10-2018 IPR010961 Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase GO:0003870|GO:0030170|GO:0033014 KEGG: 00260+2.3.1.37|KEGG: 00860+2.3.1.37|MetaCyc: PWY-5189|MetaCyc: PWY-7536|Reactome: R-HSA-189451 AMJ96_CH04093 a47e8998cb773a125a50cd512ecc0257 404 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 244 253 - T 12-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 AMJ96_CH04093 a47e8998cb773a125a50cd512ecc0257 404 Gene3D G3DSA:3.40.640.10 62 297 5.9E-167 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH04093 a47e8998cb773a125a50cd512ecc0257 404 Pfam PF00155 Aminotransferase class I and II 46 390 9.7E-82 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_CH03249 c69490c48c84cda162d91ff1993994f5 367 SUPERFAMILY SSF53822 23 364 3.36E-91 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH03249 c69490c48c84cda162d91ff1993994f5 367 Gene3D G3DSA:3.40.50.2300 25 339 2.9E-119 T 12-10-2018 AMJ96_CH03249 c69490c48c84cda162d91ff1993994f5 367 Gene3D G3DSA:3.40.50.2300 142 270 2.9E-119 T 12-10-2018 AMJ96_CH03249 c69490c48c84cda162d91ff1993994f5 367 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 275 288 1.8E-22 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_CH03249 c69490c48c84cda162d91ff1993994f5 367 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 24 40 1.8E-22 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_CH03249 c69490c48c84cda162d91ff1993994f5 367 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 86 96 1.8E-22 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_CH03249 c69490c48c84cda162d91ff1993994f5 367 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 65 83 1.8E-22 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_CH03249 c69490c48c84cda162d91ff1993994f5 367 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 46 62 1.8E-22 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_CH03249 c69490c48c84cda162d91ff1993994f5 367 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 252 270 1.8E-22 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_CH03249 c69490c48c84cda162d91ff1993994f5 367 Pfam PF13458 Periplasmic binding protein 24 362 4.0E-65 T 12-10-2018 IPR028081 Leucine-binding protein domain AMJ96_CH02246 0c7d50b7105f599cb0ea0deb69ce1ad2 299 Gene3D G3DSA:3.40.50.1820 112 299 1.5E-18 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02246 0c7d50b7105f599cb0ea0deb69ce1ad2 299 SUPERFAMILY SSF53474 102 297 4.93E-18 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH00095 072d9498f711360a9a55e990f62ebdfc 426 PIRSF PIRSF000521 15 128 4.7E-4 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH00095 072d9498f711360a9a55e990f62ebdfc 426 PIRSF PIRSF000521 122 422 1.4E-37 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH00095 072d9498f711360a9a55e990f62ebdfc 426 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 235 272 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH00095 072d9498f711360a9a55e990f62ebdfc 426 Gene3D G3DSA:3.40.640.10 58 317 1.0E-156 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH00095 072d9498f711360a9a55e990f62ebdfc 426 Pfam PF00202 Aminotransferase class-III 21 417 9.8E-127 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH00095 072d9498f711360a9a55e990f62ebdfc 426 SUPERFAMILY SSF53383 23 418 9.65E-131 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH00095 072d9498f711360a9a55e990f62ebdfc 426 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 9 418 1.2E-181 T 12-10-2018 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 AMJ96_CH00095 072d9498f711360a9a55e990f62ebdfc 426 Gene3D G3DSA:3.90.1150.10 4 416 1.0E-156 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH00866 ef6390f893ad44f1ea302f67c63d07bf 439 SUPERFAMILY SSF53756 59 402 4.6E-12 T 12-10-2018 AMJ96_CH00866 ef6390f893ad44f1ea302f67c63d07bf 439 Gene3D G3DSA:3.40.50.11720 39 213 3.6E-46 T 12-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 AMJ96_CH00866 ef6390f893ad44f1ea302f67c63d07bf 439 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 43 214 3.4E-55 T 12-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 AMJ96_CH00866 ef6390f893ad44f1ea302f67c63d07bf 439 Gene3D G3DSA:3.40.50.2000 221 405 1.3E-51 T 12-10-2018 AMJ96_CH03924 0393c42c9ec1303f6f999871e9ec4593 224 Pfam PF07077 Protein of unknown function (DUF1345) 45 215 1.6E-57 T 12-10-2018 IPR009781 Protein of unknown function DUF1345 AMJ96_CH02202 8b8be54185bd456a6e99ec592a8c828e 280 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 52 65 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site AMJ96_CH02202 8b8be54185bd456a6e99ec592a8c828e 280 Gene3D G3DSA:3.40.190.10 32 274 3.4E-77 T 12-10-2018 AMJ96_CH02202 8b8be54185bd456a6e99ec592a8c828e 280 SMART SM00079 29 277 0.0021 T 12-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AMJ96_CH02202 8b8be54185bd456a6e99ec592a8c828e 280 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 30 276 6.7E-53 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH02202 8b8be54185bd456a6e99ec592a8c828e 280 SUPERFAMILY SSF53850 6 276 4.25E-57 T 12-10-2018 AMJ96_CH02202 8b8be54185bd456a6e99ec592a8c828e 280 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 7 275 4.2E-77 T 12-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 AMJ96_CH02202 8b8be54185bd456a6e99ec592a8c828e 280 Gene3D G3DSA:3.40.190.10 115 234 3.4E-77 T 12-10-2018 AMJ96_CH02202 8b8be54185bd456a6e99ec592a8c828e 280 SMART SM00062 29 278 2.1E-44 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH00220 2bc9223797c0895423bc0e587f4b406e 116 SMART SM00347 22 114 0.0043 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00220 2bc9223797c0895423bc0e587f4b406e 116 Pfam PF12802 MarR family 28 86 3.8E-12 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00220 2bc9223797c0895423bc0e587f4b406e 116 SUPERFAMILY SSF46785 24 110 1.15E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00220 2bc9223797c0895423bc0e587f4b406e 116 Gene3D G3DSA:1.10.10.10 6 114 6.1E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PB00074 d80dd641e07d8e51e049df32de0e5167 404 Gene3D G3DSA:3.30.470.20 173 386 1.8E-31 T 12-10-2018 AMJ96_PB00074 d80dd641e07d8e51e049df32de0e5167 404 Gene3D G3DSA:3.40.50.20 85 172 8.9E-16 T 12-10-2018 AMJ96_PB00074 d80dd641e07d8e51e049df32de0e5167 404 SUPERFAMILY SSF52440 91 184 1.82E-17 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMJ96_PB00074 d80dd641e07d8e51e049df32de0e5167 404 Gene3D G3DSA:3.30.1490.20 199 267 1.8E-31 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMJ96_PB00074 d80dd641e07d8e51e049df32de0e5167 404 Pfam PF01820 D-ala D-ala ligase N-terminus 93 173 1.2E-8 T 12-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_PB00074 d80dd641e07d8e51e049df32de0e5167 404 Pfam PF07478 D-ala D-ala ligase C-terminus 223 385 2.1E-17 T 12-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 AMJ96_PB00074 d80dd641e07d8e51e049df32de0e5167 404 SUPERFAMILY SSF56059 184 370 3.7E-24 T 12-10-2018 AMJ96_CH00254 ce3aee8eb58c6d8fe7ce706648114c42 184 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 133 165 1.1E-9 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH00254 ce3aee8eb58c6d8fe7ce706648114c42 184 Gene3D G3DSA:2.160.10.10 1 184 1.9E-64 T 12-10-2018 AMJ96_CH00254 ce3aee8eb58c6d8fe7ce706648114c42 184 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 139 167 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMJ96_CH00254 ce3aee8eb58c6d8fe7ce706648114c42 184 SUPERFAMILY SSF51161 3 183 2.08E-53 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily AMJ96_CH00254 ce3aee8eb58c6d8fe7ce706648114c42 184 Pfam PF12464 Maltose acetyltransferase 7 56 4.1E-9 T 12-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 AMJ96_CH00254 ce3aee8eb58c6d8fe7ce706648114c42 184 SMART SM01266 5 59 1.8E-13 T 12-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 AMJ96_PA00153 3c4433c6da57d395f9ae30e9a086d2bd 384 Pfam PF07732 Multicopper oxidase 96 204 4.1E-9 T 12-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 AMJ96_PA00153 3c4433c6da57d395f9ae30e9a086d2bd 384 Pfam PF00394 Multicopper oxidase 219 370 2.1E-21 T 12-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 AMJ96_PA00153 3c4433c6da57d395f9ae30e9a086d2bd 384 SUPERFAMILY SSF49503 210 380 7.24E-74 T 12-10-2018 IPR008972 Cupredoxin AMJ96_PA00153 3c4433c6da57d395f9ae30e9a086d2bd 384 Gene3D G3DSA:2.60.40.420 45 202 1.5E-40 T 12-10-2018 IPR008972 Cupredoxin AMJ96_PA00153 3c4433c6da57d395f9ae30e9a086d2bd 384 TIGRFAM TIGR02376 Cu_nitrite_red: nitrite reductase, copper-containing 57 381 2.4E-166 T 12-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 AMJ96_PA00153 3c4433c6da57d395f9ae30e9a086d2bd 384 PRINTS PR00695 Copper containing nitrite reductase signature 107 123 6.6E-62 T 12-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 AMJ96_PA00153 3c4433c6da57d395f9ae30e9a086d2bd 384 PRINTS PR00695 Copper containing nitrite reductase signature 142 161 6.6E-62 T 12-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 AMJ96_PA00153 3c4433c6da57d395f9ae30e9a086d2bd 384 PRINTS PR00695 Copper containing nitrite reductase signature 167 182 6.6E-62 T 12-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 AMJ96_PA00153 3c4433c6da57d395f9ae30e9a086d2bd 384 PRINTS PR00695 Copper containing nitrite reductase signature 125 142 6.6E-62 T 12-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 AMJ96_PA00153 3c4433c6da57d395f9ae30e9a086d2bd 384 PRINTS PR00695 Copper containing nitrite reductase signature 80 98 6.6E-62 T 12-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 AMJ96_PA00153 3c4433c6da57d395f9ae30e9a086d2bd 384 PRINTS PR00695 Copper containing nitrite reductase signature 185 201 6.6E-62 T 12-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 AMJ96_PA00153 3c4433c6da57d395f9ae30e9a086d2bd 384 SUPERFAMILY SSF49503 56 207 1.09E-37 T 12-10-2018 IPR008972 Cupredoxin AMJ96_PA00153 3c4433c6da57d395f9ae30e9a086d2bd 384 Gene3D G3DSA:2.60.40.420 203 383 3.3E-54 T 12-10-2018 IPR008972 Cupredoxin AMJ96_PB00057 a1ca3deb2962b02a661342f58a33fd7b 155 SUPERFAMILY SSF50876 35 144 2.3E-34 T 12-10-2018 IPR036896 Avidin-like superfamily AMJ96_PB00057 a1ca3deb2962b02a661342f58a33fd7b 155 Pfam PF01382 Avidin family 35 142 3.5E-20 T 12-10-2018 IPR005468 Avidin/streptavidin AMJ96_PB00057 a1ca3deb2962b02a661342f58a33fd7b 155 Gene3D G3DSA:2.40.128.30 21 155 1.1E-55 T 12-10-2018 IPR036896 Avidin-like superfamily AMJ96_CH01810 d55f2969e78f6e2c5bf6261cca056805 124 Pfam PF04892 VanZ like family 42 106 1.5E-7 T 12-10-2018 IPR006976 VanZ-like AMJ96_CH01810 d55f2969e78f6e2c5bf6261cca056805 124 PIRSF PIRSF033367 1 123 6.9E-56 T 12-10-2018 IPR017015 Uncharacterised conserved protein UCP033367, VanZ, Bll3170 AMJ96_CH01333 e872bb0e4e60418b13bf3adf967ee502 533 SUPERFAMILY SSF50494 43 333 2.06E-59 T 12-10-2018 IPR009003 Peptidase S1, PA clan AMJ96_CH01333 e872bb0e4e60418b13bf3adf967ee502 533 PRINTS PR00834 HtrA/DegQ protease family signature 179 199 3.7E-58 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01333 e872bb0e4e60418b13bf3adf967ee502 533 PRINTS PR00834 HtrA/DegQ protease family signature 255 272 3.7E-58 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01333 e872bb0e4e60418b13bf3adf967ee502 533 PRINTS PR00834 HtrA/DegQ protease family signature 277 294 3.7E-58 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01333 e872bb0e4e60418b13bf3adf967ee502 533 PRINTS PR00834 HtrA/DegQ protease family signature 158 170 3.7E-58 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01333 e872bb0e4e60418b13bf3adf967ee502 533 PRINTS PR00834 HtrA/DegQ protease family signature 221 245 3.7E-58 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01333 e872bb0e4e60418b13bf3adf967ee502 533 PRINTS PR00834 HtrA/DegQ protease family signature 363 375 3.7E-58 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01333 e872bb0e4e60418b13bf3adf967ee502 533 Pfam PF13180 PDZ domain 323 414 4.5E-17 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH01333 e872bb0e4e60418b13bf3adf967ee502 533 Pfam PF13180 PDZ domain 446 510 2.7E-8 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH01333 e872bb0e4e60418b13bf3adf967ee502 533 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 52 525 5.8E-137 T 12-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 AMJ96_CH01333 e872bb0e4e60418b13bf3adf967ee502 533 Pfam PF13365 Trypsin-like peptidase domain 149 284 5.1E-32 T 12-10-2018 AMJ96_CH01333 e872bb0e4e60418b13bf3adf967ee502 533 SUPERFAMILY SSF50156 306 414 9.86E-23 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 AMJ96_CH01333 e872bb0e4e60418b13bf3adf967ee502 533 SMART SM00228 323 405 2.6E-12 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH01333 e872bb0e4e60418b13bf3adf967ee502 533 SMART SM00228 446 520 2.4E-6 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH01333 e872bb0e4e60418b13bf3adf967ee502 533 Gene3D G3DSA:2.40.10.10 213 322 2.9E-39 T 12-10-2018 AMJ96_CH01333 e872bb0e4e60418b13bf3adf967ee502 533 SUPERFAMILY SSF50156 444 508 6.7E-11 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 AMJ96_CH01333 e872bb0e4e60418b13bf3adf967ee502 533 Gene3D G3DSA:2.30.42.10 444 527 6.6E-12 T 12-10-2018 AMJ96_CH01333 e872bb0e4e60418b13bf3adf967ee502 533 Gene3D G3DSA:2.40.10.10 51 211 6.2E-31 T 12-10-2018 AMJ96_CH01333 e872bb0e4e60418b13bf3adf967ee502 533 Gene3D G3DSA:2.30.42.10 323 426 1.7E-27 T 12-10-2018 AMJ96_CH03184 83c464cb5f52b00cd8b7b0bd207d713f 204 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 8 185 3.9E-47 T 12-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMJ96_CH03184 83c464cb5f52b00cd8b7b0bd207d713f 204 Gene3D G3DSA:2.170.120.20 101 193 8.2E-27 T 12-10-2018 IPR037121 Ribosomal protein L25, C-terminal AMJ96_CH03184 83c464cb5f52b00cd8b7b0bd207d713f 204 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 6 188 30.559 T 12-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMJ96_CH03184 83c464cb5f52b00cd8b7b0bd207d713f 204 Gene3D G3DSA:2.40.240.10 3 98 2.9E-31 T 12-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMJ96_CH03184 83c464cb5f52b00cd8b7b0bd207d713f 204 SUPERFAMILY SSF50715 5 191 7.32E-63 T 12-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AMJ96_CH03184 83c464cb5f52b00cd8b7b0bd207d713f 204 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 7 98 4.0E-44 T 12-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMJ96_CH03184 83c464cb5f52b00cd8b7b0bd207d713f 204 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 104 187 6.6E-30 T 12-10-2018 IPR020057 Ribosomal protein L25, beta domain AMJ96_CH03184 83c464cb5f52b00cd8b7b0bd207d713f 204 Pfam PF01386 Ribosomal L25p family 8 95 3.2E-26 T 12-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 AMJ96_PC00337 52418fb5c6a322c0ca20a8ded8690ed2 456 SUPERFAMILY SSF75304 7 452 1.44E-108 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMJ96_PC00337 52418fb5c6a322c0ca20a8ded8690ed2 456 ProSitePatterns PS00571 Amidases signature. 156 187 - T 12-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 AMJ96_PC00337 52418fb5c6a322c0ca20a8ded8690ed2 456 Gene3D G3DSA:3.90.1300.10 8 452 3.8E-115 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMJ96_PC00337 52418fb5c6a322c0ca20a8ded8690ed2 456 Pfam PF01425 Amidase 27 441 4.2E-79 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMJ96_CH03916 f49db5c4f32e80a70e74a432b341ef18 270 Gene3D G3DSA:1.10.3720.10 19 264 5.7E-47 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03916 f49db5c4f32e80a70e74a432b341ef18 270 SUPERFAMILY SSF161098 12 263 3.92E-49 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03916 f49db5c4f32e80a70e74a432b341ef18 270 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 256 2.0E-12 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00321 989134f29e57d7ca042216966319c625 395 Gene3D G3DSA:3.30.390.10 1 107 5.6E-29 T 12-10-2018 IPR029017 Enolase-like, N-terminal AMJ96_PD00321 989134f29e57d7ca042216966319c625 395 SUPERFAMILY SSF51604 98 374 3.54E-63 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_PD00321 989134f29e57d7ca042216966319c625 395 Pfam PF13378 Enolase C-terminal domain-like 133 370 6.0E-53 T 12-10-2018 IPR029065 Enolase C-terminal domain-like AMJ96_PD00321 989134f29e57d7ca042216966319c625 395 SMART SM00922 129 237 1.8E-7 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMJ96_PD00321 989134f29e57d7ca042216966319c625 395 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 12 110 3.8E-16 T 12-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMJ96_PD00321 989134f29e57d7ca042216966319c625 395 Gene3D G3DSA:3.20.20.120 108 378 9.2E-110 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_PD00321 989134f29e57d7ca042216966319c625 395 SUPERFAMILY SSF54826 1 115 1.41E-27 T 12-10-2018 AMJ96_CH01829 0f2dc29554c304645513a71f19448846 278 Gene3D G3DSA:3.40.50.720 7 254 1.3E-57 T 12-10-2018 AMJ96_CH01829 0f2dc29554c304645513a71f19448846 278 Pfam PF00106 short chain dehydrogenase 12 199 9.3E-48 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01829 0f2dc29554c304645513a71f19448846 278 SUPERFAMILY SSF51735 9 262 2.45E-59 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01829 0f2dc29554c304645513a71f19448846 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 7.4E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01829 0f2dc29554c304645513a71f19448846 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 7.4E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01829 0f2dc29554c304645513a71f19448846 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 7.4E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01829 0f2dc29554c304645513a71f19448846 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 1.1E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01829 0f2dc29554c304645513a71f19448846 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 1.1E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01829 0f2dc29554c304645513a71f19448846 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 1.1E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01829 0f2dc29554c304645513a71f19448846 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 1.1E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01829 0f2dc29554c304645513a71f19448846 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 1.1E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02314 c8f1dc8412a795e5b3cfa05a9252b60c 489 Pfam PF01458 Uncharacterized protein family (UPF0051) 227 460 1.6E-66 T 12-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 AMJ96_CH02314 c8f1dc8412a795e5b3cfa05a9252b60c 489 SUPERFAMILY SSF101960 39 486 1.18E-135 T 12-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily AMJ96_CH02314 c8f1dc8412a795e5b3cfa05a9252b60c 489 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 18 480 9.3E-189 T 12-10-2018 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 AMJ96_PB00337 895b7dbf74a67cd5fd121bce3aad3044 426 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 342 351 - T 12-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 AMJ96_PB00337 895b7dbf74a67cd5fd121bce3aad3044 426 Pfam PF00067 Cytochrome P450 30 370 2.8E-27 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00337 895b7dbf74a67cd5fd121bce3aad3044 426 PRINTS PR00385 P450 superfamily signature 349 360 3.0E-7 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00337 895b7dbf74a67cd5fd121bce3aad3044 426 PRINTS PR00385 P450 superfamily signature 271 282 3.0E-7 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00337 895b7dbf74a67cd5fd121bce3aad3044 426 PRINTS PR00385 P450 superfamily signature 236 253 3.0E-7 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00337 895b7dbf74a67cd5fd121bce3aad3044 426 PRINTS PR00385 P450 superfamily signature 340 349 3.0E-7 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00337 895b7dbf74a67cd5fd121bce3aad3044 426 Gene3D G3DSA:1.10.630.10 11 410 7.7E-110 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00337 895b7dbf74a67cd5fd121bce3aad3044 426 SUPERFAMILY SSF48264 9 403 5.37E-87 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PB00337 895b7dbf74a67cd5fd121bce3aad3044 426 PRINTS PR00359 B-class P450 signature 291 318 7.1E-41 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00337 895b7dbf74a67cd5fd121bce3aad3044 426 PRINTS PR00359 B-class P450 signature 191 213 7.1E-41 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00337 895b7dbf74a67cd5fd121bce3aad3044 426 PRINTS PR00359 B-class P450 signature 87 98 7.1E-41 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00337 895b7dbf74a67cd5fd121bce3aad3044 426 PRINTS PR00359 B-class P450 signature 271 282 7.1E-41 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00337 895b7dbf74a67cd5fd121bce3aad3044 426 PRINTS PR00359 B-class P450 signature 319 334 7.1E-41 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00337 895b7dbf74a67cd5fd121bce3aad3044 426 PRINTS PR00359 B-class P450 signature 349 360 7.1E-41 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00337 895b7dbf74a67cd5fd121bce3aad3044 426 PRINTS PR00359 B-class P450 signature 340 349 7.1E-41 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00337 895b7dbf74a67cd5fd121bce3aad3044 426 PRINTS PR00359 B-class P450 signature 134 150 7.1E-41 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PB00337 895b7dbf74a67cd5fd121bce3aad3044 426 PRINTS PR00359 B-class P450 signature 151 166 7.1E-41 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_PD00021 dee0ca3e693f88316b8a0cb94e2bde03 136 Gene3D G3DSA:2.60.120.10 21 136 3.6E-17 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PD00021 dee0ca3e693f88316b8a0cb94e2bde03 136 SUPERFAMILY SSF51182 41 128 3.34E-16 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_PD00021 dee0ca3e693f88316b8a0cb94e2bde03 136 Pfam PF07883 Cupin domain 50 123 1.9E-12 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_CH01734 71ea2e1d08e2c9f6ac33600e3ccf47e6 158 SUPERFAMILY SSF52080 4 150 2.75E-44 T 12-10-2018 IPR036227 Ribosomal L18e/L15P superfamily AMJ96_CH01734 71ea2e1d08e2c9f6ac33600e3ccf47e6 158 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 149 2.8E-36 T 12-10-2018 IPR021131 Ribosomal protein L18e/L15P AMJ96_CH01734 71ea2e1d08e2c9f6ac33600e3ccf47e6 158 Gene3D G3DSA:3.100.10.10 65 153 1.9E-19 T 12-10-2018 AMJ96_CH01734 71ea2e1d08e2c9f6ac33600e3ccf47e6 158 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 148 2.7E-47 T 12-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01734 71ea2e1d08e2c9f6ac33600e3ccf47e6 158 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 151 20.241 T 12-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 AMJ96_CH01734 71ea2e1d08e2c9f6ac33600e3ccf47e6 158 ProSitePatterns PS00475 Ribosomal protein L15 signature. 115 145 - T 12-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH00090 f8594537d9afec67e12b90868cd8d590 816 Gene3D G3DSA:3.30.9.10 90 325 1.9E-142 T 12-10-2018 AMJ96_CH00090 f8594537d9afec67e12b90868cd8d590 816 SUPERFAMILY SSF103025 418 722 1.73E-102 T 12-10-2018 AMJ96_CH00090 f8594537d9afec67e12b90868cd8d590 816 Pfam PF16350 FAD dependent oxidoreductase central domain 369 423 2.1E-19 T 12-10-2018 IPR032503 FAD dependent oxidoreductase, central domain AMJ96_CH00090 f8594537d9afec67e12b90868cd8d590 816 Gene3D G3DSA:2.40.30.110 722 801 1.2E-18 T 12-10-2018 AMJ96_CH00090 f8594537d9afec67e12b90868cd8d590 816 Gene3D G3DSA:3.50.50.60 12 384 1.9E-142 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH00090 f8594537d9afec67e12b90868cd8d590 816 Gene3D G3DSA:3.30.70.1400 491 713 2.0E-113 T 12-10-2018 AMJ96_CH00090 f8594537d9afec67e12b90868cd8d590 816 SUPERFAMILY SSF101790 723 816 2.29E-19 T 12-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal AMJ96_CH00090 f8594537d9afec67e12b90868cd8d590 816 SUPERFAMILY SSF51905 9 411 3.88E-64 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH00090 f8594537d9afec67e12b90868cd8d590 816 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 708 802 2.4E-17 T 12-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AMJ96_CH00090 f8594537d9afec67e12b90868cd8d590 816 Pfam PF01266 FAD dependent oxidoreductase 11 365 2.5E-58 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_CH00090 f8594537d9afec67e12b90868cd8d590 816 SUPERFAMILY SSF54373 224 325 8.63E-30 T 12-10-2018 AMJ96_CH00090 f8594537d9afec67e12b90868cd8d590 816 Gene3D G3DSA:3.30.1360.120 423 688 2.0E-113 T 12-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 AMJ96_CH00090 f8594537d9afec67e12b90868cd8d590 816 Pfam PF01571 Aminomethyltransferase folate-binding domain 425 699 4.5E-81 T 12-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain AMJ96_CH02102 1399732bef4acc50d036a6a083ed6bb0 366 Gene3D G3DSA:3.30.360.10 128 345 9.1E-38 T 12-10-2018 AMJ96_CH02102 1399732bef4acc50d036a6a083ed6bb0 366 Gene3D G3DSA:3.40.50.720 1 124 3.8E-27 T 12-10-2018 AMJ96_CH02102 1399732bef4acc50d036a6a083ed6bb0 366 SUPERFAMILY SSF55347 129 294 2.29E-31 T 12-10-2018 AMJ96_CH02102 1399732bef4acc50d036a6a083ed6bb0 366 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 117 1.4E-17 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_CH02102 1399732bef4acc50d036a6a083ed6bb0 366 SUPERFAMILY SSF51735 3 152 4.5E-36 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00050 f2dd2ecf65d38756416b3063c8eef2c5 334 Gene3D G3DSA:3.40.50.2300 161 297 1.8E-46 T 12-10-2018 AMJ96_PD00050 f2dd2ecf65d38756416b3063c8eef2c5 334 SMART SM00354 2 73 4.2E-17 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00050 f2dd2ecf65d38756416b3063c8eef2c5 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 50 2.9E-14 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00050 f2dd2ecf65d38756416b3063c8eef2c5 334 Pfam PF13377 Periplasmic binding protein-like domain 170 334 1.0E-30 T 12-10-2018 AMJ96_PD00050 f2dd2ecf65d38756416b3063c8eef2c5 334 Gene3D G3DSA:3.40.50.2300 57 313 1.8E-46 T 12-10-2018 AMJ96_PD00050 f2dd2ecf65d38756416b3063c8eef2c5 334 SUPERFAMILY SSF47413 3 59 6.67E-14 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PD00050 f2dd2ecf65d38756416b3063c8eef2c5 334 Gene3D G3DSA:1.10.260.40 1 56 3.2E-19 T 12-10-2018 AMJ96_PD00050 f2dd2ecf65d38756416b3063c8eef2c5 334 SUPERFAMILY SSF53822 64 334 5.35E-39 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PA00302 8659d28dc071dd5941b65e22975804b9 361 Gene3D G3DSA:3.30.420.40 189 353 2.8E-14 T 12-10-2018 AMJ96_PA00302 8659d28dc071dd5941b65e22975804b9 361 SUPERFAMILY SSF53067 132 324 1.41E-24 T 12-10-2018 AMJ96_CH01572 ea9da5d04f6415c3a104a67d59a60884 375 Pfam PF17038 Cellulose biosynthesis protein BcsN 84 373 3.4E-56 T 12-10-2018 IPR031482 Cellulose biosynthesis protein BcsN AMJ96_CH02928 e7f806857eda84bae403f24d15ffe589 305 Gene3D G3DSA:3.40.630.30 162 294 6.9E-22 T 12-10-2018 AMJ96_CH02928 e7f806857eda84bae403f24d15ffe589 305 SMART SM00347 26 126 3.5E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH02928 e7f806857eda84bae403f24d15ffe589 305 SUPERFAMILY SSF55729 150 292 5.15E-25 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH02928 e7f806857eda84bae403f24d15ffe589 305 Pfam PF13673 Acetyltransferase (GNAT) domain 195 290 7.9E-12 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH02928 e7f806857eda84bae403f24d15ffe589 305 Gene3D G3DSA:1.10.10.10 4 138 1.7E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02928 e7f806857eda84bae403f24d15ffe589 305 Pfam PF12802 MarR family 34 90 7.2E-17 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH02928 e7f806857eda84bae403f24d15ffe589 305 SUPERFAMILY SSF46785 8 141 1.1E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01323 dae64d0fdd30e7710c446c4c21cb6a13 101 Gene3D G3DSA:3.30.70.100 1 92 2.1E-15 T 12-10-2018 AMJ96_CH01323 dae64d0fdd30e7710c446c4c21cb6a13 101 Pfam PF07876 Stress responsive A/B Barrel Domain 2 92 5.6E-21 T 12-10-2018 IPR013097 Stress responsive alpha-beta barrel AMJ96_CH01323 dae64d0fdd30e7710c446c4c21cb6a13 101 SMART SM00886 2 93 2.8E-21 T 12-10-2018 IPR013097 Stress responsive alpha-beta barrel AMJ96_CH01323 dae64d0fdd30e7710c446c4c21cb6a13 101 SUPERFAMILY SSF54909 2 91 9.73E-20 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH00452 7282666c0c077aac5857579dbaf50a81 596 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 374 572 2.7E-65 T 12-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH00452 7282666c0c077aac5857579dbaf50a81 596 Gene3D G3DSA:2.70.98.90 82 351 2.1E-39 T 12-10-2018 IPR038221 YidC, periplasmic domain superfamily AMJ96_CH00452 7282666c0c077aac5857579dbaf50a81 596 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 5 574 22.772 T 12-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 AMJ96_CH00452 7282666c0c077aac5857579dbaf50a81 596 PRINTS PR00701 60kDa inner membrane protein signature 436 459 1.4E-17 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMJ96_CH00452 7282666c0c077aac5857579dbaf50a81 596 PRINTS PR00701 60kDa inner membrane protein signature 265 280 1.4E-17 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMJ96_CH00452 7282666c0c077aac5857579dbaf50a81 596 PRINTS PR00701 60kDa inner membrane protein signature 91 112 1.4E-17 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMJ96_CH00452 7282666c0c077aac5857579dbaf50a81 596 PRINTS PR00701 60kDa inner membrane protein signature 345 365 1.4E-17 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMJ96_CH00452 7282666c0c077aac5857579dbaf50a81 596 Pfam PF14849 YidC periplasmic domain 85 364 1.7E-83 T 12-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain AMJ96_CH00452 7282666c0c077aac5857579dbaf50a81 596 Pfam PF02096 60Kd inner membrane protein 375 572 4.1E-57 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMJ96_CH00452 7282666c0c077aac5857579dbaf50a81 596 PRINTS PR01900 YidC translocation/secretion protein signature 527 551 5.9E-22 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMJ96_CH00452 7282666c0c077aac5857579dbaf50a81 596 PRINTS PR01900 YidC translocation/secretion protein signature 508 523 5.9E-22 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMJ96_CH00452 7282666c0c077aac5857579dbaf50a81 596 PRINTS PR01900 YidC translocation/secretion protein signature 360 376 5.9E-22 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 AMJ96_CH00452 7282666c0c077aac5857579dbaf50a81 596 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 4 373 8.1E-106 T 12-10-2018 IPR028053 Membrane insertase YidC, N-terminal AMJ96_PD00383 f53772956556607970aff0d40fe8a69b 357 Gene3D G3DSA:1.10.287.470 91 163 3.0E-60 T 12-10-2018 AMJ96_PD00383 f53772956556607970aff0d40fe8a69b 357 Gene3D G3DSA:2.40.420.20 277 347 3.0E-60 T 12-10-2018 AMJ96_PD00383 f53772956556607970aff0d40fe8a69b 357 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 58 259 8.0E-16 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMJ96_PD00383 f53772956556607970aff0d40fe8a69b 357 Gene3D G3DSA:2.40.50.100 57 203 3.0E-60 T 12-10-2018 AMJ96_PD00383 f53772956556607970aff0d40fe8a69b 357 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 33 350 9.9E-70 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMJ96_PD00383 f53772956556607970aff0d40fe8a69b 357 SUPERFAMILY SSF111369 49 259 7.72E-25 T 12-10-2018 AMJ96_PD00383 f53772956556607970aff0d40fe8a69b 357 Gene3D G3DSA:2.40.30.170 48 276 3.0E-60 T 12-10-2018 AMJ96_CH01960 9c21a0720c86b0ef9a80825e64c57a26 406 Gene3D G3DSA:1.10.3720.10 191 402 5.4E-32 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01960 9c21a0720c86b0ef9a80825e64c57a26 406 SUPERFAMILY SSF161098 98 165 1.03E-11 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01960 9c21a0720c86b0ef9a80825e64c57a26 406 Gene3D G3DSA:1.10.3720.10 93 190 1.4E-5 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01960 9c21a0720c86b0ef9a80825e64c57a26 406 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 97 160 1.1E-15 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_CH01960 9c21a0720c86b0ef9a80825e64c57a26 406 SUPERFAMILY SSF161098 191 387 3.6E-27 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01960 9c21a0720c86b0ef9a80825e64c57a26 406 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 239 401 5.8E-11 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00165 3c529e4d30c9d2540e4275c8b749ef56 240 Pfam PF00149 Calcineurin-like phosphoesterase 9 207 7.2E-11 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMJ96_PD00165 3c529e4d30c9d2540e4275c8b749ef56 240 PIRSF PIRSF008292 6 240 2.0E-86 T 12-10-2018 IPR016538 Uncharacterised conserved protein UCP008292 AMJ96_PD00165 3c529e4d30c9d2540e4275c8b749ef56 240 Gene3D G3DSA:3.60.21.10 1 237 5.3E-19 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like AMJ96_PD00165 3c529e4d30c9d2540e4275c8b749ef56 240 SUPERFAMILY SSF56300 9 239 1.15E-31 T 12-10-2018 AMJ96_CH02219 c39319321a8feede0a4a5c14a2ccf304 360 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 2 214 1.3E-49 T 12-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AMJ96_CH02219 c39319321a8feede0a4a5c14a2ccf304 360 SUPERFAMILY SSF69189 240 332 4.71E-17 T 12-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMJ96_CH02219 c39319321a8feede0a4a5c14a2ccf304 360 Gene3D G3DSA:2.60.410.10 240 329 4.2E-15 T 12-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMJ96_CH02219 c39319321a8feede0a4a5c14a2ccf304 360 Gene3D G3DSA:3.40.710.10 1 238 1.2E-60 T 12-10-2018 AMJ96_CH02219 c39319321a8feede0a4a5c14a2ccf304 360 SUPERFAMILY SSF56601 2 238 9.81E-59 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMJ96_CH02219 c39319321a8feede0a4a5c14a2ccf304 360 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 22 33 6.9E-11 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMJ96_CH02219 c39319321a8feede0a4a5c14a2ccf304 360 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 80 97 6.9E-11 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMJ96_CH02219 c39319321a8feede0a4a5c14a2ccf304 360 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 107 120 6.9E-11 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AMJ96_CH02219 c39319321a8feede0a4a5c14a2ccf304 360 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 240 329 1.4E-14 T 12-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMJ96_CH02219 c39319321a8feede0a4a5c14a2ccf304 360 SMART SM00936 240 330 2.9E-19 T 12-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AMJ96_PC00023 6b56f4f6c41e2ec2d377085b69169187 644 Gene3D G3DSA:1.20.1560.10 55 378 7.7E-64 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_PC00023 6b56f4f6c41e2ec2d377085b69169187 644 SUPERFAMILY SSF52540 388 634 1.45E-83 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00023 6b56f4f6c41e2ec2d377085b69169187 644 SUPERFAMILY SSF90123 65 377 5.23E-58 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_PC00023 6b56f4f6c41e2ec2d377085b69169187 644 ProSitePatterns PS00211 ABC transporters family signature. 536 550 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PC00023 6b56f4f6c41e2ec2d377085b69169187 644 Pfam PF00005 ABC transporter 415 564 1.3E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00023 6b56f4f6c41e2ec2d377085b69169187 644 SMART SM00382 424 616 2.1E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00023 6b56f4f6c41e2ec2d377085b69169187 644 Pfam PF00664 ABC transporter transmembrane region 75 351 1.8E-36 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_PC00023 6b56f4f6c41e2ec2d377085b69169187 644 Gene3D G3DSA:3.40.50.300 387 640 9.2E-84 T 12-10-2018 AMJ96_CH03248 ee48300eb6a7b88c029979a60a3b5a01 304 Pfam PF11871 Domain of unknown function (DUF3391) 2 104 2.9E-12 T 12-10-2018 IPR021812 Protein of unknown function DUF3391 AMJ96_CH03248 ee48300eb6a7b88c029979a60a3b5a01 304 Pfam PF13487 HD domain 189 250 1.4E-12 T 12-10-2018 AMJ96_CH03248 ee48300eb6a7b88c029979a60a3b5a01 304 Gene3D G3DSA:1.10.3210.10 27 299 1.5E-62 T 12-10-2018 AMJ96_CH03248 ee48300eb6a7b88c029979a60a3b5a01 304 SUPERFAMILY SSF109604 128 291 1.59E-26 T 12-10-2018 AMJ96_CH03248 ee48300eb6a7b88c029979a60a3b5a01 304 SMART SM00471 133 269 4.2E-7 T 12-10-2018 IPR003607 HD/PDEase domain AMJ96_CH00002 26fd9a74111ffccd5dd6c1565b281cea 199 Gene3D G3DSA:3.90.950.10 1 197 2.1E-49 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMJ96_CH00002 26fd9a74111ffccd5dd6c1565b281cea 199 Pfam PF02545 Maf-like protein 4 193 1.2E-38 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 AMJ96_CH00002 26fd9a74111ffccd5dd6c1565b281cea 199 PIRSF PIRSF006305 1 198 1.7E-38 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 AMJ96_CH00002 26fd9a74111ffccd5dd6c1565b281cea 199 SUPERFAMILY SSF52972 2 193 6.54E-48 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMJ96_CH00002 26fd9a74111ffccd5dd6c1565b281cea 199 Hamap MF_00528 Septum formation protein Maf [maf]. 4 198 26.493 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 AMJ96_PB00066 1ff6e534b36ac544497170582e181303 187 SUPERFAMILY SSF46785 4 49 3.9E-6 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PB00066 1ff6e534b36ac544497170582e181303 187 Pfam PF01609 Transposase DDE domain 66 155 4.6E-8 T 12-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 AMJ96_PB00066 1ff6e534b36ac544497170582e181303 187 Gene3D G3DSA:1.10.10.10 1 63 2.8E-7 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PB00066 1ff6e534b36ac544497170582e181303 187 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 47 2.4E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH04274 74aedf9b3af690ec3dfefb0feefc5405 112 Pfam PF11953 Domain of unknown function (DUF3470) 65 105 1.3E-19 T 12-10-2018 IPR022569 Ferredoxin, C-terminal AMJ96_CH04274 74aedf9b3af690ec3dfefb0feefc5405 112 Pfam PF00037 4Fe-4S binding domain 34 56 3.5E-7 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMJ96_CH04274 74aedf9b3af690ec3dfefb0feefc5405 112 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMJ96_CH04274 74aedf9b3af690ec3dfefb0feefc5405 112 SUPERFAMILY SSF54862 3 107 2.62E-25 T 12-10-2018 AMJ96_CH04274 74aedf9b3af690ec3dfefb0feefc5405 112 PRINTS PR00354 7Fe ferredoxin signature 19 29 5.4E-19 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMJ96_CH04274 74aedf9b3af690ec3dfefb0feefc5405 112 PRINTS PR00354 7Fe ferredoxin signature 35 52 5.4E-19 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMJ96_CH04274 74aedf9b3af690ec3dfefb0feefc5405 112 PRINTS PR00354 7Fe ferredoxin signature 9 19 5.4E-19 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 AMJ96_CH04274 74aedf9b3af690ec3dfefb0feefc5405 112 Gene3D G3DSA:3.30.70.20 2 105 5.5E-30 T 12-10-2018 AMJ96_PC00454 302577c857ec4c34e47f3d960ed053fb 104 Gene3D G3DSA:2.102.10.10 2 104 6.2E-31 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMJ96_PC00454 302577c857ec4c34e47f3d960ed053fb 104 Pfam PF00355 Rieske [2Fe-2S] domain 4 92 1.1E-19 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMJ96_PC00454 302577c857ec4c34e47f3d960ed053fb 104 TIGRFAM TIGR02377 MocE_fam_FeS: Rieske [2Fe-2S] domain protein, MocE subfamily 4 104 5.3E-54 T 12-10-2018 IPR012747 MocE Rieske [2Fe-2S] AMJ96_PC00454 302577c857ec4c34e47f3d960ed053fb 104 SUPERFAMILY SSF50022 4 104 1.7E-30 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMJ96_CH01568 d76446bc7250bfcf7bee8fb26a647f89 180 SUPERFAMILY SSF46955 12 80 2.01E-15 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily AMJ96_CH01568 d76446bc7250bfcf7bee8fb26a647f89 180 Pfam PF13411 MerR HTH family regulatory protein 12 79 7.3E-25 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH01568 d76446bc7250bfcf7bee8fb26a647f89 180 SMART SM00422 12 81 3.6E-6 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH01568 d76446bc7250bfcf7bee8fb26a647f89 180 Gene3D G3DSA:1.10.1660.10 6 80 4.9E-21 T 12-10-2018 AMJ96_CH01914 27658e1ebf8b130a3fa02a4b0aa3a716 493 SUPERFAMILY SSF75304 3 491 1.7E-152 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMJ96_CH01914 27658e1ebf8b130a3fa02a4b0aa3a716 493 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 12 485 91.678 T 12-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMJ96_CH01914 27658e1ebf8b130a3fa02a4b0aa3a716 493 ProSitePatterns PS00571 Amidases signature. 157 188 - T 12-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 AMJ96_CH01914 27658e1ebf8b130a3fa02a4b0aa3a716 493 Gene3D G3DSA:3.90.1300.10 3 491 4.6E-182 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMJ96_CH01914 27658e1ebf8b130a3fa02a4b0aa3a716 493 Pfam PF01425 Amidase 25 473 5.5E-144 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMJ96_CH01914 27658e1ebf8b130a3fa02a4b0aa3a716 493 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 13 483 2.6E-169 T 12-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMJ96_CH03125 ae8cf4a932ed24f7808d8f56bb905089 467 Pfam PF01554 MatE 257 422 3.8E-25 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMJ96_CH03125 ae8cf4a932ed24f7808d8f56bb905089 467 Pfam PF01554 MatE 31 189 2.1E-26 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMJ96_CH03125 ae8cf4a932ed24f7808d8f56bb905089 467 PIRSF PIRSF006603 22 464 4.8E-60 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMJ96_CH03125 ae8cf4a932ed24f7808d8f56bb905089 467 TIGRFAM TIGR00797 matE: MATE efflux family protein 31 436 4.9E-70 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMJ96_PD00420 a23924d1d68b4edf436fd94f6cb168d8 241 Pfam PF04854 Protein of unknown function, DUF624 39 108 2.6E-9 T 12-10-2018 IPR006938 Protein of unknown function DUF624 AMJ96_PB00253 cd182684c34f11e951d5f962a252a479 451 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 442 6.6E-145 T 12-10-2018 IPR010263 Type VI secretion protein, VC_A0114 AMJ96_PB00253 cd182684c34f11e951d5f962a252a479 451 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 443 2.6E-149 T 12-10-2018 IPR010263 Type VI secretion protein, VC_A0114 AMJ96_PC00357 9eb18a077876cc71a526afeb3c155a78 289 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 15 63 7.1E-10 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMJ96_PC00357 9eb18a077876cc71a526afeb3c155a78 289 SUPERFAMILY SSF161098 85 286 2.75E-27 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00357 9eb18a077876cc71a526afeb3c155a78 289 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 287 1.2E-29 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00357 9eb18a077876cc71a526afeb3c155a78 289 Gene3D G3DSA:1.10.3720.10 83 282 4.2E-22 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00761 fabd460817d5e215e6f3d9646673f53d 272 SUPERFAMILY SSF161098 4 258 1.03E-53 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00761 fabd460817d5e215e6f3d9646673f53d 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 254 1.9E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00761 fabd460817d5e215e6f3d9646673f53d 272 Gene3D G3DSA:1.10.3720.10 5 264 8.6E-50 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02751 d467554c3edd3ef712bc40142ebce570 157 PIRSF PIRSF021700 1 157 2.2E-64 T 12-10-2018 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase AMJ96_CH02751 d467554c3edd3ef712bc40142ebce570 157 Gene3D G3DSA:3.10.180.70 1 157 1.3E-59 T 12-10-2018 AMJ96_CH02751 d467554c3edd3ef712bc40142ebce570 157 SUPERFAMILY SSF54593 3 155 1.78E-46 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH02751 d467554c3edd3ef712bc40142ebce570 157 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 3 118 7.4E-48 T 12-10-2018 IPR028973 PhnB-like AMJ96_CH00237 f4f2ae95c42af5569df8d2b839129902 180 Gene3D G3DSA:2.60.120.10 1 178 2.5E-56 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH00237 f4f2ae95c42af5569df8d2b839129902 180 SUPERFAMILY SSF51182 1 173 2.16E-58 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH00237 f4f2ae95c42af5569df8d2b839129902 180 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 169 8.0E-48 T 12-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMJ96_CH00237 f4f2ae95c42af5569df8d2b839129902 180 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 173 2.0E-57 T 12-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AMJ96_PD00213 30be376d09341e49044750eef53b6ecc 107 Gene3D G3DSA:1.10.1660.10 4 99 2.9E-17 T 12-10-2018 AMJ96_PD00213 30be376d09341e49044750eef53b6ecc 107 SUPERFAMILY SSF46955 11 84 3.89E-6 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily AMJ96_PD00213 30be376d09341e49044750eef53b6ecc 107 Pfam PF13591 MerR HTH family regulatory protein 9 81 1.5E-10 T 12-10-2018 AMJ96_PC00457 932a7a4126c553d708df5d54097160f4 270 Pfam PF01261 Xylose isomerase-like TIM barrel 22 182 4.0E-24 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMJ96_PC00457 932a7a4126c553d708df5d54097160f4 270 Gene3D G3DSA:3.20.20.150 1 267 2.0E-61 T 12-10-2018 AMJ96_PC00457 932a7a4126c553d708df5d54097160f4 270 SUPERFAMILY SSF51658 3 266 1.44E-65 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_PC00457 932a7a4126c553d708df5d54097160f4 270 PIRSF PIRSF036778 1 270 3.2E-124 T 12-10-2018 IPR014621 Uncharacterised conserved protein UCP036778, sugar epimerase-type AMJ96_CH02243 673e2ab397c94ca3123fb760ba92d0d6 542 Pfam PF00117 Glutamine amidotransferase class-I 301 534 1.2E-52 T 12-10-2018 IPR017926 Glutamine amidotransferase AMJ96_CH02243 673e2ab397c94ca3123fb760ba92d0d6 542 SUPERFAMILY SSF52317 289 537 3.97E-79 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH02243 673e2ab397c94ca3123fb760ba92d0d6 542 TIGRFAM TIGR00337 PyrG: CTP synthase 2 534 1.6E-227 T 12-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AMJ96_CH02243 673e2ab397c94ca3123fb760ba92d0d6 542 Gene3D G3DSA:3.40.50.880 285 541 1.9E-97 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH02243 673e2ab397c94ca3123fb760ba92d0d6 542 Hamap MF_01227 CTP synthase [pyrG]. 2 539 49.561 T 12-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AMJ96_CH02243 673e2ab397c94ca3123fb760ba92d0d6 542 Gene3D G3DSA:3.40.50.300 1 284 2.3E-121 T 12-10-2018 AMJ96_CH02243 673e2ab397c94ca3123fb760ba92d0d6 542 Pfam PF06418 CTP synthase N-terminus 3 263 8.7E-119 T 12-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AMJ96_CH02243 673e2ab397c94ca3123fb760ba92d0d6 542 SUPERFAMILY SSF52540 1 266 3.44E-117 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02329 2b3cfb9a5967f4363c49d4a43a5a5998 164 Pfam PF01613 Flavin reductase like domain 16 164 1.4E-25 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AMJ96_CH02329 2b3cfb9a5967f4363c49d4a43a5a5998 164 Gene3D G3DSA:2.30.110.10 2 164 2.5E-39 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMJ96_CH02329 2b3cfb9a5967f4363c49d4a43a5a5998 164 SMART SM00903 16 163 8.7E-45 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 AMJ96_CH02329 2b3cfb9a5967f4363c49d4a43a5a5998 164 SUPERFAMILY SSF50475 7 164 7.85E-42 T 12-10-2018 AMJ96_PC00114 da40a38bc968ee3bf0b2e372d4bc65b9 296 SUPERFAMILY SSF161098 23 295 1.4E-74 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00114 da40a38bc968ee3bf0b2e372d4bc65b9 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 289 9.7E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00114 da40a38bc968ee3bf0b2e372d4bc65b9 296 Gene3D G3DSA:1.10.3720.10 23 283 1.4E-66 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03431 83f6b8c3a8e5f57836f2ccfa0bbd3f3a 523 SMART SM00710 90 112 35.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH03431 83f6b8c3a8e5f57836f2ccfa0bbd3f3a 523 SMART SM00710 238 264 61.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH03431 83f6b8c3a8e5f57836f2ccfa0bbd3f3a 523 SMART SM00710 113 139 6900.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH03431 83f6b8c3a8e5f57836f2ccfa0bbd3f3a 523 SMART SM00710 268 289 540.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH03431 83f6b8c3a8e5f57836f2ccfa0bbd3f3a 523 SMART SM00710 163 188 24.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH03431 83f6b8c3a8e5f57836f2ccfa0bbd3f3a 523 SMART SM00710 140 162 0.18 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH03431 83f6b8c3a8e5f57836f2ccfa0bbd3f3a 523 SMART SM00710 216 237 610.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH03431 83f6b8c3a8e5f57836f2ccfa0bbd3f3a 523 SMART SM00710 297 319 2100.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH03431 83f6b8c3a8e5f57836f2ccfa0bbd3f3a 523 SMART SM00722 198 356 11.0 T 12-10-2018 IPR006633 Carbohydrate-binding/sugar hydrolysis domain AMJ96_CH03431 83f6b8c3a8e5f57836f2ccfa0bbd3f3a 523 SMART SM00722 43 182 0.0025 T 12-10-2018 IPR006633 Carbohydrate-binding/sugar hydrolysis domain AMJ96_CH03431 83f6b8c3a8e5f57836f2ccfa0bbd3f3a 523 Gene3D G3DSA:2.160.20.10 3 383 4.5E-33 T 12-10-2018 IPR012334 Pectin lyase fold AMJ96_CH03431 83f6b8c3a8e5f57836f2ccfa0bbd3f3a 523 SUPERFAMILY SSF51126 22 360 5.72E-45 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor AMJ96_CH03431 83f6b8c3a8e5f57836f2ccfa0bbd3f3a 523 Pfam PF13229 Right handed beta helix region 156 329 2.1E-15 T 12-10-2018 IPR039448 Right handed beta helix domain AMJ96_PD00276 b0e3ab7b8883d4006087926353bdb2c8 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 50 73 2.7E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PD00276 b0e3ab7b8883d4006087926353bdb2c8 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 42 2.7E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PD00276 b0e3ab7b8883d4006087926353bdb2c8 215 SUPERFAMILY SSF46689 16 87 1.05E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00276 b0e3ab7b8883d4006087926353bdb2c8 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 29 75 3.9E-15 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PD00276 b0e3ab7b8883d4006087926353bdb2c8 215 SUPERFAMILY SSF48498 107 211 1.89E-5 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_PD00276 b0e3ab7b8883d4006087926353bdb2c8 215 Gene3D G3DSA:1.10.357.10 8 210 1.2E-45 T 12-10-2018 AMJ96_CH00506 1c28f951a55c96f3bb29ca69c52df68c 409 Gene3D G3DSA:1.10.10.10 101 190 4.6E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00506 1c28f951a55c96f3bb29ca69c52df68c 409 Gene3D G3DSA:3.40.190.10 268 370 1.0E-12 T 12-10-2018 AMJ96_CH00506 1c28f951a55c96f3bb29ca69c52df68c 409 SUPERFAMILY SSF53850 202 396 3.26E-16 T 12-10-2018 AMJ96_CH00506 1c28f951a55c96f3bb29ca69c52df68c 409 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 138 149 1.9E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH00506 1c28f951a55c96f3bb29ca69c52df68c 409 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 117 128 1.9E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH00506 1c28f951a55c96f3bb29ca69c52df68c 409 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 128 138 1.9E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH00506 1c28f951a55c96f3bb29ca69c52df68c 409 Gene3D G3DSA:3.40.190.10 207 377 1.0E-12 T 12-10-2018 AMJ96_CH00506 1c28f951a55c96f3bb29ca69c52df68c 409 SUPERFAMILY SSF46785 99 181 9.99E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00506 1c28f951a55c96f3bb29ca69c52df68c 409 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 105 161 1.4E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH00506 1c28f951a55c96f3bb29ca69c52df68c 409 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 54 9.2E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH00506 1c28f951a55c96f3bb29ca69c52df68c 409 Gene3D G3DSA:1.10.10.10 2 75 8.8E-7 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00506 1c28f951a55c96f3bb29ca69c52df68c 409 Pfam PF03466 LysR substrate binding domain 203 385 7.7E-15 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH02361 4b099b40676d05f009dadd0aa9fba2ff 260 Gene3D G3DSA:3.90.850.10 1 260 1.3E-71 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMJ96_CH02361 4b099b40676d05f009dadd0aa9fba2ff 260 SUPERFAMILY SSF56529 3 260 1.53E-69 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMJ96_CH02361 4b099b40676d05f009dadd0aa9fba2ff 260 TIGRFAM TIGR02312 HpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1 260 3.3E-107 T 12-10-2018 IPR012690 2-oxo-hepta-4-ene-1,7-dioic acid hydratase GO:0018817|GO:0019439 AMJ96_CH02088 1990a2491e0696fa285d72788125a38a 138 Pfam PF03928 Haem-degrading 2 128 2.2E-30 T 12-10-2018 IPR005624 Haem-degrading AMJ96_CH02088 1990a2491e0696fa285d72788125a38a 138 SUPERFAMILY SSF143744 2 131 1.28E-34 T 12-10-2018 IPR038084 GlcG-like domain superfamily AMJ96_CH02088 1990a2491e0696fa285d72788125a38a 138 Gene3D G3DSA:3.30.450.150 1 135 8.9E-42 T 12-10-2018 IPR038084 GlcG-like domain superfamily AMJ96_CH02109 207d3bbd26348713a41cf64b0d53b0a2 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 71 7.2E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02109 207d3bbd26348713a41cf64b0d53b0a2 234 Gene3D G3DSA:1.10.10.10 8 83 1.7E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02109 207d3bbd26348713a41cf64b0d53b0a2 234 SUPERFAMILY SSF46785 10 93 1.77E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02109 207d3bbd26348713a41cf64b0d53b0a2 234 SMART SM00895 101 221 0.0035 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH02109 207d3bbd26348713a41cf64b0d53b0a2 234 Gene3D G3DSA:1.20.120.530 98 230 1.8E-10 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH02109 207d3bbd26348713a41cf64b0d53b0a2 234 SUPERFAMILY SSF48008 108 228 9.68E-9 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH02109 207d3bbd26348713a41cf64b0d53b0a2 234 SMART SM00345 17 78 5.7E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02109 207d3bbd26348713a41cf64b0d53b0a2 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 5.3E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02109 207d3bbd26348713a41cf64b0d53b0a2 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 5.3E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02109 207d3bbd26348713a41cf64b0d53b0a2 234 Pfam PF07729 FCD domain 111 218 1.5E-9 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH03583 655e5f669f975a7cb5e74a91b394acd4 157 Gene3D G3DSA:2.60.120.10 5 147 3.0E-21 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH03583 655e5f669f975a7cb5e74a91b394acd4 157 Pfam PF07883 Cupin domain 55 125 4.5E-11 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_CH03583 655e5f669f975a7cb5e74a91b394acd4 157 SUPERFAMILY SSF51182 8 137 1.18E-26 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH01364 6a2128527e4805c88f64eece2ee208ee 119 SUPERFAMILY SSF54909 1 114 1.47E-28 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH01364 6a2128527e4805c88f64eece2ee208ee 119 Gene3D G3DSA:3.30.70.1060 1 115 3.5E-33 T 12-10-2018 AMJ96_CH01364 6a2128527e4805c88f64eece2ee208ee 119 Pfam PF03795 YCII-related domain 1 113 7.1E-22 T 12-10-2018 IPR005545 YCII-related AMJ96_PA00133 b9322378695d7e3c9de541a79ecb16af 241 Gene3D G3DSA:1.10.10.10 148 230 5.5E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PA00133 b9322378695d7e3c9de541a79ecb16af 241 SUPERFAMILY SSF51206 37 145 1.31E-20 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like AMJ96_PA00133 b9322378695d7e3c9de541a79ecb16af 241 Pfam PF00027 Cyclic nucleotide-binding domain 37 117 1.9E-12 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_PA00133 b9322378695d7e3c9de541a79ecb16af 241 SMART SM00419 167 216 2.1E-15 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00133 b9322378695d7e3c9de541a79ecb16af 241 Pfam PF13545 Crp-like helix-turn-helix domain 151 223 5.6E-18 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00133 b9322378695d7e3c9de541a79ecb16af 241 SUPERFAMILY SSF46785 148 231 2.34E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PA00133 b9322378695d7e3c9de541a79ecb16af 241 Gene3D G3DSA:2.60.120.10 33 147 1.7E-28 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PA00133 b9322378695d7e3c9de541a79ecb16af 241 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 173 189 4.2E-10 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00133 b9322378695d7e3c9de541a79ecb16af 241 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 189 204 4.2E-10 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00133 b9322378695d7e3c9de541a79ecb16af 241 SMART SM00100 16 134 9.7E-10 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain AMJ96_PA00131 a7740c1d85e96346df4cf6cc3fde2f71 244 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 8 239 2.0E-126 T 12-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO AMJ96_PA00131 a7740c1d85e96346df4cf6cc3fde2f71 244 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 8 232 1.9E-97 T 12-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO AMJ96_PA00131 a7740c1d85e96346df4cf6cc3fde2f71 244 SUPERFAMILY SSF46626 22 228 1.73E-25 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_PA00131 a7740c1d85e96346df4cf6cc3fde2f71 244 Gene3D G3DSA:1.10.760.10 45 236 5.7E-66 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_CH03584 0a66496ceb631878bd6379f2d313b4b0 369 SUPERFAMILY SSF50331 236 356 3.4E-22 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH03584 0a66496ceb631878bd6379f2d313b4b0 369 Pfam PF00005 ABC transporter 20 161 1.3E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03584 0a66496ceb631878bd6379f2d313b4b0 369 Gene3D G3DSA:2.40.50.940 222 349 2.2E-26 T 12-10-2018 AMJ96_CH03584 0a66496ceb631878bd6379f2d313b4b0 369 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03584 0a66496ceb631878bd6379f2d313b4b0 369 SUPERFAMILY SSF52540 4 242 7.32E-88 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03584 0a66496ceb631878bd6379f2d313b4b0 369 Gene3D G3DSA:2.40.50.140 284 340 2.2E-26 T 12-10-2018 AMJ96_CH03584 0a66496ceb631878bd6379f2d313b4b0 369 Gene3D G3DSA:3.40.50.300 3 221 1.2E-69 T 12-10-2018 AMJ96_CH03584 0a66496ceb631878bd6379f2d313b4b0 369 SMART SM00382 28 219 3.6E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01457 cf59815a8da7f9b3c94e277bd9054413 232 Hamap MF_00664 Phosphatidylserine decarboxylase proenzyme [psd]. 13 221 38.62 T 12-10-2018 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 AMJ96_CH01457 cf59815a8da7f9b3c94e277bd9054413 232 Pfam PF02666 Phosphatidylserine decarboxylase 46 217 1.6E-29 T 12-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 AMJ96_CH01457 cf59815a8da7f9b3c94e277bd9054413 232 TIGRFAM TIGR00164 PS_decarb_rel: phosphatidylserine decarboxylase homolog 26 222 3.3E-61 T 12-10-2018 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 AMJ96_PD00222 48ed7bd20c4debbaffa8c170cd99e535 275 SUPERFAMILY SSF161098 11 270 7.03E-51 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00222 48ed7bd20c4debbaffa8c170cd99e535 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 262 1.1E-12 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00222 48ed7bd20c4debbaffa8c170cd99e535 275 Gene3D G3DSA:1.10.3720.10 9 262 5.5E-47 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01921 406bf2cf8ba9aaa1e88328de1973da73 169 Pfam PF13673 Acetyltransferase (GNAT) domain 41 131 1.0E-10 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH01921 406bf2cf8ba9aaa1e88328de1973da73 169 SUPERFAMILY SSF55729 2 131 1.28E-19 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH01921 406bf2cf8ba9aaa1e88328de1973da73 169 Gene3D G3DSA:3.40.630.30 1 156 9.4E-20 T 12-10-2018 AMJ96_CH01827 c7435e330c2dd2ce7930afcf36a0a280 345 Gene3D G3DSA:3.40.50.1100 8 312 8.0E-113 T 12-10-2018 AMJ96_CH01827 c7435e330c2dd2ce7930afcf36a0a280 345 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 33 51 - T 12-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 AMJ96_CH01827 c7435e330c2dd2ce7930afcf36a0a280 345 SUPERFAMILY SSF53686 2 326 1.11E-90 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMJ96_CH01827 c7435e330c2dd2ce7930afcf36a0a280 345 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 306 2.0E-65 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMJ96_CH01827 c7435e330c2dd2ce7930afcf36a0a280 345 Gene3D G3DSA:3.40.50.1100 38 151 8.0E-113 T 12-10-2018 AMJ96_PA00249 9e0abe30c81f635de6dc0f6380b2ba99 278 SUPERFAMILY SSF53850 4 254 1.78E-57 T 12-10-2018 AMJ96_PA00249 9e0abe30c81f635de6dc0f6380b2ba99 278 Gene3D G3DSA:3.40.190.10 32 251 8.7E-54 T 12-10-2018 AMJ96_PA00249 9e0abe30c81f635de6dc0f6380b2ba99 278 SMART SM00062 34 255 1.7E-55 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PA00249 9e0abe30c81f635de6dc0f6380b2ba99 278 SMART SM00079 34 254 0.0099 T 12-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AMJ96_PA00249 9e0abe30c81f635de6dc0f6380b2ba99 278 Gene3D G3DSA:3.40.190.10 119 217 8.7E-54 T 12-10-2018 AMJ96_PA00249 9e0abe30c81f635de6dc0f6380b2ba99 278 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 253 4.3E-51 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH01879 dece2ac9be36f1797e04ff79cb55a703 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 2.2E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01879 dece2ac9be36f1797e04ff79cb55a703 302 SUPERFAMILY SSF46785 6 89 1.12E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01879 dece2ac9be36f1797e04ff79cb55a703 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.2E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01879 dece2ac9be36f1797e04ff79cb55a703 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.2E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01879 dece2ac9be36f1797e04ff79cb55a703 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.2E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01879 dece2ac9be36f1797e04ff79cb55a703 302 Gene3D G3DSA:3.40.190.290 96 278 3.0E-22 T 12-10-2018 AMJ96_CH01879 dece2ac9be36f1797e04ff79cb55a703 302 Gene3D G3DSA:1.10.10.10 5 88 1.3E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01879 dece2ac9be36f1797e04ff79cb55a703 302 SUPERFAMILY SSF53850 92 294 2.71E-27 T 12-10-2018 AMJ96_CH01879 dece2ac9be36f1797e04ff79cb55a703 302 Pfam PF03466 LysR substrate binding domain 91 294 1.2E-23 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH00473 a583693c9c63cb627dc43f23b948960d 120 SUPERFAMILY SSF54427 1 113 2.09E-23 T 12-10-2018 IPR032710 NTF2-like domain superfamily AMJ96_CH00473 a583693c9c63cb627dc43f23b948960d 120 Pfam PF12680 SnoaL-like domain 23 104 1.6E-10 T 12-10-2018 IPR037401 SnoaL-like domain AMJ96_CH00473 a583693c9c63cb627dc43f23b948960d 120 Gene3D G3DSA:3.10.450.50 2 114 1.2E-22 T 12-10-2018 AMJ96_CH01050 2c7aa6dc941ee40d887b30455a563793 991 Gene3D G3DSA:3.40.50.720 650 865 1.6E-35 T 12-10-2018 AMJ96_CH01050 2c7aa6dc941ee40d887b30455a563793 991 SUPERFAMILY SSF53383 84 488 1.1E-9 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH01050 2c7aa6dc941ee40d887b30455a563793 991 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 677 827 2.2E-28 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMJ96_CH01050 2c7aa6dc941ee40d887b30455a563793 991 Gene3D G3DSA:3.40.640.10 74 320 4.2E-18 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH01050 2c7aa6dc941ee40d887b30455a563793 991 SUPERFAMILY SSF51735 655 828 3.11E-28 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02470 8ca61ebb7fed045d3f038a6d7028c4b7 297 Gene3D G3DSA:1.10.10.10 5 91 9.5E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02470 8ca61ebb7fed045d3f038a6d7028c4b7 297 Pfam PF03466 LysR substrate binding domain 90 294 2.6E-41 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH02470 8ca61ebb7fed045d3f038a6d7028c4b7 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 4.0E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02470 8ca61ebb7fed045d3f038a6d7028c4b7 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 3.6E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02470 8ca61ebb7fed045d3f038a6d7028c4b7 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 3.6E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02470 8ca61ebb7fed045d3f038a6d7028c4b7 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 3.6E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02470 8ca61ebb7fed045d3f038a6d7028c4b7 297 SUPERFAMILY SSF53850 91 294 1.77E-42 T 12-10-2018 AMJ96_CH02470 8ca61ebb7fed045d3f038a6d7028c4b7 297 Gene3D G3DSA:3.40.190.290 93 295 9.4E-52 T 12-10-2018 AMJ96_CH02470 8ca61ebb7fed045d3f038a6d7028c4b7 297 SUPERFAMILY SSF46785 3 83 6.77E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03676 065c76b5055a39b55fd9d2a4bdd261fe 523 Gene3D G3DSA:3.20.20.450 266 521 9.6E-89 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH03676 065c76b5055a39b55fd9d2a4bdd261fe 523 Pfam PF00990 Diguanylate cyclase, GGDEF domain 91 250 5.2E-32 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH03676 065c76b5055a39b55fd9d2a4bdd261fe 523 SUPERFAMILY SSF141868 270 515 2.09E-82 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH03676 065c76b5055a39b55fd9d2a4bdd261fe 523 SMART SM00052 265 507 2.7E-100 T 12-10-2018 IPR001633 EAL domain AMJ96_CH03676 065c76b5055a39b55fd9d2a4bdd261fe 523 Gene3D G3DSA:3.30.70.270 90 261 1.8E-39 T 12-10-2018 AMJ96_CH03676 065c76b5055a39b55fd9d2a4bdd261fe 523 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 89 254 1.8E-29 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH03676 065c76b5055a39b55fd9d2a4bdd261fe 523 Pfam PF00563 EAL domain 272 501 1.2E-68 T 12-10-2018 IPR001633 EAL domain AMJ96_CH03676 065c76b5055a39b55fd9d2a4bdd261fe 523 SMART SM00267 80 255 9.9E-31 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH03676 065c76b5055a39b55fd9d2a4bdd261fe 523 SUPERFAMILY SSF55073 96 256 3.45E-34 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03653 2447dff968960cde7c1c27b0672cce43 341 SUPERFAMILY SSF52540 6 243 7.4E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03653 2447dff968960cde7c1c27b0672cce43 341 Pfam PF00005 ABC transporter 22 163 1.1E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03653 2447dff968960cde7c1c27b0672cce43 341 SMART SM00382 30 213 1.5E-19 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03653 2447dff968960cde7c1c27b0672cce43 341 Gene3D G3DSA:3.40.50.300 3 239 2.0E-79 T 12-10-2018 AMJ96_CH03653 2447dff968960cde7c1c27b0672cce43 341 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00124 043ce3ab0a772795837e0c62fd79e3b8 395 SUPERFAMILY SSF51658 1 388 8.34E-65 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_PD00124 043ce3ab0a772795837e0c62fd79e3b8 395 TIGRFAM TIGR00695 uxuA: mannonate dehydratase 1 390 1.6E-133 T 12-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AMJ96_PD00124 043ce3ab0a772795837e0c62fd79e3b8 395 PIRSF PIRSF016049 1 394 2.1E-154 T 12-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AMJ96_PD00124 043ce3ab0a772795837e0c62fd79e3b8 395 Pfam PF03786 D-mannonate dehydratase (UxuA) 1 390 4.0E-113 T 12-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AMJ96_PD00124 043ce3ab0a772795837e0c62fd79e3b8 395 Hamap MF_00106 Mannonate dehydratase [uxuA]. 1 395 174.135 T 12-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AMJ96_CH02144 a7c22228bb453a41fe7acc88cc8cdc51 320 Gene3D G3DSA:3.40.50.2300 129 270 7.1E-107 T 12-10-2018 AMJ96_CH02144 a7c22228bb453a41fe7acc88cc8cdc51 320 SUPERFAMILY SSF53822 26 305 1.26E-73 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH02144 a7c22228bb453a41fe7acc88cc8cdc51 320 Pfam PF13407 Periplasmic binding protein domain 32 288 2.2E-47 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_CH02144 a7c22228bb453a41fe7acc88cc8cdc51 320 Gene3D G3DSA:3.40.50.2300 29 287 7.1E-107 T 12-10-2018 AMJ96_CH00107 3e5e53b8fdf613c6d0e2c923e928df49 211 Pfam PF03458 UPF0126 domain 6 80 9.9E-21 T 12-10-2018 IPR005115 Uncharacterised domain UPF0126 AMJ96_CH00107 3e5e53b8fdf613c6d0e2c923e928df49 211 Pfam PF03458 UPF0126 domain 92 164 3.2E-18 T 12-10-2018 IPR005115 Uncharacterised domain UPF0126 AMJ96_CH00530 84f59c9cbf1d3b37469d0db27ec2d07a 227 Pfam PF00072 Response regulator receiver domain 5 117 6.4E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00530 84f59c9cbf1d3b37469d0db27ec2d07a 227 Gene3D G3DSA:1.10.10.10 128 227 2.8E-35 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00530 84f59c9cbf1d3b37469d0db27ec2d07a 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 224 9.2E-27 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH00530 84f59c9cbf1d3b37469d0db27ec2d07a 227 SUPERFAMILY SSF52172 3 125 3.84E-39 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH00530 84f59c9cbf1d3b37469d0db27ec2d07a 227 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 3 225 2.0E-103 T 12-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 AMJ96_CH00530 84f59c9cbf1d3b37469d0db27ec2d07a 227 Gene3D G3DSA:3.40.50.2300 2 127 1.2E-35 T 12-10-2018 AMJ96_CH00530 84f59c9cbf1d3b37469d0db27ec2d07a 227 SMART SM00862 150 225 1.2E-25 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH00530 84f59c9cbf1d3b37469d0db27ec2d07a 227 SMART SM00448 3 116 6.7E-43 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00530 84f59c9cbf1d3b37469d0db27ec2d07a 227 SUPERFAMILY SSF46894 128 226 1.18E-31 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH00470 1304ed0c028437a6f648e75daa065bbc 345 SUPERFAMILY SSF54506 1 332 5.42E-97 T 12-10-2018 AMJ96_CH00470 1304ed0c028437a6f648e75daa065bbc 345 Gene3D G3DSA:3.10.310.10 148 311 2.5E-119 T 12-10-2018 AMJ96_CH00470 1304ed0c028437a6f648e75daa065bbc 345 Pfam PF05544 Proline racemase 10 332 2.5E-121 T 12-10-2018 IPR008794 Proline racemase family AMJ96_CH00470 1304ed0c028437a6f648e75daa065bbc 345 Gene3D G3DSA:3.10.310.10 6 334 2.5E-119 T 12-10-2018 AMJ96_CH00470 1304ed0c028437a6f648e75daa065bbc 345 PIRSF PIRSF029792 1 335 1.2E-118 T 12-10-2018 IPR008794 Proline racemase family AMJ96_CH01743 daa92924a352dc361e2b1fa19d38310e 140 TIGRFAM TIGR00059 L17: ribosomal protein bL17 8 117 3.4E-44 T 12-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01743 daa92924a352dc361e2b1fa19d38310e 140 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 12-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01743 daa92924a352dc361e2b1fa19d38310e 140 Pfam PF01196 Ribosomal protein L17 20 116 2.0E-37 T 12-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01743 daa92924a352dc361e2b1fa19d38310e 140 SUPERFAMILY SSF64263 1 119 1.22E-50 T 12-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01743 daa92924a352dc361e2b1fa19d38310e 140 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 26.642 T 12-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01743 daa92924a352dc361e2b1fa19d38310e 140 Gene3D G3DSA:3.90.1030.10 1 117 3.6E-50 T 12-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_PD00264 e610e03a6c6dcd59dab2be485cf2fc51 279 Gene3D G3DSA:3.40.190.10 125 228 1.5E-87 T 12-10-2018 AMJ96_PD00264 e610e03a6c6dcd59dab2be485cf2fc51 279 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 40 274 4.6E-73 T 12-10-2018 IPR004872 Lipoprotein NlpA family AMJ96_PD00264 e610e03a6c6dcd59dab2be485cf2fc51 279 Pfam PF03180 NLPA lipoprotein 44 277 2.1E-91 T 12-10-2018 IPR004872 Lipoprotein NlpA family AMJ96_PD00264 e610e03a6c6dcd59dab2be485cf2fc51 279 Gene3D G3DSA:3.40.190.10 45 273 1.5E-87 T 12-10-2018 AMJ96_PD00264 e610e03a6c6dcd59dab2be485cf2fc51 279 SUPERFAMILY SSF53850 43 276 1.99E-75 T 12-10-2018 AMJ96_PD00264 e610e03a6c6dcd59dab2be485cf2fc51 279 PIRSF PIRSF002854 4 279 2.9E-100 T 12-10-2018 IPR004872 Lipoprotein NlpA family AMJ96_CH02824 2a4712a1a1b86363331dd91707b1da05 391 Gene3D G3DSA:3.30.420.40 193 342 3.2E-73 T 12-10-2018 AMJ96_CH02824 2a4712a1a1b86363331dd91707b1da05 391 Gene3D G3DSA:1.10.10.10 1 66 6.4E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02824 2a4712a1a1b86363331dd91707b1da05 391 Gene3D G3DSA:3.30.420.40 79 192 3.2E-73 T 12-10-2018 AMJ96_CH02824 2a4712a1a1b86363331dd91707b1da05 391 SUPERFAMILY SSF46785 1 61 5.07E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02824 2a4712a1a1b86363331dd91707b1da05 391 Pfam PF00480 ROK family 106 365 5.3E-48 T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AMJ96_CH02824 2a4712a1a1b86363331dd91707b1da05 391 SUPERFAMILY SSF53067 72 366 1.43E-48 T 12-10-2018 AMJ96_CH02824 2a4712a1a1b86363331dd91707b1da05 391 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 46 5.2E-7 T 12-10-2018 AMJ96_CH02924 8ac5ba626853afcd1fb3009492990b69 421 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 322 1.1E-52 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_CH02924 8ac5ba626853afcd1fb3009492990b69 421 SUPERFAMILY SSF51905 157 336 7.17E-22 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02924 8ac5ba626853afcd1fb3009492990b69 421 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 294 301 8.2E-7 T 12-10-2018 AMJ96_CH02924 8ac5ba626853afcd1fb3009492990b69 421 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 158 183 8.2E-7 T 12-10-2018 AMJ96_CH02924 8ac5ba626853afcd1fb3009492990b69 421 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 8.2E-7 T 12-10-2018 AMJ96_CH02924 8ac5ba626853afcd1fb3009492990b69 421 Gene3D G3DSA:3.50.50.100 1 396 8.8E-118 T 12-10-2018 AMJ96_CH02924 8ac5ba626853afcd1fb3009492990b69 421 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 279 301 5.9E-10 T 12-10-2018 AMJ96_CH02924 8ac5ba626853afcd1fb3009492990b69 421 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 158 176 5.9E-10 T 12-10-2018 AMJ96_CH02924 8ac5ba626853afcd1fb3009492990b69 421 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 98 116 5.9E-10 T 12-10-2018 AMJ96_CH02924 8ac5ba626853afcd1fb3009492990b69 421 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 5.9E-10 T 12-10-2018 AMJ96_CH02924 8ac5ba626853afcd1fb3009492990b69 421 SUPERFAMILY SSF51905 3 210 6.29E-33 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PB00061 1fb2b06ac1659995b9314ed0f4af7e83 587 Gene3D G3DSA:2.60.40.420 255 443 1.1E-13 T 12-10-2018 IPR008972 Cupredoxin AMJ96_PB00061 1fb2b06ac1659995b9314ed0f4af7e83 587 Pfam PF07732 Multicopper oxidase 123 239 4.8E-11 T 12-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 AMJ96_PB00061 1fb2b06ac1659995b9314ed0f4af7e83 587 Gene3D G3DSA:2.60.40.420 516 570 5.9E-7 T 12-10-2018 IPR008972 Cupredoxin AMJ96_PB00061 1fb2b06ac1659995b9314ed0f4af7e83 587 SUPERFAMILY SSF49503 258 422 9.77E-10 T 12-10-2018 IPR008972 Cupredoxin AMJ96_PB00061 1fb2b06ac1659995b9314ed0f4af7e83 587 SUPERFAMILY SSF49503 126 241 5.45E-21 T 12-10-2018 IPR008972 Cupredoxin AMJ96_PB00061 1fb2b06ac1659995b9314ed0f4af7e83 587 Gene3D G3DSA:2.60.40.420 92 236 3.1E-29 T 12-10-2018 IPR008972 Cupredoxin AMJ96_PA00122 74cd449ea51638f72eab356db96c3123 290 SUPERFAMILY SSF48452 143 254 1.16E-11 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_PA00122 74cd449ea51638f72eab356db96c3123 290 Gene3D G3DSA:1.25.40.10 135 266 2.2E-19 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_PA00122 74cd449ea51638f72eab356db96c3123 290 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 3 116 7.9E-23 T 12-10-2018 IPR017560 Cytochrome c-type biogenesis protein CcmI AMJ96_CH01029 ad96fa2582b43bb200f953234be44ea9 226 SUPERFAMILY SSF52833 8 205 5.62E-22 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH01029 ad96fa2582b43bb200f953234be44ea9 226 Pfam PF00578 AhpC/TSA family 11 195 5.4E-18 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AMJ96_CH01339 4b28b25c911692ade87ee1509ac1693d 312 Pfam PF00892 EamA-like transporter family 10 143 6.1E-11 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH01339 4b28b25c911692ade87ee1509ac1693d 312 Pfam PF00892 EamA-like transporter family 162 291 1.8E-9 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH01339 4b28b25c911692ade87ee1509ac1693d 312 SUPERFAMILY SSF103481 50 146 6.02E-10 T 12-10-2018 AMJ96_CH01339 4b28b25c911692ade87ee1509ac1693d 312 SUPERFAMILY SSF103481 195 295 1.44E-13 T 12-10-2018 AMJ96_PC00079 16eb30416a4d6a3b989aab85ae01a799 300 Gene3D G3DSA:3.90.180.10 9 297 2.7E-55 T 12-10-2018 AMJ96_PC00079 16eb30416a4d6a3b989aab85ae01a799 300 Gene3D G3DSA:3.40.50.720 128 250 2.7E-55 T 12-10-2018 AMJ96_PC00079 16eb30416a4d6a3b989aab85ae01a799 300 SUPERFAMILY SSF51735 117 275 3.57E-17 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00079 16eb30416a4d6a3b989aab85ae01a799 300 SUPERFAMILY SSF50129 1 151 5.93E-36 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_PC00079 16eb30416a4d6a3b989aab85ae01a799 300 SMART SM00829 10 298 8.3E-9 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_PC00079 16eb30416a4d6a3b989aab85ae01a799 300 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 94 4.6E-11 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_PD00227 0a126036a89347c9bedb690903a45caf 302 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 291 2.5E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00227 0a126036a89347c9bedb690903a45caf 302 SUPERFAMILY SSF161098 56 289 4.45E-53 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00227 0a126036a89347c9bedb690903a45caf 302 Gene3D G3DSA:1.10.3720.10 54 301 7.0E-63 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01213 9e498959f6582bb511cca0b9e3e56ed1 78 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 56 2.4E-20 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01213 9e498959f6582bb511cca0b9e3e56ed1 78 Gene3D G3DSA:1.20.5.1150 14 52 7.7E-9 T 12-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01213 9e498959f6582bb511cca0b9e3e56ed1 78 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 10 55 12.223 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01213 9e498959f6582bb511cca0b9e3e56ed1 78 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 13 51 2.0E-12 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01213 9e498959f6582bb511cca0b9e3e56ed1 78 Pfam PF01165 Ribosomal protein S21 2 55 1.0E-18 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH03294 91425d75fa763fc0c214212fb1cca373 118 ProSitePatterns PS00769 Transthyretin signature 2. 101 113 - T 12-10-2018 IPR023419 Transthyretin, conserved site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMJ96_CH03294 91425d75fa763fc0c214212fb1cca373 118 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 2 118 2.9E-37 T 12-10-2018 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 AMJ96_CH03294 91425d75fa763fc0c214212fb1cca373 118 SUPERFAMILY SSF49472 1 118 7.98E-40 T 12-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMJ96_CH03294 91425d75fa763fc0c214212fb1cca373 118 ProSitePatterns PS00768 Transthyretin signature 1. 7 22 - T 12-10-2018 IPR023418 Transthyretin, thyroxine binding site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMJ96_CH03294 91425d75fa763fc0c214212fb1cca373 118 PRINTS PR00189 Transthyretin signature 3 23 1.2E-6 T 12-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMJ96_CH03294 91425d75fa763fc0c214212fb1cca373 118 PRINTS PR00189 Transthyretin signature 96 118 1.2E-6 T 12-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMJ96_CH03294 91425d75fa763fc0c214212fb1cca373 118 Pfam PF00576 HIUase/Transthyretin family 4 117 1.7E-32 T 12-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMJ96_CH03294 91425d75fa763fc0c214212fb1cca373 118 Gene3D G3DSA:2.60.40.180 1 118 2.3E-37 T 12-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 AMJ96_CH00932 c74b706caa1dfd7d10e664d1ad8b7abd 248 SUPERFAMILY SSF55174 6 57 1.62E-11 T 12-10-2018 AMJ96_CH00932 c74b706caa1dfd7d10e664d1ad8b7abd 248 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 8 240 1.5E-56 T 12-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 AMJ96_CH00932 c74b706caa1dfd7d10e664d1ad8b7abd 248 SUPERFAMILY SSF53335 61 245 6.31E-22 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH00932 c74b706caa1dfd7d10e664d1ad8b7abd 248 Gene3D G3DSA:3.40.50.150 66 247 1.7E-64 T 12-10-2018 AMJ96_CH00932 c74b706caa1dfd7d10e664d1ad8b7abd 248 Pfam PF01479 S4 domain 7 45 1.5E-8 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH00932 c74b706caa1dfd7d10e664d1ad8b7abd 248 Gene3D G3DSA:3.10.290.10 3 65 6.6E-19 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 AMJ96_CH00932 c74b706caa1dfd7d10e664d1ad8b7abd 248 Pfam PF01728 FtsJ-like methyltransferase 63 244 1.0E-21 T 12-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 AMJ96_CH00932 c74b706caa1dfd7d10e664d1ad8b7abd 248 SMART SM00363 7 72 3.2E-8 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH00932 c74b706caa1dfd7d10e664d1ad8b7abd 248 PIRSF PIRSF005578 2 248 3.2E-86 T 12-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 AMJ96_CH00976 c21fa78bf99b1f658e2062210a6af32e 202 SUPERFAMILY SSF110111 58 184 9.02E-49 T 12-10-2018 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00976 c21fa78bf99b1f658e2062210a6af32e 202 Pfam PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 36 180 1.3E-55 T 12-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00976 c21fa78bf99b1f658e2062210a6af32e 202 Hamap MF_00155 Cytochrome c oxidase assembly protein CtaG [ctaG]. 1 187 43.683 T 12-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00976 c21fa78bf99b1f658e2062210a6af32e 202 Gene3D G3DSA:2.60.370.10 56 197 3.1E-54 T 12-10-2018 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00976 c21fa78bf99b1f658e2062210a6af32e 202 PIRSF PIRSF005413 2 197 1.7E-73 T 12-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02963 08130f4218769ed9a3c10f4a6cf12b9d 364 SMART SM00244 78 247 1.9E-25 T 12-10-2018 IPR001107 Band 7 domain AMJ96_CH02963 08130f4218769ed9a3c10f4a6cf12b9d 364 TIGRFAM TIGR01933 hflK: HflK protein 80 347 4.6E-82 T 12-10-2018 IPR010201 HflK GO:0016021 AMJ96_CH02963 08130f4218769ed9a3c10f4a6cf12b9d 364 Gene3D G3DSA:3.30.479.30 119 238 3.5E-18 T 12-10-2018 AMJ96_CH02963 08130f4218769ed9a3c10f4a6cf12b9d 364 SUPERFAMILY SSF117892 110 254 1.7E-23 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily AMJ96_CH02963 08130f4218769ed9a3c10f4a6cf12b9d 364 Pfam PF12221 Bacterial membrane protein N terminal 1 58 1.3E-7 T 12-10-2018 IPR020980 Menbrane protein HflK, N-terminal AMJ96_CH02963 08130f4218769ed9a3c10f4a6cf12b9d 364 Pfam PF01145 SPFH domain / Band 7 family 82 262 2.3E-29 T 12-10-2018 IPR001107 Band 7 domain AMJ96_CH03171 2530f9d5e66bda80366705feda9f93c2 217 Gene3D G3DSA:3.60.15.10 5 213 4.0E-72 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH03171 2530f9d5e66bda80366705feda9f93c2 217 SUPERFAMILY SSF56281 4 212 1.76E-53 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH03171 2530f9d5e66bda80366705feda9f93c2 217 Pfam PF00753 Metallo-beta-lactamase superfamily 12 195 1.5E-29 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH03171 2530f9d5e66bda80366705feda9f93c2 217 SMART SM00849 15 195 4.1E-36 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH02010 6db2d51cecab434042a894e5198f03b6 323 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 17 66 7.2E-7 T 12-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMJ96_CH02010 6db2d51cecab434042a894e5198f03b6 323 Gene3D G3DSA:3.20.20.70 77 295 9.9E-19 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH02010 6db2d51cecab434042a894e5198f03b6 323 Hamap MF_00206 Lipoyl synthase [lipA]. 1 315 150.699 T 12-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMJ96_CH02010 6db2d51cecab434042a894e5198f03b6 323 Pfam PF04055 Radical SAM superfamily 83 243 9.6E-11 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMJ96_CH02010 6db2d51cecab434042a894e5198f03b6 323 PIRSF PIRSF005963 4 322 4.0E-132 T 12-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMJ96_CH02010 6db2d51cecab434042a894e5198f03b6 323 SMART SM00729 77 284 3.2E-6 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMJ96_CH02010 6db2d51cecab434042a894e5198f03b6 323 SUPERFAMILY SSF102114 42 305 9.16E-62 T 12-10-2018 AMJ96_CH02010 6db2d51cecab434042a894e5198f03b6 323 TIGRFAM TIGR00510 lipA: lipoyl synthase 21 310 1.7E-111 T 12-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AMJ96_CH00501 97990b60f777addbcd21df37135fecb7 249 Gene3D G3DSA:1.10.3720.10 44 236 2.5E-22 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00501 97990b60f777addbcd21df37135fecb7 249 SUPERFAMILY SSF161098 48 228 4.84E-27 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00501 97990b60f777addbcd21df37135fecb7 249 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 71 241 4.2E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00562 e6d98d410ce544b2af7dafae87d90d0f 153 Pfam PF02627 Carboxymuconolactone decarboxylase family 12 93 1.9E-20 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMJ96_CH00562 e6d98d410ce544b2af7dafae87d90d0f 153 Gene3D G3DSA:1.20.1290.10 1 153 2.9E-54 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_CH00562 e6d98d410ce544b2af7dafae87d90d0f 153 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 35 77 8.6E-14 T 12-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMJ96_CH00562 e6d98d410ce544b2af7dafae87d90d0f 153 SUPERFAMILY SSF69118 4 144 7.51E-49 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_PC00122 c8e1c221398cb5aaedf0e8700e75e592 705 SUPERFAMILY SSF50156 237 318 2.75E-12 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 AMJ96_PC00122 c8e1c221398cb5aaedf0e8700e75e592 705 SMART SM00228 239 317 2.2E-6 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_PC00122 c8e1c221398cb5aaedf0e8700e75e592 705 SUPERFAMILY SSF52096 182 544 4.97E-61 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_PC00122 c8e1c221398cb5aaedf0e8700e75e592 705 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 190 559 4.8E-83 T 12-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 AMJ96_PC00122 c8e1c221398cb5aaedf0e8700e75e592 705 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 544 684 4.3E-32 T 12-10-2018 IPR020992 Tail specific protease, C-terminal AMJ96_PC00122 c8e1c221398cb5aaedf0e8700e75e592 705 Pfam PF03572 Peptidase family S41 356 538 1.0E-48 T 12-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMJ96_PC00122 c8e1c221398cb5aaedf0e8700e75e592 705 Gene3D G3DSA:3.90.226.10 321 560 5.1E-57 T 12-10-2018 AMJ96_PC00122 c8e1c221398cb5aaedf0e8700e75e592 705 Gene3D G3DSA:2.30.42.10 229 314 1.1E-11 T 12-10-2018 AMJ96_PC00122 c8e1c221398cb5aaedf0e8700e75e592 705 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 233 313 5.0E-12 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_PC00122 c8e1c221398cb5aaedf0e8700e75e592 705 SMART SM00245 322 540 3.7E-48 T 12-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AMJ96_CH02951 ddef88c8cfde965990fed43c24101d36 282 Pfam PF00248 Aldo/keto reductase family 20 268 6.3E-51 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_CH02951 ddef88c8cfde965990fed43c24101d36 282 PIRSF PIRSF000097 118 270 1.0E-21 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH02951 ddef88c8cfde965990fed43c24101d36 282 PIRSF PIRSF000097 3 121 2.9E-15 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH02951 ddef88c8cfde965990fed43c24101d36 282 SUPERFAMILY SSF51430 10 272 2.36E-81 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH02951 ddef88c8cfde965990fed43c24101d36 282 PRINTS PR00069 Aldo-keto reductase signature 44 68 7.9E-14 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH02951 ddef88c8cfde965990fed43c24101d36 282 PRINTS PR00069 Aldo-keto reductase signature 130 147 7.9E-14 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH02951 ddef88c8cfde965990fed43c24101d36 282 PRINTS PR00069 Aldo-keto reductase signature 100 118 7.9E-14 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH02951 ddef88c8cfde965990fed43c24101d36 282 PRINTS PR00069 Aldo-keto reductase signature 204 228 7.9E-14 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH02951 ddef88c8cfde965990fed43c24101d36 282 Gene3D G3DSA:3.20.20.100 2 282 3.8E-103 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH02029 92e4275acfe1b3f886c6d30a6e777076 255 Gene3D G3DSA:3.40.50.300 13 255 8.4E-77 T 12-10-2018 AMJ96_CH02029 92e4275acfe1b3f886c6d30a6e777076 255 SUPERFAMILY SSF52540 15 248 1.14E-79 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02029 92e4275acfe1b3f886c6d30a6e777076 255 PIRSF PIRSF039085 11 254 2.7E-107 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMJ96_CH02029 92e4275acfe1b3f886c6d30a6e777076 255 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02029 92e4275acfe1b3f886c6d30a6e777076 255 Pfam PF00005 ABC transporter 30 178 1.6E-37 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02029 92e4275acfe1b3f886c6d30a6e777076 255 SMART SM00382 39 226 3.7E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04128 68baa1a2652aef4e383211ba37d73166 311 SUPERFAMILY SSF56349 123 309 1.59E-45 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMJ96_CH04128 68baa1a2652aef4e383211ba37d73166 311 Pfam PF00589 Phage integrase family 149 296 9.2E-32 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AMJ96_CH04128 68baa1a2652aef4e383211ba37d73166 311 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 14 311 52.417 T 12-10-2018 IPR023009 Tyrosine recombinase XerC/XerD AMJ96_CH04128 68baa1a2652aef4e383211ba37d73166 311 Gene3D G3DSA:1.10.150.130 13 123 3.0E-16 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal AMJ96_CH04128 68baa1a2652aef4e383211ba37d73166 311 SUPERFAMILY SSF47823 18 107 2.94E-11 T 12-10-2018 AMJ96_CH04128 68baa1a2652aef4e383211ba37d73166 311 Gene3D G3DSA:1.10.443.10 127 305 1.3E-45 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMJ96_CH04128 68baa1a2652aef4e383211ba37d73166 311 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 18 103 1.0E-13 T 12-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AMJ96_PD00271 04a493582517bc83f0d398c08f9afabb 249 SUPERFAMILY SSF46785 4 90 5.47E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00271 04a493582517bc83f0d398c08f9afabb 249 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 1.2E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00271 04a493582517bc83f0d398c08f9afabb 249 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 1.2E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00271 04a493582517bc83f0d398c08f9afabb 249 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 72 3.0E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00271 04a493582517bc83f0d398c08f9afabb 249 SMART SM00345 14 72 3.2E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00271 04a493582517bc83f0d398c08f9afabb 249 SUPERFAMILY SSF48008 78 206 5.75E-23 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00271 04a493582517bc83f0d398c08f9afabb 249 SMART SM00895 82 204 9.2E-12 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00271 04a493582517bc83f0d398c08f9afabb 249 Pfam PF07729 FCD domain 83 203 1.6E-15 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00271 04a493582517bc83f0d398c08f9afabb 249 Gene3D G3DSA:1.10.10.10 1 73 1.2E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00271 04a493582517bc83f0d398c08f9afabb 249 Gene3D G3DSA:1.20.120.530 75 211 7.2E-21 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH00214 b6aca4e18503adf05aa653fabfe8be88 491 Pfam PF00437 Type II/IV secretion system protein 135 410 4.0E-77 T 12-10-2018 IPR001482 Type II/IV secretion system protein AMJ96_CH00214 b6aca4e18503adf05aa653fabfe8be88 491 SUPERFAMILY SSF52540 115 437 5.6E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00214 b6aca4e18503adf05aa653fabfe8be88 491 Gene3D G3DSA:3.30.450.380 54 229 6.4E-42 T 12-10-2018 AMJ96_CH00214 b6aca4e18503adf05aa653fabfe8be88 491 Gene3D G3DSA:3.40.50.300 231 490 6.3E-71 T 12-10-2018 AMJ96_CH01347 b700ed94eb8d56abfa6898aaaf6f427b 293 Pfam PF01636 Phosphotransferase enzyme family 38 253 3.7E-13 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase AMJ96_CH01347 b700ed94eb8d56abfa6898aaaf6f427b 293 SUPERFAMILY SSF56112 26 245 1.88E-14 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily AMJ96_CH01347 b700ed94eb8d56abfa6898aaaf6f427b 293 Gene3D G3DSA:3.90.1200.10 97 287 1.1E-9 T 12-10-2018 AMJ96_CH01347 b700ed94eb8d56abfa6898aaaf6f427b 293 Gene3D G3DSA:3.30.200.20 6 86 5.9E-18 T 12-10-2018 AMJ96_CH02276 f21977e44dc01b3b2978a619856a7830 130 SUPERFAMILY SSF46955 5 116 1.1E-23 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily AMJ96_CH02276 f21977e44dc01b3b2978a619856a7830 130 Gene3D G3DSA:1.10.1660.10 6 126 3.5E-25 T 12-10-2018 AMJ96_CH02276 f21977e44dc01b3b2978a619856a7830 130 Pfam PF13411 MerR HTH family regulatory protein 7 72 7.2E-17 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH02276 f21977e44dc01b3b2978a619856a7830 130 SMART SM00422 7 74 1.7E-14 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH02627 a246aef3f1f7f0bd13e8ead77256d735 647 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 31 647 32.834 T 12-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup AMJ96_CH02627 a246aef3f1f7f0bd13e8ead77256d735 647 Pfam PF02705 K+ potassium transporter 40 569 6.5E-200 T 12-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 AMJ96_CH00787 c9a3079d828bdba530656db8086e8e25 265 Gene3D G3DSA:3.90.550.10 2 251 1.6E-47 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00787 c9a3079d828bdba530656db8086e8e25 265 SUPERFAMILY SSF53448 11 215 4.69E-46 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00787 c9a3079d828bdba530656db8086e8e25 265 Pfam PF00535 Glycosyl transferase family 2 14 132 9.1E-21 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_PD00148 4b7465d9fb4638cd4d79d57e63ea7b11 545 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 85 458 3.3E-58 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_PD00148 4b7465d9fb4638cd4d79d57e63ea7b11 545 Gene3D G3DSA:3.40.190.10 195 528 4.9E-82 T 12-10-2018 AMJ96_PD00148 4b7465d9fb4638cd4d79d57e63ea7b11 545 Gene3D G3DSA:3.90.76.10 79 194 4.9E-82 T 12-10-2018 AMJ96_PD00148 4b7465d9fb4638cd4d79d57e63ea7b11 545 Gene3D G3DSA:3.10.105.10 299 516 4.9E-82 T 12-10-2018 AMJ96_PD00148 4b7465d9fb4638cd4d79d57e63ea7b11 545 SUPERFAMILY SSF53850 41 533 7.06E-86 T 12-10-2018 AMJ96_PD00148 4b7465d9fb4638cd4d79d57e63ea7b11 545 PIRSF PIRSF002741 77 538 9.4E-60 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_CH04209 8e5020a2f4d798d23672abab349142ef 180 SUPERFAMILY SSF50104 1 126 5.01E-47 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily AMJ96_CH04209 8e5020a2f4d798d23672abab349142ef 180 Gene3D G3DSA:2.30.30.790 2 123 3.8E-17 T 12-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04209 8e5020a2f4d798d23672abab349142ef 180 Pfam PF01245 Ribosomal protein L19 2 116 6.5E-49 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04209 8e5020a2f4d798d23672abab349142ef 180 ProSitePatterns PS01015 Ribosomal protein L19 signature. 90 105 - T 12-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH04209 8e5020a2f4d798d23672abab349142ef 180 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 1 118 30.925 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04209 8e5020a2f4d798d23672abab349142ef 180 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 1 116 1.6E-48 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04209 8e5020a2f4d798d23672abab349142ef 180 PRINTS PR00061 Ribosomal protein L19 signature 8 37 8.5E-37 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04209 8e5020a2f4d798d23672abab349142ef 180 PRINTS PR00061 Ribosomal protein L19 signature 38 67 8.5E-37 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04209 8e5020a2f4d798d23672abab349142ef 180 PRINTS PR00061 Ribosomal protein L19 signature 92 117 8.5E-37 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH03574 7a29d3a697b5fb2682558e1133332523 513 Pfam PF00999 Sodium/hydrogen exchanger family 10 396 1.1E-41 T 12-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMJ96_CH03574 7a29d3a697b5fb2682558e1133332523 513 Gene3D G3DSA:1.20.1530.20 3 401 2.2E-6 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily AMJ96_CH01371 0fb3e7f1896150d877c93a51ae6d7913 89 Gene3D G3DSA:1.25.40.10 12 88 1.0E-15 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01371 0fb3e7f1896150d877c93a51ae6d7913 89 SUPERFAMILY SSF81901 17 64 4.19E-6 T 12-10-2018 AMJ96_CH02351 47cc111fe49d5dbca0ca44b50240baa5 149 ProSitePatterns PS01029 Dehydroquinase class II signature. 7 24 - T 12-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMJ96_CH02351 47cc111fe49d5dbca0ca44b50240baa5 149 SUPERFAMILY SSF52304 4 144 1.31E-59 T 12-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMJ96_CH02351 47cc111fe49d5dbca0ca44b50240baa5 149 Gene3D G3DSA:3.40.50.9100 1 148 6.6E-65 T 12-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMJ96_CH02351 47cc111fe49d5dbca0ca44b50240baa5 149 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 149 69.209 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMJ96_CH02351 47cc111fe49d5dbca0ca44b50240baa5 149 PIRSF PIRSF001399 1 145 1.1E-61 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMJ96_CH02351 47cc111fe49d5dbca0ca44b50240baa5 149 Pfam PF01220 Dehydroquinase class II 4 139 1.3E-59 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMJ96_CH02351 47cc111fe49d5dbca0ca44b50240baa5 149 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 4 140 2.0E-73 T 12-10-2018 AMJ96_CH02351 47cc111fe49d5dbca0ca44b50240baa5 149 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 4 141 1.4E-56 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AMJ96_CH02791 7b3b95f2cc4ebc673f3cddb246716011 141 Pfam PF08592 Domain of unknown function (DUF1772) 41 138 6.1E-6 T 12-10-2018 AMJ96_CH01284 920789f5f89556fe106796677e3c79b8 736 Gene3D G3DSA:1.50.10.10 280 671 3.2E-61 T 12-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 AMJ96_CH01284 920789f5f89556fe106796677e3c79b8 736 SUPERFAMILY SSF48208 255 718 1.06E-93 T 12-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 AMJ96_CH01284 920789f5f89556fe106796677e3c79b8 736 Pfam PF06202 Amylo-alpha-1,6-glucosidase 296 662 2.5E-8 T 12-10-2018 IPR032790 Glycogen debranching enzyme, C-terminal KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-6798695|Reactome: R-HSA-70221 AMJ96_CH01284 920789f5f89556fe106796677e3c79b8 736 Pfam PF14742 N-terminal domain of (some) glycogen debranching enzymes 40 234 7.8E-58 T 12-10-2018 IPR032856 Putative glycogen debranching enzyme, N-terminal AMJ96_PC00265 0f52b2983b154763be7ca7eebae81400 272 Gene3D G3DSA:1.10.10.2520 51 131 1.0E-16 T 12-10-2018 AMJ96_PC00265 0f52b2983b154763be7ca7eebae81400 272 Pfam PF07486 Cell Wall Hydrolase 69 167 2.6E-15 T 12-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 AMJ96_CH02697 e6c8f41ed13a92999209094814d1416c 376 Pfam PF01494 FAD binding domain 4 161 2.8E-6 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 AMJ96_CH02697 e6c8f41ed13a92999209094814d1416c 376 Pfam PF01494 FAD binding domain 283 340 7.6E-9 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 AMJ96_CH02697 e6c8f41ed13a92999209094814d1416c 376 SUPERFAMILY SSF51905 4 356 1.3E-44 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02697 e6c8f41ed13a92999209094814d1416c 376 Gene3D G3DSA:3.50.50.60 1 361 9.6E-103 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02697 e6c8f41ed13a92999209094814d1416c 376 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 1.7E-17 T 12-10-2018 AMJ96_CH02697 e6c8f41ed13a92999209094814d1416c 376 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 1 23 1.7E-17 T 12-10-2018 AMJ96_CH02697 e6c8f41ed13a92999209094814d1416c 376 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 142 157 1.7E-17 T 12-10-2018 AMJ96_CH02697 e6c8f41ed13a92999209094814d1416c 376 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 1.7E-17 T 12-10-2018 AMJ96_CH01653 ae00453aeff463ec96c40661c5fb8b98 91 Pfam PF07330 Protein of unknown function (DUF1467) 6 81 8.0E-25 T 12-10-2018 IPR009935 Protein of unknown function DUF1467 AMJ96_PC00088 b47d263d2d525f3d5a9e7f41e427c10e 448 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 1 446 6.6E-187 T 12-10-2018 IPR010252 Formiminoglutamate deiminase AMJ96_PC00088 b47d263d2d525f3d5a9e7f41e427c10e 448 SUPERFAMILY SSF51338 3 432 3.24E-7 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_PC00088 b47d263d2d525f3d5a9e7f41e427c10e 448 Pfam PF01979 Amidohydrolase family 47 394 3.0E-26 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMJ96_PC00088 b47d263d2d525f3d5a9e7f41e427c10e 448 Gene3D G3DSA:3.20.20.140 51 438 4.9E-180 T 12-10-2018 AMJ96_PC00088 b47d263d2d525f3d5a9e7f41e427c10e 448 Gene3D G3DSA:2.30.40.10 9 426 4.9E-180 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_PC00088 b47d263d2d525f3d5a9e7f41e427c10e 448 SUPERFAMILY SSF51556 49 371 5.45E-71 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_CH02858 ed3b1d60b44aa92534d050088edf01ff 185 Pfam PF03729 Short repeat of unknown function (DUF308) 76 143 1.3E-6 T 12-10-2018 IPR005325 Protein of unknown function DUF308, membrane AMJ96_CH00829 5e963c9d708b4242a4f0aebe307ddca8 298 SUPERFAMILY SSF46785 2 111 4.36E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00829 5e963c9d708b4242a4f0aebe307ddca8 298 Pfam PF03466 LysR substrate binding domain 88 288 8.7E-46 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH00829 5e963c9d708b4242a4f0aebe307ddca8 298 Gene3D G3DSA:1.10.10.10 2 88 1.2E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00829 5e963c9d708b4242a4f0aebe307ddca8 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 4.2E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH00829 5e963c9d708b4242a4f0aebe307ddca8 298 SUPERFAMILY SSF53850 90 294 1.55E-47 T 12-10-2018 AMJ96_CH00829 5e963c9d708b4242a4f0aebe307ddca8 298 Gene3D G3DSA:3.40.190.290 91 290 3.2E-72 T 12-10-2018 AMJ96_CH03899 f430ac28b075636b3fc8f57bb4ffcf1e 508 Gene3D G3DSA:3.40.50.300 263 500 1.8E-38 T 12-10-2018 AMJ96_CH03899 f430ac28b075636b3fc8f57bb4ffcf1e 508 SUPERFAMILY SSF52540 264 497 6.47E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03899 f430ac28b075636b3fc8f57bb4ffcf1e 508 Pfam PF00005 ABC transporter 30 177 3.0E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03899 f430ac28b075636b3fc8f57bb4ffcf1e 508 SMART SM00382 286 488 2.7E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03899 f430ac28b075636b3fc8f57bb4ffcf1e 508 SMART SM00382 37 225 3.6E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03899 f430ac28b075636b3fc8f57bb4ffcf1e 508 Gene3D G3DSA:3.40.50.300 9 244 4.3E-51 T 12-10-2018 AMJ96_CH03899 f430ac28b075636b3fc8f57bb4ffcf1e 508 Pfam PF00005 ABC transporter 278 431 1.6E-16 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03899 f430ac28b075636b3fc8f57bb4ffcf1e 508 SUPERFAMILY SSF52540 12 231 1.33E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03899 f430ac28b075636b3fc8f57bb4ffcf1e 508 ProSitePatterns PS00211 ABC transporters family signature. 404 418 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02680 9825fae393fe60423400dde1dea6d4ea 332 Gene3D G3DSA:2.60.120.200 189 327 3.3E-12 T 12-10-2018 AMJ96_CH02680 9825fae393fe60423400dde1dea6d4ea 332 Gene3D G3DSA:2.60.120.200 56 188 1.1E-8 T 12-10-2018 AMJ96_CH02680 9825fae393fe60423400dde1dea6d4ea 332 Pfam PF14099 Polysaccharide lyase 58 302 1.2E-23 T 12-10-2018 IPR025975 Polysaccharide lyase MetaCyc: PWY-7644 AMJ96_CH02200 3f070231f47b1a98ab055678f82753ee 241 SMART SM00345 25 83 5.2E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02200 3f070231f47b1a98ab055678f82753ee 241 SMART SM00895 93 222 5.0E-17 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH02200 3f070231f47b1a98ab055678f82753ee 241 Gene3D G3DSA:1.20.120.530 88 230 3.2E-24 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH02200 3f070231f47b1a98ab055678f82753ee 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 57 1.8E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02200 3f070231f47b1a98ab055678f82753ee 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 57 73 1.8E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02200 3f070231f47b1a98ab055678f82753ee 241 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 81 9.1E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH02200 3f070231f47b1a98ab055678f82753ee 241 SUPERFAMILY SSF46785 17 101 2.7E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02200 3f070231f47b1a98ab055678f82753ee 241 SUPERFAMILY SSF48008 92 228 1.94E-24 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH02200 3f070231f47b1a98ab055678f82753ee 241 Gene3D G3DSA:1.10.10.10 9 84 5.9E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02200 3f070231f47b1a98ab055678f82753ee 241 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 43 54 4.5E-6 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH02200 3f070231f47b1a98ab055678f82753ee 241 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 54 73 4.5E-6 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH02200 3f070231f47b1a98ab055678f82753ee 241 Pfam PF07729 FCD domain 94 221 1.4E-19 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH03652 ccfc1cce5e5cec450c0ee20a816d4e99 259 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 249 1.2E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03652 ccfc1cce5e5cec450c0ee20a816d4e99 259 SUPERFAMILY SSF161098 4 252 7.66E-45 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03652 ccfc1cce5e5cec450c0ee20a816d4e99 259 Gene3D G3DSA:1.10.3720.10 3 251 1.4E-40 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00240 1e6de584a26f01fcc95e8993cfdaab9e 257 Gene3D G3DSA:3.90.550.10 1 257 2.0E-64 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00240 1e6de584a26f01fcc95e8993cfdaab9e 257 TIGRFAM TIGR02623 G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase 1 256 4.0E-126 T 12-10-2018 IPR013446 Glucose-1-phosphate cytidylyltransferase GO:0047343 KEGG: 00500+2.7.7.33|KEGG: 00520+2.7.7.33|MetaCyc: PWY-5833|MetaCyc: PWY-5940 AMJ96_CH00240 1e6de584a26f01fcc95e8993cfdaab9e 257 Pfam PF00483 Nucleotidyl transferase 2 201 1.5E-12 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AMJ96_CH00240 1e6de584a26f01fcc95e8993cfdaab9e 257 SUPERFAMILY SSF53448 1 256 6.07E-63 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00495 83ef69170ed7e79b7429df9295ac1a49 468 Gene3D G3DSA:3.40.50.2000 233 441 3.5E-163 T 12-10-2018 AMJ96_CH00495 83ef69170ed7e79b7429df9295ac1a49 468 TIGRFAM TIGR02400 trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 3 455 1.7E-186 T 12-10-2018 IPR012766 Alpha,alpha-trehalose-phosphate synthase GO:0003825|GO:0005992 KEGG: 00500+2.4.1.15 AMJ96_CH00495 83ef69170ed7e79b7429df9295ac1a49 468 Pfam PF00982 Glycosyltransferase family 20 5 455 3.9E-145 T 12-10-2018 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 KEGG: 00500+2.4.1.15 AMJ96_CH00495 83ef69170ed7e79b7429df9295ac1a49 468 SUPERFAMILY SSF53756 2 455 4.14E-154 T 12-10-2018 AMJ96_CH00495 83ef69170ed7e79b7429df9295ac1a49 468 Gene3D G3DSA:3.40.50.2000 22 452 3.5E-163 T 12-10-2018 AMJ96_PD00084 a5c5df70b8f3f38eaf9477a03d6b72b8 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 5.9E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00084 a5c5df70b8f3f38eaf9477a03d6b72b8 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 5.9E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00084 a5c5df70b8f3f38eaf9477a03d6b72b8 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 5.9E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00084 a5c5df70b8f3f38eaf9477a03d6b72b8 299 SUPERFAMILY SSF46785 2 112 7.2E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00084 a5c5df70b8f3f38eaf9477a03d6b72b8 299 Gene3D G3DSA:3.40.190.10 164 262 1.0E-48 T 12-10-2018 AMJ96_PD00084 a5c5df70b8f3f38eaf9477a03d6b72b8 299 SUPERFAMILY SSF53850 91 293 2.53E-37 T 12-10-2018 AMJ96_PD00084 a5c5df70b8f3f38eaf9477a03d6b72b8 299 Pfam PF03466 LysR substrate binding domain 89 291 1.9E-36 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PD00084 a5c5df70b8f3f38eaf9477a03d6b72b8 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 2.2E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00084 a5c5df70b8f3f38eaf9477a03d6b72b8 299 Gene3D G3DSA:1.10.10.10 3 89 9.0E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00084 a5c5df70b8f3f38eaf9477a03d6b72b8 299 Gene3D G3DSA:3.40.190.10 92 288 1.0E-48 T 12-10-2018 AMJ96_CH02037 f0ffd1a0d88c3ad70870575cd5634cdf 402 Gene3D G3DSA:3.90.1150.10 28 394 3.3E-126 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH02037 f0ffd1a0d88c3ad70870575cd5634cdf 402 Gene3D G3DSA:3.40.640.10 65 288 3.3E-126 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH02037 f0ffd1a0d88c3ad70870575cd5634cdf 402 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 238 251 - T 12-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AMJ96_CH02037 f0ffd1a0d88c3ad70870575cd5634cdf 402 Pfam PF00155 Aminotransferase class I and II 34 394 1.6E-65 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_CH02037 f0ffd1a0d88c3ad70870575cd5634cdf 402 SUPERFAMILY SSF53383 7 399 2.31E-104 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH02382 cf0076da6d5c77d1a0a017572921f360 148 SUPERFAMILY SSF55729 5 135 1.23E-29 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH02382 cf0076da6d5c77d1a0a017572921f360 148 Pfam PF00583 Acetyltransferase (GNAT) family 21 134 5.9E-13 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH02382 cf0076da6d5c77d1a0a017572921f360 148 Gene3D G3DSA:3.40.630.30 2 147 3.9E-38 T 12-10-2018 AMJ96_CH02783 c4a872c82774e22362d2243a436acf80 124 SUPERFAMILY SSF54593 2 120 2.95E-21 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH02783 c4a872c82774e22362d2243a436acf80 124 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 116 6.6E-9 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH02783 c4a872c82774e22362d2243a436acf80 124 Gene3D G3DSA:3.10.180.10 1 121 6.1E-35 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01150 3abfabf8338efb5d0299d363d21491ae 273 SUPERFAMILY SSF51197 30 258 8.15E-35 T 12-10-2018 AMJ96_CH01150 3abfabf8338efb5d0299d363d21491ae 273 Gene3D G3DSA:2.60.120.620 9 264 5.1E-38 T 12-10-2018 AMJ96_CH01150 3abfabf8338efb5d0299d363d21491ae 273 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 30 217 2.1E-20 T 12-10-2018 IPR008775 Phytanoyl-CoA dioxygenase AMJ96_CH03896 0dfd7f2f80dbec1c0d7f15fb273714e7 350 Pfam PF07582 AP endonuclease family 2 C terminus 280 334 1.8E-19 T 12-10-2018 IPR011418 AP endonuclease, family 2, C-terminal AMJ96_CH03896 0dfd7f2f80dbec1c0d7f15fb273714e7 350 Gene3D G3DSA:3.20.20.150 18 325 5.7E-68 T 12-10-2018 AMJ96_CH03896 0dfd7f2f80dbec1c0d7f15fb273714e7 350 Pfam PF01261 Xylose isomerase-like TIM barrel 29 279 9.7E-39 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMJ96_CH03896 0dfd7f2f80dbec1c0d7f15fb273714e7 350 SUPERFAMILY SSF51658 8 322 4.15E-62 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_CH00307 e0621f12bf28642eeaa2312f6cbeeff1 176 Gene3D G3DSA:3.40.430.10 3 173 1.8E-31 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMJ96_CH00307 e0621f12bf28642eeaa2312f6cbeeff1 176 Pfam PF01872 RibD C-terminal domain 3 157 8.6E-17 T 12-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AMJ96_CH00307 e0621f12bf28642eeaa2312f6cbeeff1 176 SUPERFAMILY SSF53597 2 175 1.06E-24 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMJ96_CH00390 c0087a645d5e452d96b338a7bdb663e2 534 Gene3D G3DSA:3.60.110.10 253 496 8.8E-17 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMJ96_CH00390 c0087a645d5e452d96b338a7bdb663e2 534 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 13 522 21.208 T 12-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 AMJ96_CH00390 c0087a645d5e452d96b338a7bdb663e2 534 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 76 478 2.5E-102 T 12-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 AMJ96_CH00390 c0087a645d5e452d96b338a7bdb663e2 534 SUPERFAMILY SSF56317 241 495 5.36E-39 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily AMJ96_CH00390 c0087a645d5e452d96b338a7bdb663e2 534 Pfam PF00795 Carbon-nitrogen hydrolase 243 495 8.7E-32 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 AMJ96_PD00697 29f7ce64c1a1ae5649a8c94456962cb2 402 Gene3D G3DSA:3.40.50.300 121 400 4.1E-65 T 12-10-2018 AMJ96_PD00697 29f7ce64c1a1ae5649a8c94456962cb2 402 TIGRFAM TIGR03453 partition_RepA: plasmid partitioning protein RepA 18 402 4.0E-183 T 12-10-2018 IPR017818 Plasmid partitioning protein, RepA AMJ96_PD00697 29f7ce64c1a1ae5649a8c94456962cb2 402 Gene3D G3DSA:1.10.1660.10 44 110 3.6E-5 T 12-10-2018 AMJ96_PD00697 29f7ce64c1a1ae5649a8c94456962cb2 402 SUPERFAMILY SSF52540 121 396 2.53E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00697 29f7ce64c1a1ae5649a8c94456962cb2 402 Pfam PF13614 AAA domain 121 295 5.2E-42 T 12-10-2018 IPR025669 AAA domain AMJ96_CH03384 e3d691616df9ac30bfdf92560610da3d 617 Gene3D G3DSA:3.30.70.1230 1 182 9.6E-56 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03384 e3d691616df9ac30bfdf92560610da3d 617 Gene3D G3DSA:1.25.40.10 351 613 4.4E-18 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03384 e3d691616df9ac30bfdf92560610da3d 617 SUPERFAMILY SSF55073 2 173 2.2E-43 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03384 e3d691616df9ac30bfdf92560610da3d 617 SUPERFAMILY SSF48452 431 584 1.21E-16 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03384 e3d691616df9ac30bfdf92560610da3d 617 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 7 158 2.4E-15 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH03384 e3d691616df9ac30bfdf92560610da3d 617 Pfam PF13432 Tetratricopeptide repeat 430 488 0.015 T 12-10-2018 AMJ96_CH02418 528612dec9c8104abb3198d2835116fd 479 Pfam PF01565 FAD binding domain 56 189 1.5E-31 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AMJ96_CH02418 528612dec9c8104abb3198d2835116fd 479 Gene3D G3DSA:3.30.43.10 30 108 3.4E-29 T 12-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 AMJ96_CH02418 528612dec9c8104abb3198d2835116fd 479 ProSitePatterns PS00862 Oxygen oxidoreductases covalent FAD-binding site. 55 88 - T 12-10-2018 IPR006093 Oxygen oxidoreductase covalent FAD-binding site GO:0016491|GO:0055114 AMJ96_CH02418 528612dec9c8104abb3198d2835116fd 479 Gene3D G3DSA:3.40.462.20 221 432 1.6E-119 T 12-10-2018 AMJ96_CH02418 528612dec9c8104abb3198d2835116fd 479 Pfam PF08031 Berberine and berberine like 427 471 5.7E-16 T 12-10-2018 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 AMJ96_CH02418 528612dec9c8104abb3198d2835116fd 479 SUPERFAMILY SSF56176 34 220 4.67E-55 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 AMJ96_CH02418 528612dec9c8104abb3198d2835116fd 479 Gene3D G3DSA:3.30.465.10 121 459 1.6E-119 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 AMJ96_CH02012 0336b2abbd3ec942389bf6ab70d151fd 150 Gene3D G3DSA:3.30.530.20 2 148 6.3E-41 T 12-10-2018 IPR023393 START-like domain superfamily AMJ96_CH02012 0336b2abbd3ec942389bf6ab70d151fd 150 SUPERFAMILY SSF55961 1 148 2.95E-36 T 12-10-2018 AMJ96_CH02012 0336b2abbd3ec942389bf6ab70d151fd 150 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 140 5.3E-31 T 12-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 AMJ96_CH02907 3471d90f933e94f5a375dc521440ed2f 353 Pfam PF04230 Polysaccharide pyruvyl transferase 14 291 1.1E-31 T 12-10-2018 IPR007345 Polysaccharide pyruvyl transferase AMJ96_PD00220 c20837db0a7346dd296b785b904e51b1 381 Pfam PF13416 Bacterial extracellular solute-binding protein 51 332 5.0E-25 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PD00220 c20837db0a7346dd296b785b904e51b1 381 SUPERFAMILY SSF53850 26 375 1.04E-36 T 12-10-2018 AMJ96_PD00220 c20837db0a7346dd296b785b904e51b1 381 Gene3D G3DSA:3.40.190.10 25 379 9.6E-22 T 12-10-2018 AMJ96_CH02034 0eb661a16bd92db3a4b09375d39d9865 328 Pfam PF02653 Branched-chain amino acid transport system / permease component 42 305 1.7E-43 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH00854 c2ce840999c8af06a1237a39eb09584e 968 Gene3D G3DSA:3.40.50.620 31 669 4.0E-217 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH00854 c2ce840999c8af06a1237a39eb09584e 968 Gene3D G3DSA:3.90.740.10 209 443 4.0E-217 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMJ96_CH00854 c2ce840999c8af06a1237a39eb09584e 968 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 21 873 8.4E-239 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMJ96_CH00854 c2ce840999c8af06a1237a39eb09584e 968 SUPERFAMILY SSF50677 217 438 3.56E-40 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AMJ96_CH00854 c2ce840999c8af06a1237a39eb09584e 968 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 8 962 19.434 T 12-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 AMJ96_CH00854 c2ce840999c8af06a1237a39eb09584e 968 SUPERFAMILY SSF47323 692 963 2.62E-57 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH00854 c2ce840999c8af06a1237a39eb09584e 968 SUPERFAMILY SSF52374 8 686 5.22E-127 T 12-10-2018 AMJ96_CH00854 c2ce840999c8af06a1237a39eb09584e 968 Gene3D G3DSA:1.10.730.20 680 964 1.4E-73 T 12-10-2018 AMJ96_CH00854 c2ce840999c8af06a1237a39eb09584e 968 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 567 580 2.3E-29 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMJ96_CH00854 c2ce840999c8af06a1237a39eb09584e 968 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 57 68 2.3E-29 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMJ96_CH00854 c2ce840999c8af06a1237a39eb09584e 968 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 601 610 2.3E-29 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMJ96_CH00854 c2ce840999c8af06a1237a39eb09584e 968 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 436 451 2.3E-29 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMJ96_CH00854 c2ce840999c8af06a1237a39eb09584e 968 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 243 266 2.3E-29 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AMJ96_CH00854 c2ce840999c8af06a1237a39eb09584e 968 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 64 75 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH00854 c2ce840999c8af06a1237a39eb09584e 968 Pfam PF08264 Anticodon-binding domain of tRNA 724 872 5.5E-22 T 12-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 AMJ96_CH00854 c2ce840999c8af06a1237a39eb09584e 968 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 34 680 1.3E-171 T 12-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH00896 a6b6c045e209b8df0f8c97f48f02911f 346 Gene3D G3DSA:1.10.600.10 17 346 3.3E-105 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMJ96_CH00896 a6b6c045e209b8df0f8c97f48f02911f 346 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 103 117 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site AMJ96_CH00896 a6b6c045e209b8df0f8c97f48f02911f 346 Pfam PF00348 Polyprenyl synthetase 53 296 7.8E-69 T 12-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 AMJ96_CH00896 a6b6c045e209b8df0f8c97f48f02911f 346 SUPERFAMILY SSF48576 22 345 4.64E-93 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMJ96_PA00032 c8969e4f5baabf7461abdd024d30a688 290 SUPERFAMILY SSF161098 19 284 3.83E-55 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00032 c8969e4f5baabf7461abdd024d30a688 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 275 1.5E-8 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PA00032 c8969e4f5baabf7461abdd024d30a688 290 Gene3D G3DSA:1.10.3720.10 24 287 9.4E-53 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00426 6fd68558dfc2b3ef54472b5e9f3ef90d 442 Pfam PF01645 Conserved region in glutamate synthase 356 404 2.0E-6 T 12-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 AMJ96_PC00426 6fd68558dfc2b3ef54472b5e9f3ef90d 442 Pfam PF01645 Conserved region in glutamate synthase 81 332 5.1E-76 T 12-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 AMJ96_PC00426 6fd68558dfc2b3ef54472b5e9f3ef90d 442 Gene3D G3DSA:3.20.20.70 63 432 6.8E-100 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_PC00426 6fd68558dfc2b3ef54472b5e9f3ef90d 442 SUPERFAMILY SSF51395 9 428 8.18E-90 T 12-10-2018 AMJ96_PC00426 6fd68558dfc2b3ef54472b5e9f3ef90d 442 PIRSF PIRSF500061 3 441 8.1E-170 T 12-10-2018 AMJ96_PC00426 6fd68558dfc2b3ef54472b5e9f3ef90d 442 PIRSF PIRSF006429 2 441 1.5E-152 T 12-10-2018 IPR024188 Glutamate synthase large subunit-like protein AMJ96_CH01102 b27b6fcbb2ccd0239a09de8c05609e8c 154 Gene3D G3DSA:3.30.530.20 5 152 7.6E-34 T 12-10-2018 IPR023393 START-like domain superfamily AMJ96_CH01102 b27b6fcbb2ccd0239a09de8c05609e8c 154 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 21 150 1.1E-20 T 12-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like AMJ96_CH01102 b27b6fcbb2ccd0239a09de8c05609e8c 154 SUPERFAMILY SSF55961 6 152 1.44E-34 T 12-10-2018 AMJ96_CH03271 909438fe231e8af67d8f3b4179aad294 353 SUPERFAMILY SSF51679 1 340 4.06E-81 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_CH03271 909438fe231e8af67d8f3b4179aad294 353 TIGRFAM TIGR03858 LLM_2I7G: probable oxidoreductase, LLM family 2 339 7.7E-159 T 12-10-2018 IPR022290 Conserved hypothetical protein CHP03858, luciferase-like monooxygenase, putative AMJ96_CH03271 909438fe231e8af67d8f3b4179aad294 353 Gene3D G3DSA:3.20.20.30 1 353 9.1E-97 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_CH03271 909438fe231e8af67d8f3b4179aad294 353 Pfam PF00296 Luciferase-like monooxygenase 4 301 4.3E-50 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMJ96_CH01534 4ff5116a5347330e7d5d99b409017ee3 237 Gene3D G3DSA:3.40.50.300 43 159 2.8E-12 T 12-10-2018 AMJ96_CH01534 4ff5116a5347330e7d5d99b409017ee3 237 Pfam PF00308 Bacterial dnaA protein 112 206 1.0E-5 T 12-10-2018 IPR013317 Chromosomal replication initiator protein DnaA AMJ96_CH01534 4ff5116a5347330e7d5d99b409017ee3 237 SUPERFAMILY SSF52540 36 216 1.7E-15 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01534 4ff5116a5347330e7d5d99b409017ee3 237 Gene3D G3DSA:1.10.8.60 162 228 7.1E-6 T 12-10-2018 AMJ96_CH04253 d9f804367bed8ecb21223dbfb627564e 253 SMART SM00382 26 219 2.1E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04253 d9f804367bed8ecb21223dbfb627564e 253 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH04253 d9f804367bed8ecb21223dbfb627564e 253 SUPERFAMILY SSF52540 1 241 7.59E-74 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04253 d9f804367bed8ecb21223dbfb627564e 253 Pfam PF00005 ABC transporter 17 171 2.0E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH04253 d9f804367bed8ecb21223dbfb627564e 253 PIRSF PIRSF039085 1 247 6.0E-99 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMJ96_CH04253 d9f804367bed8ecb21223dbfb627564e 253 Gene3D G3DSA:3.40.50.300 1 252 1.4E-74 T 12-10-2018 AMJ96_CH03967 afb0ad9fe8efe7766f7e9447452d9fc7 236 PIRSF PIRSF006293 1 221 9.7E-77 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AMJ96_CH03967 afb0ad9fe8efe7766f7e9447452d9fc7 236 Gene3D G3DSA:3.40.50.620 1 218 1.9E-62 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH03967 afb0ad9fe8efe7766f7e9447452d9fc7 236 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 4 202 8.1E-54 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AMJ96_CH03967 afb0ad9fe8efe7766f7e9447452d9fc7 236 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 1 215 47.862 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AMJ96_CH03967 afb0ad9fe8efe7766f7e9447452d9fc7 236 Pfam PF06508 Queuosine biosynthesis protein QueC 3 208 2.1E-54 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AMJ96_CH03967 afb0ad9fe8efe7766f7e9447452d9fc7 236 SUPERFAMILY SSF52402 1 224 2.87E-57 T 12-10-2018 AMJ96_PA00146 6cdc5e42ddff66bf556982c6b89bd7e9 628 Gene3D G3DSA:3.40.50.410 436 617 6.6E-16 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMJ96_PA00146 6cdc5e42ddff66bf556982c6b89bd7e9 628 SMART SM00327 438 627 1.9E-17 T 12-10-2018 IPR002035 von Willebrand factor, type A AMJ96_PA00146 6cdc5e42ddff66bf556982c6b89bd7e9 628 Pfam PF00092 von Willebrand factor type A domain 443 600 1.1E-8 T 12-10-2018 IPR002035 von Willebrand factor, type A AMJ96_PA00146 6cdc5e42ddff66bf556982c6b89bd7e9 628 SUPERFAMILY SSF53300 442 624 7.97E-20 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMJ96_CH04048 584b496622666c7a060be023804fa86d 236 ProDom PD207074 TRANSMEMBRANE MEMBRANE UNCHARACTERIZED RC1356 RP875 44 183 2.0E-4 T 12-10-2018 AMJ96_CH04048 584b496622666c7a060be023804fa86d 236 Pfam PF02698 DUF218 domain 69 208 2.5E-14 T 12-10-2018 IPR003848 Domain of unknown function DUF218 AMJ96_PD00549 c624d1ad23d182515018abea39399e9f 288 SUPERFAMILY SSF53807 27 283 3.77E-46 T 12-10-2018 AMJ96_PD00549 c624d1ad23d182515018abea39399e9f 288 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 44 62 3.4E-15 T 12-10-2018 AMJ96_PD00549 c624d1ad23d182515018abea39399e9f 288 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 75 90 3.4E-15 T 12-10-2018 AMJ96_PD00549 c624d1ad23d182515018abea39399e9f 288 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 174 189 3.4E-15 T 12-10-2018 AMJ96_PD00549 c624d1ad23d182515018abea39399e9f 288 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 198 216 3.4E-15 T 12-10-2018 AMJ96_PD00549 c624d1ad23d182515018abea39399e9f 288 Pfam PF01497 Periplasmic binding protein 27 259 1.2E-22 T 12-10-2018 IPR002491 ABC transporter periplasmic binding domain AMJ96_PD00549 c624d1ad23d182515018abea39399e9f 288 Gene3D G3DSA:3.40.50.1980 113 288 8.5E-52 T 12-10-2018 AMJ96_PD00549 c624d1ad23d182515018abea39399e9f 288 Gene3D G3DSA:3.40.50.1980 25 111 8.8E-18 T 12-10-2018 AMJ96_CH01316 001e3317987aff312ac08291caf015c8 296 Gene3D G3DSA:3.40.190.10 163 262 1.7E-59 T 12-10-2018 AMJ96_CH01316 001e3317987aff312ac08291caf015c8 296 Gene3D G3DSA:3.40.190.10 91 287 1.7E-59 T 12-10-2018 AMJ96_CH01316 001e3317987aff312ac08291caf015c8 296 SUPERFAMILY SSF46785 4 109 2.31E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01316 001e3317987aff312ac08291caf015c8 296 Gene3D G3DSA:1.10.10.10 3 88 3.0E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01316 001e3317987aff312ac08291caf015c8 296 SUPERFAMILY SSF53850 90 293 1.77E-40 T 12-10-2018 AMJ96_CH01316 001e3317987aff312ac08291caf015c8 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 3.4E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01316 001e3317987aff312ac08291caf015c8 296 Pfam PF03466 LysR substrate binding domain 89 290 1.9E-39 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH01673 7ea44ff4ddcd5c079283f003bc3a2f68 206 Pfam PF02660 Glycerol-3-phosphate acyltransferase 21 194 2.1E-48 T 12-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AMJ96_CH01673 7ea44ff4ddcd5c079283f003bc3a2f68 206 SMART SM01207 20 195 3.1E-81 T 12-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AMJ96_CH01673 7ea44ff4ddcd5c079283f003bc3a2f68 206 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 17 203 20.211 T 12-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AMJ96_CH01673 7ea44ff4ddcd5c079283f003bc3a2f68 206 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 14 204 6.8E-51 T 12-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AMJ96_PA00288 4dea3747ae8110ab564c185616114307 629 Gene3D G3DSA:3.10.180.10 283 433 3.3E-36 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_PA00288 4dea3747ae8110ab564c185616114307 629 Pfam PF01261 Xylose isomerase-like TIM barrel 18 218 9.5E-37 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMJ96_PA00288 4dea3747ae8110ab564c185616114307 629 SUPERFAMILY SSF54593 278 615 6.75E-55 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_PA00288 4dea3747ae8110ab564c185616114307 629 SUPERFAMILY SSF51658 1 269 8.98E-76 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_PA00288 4dea3747ae8110ab564c185616114307 629 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 286 422 8.0E-34 T 12-10-2018 AMJ96_PA00288 4dea3747ae8110ab564c185616114307 629 Gene3D G3DSA:3.10.180.10 434 622 3.9E-40 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_PA00288 4dea3747ae8110ab564c185616114307 629 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 452 582 2.6E-4 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_PA00288 4dea3747ae8110ab564c185616114307 629 Gene3D G3DSA:3.20.20.150 1 268 6.0E-70 T 12-10-2018 AMJ96_PD00312 4f3c351c25f5c1012997f7447dffc702 367 Pfam PF00356 Bacterial regulatory proteins, lacI family 19 63 3.6E-12 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00312 4f3c351c25f5c1012997f7447dffc702 367 Pfam PF13377 Periplasmic binding protein-like domain 189 349 1.6E-32 T 12-10-2018 AMJ96_PD00312 4f3c351c25f5c1012997f7447dffc702 367 Gene3D G3DSA:1.10.260.40 12 63 3.2E-17 T 12-10-2018 AMJ96_PD00312 4f3c351c25f5c1012997f7447dffc702 367 Gene3D G3DSA:3.40.50.2300 79 325 7.6E-62 T 12-10-2018 AMJ96_PD00312 4f3c351c25f5c1012997f7447dffc702 367 Gene3D G3DSA:3.40.50.2300 181 310 7.6E-62 T 12-10-2018 AMJ96_PD00312 4f3c351c25f5c1012997f7447dffc702 367 SMART SM00354 17 90 2.7E-6 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00312 4f3c351c25f5c1012997f7447dffc702 367 SUPERFAMILY SSF53822 94 353 1.63E-65 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PD00312 4f3c351c25f5c1012997f7447dffc702 367 SUPERFAMILY SSF47413 17 65 1.37E-10 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH03075 7b6129baa90310057609ee71ede8240d 419 SUPERFAMILY SSF48208 12 404 2.69E-105 T 12-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 AMJ96_CH03075 7b6129baa90310057609ee71ede8240d 419 Gene3D G3DSA:1.50.10.10 12 417 2.3E-135 T 12-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 AMJ96_CH03075 7b6129baa90310057609ee71ede8240d 419 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 43 396 1.3E-114 T 12-10-2018 AMJ96_CH01959 22efb3bd2d0658322d4c003a41e1d81a 381 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 167 265 3.5E-22 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_CH01959 22efb3bd2d0658322d4c003a41e1d81a 381 SUPERFAMILY SSF161098 168 356 3.01E-39 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01959 22efb3bd2d0658322d4c003a41e1d81a 381 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 187 375 4.9E-22 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH01959 22efb3bd2d0658322d4c003a41e1d81a 381 Gene3D G3DSA:1.10.3720.10 161 379 1.4E-45 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00278 96ca8ba1c1ff478acea23da1baf7ecf8 331 SUPERFAMILY SSF51430 1 310 1.96E-102 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH00278 96ca8ba1c1ff478acea23da1baf7ecf8 331 Gene3D G3DSA:3.20.20.100 1 330 6.4E-122 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH00278 96ca8ba1c1ff478acea23da1baf7ecf8 331 Pfam PF00248 Aldo/keto reductase family 15 310 1.7E-79 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_CH00772 527a991cee61150802501857d4cff929 103 Gene3D G3DSA:3.30.70.100 1 103 5.4E-27 T 12-10-2018 AMJ96_CH00772 527a991cee61150802501857d4cff929 103 Pfam PF03992 Antibiotic biosynthesis monooxygenase 5 80 1.3E-14 T 12-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AMJ96_CH00772 527a991cee61150802501857d4cff929 103 SUPERFAMILY SSF54909 5 94 4.13E-20 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH02952 baaedae798cf734b3136d93b3b198576 190 SUPERFAMILY SSF55021 24 98 7.4E-19 T 12-10-2018 AMJ96_CH02952 baaedae798cf734b3136d93b3b198576 190 Pfam PF01842 ACT domain 24 88 4.0E-13 T 12-10-2018 IPR002912 ACT domain AMJ96_CH02952 baaedae798cf734b3136d93b3b198576 190 Gene3D G3DSA:3.30.70.1150 112 190 6.8E-26 T 12-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal AMJ96_CH02952 baaedae798cf734b3136d93b3b198576 190 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 23 98 4.0E-35 T 12-10-2018 AMJ96_CH02952 baaedae798cf734b3136d93b3b198576 190 Pfam PF10369 Small subunit of acetolactate synthase 113 186 5.2E-25 T 12-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AMJ96_CH02952 baaedae798cf734b3136d93b3b198576 190 SUPERFAMILY SSF55021 109 188 9.84E-25 T 12-10-2018 AMJ96_CH02952 baaedae798cf734b3136d93b3b198576 190 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 23 186 7.5E-51 T 12-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AMJ96_CH02952 baaedae798cf734b3136d93b3b198576 190 Gene3D G3DSA:3.30.70.260 20 100 2.9E-33 T 12-10-2018 AMJ96_PD00141 410717b095747c96d00822c5ec5b58aa 574 PIRSF PIRSF035859 1 574 0.0 T 12-10-2018 IPR014597 ABC transporter, periplasmic substrate-binding protein, predicted GO:0005215 AMJ96_PD00141 410717b095747c96d00822c5ec5b58aa 574 Gene3D G3DSA:3.40.190.10 184 502 2.0E-44 T 12-10-2018 AMJ96_PD00141 410717b095747c96d00822c5ec5b58aa 574 SUPERFAMILY SSF53850 64 512 2.47E-52 T 12-10-2018 AMJ96_PD00141 410717b095747c96d00822c5ec5b58aa 574 Gene3D G3DSA:3.40.190.10 82 459 2.0E-44 T 12-10-2018 AMJ96_CH01565 78e84822a90fa1e7d1d4e0c59c4cf7f0 348 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 2 335 9.8E-89 T 12-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 AMJ96_CH01565 78e84822a90fa1e7d1d4e0c59c4cf7f0 348 PIRSF PIRSF002465 1 339 7.6E-117 T 12-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 AMJ96_CH01565 78e84822a90fa1e7d1d4e0c59c4cf7f0 348 Pfam PF02504 Fatty acid synthesis protein 2 326 1.0E-98 T 12-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 AMJ96_CH01565 78e84822a90fa1e7d1d4e0c59c4cf7f0 348 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 340 144.741 T 12-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 AMJ96_CH01565 78e84822a90fa1e7d1d4e0c59c4cf7f0 348 Gene3D G3DSA:3.40.718.10 1 341 2.7E-114 T 12-10-2018 AMJ96_CH01565 78e84822a90fa1e7d1d4e0c59c4cf7f0 348 SUPERFAMILY SSF53659 2 337 2.47E-98 T 12-10-2018 AMJ96_PB00141 772e5c8dcb7320a1df6621d98b2db19a 163 Pfam PF13384 Homeodomain-like domain 6 47 5.5E-8 T 12-10-2018 AMJ96_PB00141 772e5c8dcb7320a1df6621d98b2db19a 163 SUPERFAMILY SSF46689 1 109 4.42E-19 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH01174 09cf229ecbb64b87526563d7e41d2b24 549 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 80 103 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AMJ96_CH01174 09cf229ecbb64b87526563d7e41d2b24 549 Gene3D G3DSA:3.50.50.60 3 525 5.5E-174 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01174 09cf229ecbb64b87526563d7e41d2b24 549 Pfam PF05199 GMC oxidoreductase 384 521 7.0E-41 T 12-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 AMJ96_CH01174 09cf229ecbb64b87526563d7e41d2b24 549 SUPERFAMILY SSF54373 287 469 2.26E-59 T 12-10-2018 AMJ96_CH01174 09cf229ecbb64b87526563d7e41d2b24 549 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 251 265 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AMJ96_CH01174 09cf229ecbb64b87526563d7e41d2b24 549 PIRSF PIRSF000137 2 536 3.4E-136 T 12-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AMJ96_CH01174 09cf229ecbb64b87526563d7e41d2b24 549 Gene3D G3DSA:3.30.410.40 149 466 5.5E-174 T 12-10-2018 AMJ96_CH01174 09cf229ecbb64b87526563d7e41d2b24 549 Gene3D G3DSA:1.10.1220.110 95 148 5.5E-174 T 12-10-2018 AMJ96_CH01174 09cf229ecbb64b87526563d7e41d2b24 549 TIGRFAM TIGR01810 betA: choline dehydrogenase 4 531 2.2E-288 T 12-10-2018 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 AMJ96_CH01174 09cf229ecbb64b87526563d7e41d2b24 549 Gene3D G3DSA:4.10.450.10 36 194 5.5E-174 T 12-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 AMJ96_CH01174 09cf229ecbb64b87526563d7e41d2b24 549 SUPERFAMILY SSF51905 1 529 2.3E-89 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01174 09cf229ecbb64b87526563d7e41d2b24 549 Pfam PF00732 GMC oxidoreductase 4 292 3.0E-99 T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AMJ96_CH01174 09cf229ecbb64b87526563d7e41d2b24 549 Hamap MF_00750 Oxygen-dependent choline dehydrogenase [betA]. 1 548 61.575 T 12-10-2018 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 AMJ96_CH02242 7be6d4e3805231e8322797be61560d3f 362 SUPERFAMILY SSF48256 3 359 7.72E-96 T 12-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 AMJ96_CH02242 7be6d4e3805231e8322797be61560d3f 362 Pfam PF00285 Citrate synthase, C-terminal domain 4 351 3.4E-90 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 AMJ96_CH02242 7be6d4e3805231e8322797be61560d3f 362 Gene3D G3DSA:1.10.580.10 15 341 1.6E-89 T 12-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMJ96_CH02242 7be6d4e3805231e8322797be61560d3f 362 ProSitePatterns PS00480 Citrate synthase signature. 243 255 - T 12-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AMJ96_CH02242 7be6d4e3805231e8322797be61560d3f 362 PRINTS PR00143 Citrate synthase signature 236 256 8.9E-30 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 AMJ96_CH02242 7be6d4e3805231e8322797be61560d3f 362 PRINTS PR00143 Citrate synthase signature 301 317 8.9E-30 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 AMJ96_CH02242 7be6d4e3805231e8322797be61560d3f 362 PRINTS PR00143 Citrate synthase signature 161 176 8.9E-30 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 AMJ96_CH02242 7be6d4e3805231e8322797be61560d3f 362 PRINTS PR00143 Citrate synthase signature 321 335 8.9E-30 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 AMJ96_CH02242 7be6d4e3805231e8322797be61560d3f 362 PRINTS PR00143 Citrate synthase signature 183 211 8.9E-30 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 AMJ96_CH02242 7be6d4e3805231e8322797be61560d3f 362 Gene3D G3DSA:1.10.230.10 209 315 1.6E-89 T 12-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain AMJ96_CH02242 7be6d4e3805231e8322797be61560d3f 362 PIRSF PIRSF001369 1 361 2.6E-86 T 12-10-2018 IPR024176 Citrate synthase, bacterial-type AMJ96_CH01410 1857bf1223504213a93faf78854488d2 228 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 168 192 2.8E-5 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH01410 1857bf1223504213a93faf78854488d2 228 SUPERFAMILY SSF51161 80 219 4.36E-32 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily AMJ96_CH01410 1857bf1223504213a93faf78854488d2 228 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 168 196 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMJ96_CH01410 1857bf1223504213a93faf78854488d2 228 Gene3D G3DSA:2.160.10.10 49 213 3.5E-37 T 12-10-2018 AMJ96_CH01410 1857bf1223504213a93faf78854488d2 228 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 83 112 0.016 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_PD00538 79a7d28795bbd84c82602b6ae5bb109b 297 Gene3D G3DSA:1.10.3720.10 99 289 5.1E-24 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00538 79a7d28795bbd84c82602b6ae5bb109b 297 SUPERFAMILY SSF161098 101 282 9.29E-28 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00538 79a7d28795bbd84c82602b6ae5bb109b 297 TIGRFAM TIGR01183 ntrB: nitrate ABC transporter, permease protein 85 285 1.8E-92 T 12-10-2018 IPR005889 Nitrate transport permease GO:0015112|GO:0015706|GO:0016021 AMJ96_PD00538 79a7d28795bbd84c82602b6ae5bb109b 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 121 292 1.0E-26 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PA00219 7bfce00fd1faa63fe2672b3f311a0f87 229 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 120 1.0E-15 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_PA00219 7bfce00fd1faa63fe2672b3f311a0f87 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 216 1.1E-10 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PA00219 7bfce00fd1faa63fe2672b3f311a0f87 229 Gene3D G3DSA:1.10.3720.10 1 226 3.0E-39 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00219 7bfce00fd1faa63fe2672b3f311a0f87 229 SUPERFAMILY SSF161098 10 211 2.75E-33 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00037 4fabbb5fd10fe08d79d0c307c8ad4b3b 509 Pfam PF05199 GMC oxidoreductase 441 496 1.5E-7 T 12-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 AMJ96_PA00037 4fabbb5fd10fe08d79d0c307c8ad4b3b 509 Pfam PF01266 FAD dependent oxidoreductase 7 290 2.8E-9 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_PA00037 4fabbb5fd10fe08d79d0c307c8ad4b3b 509 SUPERFAMILY SSF51905 5 503 3.95E-30 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PA00037 4fabbb5fd10fe08d79d0c307c8ad4b3b 509 Gene3D G3DSA:3.50.50.60 1 169 1.7E-9 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PA00037 4fabbb5fd10fe08d79d0c307c8ad4b3b 509 Gene3D G3DSA:3.50.50.60 415 504 4.4E-8 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03741 96ae5e97f261f298d163eed5fb5d3e3c 624 Pfam PF00999 Sodium/hydrogen exchanger family 12 388 3.3E-45 T 12-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AMJ96_CH03741 96ae5e97f261f298d163eed5fb5d3e3c 624 Gene3D G3DSA:1.20.1530.20 6 390 2.2E-11 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily AMJ96_CH04176 fda40cfae9d8dd28a27608afe70d737f 317 SUPERFAMILY SSF53822 40 291 4.21E-16 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH04176 fda40cfae9d8dd28a27608afe70d737f 317 Pfam PF04392 ABC transporter substrate binding protein 24 315 6.8E-104 T 12-10-2018 IPR007487 ABC transporter, substrate-binding protein AMJ96_CH04176 fda40cfae9d8dd28a27608afe70d737f 317 Gene3D G3DSA:3.40.50.2300 42 287 3.6E-97 T 12-10-2018 AMJ96_CH04176 fda40cfae9d8dd28a27608afe70d737f 317 Gene3D G3DSA:3.40.50.2300 138 309 3.6E-97 T 12-10-2018 AMJ96_CH00977 095b1cbbe2e8e7f4e9957453ba2c02f0 292 Gene3D G3DSA:1.10.287.70 4 85 2.6E-31 T 12-10-2018 AMJ96_CH00977 095b1cbbe2e8e7f4e9957453ba2c02f0 292 Gene3D G3DSA:1.20.120.80 86 284 2.0E-81 T 12-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00977 095b1cbbe2e8e7f4e9957453ba2c02f0 292 SUPERFAMILY SSF81452 5 283 5.89E-99 T 12-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00977 095b1cbbe2e8e7f4e9957453ba2c02f0 292 Pfam PF00510 Cytochrome c oxidase subunit III 9 283 3.2E-90 T 12-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH03662 fb105e652c23e64a8c4150b98ed18ca1 513 Gene3D G3DSA:3.40.50.1000 46 220 6.9E-12 T 12-10-2018 IPR023214 HAD superfamily AMJ96_CH03662 fb105e652c23e64a8c4150b98ed18ca1 513 Pfam PF01040 UbiA prenyltransferase family 258 481 4.7E-22 T 12-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 AMJ96_CH03662 fb105e652c23e64a8c4150b98ed18ca1 513 SUPERFAMILY SSF56784 46 199 3.05E-11 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_CH03662 fb105e652c23e64a8c4150b98ed18ca1 513 Gene3D G3DSA:1.10.357.140 240 381 2.0E-9 T 12-10-2018 AMJ96_PC00376 f85d99a92f045d2a93a39f98245994b6 419 Gene3D G3DSA:3.40.190.10 131 410 4.6E-68 T 12-10-2018 AMJ96_PC00376 f85d99a92f045d2a93a39f98245994b6 419 Pfam PF01547 Bacterial extracellular solute-binding protein 35 330 1.5E-32 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PC00376 f85d99a92f045d2a93a39f98245994b6 419 Gene3D G3DSA:3.40.190.10 37 369 4.6E-68 T 12-10-2018 AMJ96_PC00376 f85d99a92f045d2a93a39f98245994b6 419 SUPERFAMILY SSF53850 17 418 1.22E-61 T 12-10-2018 AMJ96_PD00569 52dab13e39d0ca32e135fbe372c24fbb 304 SUPERFAMILY SSF63829 8 301 2.4E-68 T 12-10-2018 AMJ96_PD00569 52dab13e39d0ca32e135fbe372c24fbb 304 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 164 186 4.1E-8 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_PD00569 52dab13e39d0ca32e135fbe372c24fbb 304 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 231 248 4.1E-8 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_PD00569 52dab13e39d0ca32e135fbe372c24fbb 304 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 34 51 4.1E-8 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_PD00569 52dab13e39d0ca32e135fbe372c24fbb 304 Gene3D G3DSA:2.120.10.30 2 297 3.7E-111 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMJ96_PD00569 52dab13e39d0ca32e135fbe372c24fbb 304 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 33 288 6.8E-62 T 12-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region AMJ96_CH00962 2f986d240ad3a9666bee243c1edc304d 206 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 164 206 1.4E-14 T 12-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMJ96_CH00962 2f986d240ad3a9666bee243c1edc304d 206 Gene3D G3DSA:2.30.110.10 3 206 7.6E-76 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMJ96_CH00962 2f986d240ad3a9666bee243c1edc304d 206 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 5 206 37.41 T 12-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMJ96_CH00962 2f986d240ad3a9666bee243c1edc304d 206 PIRSF PIRSF000190 3 206 1.8E-71 T 12-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMJ96_CH00962 2f986d240ad3a9666bee243c1edc304d 206 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 27 111 5.1E-26 T 12-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMJ96_CH00962 2f986d240ad3a9666bee243c1edc304d 206 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 15 206 9.4E-69 T 12-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMJ96_CH00962 2f986d240ad3a9666bee243c1edc304d 206 SUPERFAMILY SSF50475 15 206 2.68E-64 T 12-10-2018 AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 Pfam PF04542 Sigma-70 region 2 451 520 2.0E-21 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 Pfam PF00140 Sigma-70 factor, region 1.2 130 162 1.2E-13 T 12-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 Gene3D G3DSA:1.10.10.10 601 685 4.1E-36 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 SUPERFAMILY SSF88659 581 683 3.92E-26 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 448 672 2.3E-38 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 SUPERFAMILY SSF88659 524 597 3.4E-21 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 Gene3D G3DSA:1.10.10.10 524 599 2.1E-32 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 447 683 6.5E-120 T 12-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 PRINTS PR00046 Major sigma-70 factor signature 623 635 6.6E-31 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 PRINTS PR00046 Major sigma-70 factor signature 644 659 6.6E-31 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 PRINTS PR00046 Major sigma-70 factor signature 659 670 6.6E-31 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 PRINTS PR00046 Major sigma-70 factor signature 499 507 6.6E-31 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 PRINTS PR00046 Major sigma-70 factor signature 475 488 6.6E-31 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 644 670 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 Pfam PF03979 Sigma-70 factor, region 1.1 27 102 3.8E-22 T 12-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 Gene3D G3DSA:1.10.601.10 145 520 1.3E-113 T 12-10-2018 AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 475 488 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 Pfam PF04539 Sigma-70 region 3 530 605 2.8E-29 T 12-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 Gene3D G3DSA:1.10.220.120 27 85 7.0E-21 T 12-10-2018 AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 Pfam PF04546 Sigma-70, non-essential region 172 419 1.7E-42 T 12-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 Pfam PF04545 Sigma-70, region 4 619 672 1.8E-18 T 12-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 18 684 47.056 T 12-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 AMJ96_CH03114 a2b9c1878278b8709347749917eebcf8 685 SUPERFAMILY SSF88946 147 518 1.3E-96 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_PC00055 d4e20d52ba31e25823101541cb311136 318 SMART SM00382 37 178 1.6E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PC00055 d4e20d52ba31e25823101541cb311136 318 SUPERFAMILY SSF52540 7 289 1.1E-41 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00055 d4e20d52ba31e25823101541cb311136 318 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 40 170 1.0E-60 T 12-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 AMJ96_PC00055 d4e20d52ba31e25823101541cb311136 318 Gene3D G3DSA:3.40.50.300 4 204 8.6E-46 T 12-10-2018 AMJ96_PC00055 d4e20d52ba31e25823101541cb311136 318 PIRSF PIRSF002849 2 318 5.2E-119 T 12-10-2018 AMJ96_PC00055 d4e20d52ba31e25823101541cb311136 318 Gene3D G3DSA:1.10.8.300 206 314 5.8E-28 T 12-10-2018 AMJ96_CH00003 6f16a0dabb3b0b380984b00d52a689a2 285 Gene3D G3DSA:3.40.50.10860 14 268 2.0E-74 T 12-10-2018 AMJ96_CH00003 6f16a0dabb3b0b380984b00d52a689a2 285 SUPERFAMILY SSF53223 11 110 6.33E-27 T 12-10-2018 AMJ96_CH00003 6f16a0dabb3b0b380984b00d52a689a2 285 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 14 276 1.4E-64 T 12-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AMJ96_CH00003 6f16a0dabb3b0b380984b00d52a689a2 285 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 130 200 3.0E-10 T 12-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase AMJ96_CH00003 6f16a0dabb3b0b380984b00d52a689a2 285 Gene3D G3DSA:3.40.50.720 110 247 2.0E-74 T 12-10-2018 AMJ96_CH00003 6f16a0dabb3b0b380984b00d52a689a2 285 SUPERFAMILY SSF51735 111 277 5.79E-41 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00003 6f16a0dabb3b0b380984b00d52a689a2 285 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 9 280 31.142 T 12-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AMJ96_CH00003 6f16a0dabb3b0b380984b00d52a689a2 285 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 14 98 3.3E-25 T 12-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AMJ96_CH03410 20cd77bae7e32c78201ab0b9a7aa55b8 141 Gene3D G3DSA:1.10.260.40 7 74 6.5E-16 T 12-10-2018 AMJ96_CH03410 20cd77bae7e32c78201ab0b9a7aa55b8 141 SUPERFAMILY SSF47413 3 79 4.61E-27 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH03410 20cd77bae7e32c78201ab0b9a7aa55b8 141 SMART SM00530 16 71 3.8E-13 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH03410 20cd77bae7e32c78201ab0b9a7aa55b8 141 Pfam PF01381 Helix-turn-helix 20 70 3.6E-12 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH03402 76ece3eebe22db36092b55010c8e250a 586 Gene3D G3DSA:3.40.50.300 359 576 1.5E-66 T 12-10-2018 AMJ96_CH03402 76ece3eebe22db36092b55010c8e250a 586 Pfam PF00005 ABC transporter 385 531 1.3E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03402 76ece3eebe22db36092b55010c8e250a 586 Gene3D G3DSA:1.20.1560.10 23 347 9.0E-23 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH03402 76ece3eebe22db36092b55010c8e250a 586 SMART SM00382 392 577 2.7E-20 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03402 76ece3eebe22db36092b55010c8e250a 586 SUPERFAMILY SSF90123 25 330 6.67E-26 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 AMJ96_CH03402 76ece3eebe22db36092b55010c8e250a 586 ProSitePatterns PS00211 ABC transporters family signature. 503 517 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03402 76ece3eebe22db36092b55010c8e250a 586 SUPERFAMILY SSF52540 359 568 4.95E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03402 76ece3eebe22db36092b55010c8e250a 586 Pfam PF00664 ABC transporter transmembrane region 41 292 6.0E-11 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 AMJ96_CH01510 9b7355b02781c72b8ef446f1ce117179 679 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 476 500 1.1E-40 T 12-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AMJ96_CH01510 9b7355b02781c72b8ef446f1ce117179 679 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 610 632 1.1E-40 T 12-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AMJ96_CH01510 9b7355b02781c72b8ef446f1ce117179 679 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 504 523 1.1E-40 T 12-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AMJ96_CH01510 9b7355b02781c72b8ef446f1ce117179 679 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 534 554 1.1E-40 T 12-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AMJ96_CH01510 9b7355b02781c72b8ef446f1ce117179 679 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 450 468 1.1E-40 T 12-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AMJ96_CH01510 9b7355b02781c72b8ef446f1ce117179 679 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 589 604 1.1E-40 T 12-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AMJ96_CH01510 9b7355b02781c72b8ef446f1ce117179 679 SUPERFAMILY SSF53474 422 674 4.82E-46 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01510 9b7355b02781c72b8ef446f1ce117179 679 Pfam PF00326 Prolyl oligopeptidase family 473 677 2.0E-47 T 12-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AMJ96_CH01510 9b7355b02781c72b8ef446f1ce117179 679 SUPERFAMILY SSF50993 4 401 5.23E-21 T 12-10-2018 AMJ96_CH01510 9b7355b02781c72b8ef446f1ce117179 679 Gene3D G3DSA:2.130.10.120 48 411 6.0E-113 T 12-10-2018 AMJ96_CH01510 9b7355b02781c72b8ef446f1ce117179 679 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 4 401 4.1E-14 T 12-10-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 AMJ96_CH01510 9b7355b02781c72b8ef446f1ce117179 679 Gene3D G3DSA:3.40.50.1820 5 639 6.0E-113 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PA00076 33cdb14c455aac61f34a134069221b8a 228 SMART SM00862 149 225 7.3E-22 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_PA00076 33cdb14c455aac61f34a134069221b8a 228 Pfam PF00072 Response regulator receiver domain 4 112 1.7E-29 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PA00076 33cdb14c455aac61f34a134069221b8a 228 Gene3D G3DSA:3.40.50.2300 1 123 2.5E-36 T 12-10-2018 AMJ96_PA00076 33cdb14c455aac61f34a134069221b8a 228 SUPERFAMILY SSF52172 2 179 3.98E-40 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PA00076 33cdb14c455aac61f34a134069221b8a 228 SMART SM00448 2 112 2.4E-42 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PA00076 33cdb14c455aac61f34a134069221b8a 228 Gene3D G3DSA:1.10.10.10 126 228 2.7E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PA00076 33cdb14c455aac61f34a134069221b8a 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 225 3.5E-19 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH00312 6fdcbfc349b4e1769f8b9d50561629fd 149 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 23 139 2.7E-14 T 12-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 AMJ96_CH00312 6fdcbfc349b4e1769f8b9d50561629fd 149 Gene3D G3DSA:3.10.129.10 4 143 1.1E-33 T 12-10-2018 AMJ96_CH00312 6fdcbfc349b4e1769f8b9d50561629fd 149 Pfam PF03061 Thioesterase superfamily 52 123 9.2E-10 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMJ96_CH00312 6fdcbfc349b4e1769f8b9d50561629fd 149 SUPERFAMILY SSF54637 9 140 2.05E-27 T 12-10-2018 IPR029069 HotDog domain superfamily AMJ96_PD00247 c898fa84da5bc76a3f7f0e1fb1d61c9b 526 PIRSF PIRSF006446 357 521 2.5E-39 T 12-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AMJ96_PD00247 c898fa84da5bc76a3f7f0e1fb1d61c9b 526 PIRSF PIRSF006446 1 332 2.2E-112 T 12-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AMJ96_PD00247 c898fa84da5bc76a3f7f0e1fb1d61c9b 526 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 8 506 1.5E-177 T 12-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AMJ96_CH02234 1e0cf1f1ef1db6075c0d4fcb9f877b52 165 Gene3D G3DSA:3.30.70.640 6 164 2.8E-68 T 12-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMJ96_CH02234 1e0cf1f1ef1db6075c0d4fcb9f877b52 165 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 6 162 38.064 T 12-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMJ96_CH02234 1e0cf1f1ef1db6075c0d4fcb9f877b52 165 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 8 156 3.3E-63 T 12-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMJ96_CH02234 1e0cf1f1ef1db6075c0d4fcb9f877b52 165 Pfam PF01967 MoaC family 19 154 2.0E-55 T 12-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMJ96_CH02234 1e0cf1f1ef1db6075c0d4fcb9f877b52 165 SUPERFAMILY SSF55040 15 159 2.75E-61 T 12-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMJ96_PA00183 40989b45f2ea95c54e6f24115613f809 496 Gene3D G3DSA:1.10.1040.10 186 309 2.0E-23 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMJ96_PA00183 40989b45f2ea95c54e6f24115613f809 496 Pfam PF13279 Thioesterase-like superfamily 352 468 4.6E-14 T 12-10-2018 AMJ96_PA00183 40989b45f2ea95c54e6f24115613f809 496 SUPERFAMILY SSF51735 1 182 7.21E-42 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PA00183 40989b45f2ea95c54e6f24115613f809 496 Hamap MF_02129 L-carnitine dehydrogenase [lcdH]. 5 320 54.304 T 12-10-2018 IPR026578 L-carnitine dehydrogenase MetaCyc: PWY-3602|MetaCyc: PWY-7472 AMJ96_PA00183 40989b45f2ea95c54e6f24115613f809 496 Gene3D G3DSA:3.10.129.10 341 477 2.3E-31 T 12-10-2018 AMJ96_PA00183 40989b45f2ea95c54e6f24115613f809 496 SUPERFAMILY SSF54637 348 495 9.05E-39 T 12-10-2018 IPR029069 HotDog domain superfamily AMJ96_PA00183 40989b45f2ea95c54e6f24115613f809 496 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 186 251 3.0E-10 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMJ96_PA00183 40989b45f2ea95c54e6f24115613f809 496 Gene3D G3DSA:3.40.50.720 1 185 2.8E-44 T 12-10-2018 AMJ96_PA00183 40989b45f2ea95c54e6f24115613f809 496 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 6 181 5.3E-39 T 12-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 AMJ96_PA00183 40989b45f2ea95c54e6f24115613f809 496 SUPERFAMILY SSF48179 186 256 3.4E-8 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_PD00039 8c1682f770af481605cd78b3e27d2abe 214 Pfam PF10054 Predicted periplasmic lipoprotein (DUF2291) 10 211 4.3E-71 T 12-10-2018 IPR014582 Uncharacterised conserved protein UCP033535, periplasmic lipoprotein AMJ96_PD00039 8c1682f770af481605cd78b3e27d2abe 214 SUPERFAMILY SSF141318 40 211 3.4E-32 T 12-10-2018 IPR036215 TM0957-like superfamily AMJ96_PD00039 8c1682f770af481605cd78b3e27d2abe 214 PIRSF PIRSF033535 1 214 4.9E-79 T 12-10-2018 IPR014582 Uncharacterised conserved protein UCP033535, periplasmic lipoprotein AMJ96_PC00378 d9c030b81899f7490cfa491e5b10b57c 380 SUPERFAMILY SSF46689 300 352 3.2E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PC00378 d9c030b81899f7490cfa491e5b10b57c 380 SMART SM00342 266 349 3.4E-16 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_PC00378 d9c030b81899f7490cfa491e5b10b57c 380 Pfam PF14525 AraC-binding-like domain 80 214 6.6E-8 T 12-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like AMJ96_PC00378 d9c030b81899f7490cfa491e5b10b57c 380 Gene3D G3DSA:1.10.10.60 245 358 5.2E-22 T 12-10-2018 AMJ96_PC00378 d9c030b81899f7490cfa491e5b10b57c 380 Pfam PF12833 Helix-turn-helix domain 272 350 4.9E-17 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH03401 af10ff426567fbbb0f269e11848ea559 358 Pfam PF00535 Glycosyl transferase family 2 9 142 1.2E-32 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_CH03401 af10ff426567fbbb0f269e11848ea559 358 Gene3D G3DSA:3.90.550.10 2 252 1.2E-58 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03401 af10ff426567fbbb0f269e11848ea559 358 SUPERFAMILY SSF53448 6 234 1.88E-54 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH01543 03b1591e6e94abf885e754a40646ef87 751 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 12 750 32.966 T 12-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AMJ96_CH01543 03b1591e6e94abf885e754a40646ef87 751 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 658 695 2.4E-6 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMJ96_CH01543 03b1591e6e94abf885e754a40646ef87 751 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 614 643 0.059 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMJ96_CH01543 03b1591e6e94abf885e754a40646ef87 751 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 560 607 0.75 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AMJ96_CH01543 03b1591e6e94abf885e754a40646ef87 751 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 40 471 2.9E-142 T 12-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMJ96_CH01543 03b1591e6e94abf885e754a40646ef87 751 Gene3D G3DSA:3.30.1360.40 245 341 9.5E-184 T 12-10-2018 AMJ96_CH01543 03b1591e6e94abf885e754a40646ef87 751 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 18 749 1.3E-269 T 12-10-2018 AMJ96_CH01543 03b1591e6e94abf885e754a40646ef87 751 SUPERFAMILY SSF56719 39 488 2.35E-157 T 12-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMJ96_CH01543 03b1591e6e94abf885e754a40646ef87 751 Gene3D G3DSA:1.10.268.10 379 464 9.5E-184 T 12-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AMJ96_CH01543 03b1591e6e94abf885e754a40646ef87 751 SUPERFAMILY SSF101904 513 748 2.35E-49 T 12-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMJ96_CH01543 03b1591e6e94abf885e754a40646ef87 751 SMART SM00434 19 471 1.2E-230 T 12-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AMJ96_CH01543 03b1591e6e94abf885e754a40646ef87 751 Gene3D G3DSA:2.120.10.90 513 708 1.8E-13 T 12-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AMJ96_CH01543 03b1591e6e94abf885e754a40646ef87 751 Gene3D G3DSA:3.90.199.10 40 488 9.5E-184 T 12-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 AMJ96_PB00222 6c403ffca3c9e07f7b7280c04aad2d21 411 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 7 318 1.2E-59 T 12-10-2018 IPR019079 Capsule synthesis protein, CapA AMJ96_PB00222 6c403ffca3c9e07f7b7280c04aad2d21 411 SUPERFAMILY SSF56300 6 321 4.3E-18 T 12-10-2018 AMJ96_PB00222 6c403ffca3c9e07f7b7280c04aad2d21 411 SMART SM00854 6 319 6.3E-35 T 12-10-2018 IPR019079 Capsule synthesis protein, CapA AMJ96_PA00169 e1edc7f8cd5dcf6fe564c873b4d820ff 277 Gene3D G3DSA:3.40.50.12370 13 277 1.6E-25 T 12-10-2018 AMJ96_PA00169 e1edc7f8cd5dcf6fe564c873b4d820ff 277 Pfam PF00582 Universal stress protein family 153 275 3.7E-8 T 12-10-2018 IPR006016 UspA AMJ96_PA00169 e1edc7f8cd5dcf6fe564c873b4d820ff 277 PRINTS PR01438 Universal stress protein signature 152 170 6.7E-8 T 12-10-2018 IPR006015 Universal stress protein A AMJ96_PA00169 e1edc7f8cd5dcf6fe564c873b4d820ff 277 PRINTS PR01438 Universal stress protein signature 237 249 6.7E-8 T 12-10-2018 IPR006015 Universal stress protein A AMJ96_PA00169 e1edc7f8cd5dcf6fe564c873b4d820ff 277 PRINTS PR01438 Universal stress protein signature 255 277 6.7E-8 T 12-10-2018 IPR006015 Universal stress protein A AMJ96_PA00169 e1edc7f8cd5dcf6fe564c873b4d820ff 277 SUPERFAMILY SSF52402 153 277 1.09E-18 T 12-10-2018 AMJ96_CH01514 6aaeb5a0966168ea805abe07d1d26f0f 169 Pfam PF05163 DinB family 1 166 3.6E-39 T 12-10-2018 IPR007837 DNA damage-inducible protein DinB AMJ96_CH01514 6aaeb5a0966168ea805abe07d1d26f0f 169 SUPERFAMILY SSF109854 3 145 3.97E-36 T 12-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes AMJ96_CH01514 6aaeb5a0966168ea805abe07d1d26f0f 169 Gene3D G3DSA:1.20.120.450 1 163 9.6E-42 T 12-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes AMJ96_CH02897 dd841fd1a43756d1cd8fff3bb84a3c71 111 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 5 88 3.3E-8 T 12-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family AMJ96_CH02897 dd841fd1a43756d1cd8fff3bb84a3c71 111 Gene3D G3DSA:3.30.2310.20 1 98 3.7E-17 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily AMJ96_CH04359 89178ad8fa78aacc43ef2f76b65c5e87 291 Gene3D G3DSA:3.40.1190.20 4 291 8.9E-66 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_CH04359 89178ad8fa78aacc43ef2f76b65c5e87 291 Pfam PF08543 Phosphomethylpyrimidine kinase 99 259 3.7E-13 T 12-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AMJ96_CH04359 89178ad8fa78aacc43ef2f76b65c5e87 291 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 9 275 5.1E-48 T 12-10-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AMJ96_CH04359 89178ad8fa78aacc43ef2f76b65c5e87 291 SUPERFAMILY SSF53613 8 282 7.37E-57 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_CH04054 7f7f4b45100ddf7ddd24b0976a068ab0 369 Gene3D G3DSA:3.40.640.10 45 269 7.4E-104 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH04054 7f7f4b45100ddf7ddd24b0976a068ab0 369 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 9 365 55.333 T 12-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 AMJ96_CH04054 7f7f4b45100ddf7ddd24b0976a068ab0 369 Pfam PF00155 Aminotransferase class I and II 33 354 1.5E-51 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_CH04054 7f7f4b45100ddf7ddd24b0976a068ab0 369 Gene3D G3DSA:3.90.1150.10 17 355 7.4E-104 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH04054 7f7f4b45100ddf7ddd24b0976a068ab0 369 SUPERFAMILY SSF53383 9 364 8.43E-78 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH04054 7f7f4b45100ddf7ddd24b0976a068ab0 369 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 11 363 2.6E-87 T 12-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 AMJ96_CH04054 7f7f4b45100ddf7ddd24b0976a068ab0 369 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 221 230 - T 12-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 AMJ96_CH02089 d5e168908b9f8377eff6f271ace17d96 295 Pfam PF12833 Helix-turn-helix domain 213 291 2.8E-24 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH02089 d5e168908b9f8377eff6f271ace17d96 295 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 244 286 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AMJ96_CH02089 d5e168908b9f8377eff6f271ace17d96 295 Gene3D G3DSA:1.10.10.60 243 293 4.0E-17 T 12-10-2018 AMJ96_CH02089 d5e168908b9f8377eff6f271ace17d96 295 SMART SM00342 207 290 2.4E-34 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AMJ96_CH02089 d5e168908b9f8377eff6f271ace17d96 295 Gene3D G3DSA:1.10.10.60 188 242 7.0E-16 T 12-10-2018 AMJ96_CH02089 d5e168908b9f8377eff6f271ace17d96 295 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 274 290 3.3E-7 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_CH02089 d5e168908b9f8377eff6f271ace17d96 295 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 259 274 3.3E-7 T 12-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AMJ96_CH02089 d5e168908b9f8377eff6f271ace17d96 295 SUPERFAMILY SSF46689 190 241 2.02E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02089 d5e168908b9f8377eff6f271ace17d96 295 SUPERFAMILY SSF46689 243 291 4.44E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH01752 99ea5aa16306111ce34644754c1ff400 103 SUPERFAMILY SSF141099 4 102 1.7E-36 T 12-10-2018 IPR036488 Atu1913-like superfamily AMJ96_CH01752 99ea5aa16306111ce34644754c1ff400 103 Gene3D G3DSA:4.10.1210.10 1 102 6.6E-41 T 12-10-2018 IPR036488 Atu1913-like superfamily AMJ96_CH01752 99ea5aa16306111ce34644754c1ff400 103 Pfam PF08980 Domain of unknown function (DUF1883) 6 93 4.3E-40 T 12-10-2018 IPR015073 Domain of unknown function DUF1883 AMJ96_CH01032 fe33855d27b20078bb4b9aace95c7e16 317 SMART SM00849 54 230 6.5E-24 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH01032 fe33855d27b20078bb4b9aace95c7e16 317 Gene3D G3DSA:1.10.10.10 241 314 2.6E-8 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01032 fe33855d27b20078bb4b9aace95c7e16 317 SUPERFAMILY SSF56281 32 302 2.03E-54 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH01032 fe33855d27b20078bb4b9aace95c7e16 317 Pfam PF00753 Metallo-beta-lactamase superfamily 52 230 1.9E-21 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH01032 fe33855d27b20078bb4b9aace95c7e16 317 Gene3D G3DSA:3.60.15.10 31 235 2.5E-44 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_PC00189 28a29aa16264de070d7886c30c116074 446 SUPERFAMILY SSF53850 55 442 3.37E-68 T 12-10-2018 AMJ96_PC00189 28a29aa16264de070d7886c30c116074 446 Gene3D G3DSA:3.40.190.10 162 434 2.3E-86 T 12-10-2018 AMJ96_PC00189 28a29aa16264de070d7886c30c116074 446 Gene3D G3DSA:3.40.190.10 61 394 2.3E-86 T 12-10-2018 AMJ96_PC00189 28a29aa16264de070d7886c30c116074 446 Pfam PF01547 Bacterial extracellular solute-binding protein 62 353 1.6E-36 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PC00452 8f0d7f2a9945e2fb86aedbdea7f6cdce 270 Gene3D G3DSA:3.20.20.60 5 260 6.6E-58 T 12-10-2018 AMJ96_PC00452 8f0d7f2a9945e2fb86aedbdea7f6cdce 270 Pfam PF02548 Ketopantoate hydroxymethyltransferase 73 244 4.4E-40 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMJ96_PC00452 8f0d7f2a9945e2fb86aedbdea7f6cdce 270 PIRSF PIRSF000388 1 252 7.8E-73 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AMJ96_PC00452 8f0d7f2a9945e2fb86aedbdea7f6cdce 270 SUPERFAMILY SSF51621 7 248 4.4E-56 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMJ96_CH04115 1ed9b18ecab8b17f9afcc40e763854df 403 Pfam PF01757 Acyltransferase family 9 373 7.6E-28 T 12-10-2018 IPR002656 Acyltransferase 3 GO:0016747 AMJ96_CH00525 4330d24be509467b7ab5628e91a45a01 344 Gene3D G3DSA:3.40.190.10 112 283 7.3E-51 T 12-10-2018 AMJ96_CH00525 4330d24be509467b7ab5628e91a45a01 344 Gene3D G3DSA:3.40.190.10 26 310 7.3E-51 T 12-10-2018 AMJ96_CH00525 4330d24be509467b7ab5628e91a45a01 344 SUPERFAMILY SSF53850 19 339 1.61E-63 T 12-10-2018 AMJ96_CH00525 4330d24be509467b7ab5628e91a45a01 344 Pfam PF12849 PBP superfamily domain 21 310 1.4E-46 T 12-10-2018 IPR024370 PBP domain AMJ96_CH03746 bd6846ef0075cec5b649225fc1d799c5 426 SUPERFAMILY SSF103473 7 382 3.79E-43 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH03746 bd6846ef0075cec5b649225fc1d799c5 426 Gene3D G3DSA:1.20.1250.20 198 379 1.1E-20 T 12-10-2018 AMJ96_CH03746 bd6846ef0075cec5b649225fc1d799c5 426 Gene3D G3DSA:1.20.1250.20 2 190 5.3E-13 T 12-10-2018 AMJ96_CH03746 bd6846ef0075cec5b649225fc1d799c5 426 Pfam PF07690 Major Facilitator Superfamily 205 380 8.2E-17 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_PA00186 97b269a1b54cd8a1bfbb08d0c4219b39 260 SUPERFAMILY SSF52096 3 259 3.32E-72 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_PA00186 97b269a1b54cd8a1bfbb08d0c4219b39 260 Gene3D G3DSA:1.10.12.10 202 259 6.2E-14 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal AMJ96_PA00186 97b269a1b54cd8a1bfbb08d0c4219b39 260 Gene3D G3DSA:3.90.226.10 2 197 2.1E-56 T 12-10-2018 AMJ96_PA00186 97b269a1b54cd8a1bfbb08d0c4219b39 260 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 259 2.1E-58 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 AMJ96_CH00019 c2673abe85e2d09ef4158e1be7031b4a 252 Gene3D G3DSA:3.30.2010.10 155 242 9.2E-14 T 12-10-2018 AMJ96_CH00019 c2673abe85e2d09ef4158e1be7031b4a 252 Pfam PF01863 Protein of unknown function DUF45 41 242 6.1E-56 T 12-10-2018 IPR002725 Protein of unknown function DUF45 AMJ96_CH00796 6c6b6baecc265b7d3577490747f91784 356 SUPERFAMILY SSF102114 55 326 1.26E-38 T 12-10-2018 AMJ96_CH00796 6c6b6baecc265b7d3577490747f91784 356 Pfam PF04055 Radical SAM superfamily 64 196 3.1E-9 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMJ96_CH00796 6c6b6baecc265b7d3577490747f91784 356 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 63 74 - T 12-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMJ96_CH00796 6c6b6baecc265b7d3577490747f91784 356 Pfam PF13186 Iron-sulfur cluster-binding domain 257 324 6.5E-10 T 12-10-2018 IPR023885 4Fe4S-binding SPASM domain AMJ96_CH03807 0e117cdb43da78c572201e45922662f8 407 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 35 333 2.4E-108 T 12-10-2018 IPR011970 Lytic murein transglycosylase AMJ96_CH03807 0e117cdb43da78c572201e45922662f8 407 Gene3D G3DSA:1.10.530.10 78 328 3.8E-76 T 12-10-2018 AMJ96_CH03807 0e117cdb43da78c572201e45922662f8 407 Gene3D G3DSA:1.10.8.350 45 216 3.8E-76 T 12-10-2018 AMJ96_CH03807 0e117cdb43da78c572201e45922662f8 407 Pfam PF01471 Putative peptidoglycan binding domain 355 404 7.3E-10 T 12-10-2018 IPR002477 Peptidoglycan binding-like AMJ96_CH03807 0e117cdb43da78c572201e45922662f8 407 SUPERFAMILY SSF53955 24 335 6.75E-90 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily AMJ96_CH03807 0e117cdb43da78c572201e45922662f8 407 SUPERFAMILY SSF47090 351 406 1.81E-12 T 12-10-2018 IPR036365 PGBD-like superfamily AMJ96_CH03807 0e117cdb43da78c572201e45922662f8 407 Pfam PF13406 Transglycosylase SLT domain 35 329 9.8E-100 T 12-10-2018 IPR031304 Transglycosylase SLT domain 2 AMJ96_CH03807 0e117cdb43da78c572201e45922662f8 407 Gene3D G3DSA:1.10.101.10 352 406 2.2E-9 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMJ96_PD00249 b774deab7906b8206c657352f993f72e 40 Pfam PF08173 Membrane bound YbgT-like protein 1 26 1.5E-14 T 12-10-2018 IPR012994 Membrane bound YbgT-like AMJ96_PD00249 b774deab7906b8206c657352f993f72e 40 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 29 1.8E-19 T 12-10-2018 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 AMJ96_CH02489 2e4c840834b11fe7e263a81ad346170d 158 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 19 150 3.6E-19 T 12-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like AMJ96_CH02489 2e4c840834b11fe7e263a81ad346170d 158 Gene3D G3DSA:3.30.530.20 1 156 1.0E-39 T 12-10-2018 IPR023393 START-like domain superfamily AMJ96_CH02489 2e4c840834b11fe7e263a81ad346170d 158 SUPERFAMILY SSF55961 7 152 9.46E-32 T 12-10-2018 AMJ96_CH03810 81d940fb10522378271d6ef4e82b8bf3 484 SUPERFAMILY SSF46548 2 156 8.89E-37 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMJ96_CH03810 81d940fb10522378271d6ef4e82b8bf3 484 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 146 465 1.3E-22 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_CH03810 81d940fb10522378271d6ef4e82b8bf3 484 SUPERFAMILY SSF51971 144 403 7.65E-65 T 12-10-2018 AMJ96_CH03810 81d940fb10522378271d6ef4e82b8bf3 484 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 24 131 2.0E-25 T 12-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 AMJ96_CH03810 81d940fb10522378271d6ef4e82b8bf3 484 PRINTS PR00419 Adrenodoxin reductase family signature 147 169 4.8E-23 T 12-10-2018 AMJ96_CH03810 81d940fb10522378271d6ef4e82b8bf3 484 PRINTS PR00419 Adrenodoxin reductase family signature 170 183 4.8E-23 T 12-10-2018 AMJ96_CH03810 81d940fb10522378271d6ef4e82b8bf3 484 PRINTS PR00419 Adrenodoxin reductase family signature 212 222 4.8E-23 T 12-10-2018 AMJ96_CH03810 81d940fb10522378271d6ef4e82b8bf3 484 PRINTS PR00419 Adrenodoxin reductase family signature 292 306 4.8E-23 T 12-10-2018 AMJ96_CH03810 81d940fb10522378271d6ef4e82b8bf3 484 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 483 1.9E-184 T 12-10-2018 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 AMJ96_CH03810 81d940fb10522378271d6ef4e82b8bf3 484 Gene3D G3DSA:3.40.50.720 144 253 4.4E-14 T 12-10-2018 AMJ96_CH03810 81d940fb10522378271d6ef4e82b8bf3 484 Gene3D G3DSA:1.10.1060.10 8 143 1.1E-24 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMJ96_CH03810 81d940fb10522378271d6ef4e82b8bf3 484 Gene3D G3DSA:3.50.50.60 254 402 8.3E-31 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03810 81d940fb10522378271d6ef4e82b8bf3 484 SUPERFAMILY SSF51971 371 481 1.77E-9 T 12-10-2018 AMJ96_PC00291 306e88d1e472217aeb5e823bcdfeac33 329 Pfam PF02653 Branched-chain amino acid transport system / permease component 42 290 3.1E-36 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_PA00231 ecb2b0f69ee9946e1f38ee262347fee8 504 SUPERFAMILY SSF52540 271 485 1.01E-34 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00231 ecb2b0f69ee9946e1f38ee262347fee8 504 Gene3D G3DSA:3.40.50.300 1 233 7.3E-58 T 12-10-2018 AMJ96_PA00231 ecb2b0f69ee9946e1f38ee262347fee8 504 Gene3D G3DSA:3.40.50.300 260 491 9.0E-33 T 12-10-2018 AMJ96_PA00231 ecb2b0f69ee9946e1f38ee262347fee8 504 Pfam PF00005 ABC transporter 23 172 9.2E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00231 ecb2b0f69ee9946e1f38ee262347fee8 504 ProSitePatterns PS00211 ABC transporters family signature. 397 411 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PA00231 ecb2b0f69ee9946e1f38ee262347fee8 504 Pfam PF00005 ABC transporter 272 424 4.7E-9 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00231 ecb2b0f69ee9946e1f38ee262347fee8 504 SMART SM00382 280 473 3.4 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00231 ecb2b0f69ee9946e1f38ee262347fee8 504 SMART SM00382 32 209 1.2E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00231 ecb2b0f69ee9946e1f38ee262347fee8 504 SUPERFAMILY SSF52540 6 228 2.01E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03835 985defe3a0c6a2a2178a478ecd21e79c 460 SMART SM00387 350 460 5.8E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH03835 985defe3a0c6a2a2178a478ecd21e79c 460 SUPERFAMILY SSF47384 221 302 2.35E-11 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 AMJ96_CH03835 985defe3a0c6a2a2178a478ecd21e79c 460 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 356 447 2.7E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH03835 985defe3a0c6a2a2178a478ecd21e79c 460 Pfam PF00512 His Kinase A (phospho-acceptor) domain 239 302 7.7E-7 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH03835 985defe3a0c6a2a2178a478ecd21e79c 460 Gene3D G3DSA:3.30.565.10 309 457 8.6E-25 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH03835 985defe3a0c6a2a2178a478ecd21e79c 460 SUPERFAMILY SSF55874 294 447 5.89E-27 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH03835 985defe3a0c6a2a2178a478ecd21e79c 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 419 437 3.2E-6 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03835 985defe3a0c6a2a2178a478ecd21e79c 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 401 3.2E-6 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH03835 985defe3a0c6a2a2178a478ecd21e79c 460 Gene3D G3DSA:1.10.287.130 190 304 1.6E-14 T 12-10-2018 AMJ96_CH03835 985defe3a0c6a2a2178a478ecd21e79c 460 SMART SM00388 238 303 3.4E-8 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AMJ96_CH03835 985defe3a0c6a2a2178a478ecd21e79c 460 Pfam PF08521 Two-component sensor kinase N-terminal 20 162 2.3E-37 T 12-10-2018 IPR013727 Two-component sensor kinase, N-terminal AMJ96_CH00417 7740b70d3f8874ad9d0240270da59dc4 110 Pfam PF06305 Lipopolysaccharide assembly protein A domain 25 85 1.6E-5 T 12-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 AMJ96_CH02407 3fc702fb611af1088bfae18776581190 249 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 78 240 3.2E-10 T 12-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH02407 3fc702fb611af1088bfae18776581190 249 SUPERFAMILY SSF55681 30 241 2.3E-20 T 12-10-2018 AMJ96_CH02407 3fc702fb611af1088bfae18776581190 249 Gene3D G3DSA:3.30.930.10 8 243 5.6E-22 T 12-10-2018 AMJ96_CH04044 69ce1080bb6db918e26350f2901619df 180 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 13 176 9.7E-50 T 12-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 AMJ96_CH04044 69ce1080bb6db918e26350f2901619df 180 Gene3D G3DSA:3.40.50.2020 6 180 1.8E-56 T 12-10-2018 AMJ96_CH04044 69ce1080bb6db918e26350f2901619df 180 SUPERFAMILY SSF53271 11 178 7.08E-47 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like AMJ96_CH04044 69ce1080bb6db918e26350f2901619df 180 Pfam PF00156 Phosphoribosyl transferase domain 16 162 2.3E-25 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMJ96_PC00167 63e2ac8f5af385ca13065b97d8e5de48 300 Pfam PF00482 Type II secretion system (T2SS), protein F 161 289 2.4E-12 T 12-10-2018 IPR018076 Type II secretion system F domain AMJ96_CH00846 498a2b719830641aabc0df89e2404d81 231 SUPERFAMILY SSF53850 2 220 1.36E-50 T 12-10-2018 AMJ96_CH00846 498a2b719830641aabc0df89e2404d81 231 Gene3D G3DSA:3.40.190.10 4 229 1.2E-53 T 12-10-2018 AMJ96_CH00846 498a2b719830641aabc0df89e2404d81 231 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 165 186 - T 12-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 AMJ96_CH00846 498a2b719830641aabc0df89e2404d81 231 Gene3D G3DSA:3.40.190.10 97 203 1.2E-53 T 12-10-2018 AMJ96_CH00846 498a2b719830641aabc0df89e2404d81 231 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 3 207 8.3E-51 T 12-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 AMJ96_CH00846 498a2b719830641aabc0df89e2404d81 231 Pfam PF01634 ATP phosphoribosyltransferase 54 227 1.9E-39 T 12-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 AMJ96_CH03568 581c7980c8738fcfde3c89eea5265da3 302 Gene3D G3DSA:1.10.10.10 3 87 6.8E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03568 581c7980c8738fcfde3c89eea5265da3 302 Gene3D G3DSA:3.40.190.10 89 289 3.9E-59 T 12-10-2018 AMJ96_CH03568 581c7980c8738fcfde3c89eea5265da3 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.7E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03568 581c7980c8738fcfde3c89eea5265da3 302 SUPERFAMILY SSF53850 88 295 5.25E-44 T 12-10-2018 AMJ96_CH03568 581c7980c8738fcfde3c89eea5265da3 302 Pfam PF03466 LysR substrate binding domain 86 292 3.9E-42 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH03568 581c7980c8738fcfde3c89eea5265da3 302 SUPERFAMILY SSF46785 4 86 1.15E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03568 581c7980c8738fcfde3c89eea5265da3 302 Gene3D G3DSA:3.40.190.10 161 263 3.9E-59 T 12-10-2018 AMJ96_CH03024 998db33daf2248e74565509aab886ba5 145 Gene3D G3DSA:2.40.330.20 1 144 2.0E-23 T 12-10-2018 IPR038619 MraZ superfamily AMJ96_CH03024 998db33daf2248e74565509aab886ba5 145 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 7 117 2.0E-8 T 12-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 AMJ96_CH03024 998db33daf2248e74565509aab886ba5 145 Pfam PF02381 MraZ protein, putative antitoxin-like 82 133 1.8E-6 T 12-10-2018 IPR020603 MraZ domain AMJ96_CH03024 998db33daf2248e74565509aab886ba5 145 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 145 32.743 T 12-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 AMJ96_CH03024 998db33daf2248e74565509aab886ba5 145 SUPERFAMILY SSF89447 1 136 1.15E-31 T 12-10-2018 IPR037914 SpoVT-AbrB domain superfamily AMJ96_PB00156 297435ca025ae25b9f7021e68cbce55c 375 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 36 162 1.1E-28 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_PB00156 297435ca025ae25b9f7021e68cbce55c 375 Gene3D G3DSA:3.90.180.10 19 363 1.8E-121 T 12-10-2018 AMJ96_PB00156 297435ca025ae25b9f7021e68cbce55c 375 Gene3D G3DSA:3.40.50.720 181 317 1.8E-121 T 12-10-2018 AMJ96_PB00156 297435ca025ae25b9f7021e68cbce55c 375 SUPERFAMILY SSF51735 166 339 1.68E-43 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PB00156 297435ca025ae25b9f7021e68cbce55c 375 SMART SM00829 18 373 0.0025 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_PB00156 297435ca025ae25b9f7021e68cbce55c 375 SUPERFAMILY SSF50129 324 372 1.98E-5 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_PB00156 297435ca025ae25b9f7021e68cbce55c 375 Pfam PF00107 Zinc-binding dehydrogenase 204 333 3.6E-25 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_PB00156 297435ca025ae25b9f7021e68cbce55c 375 SUPERFAMILY SSF50129 18 200 1.4E-56 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_PB00156 297435ca025ae25b9f7021e68cbce55c 375 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 68 82 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMJ96_CH03472 2519f45c12d3ce09bf2d8e4330fac59e 264 Gene3D G3DSA:1.20.140.160 1 138 2.9E-46 T 12-10-2018 AMJ96_CH03472 2519f45c12d3ce09bf2d8e4330fac59e 264 SMART SM00448 140 250 3.0E-13 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03472 2519f45c12d3ce09bf2d8e4330fac59e 264 Gene3D G3DSA:3.40.50.2300 139 262 5.6E-30 T 12-10-2018 AMJ96_CH03472 2519f45c12d3ce09bf2d8e4330fac59e 264 Pfam PF00072 Response regulator receiver domain 142 246 1.9E-12 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03472 2519f45c12d3ce09bf2d8e4330fac59e 264 SUPERFAMILY SSF88659 89 136 2.88E-5 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_CH03472 2519f45c12d3ce09bf2d8e4330fac59e 264 SUPERFAMILY SSF52172 141 254 2.13E-22 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH03472 2519f45c12d3ce09bf2d8e4330fac59e 264 PIRSF PIRSF036400 1 264 2.0E-147 T 12-10-2018 IPR014605 Signal transduction response regulator PhyR-like, alphaproteobacteria AMJ96_CH02215 06432eb261b4ce320a85819bad0fc3a0 516 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 7 493 6.5E-155 T 12-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMJ96_CH02215 06432eb261b4ce320a85819bad0fc3a0 516 Hamap MF_01228 Methionine--tRNA ligase [metG]. 1 510 47.659 T 12-10-2018 IPR023457 Methionine-tRNA synthetase, type 2 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMJ96_CH02215 06432eb261b4ce320a85819bad0fc3a0 516 SUPERFAMILY SSF52374 4 356 3.22E-108 T 12-10-2018 AMJ96_CH02215 06432eb261b4ce320a85819bad0fc3a0 516 Gene3D G3DSA:1.10.730.10 342 513 2.4E-50 T 12-10-2018 AMJ96_CH02215 06432eb261b4ce320a85819bad0fc3a0 516 PRINTS PR01041 Methionyl-tRNA synthetase signature 89 100 9.1E-32 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMJ96_CH02215 06432eb261b4ce320a85819bad0fc3a0 516 PRINTS PR01041 Methionyl-tRNA synthetase signature 41 55 9.1E-32 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMJ96_CH02215 06432eb261b4ce320a85819bad0fc3a0 516 PRINTS PR01041 Methionyl-tRNA synthetase signature 353 364 9.1E-32 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMJ96_CH02215 06432eb261b4ce320a85819bad0fc3a0 516 PRINTS PR01041 Methionyl-tRNA synthetase signature 228 239 9.1E-32 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMJ96_CH02215 06432eb261b4ce320a85819bad0fc3a0 516 PRINTS PR01041 Methionyl-tRNA synthetase signature 9 22 9.1E-32 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMJ96_CH02215 06432eb261b4ce320a85819bad0fc3a0 516 PRINTS PR01041 Methionyl-tRNA synthetase signature 261 276 9.1E-32 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AMJ96_CH02215 06432eb261b4ce320a85819bad0fc3a0 516 Gene3D G3DSA:3.40.50.620 7 338 4.7E-154 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH02215 06432eb261b4ce320a85819bad0fc3a0 516 Pfam PF09334 tRNA synthetases class I (M) 7 365 8.8E-112 T 12-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH02215 06432eb261b4ce320a85819bad0fc3a0 516 Gene3D G3DSA:2.170.220.10 118 230 4.7E-154 T 12-10-2018 AMJ96_CH02215 06432eb261b4ce320a85819bad0fc3a0 516 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 16 25 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH02215 06432eb261b4ce320a85819bad0fc3a0 516 SUPERFAMILY SSF47323 354 510 1.44E-38 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_PD00539 af233124b2f3f82d460f832cb4f41ff4 265 SMART SM00382 33 216 2.0E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00539 af233124b2f3f82d460f832cb4f41ff4 265 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00539 af233124b2f3f82d460f832cb4f41ff4 265 SUPERFAMILY SSF52540 5 233 1.45E-69 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00539 af233124b2f3f82d460f832cb4f41ff4 265 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 24 254 1.6E-103 T 12-10-2018 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 AMJ96_PD00539 af233124b2f3f82d460f832cb4f41ff4 265 Gene3D G3DSA:3.40.50.300 2 252 2.5E-62 T 12-10-2018 AMJ96_PD00539 af233124b2f3f82d460f832cb4f41ff4 265 Pfam PF00005 ABC transporter 24 166 7.2E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00407 92d5870ae20f48f3f82cd3910158fcbf 272 Gene3D G3DSA:3.40.50.300 10 260 9.1E-64 T 12-10-2018 AMJ96_PD00407 92d5870ae20f48f3f82cd3910158fcbf 272 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00407 92d5870ae20f48f3f82cd3910158fcbf 272 SUPERFAMILY SSF52540 12 236 1.03E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00407 92d5870ae20f48f3f82cd3910158fcbf 272 SMART SM00382 40 219 5.4E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00407 92d5870ae20f48f3f82cd3910158fcbf 272 Pfam PF00005 ABC transporter 31 170 1.4E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00218 b40ab53117ac85fc4fba8604d97ab653 279 Gene3D G3DSA:1.25.40.10 50 148 1.2E-8 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH00218 b40ab53117ac85fc4fba8604d97ab653 279 Gene3D G3DSA:1.25.40.10 149 269 2.9E-15 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH00218 b40ab53117ac85fc4fba8604d97ab653 279 Pfam PF07721 Tetratricopeptide repeat 216 236 0.32 T 12-10-2018 IPR011717 Tetratricopeptide TPR-4 GO:0042802 AMJ96_CH00218 b40ab53117ac85fc4fba8604d97ab653 279 PIRSF PIRSF035836 3 272 1.8E-118 T 12-10-2018 IPR014596 Uncharacterised conserved protein UCP035836 AMJ96_CH00218 b40ab53117ac85fc4fba8604d97ab653 279 SUPERFAMILY SSF48452 57 239 3.67E-22 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_PB00345 2ded86f5f5de9091ee29ef16425639c8 297 SUPERFAMILY SSF52540 5 282 6.2E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PB00345 2ded86f5f5de9091ee29ef16425639c8 297 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 5 276 2.2E-133 T 12-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 AMJ96_PB00345 2ded86f5f5de9091ee29ef16425639c8 297 Hamap MF_00533 Nitrogenase iron protein [nifH]. 4 277 53.161 T 12-10-2018 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 AMJ96_PB00345 2ded86f5f5de9091ee29ef16425639c8 297 ProSitePatterns PS00746 NifH/frxC family signature 1. 89 101 - T 12-10-2018 IPR030655 NifH/chlL conserved site AMJ96_PB00345 2ded86f5f5de9091ee29ef16425639c8 297 PRINTS PR00091 Nitrogenase component II signature 10 23 9.6E-38 T 12-10-2018 AMJ96_PB00345 2ded86f5f5de9091ee29ef16425639c8 297 PRINTS PR00091 Nitrogenase component II signature 87 101 9.6E-38 T 12-10-2018 AMJ96_PB00345 2ded86f5f5de9091ee29ef16425639c8 297 PRINTS PR00091 Nitrogenase component II signature 125 140 9.6E-38 T 12-10-2018 AMJ96_PB00345 2ded86f5f5de9091ee29ef16425639c8 297 PRINTS PR00091 Nitrogenase component II signature 32 47 9.6E-38 T 12-10-2018 AMJ96_PB00345 2ded86f5f5de9091ee29ef16425639c8 297 PIRSF PIRSF000363 3 279 8.4E-120 T 12-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 AMJ96_PB00345 2ded86f5f5de9091ee29ef16425639c8 297 TIGRFAM TIGR01287 nifH: nitrogenase iron protein 5 279 6.5E-136 T 12-10-2018 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 AMJ96_PB00345 2ded86f5f5de9091ee29ef16425639c8 297 Gene3D G3DSA:3.40.50.300 3 278 3.3E-66 T 12-10-2018 AMJ96_PB00345 2ded86f5f5de9091ee29ef16425639c8 297 ProSitePatterns PS00692 NifH/frxC family signature 2. 126 139 - T 12-10-2018 IPR030655 NifH/chlL conserved site AMJ96_CH01447 32c71e1c04dc36a13d6e58821f37c82d 190 SUPERFAMILY SSF109604 1 181 9.42E-56 T 12-10-2018 AMJ96_CH01447 32c71e1c04dc36a13d6e58821f37c82d 190 Gene3D G3DSA:1.10.3210.10 1 188 1.3E-60 T 12-10-2018 AMJ96_CH01447 32c71e1c04dc36a13d6e58821f37c82d 190 Pfam PF13023 HD domain 31 99 6.3E-5 T 12-10-2018 IPR006674 HD domain AMJ96_CH03531 555655ef06871944c2848eb4d187e19e 541 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 247 537 4.4E-130 T 12-10-2018 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type AMJ96_CH03531 555655ef06871944c2848eb4d187e19e 541 Pfam PF02653 Branched-chain amino acid transport system / permease component 251 523 1.9E-53 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03377 c5edf7610bac10564a2f9ef4203a84f9 229 Pfam PF00857 Isochorismatase family 13 170 8.4E-25 T 12-10-2018 IPR000868 Isochorismatase-like GO:0003824 AMJ96_CH03377 c5edf7610bac10564a2f9ef4203a84f9 229 Gene3D G3DSA:3.40.50.850 2 209 4.9E-44 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMJ96_CH03377 c5edf7610bac10564a2f9ef4203a84f9 229 SUPERFAMILY SSF52499 2 209 2.35E-41 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMJ96_PA00072 ba7f885ed8369ad376d447a93c31d0cf 357 SUPERFAMILY SSF111369 50 262 6.67E-20 T 12-10-2018 AMJ96_PA00072 ba7f885ed8369ad376d447a93c31d0cf 357 Pfam PF13533 Biotin-lipoyl like 64 109 1.1E-6 T 12-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain AMJ96_PA00072 ba7f885ed8369ad376d447a93c31d0cf 357 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 36 353 1.4E-61 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMJ96_PA00072 ba7f885ed8369ad376d447a93c31d0cf 357 Gene3D G3DSA:2.40.420.20 39 338 2.1E-55 T 12-10-2018 AMJ96_PA00072 ba7f885ed8369ad376d447a93c31d0cf 357 Pfam PF13437 HlyD family secretion protein 173 264 8.0E-12 T 12-10-2018 AMJ96_PA00072 ba7f885ed8369ad376d447a93c31d0cf 357 Gene3D G3DSA:2.40.50.100 61 202 2.1E-55 T 12-10-2018 AMJ96_PA00072 ba7f885ed8369ad376d447a93c31d0cf 357 Gene3D G3DSA:1.10.287.470 100 169 2.1E-55 T 12-10-2018 AMJ96_PA00072 ba7f885ed8369ad376d447a93c31d0cf 357 Gene3D G3DSA:2.40.30.170 47 279 2.1E-55 T 12-10-2018 AMJ96_PA00194 9be1ca587b49e168dcbcd994be0164cb 303 Pfam PF07859 alpha/beta hydrolase fold 81 277 1.5E-58 T 12-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 AMJ96_PA00194 9be1ca587b49e168dcbcd994be0164cb 303 Gene3D G3DSA:3.40.50.1820 7 295 9.6E-67 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PA00194 9be1ca587b49e168dcbcd994be0164cb 303 SUPERFAMILY SSF53474 20 298 1.27E-52 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PA00194 9be1ca587b49e168dcbcd994be0164cb 303 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 81 97 - T 12-10-2018 IPR002168 Lipase, GDXG, putative histidine active site GO:0016787 Reactome: R-HSA-163560 AMJ96_CH00719 dbf018e4aca1b82ae3560f09caec52f2 180 SUPERFAMILY SSF53955 22 163 2.28E-21 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily AMJ96_CH00719 dbf018e4aca1b82ae3560f09caec52f2 180 Pfam PF01464 Transglycosylase SLT domain 25 155 3.6E-9 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 AMJ96_CH00719 dbf018e4aca1b82ae3560f09caec52f2 180 Gene3D G3DSA:1.10.530.10 22 166 2.5E-13 T 12-10-2018 AMJ96_CH00619 69b5fe44b946835c2af70682eb857c76 161 SMART SM00226 17 153 9.6E-8 T 12-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMJ96_CH00619 69b5fe44b946835c2af70682eb857c76 161 Gene3D G3DSA:3.40.50.2300 16 152 1.3E-26 T 12-10-2018 AMJ96_CH00619 69b5fe44b946835c2af70682eb857c76 161 SUPERFAMILY SSF52788 19 147 7.2E-29 T 12-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily AMJ96_CH00619 69b5fe44b946835c2af70682eb857c76 161 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 19 108 4.6E-12 T 12-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMJ96_PD00622 b73f3641d9a2e0c3871eb34d13d9bd35 373 Gene3D G3DSA:1.10.3720.10 154 368 2.3E-19 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00622 b73f3641d9a2e0c3871eb34d13d9bd35 373 SUPERFAMILY SSF161098 161 357 5.36E-21 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00622 b73f3641d9a2e0c3871eb34d13d9bd35 373 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 183 370 1.8E-26 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00622 b73f3641d9a2e0c3871eb34d13d9bd35 373 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 18 70 2.7E-10 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMJ96_CH03840 5aee9fdb23bae87bac1b2d1871b9bb26 820 SUPERFAMILY SSF53756 19 818 0.0 T 12-10-2018 AMJ96_CH03840 5aee9fdb23bae87bac1b2d1871b9bb26 820 Pfam PF00343 Carbohydrate phosphorylase 108 818 0.0 T 12-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AMJ96_CH03840 5aee9fdb23bae87bac1b2d1871b9bb26 820 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 664 676 - T 12-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AMJ96_CH03840 5aee9fdb23bae87bac1b2d1871b9bb26 820 Gene3D G3DSA:3.40.50.2000 486 812 0.0 T 12-10-2018 AMJ96_CH03840 5aee9fdb23bae87bac1b2d1871b9bb26 820 Gene3D G3DSA:3.40.50.2000 29 818 0.0 T 12-10-2018 AMJ96_CH03840 5aee9fdb23bae87bac1b2d1871b9bb26 820 PIRSF PIRSF000460 7 820 8.6E-226 T 12-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AMJ96_CH03840 5aee9fdb23bae87bac1b2d1871b9bb26 820 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 21 818 0.0 T 12-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AMJ96_PB00049 b7c0a972c61091619ee73f0907f1b2dc 178 Pfam PF04972 BON domain 109 175 2.6E-12 T 12-10-2018 IPR007055 BON domain AMJ96_PD00274 4e47ba630dab45120e7fbfb6723c234b 220 Gene3D G3DSA:1.10.3720.10 3 217 9.6E-46 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00274 4e47ba630dab45120e7fbfb6723c234b 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 216 7.0E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00274 4e47ba630dab45120e7fbfb6723c234b 220 SUPERFAMILY SSF161098 16 202 2.49E-35 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00274 4e47ba630dab45120e7fbfb6723c234b 220 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 111 1.5E-26 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_CH00145 b25aa7e1e888e0094a01fbb0269e420a 272 Gene3D G3DSA:3.40.50.720 21 271 1.0E-74 T 12-10-2018 AMJ96_CH00145 b25aa7e1e888e0094a01fbb0269e420a 272 SUPERFAMILY SSF69572 18 266 2.88E-76 T 12-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 AMJ96_CH00145 b25aa7e1e888e0094a01fbb0269e420a 272 Pfam PF00899 ThiF family 29 267 3.7E-55 T 12-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AMJ96_CH03500 ee0bc840838aecd09d0605773798a97b 697 Pfam PF13361 UvrD-like helicase C-terminal domain 619 684 5.2E-14 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AMJ96_CH03500 ee0bc840838aecd09d0605773798a97b 697 Gene3D G3DSA:3.30.2310.20 1 87 1.7E-6 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily AMJ96_CH03500 ee0bc840838aecd09d0605773798a97b 697 SUPERFAMILY SSF143011 1 81 6.15E-7 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily AMJ96_CH03500 ee0bc840838aecd09d0605773798a97b 697 SUPERFAMILY SSF52540 230 687 1.94E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03500 ee0bc840838aecd09d0605773798a97b 697 Pfam PF13245 AAA domain 243 484 7.0E-14 T 12-10-2018 AMJ96_CH03500 ee0bc840838aecd09d0605773798a97b 697 Gene3D G3DSA:3.40.50.300 506 697 5.5E-27 T 12-10-2018 AMJ96_CH00489 54e9b779ab4ab742ff54868104ef6cb3 348 ProSitePatterns PS00482 Dihydroorotase signature 1. 11 19 - T 12-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH00489 54e9b779ab4ab742ff54868104ef6cb3 348 ProSitePatterns PS00483 Dihydroorotase signature 2. 245 256 - T 12-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH00489 54e9b779ab4ab742ff54868104ef6cb3 348 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 4 344 2.0E-126 T 12-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH00489 54e9b779ab4ab742ff54868104ef6cb3 348 PIRSF PIRSF001237 1 347 8.2E-136 T 12-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH00489 54e9b779ab4ab742ff54868104ef6cb3 348 Hamap MF_00219 Dihydroorotase [pyrC]. 2 345 46.126 T 12-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AMJ96_CH00489 54e9b779ab4ab742ff54868104ef6cb3 348 Gene3D G3DSA:3.20.20.140 2 345 2.9E-99 T 12-10-2018 AMJ96_CH00489 54e9b779ab4ab742ff54868104ef6cb3 348 SUPERFAMILY SSF51556 1 344 4.54E-139 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_CH00489 54e9b779ab4ab742ff54868104ef6cb3 348 Pfam PF01979 Amidohydrolase family 11 327 3.7E-16 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMJ96_CH03846 aa968697b376809f0a242e1a9b28a2e9 162 Pfam PF01575 MaoC like domain 13 116 2.3E-23 T 12-10-2018 IPR002539 MaoC-like dehydratase domain AMJ96_CH03846 aa968697b376809f0a242e1a9b28a2e9 162 Gene3D G3DSA:3.10.129.10 5 151 8.4E-40 T 12-10-2018 AMJ96_CH03846 aa968697b376809f0a242e1a9b28a2e9 162 SUPERFAMILY SSF54637 8 149 3.29E-33 T 12-10-2018 IPR029069 HotDog domain superfamily AMJ96_PA00241 70ab727f657d1a1948a0b1b5e9ad52be 341 SUPERFAMILY SSF51735 3 150 1.07E-37 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PA00241 70ab727f657d1a1948a0b1b5e9ad52be 341 Gene3D G3DSA:3.30.360.10 141 263 1.7E-97 T 12-10-2018 AMJ96_PA00241 70ab727f657d1a1948a0b1b5e9ad52be 341 SUPERFAMILY SSF55347 130 287 4.58E-14 T 12-10-2018 AMJ96_PA00241 70ab727f657d1a1948a0b1b5e9ad52be 341 Gene3D G3DSA:3.40.50.720 5 312 1.7E-97 T 12-10-2018 AMJ96_PA00241 70ab727f657d1a1948a0b1b5e9ad52be 341 Hamap MF_01671 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase [iolG]. 1 333 45.084 T 12-10-2018 IPR023794 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase GO:0019310|GO:0050112|GO:0055114 KEGG: 00521+1.1.1.18|KEGG: 00562+1.1.1.18|MetaCyc: PWY-5940|MetaCyc: PWY-7237|MetaCyc: PWY-7241 AMJ96_PA00241 70ab727f657d1a1948a0b1b5e9ad52be 341 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 121 1.2E-24 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_PC00062 41766c6d7bc67b3df873732dfe7233ef 250 Gene3D G3DSA:3.20.20.370 5 249 3.8E-12 T 12-10-2018 AMJ96_PC00062 41766c6d7bc67b3df873732dfe7233ef 250 SUPERFAMILY SSF88713 27 232 1.28E-12 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMJ96_PC00062 41766c6d7bc67b3df873732dfe7233ef 250 Pfam PF01522 Polysaccharide deacetylase 37 153 2.7E-6 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMJ96_CH00360 19cc572269405799e29377dd72184036 128 SUPERFAMILY SSF54593 3 124 8.46E-27 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH00360 19cc572269405799e29377dd72184036 128 Gene3D G3DSA:3.10.180.10 8 126 1.3E-41 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH00360 19cc572269405799e29377dd72184036 128 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 123 3.6E-11 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_PC00257 bc051d61eac1709e11d89f340e75525c 276 SUPERFAMILY SSF161098 2 276 4.67E-72 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00257 bc051d61eac1709e11d89f340e75525c 276 Gene3D G3DSA:1.10.3720.10 2 263 2.2E-59 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00257 bc051d61eac1709e11d89f340e75525c 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 270 2.0E-23 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03776 8f82cd5f4460e53c068ad7c56697b5a8 164 SUPERFAMILY SSF52255 6 161 3.53E-66 T 12-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 AMJ96_CH03776 8f82cd5f4460e53c068ad7c56697b5a8 164 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 7 158 1.1E-65 T 12-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AMJ96_CH03776 8f82cd5f4460e53c068ad7c56697b5a8 164 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 7 160 32.389 T 12-10-2018 IPR033747 Class I PurE AMJ96_CH03776 8f82cd5f4460e53c068ad7c56697b5a8 164 SMART SM01001 5 156 8.6E-102 T 12-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AMJ96_CH03776 8f82cd5f4460e53c068ad7c56697b5a8 164 Pfam PF00731 AIR carboxylase 7 153 6.5E-64 T 12-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AMJ96_CH03776 8f82cd5f4460e53c068ad7c56697b5a8 164 Gene3D G3DSA:3.40.50.7700 1 163 2.8E-71 T 12-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 AMJ96_CH03776 8f82cd5f4460e53c068ad7c56697b5a8 164 PIRSF PIRSF001338 2 163 6.8E-66 T 12-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 AMJ96_PB00128 3db1a7a90acc12241c86e5ac925d3f10 284 Pfam PF07729 FCD domain 145 268 2.4E-25 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PB00128 3db1a7a90acc12241c86e5ac925d3f10 284 Gene3D G3DSA:1.20.120.530 138 283 5.2E-28 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PB00128 3db1a7a90acc12241c86e5ac925d3f10 284 SUPERFAMILY SSF46785 69 142 1.14E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PB00128 3db1a7a90acc12241c86e5ac925d3f10 284 SUPERFAMILY SSF48008 141 277 4.71E-23 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PB00128 3db1a7a90acc12241c86e5ac925d3f10 284 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 109 125 1.2E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PB00128 3db1a7a90acc12241c86e5ac925d3f10 284 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 95 109 1.2E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PB00128 3db1a7a90acc12241c86e5ac925d3f10 284 Pfam PF00392 Bacterial regulatory proteins, gntR family 75 135 2.5E-20 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PB00128 3db1a7a90acc12241c86e5ac925d3f10 284 Gene3D G3DSA:1.10.10.10 69 136 2.7E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PB00128 3db1a7a90acc12241c86e5ac925d3f10 284 SMART SM00895 145 269 1.4E-18 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PB00128 3db1a7a90acc12241c86e5ac925d3f10 284 SMART SM00345 77 135 5.4E-22 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH04166 0e8563b299b95047d610beca3cdecc3c 695 Gene3D G3DSA:1.10.1370.10 149 615 7.0E-225 T 12-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 AMJ96_CH04166 0e8563b299b95047d610beca3cdecc3c 695 SUPERFAMILY SSF55486 18 679 3.66E-182 T 12-10-2018 AMJ96_CH04166 0e8563b299b95047d610beca3cdecc3c 695 Pfam PF01432 Peptidase family M3 233 681 1.8E-119 T 12-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 AMJ96_CH04166 0e8563b299b95047d610beca3cdecc3c 695 Gene3D G3DSA:1.10.1370.40 22 680 7.0E-225 T 12-10-2018 AMJ96_CH02441 15442277d19ca0df329668e39d39838b 234 Gene3D G3DSA:3.40.50.1000 9 212 2.9E-54 T 12-10-2018 IPR023214 HAD superfamily AMJ96_CH02441 15442277d19ca0df329668e39d39838b 234 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 9 218 8.2E-50 T 12-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 AMJ96_CH02441 15442277d19ca0df329668e39d39838b 234 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 192 2.6E-34 T 12-10-2018 AMJ96_CH02441 15442277d19ca0df329668e39d39838b 234 SUPERFAMILY SSF56784 8 220 5.2E-54 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_CH02441 15442277d19ca0df329668e39d39838b 234 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 107 185 1.0E-6 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH02441 15442277d19ca0df329668e39d39838b 234 Gene3D G3DSA:1.10.150.240 21 91 2.9E-54 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMJ96_CH02441 15442277d19ca0df329668e39d39838b 234 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 105 118 1.2E-5 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH02441 15442277d19ca0df329668e39d39838b 234 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 6 17 1.2E-5 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH02441 15442277d19ca0df329668e39d39838b 234 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 136 152 1.2E-5 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH02441 15442277d19ca0df329668e39d39838b 234 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 6 221 33.499 T 12-10-2018 IPR037512 Phosphoglycolate phosphatase, prokaryotic GO:0005975|GO:0008967 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 AMJ96_CH00134 e3519a15a97abf81b4e61fa8113a7db8 231 SUPERFAMILY SSF46785 3 64 2.57E-10 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00134 e3519a15a97abf81b4e61fa8113a7db8 231 Gene3D G3DSA:1.10.10.10 1 66 1.1E-16 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00134 e3519a15a97abf81b4e61fa8113a7db8 231 Pfam PF13280 WYL domain 139 225 1.6E-10 T 12-10-2018 IPR026881 WYL domain AMJ96_CH00134 e3519a15a97abf81b4e61fa8113a7db8 231 Pfam PF08279 HTH domain 8 61 1.5E-14 T 12-10-2018 IPR013196 Helix-turn-helix, type 11 AMJ96_PD00482 19e21977514b7bfb8d480856788e8658 238 SUPERFAMILY SSF46785 8 71 1.29E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00482 19e21977514b7bfb8d480856788e8658 238 Gene3D G3DSA:1.10.10.10 4 67 5.4E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00482 19e21977514b7bfb8d480856788e8658 238 Pfam PF07729 FCD domain 85 205 2.3E-15 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00482 19e21977514b7bfb8d480856788e8658 238 Gene3D G3DSA:1.20.120.530 81 212 8.3E-15 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00482 19e21977514b7bfb8d480856788e8658 238 SUPERFAMILY SSF48008 88 211 9.15E-13 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00482 19e21977514b7bfb8d480856788e8658 238 SMART SM00895 77 206 1.4E-7 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00482 19e21977514b7bfb8d480856788e8658 238 SMART SM00345 9 67 1.2E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00482 19e21977514b7bfb8d480856788e8658 238 Pfam PF00392 Bacterial regulatory proteins, gntR family 7 67 8.4E-12 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH04320 c2e3b309e04c40ae7cca30bf9fa0fd41 195 SUPERFAMILY SSF55729 18 179 1.06E-31 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH04320 c2e3b309e04c40ae7cca30bf9fa0fd41 195 Gene3D G3DSA:3.40.630.30 4 171 3.8E-33 T 12-10-2018 AMJ96_CH04320 c2e3b309e04c40ae7cca30bf9fa0fd41 195 Pfam PF13302 Acetyltransferase (GNAT) domain 26 161 3.7E-26 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH00905 e10156d3878ef71d955efd62d93ca36b 420 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 12 278 8.0E-62 T 12-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AMJ96_CH00905 e10156d3878ef71d955efd62d93ca36b 420 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 287 409 5.2E-29 T 12-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AMJ96_CH00905 e10156d3878ef71d955efd62d93ca36b 420 ProSitePatterns PS00104 EPSP synthase signature 1. 91 105 - T 12-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AMJ96_CH00905 e10156d3878ef71d955efd62d93ca36b 420 Gene3D G3DSA:3.65.10.10 26 244 1.5E-110 T 12-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AMJ96_CH00905 e10156d3878ef71d955efd62d93ca36b 420 Gene3D G3DSA:3.65.10.10 19 405 1.5E-110 T 12-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 AMJ96_CH00905 e10156d3878ef71d955efd62d93ca36b 420 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 14 415 27.151 T 12-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AMJ96_CH00905 e10156d3878ef71d955efd62d93ca36b 420 PIRSF PIRSF000505 4 417 5.4E-120 T 12-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AMJ96_CH00905 e10156d3878ef71d955efd62d93ca36b 420 SUPERFAMILY SSF55205 7 414 1.44E-96 T 12-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AMJ96_CH00988 557e07ec73d71af4caeba28b0ce96462 201 SUPERFAMILY SSF143456 15 201 2.35E-62 T 12-10-2018 AMJ96_CH00988 557e07ec73d71af4caeba28b0ce96462 201 Gene3D G3DSA:3.40.1740.10 11 201 2.4E-66 T 12-10-2018 AMJ96_CH00988 557e07ec73d71af4caeba28b0ce96462 201 Pfam PF02622 Uncharacterized ACR, COG1678 24 188 5.3E-45 T 12-10-2018 IPR003774 Protein of unknown function UPF0301 AMJ96_CH00988 557e07ec73d71af4caeba28b0ce96462 201 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 13 201 37.14 T 12-10-2018 IPR003774 Protein of unknown function UPF0301 AMJ96_PC00408 85aaacf88feb4f1205a085e5496efb2c 513 Gene3D G3DSA:1.20.1720.10 21 227 2.8E-37 T 12-10-2018 AMJ96_PC00408 85aaacf88feb4f1205a085e5496efb2c 513 Pfam PF07690 Major Facilitator Superfamily 25 417 9.0E-42 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_PC00408 85aaacf88feb4f1205a085e5496efb2c 513 Gene3D G3DSA:1.20.1250.20 269 461 3.3E-12 T 12-10-2018 AMJ96_PC00408 85aaacf88feb4f1205a085e5496efb2c 513 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 21 506 7.2E-115 T 12-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 AMJ96_PC00408 85aaacf88feb4f1205a085e5496efb2c 513 SUPERFAMILY SSF103473 18 507 2.75E-57 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH04252 31f9c8d8c5a34844a5efeee8b0d6c37f 190 Pfam PF03358 NADPH-dependent FMN reductase 5 139 1.3E-28 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMJ96_CH04252 31f9c8d8c5a34844a5efeee8b0d6c37f 190 SUPERFAMILY SSF52218 5 175 4.19E-31 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_CH04252 31f9c8d8c5a34844a5efeee8b0d6c37f 190 Gene3D G3DSA:3.40.50.360 1 190 5.1E-40 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_CH03767 819a258b74a4863c1a2c4dc5a143da6c 122 SMART SM00448 3 116 1.9E-36 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03767 819a258b74a4863c1a2c4dc5a143da6c 122 SUPERFAMILY SSF52172 3 121 4.55E-37 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH03767 819a258b74a4863c1a2c4dc5a143da6c 122 Pfam PF00072 Response regulator receiver domain 5 116 8.4E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03767 819a258b74a4863c1a2c4dc5a143da6c 122 Gene3D G3DSA:3.40.50.12740 1 122 2.0E-38 T 12-10-2018 AMJ96_PB00310 6416fea5f054529894ad9ecfe709d791 68 Pfam PF12838 4Fe-4S dicluster domain 9 57 2.6E-8 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AMJ96_PB00310 6416fea5f054529894ad9ecfe709d791 68 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 10 21 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMJ96_PB00310 6416fea5f054529894ad9ecfe709d791 68 Gene3D G3DSA:3.30.70.20 4 68 7.0E-21 T 12-10-2018 AMJ96_PB00310 6416fea5f054529894ad9ecfe709d791 68 SUPERFAMILY SSF54862 5 58 1.03E-14 T 12-10-2018 AMJ96_CH03571 1412b6a277356e56054d72fc454e075c 513 Gene3D G3DSA:1.20.1720.10 19 257 5.3E-54 T 12-10-2018 AMJ96_CH03571 1412b6a277356e56054d72fc454e075c 513 Pfam PF07690 Major Facilitator Superfamily 22 414 1.0E-58 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH03571 1412b6a277356e56054d72fc454e075c 513 PRINTS PR01036 Tetracycline resistance protein TetB signature 207 225 1.1E-6 T 12-10-2018 AMJ96_CH03571 1412b6a277356e56054d72fc454e075c 513 PRINTS PR01036 Tetracycline resistance protein TetB signature 405 424 1.1E-6 T 12-10-2018 AMJ96_CH03571 1412b6a277356e56054d72fc454e075c 513 PRINTS PR01036 Tetracycline resistance protein TetB signature 21 45 1.1E-6 T 12-10-2018 AMJ96_CH03571 1412b6a277356e56054d72fc454e075c 513 PRINTS PR01036 Tetracycline resistance protein TetB signature 142 166 1.1E-6 T 12-10-2018 AMJ96_CH03571 1412b6a277356e56054d72fc454e075c 513 PRINTS PR01036 Tetracycline resistance protein TetB signature 112 132 1.1E-6 T 12-10-2018 AMJ96_CH03571 1412b6a277356e56054d72fc454e075c 513 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 19 491 1.6E-124 T 12-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 AMJ96_CH03571 1412b6a277356e56054d72fc454e075c 513 SUPERFAMILY SSF103473 9 425 1.7E-70 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH03571 1412b6a277356e56054d72fc454e075c 513 Gene3D G3DSA:1.20.1250.20 270 502 7.2E-19 T 12-10-2018 AMJ96_CH00874 d77476b5cfd602e936e3177d0b24728b 295 SUPERFAMILY SSF63829 15 289 1.96E-56 T 12-10-2018 AMJ96_CH00874 d77476b5cfd602e936e3177d0b24728b 295 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 19 260 1.5E-66 T 12-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region AMJ96_CH00874 d77476b5cfd602e936e3177d0b24728b 295 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 242 260 3.4E-28 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_CH00874 d77476b5cfd602e936e3177d0b24728b 295 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 136 158 3.4E-28 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_CH00874 d77476b5cfd602e936e3177d0b24728b 295 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 200 217 3.4E-28 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_CH00874 d77476b5cfd602e936e3177d0b24728b 295 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 20 37 3.4E-28 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_CH00874 d77476b5cfd602e936e3177d0b24728b 295 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 159 179 3.4E-28 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_CH00874 d77476b5cfd602e936e3177d0b24728b 295 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 96 117 3.4E-28 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_CH00874 d77476b5cfd602e936e3177d0b24728b 295 Gene3D G3DSA:2.120.10.30 2 295 5.4E-97 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMJ96_CH04214 5f6d61f61f8bb4e38e900dcfdeed788b 276 PIRSF PIRSF000097 112 272 1.7E-47 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH04214 5f6d61f61f8bb4e38e900dcfdeed788b 276 PIRSF PIRSF000097 1 116 1.3E-38 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH04214 5f6d61f61f8bb4e38e900dcfdeed788b 276 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 229 244 - T 12-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AMJ96_CH04214 5f6d61f61f8bb4e38e900dcfdeed788b 276 Pfam PF00248 Aldo/keto reductase family 18 260 1.1E-45 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_CH04214 5f6d61f61f8bb4e38e900dcfdeed788b 276 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 125 142 - T 12-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AMJ96_CH04214 5f6d61f61f8bb4e38e900dcfdeed788b 276 Gene3D G3DSA:3.20.20.100 1 276 2.3E-111 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH04214 5f6d61f61f8bb4e38e900dcfdeed788b 276 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 41 58 - T 12-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AMJ96_CH04214 5f6d61f61f8bb4e38e900dcfdeed788b 276 SUPERFAMILY SSF51430 5 270 7.33E-91 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH04214 5f6d61f61f8bb4e38e900dcfdeed788b 276 PRINTS PR00069 Aldo-keto reductase signature 37 61 3.5E-43 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH04214 5f6d61f61f8bb4e38e900dcfdeed788b 276 PRINTS PR00069 Aldo-keto reductase signature 125 142 3.5E-43 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH04214 5f6d61f61f8bb4e38e900dcfdeed788b 276 PRINTS PR00069 Aldo-keto reductase signature 159 188 3.5E-43 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH04214 5f6d61f61f8bb4e38e900dcfdeed788b 276 PRINTS PR00069 Aldo-keto reductase signature 93 111 3.5E-43 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH04214 5f6d61f61f8bb4e38e900dcfdeed788b 276 PRINTS PR00069 Aldo-keto reductase signature 196 220 3.5E-43 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_PD00094 1b6e9c6f9dc81b186c56ccdd23f3c508 273 Pfam PF06724 Domain of Unknown Function (DUF1206) 96 164 5.7E-11 T 12-10-2018 IPR009597 Domain of unknown function DUF1206 AMJ96_PD00094 1b6e9c6f9dc81b186c56ccdd23f3c508 273 Pfam PF06724 Domain of Unknown Function (DUF1206) 14 77 8.8E-16 T 12-10-2018 IPR009597 Domain of unknown function DUF1206 AMJ96_PD00094 1b6e9c6f9dc81b186c56ccdd23f3c508 273 Pfam PF06724 Domain of Unknown Function (DUF1206) 186 254 5.7E-18 T 12-10-2018 IPR009597 Domain of unknown function DUF1206 AMJ96_PB00116 e2450f8670c4850ce7748f45792ad31c 190 Pfam PF14232 Domain of unknown function (DUF4334) 86 124 8.9E-14 T 12-10-2018 IPR025568 Domain of unknown function DUF4334 AMJ96_PB00116 e2450f8670c4850ce7748f45792ad31c 190 Gene3D G3DSA:2.40.128.580 4 143 7.3E-17 T 12-10-2018 AMJ96_PD00547 0e2185d9d4450f94b253c4201d440e9d 218 SUPERFAMILY SSF88946 17 89 3.18E-7 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_PD00547 0e2185d9d4450f94b253c4201d440e9d 218 SUPERFAMILY SSF88659 98 166 4.36E-9 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_PD00547 0e2185d9d4450f94b253c4201d440e9d 218 Pfam PF08281 Sigma-70, region 4 114 165 3.4E-9 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_PD00547 0e2185d9d4450f94b253c4201d440e9d 218 Pfam PF04542 Sigma-70 region 2 20 80 1.0E-4 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_PD00547 0e2185d9d4450f94b253c4201d440e9d 218 Gene3D G3DSA:1.10.10.10 87 170 8.3E-7 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00547 0e2185d9d4450f94b253c4201d440e9d 218 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 20 161 2.9E-16 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03964 04c8b51c9235a2ceac3cbe9d77d46a78 317 Gene3D G3DSA:1.10.3720.10 68 315 5.1E-55 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03964 04c8b51c9235a2ceac3cbe9d77d46a78 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 310 3.1E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03964 04c8b51c9235a2ceac3cbe9d77d46a78 317 SUPERFAMILY SSF161098 87 303 6.02E-48 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH04103 a9ee901ad54709a3833033cf6d57d532 274 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 1 266 32.714 T 12-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AMJ96_CH04103 a9ee901ad54709a3833033cf6d57d532 274 Pfam PF02634 FdhD/NarQ family 28 265 1.0E-75 T 12-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AMJ96_CH04103 a9ee901ad54709a3833033cf6d57d532 274 Gene3D G3DSA:3.40.140.10 115 269 1.5E-47 T 12-10-2018 AMJ96_CH04103 a9ee901ad54709a3833033cf6d57d532 274 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 26 266 6.4E-58 T 12-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AMJ96_CH04103 a9ee901ad54709a3833033cf6d57d532 274 SUPERFAMILY SSF53927 9 265 1.44E-77 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMJ96_CH04103 a9ee901ad54709a3833033cf6d57d532 274 Gene3D G3DSA:3.10.20.10 29 112 1.2E-9 T 12-10-2018 AMJ96_CH04103 a9ee901ad54709a3833033cf6d57d532 274 PIRSF PIRSF015626 3 268 1.5E-76 T 12-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AMJ96_CH00925 10994be0ed5b896edac2fc2f06917a3e 331 SUPERFAMILY SSF143865 5 264 1.31E-34 T 12-10-2018 AMJ96_CH00925 10994be0ed5b896edac2fc2f06917a3e 331 Gene3D G3DSA:3.30.460.20 1 141 2.8E-27 T 12-10-2018 AMJ96_CH00925 10994be0ed5b896edac2fc2f06917a3e 331 Gene3D G3DSA:1.20.58.340 146 270 2.8E-6 T 12-10-2018 AMJ96_CH00925 10994be0ed5b896edac2fc2f06917a3e 331 Gene3D G3DSA:1.20.58.340 274 330 5.9E-9 T 12-10-2018 AMJ96_CH00925 10994be0ed5b896edac2fc2f06917a3e 331 SUPERFAMILY SSF144083 266 328 4.84E-15 T 12-10-2018 AMJ96_CH00925 10994be0ed5b896edac2fc2f06917a3e 331 Pfam PF01544 CorA-like Mg2+ transporter protein 41 327 3.4E-57 T 12-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 AMJ96_CH01475 5f20bac64b0f2131a09e8ed647cebbf6 463 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 7 450 8.7E-133 T 12-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 AMJ96_CH01475 5f20bac64b0f2131a09e8ed647cebbf6 463 SUPERFAMILY SSF47323 347 453 1.7E-22 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH01475 5f20bac64b0f2131a09e8ed647cebbf6 463 Gene3D G3DSA:3.40.50.620 1 323 3.3E-125 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH01475 5f20bac64b0f2131a09e8ed647cebbf6 463 SUPERFAMILY SSF52374 6 333 8.16E-86 T 12-10-2018 AMJ96_CH01475 5f20bac64b0f2131a09e8ed647cebbf6 463 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 30 41 4.7E-31 T 12-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMJ96_CH01475 5f20bac64b0f2131a09e8ed647cebbf6 463 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 234 255 4.7E-31 T 12-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMJ96_CH01475 5f20bac64b0f2131a09e8ed647cebbf6 463 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 68 77 4.7E-31 T 12-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMJ96_CH01475 5f20bac64b0f2131a09e8ed647cebbf6 463 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 203 221 4.7E-31 T 12-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AMJ96_CH01475 5f20bac64b0f2131a09e8ed647cebbf6 463 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 7 456 36.023 T 12-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 AMJ96_CH01475 5f20bac64b0f2131a09e8ed647cebbf6 463 Gene3D G3DSA:1.20.120.640 324 456 2.4E-18 T 12-10-2018 AMJ96_CH01475 5f20bac64b0f2131a09e8ed647cebbf6 463 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 21 333 1.0E-110 T 12-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 AMJ96_CH03779 d26e59252074cbca262172113b23282e 202 SMART SM00028 82 115 63.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH03779 d26e59252074cbca262172113b23282e 202 SMART SM00028 150 183 150.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH03779 d26e59252074cbca262172113b23282e 202 SMART SM00028 116 149 0.016 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH03779 d26e59252074cbca262172113b23282e 202 Gene3D G3DSA:1.25.40.10 23 199 8.2E-18 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03779 d26e59252074cbca262172113b23282e 202 SUPERFAMILY SSF48452 80 196 2.22E-18 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02076 3994b6419a3a65030e4bc26ea0019025 152 Gene3D G3DSA:2.60.120.10 1 149 7.4E-39 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH02076 3994b6419a3a65030e4bc26ea0019025 152 Pfam PF07883 Cupin domain 40 107 2.2E-20 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_CH02076 3994b6419a3a65030e4bc26ea0019025 152 SUPERFAMILY SSF51182 20 145 2.57E-30 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH00616 41f9800ae60a379f2c79e5533822ae9e 143 Pfam PF11164 Protein of unknown function (DUF2948) 4 142 2.0E-53 T 12-10-2018 IPR021335 Protein of unknown function DUF2948 AMJ96_CH00429 072df51f248690be0f123436512b14e0 407 Pfam PF02646 RmuC family 97 374 1.3E-57 T 12-10-2018 IPR003798 DNA recombination RmuC AMJ96_CH04159 cba0be885c6f4c88d2c8e4a3f91cbdad 250 Gene3D G3DSA:3.40.50.880 10 238 1.3E-50 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH04159 cba0be885c6f4c88d2c8e4a3f91cbdad 250 SUPERFAMILY SSF52317 14 196 6.71E-38 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH04159 cba0be885c6f4c88d2c8e4a3f91cbdad 250 Pfam PF00117 Glutamine amidotransferase class-I 54 186 4.1E-14 T 12-10-2018 IPR017926 Glutamine amidotransferase AMJ96_CH01864 ae65d0c93a911ee88b55fd2f37ee6dac 264 Pfam PF08238 Sel1 repeat 77 107 0.018 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH01864 ae65d0c93a911ee88b55fd2f37ee6dac 264 Pfam PF08238 Sel1 repeat 121 149 110.0 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH01864 ae65d0c93a911ee88b55fd2f37ee6dac 264 Pfam PF08238 Sel1 repeat 159 194 4.2E-5 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH01864 ae65d0c93a911ee88b55fd2f37ee6dac 264 SMART SM00671 73 108 2.4E-5 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH01864 ae65d0c93a911ee88b55fd2f37ee6dac 264 SMART SM00671 159 194 6.5E-7 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH01864 ae65d0c93a911ee88b55fd2f37ee6dac 264 SMART SM00671 119 157 18.0 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH01864 ae65d0c93a911ee88b55fd2f37ee6dac 264 Gene3D G3DSA:1.25.40.10 38 262 9.9E-32 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01864 ae65d0c93a911ee88b55fd2f37ee6dac 264 SUPERFAMILY SSF81901 42 234 1.48E-27 T 12-10-2018 AMJ96_CH02672 5abb94e6140f31521dfb8660f2df5a36 207 SMART SM00448 10 121 3.0E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02672 5abb94e6140f31521dfb8660f2df5a36 207 Gene3D G3DSA:1.10.10.10 139 203 2.4E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02672 5abb94e6140f31521dfb8660f2df5a36 207 Pfam PF00072 Response regulator receiver domain 12 122 8.6E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02672 5abb94e6140f31521dfb8660f2df5a36 207 ProSitePatterns PS00622 LuxR-type HTH domain signature. 162 189 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH02672 5abb94e6140f31521dfb8660f2df5a36 207 SUPERFAMILY SSF52172 9 171 1.85E-30 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH02672 5abb94e6140f31521dfb8660f2df5a36 207 Gene3D G3DSA:3.40.50.2300 6 137 6.8E-40 T 12-10-2018 AMJ96_CH02672 5abb94e6140f31521dfb8660f2df5a36 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 2.7E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH02672 5abb94e6140f31521dfb8660f2df5a36 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 2.7E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH02672 5abb94e6140f31521dfb8660f2df5a36 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 2.7E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH02672 5abb94e6140f31521dfb8660f2df5a36 207 SMART SM00421 145 202 2.1E-17 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH02672 5abb94e6140f31521dfb8660f2df5a36 207 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 202 1.2E-18 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00566 d6105bcfc6a3f2dce9926e9230163615 241 Pfam PF00149 Calcineurin-like phosphoesterase 44 160 4.8E-7 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMJ96_CH00566 d6105bcfc6a3f2dce9926e9230163615 241 TIGRFAM TIGR04123 P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated 22 219 9.2E-65 T 12-10-2018 IPR026336 Metallophosphoesterase, DNA ligase-associated AMJ96_CH00566 d6105bcfc6a3f2dce9926e9230163615 241 Gene3D G3DSA:3.60.21.10 43 163 1.1E-8 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like AMJ96_CH00566 d6105bcfc6a3f2dce9926e9230163615 241 SUPERFAMILY SSF56300 43 137 4.4E-14 T 12-10-2018 AMJ96_CH00566 d6105bcfc6a3f2dce9926e9230163615 241 PIRSF PIRSF000887 21 240 3.5E-58 T 12-10-2018 IPR024173 Phosphoesterase, MJ0037 AMJ96_CH03554 6b2475b20a207adad53027bdc63a8416 273 Gene3D G3DSA:3.40.1280.10 114 272 2.5E-37 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMJ96_CH03554 6b2475b20a207adad53027bdc63a8416 273 SUPERFAMILY SSF75217 118 267 8.5E-31 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases AMJ96_CH03554 6b2475b20a207adad53027bdc63a8416 273 SUPERFAMILY SSF55315 6 108 1.62E-13 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like AMJ96_CH03554 6b2475b20a207adad53027bdc63a8416 273 Pfam PF00588 SpoU rRNA Methylase family 125 264 5.1E-26 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMJ96_CH00421 a950633cdb26548fee58cedcce1e3608 210 Gene3D G3DSA:2.60.450.10 41 198 6.9E-19 T 12-10-2018 AMJ96_CH00421 a950633cdb26548fee58cedcce1e3608 210 Pfam PF03968 OstA-like protein 49 183 4.4E-21 T 12-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal AMJ96_CH00664 637be5c58eac75c1c357e50203f616ac 141 Pfam PF00072 Response regulator receiver domain 9 125 2.4E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00664 637be5c58eac75c1c357e50203f616ac 141 SUPERFAMILY SSF52172 7 131 8.68E-32 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH00664 637be5c58eac75c1c357e50203f616ac 141 SMART SM00448 7 124 1.5E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00664 637be5c58eac75c1c357e50203f616ac 141 Gene3D G3DSA:3.40.50.2300 1 139 2.4E-35 T 12-10-2018 AMJ96_PD00325 5bdaafd691fddd18088a28c40990bb29 328 SUPERFAMILY SSF161098 96 314 6.02E-14 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00325 5bdaafd691fddd18088a28c40990bb29 328 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 121 326 6.1E-29 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00325 5bdaafd691fddd18088a28c40990bb29 328 Gene3D G3DSA:1.10.3720.10 85 327 2.7E-16 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00298 a8b8b113329bd10537601fd7abbe5fa0 420 Gene3D G3DSA:3.40.190.10 135 406 5.5E-92 T 12-10-2018 AMJ96_PD00298 a8b8b113329bd10537601fd7abbe5fa0 420 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 23 186 5.9E-4 T 12-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 AMJ96_PD00298 a8b8b113329bd10537601fd7abbe5fa0 420 Gene3D G3DSA:3.40.190.10 46 367 5.5E-92 T 12-10-2018 AMJ96_PD00298 a8b8b113329bd10537601fd7abbe5fa0 420 Pfam PF01547 Bacterial extracellular solute-binding protein 41 330 1.3E-35 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PD00298 a8b8b113329bd10537601fd7abbe5fa0 420 SUPERFAMILY SSF53850 25 394 6.69E-78 T 12-10-2018 AMJ96_CH00398 18bee456ebe4b2ff825d5b057653a75f 220 Gene3D G3DSA:3.30.420.40 1 133 3.0E-33 T 12-10-2018 AMJ96_CH00398 18bee456ebe4b2ff825d5b057653a75f 220 SUPERFAMILY SSF53067 3 107 1.86E-27 T 12-10-2018 AMJ96_CH00398 18bee456ebe4b2ff825d5b057653a75f 220 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 204 5.2E-49 T 12-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 AMJ96_CH00398 18bee456ebe4b2ff825d5b057653a75f 220 Pfam PF00814 Glycoprotease family 35 135 7.6E-27 T 12-10-2018 IPR000905 Gcp-like domain AMJ96_CH01935 6a4a9784b75b028adebffdb7655d3411 444 Pfam PF10908 Protein of unknown function (DUF2778) 323 427 4.0E-27 T 12-10-2018 IPR021225 Protein of unknown function DUF2778 AMJ96_CH01182 228b0d60940ef3f6854be355d34e4599 211 SUPERFAMILY SSF46785 8 187 1.29E-30 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01182 228b0d60940ef3f6854be355d34e4599 211 ProSitePatterns PS00261 Glycoprotein hormones beta chain signature 1. 168 174 - T 12-10-2018 IPR018245 Gonadotropin, beta subunit, conserved site GO:0005179|GO:0005576 AMJ96_CH01182 228b0d60940ef3f6854be355d34e4599 211 Gene3D G3DSA:1.10.10.10 3 121 1.6E-8 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02587 a4ea045a1f1ce635b5ca84f4ad5bb861 132 SUPERFAMILY SSF53062 7 130 3.27E-32 T 12-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 AMJ96_CH02587 a4ea045a1f1ce635b5ca84f4ad5bb861 132 Pfam PF03610 PTS system fructose IIA component 9 123 8.2E-29 T 12-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AMJ96_CH02587 a4ea045a1f1ce635b5ca84f4ad5bb861 132 Gene3D G3DSA:3.40.50.510 3 131 6.5E-38 T 12-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 AMJ96_CH02587 a4ea045a1f1ce635b5ca84f4ad5bb861 132 TIGRFAM TIGR02364 dha_pts: dihydroxyacetone kinase, phosphotransfer subunit 8 130 4.7E-38 T 12-10-2018 IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain AMJ96_CH01958 df8b7d555367ce16f8f4c4ff43764810 257 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH01958 df8b7d555367ce16f8f4c4ff43764810 257 SUPERFAMILY SSF52540 18 251 2.41E-82 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01958 df8b7d555367ce16f8f4c4ff43764810 257 Gene3D G3DSA:3.40.50.300 13 256 6.9E-79 T 12-10-2018 AMJ96_CH01958 df8b7d555367ce16f8f4c4ff43764810 257 SMART SM00382 42 229 7.6E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01958 df8b7d555367ce16f8f4c4ff43764810 257 PIRSF PIRSF039085 14 257 2.0E-109 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMJ96_CH01958 df8b7d555367ce16f8f4c4ff43764810 257 Pfam PF00005 ABC transporter 33 181 2.0E-38 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00337 bf589bbff0a278296dbf2f1b1c949156 315 TIGRFAM TIGR01380 glut_syn: glutathione synthase 6 313 8.3E-121 T 12-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AMJ96_CH00337 bf589bbff0a278296dbf2f1b1c949156 315 Gene3D G3DSA:3.30.470.20 117 296 5.5E-105 T 12-10-2018 AMJ96_CH00337 bf589bbff0a278296dbf2f1b1c949156 315 Hamap MF_00162 Glutathione synthetase [gshB]. 1 315 158.726 T 12-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AMJ96_CH00337 bf589bbff0a278296dbf2f1b1c949156 315 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 6 122 6.5E-40 T 12-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AMJ96_CH00337 bf589bbff0a278296dbf2f1b1c949156 315 Gene3D G3DSA:3.40.50.20 11 116 5.5E-105 T 12-10-2018 AMJ96_CH00337 bf589bbff0a278296dbf2f1b1c949156 315 Gene3D G3DSA:3.30.1490.20 139 203 5.5E-105 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 AMJ96_CH00337 bf589bbff0a278296dbf2f1b1c949156 315 SUPERFAMILY SSF52440 6 123 1.04E-39 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily AMJ96_CH00337 bf589bbff0a278296dbf2f1b1c949156 315 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 126 296 6.0E-73 T 12-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AMJ96_CH00337 bf589bbff0a278296dbf2f1b1c949156 315 SUPERFAMILY SSF56059 126 313 3.54E-58 T 12-10-2018 AMJ96_CH02396 6c82940bf578990949db4588b98ff30a 359 TIGRFAM TIGR01620 hyp_HI0043: TIGR01620 family protein 66 352 9.2E-108 T 12-10-2018 IPR006507 Uncharacterised protein family UPF0283 AMJ96_CH02396 6c82940bf578990949db4588b98ff30a 359 Pfam PF05128 Domain of unknown function (DUF697) 199 349 1.3E-47 T 12-10-2018 IPR021147 Protein of unknown function DUF697 AMJ96_CH02396 6c82940bf578990949db4588b98ff30a 359 Hamap MF_01085 UPF0283 membrane protein YcjF [ycjF]. 17 359 36.16 T 12-10-2018 IPR006507 Uncharacterised protein family UPF0283 AMJ96_CH02458 2faf3a64f38dac7bc5e433804136868e 488 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 252 437 4.3E-38 T 12-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AMJ96_CH02458 2faf3a64f38dac7bc5e433804136868e 488 SUPERFAMILY SSF53067 4 245 2.42E-72 T 12-10-2018 AMJ96_CH02458 2faf3a64f38dac7bc5e433804136868e 488 Gene3D G3DSA:3.30.420.40 1 243 2.2E-76 T 12-10-2018 AMJ96_CH02458 2faf3a64f38dac7bc5e433804136868e 488 PIRSF PIRSF000538 1 486 3.4E-123 T 12-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AMJ96_CH02458 2faf3a64f38dac7bc5e433804136868e 488 SUPERFAMILY SSF53067 244 463 1.22E-58 T 12-10-2018 AMJ96_CH02458 2faf3a64f38dac7bc5e433804136868e 488 Gene3D G3DSA:3.30.420.40 245 486 3.0E-58 T 12-10-2018 AMJ96_CH02458 2faf3a64f38dac7bc5e433804136868e 488 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 242 1.1E-62 T 12-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AMJ96_CH02721 b411030951141290235b59cb8fe16845 240 Gene3D G3DSA:3.90.1680.10 1 231 1.8E-62 T 12-10-2018 IPR036590 SOS response associated peptidase-like AMJ96_CH02721 b411030951141290235b59cb8fe16845 240 SUPERFAMILY SSF143081 2 231 5.1E-66 T 12-10-2018 IPR036590 SOS response associated peptidase-like AMJ96_CH02721 b411030951141290235b59cb8fe16845 240 Pfam PF02586 SOS response associated peptidase (SRAP) 1 219 7.4E-53 T 12-10-2018 IPR003738 SOS response associated peptidase (SRAP) AMJ96_CH01556 b7a302da951743416b40235258484ab3 171 Gene3D G3DSA:3.40.630.30 1 170 1.5E-50 T 12-10-2018 AMJ96_CH01556 b7a302da951743416b40235258484ab3 171 SUPERFAMILY SSF55729 3 156 3.12E-38 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH01556 b7a302da951743416b40235258484ab3 171 Pfam PF13302 Acetyltransferase (GNAT) domain 11 155 5.0E-29 T 12-10-2018 IPR000182 GNAT domain AMJ96_PD00200 1ca7c7265c1d85cea4af94c0a0a6bcf6 610 Pfam PF13667 ThiC-associated domain 16 88 7.8E-26 T 12-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMJ96_PD00200 1ca7c7265c1d85cea4af94c0a0a6bcf6 610 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 127 577 99.167 T 12-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMJ96_PD00200 1ca7c7265c1d85cea4af94c0a0a6bcf6 610 Pfam PF01964 Radical SAM ThiC family 128 572 7.9E-200 T 12-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMJ96_PD00200 1ca7c7265c1d85cea4af94c0a0a6bcf6 610 Gene3D G3DSA:3.20.20.540 195 508 1.6E-154 T 12-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMJ96_PD00200 1ca7c7265c1d85cea4af94c0a0a6bcf6 610 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 127 575 1.6E-213 T 12-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AMJ96_CH00970 5b2fe4da110cd10f5f3449fdc51550e6 471 Pfam PF01523 Putative modulator of DNA gyrase 31 321 6.2E-60 T 12-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 AMJ96_CH00970 5b2fe4da110cd10f5f3449fdc51550e6 471 PIRSF PIRSF004919 10 470 8.2E-134 T 12-10-2018 IPR025502 TldD AMJ96_CH00970 5b2fe4da110cd10f5f3449fdc51550e6 471 SUPERFAMILY SSF111283 25 469 2.88E-126 T 12-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 AMJ96_CH00970 5b2fe4da110cd10f5f3449fdc51550e6 471 Gene3D G3DSA:3.30.2290.10 8 229 7.2E-11 T 12-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal AMJ96_PD00533 7dd8513a23fe0358ef7f1a29080df8e7 274 SUPERFAMILY SSF56281 4 245 4.57E-26 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_PD00533 7dd8513a23fe0358ef7f1a29080df8e7 274 Pfam PF00753 Metallo-beta-lactamase superfamily 37 211 1.1E-5 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_PD00533 7dd8513a23fe0358ef7f1a29080df8e7 274 Gene3D G3DSA:3.60.15.10 17 236 1.0E-23 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_PD00533 7dd8513a23fe0358ef7f1a29080df8e7 274 SMART SM00849 33 211 4.6E-7 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_PA00295 741dbe70c570cc9d898733685f80207c 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_PA00295 741dbe70c570cc9d898733685f80207c 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 3.0E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00295 741dbe70c570cc9d898733685f80207c 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 3.0E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00295 741dbe70c570cc9d898733685f80207c 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 3.0E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00295 741dbe70c570cc9d898733685f80207c 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 3.0E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00295 741dbe70c570cc9d898733685f80207c 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 3.0E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00295 741dbe70c570cc9d898733685f80207c 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 3.0E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00295 741dbe70c570cc9d898733685f80207c 254 SUPERFAMILY SSF51735 9 253 2.44E-82 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PA00295 741dbe70c570cc9d898733685f80207c 254 Gene3D G3DSA:3.40.50.720 1 253 2.1E-85 T 12-10-2018 AMJ96_PA00295 741dbe70c570cc9d898733685f80207c 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 252 5.0E-67 T 12-10-2018 AMJ96_PA00295 741dbe70c570cc9d898733685f80207c 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 6.9E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00295 741dbe70c570cc9d898733685f80207c 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 6.9E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00295 741dbe70c570cc9d898733685f80207c 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 6.9E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01442 9a0db5cf6bf393588fa4c8ea684e5f59 634 Pfam PF12860 PAS fold 80 193 7.8E-17 T 12-10-2018 AMJ96_CH01442 9a0db5cf6bf393588fa4c8ea684e5f59 634 Gene3D G3DSA:3.20.20.450 374 618 4.0E-100 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH01442 9a0db5cf6bf393588fa4c8ea684e5f59 634 Gene3D G3DSA:3.30.450.20 64 194 3.1E-8 T 12-10-2018 AMJ96_CH01442 9a0db5cf6bf393588fa4c8ea684e5f59 634 Pfam PF00990 Diguanylate cyclase, GGDEF domain 200 356 1.3E-40 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01442 9a0db5cf6bf393588fa4c8ea684e5f59 634 Pfam PF00563 EAL domain 376 607 2.7E-73 T 12-10-2018 IPR001633 EAL domain AMJ96_CH01442 9a0db5cf6bf393588fa4c8ea684e5f59 634 SUPERFAMILY SSF55785 70 127 1.13E-5 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH01442 9a0db5cf6bf393588fa4c8ea684e5f59 634 Gene3D G3DSA:3.30.70.270 195 373 3.6E-51 T 12-10-2018 AMJ96_CH01442 9a0db5cf6bf393588fa4c8ea684e5f59 634 SUPERFAMILY SSF55073 205 361 4.71E-39 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH01442 9a0db5cf6bf393588fa4c8ea684e5f59 634 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 199 357 1.3E-31 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01442 9a0db5cf6bf393588fa4c8ea684e5f59 634 SMART SM00267 189 360 1.5E-47 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01442 9a0db5cf6bf393588fa4c8ea684e5f59 634 SMART SM00052 370 612 5.5E-118 T 12-10-2018 IPR001633 EAL domain AMJ96_CH01442 9a0db5cf6bf393588fa4c8ea684e5f59 634 SUPERFAMILY SSF141868 376 617 1.27E-90 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH03976 e99e9846cb2a99d31d4080510e02f3f4 140 ProSitePatterns PS00552 MerR-type HTH domain signature. 7 29 - T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03976 e99e9846cb2a99d31d4080510e02f3f4 140 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 16 29 2.4E-13 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03976 e99e9846cb2a99d31d4080510e02f3f4 140 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 40 60 2.4E-13 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03976 e99e9846cb2a99d31d4080510e02f3f4 140 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 5 16 2.4E-13 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03976 e99e9846cb2a99d31d4080510e02f3f4 140 Pfam PF09278 MerR, DNA binding 48 109 2.1E-20 T 12-10-2018 IPR015358 Transcription regulator MerR, DNA binding AMJ96_CH03976 e99e9846cb2a99d31d4080510e02f3f4 140 Pfam PF00376 MerR family regulatory protein 5 42 2.7E-14 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03976 e99e9846cb2a99d31d4080510e02f3f4 140 SUPERFAMILY SSF46955 5 127 3.33E-33 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily AMJ96_CH03976 e99e9846cb2a99d31d4080510e02f3f4 140 Gene3D G3DSA:1.10.1660.10 1 128 1.1E-34 T 12-10-2018 AMJ96_CH03976 e99e9846cb2a99d31d4080510e02f3f4 140 SMART SM00422 4 73 4.7E-25 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AMJ96_CH01402 e69cce75e9bb4a41f82fada20d50e8bc 484 Pfam PF02397 Bacterial sugar transferase 285 478 5.0E-54 T 12-10-2018 IPR003362 Bacterial sugar transferase AMJ96_CH02041 2ae54550f51480825984f003e67ada6c 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.2E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02041 2ae54550f51480825984f003e67ada6c 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.2E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02041 2ae54550f51480825984f003e67ada6c 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.2E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02041 2ae54550f51480825984f003e67ada6c 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.2E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02041 2ae54550f51480825984f003e67ada6c 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 2.2E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02041 2ae54550f51480825984f003e67ada6c 267 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 191 3.9E-4 T 12-10-2018 AMJ96_CH02041 2ae54550f51480825984f003e67ada6c 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.4E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02041 2ae54550f51480825984f003e67ada6c 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 2.4E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02041 2ae54550f51480825984f003e67ada6c 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 2.4E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02041 2ae54550f51480825984f003e67ada6c 267 SUPERFAMILY SSF51735 3 232 2.32E-62 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02041 2ae54550f51480825984f003e67ada6c 267 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH02041 2ae54550f51480825984f003e67ada6c 267 Pfam PF00106 short chain dehydrogenase 7 198 1.8E-54 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02041 2ae54550f51480825984f003e67ada6c 267 Gene3D G3DSA:3.40.50.720 3 252 4.4E-63 T 12-10-2018 AMJ96_CH00789 b7cf1a75a8061032036ab2a23b609176 113 Pfam PF05523 WxcM-like, C-terminal 2 107 5.5E-29 T 12-10-2018 IPR008894 WxcM-like, C-terminal KEGG: 00523+5.3.2.3|MetaCyc: PWY-6953|MetaCyc: PWY-7688 AMJ96_CH00789 b7cf1a75a8061032036ab2a23b609176 113 Gene3D G3DSA:2.60.120.10 1 112 4.3E-32 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH00789 b7cf1a75a8061032036ab2a23b609176 113 SUPERFAMILY SSF51182 2 108 9.55E-24 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH01196 c020fcd004a030e60693e2ce136a5e61 221 Pfam PF13417 Glutathione S-transferase, N-terminal domain 5 90 5.0E-8 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMJ96_CH01196 c020fcd004a030e60693e2ce136a5e61 221 SUPERFAMILY SSF52833 1 89 1.68E-15 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH01196 c020fcd004a030e60693e2ce136a5e61 221 SUPERFAMILY SSF47616 82 213 1.27E-24 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMJ96_CH01196 c020fcd004a030e60693e2ce136a5e61 221 Pfam PF00043 Glutathione S-transferase, C-terminal domain 141 205 8.2E-13 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMJ96_CH01196 c020fcd004a030e60693e2ce136a5e61 221 Gene3D G3DSA:1.20.1050.10 94 219 1.2E-37 T 12-10-2018 AMJ96_CH01196 c020fcd004a030e60693e2ce136a5e61 221 Gene3D G3DSA:3.40.30.10 1 92 4.9E-23 T 12-10-2018 AMJ96_PB00123 d3f43d50e651ff4267c0468cc873a41c 503 SUPERFAMILY SSF48056 34 299 4.58E-55 T 12-10-2018 IPR008922 Uncharacterised domain, di-copper centre Reactome: R-HSA-5662702 AMJ96_PB00123 d3f43d50e651ff4267c0468cc873a41c 503 Pfam PF12142 Polyphenol oxidase middle domain 258 300 2.0E-9 T 12-10-2018 IPR022739 Polyphenol oxidase, central domain GO:0004097|GO:0055114 KEGG: 00350+1.10.3.1|KEGG: 00950+1.10.3.1|MetaCyc: PWY-6752 AMJ96_PB00123 d3f43d50e651ff4267c0468cc873a41c 503 Pfam PF00264 Common central domain of tyrosinase 73 253 1.1E-34 T 12-10-2018 IPR002227 Tyrosinase copper-binding domain GO:0016491 Reactome: R-HSA-5662702 AMJ96_PB00123 d3f43d50e651ff4267c0468cc873a41c 503 ProSitePatterns PS00498 Tyrosinase and hemocyanins CuB-binding region signature. 235 246 - T 12-10-2018 IPR002227 Tyrosinase copper-binding domain GO:0016491 Reactome: R-HSA-5662702 AMJ96_PB00123 d3f43d50e651ff4267c0468cc873a41c 503 Gene3D G3DSA:1.10.1280.10 29 300 2.4E-60 T 12-10-2018 IPR008922 Uncharacterised domain, di-copper centre Reactome: R-HSA-5662702 AMJ96_PB00123 d3f43d50e651ff4267c0468cc873a41c 503 ProSitePatterns PS00497 Tyrosinase CuA-binding region signature. 91 108 - T 12-10-2018 IPR002227 Tyrosinase copper-binding domain GO:0016491 Reactome: R-HSA-5662702 AMJ96_PB00123 d3f43d50e651ff4267c0468cc873a41c 503 PRINTS PR00092 Tyrosinase copper-binding domain signature 91 108 7.0E-15 T 12-10-2018 IPR002227 Tyrosinase copper-binding domain GO:0016491 Reactome: R-HSA-5662702 AMJ96_PB00123 d3f43d50e651ff4267c0468cc873a41c 503 PRINTS PR00092 Tyrosinase copper-binding domain signature 122 127 7.0E-15 T 12-10-2018 IPR002227 Tyrosinase copper-binding domain GO:0016491 Reactome: R-HSA-5662702 AMJ96_PB00123 d3f43d50e651ff4267c0468cc873a41c 503 PRINTS PR00092 Tyrosinase copper-binding domain signature 234 252 7.0E-15 T 12-10-2018 IPR002227 Tyrosinase copper-binding domain GO:0016491 Reactome: R-HSA-5662702 AMJ96_PB00123 d3f43d50e651ff4267c0468cc873a41c 503 PRINTS PR00092 Tyrosinase copper-binding domain signature 215 226 7.0E-15 T 12-10-2018 IPR002227 Tyrosinase copper-binding domain GO:0016491 Reactome: R-HSA-5662702 AMJ96_CH00159 b833b74e6acb50f8158483646e25f3e7 782 Gene3D G3DSA:3.30.980.40 279 383 2.4E-29 T 12-10-2018 AMJ96_CH00159 b833b74e6acb50f8158483646e25f3e7 782 SUPERFAMILY SSF46785 715 778 7.53E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00159 b833b74e6acb50f8158483646e25f3e7 782 Pfam PF09397 Ftsk gamma domain 716 775 4.1E-25 T 12-10-2018 IPR018541 FtsK gamma domain AMJ96_CH00159 b833b74e6acb50f8158483646e25f3e7 782 Gene3D G3DSA:3.40.50.300 384 691 1.7E-115 T 12-10-2018 AMJ96_CH00159 b833b74e6acb50f8158483646e25f3e7 782 Pfam PF01580 FtsK/SpoIIIE family 388 606 1.5E-65 T 12-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AMJ96_CH00159 b833b74e6acb50f8158483646e25f3e7 782 Gene3D G3DSA:1.10.10.10 710 775 2.5E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00159 b833b74e6acb50f8158483646e25f3e7 782 SMART SM00382 422 627 0.0084 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00159 b833b74e6acb50f8158483646e25f3e7 782 SMART SM00843 714 779 1.3E-34 T 12-10-2018 IPR018541 FtsK gamma domain AMJ96_CH00159 b833b74e6acb50f8158483646e25f3e7 782 SUPERFAMILY SSF52540 366 677 2.45E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00362 af113981e5e344bebdf23e42174a3207 233 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 82 1.7E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00362 af113981e5e344bebdf23e42174a3207 233 SUPERFAMILY SSF46785 15 86 9.21E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00362 af113981e5e344bebdf23e42174a3207 233 SUPERFAMILY SSF48008 98 228 7.85E-28 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PC00362 af113981e5e344bebdf23e42174a3207 233 SMART SM00345 23 82 2.7E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00362 af113981e5e344bebdf23e42174a3207 233 Pfam PF07729 FCD domain 100 220 1.2E-23 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PC00362 af113981e5e344bebdf23e42174a3207 233 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 3.1E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00362 af113981e5e344bebdf23e42174a3207 233 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 3.1E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PC00362 af113981e5e344bebdf23e42174a3207 233 SMART SM00895 100 221 3.2E-20 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PC00362 af113981e5e344bebdf23e42174a3207 233 Gene3D G3DSA:1.20.120.530 96 229 1.8E-30 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PC00362 af113981e5e344bebdf23e42174a3207 233 Gene3D G3DSA:1.10.10.10 2 83 1.2E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03279 47d6284af90c90d74289d1ef71d5f514 271 Gene3D G3DSA:3.40.50.720 115 262 1.3E-26 T 12-10-2018 AMJ96_CH03279 47d6284af90c90d74289d1ef71d5f514 271 Pfam PF02625 XdhC and CoxI family 9 65 3.2E-12 T 12-10-2018 IPR003777 XdhC- CoxI AMJ96_CH03279 47d6284af90c90d74289d1ef71d5f514 271 Pfam PF13478 XdhC Rossmann domain 117 258 4.0E-28 T 12-10-2018 IPR027051 XdhC Rossmann domain AMJ96_CH03279 47d6284af90c90d74289d1ef71d5f514 271 TIGRFAM TIGR02964 xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC 15 259 3.6E-88 T 12-10-2018 IPR014308 Xanthine dehydrogenase accessory protein XdhC AMJ96_CH03279 47d6284af90c90d74289d1ef71d5f514 271 SUPERFAMILY SSF51735 116 198 7.22E-5 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02781 0549e2894741ef2b4b6899a1c0ab49c3 426 Gene3D G3DSA:3.90.190.10 1 142 4.2E-38 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMJ96_CH02781 0549e2894741ef2b4b6899a1c0ab49c3 426 TIGRFAM TIGR01244 TIGR01244: TIGR01244 family protein 6 133 1.3E-31 T 12-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 AMJ96_CH02781 0549e2894741ef2b4b6899a1c0ab49c3 426 SUPERFAMILY SSF56281 156 389 5.01E-44 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH02781 0549e2894741ef2b4b6899a1c0ab49c3 426 Pfam PF04273 Putative phosphatase (DUF442) 4 110 2.8E-45 T 12-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 AMJ96_CH02781 0549e2894741ef2b4b6899a1c0ab49c3 426 SUPERFAMILY SSF52799 6 98 1.67E-6 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like AMJ96_CH02781 0549e2894741ef2b4b6899a1c0ab49c3 426 Gene3D G3DSA:3.60.15.10 143 426 6.1E-102 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH02781 0549e2894741ef2b4b6899a1c0ab49c3 426 Pfam PF00753 Metallo-beta-lactamase superfamily 167 345 4.9E-22 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH02781 0549e2894741ef2b4b6899a1c0ab49c3 426 SMART SM00849 156 345 2.6E-22 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_PB00026 f7b09078aadd8a33a216d1d2aa85bec6 275 Pfam PF13338 Transcriptional regulator, AbiEi antitoxin 16 63 9.3E-8 T 12-10-2018 IPR025159 Transcriptional regulator, AbiEi antitoxin AMJ96_PB00026 f7b09078aadd8a33a216d1d2aa85bec6 275 Pfam PF09407 AbiEi antitoxin C-terminal domain 75 216 1.0E-33 T 12-10-2018 IPR018547 AbiEi antitoxin C-terminal domain AMJ96_CH02938 6e50ec838e59f7b87d04d652b85fd90a 251 Gene3D G3DSA:3.40.50.720 2 249 4.7E-37 T 12-10-2018 AMJ96_CH02938 6e50ec838e59f7b87d04d652b85fd90a 251 SUPERFAMILY SSF51735 1 213 3.38E-35 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02938 6e50ec838e59f7b87d04d652b85fd90a 251 Pfam PF13460 NAD(P)H-binding 7 173 4.3E-14 T 12-10-2018 IPR016040 NAD(P)-binding domain AMJ96_CH01947 d24cc23dd294bf3ae8ecf1fd84d8fe72 192 SUPERFAMILY SSF50249 25 90 2.79E-17 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH01947 d24cc23dd294bf3ae8ecf1fd84d8fe72 192 Gene3D G3DSA:2.40.50.140 119 181 2.1E-16 T 12-10-2018 AMJ96_CH01947 d24cc23dd294bf3ae8ecf1fd84d8fe72 192 SUPERFAMILY SSF50249 118 181 4.07E-17 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH01947 d24cc23dd294bf3ae8ecf1fd84d8fe72 192 PRINTS PR00050 Cold shock protein signature 141 150 4.0E-8 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_CH01947 d24cc23dd294bf3ae8ecf1fd84d8fe72 192 PRINTS PR00050 Cold shock protein signature 156 174 4.0E-8 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_CH01947 d24cc23dd294bf3ae8ecf1fd84d8fe72 192 PRINTS PR00050 Cold shock protein signature 120 135 4.0E-8 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_CH01947 d24cc23dd294bf3ae8ecf1fd84d8fe72 192 Pfam PF00313 'Cold-shock' DNA-binding domain 119 180 2.3E-15 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_CH01947 d24cc23dd294bf3ae8ecf1fd84d8fe72 192 Pfam PF00313 'Cold-shock' DNA-binding domain 27 88 9.0E-15 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_CH01947 d24cc23dd294bf3ae8ecf1fd84d8fe72 192 Gene3D G3DSA:2.40.50.140 19 99 4.2E-17 T 12-10-2018 AMJ96_CH01947 d24cc23dd294bf3ae8ecf1fd84d8fe72 192 SMART SM00357 119 183 5.5E-12 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 AMJ96_CH01947 d24cc23dd294bf3ae8ecf1fd84d8fe72 192 SMART SM00357 27 91 2.2E-9 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 AMJ96_CH01040 4efe8350e555b6b102c36d4dfca7a1fe 379 Gene3D G3DSA:3.40.1350.10 21 112 2.8E-7 T 12-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 AMJ96_CH01040 4efe8350e555b6b102c36d4dfca7a1fe 379 Pfam PF14088 Domain of unknown function (DUF4268) 228 363 1.4E-36 T 12-10-2018 IPR025364 Domain of unknown function DUF4268 AMJ96_CH00545 947f255ae626e4c93985d83a42645c3b 126 SUPERFAMILY SSF54593 1 126 1.48E-20 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH00545 947f255ae626e4c93985d83a42645c3b 126 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 121 1.1E-7 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH00545 947f255ae626e4c93985d83a42645c3b 126 Gene3D G3DSA:3.10.180.10 2 122 7.0E-20 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH00775 677b8969bf00039bf5a2e24915b3a92e 531 Gene3D G3DSA:3.10.105.10 288 505 3.5E-162 T 12-10-2018 AMJ96_CH00775 677b8969bf00039bf5a2e24915b3a92e 531 Gene3D G3DSA:3.40.190.10 207 518 3.5E-162 T 12-10-2018 AMJ96_CH00775 677b8969bf00039bf5a2e24915b3a92e 531 Gene3D G3DSA:3.90.76.10 39 206 3.5E-162 T 12-10-2018 AMJ96_CH00775 677b8969bf00039bf5a2e24915b3a92e 531 SUPERFAMILY SSF53850 24 527 1.48E-144 T 12-10-2018 AMJ96_CH00775 677b8969bf00039bf5a2e24915b3a92e 531 PIRSF PIRSF002741 9 531 7.6E-110 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_CH00775 677b8969bf00039bf5a2e24915b3a92e 531 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 68 449 1.2E-93 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_CH03579 3d18550233fc386510a6db060edc1c17 154 Gene3D G3DSA:1.10.10.10 1 145 1.0E-40 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03579 3d18550233fc386510a6db060edc1c17 154 SUPERFAMILY SSF46785 1 136 1.56E-28 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03579 3d18550233fc386510a6db060edc1c17 154 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 135 7.1E-32 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type AMJ96_CH03579 3d18550233fc386510a6db060edc1c17 154 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 48 66 - T 12-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site AMJ96_CH03579 3d18550233fc386510a6db060edc1c17 154 Pfam PF02082 Transcriptional regulator 1 81 4.3E-22 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type AMJ96_CH04095 83a13818ee050cb3c63941998aef9cc4 622 Pfam PF07244 Surface antigen variable number repeat 223 295 1.1E-6 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AMJ96_CH04095 83a13818ee050cb3c63941998aef9cc4 622 Gene3D G3DSA:2.40.160.50 299 622 5.0E-70 T 12-10-2018 AMJ96_CH04095 83a13818ee050cb3c63941998aef9cc4 622 Gene3D G3DSA:3.10.20.310 206 298 1.6E-10 T 12-10-2018 AMJ96_CH04095 83a13818ee050cb3c63941998aef9cc4 622 Pfam PF01103 Surface antigen 322 622 1.2E-58 T 12-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 AMJ96_CH03543 18a5ffc82cb902d918578ec7022c401a 241 Pfam PF02397 Bacterial sugar transferase 47 232 2.1E-61 T 12-10-2018 IPR003362 Bacterial sugar transferase AMJ96_CH03847 08a625a7c44e9844467f302ab77fdd8a 132 SUPERFAMILY SSF54593 2 129 1.79E-24 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH03847 08a625a7c44e9844467f302ab77fdd8a 132 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 125 3.5E-11 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH03847 08a625a7c44e9844467f302ab77fdd8a 132 Gene3D G3DSA:3.10.180.10 1 130 5.4E-39 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH00580 b0def847906f71a53a639126244d3d35 134 SUPERFAMILY SSF51316 1 121 1.36E-23 T 12-10-2018 IPR011057 Mss4-like superfamily AMJ96_CH00580 b0def847906f71a53a639126244d3d35 134 Gene3D G3DSA:2.170.150.70 5 124 3.8E-30 T 12-10-2018 AMJ96_CH00580 b0def847906f71a53a639126244d3d35 134 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 28 104 1.7E-7 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMJ96_PA00257 98f8f0636175a9c50efd1bb300beb655 331 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 1 320 2.4E-86 T 12-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AMJ96_PA00257 98f8f0636175a9c50efd1bb300beb655 331 Gene3D G3DSA:2.40.100.10 187 323 9.6E-40 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily AMJ96_PA00257 98f8f0636175a9c50efd1bb300beb655 331 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 24 295 6.0E-79 T 12-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AMJ96_PA00257 98f8f0636175a9c50efd1bb300beb655 331 SUPERFAMILY SSF50891 201 301 4.17E-5 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily AMJ96_PA00257 98f8f0636175a9c50efd1bb300beb655 331 SMART SM00797 23 312 1.2E-121 T 12-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AMJ96_CH03028 73f8a442749aaf3eaba270041cb456ee 175 SUPERFAMILY SSF53955 43 173 4.79E-36 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily AMJ96_CH03028 73f8a442749aaf3eaba270041cb456ee 175 Pfam PF01464 Transglycosylase SLT domain 60 158 1.5E-23 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 AMJ96_CH03028 73f8a442749aaf3eaba270041cb456ee 175 Gene3D G3DSA:1.10.530.10 49 173 6.0E-31 T 12-10-2018 AMJ96_CH03460 febcc43bc746c2953ac5d5da8e08f666 187 SUPERFAMILY SSF48498 95 185 4.27E-18 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH03460 febcc43bc746c2953ac5d5da8e08f666 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 1.4E-5 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH03460 febcc43bc746c2953ac5d5da8e08f666 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 1.4E-5 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH03460 febcc43bc746c2953ac5d5da8e08f666 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 1.3E-12 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH03460 febcc43bc746c2953ac5d5da8e08f666 187 SUPERFAMILY SSF46689 7 80 6.16E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03460 febcc43bc746c2953ac5d5da8e08f666 187 Gene3D G3DSA:1.10.357.10 13 187 3.8E-46 T 12-10-2018 AMJ96_CH02624 7be99f02f669bde302ae24c0d557d41f 98 SUPERFAMILY SSF47598 9 47 8.53E-6 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMJ96_CH02624 7be99f02f669bde302ae24c0d557d41f 98 Pfam PF01402 Ribbon-helix-helix protein, copG family 10 45 4.6E-5 T 12-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 AMJ96_CH00557 3d2b933d8b0b89f62dcce354e1dd64f1 172 Pfam PF00188 Cysteine-rich secretory protein family 49 155 3.1E-15 T 12-10-2018 IPR014044 CAP domain AMJ96_CH00557 3d2b933d8b0b89f62dcce354e1dd64f1 172 Gene3D G3DSA:3.40.33.10 26 162 1.4E-30 T 12-10-2018 IPR035940 CAP superfamily AMJ96_CH00557 3d2b933d8b0b89f62dcce354e1dd64f1 172 SUPERFAMILY SSF55797 42 160 8.55E-16 T 12-10-2018 IPR035940 CAP superfamily AMJ96_CH00933 64028fb2647ac2bc21e5397ca6b4550b 647 SUPERFAMILY SSF158472 211 258 3.92E-9 T 12-10-2018 AMJ96_CH00933 64028fb2647ac2bc21e5397ca6b4550b 647 Gene3D G3DSA:1.20.1480.50 169 281 6.6E-16 T 12-10-2018 AMJ96_CH00933 64028fb2647ac2bc21e5397ca6b4550b 647 Pfam PF00672 HAMP domain 211 255 5.6E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH00933 64028fb2647ac2bc21e5397ca6b4550b 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 520 549 7.0E-42 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH00933 64028fb2647ac2bc21e5397ca6b4550b 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 443 470 7.0E-42 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH00933 64028fb2647ac2bc21e5397ca6b4550b 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 472 501 7.0E-42 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH00933 64028fb2647ac2bc21e5397ca6b4550b 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 366 395 7.0E-42 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_CH00933 64028fb2647ac2bc21e5397ca6b4550b 647 SUPERFAMILY SSF58104 312 593 1.26E-67 T 12-10-2018 AMJ96_CH00933 64028fb2647ac2bc21e5397ca6b4550b 647 SMART SM00283 345 592 1.4E-101 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH00933 64028fb2647ac2bc21e5397ca6b4550b 647 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 407 558 8.0E-50 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH00933 64028fb2647ac2bc21e5397ca6b4550b 647 Gene3D G3DSA:1.10.287.950 293 594 3.1E-75 T 12-10-2018 AMJ96_CH00933 64028fb2647ac2bc21e5397ca6b4550b 647 Pfam PF05227 CHASE3 domain 42 176 3.7E-15 T 12-10-2018 IPR007891 CHASE3 AMJ96_CH00933 64028fb2647ac2bc21e5397ca6b4550b 647 SMART SM00304 211 264 3.7E-6 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH00933 64028fb2647ac2bc21e5397ca6b4550b 647 SMART SM00304 292 344 25.0 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH00773 18002070bd4b24470330aa899a4aeeb8 498 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 5 482 5.9E-198 T 12-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 AMJ96_CH00773 18002070bd4b24470330aa899a4aeeb8 498 Gene3D G3DSA:3.40.605.10 17 459 8.5E-150 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_CH00773 18002070bd4b24470330aa899a4aeeb8 498 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 274 285 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMJ96_CH00773 18002070bd4b24470330aa899a4aeeb8 498 SUPERFAMILY SSF53720 2 482 6.68E-148 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_CH00773 18002070bd4b24470330aa899a4aeeb8 498 Gene3D G3DSA:3.40.309.10 249 451 8.5E-150 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_CH00773 18002070bd4b24470330aa899a4aeeb8 498 Pfam PF00171 Aldehyde dehydrogenase family 17 478 1.3E-135 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_CH01164 6a4b574f9fb38d76bc60069829ed1f17 323 SUPERFAMILY SSF50129 7 146 1.26E-30 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_CH01164 6a4b574f9fb38d76bc60069829ed1f17 323 Gene3D G3DSA:3.90.180.10 17 317 2.9E-88 T 12-10-2018 AMJ96_CH01164 6a4b574f9fb38d76bc60069829ed1f17 323 SUPERFAMILY SSF51735 115 256 2.41E-39 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01164 6a4b574f9fb38d76bc60069829ed1f17 323 SMART SM00829 12 321 6.6E-22 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_CH01164 6a4b574f9fb38d76bc60069829ed1f17 323 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 88 4.4E-8 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_CH01164 6a4b574f9fb38d76bc60069829ed1f17 323 Pfam PF00107 Zinc-binding dehydrogenase 153 249 8.8E-21 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_CH01164 6a4b574f9fb38d76bc60069829ed1f17 323 Gene3D G3DSA:3.40.50.720 125 268 2.9E-88 T 12-10-2018 AMJ96_PD00150 dfd18e6fe5150211916587f28c007a4c 319 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 316 2.4E-29 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00150 dfd18e6fe5150211916587f28c007a4c 319 Gene3D G3DSA:1.10.3720.10 84 314 1.1E-20 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00150 dfd18e6fe5150211916587f28c007a4c 319 SUPERFAMILY SSF161098 90 295 6.93E-22 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00150 dfd18e6fe5150211916587f28c007a4c 319 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 18 67 9.3E-20 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMJ96_CH00212 43a818c3c8cfc785e1cac3c6aa74b501 252 TIGRFAM TIGR02522 pilus_cpaD: pilus (Caulobacter type) biogenesis lipoprotein CpaD 38 238 4.4E-59 T 12-10-2018 IPR013361 Pilus biogenesis CpaD AMJ96_CH00212 43a818c3c8cfc785e1cac3c6aa74b501 252 Pfam PF09476 Pilus biogenesis CpaD protein (pilus_cpaD) 39 236 1.4E-67 T 12-10-2018 IPR019027 Pilus biogenesis CpaD-related AMJ96_CH00876 60a306bc410276513981d7fefe50e55f 304 Pfam PF05035 2-keto-3-deoxy-galactonokinase 10 296 1.3E-96 T 12-10-2018 IPR007729 2-keto-3-deoxy-galactonokinase GO:0008671|GO:0034194 KEGG: 00052+2.7.1.58|MetaCyc: PWY-7130 AMJ96_CH00876 60a306bc410276513981d7fefe50e55f 304 Gene3D G3DSA:3.30.420.310 80 304 5.6E-76 T 12-10-2018 AMJ96_CH00876 60a306bc410276513981d7fefe50e55f 304 SUPERFAMILY SSF53067 3 78 4.92E-5 T 12-10-2018 AMJ96_CH00876 60a306bc410276513981d7fefe50e55f 304 Gene3D G3DSA:3.30.420.300 1 79 8.0E-30 T 12-10-2018 AMJ96_CH03244 0820d2e2668ee9558b552b08df238169 350 TIGRFAM TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein 4 287 3.0E-163 T 12-10-2018 IPR022473 ABC transporter, Choline, ATP-binding subunit GO:0015220|GO:0015871|GO:0055052 AMJ96_CH03244 0820d2e2668ee9558b552b08df238169 350 SMART SM00382 52 245 4.2E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03244 0820d2e2668ee9558b552b08df238169 350 ProSitePatterns PS00211 ABC transporters family signature. 168 182 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03244 0820d2e2668ee9558b552b08df238169 350 Pfam PF00005 ABC transporter 44 195 5.1E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03244 0820d2e2668ee9558b552b08df238169 350 SUPERFAMILY SSF52540 43 274 1.42E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03244 0820d2e2668ee9558b552b08df238169 350 Gene3D G3DSA:3.40.50.300 34 304 1.6E-68 T 12-10-2018 AMJ96_PB00358 1364a38457dd4eed4207a37e4f23e7b0 262 PIRSF PIRSF006648 3 261 5.4E-25 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMJ96_PB00358 1364a38457dd4eed4207a37e4f23e7b0 262 TIGRFAM TIGR01291 nodJ: ABC-2 type transporter, NodJ family 10 261 7.4E-121 T 12-10-2018 IPR005981 ABC-2 type transporter, NodJ GO:0005215|GO:0009877|GO:0015772|GO:0016020 AMJ96_PB00358 1364a38457dd4eed4207a37e4f23e7b0 262 Pfam PF01061 ABC-2 type transporter 16 226 2.7E-28 T 12-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 AMJ96_PB00358 1364a38457dd4eed4207a37e4f23e7b0 262 PRINTS PR00164 ABC-2 type transport system membrane protein signature 65 87 1.2E-64 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMJ96_PB00358 1364a38457dd4eed4207a37e4f23e7b0 262 PRINTS PR00164 ABC-2 type transport system membrane protein signature 35 56 1.2E-64 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMJ96_PB00358 1364a38457dd4eed4207a37e4f23e7b0 262 PRINTS PR00164 ABC-2 type transport system membrane protein signature 184 203 1.2E-64 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMJ96_PB00358 1364a38457dd4eed4207a37e4f23e7b0 262 PRINTS PR00164 ABC-2 type transport system membrane protein signature 204 223 1.2E-64 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMJ96_PB00358 1364a38457dd4eed4207a37e4f23e7b0 262 PRINTS PR00164 ABC-2 type transport system membrane protein signature 147 171 1.2E-64 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMJ96_PB00358 1364a38457dd4eed4207a37e4f23e7b0 262 PRINTS PR00164 ABC-2 type transport system membrane protein signature 110 135 1.2E-64 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 AMJ96_CH00573 551856d7772c6abc7aa93f2e6a2a4f27 1254 SMART SM00671 1021 1056 1.6E-10 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH00573 551856d7772c6abc7aa93f2e6a2a4f27 1254 SMART SM00671 1057 1092 2.3E-5 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH00573 551856d7772c6abc7aa93f2e6a2a4f27 1254 SMART SM00671 984 1020 3.7E-5 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH00573 551856d7772c6abc7aa93f2e6a2a4f27 1254 SMART SM00671 1093 1128 2.5E-6 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH00573 551856d7772c6abc7aa93f2e6a2a4f27 1254 SUPERFAMILY SSF47090 1188 1244 9.68E-13 T 12-10-2018 IPR036365 PGBD-like superfamily AMJ96_CH00573 551856d7772c6abc7aa93f2e6a2a4f27 1254 Gene3D G3DSA:1.10.101.10 1184 1253 4.1E-12 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 AMJ96_CH00573 551856d7772c6abc7aa93f2e6a2a4f27 1254 Pfam PF08238 Sel1 repeat 985 1019 0.0081 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH00573 551856d7772c6abc7aa93f2e6a2a4f27 1254 Pfam PF08238 Sel1 repeat 1021 1056 2.4E-9 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH00573 551856d7772c6abc7aa93f2e6a2a4f27 1254 Pfam PF08238 Sel1 repeat 1094 1128 4.8E-5 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH00573 551856d7772c6abc7aa93f2e6a2a4f27 1254 Pfam PF08238 Sel1 repeat 1057 1091 7.5E-4 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH00573 551856d7772c6abc7aa93f2e6a2a4f27 1254 Gene3D G3DSA:1.25.40.10 955 1170 5.6E-56 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH00573 551856d7772c6abc7aa93f2e6a2a4f27 1254 Pfam PF01471 Putative peptidoglycan binding domain 1190 1243 8.9E-10 T 12-10-2018 IPR002477 Peptidoglycan binding-like AMJ96_CH00573 551856d7772c6abc7aa93f2e6a2a4f27 1254 SUPERFAMILY SSF81901 977 1132 4.97E-36 T 12-10-2018 AMJ96_CH03241 e77021430ab1b3bfd60816390cbf24ce 194 SUPERFAMILY SSF57716 143 189 2.38E-15 T 12-10-2018 AMJ96_CH03241 e77021430ab1b3bfd60816390cbf24ce 194 PIRSF PIRSF035805 1 193 6.2E-53 T 12-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 AMJ96_CH03241 e77021430ab1b3bfd60816390cbf24ce 194 Pfam PF00265 Thymidine kinase 2 187 1.3E-47 T 12-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 AMJ96_CH03241 e77021430ab1b3bfd60816390cbf24ce 194 Hamap MF_00124 Thymidine kinase [tdk]. 1 190 33.691 T 12-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 AMJ96_CH03241 e77021430ab1b3bfd60816390cbf24ce 194 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 174 187 - T 12-10-2018 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 AMJ96_CH03241 e77021430ab1b3bfd60816390cbf24ce 194 SUPERFAMILY SSF52540 1 141 1.33E-35 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03241 e77021430ab1b3bfd60816390cbf24ce 194 Gene3D G3DSA:3.40.50.300 1 142 2.0E-22 T 12-10-2018 AMJ96_CH03241 e77021430ab1b3bfd60816390cbf24ce 194 Gene3D G3DSA:3.30.60.20 144 188 3.8E-7 T 12-10-2018 AMJ96_PD00268 85b54be111549de2bca2ffde6e55c075 219 Gene3D G3DSA:1.10.3720.10 4 215 1.4E-48 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00268 85b54be111549de2bca2ffde6e55c075 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 197 9.7E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00268 85b54be111549de2bca2ffde6e55c075 219 SUPERFAMILY SSF161098 13 198 3.14E-41 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00268 85b54be111549de2bca2ffde6e55c075 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 11 107 2.5E-26 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_CH03942 e78628cc6b5bd5912196da25f341699d 636 Gene3D G3DSA:3.30.379.10 137 269 1.4E-6 T 12-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 AMJ96_CH03942 e78628cc6b5bd5912196da25f341699d 636 SUPERFAMILY SSF55545 140 270 3.49E-7 T 12-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 AMJ96_CH03942 e78628cc6b5bd5912196da25f341699d 636 Gene3D G3DSA:3.20.20.80 270 633 2.8E-123 T 12-10-2018 AMJ96_CH03942 e78628cc6b5bd5912196da25f341699d 636 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 271 617 1.5E-107 T 12-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 AMJ96_CH03942 e78628cc6b5bd5912196da25f341699d 636 SUPERFAMILY SSF51445 271 627 3.3E-116 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH03942 e78628cc6b5bd5912196da25f341699d 636 PRINTS PR00738 Glycosyl hydrolase family 20 signature 265 282 6.3E-45 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AMJ96_CH03942 e78628cc6b5bd5912196da25f341699d 636 PRINTS PR00738 Glycosyl hydrolase family 20 signature 581 597 6.3E-45 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AMJ96_CH03942 e78628cc6b5bd5912196da25f341699d 636 PRINTS PR00738 Glycosyl hydrolase family 20 signature 294 315 6.3E-45 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AMJ96_CH03942 e78628cc6b5bd5912196da25f341699d 636 PRINTS PR00738 Glycosyl hydrolase family 20 signature 364 381 6.3E-45 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AMJ96_CH03942 e78628cc6b5bd5912196da25f341699d 636 PRINTS PR00738 Glycosyl hydrolase family 20 signature 226 246 6.3E-45 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AMJ96_CH03942 e78628cc6b5bd5912196da25f341699d 636 PRINTS PR00738 Glycosyl hydrolase family 20 signature 413 431 6.3E-45 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AMJ96_CH03942 e78628cc6b5bd5912196da25f341699d 636 PRINTS PR00738 Glycosyl hydrolase family 20 signature 435 448 6.3E-45 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AMJ96_CH03942 e78628cc6b5bd5912196da25f341699d 636 PRINTS PR00738 Glycosyl hydrolase family 20 signature 599 616 6.3E-45 T 12-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 AMJ96_CH03155 927fad5cbb2f7ffddfbdcf8a000f6d08 127 Pfam PF01850 PIN domain 4 116 1.6E-6 T 12-10-2018 IPR002716 PIN domain AMJ96_CH03155 927fad5cbb2f7ffddfbdcf8a000f6d08 127 SUPERFAMILY SSF88723 1 117 1.18E-12 T 12-10-2018 IPR029060 PIN-like domain superfamily AMJ96_PA00237 5c856104bb56101795282eee40f81cd4 337 PIRSF PIRSF039012 1 337 7.2E-75 T 12-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 AMJ96_PA00237 5c856104bb56101795282eee40f81cd4 337 SUPERFAMILY SSF53187 14 333 1.54E-54 T 12-10-2018 AMJ96_PA00237 5c856104bb56101795282eee40f81cd4 337 Gene3D G3DSA:3.40.630.10 1 337 7.9E-92 T 12-10-2018 AMJ96_PA00237 5c856104bb56101795282eee40f81cd4 337 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 47 332 1.1E-66 T 12-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 AMJ96_CH02114 9ecd1ffb419311f8184644a152b2d1b8 308 SMART SM01130 11 301 3.6E-74 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH02114 9ecd1ffb419311f8184644a152b2d1b8 308 Pfam PF00701 Dihydrodipicolinate synthetase family 13 299 1.3E-54 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH02114 9ecd1ffb419311f8184644a152b2d1b8 308 PIRSF PIRSF001365 8 308 8.0E-58 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH02114 9ecd1ffb419311f8184644a152b2d1b8 308 TIGRFAM TIGR03249 KdgD: 5-dehydro-4-deoxyglucarate dehydratase 4 299 3.4E-145 T 12-10-2018 IPR017655 5-dehydro-4-deoxyglucarate dehydratase GO:0016052|GO:0047448 KEGG: 00053+4.2.1.41|MetaCyc: PWY-6486|MetaCyc: PWY-6497|MetaCyc: PWY-6499|MetaCyc: PWY-6501 AMJ96_CH02114 9ecd1ffb419311f8184644a152b2d1b8 308 SUPERFAMILY SSF51569 13 301 6.91E-66 T 12-10-2018 AMJ96_CH02114 9ecd1ffb419311f8184644a152b2d1b8 308 Gene3D G3DSA:3.20.20.70 2 305 1.2E-105 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH02114 9ecd1ffb419311f8184644a152b2d1b8 308 Hamap MF_00694 Probable 5-dehydro-4-deoxyglucarate dehydratase. 11 301 44.757 T 12-10-2018 IPR017655 5-dehydro-4-deoxyglucarate dehydratase GO:0016052|GO:0047448 KEGG: 00053+4.2.1.41|MetaCyc: PWY-6486|MetaCyc: PWY-6497|MetaCyc: PWY-6499|MetaCyc: PWY-6501 AMJ96_CH00942 0d818fa972234f5afbcd67d9d1ebff2e 473 Gene3D G3DSA:3.40.630.150 168 452 6.5E-113 T 12-10-2018 AMJ96_CH00942 0d818fa972234f5afbcd67d9d1ebff2e 473 Pfam PF05292 Malonyl-CoA decarboxylase C-terminal domain 169 415 2.6E-106 T 12-10-2018 IPR007956 Malonyl-CoA decarboxylase, C-terminal GO:0006633|GO:0050080 KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 AMJ96_CH00942 0d818fa972234f5afbcd67d9d1ebff2e 473 Gene3D G3DSA:1.20.140.90 23 165 1.0E-48 T 12-10-2018 IPR038351 Malonyl-CoA decarboxylase, N-terminal domain superfamily KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 AMJ96_CH00942 0d818fa972234f5afbcd67d9d1ebff2e 473 Pfam PF17408 Malonyl-CoA decarboxylase N-terminal domain 83 166 1.1E-30 T 12-10-2018 IPR035372 Malonyl-CoA decarboxylase, N-terminal KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 AMJ96_CH03149 65f5711a904c885f4798063ad00d6811 167 Pfam PF04229 GrpB protein 4 162 1.5E-42 T 12-10-2018 IPR007344 GrpB/Dephospho-CoA kinase AMJ96_CH03149 65f5711a904c885f4798063ad00d6811 167 SUPERFAMILY SSF81301 7 165 2.81E-44 T 12-10-2018 AMJ96_CH03149 65f5711a904c885f4798063ad00d6811 167 Gene3D G3DSA:3.30.460.10 1 167 6.1E-46 T 12-10-2018 AMJ96_CH04197 d693ad0d53c0748ce012c564342d1534 202 Pfam PF08534 Redoxin 58 181 1.6E-12 T 12-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 AMJ96_CH04197 d693ad0d53c0748ce012c564342d1534 202 Gene3D G3DSA:3.40.30.10 32 201 3.6E-37 T 12-10-2018 AMJ96_CH04197 d693ad0d53c0748ce012c564342d1534 202 SUPERFAMILY SSF52833 53 191 1.29E-30 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH04197 d693ad0d53c0748ce012c564342d1534 202 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 22 195 4.8E-66 T 12-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 AMJ96_CH00579 fbe1b4fb884a7217fa31da8eb3d93ef8 166 Pfam PF12802 MarR family 51 108 2.9E-11 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00579 fbe1b4fb884a7217fa31da8eb3d93ef8 166 SUPERFAMILY SSF46785 29 158 6.36E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00579 fbe1b4fb884a7217fa31da8eb3d93ef8 166 Gene3D G3DSA:1.10.10.10 17 160 9.2E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00579 fbe1b4fb884a7217fa31da8eb3d93ef8 166 SMART SM00347 45 144 8.1E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00579 fbe1b4fb884a7217fa31da8eb3d93ef8 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 104 120 8.6E-9 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00579 fbe1b4fb884a7217fa31da8eb3d93ef8 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 100 8.6E-9 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00579 fbe1b4fb884a7217fa31da8eb3d93ef8 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 84 8.6E-9 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00579 fbe1b4fb884a7217fa31da8eb3d93ef8 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 134 154 8.6E-9 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH02449 902f3a24203e0e5430b6bca16b87b4be 155 Pfam PF01047 MarR family 41 97 3.9E-14 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH02449 902f3a24203e0e5430b6bca16b87b4be 155 SUPERFAMILY SSF46785 9 148 2.37E-29 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02449 902f3a24203e0e5430b6bca16b87b4be 155 SMART SM00347 33 130 9.5E-17 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH02449 902f3a24203e0e5430b6bca16b87b4be 155 Gene3D G3DSA:1.10.10.10 14 148 4.2E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02449 902f3a24203e0e5430b6bca16b87b4be 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 74 89 2.6E-9 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH02449 902f3a24203e0e5430b6bca16b87b4be 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 57 73 2.6E-9 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH02449 902f3a24203e0e5430b6bca16b87b4be 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 93 109 2.6E-9 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH02449 902f3a24203e0e5430b6bca16b87b4be 155 ProSitePatterns PS01117 MarR-type HTH domain signature. 72 106 - T 12-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AMJ96_CH04248 c6c749e6928cd5aff950dc9dff6f3794 117 Gene3D G3DSA:3.10.180.10 15 115 7.4E-30 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH04248 c6c749e6928cd5aff950dc9dff6f3794 117 SUPERFAMILY SSF54593 9 112 3.62E-25 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH04248 c6c749e6928cd5aff950dc9dff6f3794 117 Pfam PF12681 Glyoxalase-like domain 12 112 1.4E-9 T 12-10-2018 IPR025870 Glyoxalase-like domain AMJ96_PD00341 decad1a3631a027e3dbb89680beec329 242 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 9 232 3.0E-19 T 12-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase AMJ96_PD00341 decad1a3631a027e3dbb89680beec329 242 Gene3D G3DSA:3.60.10.10 3 242 6.2E-53 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMJ96_PD00341 decad1a3631a027e3dbb89680beec329 242 SUPERFAMILY SSF56219 3 241 8.24E-40 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMJ96_CH03012 7341bad5c24ae7844c4cca2985a3812f 309 SUPERFAMILY SSF51735 1 309 1.4E-72 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03012 7341bad5c24ae7844c4cca2985a3812f 309 Gene3D G3DSA:3.40.50.720 1 309 4.8E-66 T 12-10-2018 AMJ96_CH03012 7341bad5c24ae7844c4cca2985a3812f 309 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 226 7.1E-34 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_CH02603 a4ceae367da25667c8f955bc31f31548 140 SUPERFAMILY SSF52833 2 137 1.89E-38 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH02603 a4ceae367da25667c8f955bc31f31548 140 Pfam PF03960 ArsC family 6 113 8.4E-15 T 12-10-2018 IPR006660 Arsenate reductase-like AMJ96_CH02603 a4ceae367da25667c8f955bc31f31548 140 Gene3D G3DSA:3.40.30.10 1 140 7.7E-57 T 12-10-2018 AMJ96_CH02603 a4ceae367da25667c8f955bc31f31548 140 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 3 115 9.1E-45 T 12-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 AMJ96_CH02175 96b6f65c6fe0e32ba1352e3d8f3b7a8f 190 SUPERFAMILY SSF50891 31 187 4.68E-45 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily AMJ96_CH02175 96b6f65c6fe0e32ba1352e3d8f3b7a8f 190 PIRSF PIRSF001467 17 189 7.3E-27 T 12-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 AMJ96_CH02175 96b6f65c6fe0e32ba1352e3d8f3b7a8f 190 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 43 58 1.7E-11 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMJ96_CH02175 96b6f65c6fe0e32ba1352e3d8f3b7a8f 190 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 69 81 1.7E-11 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMJ96_CH02175 96b6f65c6fe0e32ba1352e3d8f3b7a8f 190 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 147 1.7E-11 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMJ96_CH02175 96b6f65c6fe0e32ba1352e3d8f3b7a8f 190 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 163 1.7E-11 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMJ96_CH02175 96b6f65c6fe0e32ba1352e3d8f3b7a8f 190 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 64 81 - T 12-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 AMJ96_CH02175 96b6f65c6fe0e32ba1352e3d8f3b7a8f 190 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 30 185 4.4E-44 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 AMJ96_CH02175 96b6f65c6fe0e32ba1352e3d8f3b7a8f 190 Gene3D G3DSA:2.40.100.10 17 184 2.0E-42 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily AMJ96_PD00057 091480c6ae24d2ba3d3b93480b5d4450 440 Gene3D G3DSA:1.10.630.10 44 422 1.3E-26 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PD00057 091480c6ae24d2ba3d3b93480b5d4450 440 Pfam PF00067 Cytochrome P450 299 403 1.8E-10 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_PD00057 091480c6ae24d2ba3d3b93480b5d4450 440 SUPERFAMILY SSF48264 59 438 9.69E-31 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH03156 225b2e0a8c6bf80cfca275e28d384196 400 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 236 249 - T 12-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AMJ96_CH03156 225b2e0a8c6bf80cfca275e28d384196 400 Pfam PF00155 Aminotransferase class I and II 32 392 4.7E-81 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_CH03156 225b2e0a8c6bf80cfca275e28d384196 400 Gene3D G3DSA:3.90.1150.10 26 392 1.1E-133 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH03156 225b2e0a8c6bf80cfca275e28d384196 400 Gene3D G3DSA:3.40.640.10 63 286 1.1E-133 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH03156 225b2e0a8c6bf80cfca275e28d384196 400 SUPERFAMILY SSF53383 1 396 6.8E-112 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH00456 ce3487579c3d6c60525aa3d7d74b1ff5 666 SMART SM00304 316 368 3.2 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH00456 ce3487579c3d6c60525aa3d7d74b1ff5 666 SMART SM00304 207 260 4.2E-6 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH00456 ce3487579c3d6c60525aa3d7d74b1ff5 666 Gene3D G3DSA:1.10.287.950 317 618 1.1E-75 T 12-10-2018 AMJ96_CH00456 ce3487579c3d6c60525aa3d7d74b1ff5 666 SUPERFAMILY SSF158472 209 254 4.84E-10 T 12-10-2018 AMJ96_CH00456 ce3487579c3d6c60525aa3d7d74b1ff5 666 SUPERFAMILY SSF58104 336 617 4.84E-66 T 12-10-2018 AMJ96_CH00456 ce3487579c3d6c60525aa3d7d74b1ff5 666 Pfam PF00672 HAMP domain 208 248 1.6E-8 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_CH00456 ce3487579c3d6c60525aa3d7d74b1ff5 666 Gene3D G3DSA:1.10.8.500 207 258 1.3E-15 T 12-10-2018 AMJ96_CH00456 ce3487579c3d6c60525aa3d7d74b1ff5 666 SMART SM00283 369 616 4.4E-98 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_CH00456 ce3487579c3d6c60525aa3d7d74b1ff5 666 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 429 584 6.8E-50 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_PC00435 c6ddd5c81b299dd9c83184fb635acb3d 287 SUPERFAMILY SSF53335 20 214 1.75E-35 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_PC00435 c6ddd5c81b299dd9c83184fb635acb3d 287 Gene3D G3DSA:3.40.50.150 1 287 9.2E-41 T 12-10-2018 AMJ96_PC00435 c6ddd5c81b299dd9c83184fb635acb3d 287 Pfam PF08241 Methyltransferase domain 51 148 4.1E-20 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMJ96_CH00937 906e9a9fead2e0e5952475d58141050c 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 253 5.3E-61 T 12-10-2018 AMJ96_CH00937 906e9a9fead2e0e5952475d58141050c 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 5.1E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00937 906e9a9fead2e0e5952475d58141050c 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 5.1E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00937 906e9a9fead2e0e5952475d58141050c 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 5.1E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00937 906e9a9fead2e0e5952475d58141050c 255 Gene3D G3DSA:3.40.50.720 1 254 5.0E-78 T 12-10-2018 AMJ96_CH00937 906e9a9fead2e0e5952475d58141050c 255 SUPERFAMILY SSF51735 6 254 1.85E-75 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00937 906e9a9fead2e0e5952475d58141050c 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 8.0E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00937 906e9a9fead2e0e5952475d58141050c 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 8.0E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00937 906e9a9fead2e0e5952475d58141050c 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 8.0E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00937 906e9a9fead2e0e5952475d58141050c 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 8.0E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00937 906e9a9fead2e0e5952475d58141050c 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 8.0E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00937 906e9a9fead2e0e5952475d58141050c 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 8.0E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00699 bbd11b5c6c1d1430204103226945b73d 138 Pfam PF00460 Flagella basal body rod protein 8 32 3.4E-6 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AMJ96_CH00699 bbd11b5c6c1d1430204103226945b73d 138 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 14 34 - T 12-10-2018 IPR019776 Flagellar basal body rod protein, conserved site AMJ96_CH00699 bbd11b5c6c1d1430204103226945b73d 138 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 7 136 2.2E-44 T 12-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 AMJ96_CH00699 bbd11b5c6c1d1430204103226945b73d 138 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 89 134 3.1E-8 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AMJ96_CH04292 cf4400df4fa4d2da4abfb4fb77b02d6d 353 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 25 345 3.5E-115 T 12-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 AMJ96_CH04292 cf4400df4fa4d2da4abfb4fb77b02d6d 353 SUPERFAMILY SSF55681 19 348 2.6E-70 T 12-10-2018 AMJ96_CH04292 cf4400df4fa4d2da4abfb4fb77b02d6d 353 Pfam PF00152 tRNA synthetases class II (D, K and N) 21 345 8.4E-34 T 12-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH04292 cf4400df4fa4d2da4abfb4fb77b02d6d 353 Gene3D G3DSA:3.30.930.10 8 350 3.7E-85 T 12-10-2018 AMJ96_PD00244 cc231e7e52328bc6bd268a65f8e2e717 192 Pfam PF12802 MarR family 26 80 5.8E-7 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_PD00244 cc231e7e52328bc6bd268a65f8e2e717 192 Gene3D G3DSA:1.10.10.10 5 85 1.9E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00244 cc231e7e52328bc6bd268a65f8e2e717 192 SUPERFAMILY SSF46785 6 149 1.84E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00244 cc231e7e52328bc6bd268a65f8e2e717 192 PIRSF PIRSF006707 1 176 1.8E-52 T 12-10-2018 IPR026282 DNA-binding protein, MJ1563 type AMJ96_CH01981 2d58b4dc912e08fc719fbba1a94ab6bf 255 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 8 19 - T 12-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01981 2d58b4dc912e08fc719fbba1a94ab6bf 255 PRINTS PR00395 Ribosomal protein S2 signature 39 48 2.6E-38 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01981 2d58b4dc912e08fc719fbba1a94ab6bf 255 PRINTS PR00395 Ribosomal protein S2 signature 89 106 2.6E-38 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01981 2d58b4dc912e08fc719fbba1a94ab6bf 255 PRINTS PR00395 Ribosomal protein S2 signature 159 176 2.6E-38 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01981 2d58b4dc912e08fc719fbba1a94ab6bf 255 PRINTS PR00395 Ribosomal protein S2 signature 176 187 2.6E-38 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01981 2d58b4dc912e08fc719fbba1a94ab6bf 255 PRINTS PR00395 Ribosomal protein S2 signature 197 211 2.6E-38 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01981 2d58b4dc912e08fc719fbba1a94ab6bf 255 PRINTS PR00395 Ribosomal protein S2 signature 8 26 2.6E-38 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01981 2d58b4dc912e08fc719fbba1a94ab6bf 255 Gene3D G3DSA:3.40.50.10490 10 220 1.7E-91 T 12-10-2018 AMJ96_CH01981 2d58b4dc912e08fc719fbba1a94ab6bf 255 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 4 235 41.918 T 12-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01981 2d58b4dc912e08fc719fbba1a94ab6bf 255 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 159 183 - T 12-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01981 2d58b4dc912e08fc719fbba1a94ab6bf 255 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 7 225 2.4E-101 T 12-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01981 2d58b4dc912e08fc719fbba1a94ab6bf 255 Pfam PF00318 Ribosomal protein S2 11 225 1.6E-96 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01981 2d58b4dc912e08fc719fbba1a94ab6bf 255 Gene3D G3DSA:1.10.287.610 105 151 1.7E-91 T 12-10-2018 AMJ96_CH01981 2d58b4dc912e08fc719fbba1a94ab6bf 255 SUPERFAMILY SSF52313 8 230 5.62E-92 T 12-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily AMJ96_CH02724 6aba39e18a2da21d8f326ea8ad8dc723 155 Gene3D G3DSA:3.10.450.50 27 140 1.1E-6 T 12-10-2018 AMJ96_CH02724 6aba39e18a2da21d8f326ea8ad8dc723 155 Pfam PF12883 Protein of unknown function (DUF3828) 51 140 3.9E-9 T 12-10-2018 IPR024289 Domain of unknown function DUF3828 AMJ96_CH03756 34b2e0300072ae9f44f69f5c8913c3db 423 SUPERFAMILY SSF88946 6 73 3.02E-8 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03483 21a34ca81830262c43916e515d323437 774 Gene3D G3DSA:3.30.420.10 276 498 3.8E-19 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_CH03483 21a34ca81830262c43916e515d323437 774 Pfam PF00665 Integrase core domain 292 420 2.5E-7 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMJ96_CH03483 21a34ca81830262c43916e515d323437 774 SUPERFAMILY SSF53098 280 429 2.09E-11 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_CH01628 302a0d53e24e5dfcce689968213d6e1b 201 Gene3D G3DSA:3.40.50.150 2 196 2.8E-10 T 12-10-2018 AMJ96_CH01628 302a0d53e24e5dfcce689968213d6e1b 201 Pfam PF13578 Methyltransferase domain 47 155 4.0E-11 T 12-10-2018 AMJ96_CH01628 302a0d53e24e5dfcce689968213d6e1b 201 SUPERFAMILY SSF53335 32 188 1.37E-9 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_PA00108 c4b77583479467dcd2962174f61b9d21 294 Gene3D G3DSA:1.10.3720.10 52 293 1.2E-56 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00108 c4b77583479467dcd2962174f61b9d21 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 293 4.7E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PA00108 c4b77583479467dcd2962174f61b9d21 294 SUPERFAMILY SSF161098 56 282 2.49E-51 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00559 9139d19d621b12fa300c898e6b3fe6b5 310 SUPERFAMILY SSF53335 108 308 1.13E-21 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH00559 9139d19d621b12fa300c898e6b3fe6b5 310 Pfam PF13489 Methyltransferase domain 128 283 1.7E-9 T 12-10-2018 AMJ96_CH00559 9139d19d621b12fa300c898e6b3fe6b5 310 Gene3D G3DSA:1.25.40.10 2 91 1.8E-10 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH00559 9139d19d621b12fa300c898e6b3fe6b5 310 SMART SM00028 47 80 3.7E-4 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH00559 9139d19d621b12fa300c898e6b3fe6b5 310 SUPERFAMILY SSF48452 19 80 1.04E-10 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH00559 9139d19d621b12fa300c898e6b3fe6b5 310 Gene3D G3DSA:3.40.50.150 101 295 6.3E-19 T 12-10-2018 AMJ96_PB00108 ce4afb77d6b6b803155115577469a911 643 PIRSF PIRSF005419 1 422 7.1E-143 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMJ96_PB00108 ce4afb77d6b6b803155115577469a911 643 PIRSF PIRSF005419 412 635 1.9E-23 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMJ96_PB00108 ce4afb77d6b6b803155115577469a911 643 Pfam PF00771 FHIPEP family 26 365 5.8E-140 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMJ96_PB00108 ce4afb77d6b6b803155115577469a911 643 Pfam PF00771 FHIPEP family 424 621 4.8E-19 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMJ96_PB00108 ce4afb77d6b6b803155115577469a911 643 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 132 148 3.7E-53 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMJ96_PB00108 ce4afb77d6b6b803155115577469a911 643 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 151 169 3.7E-53 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMJ96_PB00108 ce4afb77d6b6b803155115577469a911 643 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 33 46 3.7E-53 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMJ96_PB00108 ce4afb77d6b6b803155115577469a911 643 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 181 198 3.7E-53 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMJ96_PB00108 ce4afb77d6b6b803155115577469a911 643 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 232 246 3.7E-53 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMJ96_PB00108 ce4afb77d6b6b803155115577469a911 643 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 70 89 3.7E-53 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AMJ96_CH02759 1ed368f2dfdf939fff0f643a1ecb35f4 467 Gene3D G3DSA:3.40.640.10 97 341 1.4E-94 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH02759 1ed368f2dfdf939fff0f643a1ecb35f4 467 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 39 391 1.8E-38 T 12-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 AMJ96_CH02759 1ed368f2dfdf939fff0f643a1ecb35f4 467 SUPERFAMILY SSF53383 7 462 9.91E-99 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH02759 1ed368f2dfdf939fff0f643a1ecb35f4 467 Gene3D G3DSA:3.90.1150.170 37 447 1.4E-94 T 12-10-2018 AMJ96_CH03843 8f1069ea2617ddd4fbaa01399eb3de53 480 Pfam PF00534 Glycosyl transferases group 1 283 439 1.0E-9 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 AMJ96_CH03843 8f1069ea2617ddd4fbaa01399eb3de53 480 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 1 475 4.2E-166 T 12-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 AMJ96_CH03843 8f1069ea2617ddd4fbaa01399eb3de53 480 Gene3D G3DSA:3.40.50.2000 249 459 1.0E-179 T 12-10-2018 AMJ96_CH03843 8f1069ea2617ddd4fbaa01399eb3de53 480 Pfam PF08323 Starch synthase catalytic domain 2 235 3.0E-70 T 12-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 AMJ96_CH03843 8f1069ea2617ddd4fbaa01399eb3de53 480 Hamap MF_00484 Glycogen synthase [glgA]. 1 475 46.902 T 12-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 AMJ96_CH03843 8f1069ea2617ddd4fbaa01399eb3de53 480 SUPERFAMILY SSF53756 1 476 1.53E-117 T 12-10-2018 AMJ96_CH03843 8f1069ea2617ddd4fbaa01399eb3de53 480 Gene3D G3DSA:3.40.50.2000 3 473 1.0E-179 T 12-10-2018 AMJ96_CH00695 8213e0fd49e8011bc1f22046ca2656dd 244 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 122 9.4E-38 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G AMJ96_CH00695 8213e0fd49e8011bc1f22046ca2656dd 244 SUPERFAMILY SSF117143 80 190 1.96E-13 T 12-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like AMJ96_CH00695 8213e0fd49e8011bc1f22046ca2656dd 244 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 220 3.4E-57 T 12-10-2018 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 AMJ96_CH00695 8213e0fd49e8011bc1f22046ca2656dd 244 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 177 238 5.5E-12 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AMJ96_CH00695 8213e0fd49e8011bc1f22046ca2656dd 244 Pfam PF00460 Flagella basal body rod protein 5 35 2.1E-8 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AMJ96_CH02869 9a593c263d13492d7b2d290249e64b0f 132 Pfam PF01475 Ferric uptake regulator family 6 123 2.2E-9 T 12-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AMJ96_CH02869 9a593c263d13492d7b2d290249e64b0f 132 Gene3D G3DSA:3.30.1490.190 75 132 9.2E-14 T 12-10-2018 AMJ96_CH02869 9a593c263d13492d7b2d290249e64b0f 132 Gene3D G3DSA:1.10.10.10 2 70 9.1E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02869 9a593c263d13492d7b2d290249e64b0f 132 SUPERFAMILY SSF46785 5 128 6.93E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03965 1f78d6b939910c0bc29214351174d46a 419 Gene3D G3DSA:3.40.190.10 144 397 3.5E-146 T 12-10-2018 AMJ96_CH03965 1f78d6b939910c0bc29214351174d46a 419 Gene3D G3DSA:3.40.190.10 29 375 3.5E-146 T 12-10-2018 AMJ96_CH03965 1f78d6b939910c0bc29214351174d46a 419 SUPERFAMILY SSF53850 27 417 7.24E-54 T 12-10-2018 AMJ96_CH03965 1f78d6b939910c0bc29214351174d46a 419 Pfam PF01547 Bacterial extracellular solute-binding protein 60 317 1.2E-22 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH01590 e74b3d99e93bece229040622212830ee 414 Pfam PF04932 O-Antigen ligase 198 337 2.9E-7 T 12-10-2018 IPR007016 O-antigen ligase-related AMJ96_PC00261 b0b7cfc1874947e69218ef85bbbc2436 354 SUPERFAMILY SSF50249 237 336 7.71E-17 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_PC00261 b0b7cfc1874947e69218ef85bbbc2436 354 Gene3D G3DSA:3.30.1490.70 55 228 3.5E-48 T 12-10-2018 AMJ96_PC00261 b0b7cfc1874947e69218ef85bbbc2436 354 Pfam PF01068 ATP dependent DNA ligase domain 56 230 3.2E-30 T 12-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 AMJ96_PC00261 b0b7cfc1874947e69218ef85bbbc2436 354 Gene3D G3DSA:2.40.50.140 233 344 1.5E-22 T 12-10-2018 AMJ96_PC00261 b0b7cfc1874947e69218ef85bbbc2436 354 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 45 343 4.5E-99 T 12-10-2018 IPR014146 DNA ligase D, ligase domain AMJ96_PC00261 b0b7cfc1874947e69218ef85bbbc2436 354 Pfam PF04679 ATP dependent DNA ligase C terminal region 249 336 7.2E-19 T 12-10-2018 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 AMJ96_PC00261 b0b7cfc1874947e69218ef85bbbc2436 354 SUPERFAMILY SSF56091 42 230 1.17E-48 T 12-10-2018 AMJ96_PC00261 b0b7cfc1874947e69218ef85bbbc2436 354 Gene3D G3DSA:3.30.470.30 68 187 3.5E-48 T 12-10-2018 AMJ96_CH03854 c6eb7099cba01dc2a9f0919de3280c28 536 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 285 469 5.0E-33 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH03854 c6eb7099cba01dc2a9f0919de3280c28 536 Pfam PF11845 Protein of unknown function (DUF3365) 20 202 2.8E-22 T 12-10-2018 IPR021796 Protein of unknown function DUF3365 AMJ96_CH03854 c6eb7099cba01dc2a9f0919de3280c28 536 Gene3D G3DSA:3.30.70.1230 282 474 2.7E-65 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03854 c6eb7099cba01dc2a9f0919de3280c28 536 SUPERFAMILY SSF55073 284 471 1.73E-55 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03854 c6eb7099cba01dc2a9f0919de3280c28 536 SMART SM00044 257 454 4.8E-18 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH00364 4a608105e8be335c158e71f90bde90f1 426 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 78 87 - T 12-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AMJ96_CH00364 4a608105e8be335c158e71f90bde90f1 426 Pfam PF07687 Peptidase dimerisation domain 209 314 2.1E-6 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain AMJ96_CH00364 4a608105e8be335c158e71f90bde90f1 426 Gene3D G3DSA:3.30.70.360 212 330 1.8E-123 T 12-10-2018 AMJ96_CH00364 4a608105e8be335c158e71f90bde90f1 426 SUPERFAMILY SSF53187 4 412 1.03E-84 T 12-10-2018 AMJ96_CH00364 4a608105e8be335c158e71f90bde90f1 426 Pfam PF01546 Peptidase family M20/M25/M40 79 409 9.1E-33 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 AMJ96_CH00364 4a608105e8be335c158e71f90bde90f1 426 Gene3D G3DSA:3.40.630.10 25 406 1.8E-123 T 12-10-2018 AMJ96_CH00364 4a608105e8be335c158e71f90bde90f1 426 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 11 409 2.4E-100 T 12-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 AMJ96_CH00364 4a608105e8be335c158e71f90bde90f1 426 SUPERFAMILY SSF55031 212 322 4.49E-22 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain AMJ96_CH00364 4a608105e8be335c158e71f90bde90f1 426 PIRSF PIRSF001235 6 416 3.7E-124 T 12-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 AMJ96_CH04282 fed27e3a38b4f0547398fc5d8683fa7f 606 ProSitePatterns PS00211 ABC transporters family signature. 405 419 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH04282 fed27e3a38b4f0547398fc5d8683fa7f 606 Gene3D G3DSA:1.10.287.380 522 603 2.4E-15 T 12-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 AMJ96_CH04282 fed27e3a38b4f0547398fc5d8683fa7f 606 ProSitePatterns PS00211 ABC transporters family signature. 120 134 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH04282 fed27e3a38b4f0547398fc5d8683fa7f 606 SMART SM00382 30 193 3.8E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04282 fed27e3a38b4f0547398fc5d8683fa7f 606 SMART SM00382 307 478 3.9E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04282 fed27e3a38b4f0547398fc5d8683fa7f 606 SUPERFAMILY SSF52540 3 193 9.94E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04282 fed27e3a38b4f0547398fc5d8683fa7f 606 Pfam PF00005 ABC transporter 301 433 1.2E-23 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH04282 fed27e3a38b4f0547398fc5d8683fa7f 606 SUPERFAMILY SSF52540 274 468 1.48E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04282 fed27e3a38b4f0547398fc5d8683fa7f 606 Pfam PF16326 ABC transporter C-terminal domain 530 598 5.6E-16 T 12-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 AMJ96_CH04282 fed27e3a38b4f0547398fc5d8683fa7f 606 Gene3D G3DSA:3.40.50.300 1 226 1.4E-49 T 12-10-2018 AMJ96_CH04282 fed27e3a38b4f0547398fc5d8683fa7f 606 Gene3D G3DSA:3.40.50.300 245 520 1.9E-60 T 12-10-2018 AMJ96_CH04282 fed27e3a38b4f0547398fc5d8683fa7f 606 Pfam PF00005 ABC transporter 24 148 9.2E-23 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00554 6ceafa7b1ac5816c7ad6f82c0a83768d 724 SUPERFAMILY SSF56935 41 724 3.21E-129 T 12-10-2018 AMJ96_PD00554 6ceafa7b1ac5816c7ad6f82c0a83768d 724 Pfam PF07715 TonB-dependent Receptor Plug Domain 85 186 6.3E-20 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain AMJ96_PD00554 6ceafa7b1ac5816c7ad6f82c0a83768d 724 Gene3D G3DSA:2.170.130.10 61 197 3.5E-34 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily AMJ96_PD00554 6ceafa7b1ac5816c7ad6f82c0a83768d 724 Pfam PF00593 TonB dependent receptor 263 723 2.5E-52 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel AMJ96_PD00554 6ceafa7b1ac5816c7ad6f82c0a83768d 724 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 86 722 1.3E-105 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 AMJ96_PD00554 6ceafa7b1ac5816c7ad6f82c0a83768d 724 Gene3D G3DSA:2.40.170.20 198 724 3.8E-123 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMJ96_CH04225 7fdc460209f62551142bbbc0ae193310 62 SUPERFAMILY SSF158997 8 61 2.62E-20 T 12-10-2018 AMJ96_CH04225 7fdc460209f62551142bbbc0ae193310 62 Pfam PF03966 Trm112p-like protein 9 48 2.2E-9 T 12-10-2018 IPR005651 Trm112-like AMJ96_CH04225 7fdc460209f62551142bbbc0ae193310 62 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 8 61 27.205 T 12-10-2018 IPR038053 Uncharacterised protein family UPF0434 AMJ96_CH04225 7fdc460209f62551142bbbc0ae193310 62 Gene3D G3DSA:2.20.25.10 15 62 2.2E-23 T 12-10-2018 AMJ96_CH02341 b4877524004f4be6de2c84f17aa96f96 80 Hamap MF_01926 Phosphoribosylformylglycinamidine synthase subunit PurS [purS]. 2 79 21.888 T 12-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMJ96_CH02341 b4877524004f4be6de2c84f17aa96f96 80 SUPERFAMILY SSF82697 2 78 7.67E-28 T 12-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMJ96_CH02341 b4877524004f4be6de2c84f17aa96f96 80 ProDom PD010362 PHOSPHORIBOSYLFORMYLGLYCINAMIDINE PURS SYNTHETASE SYNTHASE COMPONENT SYNTHASE LIGASE FGAM UPF0062 I 10 79 3.0E-31 T 12-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMJ96_CH02341 b4877524004f4be6de2c84f17aa96f96 80 Gene3D G3DSA:3.30.1280.10 1 80 7.9E-31 T 12-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AMJ96_CH02341 b4877524004f4be6de2c84f17aa96f96 80 TIGRFAM TIGR00302 TIGR00302: phosphoribosylformylglycinamidine synthase, purS protein 3 79 9.6E-29 T 12-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMJ96_CH02341 b4877524004f4be6de2c84f17aa96f96 80 Pfam PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase 3 78 4.8E-32 T 12-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMJ96_CH02984 d503f4da922c36113bd12b483c8db1bf 647 SUPERFAMILY SSF52540 78 370 9.81E-16 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02984 d503f4da922c36113bd12b483c8db1bf 647 SMART SM00763 22 383 3.2E-205 T 12-10-2018 IPR013153 PrkA AAA domain AMJ96_CH02984 d503f4da922c36113bd12b483c8db1bf 647 Pfam PF06798 PrkA serine protein kinase C-terminal domain 386 639 5.7E-75 T 12-10-2018 IPR010650 PrkA C-terminal domain AMJ96_CH02984 d503f4da922c36113bd12b483c8db1bf 647 PIRSF PIRSF000549 1 647 3.2E-280 T 12-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 AMJ96_CH02984 d503f4da922c36113bd12b483c8db1bf 647 Pfam PF08298 PrkA AAA domain 22 382 3.1E-176 T 12-10-2018 IPR013153 PrkA AAA domain AMJ96_CH01595 4aafccaed08715d0393db7f246946e23 413 Pfam PF13480 Acetyltransferase (GNAT) domain 203 358 8.0E-29 T 12-10-2018 IPR038740 BioF2-like, acetyltransferase domain KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 AMJ96_CH01595 4aafccaed08715d0393db7f246946e23 413 SUPERFAMILY SSF55729 192 373 1.48E-17 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH00555 a51ed30838a10da8433337f5d1cc8566 362 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 8 347 3.3E-116 T 12-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 AMJ96_CH00555 a51ed30838a10da8433337f5d1cc8566 362 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 80 99 - T 12-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 AMJ96_CH00555 a51ed30838a10da8433337f5d1cc8566 362 SUPERFAMILY SSF51395 6 352 1.25E-108 T 12-10-2018 AMJ96_CH00555 a51ed30838a10da8433337f5d1cc8566 362 Pfam PF01180 Dihydroorotate dehydrogenase 45 338 2.7E-92 T 12-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 AMJ96_CH00555 a51ed30838a10da8433337f5d1cc8566 362 Gene3D G3DSA:3.20.20.70 6 357 3.3E-133 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH00555 a51ed30838a10da8433337f5d1cc8566 362 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 5 334 42.91 T 12-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 AMJ96_CH00555 a51ed30838a10da8433337f5d1cc8566 362 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 290 310 - T 12-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 AMJ96_CH01485 2f8ce25641cb07eb87beb4916ac96f4e 239 Pfam PF03591 AzlC protein 25 164 2.6E-36 T 12-10-2018 IPR011606 Branched-chain amino acid transport, permease AMJ96_PB00044 0e69edada10e4aecf3d94345e911d8b8 242 Gene3D G3DSA:3.90.180.10 23 236 1.9E-36 T 12-10-2018 AMJ96_PB00044 0e69edada10e4aecf3d94345e911d8b8 242 Gene3D G3DSA:3.40.50.720 62 191 1.9E-36 T 12-10-2018 AMJ96_PB00044 0e69edada10e4aecf3d94345e911d8b8 242 SUPERFAMILY SSF51735 53 204 1.01E-22 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PB00044 0e69edada10e4aecf3d94345e911d8b8 242 SUPERFAMILY SSF50129 24 235 2.72E-5 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_CH00120 efe5f559bde7aa55ba5af066bcf7deea 229 Gene3D G3DSA:3.30.1230.10 18 104 1.2E-16 T 12-10-2018 IPR035931 YlxR-like superfamily AMJ96_CH00120 efe5f559bde7aa55ba5af066bcf7deea 229 SUPERFAMILY SSF64376 20 107 4.45E-24 T 12-10-2018 IPR035931 YlxR-like superfamily AMJ96_CH00120 efe5f559bde7aa55ba5af066bcf7deea 229 SUPERFAMILY SSF55315 105 194 9.89E-9 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like AMJ96_CH00120 efe5f559bde7aa55ba5af066bcf7deea 229 Pfam PF04296 Protein of unknown function (DUF448) 23 91 6.9E-21 T 12-10-2018 IPR007393 Domain of unknown function DUF448 AMJ96_CH00120 efe5f559bde7aa55ba5af066bcf7deea 229 Gene3D G3DSA:3.30.1330.30 105 205 1.6E-10 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like AMJ96_CH02715 ae14d9047961bbbb155675272786c613 151 Pfam PF05656 Protein of unknown function (DUF805) 54 141 2.1E-20 T 12-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 AMJ96_CH01216 6d7ca3b7f4c8f0f627ffcfd98a5cf6bb 140 SUPERFAMILY SSF82784 1 139 2.62E-42 T 12-10-2018 IPR036102 OsmC/Ohr superfamily AMJ96_CH01216 6d7ca3b7f4c8f0f627ffcfd98a5cf6bb 140 Gene3D G3DSA:3.30.300.20 45 140 2.5E-32 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta AMJ96_CH01216 6d7ca3b7f4c8f0f627ffcfd98a5cf6bb 140 Pfam PF02566 OsmC-like protein 41 135 1.5E-17 T 12-10-2018 IPR003718 OsmC/Ohr family AMJ96_CH01216 6d7ca3b7f4c8f0f627ffcfd98a5cf6bb 140 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 4 139 2.9E-53 T 12-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 AMJ96_CH01216 6d7ca3b7f4c8f0f627ffcfd98a5cf6bb 140 Gene3D G3DSA:2.20.25.10 2 44 1.8E-18 T 12-10-2018 AMJ96_PA00263 5ae1172f106dad0d4cbfb8336552479c 92 Pfam PF01402 Ribbon-helix-helix protein, copG family 5 42 5.4E-13 T 12-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 AMJ96_PA00263 5ae1172f106dad0d4cbfb8336552479c 92 SUPERFAMILY SSF47598 4 44 1.48E-12 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMJ96_PA00263 5ae1172f106dad0d4cbfb8336552479c 92 Gene3D G3DSA:1.10.1220.10 10 51 1.2E-6 T 12-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AMJ96_CH00706 8cba0bb595c6a882a9f0f5ee040b8dc9 168 Pfam PF03748 Flagellar basal body-associated protein FliL 79 167 8.0E-10 T 12-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 AMJ96_CH03414 fa62d819cc72b73f66c4e4c11a7fae62 357 SMART SM00633 74 354 1.2E-37 T 12-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMJ96_CH03414 fa62d819cc72b73f66c4e4c11a7fae62 357 SUPERFAMILY SSF51445 28 354 1.33E-81 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH03414 fa62d819cc72b73f66c4e4c11a7fae62 357 Gene3D G3DSA:3.20.20.80 16 356 5.1E-81 T 12-10-2018 AMJ96_CH03414 fa62d819cc72b73f66c4e4c11a7fae62 357 Pfam PF00331 Glycosyl hydrolase family 10 38 350 1.4E-67 T 12-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMJ96_CH03414 fa62d819cc72b73f66c4e4c11a7fae62 357 PRINTS PR00134 Glycosyl hydrolase family 10 signature 192 203 2.8E-7 T 12-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMJ96_CH03414 fa62d819cc72b73f66c4e4c11a7fae62 357 PRINTS PR00134 Glycosyl hydrolase family 10 signature 147 158 2.8E-7 T 12-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMJ96_CH03414 fa62d819cc72b73f66c4e4c11a7fae62 357 PRINTS PR00134 Glycosyl hydrolase family 10 signature 225 237 2.8E-7 T 12-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMJ96_CH03414 fa62d819cc72b73f66c4e4c11a7fae62 357 PRINTS PR00134 Glycosyl hydrolase family 10 signature 105 117 2.8E-7 T 12-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 AMJ96_CH02725 c0f3753fb021b1891e07a066f00111ad 70 SMART SM00357 4 70 6.8E-24 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 AMJ96_CH02725 c0f3753fb021b1891e07a066f00111ad 70 PIRSF PIRSF002599 1 70 4.8E-22 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 AMJ96_CH02725 c0f3753fb021b1891e07a066f00111ad 70 Pfam PF00313 'Cold-shock' DNA-binding domain 4 68 2.7E-24 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_CH02725 c0f3753fb021b1891e07a066f00111ad 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 16 35 - T 12-10-2018 IPR019844 Cold-shock conserved site AMJ96_CH02725 c0f3753fb021b1891e07a066f00111ad 70 SUPERFAMILY SSF50249 3 68 6.86E-21 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH02725 c0f3753fb021b1891e07a066f00111ad 70 PRINTS PR00050 Cold shock protein signature 41 59 5.3E-12 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_CH02725 c0f3753fb021b1891e07a066f00111ad 70 PRINTS PR00050 Cold shock protein signature 5 20 5.3E-12 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_CH02725 c0f3753fb021b1891e07a066f00111ad 70 PRINTS PR00050 Cold shock protein signature 26 35 5.3E-12 T 12-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AMJ96_CH02725 c0f3753fb021b1891e07a066f00111ad 70 Gene3D G3DSA:2.40.50.140 2 69 1.2E-26 T 12-10-2018 AMJ96_PA00154 d5a1542bab30ecd3357ee27a5245cd3e 316 Gene3D G3DSA:3.90.1580.10 38 292 6.9E-25 T 12-10-2018 AMJ96_PA00154 d5a1542bab30ecd3357ee27a5245cd3e 316 Pfam PF03781 Sulfatase-modifying factor enzyme 1 69 286 1.1E-39 T 12-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 AMJ96_PA00154 d5a1542bab30ecd3357ee27a5245cd3e 316 SUPERFAMILY SSF56436 48 286 1.67E-34 T 12-10-2018 IPR016187 C-type lectin fold AMJ96_CH01844 a18e3cca9519fd4a59f5e35dc3dfa7f1 119 Pfam PF04120 Low affinity iron permease 5 115 3.5E-23 T 12-10-2018 IPR007251 Low affinity iron permease, Fet4 GO:0055085 AMJ96_CH03442 a49079961ddc6836b4fa8f8884bed237 201 SUPERFAMILY SSF53474 6 198 1.65E-44 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH03442 a49079961ddc6836b4fa8f8884bed237 201 Gene3D G3DSA:3.40.50.1820 1 200 4.7E-48 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH03442 a49079961ddc6836b4fa8f8884bed237 201 Pfam PF01738 Dienelactone hydrolase family 75 182 3.5E-6 T 12-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 AMJ96_PC00133 3d4dd5e931fa13726bbf2ad2940f77d5 316 SUPERFAMILY SSF161098 75 299 2.62E-60 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00133 3d4dd5e931fa13726bbf2ad2940f77d5 316 Gene3D G3DSA:1.10.3720.10 71 315 9.3E-68 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00133 3d4dd5e931fa13726bbf2ad2940f77d5 316 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 310 2.4E-25 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00523 a2e9539467dfd8fc0c1111cfa255a7ae 293 PIRSF PIRSF028756 21 288 2.2E-104 T 12-10-2018 IPR016898 Polyphosphate kinase 2 KEGG: 00190+2.7.4.1 AMJ96_CH00523 a2e9539467dfd8fc0c1111cfa255a7ae 293 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 48 274 1.6E-97 T 12-10-2018 IPR022488 Polyphosphate kinase-2-related AMJ96_CH00523 a2e9539467dfd8fc0c1111cfa255a7ae 293 SUPERFAMILY SSF52540 82 266 1.87E-22 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00523 a2e9539467dfd8fc0c1111cfa255a7ae 293 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 48 275 2.8E-107 T 12-10-2018 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 KEGG: 00190+2.7.4.1 AMJ96_CH00523 a2e9539467dfd8fc0c1111cfa255a7ae 293 Gene3D G3DSA:3.40.50.300 9 293 1.7E-102 T 12-10-2018 AMJ96_CH04337 0bc1fe286b65da2610ed45f1628f9a4a 109 Pfam PF04324 BFD-like [2Fe-2S] binding domain 8 63 1.7E-4 T 12-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AMJ96_CH04284 263afe97d3bd424839785ce92b72060e 307 SUPERFAMILY SSF52317 17 296 1.97E-98 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH04284 263afe97d3bd424839785ce92b72060e 307 PIRSF PIRSF000450 1 307 9.7E-148 T 12-10-2018 IPR033752 MetA family AMJ96_CH04284 263afe97d3bd424839785ce92b72060e 307 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 292 1.0E-136 T 12-10-2018 AMJ96_CH04284 263afe97d3bd424839785ce92b72060e 307 Hamap MF_00295 Homoserine O-succinyltransferase [metAS]. 31 298 41.176 T 12-10-2018 IPR033752 MetA family AMJ96_CH04284 263afe97d3bd424839785ce92b72060e 307 Pfam PF04204 Homoserine O-succinyltransferase 2 298 5.9E-131 T 12-10-2018 IPR033752 MetA family AMJ96_CH04284 263afe97d3bd424839785ce92b72060e 307 Gene3D G3DSA:3.40.50.880 1 300 1.6E-119 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH04284 263afe97d3bd424839785ce92b72060e 307 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 300 7.6E-117 T 12-10-2018 IPR005697 Homoserine O-succinyltransferase MetA GO:0005737|GO:0008899|GO:0019281 AMJ96_CH01750 bc46668c3ff03af9ff96c2a5f30c9d0e 467 Pfam PF13180 PDZ domain 395 460 4.7E-10 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH01750 bc46668c3ff03af9ff96c2a5f30c9d0e 467 Pfam PF13180 PDZ domain 268 359 3.2E-14 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH01750 bc46668c3ff03af9ff96c2a5f30c9d0e 467 Gene3D G3DSA:2.30.42.10 376 464 1.0E-17 T 12-10-2018 AMJ96_CH01750 bc46668c3ff03af9ff96c2a5f30c9d0e 467 SUPERFAMILY SSF50156 218 363 6.31E-21 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 AMJ96_CH01750 bc46668c3ff03af9ff96c2a5f30c9d0e 467 PRINTS PR00834 HtrA/DegQ protease family signature 102 114 6.1E-51 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01750 bc46668c3ff03af9ff96c2a5f30c9d0e 467 PRINTS PR00834 HtrA/DegQ protease family signature 164 188 6.1E-51 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01750 bc46668c3ff03af9ff96c2a5f30c9d0e 467 PRINTS PR00834 HtrA/DegQ protease family signature 123 143 6.1E-51 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01750 bc46668c3ff03af9ff96c2a5f30c9d0e 467 PRINTS PR00834 HtrA/DegQ protease family signature 308 320 6.1E-51 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01750 bc46668c3ff03af9ff96c2a5f30c9d0e 467 PRINTS PR00834 HtrA/DegQ protease family signature 221 238 6.1E-51 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01750 bc46668c3ff03af9ff96c2a5f30c9d0e 467 PRINTS PR00834 HtrA/DegQ protease family signature 199 216 6.1E-51 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01750 bc46668c3ff03af9ff96c2a5f30c9d0e 467 SUPERFAMILY SSF50494 39 256 3.14E-63 T 12-10-2018 IPR009003 Peptidase S1, PA clan AMJ96_CH01750 bc46668c3ff03af9ff96c2a5f30c9d0e 467 Gene3D G3DSA:2.30.42.10 266 370 1.0E-23 T 12-10-2018 AMJ96_CH01750 bc46668c3ff03af9ff96c2a5f30c9d0e 467 SUPERFAMILY SSF50156 378 463 6.31E-16 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 AMJ96_CH01750 bc46668c3ff03af9ff96c2a5f30c9d0e 467 SMART SM00228 377 459 3.8E-6 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH01750 bc46668c3ff03af9ff96c2a5f30c9d0e 467 SMART SM00228 283 350 8.4E-10 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH01750 bc46668c3ff03af9ff96c2a5f30c9d0e 467 Gene3D G3DSA:2.40.10.120 40 258 4.6E-77 T 12-10-2018 AMJ96_CH01750 bc46668c3ff03af9ff96c2a5f30c9d0e 467 Pfam PF13365 Trypsin-like peptidase domain 93 228 3.3E-34 T 12-10-2018 AMJ96_CH01750 bc46668c3ff03af9ff96c2a5f30c9d0e 467 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 41 465 4.7E-149 T 12-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 AMJ96_PB00221 cc265eeb4bf401e05c6931a5c2039b12 161 Gene3D G3DSA:1.10.260.40 17 95 1.9E-13 T 12-10-2018 AMJ96_PB00221 cc265eeb4bf401e05c6931a5c2039b12 161 SMART SM00530 37 92 1.5E-9 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_PB00221 cc265eeb4bf401e05c6931a5c2039b12 161 SUPERFAMILY SSF47413 24 100 8.16E-20 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PB00221 cc265eeb4bf401e05c6931a5c2039b12 161 Pfam PF01381 Helix-turn-helix 38 90 4.3E-9 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_PA00086 35592a984d9d4e98610eaa72746915bd 395 PIRSF PIRSF000429 1 395 1.1E-111 T 12-10-2018 IPR002155 Thiolase GO:0016747 AMJ96_PA00086 35592a984d9d4e98610eaa72746915bd 395 Pfam PF02803 Thiolase, C-terminal domain 273 394 5.3E-41 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 AMJ96_PA00086 35592a984d9d4e98610eaa72746915bd 395 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 AMJ96_PA00086 35592a984d9d4e98610eaa72746915bd 395 ProSitePatterns PS00099 Thiolases active site. 376 389 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 AMJ96_PA00086 35592a984d9d4e98610eaa72746915bd 395 Gene3D G3DSA:3.40.47.10 129 392 8.9E-142 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_PA00086 35592a984d9d4e98610eaa72746915bd 395 Gene3D G3DSA:3.40.47.10 9 278 8.9E-142 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_PA00086 35592a984d9d4e98610eaa72746915bd 395 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 9 393 2.4E-126 T 12-10-2018 IPR002155 Thiolase GO:0016747 AMJ96_PA00086 35592a984d9d4e98610eaa72746915bd 395 SUPERFAMILY SSF53901 273 394 1.73E-39 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_PA00086 35592a984d9d4e98610eaa72746915bd 395 SUPERFAMILY SSF53901 7 272 3.93E-78 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 AMJ96_PA00086 35592a984d9d4e98610eaa72746915bd 395 Pfam PF00108 Thiolase, N-terminal domain 7 265 2.3E-88 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 AMJ96_CH02008 d3185fd0e0473b8d0cea2e4280aa187a 84 Pfam PF04226 Transglycosylase associated protein 37 83 5.6E-10 T 12-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 AMJ96_CH02440 0863187a738160e2be01b591ae8e2d2e 232 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 51 223 3.0E-62 T 12-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 AMJ96_CH02440 0863187a738160e2be01b591ae8e2d2e 232 SUPERFAMILY SSF100950 2 146 3.53E-42 T 12-10-2018 IPR037171 NagB/RpiA transferase-like AMJ96_CH02440 0863187a738160e2be01b591ae8e2d2e 232 Gene3D G3DSA:3.30.70.260 122 199 6.1E-81 T 12-10-2018 AMJ96_CH02440 0863187a738160e2be01b591ae8e2d2e 232 SUPERFAMILY SSF75445 128 211 7.19E-20 T 12-10-2018 AMJ96_CH02440 0863187a738160e2be01b591ae8e2d2e 232 Gene3D G3DSA:3.40.50.1360 9 215 6.1E-81 T 12-10-2018 AMJ96_CH02440 0863187a738160e2be01b591ae8e2d2e 232 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 228 32.615 T 12-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 AMJ96_CH02440 0863187a738160e2be01b591ae8e2d2e 232 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 7 224 3.2E-77 T 12-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 AMJ96_CH04185 02ececda14d2af5ef3ea2c4eab6bce48 235 SUPERFAMILY SSF52540 5 224 3.3E-67 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04185 02ececda14d2af5ef3ea2c4eab6bce48 235 SMART SM00382 34 220 1.0E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH04185 02ececda14d2af5ef3ea2c4eab6bce48 235 Gene3D G3DSA:3.40.50.300 3 233 1.3E-66 T 12-10-2018 AMJ96_CH04185 02ececda14d2af5ef3ea2c4eab6bce48 235 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH04185 02ececda14d2af5ef3ea2c4eab6bce48 235 Pfam PF00005 ABC transporter 25 171 1.8E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PC00047 4271a130e6f3866b7b37c14f58d1d373 159 Gene3D G3DSA:3.40.50.150 1 159 8.2E-61 T 12-10-2018 AMJ96_PC00047 4271a130e6f3866b7b37c14f58d1d373 159 SUPERFAMILY SSF53335 10 137 1.82E-5 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_PC00047 4271a130e6f3866b7b37c14f58d1d373 159 Pfam PF12692 S-adenosyl-L-methionine methyltransferase 1 158 2.5E-74 T 12-10-2018 IPR025690 Methyltransferase, putative AMJ96_PA00239 8455605cef220cf8bda27fe9e545c950 313 Gene3D G3DSA:3.20.20.150 1 311 1.2E-62 T 12-10-2018 AMJ96_PA00239 8455605cef220cf8bda27fe9e545c950 313 Pfam PF07582 AP endonuclease family 2 C terminus 269 309 2.0E-10 T 12-10-2018 IPR011418 AP endonuclease, family 2, C-terminal AMJ96_PA00239 8455605cef220cf8bda27fe9e545c950 313 SUPERFAMILY SSF51658 1 307 1.38E-41 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_PA00239 8455605cef220cf8bda27fe9e545c950 313 Pfam PF01261 Xylose isomerase-like TIM barrel 19 263 3.4E-29 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMJ96_CH00974 447bf0694a409349973cf9730cce6951 316 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 22 302 2.7E-97 T 12-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 AMJ96_CH00974 447bf0694a409349973cf9730cce6951 316 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 20 304 19.919 T 12-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 AMJ96_CH00974 447bf0694a409349973cf9730cce6951 316 Gene3D G3DSA:1.10.357.140 29 199 2.7E-16 T 12-10-2018 AMJ96_CH00974 447bf0694a409349973cf9730cce6951 316 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 74 96 - T 12-10-2018 IPR030470 UbiA prenyltransferase conserved site AMJ96_CH00974 447bf0694a409349973cf9730cce6951 316 Pfam PF01040 UbiA prenyltransferase family 36 275 8.4E-59 T 12-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 AMJ96_CH03803 dd58be7b5b8737bec6bc49d1db558bde 151 Pfam PF01957 NfeD-like C-terminal, partner-binding 13 150 4.4E-32 T 12-10-2018 IPR002810 NfeD-like, C-terminal domain AMJ96_CH03803 dd58be7b5b8737bec6bc49d1db558bde 151 Gene3D G3DSA:2.40.50.140 96 150 2.4E-7 T 12-10-2018 AMJ96_PA00103 7fe5cd8bc272418919cfe16dafa310df 261 SMART SM00346 8 101 4.6E-14 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMJ96_PA00103 7fe5cd8bc272418919cfe16dafa310df 261 Gene3D G3DSA:3.30.450.40 87 260 2.6E-41 T 12-10-2018 IPR029016 GAF-like domain superfamily AMJ96_PA00103 7fe5cd8bc272418919cfe16dafa310df 261 SUPERFAMILY SSF46785 10 78 3.73E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PA00103 7fe5cd8bc272418919cfe16dafa310df 261 Pfam PF09339 IclR helix-turn-helix domain 11 59 3.2E-12 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AMJ96_PA00103 7fe5cd8bc272418919cfe16dafa310df 261 Gene3D G3DSA:1.10.10.10 8 80 3.1E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PA00103 7fe5cd8bc272418919cfe16dafa310df 261 Pfam PF01614 Bacterial transcriptional regulator 133 250 2.7E-26 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal AMJ96_PA00103 7fe5cd8bc272418919cfe16dafa310df 261 SUPERFAMILY SSF55781 66 254 2.94E-36 T 12-10-2018 AMJ96_PC00217 23981b0121072f419bd1cc22bc68a778 241 SUPERFAMILY SSF52833 1 84 4.42E-16 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_PC00217 23981b0121072f419bd1cc22bc68a778 241 Gene3D G3DSA:1.20.1050.10 88 209 5.7E-92 T 12-10-2018 AMJ96_PC00217 23981b0121072f419bd1cc22bc68a778 241 Pfam PF14497 Glutathione S-transferase, C-terminal domain 111 219 7.3E-30 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal AMJ96_PC00217 23981b0121072f419bd1cc22bc68a778 241 SUPERFAMILY SSF47616 107 231 1.42E-22 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMJ96_PC00217 23981b0121072f419bd1cc22bc68a778 241 Gene3D G3DSA:3.40.30.10 3 238 5.7E-92 T 12-10-2018 AMJ96_PC00292 a1dd9e7c0e79b82dffb1ac5e9741e55f 531 Pfam PF00732 GMC oxidoreductase 4 294 7.0E-82 T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AMJ96_PC00292 a1dd9e7c0e79b82dffb1ac5e9741e55f 531 SUPERFAMILY SSF51905 3 530 2.59E-84 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00292 a1dd9e7c0e79b82dffb1ac5e9741e55f 531 PIRSF PIRSF000137 1 531 5.1E-141 T 12-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AMJ96_PC00292 a1dd9e7c0e79b82dffb1ac5e9741e55f 531 Pfam PF05199 GMC oxidoreductase 386 522 4.5E-37 T 12-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 AMJ96_PC00292 a1dd9e7c0e79b82dffb1ac5e9741e55f 531 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 253 267 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AMJ96_PC00292 a1dd9e7c0e79b82dffb1ac5e9741e55f 531 Gene3D G3DSA:3.30.560.10 42 467 2.6E-168 T 12-10-2018 AMJ96_PC00292 a1dd9e7c0e79b82dffb1ac5e9741e55f 531 Gene3D G3DSA:3.50.50.60 5 520 2.6E-168 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00292 a1dd9e7c0e79b82dffb1ac5e9741e55f 531 SUPERFAMILY SSF54373 289 472 3.04E-59 T 12-10-2018 AMJ96_CH02588 8fe8913d9b0f5053604b9a5dbe316960 204 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 10 195 3.3E-59 T 12-10-2018 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 KEGG: 00561+2.7.1.121 AMJ96_CH02588 8fe8913d9b0f5053604b9a5dbe316960 204 Gene3D G3DSA:1.25.40.340 6 198 2.3E-56 T 12-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AMJ96_CH02588 8fe8913d9b0f5053604b9a5dbe316960 204 SUPERFAMILY SSF101473 7 197 3.79E-50 T 12-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AMJ96_CH02588 8fe8913d9b0f5053604b9a5dbe316960 204 Pfam PF02734 DAK2 domain 32 195 1.1E-46 T 12-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AMJ96_CH02588 8fe8913d9b0f5053604b9a5dbe316960 204 SMART SM01120 32 196 2.5E-58 T 12-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AMJ96_CH00477 4acbcebda7564d622690944063adea3f 166 Gene3D G3DSA:3.30.1330.40 1 158 8.8E-43 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMJ96_CH00477 4acbcebda7564d622690944063adea3f 166 SUPERFAMILY SSF55298 2 158 7.57E-34 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMJ96_CH00477 4acbcebda7564d622690944063adea3f 166 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 5 151 5.9E-18 T 12-10-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AMJ96_CH02261 a82b48785b6f713a2afb5bdc6855973d 150 Gene3D G3DSA:3.10.20.400 11 112 1.7E-36 T 12-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 AMJ96_CH02261 a82b48785b6f713a2afb5bdc6855973d 150 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 69 121 6.0E-24 T 12-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 AMJ96_CH02261 a82b48785b6f713a2afb5bdc6855973d 150 SUPERFAMILY SSF141734 24 128 1.83E-44 T 12-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 AMJ96_CH02261 a82b48785b6f713a2afb5bdc6855973d 150 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 20 125 30.199 T 12-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 AMJ96_CH02261 a82b48785b6f713a2afb5bdc6855973d 150 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 46 121 1.0E-33 T 12-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 AMJ96_CH02544 1c97420e05aec2bedb902c8ab3aa01fe 160 Pfam PF07977 FabA-like domain 4 122 3.0E-19 T 12-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMJ96_CH02544 1c97420e05aec2bedb902c8ab3aa01fe 160 Gene3D G3DSA:3.10.129.10 4 129 3.7E-30 T 12-10-2018 AMJ96_CH02544 1c97420e05aec2bedb902c8ab3aa01fe 160 SUPERFAMILY SSF54637 6 125 3.47E-28 T 12-10-2018 IPR029069 HotDog domain superfamily AMJ96_PD00295 f9c0ad73aa6a6c6b632a805a54b7c286 341 Pfam PF00005 ABC transporter 20 161 2.9E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00295 f9c0ad73aa6a6c6b632a805a54b7c286 341 Gene3D G3DSA:3.40.50.300 1 239 1.1E-72 T 12-10-2018 AMJ96_PD00295 f9c0ad73aa6a6c6b632a805a54b7c286 341 SUPERFAMILY SSF50331 237 333 2.18E-19 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_PD00295 f9c0ad73aa6a6c6b632a805a54b7c286 341 Gene3D G3DSA:2.40.50.140 263 318 3.1E-13 T 12-10-2018 AMJ96_PD00295 f9c0ad73aa6a6c6b632a805a54b7c286 341 Gene3D G3DSA:2.40.50.100 252 335 3.1E-13 T 12-10-2018 AMJ96_PD00295 f9c0ad73aa6a6c6b632a805a54b7c286 341 SUPERFAMILY SSF52540 4 242 1.5E-82 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00295 f9c0ad73aa6a6c6b632a805a54b7c286 341 SMART SM00382 28 212 3.5E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00295 f9c0ad73aa6a6c6b632a805a54b7c286 341 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00295 f9c0ad73aa6a6c6b632a805a54b7c286 341 Pfam PF08402 TOBE domain 257 326 1.3E-9 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_CH03836 db8b7cf6020504f6b20105b3b5799dd1 1107 Gene3D G3DSA:3.10.620.30 109 283 9.2E-28 T 12-10-2018 AMJ96_CH03836 db8b7cf6020504f6b20105b3b5799dd1 1107 SMART SM00460 173 249 5.0E-18 T 12-10-2018 IPR002931 Transglutaminase-like AMJ96_CH03836 db8b7cf6020504f6b20105b3b5799dd1 1107 Pfam PF01841 Transglutaminase-like superfamily 142 247 2.2E-18 T 12-10-2018 IPR002931 Transglutaminase-like AMJ96_CH03836 db8b7cf6020504f6b20105b3b5799dd1 1107 Pfam PF09899 Putative amidoligase enzyme (DUF2126) 279 1102 0.0 T 12-10-2018 IPR018667 Domain of unknown function DUF2126 AMJ96_CH03836 db8b7cf6020504f6b20105b3b5799dd1 1107 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 6 83 2.8E-26 T 12-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal AMJ96_CH03836 db8b7cf6020504f6b20105b3b5799dd1 1107 SUPERFAMILY SSF54001 9 339 1.04E-69 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMJ96_CH02113 e9eaa73163cfdba47c2acc40b1e6826a 349 ProSitePatterns PS00211 ABC transporters family signature. 176 190 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02113 e9eaa73163cfdba47c2acc40b1e6826a 349 Gene3D G3DSA:3.40.50.300 47 298 5.0E-80 T 12-10-2018 AMJ96_CH02113 e9eaa73163cfdba47c2acc40b1e6826a 349 Pfam PF00005 ABC transporter 56 203 2.5E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02113 e9eaa73163cfdba47c2acc40b1e6826a 349 SUPERFAMILY SSF52540 54 280 4.43E-75 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02113 e9eaa73163cfdba47c2acc40b1e6826a 349 SMART SM00382 64 253 8.7E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00274 d20b9b7a7e5f5aaaf4e3dc4b0e6224df 134 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 28.256 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH00274 d20b9b7a7e5f5aaaf4e3dc4b0e6224df 134 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH00274 d20b9b7a7e5f5aaaf4e3dc4b0e6224df 134 Gene3D G3DSA:1.10.720.90 2 55 5.0E-21 T 12-10-2018 AMJ96_CH00274 d20b9b7a7e5f5aaaf4e3dc4b0e6224df 134 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 8.5E-47 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH00274 d20b9b7a7e5f5aaaf4e3dc4b0e6224df 134 Gene3D G3DSA:1.10.1900.20 56 119 1.4E-29 T 12-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH00274 d20b9b7a7e5f5aaaf4e3dc4b0e6224df 134 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 23 71 2.0E-20 T 12-10-2018 AMJ96_CH00274 d20b9b7a7e5f5aaaf4e3dc4b0e6224df 134 SUPERFAMILY SSF74731 3 117 1.57E-47 T 12-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH00274 d20b9b7a7e5f5aaaf4e3dc4b0e6224df 134 Pfam PF00453 Ribosomal protein L20 3 109 2.4E-47 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH00274 d20b9b7a7e5f5aaaf4e3dc4b0e6224df 134 PRINTS PR00062 Ribosomal protein L20 signature 12 41 5.1E-34 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH00274 d20b9b7a7e5f5aaaf4e3dc4b0e6224df 134 PRINTS PR00062 Ribosomal protein L20 signature 75 101 5.1E-34 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH00274 d20b9b7a7e5f5aaaf4e3dc4b0e6224df 134 PRINTS PR00062 Ribosomal protein L20 signature 42 71 5.1E-34 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH00296 c83c5c0cb9a253f8360f17334338f4ce 157 SUPERFAMILY SSF55826 5 155 1.57E-43 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMJ96_CH00296 c83c5c0cb9a253f8360f17334338f4ce 157 Pfam PF04073 Aminoacyl-tRNA editing domain 35 145 1.3E-24 T 12-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AMJ96_CH00296 c83c5c0cb9a253f8360f17334338f4ce 157 PIRSF PIRSF006181 1 157 1.2E-50 T 12-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC AMJ96_CH00296 c83c5c0cb9a253f8360f17334338f4ce 157 Gene3D G3DSA:3.90.960.10 1 157 7.2E-51 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 AMJ96_CH00296 c83c5c0cb9a253f8360f17334338f4ce 157 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 5 154 1.6E-53 T 12-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC AMJ96_CH02808 16cb68aa67d296675aba1f0f9235f496 390 SUPERFAMILY SSF53335 131 384 6.69E-33 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH02808 16cb68aa67d296675aba1f0f9235f496 390 Pfam PF08241 Methyltransferase domain 163 260 1.2E-17 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 AMJ96_CH02808 16cb68aa67d296675aba1f0f9235f496 390 Gene3D G3DSA:3.40.50.150 104 324 8.7E-32 T 12-10-2018 AMJ96_CH01619 2ecc63c76e6f92607df347ab3560528d 209 Gene3D G3DSA:3.90.226.10 4 203 6.4E-82 T 12-10-2018 AMJ96_CH01619 2ecc63c76e6f92607df347ab3560528d 209 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 9 199 5.1E-95 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMJ96_CH01619 2ecc63c76e6f92607df347ab3560528d 209 Pfam PF00574 Clp protease 21 200 4.5E-86 T 12-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AMJ96_CH01619 2ecc63c76e6f92607df347ab3560528d 209 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 98 109 - T 12-10-2018 IPR018215 ClpP, Ser active site AMJ96_CH01619 2ecc63c76e6f92607df347ab3560528d 209 PRINTS PR00127 Clp protease catalytic subunit P signature 67 87 2.1E-49 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMJ96_CH01619 2ecc63c76e6f92607df347ab3560528d 209 PRINTS PR00127 Clp protease catalytic subunit P signature 27 42 2.1E-49 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMJ96_CH01619 2ecc63c76e6f92607df347ab3560528d 209 PRINTS PR00127 Clp protease catalytic subunit P signature 176 195 2.1E-49 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMJ96_CH01619 2ecc63c76e6f92607df347ab3560528d 209 PRINTS PR00127 Clp protease catalytic subunit P signature 98 115 2.1E-49 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMJ96_CH01619 2ecc63c76e6f92607df347ab3560528d 209 PRINTS PR00127 Clp protease catalytic subunit P signature 119 138 2.1E-49 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMJ96_CH01619 2ecc63c76e6f92607df347ab3560528d 209 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 11 201 41.738 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AMJ96_CH01619 2ecc63c76e6f92607df347ab3560528d 209 SUPERFAMILY SSF52096 18 201 4.23E-73 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_CH01619 2ecc63c76e6f92607df347ab3560528d 209 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 120 133 - T 12-10-2018 IPR033135 ClpP, histidine active site AMJ96_CH03878 813cb97a384e509b3d7e9028cc0bdd23 384 Pfam PF00990 Diguanylate cyclase, GGDEF domain 223 373 1.7E-36 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH03878 813cb97a384e509b3d7e9028cc0bdd23 384 SMART SM00267 212 377 6.4E-53 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH03878 813cb97a384e509b3d7e9028cc0bdd23 384 Gene3D G3DSA:3.30.70.270 210 378 3.1E-49 T 12-10-2018 AMJ96_CH03878 813cb97a384e509b3d7e9028cc0bdd23 384 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 220 376 2.6E-39 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH03878 813cb97a384e509b3d7e9028cc0bdd23 384 SUPERFAMILY SSF55073 228 377 4.63E-42 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_PB00211 1ea16a4b6bdcf7e3f1da97639b32648b 639 TIGRFAM TIGR02767 TraG-Ti: Ti-type conjugative transfer system protein TraG 10 634 0.0 T 12-10-2018 IPR014135 Ti-type conjugative transfer system, TraG AMJ96_PB00211 1ea16a4b6bdcf7e3f1da97639b32648b 639 SUPERFAMILY SSF52540 198 626 1.17E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PB00211 1ea16a4b6bdcf7e3f1da97639b32648b 639 Gene3D G3DSA:3.40.50.300 364 630 6.3E-35 T 12-10-2018 AMJ96_PB00211 1ea16a4b6bdcf7e3f1da97639b32648b 639 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 168 634 3.8E-96 T 12-10-2018 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 AMJ96_PC00335 401bfb7490fe6bfdd1d5aca3a9d93e81 165 Pfam PF08837 Protein of unknown function (DUF1810) 7 122 2.7E-50 T 12-10-2018 IPR014937 Protein of unknown function DUF1810 AMJ96_PC00335 401bfb7490fe6bfdd1d5aca3a9d93e81 165 SUPERFAMILY SSF140736 6 122 9.81E-51 T 12-10-2018 IPR036287 Rv1873-like superfamily AMJ96_PC00335 401bfb7490fe6bfdd1d5aca3a9d93e81 165 Gene3D G3DSA:1.25.40.380 2 136 9.8E-49 T 12-10-2018 IPR036287 Rv1873-like superfamily AMJ96_CH01237 f65d927edb3747725628f221eee938f2 396 SMART SM00044 186 379 8.4E-5 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH01237 f65d927edb3747725628f221eee938f2 396 SUPERFAMILY SSF55781 77 176 7.36E-6 T 12-10-2018 AMJ96_CH01237 f65d927edb3747725628f221eee938f2 396 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 221 352 2.6E-15 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH01237 f65d927edb3747725628f221eee938f2 396 Gene3D G3DSA:3.30.450.40 44 189 3.6E-6 T 12-10-2018 IPR029016 GAF-like domain superfamily AMJ96_CH01237 f65d927edb3747725628f221eee938f2 396 Gene3D G3DSA:3.30.70.1230 212 396 9.2E-40 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH01237 f65d927edb3747725628f221eee938f2 396 SUPERFAMILY SSF55073 218 395 8.63E-41 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03817 abddcd789b1d089f04bae6b85ed5e19a 257 Pfam PF00459 Inositol monophosphatase family 17 256 1.8E-43 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH03817 abddcd789b1d089f04bae6b85ed5e19a 257 Gene3D G3DSA:3.30.540.10 4 136 2.6E-36 T 12-10-2018 AMJ96_CH03817 abddcd789b1d089f04bae6b85ed5e19a 257 SUPERFAMILY SSF56655 4 256 7.33E-67 T 12-10-2018 AMJ96_CH03817 abddcd789b1d089f04bae6b85ed5e19a 257 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 80 93 - T 12-10-2018 IPR020583 Inositol monophosphatase, metal-binding site AMJ96_CH03817 abddcd789b1d089f04bae6b85ed5e19a 257 Gene3D G3DSA:3.40.190.80 143 256 4.0E-29 T 12-10-2018 AMJ96_CH03817 abddcd789b1d089f04bae6b85ed5e19a 257 TIGRFAM TIGR02067 his_9_HisN: histidinol-phosphatase 5 256 2.4E-94 T 12-10-2018 IPR011809 Histidinol-phosphate phosphatase, putative, inositol monophosphatase GO:0004401 KEGG: 00340+3.1.3.15 AMJ96_CH03817 abddcd789b1d089f04bae6b85ed5e19a 257 PRINTS PR00377 Inositol monophosphatase superfamily signature 80 96 2.2E-18 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH03817 abddcd789b1d089f04bae6b85ed5e19a 257 PRINTS PR00377 Inositol monophosphatase superfamily signature 206 230 2.2E-18 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH03817 abddcd789b1d089f04bae6b85ed5e19a 257 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 2.2E-18 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH03817 abddcd789b1d089f04bae6b85ed5e19a 257 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 2.2E-18 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_PD00620 c320483da050eca3bc667e3ad040658d 647 SUPERFAMILY SSF53850 76 632 1.07E-84 T 12-10-2018 AMJ96_PD00620 c320483da050eca3bc667e3ad040658d 647 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 111 527 5.6E-73 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_PD00620 c320483da050eca3bc667e3ad040658d 647 Gene3D G3DSA:3.10.105.10 362 608 3.0E-47 T 12-10-2018 AMJ96_PD00620 c320483da050eca3bc667e3ad040658d 647 Gene3D G3DSA:3.40.190.10 60 361 1.3E-43 T 12-10-2018 AMJ96_PD00435 e56c94eb9687990cef4df32e6c214585 376 Gene3D G3DSA:3.10.580.10 304 366 1.2E-5 T 12-10-2018 AMJ96_PD00435 e56c94eb9687990cef4df32e6c214585 376 SUPERFAMILY SSF54631 248 363 4.5E-20 T 12-10-2018 AMJ96_PD00435 e56c94eb9687990cef4df32e6c214585 376 Pfam PF00571 CBS domain 252 302 2.2E-4 T 12-10-2018 IPR000644 CBS domain AMJ96_PD00435 e56c94eb9687990cef4df32e6c214585 376 Pfam PF00571 CBS domain 321 362 4.1E-5 T 12-10-2018 IPR000644 CBS domain AMJ96_PD00435 e56c94eb9687990cef4df32e6c214585 376 Gene3D G3DSA:3.10.580.10 203 303 3.1E-10 T 12-10-2018 AMJ96_PD00435 e56c94eb9687990cef4df32e6c214585 376 Pfam PF04982 HPP family 63 183 3.3E-37 T 12-10-2018 IPR007065 HPP AMJ96_PA00207 59cc741d1dde2c67412f35c8bf19bf10 112 SUPERFAMILY SSF54909 1 102 3.91E-13 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_PB00103 f31014f1684c178da78427d3fc2e807a 217 Pfam PF00813 FliP family 14 211 5.5E-60 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMJ96_PB00103 f31014f1684c178da78427d3fc2e807a 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 11 30 4.2E-61 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMJ96_PB00103 f31014f1684c178da78427d3fc2e807a 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 144 164 4.2E-61 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMJ96_PB00103 f31014f1684c178da78427d3fc2e807a 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 165 186 4.2E-61 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMJ96_PB00103 f31014f1684c178da78427d3fc2e807a 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 50 69 4.2E-61 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMJ96_PB00103 f31014f1684c178da78427d3fc2e807a 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 30 50 4.2E-61 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMJ96_PB00103 f31014f1684c178da78427d3fc2e807a 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 189 214 4.2E-61 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMJ96_PB00103 f31014f1684c178da78427d3fc2e807a 217 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 144 159 - T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMJ96_PB00103 f31014f1684c178da78427d3fc2e807a 217 TIGRFAM TIGR01102 yscR: type III secretion apparatus protein, YscR/HrcR family 12 211 3.0E-71 T 12-10-2018 IPR005773 Yop virulence translocation protein R GO:0015031|GO:0016021 AMJ96_PB00103 f31014f1684c178da78427d3fc2e807a 217 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 192 204 - T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AMJ96_CH01082 42636319693f7847574e98d4a8f58379 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 254 7.4E-52 T 12-10-2018 AMJ96_CH01082 42636319693f7847574e98d4a8f58379 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 4.1E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01082 42636319693f7847574e98d4a8f58379 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 4.1E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01082 42636319693f7847574e98d4a8f58379 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.1E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01082 42636319693f7847574e98d4a8f58379 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 4.1E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01082 42636319693f7847574e98d4a8f58379 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 4.1E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01082 42636319693f7847574e98d4a8f58379 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 4.1E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01082 42636319693f7847574e98d4a8f58379 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 3.5E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01082 42636319693f7847574e98d4a8f58379 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 3.5E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01082 42636319693f7847574e98d4a8f58379 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 3.5E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01082 42636319693f7847574e98d4a8f58379 255 Gene3D G3DSA:3.40.50.720 1 254 3.5E-70 T 12-10-2018 AMJ96_CH01082 42636319693f7847574e98d4a8f58379 255 SUPERFAMILY SSF51735 7 255 1.26E-68 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00084 328d7a6b3ffb20ac2581ec5c137c257f 267 Gene3D G3DSA:3.40.630.40 1 263 8.7E-68 T 12-10-2018 AMJ96_PC00084 328d7a6b3ffb20ac2581ec5c137c257f 267 Pfam PF05013 N-formylglutamate amidohydrolase 12 228 7.5E-68 T 12-10-2018 IPR007709 N-formylglutamate amidohydrolase AMJ96_PC00084 328d7a6b3ffb20ac2581ec5c137c257f 267 SUPERFAMILY SSF53187 5 262 1.11E-81 T 12-10-2018 AMJ96_PC00084 328d7a6b3ffb20ac2581ec5c137c257f 267 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 5 262 1.4E-119 T 12-10-2018 IPR010247 N-formylglutamate deformylase AMJ96_CH03037 3484e135b52a4212331ce1d15fa29bcc 265 SMART SM00641 55 161 5.9E-24 T 12-10-2018 IPR018077 Glycoside hydrolase, family 25 subgroup AMJ96_CH03037 3484e135b52a4212331ce1d15fa29bcc 265 Gene3D G3DSA:3.20.20.80 45 258 1.5E-71 T 12-10-2018 AMJ96_CH03037 3484e135b52a4212331ce1d15fa29bcc 265 Pfam PF01183 Glycosyl hydrolases family 25 58 236 7.6E-61 T 12-10-2018 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 AMJ96_CH03037 3484e135b52a4212331ce1d15fa29bcc 265 SUPERFAMILY SSF51445 53 257 5.05E-68 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH00412 875b21ea573bd94be2142b28e08cd127 286 Gene3D G3DSA:3.30.1330.30 17 119 2.9E-26 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like AMJ96_CH00412 875b21ea573bd94be2142b28e08cd127 286 Gene3D G3DSA:3.40.1280.10 126 283 2.3E-51 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AMJ96_CH00412 875b21ea573bd94be2142b28e08cd127 286 SUPERFAMILY SSF55315 18 119 1.86E-23 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like AMJ96_CH00412 875b21ea573bd94be2142b28e08cd127 286 SMART SM00967 46 122 6.0E-11 T 12-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AMJ96_CH00412 875b21ea573bd94be2142b28e08cd127 286 SUPERFAMILY SSF75217 121 280 4.25E-43 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases AMJ96_CH00412 875b21ea573bd94be2142b28e08cd127 286 Pfam PF00588 SpoU rRNA Methylase family 135 273 7.3E-36 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AMJ96_CH00412 875b21ea573bd94be2142b28e08cd127 286 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 46 118 6.1E-7 T 12-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AMJ96_CH02866 5e1fb80c35a0dba32d488c1862299077 132 SUPERFAMILY SSF54427 4 128 2.82E-30 T 12-10-2018 IPR032710 NTF2-like domain superfamily AMJ96_CH02866 5e1fb80c35a0dba32d488c1862299077 132 Pfam PF07366 SnoaL-like polyketide cyclase 8 128 2.8E-35 T 12-10-2018 IPR009959 Polyketide cyclase SnoaL-like GO:0030638 MetaCyc: PWY-7352|MetaCyc: PWY-7354 AMJ96_CH02866 5e1fb80c35a0dba32d488c1862299077 132 Gene3D G3DSA:3.10.450.50 3 128 1.5E-31 T 12-10-2018 AMJ96_PD00651 19c429842dca3cb95e7652ed31715fdb 413 Gene3D G3DSA:3.40.640.10 78 314 6.5E-76 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_PD00651 19c429842dca3cb95e7652ed31715fdb 413 Gene3D G3DSA:3.90.1150.10 60 400 6.5E-76 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_PD00651 19c429842dca3cb95e7652ed31715fdb 413 SUPERFAMILY SSF53383 40 412 5.17E-55 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_PD00651 19c429842dca3cb95e7652ed31715fdb 413 Pfam PF00155 Aminotransferase class I and II 89 407 2.3E-17 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_PA00211 2d81b3d0198eff09fb2380d05f474383 491 Pfam PF00474 Sodium:solute symporter family 44 434 4.3E-18 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 AMJ96_PA00211 2d81b3d0198eff09fb2380d05f474383 491 Gene3D G3DSA:1.20.1730.10 30 483 1.0E-23 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily AMJ96_CH02875 e101f941cec3e3c79d773ec6be452e25 108 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 50 93 1.0E-9 T 12-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB AMJ96_CH02875 e101f941cec3e3c79d773ec6be452e25 108 Gene3D G3DSA:3.10.450.160 35 108 1.2E-10 T 12-10-2018 AMJ96_CH02875 e101f941cec3e3c79d773ec6be452e25 108 Pfam PF11776 Nickel/cobalt transporter regulator 53 102 1.4E-18 T 12-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB AMJ96_CH00105 8179785c19836a2cef463fe7bbba354e 262 Pfam PF02698 DUF218 domain 80 246 6.4E-24 T 12-10-2018 IPR003848 Domain of unknown function DUF218 AMJ96_CH00893 cb9da1b8adadfb94cc45c523811614a8 183 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 15 153 1.9E-39 T 12-10-2018 IPR001453 MoaB/Mog domain AMJ96_CH00893 cb9da1b8adadfb94cc45c523811614a8 183 SMART SM00852 16 160 1.6E-37 T 12-10-2018 IPR001453 MoaB/Mog domain AMJ96_CH00893 cb9da1b8adadfb94cc45c523811614a8 183 Gene3D G3DSA:3.40.980.10 5 173 1.8E-54 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMJ96_CH00893 cb9da1b8adadfb94cc45c523811614a8 183 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 10 171 2.1E-79 T 12-10-2018 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 AMJ96_CH00893 cb9da1b8adadfb94cc45c523811614a8 183 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 74 87 - T 12-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 AMJ96_CH00893 cb9da1b8adadfb94cc45c523811614a8 183 PIRSF PIRSF006443 1 168 9.9E-64 T 12-10-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 AMJ96_CH00893 cb9da1b8adadfb94cc45c523811614a8 183 SUPERFAMILY SSF53218 7 171 3.66E-50 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily AMJ96_CH00893 cb9da1b8adadfb94cc45c523811614a8 183 Pfam PF00994 Probable molybdopterin binding domain 16 157 6.4E-41 T 12-10-2018 IPR001453 MoaB/Mog domain AMJ96_CH00659 ab57d7ede2c287cfb5d86550859f09ee 144 Pfam PF02566 OsmC-like protein 43 138 6.6E-17 T 12-10-2018 IPR003718 OsmC/Ohr family AMJ96_CH00659 ab57d7ede2c287cfb5d86550859f09ee 144 SUPERFAMILY SSF82784 20 138 3.93E-23 T 12-10-2018 IPR036102 OsmC/Ohr superfamily AMJ96_CH00659 ab57d7ede2c287cfb5d86550859f09ee 144 Gene3D G3DSA:3.30.300.20 19 141 4.0E-23 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta AMJ96_CH02224 0985e66488165feb427304af5c2c18b0 54 SUPERFAMILY SSF82057 1 54 2.06E-17 T 12-10-2018 AMJ96_CH02224 0985e66488165feb427304af5c2c18b0 54 Gene3D G3DSA:2.30.30.40 1 54 3.1E-23 T 12-10-2018 AMJ96_CH02224 0985e66488165feb427304af5c2c18b0 54 Pfam PF03831 PhnA domain 1 54 3.3E-21 T 12-10-2018 IPR013988 PhnA protein, C-terminal AMJ96_CH01466 2bc581c8be110f5326f2322c87cbef14 335 Gene3D G3DSA:3.40.50.1820 19 328 5.4E-38 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01466 2bc581c8be110f5326f2322c87cbef14 335 Pfam PF00561 alpha/beta hydrolase fold 50 176 3.0E-18 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH01466 2bc581c8be110f5326f2322c87cbef14 335 Pfam PF00326 Prolyl oligopeptidase family 258 333 1.5E-5 T 12-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AMJ96_CH01466 2bc581c8be110f5326f2322c87cbef14 335 SUPERFAMILY SSF53474 7 334 9.88E-44 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH04218 2316c65576024ac84e3fc7956962b884 267 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 7 258 1.7E-17 T 12-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase AMJ96_CH04218 2316c65576024ac84e3fc7956962b884 267 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 5 265 4.7E-50 T 12-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 AMJ96_CH04218 2316c65576024ac84e3fc7956962b884 267 Gene3D G3DSA:3.60.10.10 4 267 8.3E-56 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMJ96_CH04218 2316c65576024ac84e3fc7956962b884 267 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 29 38 - T 12-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 AMJ96_CH04218 2316c65576024ac84e3fc7956962b884 267 SUPERFAMILY SSF56219 3 266 6.81E-69 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMJ96_PD00557 6db75e022ac54dd02405199bbcfbe37b 157 SUPERFAMILY SSF49764 14 138 1.08E-21 T 12-10-2018 IPR008978 HSP20-like chaperone AMJ96_PD00557 6db75e022ac54dd02405199bbcfbe37b 157 Gene3D G3DSA:2.60.40.790 35 139 1.3E-21 T 12-10-2018 IPR008978 HSP20-like chaperone AMJ96_PD00557 6db75e022ac54dd02405199bbcfbe37b 157 Pfam PF00011 Hsp20/alpha crystallin family 43 138 1.4E-16 T 12-10-2018 IPR002068 Alpha crystallin/Hsp20 domain AMJ96_PD00645 187d2d14dd8cdfa6940865e525792a3d 453 Pfam PF00202 Aminotransferase class-III 39 361 1.3E-48 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_PD00645 187d2d14dd8cdfa6940865e525792a3d 453 Gene3D G3DSA:3.40.640.10 79 339 2.6E-137 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_PD00645 187d2d14dd8cdfa6940865e525792a3d 453 Gene3D G3DSA:3.90.1150.10 22 437 2.6E-137 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_PD00645 187d2d14dd8cdfa6940865e525792a3d 453 SUPERFAMILY SSF53383 15 443 6.97E-84 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_PC00077 57883c43d4590c9f37df1a598fbd516c 244 Gene3D G3DSA:3.40.830.10 1 231 2.7E-79 T 12-10-2018 AMJ96_PC00077 57883c43d4590c9f37df1a598fbd516c 244 PIRSF PIRSF006157 2 232 3.3E-81 T 12-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 AMJ96_PC00077 57883c43d4590c9f37df1a598fbd516c 244 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 7 230 3.6E-37 T 12-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 AMJ96_PC00077 57883c43d4590c9f37df1a598fbd516c 244 SUPERFAMILY SSF53213 5 231 4.97E-79 T 12-10-2018 AMJ96_CH02918 66835350529cc02a0d27cc69b37bdea3 334 SUPERFAMILY SSF88659 20 57 8.41E-6 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_CH02918 66835350529cc02a0d27cc69b37bdea3 334 Pfam PF04198 Putative sugar-binding domain 68 320 4.6E-63 T 12-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 AMJ96_CH02918 66835350529cc02a0d27cc69b37bdea3 334 Gene3D G3DSA:3.40.50.1360 63 321 9.5E-69 T 12-10-2018 AMJ96_CH02918 66835350529cc02a0d27cc69b37bdea3 334 SUPERFAMILY SSF100950 72 320 1.51E-63 T 12-10-2018 IPR037171 NagB/RpiA transferase-like AMJ96_CH02918 66835350529cc02a0d27cc69b37bdea3 334 Gene3D G3DSA:1.10.10.10 1 62 4.3E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02906 f263fc93e3c2634a4aef723b8e209935 476 Pfam PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus 194 362 1.2E-33 T 12-10-2018 IPR007525 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal AMJ96_CH02906 f263fc93e3c2634a4aef723b8e209935 476 Pfam PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term 106 185 9.4E-16 T 12-10-2018 IPR007516 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal AMJ96_CH02450 3a74f204aa778895ecb011d688af1a3e 396 Pfam PF06772 Bacterial low temperature requirement A protein (LtrA) 20 380 9.0E-109 T 12-10-2018 IPR010640 Low temperature requirement A AMJ96_CH00502 c4bbba5875c39be20e5b30f830a75685 314 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00502 c4bbba5875c39be20e5b30f830a75685 314 SMART SM00382 28 215 2.5E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00502 c4bbba5875c39be20e5b30f830a75685 314 Pfam PF00005 ABC transporter 19 165 4.0E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00502 c4bbba5875c39be20e5b30f830a75685 314 Gene3D G3DSA:3.40.50.300 1 267 1.5E-75 T 12-10-2018 AMJ96_CH00502 c4bbba5875c39be20e5b30f830a75685 314 SUPERFAMILY SSF52540 3 242 2.46E-76 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03421 9590a368873e874466a7c74a7beb7612 312 Pfam PF00535 Glycosyl transferase family 2 7 173 1.5E-29 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_CH03421 9590a368873e874466a7c74a7beb7612 312 SUPERFAMILY SSF53448 6 301 1.97E-47 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03421 9590a368873e874466a7c74a7beb7612 312 Gene3D G3DSA:3.90.550.10 3 233 2.2E-43 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_PD00297 e5b05b7cf99ed810568d8eeca66a925f 328 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 318 4.1E-19 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00297 e5b05b7cf99ed810568d8eeca66a925f 328 Gene3D G3DSA:1.10.3720.10 70 322 2.6E-65 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00297 e5b05b7cf99ed810568d8eeca66a925f 328 SUPERFAMILY SSF161098 90 313 3.27E-58 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00112 ed399bf067497e2381a7d0e2e749a574 386 Gene3D G3DSA:3.30.390.10 20 375 3.6E-121 T 12-10-2018 IPR029017 Enolase-like, N-terminal AMJ96_PC00112 ed399bf067497e2381a7d0e2e749a574 386 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 17 113 2.4E-19 T 12-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMJ96_PC00112 ed399bf067497e2381a7d0e2e749a574 386 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 189 220 - T 12-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AMJ96_PC00112 ed399bf067497e2381a7d0e2e749a574 386 SUPERFAMILY SSF54826 6 118 4.46E-29 T 12-10-2018 AMJ96_PC00112 ed399bf067497e2381a7d0e2e749a574 386 Pfam PF13378 Enolase C-terminal domain-like 137 361 1.8E-45 T 12-10-2018 IPR029065 Enolase C-terminal domain-like AMJ96_PC00112 ed399bf067497e2381a7d0e2e749a574 386 SMART SM00922 132 239 3.8E-12 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMJ96_PC00112 ed399bf067497e2381a7d0e2e749a574 386 Gene3D G3DSA:3.20.20.120 108 350 3.6E-121 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_PC00112 ed399bf067497e2381a7d0e2e749a574 386 SUPERFAMILY SSF51604 101 365 1.05E-62 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_PD00182 ece38cd9fcf541454e6d8708bccde779 131 SMART SM00448 13 120 0.0032 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00182 ece38cd9fcf541454e6d8708bccde779 131 SUPERFAMILY SSF52172 11 124 1.57E-14 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PD00182 ece38cd9fcf541454e6d8708bccde779 131 Pfam PF00072 Response regulator receiver domain 15 93 2.1E-6 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PD00182 ece38cd9fcf541454e6d8708bccde779 131 Gene3D G3DSA:3.40.50.2300 11 128 9.0E-31 T 12-10-2018 AMJ96_CH00411 efe1042eb4581d03fb3076b75858bbb3 167 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 104 119 3.7E-16 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMJ96_CH00411 efe1042eb4581d03fb3076b75858bbb3 167 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 140 156 3.7E-16 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMJ96_CH00411 efe1042eb4581d03fb3076b75858bbb3 167 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 59 67 3.7E-16 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMJ96_CH00411 efe1042eb4581d03fb3076b75858bbb3 167 TIGRFAM TIGR00077 lspA: signal peptidase II 18 164 1.2E-37 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMJ96_CH00411 efe1042eb4581d03fb3076b75858bbb3 167 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 13 165 15.433 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMJ96_CH00411 efe1042eb4581d03fb3076b75858bbb3 167 ProSitePatterns PS00855 Signal peptidases II signature. 107 119 - T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMJ96_CH00411 efe1042eb4581d03fb3076b75858bbb3 167 Pfam PF01252 Signal peptidase (SPase) II 22 158 1.2E-33 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 AMJ96_CH01110 f266131d5ee15bbac6c06f990d9ec34e 267 SUPERFAMILY SSF110710 5 266 2.04E-75 T 12-10-2018 IPR028345 Aminoglycoside 3-N-acetyltransferase-like AMJ96_CH01110 f266131d5ee15bbac6c06f990d9ec34e 267 Pfam PF02522 Aminoglycoside 3-N-acetyltransferase 28 264 4.8E-61 T 12-10-2018 IPR003679 Aminoglycoside N(3)-acetyltransferase GO:0046353|GO:0046677 AMJ96_PC00041 180332ef38ed1d4f1c52ef814ff06d77 332 SUPERFAMILY SSF161098 97 308 4.58E-13 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00041 180332ef38ed1d4f1c52ef814ff06d77 332 Gene3D G3DSA:1.10.3720.10 84 326 2.8E-15 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00041 180332ef38ed1d4f1c52ef814ff06d77 332 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 120 325 1.4E-23 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PB00021 c3791601ac39b362438f14eb054438c2 507 SUPERFAMILY SSF53098 8 507 5.56E-57 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_PB00021 c3791601ac39b362438f14eb054438c2 507 Gene3D G3DSA:3.30.420.10 278 501 4.2E-32 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_CH01575 b4d3c10110f76d8acf475775dec946a6 348 PRINTS PR00735 Glycosyl hydrolase family 8 signature 57 70 2.2E-22 T 12-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMJ96_CH01575 b4d3c10110f76d8acf475775dec946a6 348 PRINTS PR00735 Glycosyl hydrolase family 8 signature 115 133 2.2E-22 T 12-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMJ96_CH01575 b4d3c10110f76d8acf475775dec946a6 348 PRINTS PR00735 Glycosyl hydrolase family 8 signature 245 254 2.2E-22 T 12-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMJ96_CH01575 b4d3c10110f76d8acf475775dec946a6 348 PRINTS PR00735 Glycosyl hydrolase family 8 signature 222 233 2.2E-22 T 12-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMJ96_CH01575 b4d3c10110f76d8acf475775dec946a6 348 PRINTS PR00735 Glycosyl hydrolase family 8 signature 327 341 2.2E-22 T 12-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMJ96_CH01575 b4d3c10110f76d8acf475775dec946a6 348 PRINTS PR00735 Glycosyl hydrolase family 8 signature 182 199 2.2E-22 T 12-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMJ96_CH01575 b4d3c10110f76d8acf475775dec946a6 348 Pfam PF01270 Glycosyl hydrolases family 8 4 339 1.3E-60 T 12-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 AMJ96_CH01575 b4d3c10110f76d8acf475775dec946a6 348 SUPERFAMILY SSF48208 5 346 5.95E-85 T 12-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 AMJ96_CH01575 b4d3c10110f76d8acf475775dec946a6 348 Gene3D G3DSA:1.50.10.10 17 343 1.1E-93 T 12-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 AMJ96_CH02367 d873d362556785ed9feb9a6bd2b023bf 401 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 6 386 7.7E-76 T 12-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 AMJ96_CH02367 d873d362556785ed9feb9a6bd2b023bf 401 Pfam PF07690 Major Facilitator Superfamily 11 355 1.3E-35 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH02367 d873d362556785ed9feb9a6bd2b023bf 401 Gene3D G3DSA:1.20.1720.10 6 388 4.2E-87 T 12-10-2018 AMJ96_CH02367 d873d362556785ed9feb9a6bd2b023bf 401 SUPERFAMILY SSF103473 6 386 1.24E-52 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_PB00289 ab45e8ef3e408d99e91ae2857e0f1685 297 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 5 276 2.2E-133 T 12-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 AMJ96_PB00289 ab45e8ef3e408d99e91ae2857e0f1685 297 Hamap MF_00533 Nitrogenase iron protein [nifH]. 4 277 53.161 T 12-10-2018 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 AMJ96_PB00289 ab45e8ef3e408d99e91ae2857e0f1685 297 ProSitePatterns PS00746 NifH/frxC family signature 1. 89 101 - T 12-10-2018 IPR030655 NifH/chlL conserved site AMJ96_PB00289 ab45e8ef3e408d99e91ae2857e0f1685 297 PIRSF PIRSF000363 3 279 1.6E-119 T 12-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 AMJ96_PB00289 ab45e8ef3e408d99e91ae2857e0f1685 297 PRINTS PR00091 Nitrogenase component II signature 10 23 9.6E-38 T 12-10-2018 AMJ96_PB00289 ab45e8ef3e408d99e91ae2857e0f1685 297 PRINTS PR00091 Nitrogenase component II signature 87 101 9.6E-38 T 12-10-2018 AMJ96_PB00289 ab45e8ef3e408d99e91ae2857e0f1685 297 PRINTS PR00091 Nitrogenase component II signature 125 140 9.6E-38 T 12-10-2018 AMJ96_PB00289 ab45e8ef3e408d99e91ae2857e0f1685 297 PRINTS PR00091 Nitrogenase component II signature 32 47 9.6E-38 T 12-10-2018 AMJ96_PB00289 ab45e8ef3e408d99e91ae2857e0f1685 297 TIGRFAM TIGR01287 nifH: nitrogenase iron protein 5 279 6.5E-136 T 12-10-2018 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 AMJ96_PB00289 ab45e8ef3e408d99e91ae2857e0f1685 297 Gene3D G3DSA:3.40.50.300 3 278 3.3E-66 T 12-10-2018 AMJ96_PB00289 ab45e8ef3e408d99e91ae2857e0f1685 297 ProSitePatterns PS00692 NifH/frxC family signature 2. 126 139 - T 12-10-2018 IPR030655 NifH/chlL conserved site AMJ96_PB00289 ab45e8ef3e408d99e91ae2857e0f1685 297 SUPERFAMILY SSF52540 5 282 5.91E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PB00391 ab45e8ef3e408d99e91ae2857e0f1685 297 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 5 276 2.2E-133 T 12-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 AMJ96_PB00391 ab45e8ef3e408d99e91ae2857e0f1685 297 Hamap MF_00533 Nitrogenase iron protein [nifH]. 4 277 53.161 T 12-10-2018 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 AMJ96_PB00391 ab45e8ef3e408d99e91ae2857e0f1685 297 ProSitePatterns PS00746 NifH/frxC family signature 1. 89 101 - T 12-10-2018 IPR030655 NifH/chlL conserved site AMJ96_PB00391 ab45e8ef3e408d99e91ae2857e0f1685 297 PIRSF PIRSF000363 3 279 1.6E-119 T 12-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 AMJ96_PB00391 ab45e8ef3e408d99e91ae2857e0f1685 297 PRINTS PR00091 Nitrogenase component II signature 10 23 9.6E-38 T 12-10-2018 AMJ96_PB00391 ab45e8ef3e408d99e91ae2857e0f1685 297 PRINTS PR00091 Nitrogenase component II signature 87 101 9.6E-38 T 12-10-2018 AMJ96_PB00391 ab45e8ef3e408d99e91ae2857e0f1685 297 PRINTS PR00091 Nitrogenase component II signature 125 140 9.6E-38 T 12-10-2018 AMJ96_PB00391 ab45e8ef3e408d99e91ae2857e0f1685 297 PRINTS PR00091 Nitrogenase component II signature 32 47 9.6E-38 T 12-10-2018 AMJ96_PB00391 ab45e8ef3e408d99e91ae2857e0f1685 297 TIGRFAM TIGR01287 nifH: nitrogenase iron protein 5 279 6.5E-136 T 12-10-2018 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 AMJ96_PB00391 ab45e8ef3e408d99e91ae2857e0f1685 297 Gene3D G3DSA:3.40.50.300 3 278 3.3E-66 T 12-10-2018 AMJ96_PB00391 ab45e8ef3e408d99e91ae2857e0f1685 297 ProSitePatterns PS00692 NifH/frxC family signature 2. 126 139 - T 12-10-2018 IPR030655 NifH/chlL conserved site AMJ96_PB00391 ab45e8ef3e408d99e91ae2857e0f1685 297 SUPERFAMILY SSF52540 5 282 5.91E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00232 5133bf01bd86f7dd4bd0695923aedc01 235 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 45 216 1.1E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00232 5133bf01bd86f7dd4bd0695923aedc01 235 Gene3D G3DSA:1.10.3720.10 3 219 8.9E-40 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00232 5133bf01bd86f7dd4bd0695923aedc01 235 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 7 109 1.1E-21 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_PC00232 5133bf01bd86f7dd4bd0695923aedc01 235 SUPERFAMILY SSF161098 8 205 4.84E-32 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00449 b04fdfff7d1f839f234360751d5aefd4 239 Pfam PF10099 Anti-sigma-K factor rskA 67 234 1.7E-22 T 12-10-2018 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 AMJ96_PC00008 ebae24405030ddd59bbd35e65380f95f 869 Pfam PF00128 Alpha amylase, catalytic domain 25 99 3.7E-16 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_PC00008 ebae24405030ddd59bbd35e65380f95f 869 TIGRFAM TIGR02401 trehalose_TreY: malto-oligosyltrehalose synthase 4 865 2.2E-283 T 12-10-2018 IPR012767 Maltooligosyl trehalose synthase KEGG: 00500+5.4.99.15|MetaCyc: PWY-2661 AMJ96_PC00008 ebae24405030ddd59bbd35e65380f95f 869 SUPERFAMILY SSF51445 4 768 2.71E-119 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_PC00008 ebae24405030ddd59bbd35e65380f95f 869 Gene3D G3DSA:3.20.20.80 243 384 4.2E-32 T 12-10-2018 AMJ96_PC00008 ebae24405030ddd59bbd35e65380f95f 869 Gene3D G3DSA:3.20.20.80 663 772 2.1E-29 T 12-10-2018 AMJ96_PC00008 ebae24405030ddd59bbd35e65380f95f 869 Gene3D G3DSA:3.30.1590.10 95 200 8.6E-21 T 12-10-2018 AMJ96_PC00008 ebae24405030ddd59bbd35e65380f95f 869 SMART SM00642 12 461 6.6E-7 T 12-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AMJ96_PC00008 ebae24405030ddd59bbd35e65380f95f 869 Gene3D G3DSA:3.20.20.80 5 94 4.7E-13 T 12-10-2018 AMJ96_CH02177 8b70b31aa49f249367bde428a1cec26e 360 SUPERFAMILY SSF111337 1 356 7.19E-128 T 12-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AMJ96_CH02177 8b70b31aa49f249367bde428a1cec26e 360 Pfam PF02547 Queuosine biosynthesis protein 4 356 2.3E-125 T 12-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AMJ96_CH02177 8b70b31aa49f249367bde428a1cec26e 360 Gene3D G3DSA:2.40.10.240 65 178 6.4E-111 T 12-10-2018 AMJ96_CH02177 8b70b31aa49f249367bde428a1cec26e 360 Gene3D G3DSA:3.40.1780.10 15 355 6.4E-111 T 12-10-2018 AMJ96_CH02177 8b70b31aa49f249367bde428a1cec26e 360 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 357 43.498 T 12-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AMJ96_CH02177 8b70b31aa49f249367bde428a1cec26e 360 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 356 7.0E-113 T 12-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AMJ96_CH02337 3700142df87378a9d56e9fc7252be1c3 267 Pfam PF09955 Predicted integral membrane protein (DUF2189) 72 198 2.0E-39 T 12-10-2018 IPR018692 Predicted integral membrane protein DUF2189 AMJ96_CH02996 9db6534a023fb7655bfd78c3d341caa7 200 Pfam PF02630 SCO1/SenC 35 177 1.9E-38 T 12-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02996 9db6534a023fb7655bfd78c3d341caa7 200 SUPERFAMILY SSF52833 39 197 4.57E-46 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH02996 9db6534a023fb7655bfd78c3d341caa7 200 Gene3D G3DSA:3.40.30.10 25 199 2.7E-48 T 12-10-2018 AMJ96_CH01183 92c7e3f8da519482db92d57f940dbe23 403 Pfam PF07690 Major Facilitator Superfamily 22 358 5.5E-17 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH01183 92c7e3f8da519482db92d57f940dbe23 403 SUPERFAMILY SSF103473 156 393 1.44E-15 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH01183 92c7e3f8da519482db92d57f940dbe23 403 Gene3D G3DSA:1.20.1250.20 211 401 1.4E-11 T 12-10-2018 AMJ96_CH01183 92c7e3f8da519482db92d57f940dbe23 403 SUPERFAMILY SSF103473 3 194 4.19E-14 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH01183 92c7e3f8da519482db92d57f940dbe23 403 Gene3D G3DSA:1.20.1250.20 7 198 4.3E-13 T 12-10-2018 AMJ96_CH03293 c727f7e76461470952c7e1ee2e504fbd 246 SUPERFAMILY SSF56300 1 243 8.55E-49 T 12-10-2018 AMJ96_CH03293 c727f7e76461470952c7e1ee2e504fbd 246 Gene3D G3DSA:3.60.21.10 1 244 3.4E-52 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like AMJ96_CH03293 c727f7e76461470952c7e1ee2e504fbd 246 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 204 8.7E-24 T 12-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 AMJ96_CH03293 c727f7e76461470952c7e1ee2e504fbd 246 PIRSF PIRSF000883 1 246 4.1E-57 T 12-10-2018 IPR011152 Phosphoesterase MJ0912 AMJ96_CH01231 699443c52989849bdf32d95cd2c83232 153 SUPERFAMILY SSF51182 23 120 3.91E-19 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH01231 699443c52989849bdf32d95cd2c83232 153 Gene3D G3DSA:2.60.120.10 4 152 5.2E-23 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH01231 699443c52989849bdf32d95cd2c83232 153 Pfam PF07883 Cupin domain 40 109 3.9E-13 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_CH03768 8b68b873944de93ab73bea0b3796d842 109 Pfam PF13466 STAS domain 11 90 1.4E-8 T 12-10-2018 IPR002645 STAS domain AMJ96_CH03768 8b68b873944de93ab73bea0b3796d842 109 Gene3D G3DSA:3.30.750.24 4 104 1.2E-5 T 12-10-2018 IPR036513 STAS domain superfamily AMJ96_PD00053 77941c363daf9e7945e2204a31475bc9 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 287 7.6E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00053 77941c363daf9e7945e2204a31475bc9 297 SUPERFAMILY SSF161098 21 297 2.06E-55 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00053 77941c363daf9e7945e2204a31475bc9 297 Gene3D G3DSA:1.10.3720.10 16 284 2.7E-52 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02199 2a2888d4fe252078c94ae86413a8c2e0 241 SUPERFAMILY SSF161098 22 228 8.11E-35 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02199 2a2888d4fe252078c94ae86413a8c2e0 241 Gene3D G3DSA:1.10.3720.10 16 235 2.4E-42 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02199 2a2888d4fe252078c94ae86413a8c2e0 241 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 43 233 1.9E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02199 2a2888d4fe252078c94ae86413a8c2e0 241 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 21 128 4.8E-18 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_CH00174 7fae97644cdaf06de71fc359355585fd 158 Pfam PF06754 Phosphonate metabolism protein PhnG 16 156 1.3E-51 T 12-10-2018 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_CH00174 7fae97644cdaf06de71fc359355585fd 158 TIGRFAM TIGR03293 PhnG_redo: phosphonate C-P lyase system protein PhnG 16 157 2.0E-48 T 12-10-2018 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_PA00192 f8a069e2744eb6c936bb5d1cf5bea143 526 Gene3D G3DSA:3.40.190.10 205 505 2.3E-92 T 12-10-2018 AMJ96_PA00192 f8a069e2744eb6c936bb5d1cf5bea143 526 SUPERFAMILY SSF53850 43 508 4.48E-111 T 12-10-2018 AMJ96_PA00192 f8a069e2744eb6c936bb5d1cf5bea143 526 Gene3D G3DSA:3.90.76.10 63 204 2.3E-92 T 12-10-2018 AMJ96_PA00192 f8a069e2744eb6c936bb5d1cf5bea143 526 Gene3D G3DSA:3.10.105.10 280 495 2.3E-92 T 12-10-2018 AMJ96_PA00192 f8a069e2744eb6c936bb5d1cf5bea143 526 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 97 444 2.8E-69 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_PA00192 f8a069e2744eb6c936bb5d1cf5bea143 526 PIRSF PIRSF002741 16 518 4.3E-69 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_CH01652 abe55e03694526b6814429f6e028b48e 134 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 118 2.6E-20 T 12-10-2018 AMJ96_CH01652 abe55e03694526b6814429f6e028b48e 134 SUPERFAMILY SSF54593 1 133 3.99E-33 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01652 abe55e03694526b6814429f6e028b48e 134 Gene3D G3DSA:3.10.180.10 1 134 4.0E-37 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01652 abe55e03694526b6814429f6e028b48e 134 TIGRFAM TIGR03081 metmalonyl_epim: methylmalonyl-CoA epimerase 4 133 2.4E-49 T 12-10-2018 IPR017515 Methylmalonyl-CoA epimerase KEGG: 00280+5.1.99.1|KEGG: 00630+5.1.99.1|KEGG: 00640+5.1.99.1|KEGG: 00720+5.1.99.1|MetaCyc: PWY-5741|MetaCyc: PWY-5743|MetaCyc: PWY-5789|MetaCyc: PWY-6728|MetaCyc: PWY-7384|MetaCyc: PWY-7854|Reactome: R-HSA-71032 AMJ96_CH01934 739b103c6fa9f258dd859f7481fc4737 385 Pfam PF00155 Aminotransferase class I and II 32 380 3.9E-54 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_CH01934 739b103c6fa9f258dd859f7481fc4737 385 SUPERFAMILY SSF53383 7 384 1.02E-94 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH01934 739b103c6fa9f258dd859f7481fc4737 385 Gene3D G3DSA:3.40.640.10 2 385 1.8E-120 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH01934 739b103c6fa9f258dd859f7481fc4737 385 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 164 188 5.6E-12 T 12-10-2018 AMJ96_CH01934 739b103c6fa9f258dd859f7481fc4737 385 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 92 112 5.6E-12 T 12-10-2018 AMJ96_CH01934 739b103c6fa9f258dd859f7481fc4737 385 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 114 135 5.6E-12 T 12-10-2018 AMJ96_CH01934 739b103c6fa9f258dd859f7481fc4737 385 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 200 223 5.6E-12 T 12-10-2018 AMJ96_CH01506 383b25ce6232f1676502a73d3681cd0c 257 Gene3D G3DSA:1.20.144.10 167 257 4.8E-10 T 12-10-2018 AMJ96_CH01506 383b25ce6232f1676502a73d3681cd0c 257 SMART SM00014 122 243 0.0076 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMJ96_CH01506 383b25ce6232f1676502a73d3681cd0c 257 Pfam PF01569 PAP2 superfamily 122 245 1.8E-16 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AMJ96_CH01506 383b25ce6232f1676502a73d3681cd0c 257 SUPERFAMILY SSF48317 28 247 9.97E-13 T 12-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily AMJ96_CH03127 6c9496ea7bac066bc80470e5feff14fb 330 SUPERFAMILY SSF51430 1 308 9.95E-89 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH03127 6c9496ea7bac066bc80470e5feff14fb 330 Gene3D G3DSA:3.20.20.100 1 329 2.5E-104 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH03127 6c9496ea7bac066bc80470e5feff14fb 330 Pfam PF00248 Aldo/keto reductase family 16 306 3.4E-63 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_PA00299 54617764216670537f1082debe1a308d 355 Gene3D G3DSA:3.40.50.2300 139 332 2.0E-81 T 12-10-2018 AMJ96_PA00299 54617764216670537f1082debe1a308d 355 SUPERFAMILY SSF53822 32 326 8.95E-60 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PA00299 54617764216670537f1082debe1a308d 355 Gene3D G3DSA:3.40.50.2300 35 314 2.0E-81 T 12-10-2018 AMJ96_PA00299 54617764216670537f1082debe1a308d 355 Pfam PF13407 Periplasmic binding protein domain 35 298 4.0E-61 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_CH03808 56c9d56ac898398bd923de0ee3729fa7 402 Pfam PF04311 Protein of unknown function (DUF459) 72 347 9.4E-56 T 12-10-2018 IPR007407 Protein of unknown function DUF459 AMJ96_CH03808 56c9d56ac898398bd923de0ee3729fa7 402 SUPERFAMILY SSF52266 84 302 1.32E-18 T 12-10-2018 AMJ96_CH03808 56c9d56ac898398bd923de0ee3729fa7 402 Gene3D G3DSA:3.40.50.1110 90 302 4.0E-19 T 12-10-2018 IPR036514 SGNH hydrolase superfamily AMJ96_CH00236 94324cf5add10a1039310e9568e37b87 412 Pfam PF00535 Glycosyl transferase family 2 7 150 2.6E-28 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_CH00236 94324cf5add10a1039310e9568e37b87 412 SUPERFAMILY SSF53448 5 179 6.49E-35 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00236 94324cf5add10a1039310e9568e37b87 412 Gene3D G3DSA:3.90.550.10 3 214 2.1E-32 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_PC00355 172c11f1fef7331c4660a6854689bcb7 508 Gene3D G3DSA:3.90.76.10 36 181 1.2E-91 T 12-10-2018 AMJ96_PC00355 172c11f1fef7331c4660a6854689bcb7 508 Gene3D G3DSA:3.40.190.10 182 492 1.2E-91 T 12-10-2018 AMJ96_PC00355 172c11f1fef7331c4660a6854689bcb7 508 SUPERFAMILY SSF53850 23 507 3.26E-102 T 12-10-2018 AMJ96_PC00355 172c11f1fef7331c4660a6854689bcb7 508 Gene3D G3DSA:3.10.105.10 270 483 1.2E-91 T 12-10-2018 AMJ96_PC00355 172c11f1fef7331c4660a6854689bcb7 508 PIRSF PIRSF002741 9 505 5.3E-73 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_PC00355 172c11f1fef7331c4660a6854689bcb7 508 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 70 431 2.6E-69 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_CH01978 3f1ff930f023a7b24ed470a57d49df45 205 Pfam PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein 11 194 3.2E-22 T 12-10-2018 IPR018770 5-bromo-4-chloroindolyl phosphate hydrolysis protein AMJ96_PA00172 69c6fd6dbc29701da9b06f3f5d5e2a23 418 Pfam PF02308 MgtC family 14 139 4.9E-11 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMJ96_PA00172 69c6fd6dbc29701da9b06f3f5d5e2a23 418 Pfam PF13194 Domain of unknown function (DUF4010) 187 392 2.8E-50 T 12-10-2018 IPR025105 Domain of unknown function DUF4010 AMJ96_CH04009 feadcbeb93606d05e405298b123388a2 268 Pfam PF00583 Acetyltransferase (GNAT) family 166 254 1.3E-13 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH04009 feadcbeb93606d05e405298b123388a2 268 Gene3D G3DSA:3.40.630.30 16 266 3.3E-27 T 12-10-2018 AMJ96_CH04009 feadcbeb93606d05e405298b123388a2 268 SUPERFAMILY SSF55729 83 262 1.53E-21 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH03257 a3199158f2b7f91df718016055f7af65 328 SMART SM00382 42 235 1.2E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03257 a3199158f2b7f91df718016055f7af65 328 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 235 323 2.5E-25 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_CH03257 a3199158f2b7f91df718016055f7af65 328 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 237 304 1.6E-18 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_CH03257 a3199158f2b7f91df718016055f7af65 328 Gene3D G3DSA:3.40.50.300 4 328 8.4E-100 T 12-10-2018 AMJ96_CH03257 a3199158f2b7f91df718016055f7af65 328 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03257 a3199158f2b7f91df718016055f7af65 328 SUPERFAMILY SSF52540 6 257 1.25E-72 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03257 a3199158f2b7f91df718016055f7af65 328 Pfam PF00005 ABC transporter 33 185 2.5E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02053 253126e7e17f691b70d9aebbe94c997c 170 PIRSF PIRSF030820 1 166 3.8E-56 T 12-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 AMJ96_CH02053 253126e7e17f691b70d9aebbe94c997c 170 Pfam PF06073 Bacterial protein of unknown function (DUF934) 51 155 5.9E-35 T 12-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 AMJ96_PD00307 ed2fbad0fccc44772740e9e8de34f0a5 374 Gene3D G3DSA:3.40.50.2300 53 151 8.4E-17 T 12-10-2018 AMJ96_PD00307 ed2fbad0fccc44772740e9e8de34f0a5 374 Gene3D G3DSA:3.40.50.2300 154 340 2.1E-19 T 12-10-2018 AMJ96_PD00307 ed2fbad0fccc44772740e9e8de34f0a5 374 SUPERFAMILY SSF53822 58 336 3.73E-42 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PD00307 ed2fbad0fccc44772740e9e8de34f0a5 374 Pfam PF13407 Periplasmic binding protein domain 60 316 5.8E-38 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_PD00106 22e3b96966d1c1069f9c3af10a57a2eb 442 Gene3D G3DSA:3.40.190.10 163 429 1.5E-83 T 12-10-2018 AMJ96_PD00106 22e3b96966d1c1069f9c3af10a57a2eb 442 Pfam PF01547 Bacterial extracellular solute-binding protein 56 347 1.0E-37 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PD00106 22e3b96966d1c1069f9c3af10a57a2eb 442 SUPERFAMILY SSF53850 50 433 3.0E-61 T 12-10-2018 AMJ96_PD00106 22e3b96966d1c1069f9c3af10a57a2eb 442 Gene3D G3DSA:3.40.190.10 56 391 1.5E-83 T 12-10-2018 AMJ96_CH03539 8e28a2a784a0a98657d3b9d2287cdbda 291 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 248 270 3.6E-9 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AMJ96_CH03539 8e28a2a784a0a98657d3b9d2287cdbda 291 Pfam PF00005 ABC transporter 30 198 9.2E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03539 8e28a2a784a0a98657d3b9d2287cdbda 291 SMART SM00382 38 248 1.5E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03539 8e28a2a784a0a98657d3b9d2287cdbda 291 SUPERFAMILY SSF52540 12 270 6.2E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03539 8e28a2a784a0a98657d3b9d2287cdbda 291 Gene3D G3DSA:3.40.50.300 11 285 1.0E-57 T 12-10-2018 AMJ96_CH00742 d74039a679dde34a80b6202357938c1d 362 Pfam PF00005 ABC transporter 19 161 1.9E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00742 d74039a679dde34a80b6202357938c1d 362 Gene3D G3DSA:3.40.50.300 1 239 1.9E-74 T 12-10-2018 AMJ96_CH00742 d74039a679dde34a80b6202357938c1d 362 SUPERFAMILY SSF52540 4 243 8.63E-84 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00742 d74039a679dde34a80b6202357938c1d 362 SUPERFAMILY SSF50331 237 359 8.26E-29 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH00742 d74039a679dde34a80b6202357938c1d 362 SMART SM00382 28 212 1.3E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00742 d74039a679dde34a80b6202357938c1d 362 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00742 d74039a679dde34a80b6202357938c1d 362 Pfam PF08402 TOBE domain 282 353 1.9E-7 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_CH00742 d74039a679dde34a80b6202357938c1d 362 Gene3D G3DSA:2.40.50.100 240 356 3.2E-33 T 12-10-2018 AMJ96_CH00742 d74039a679dde34a80b6202357938c1d 362 Gene3D G3DSA:2.40.50.140 298 344 3.2E-33 T 12-10-2018 AMJ96_PB00426 722b122474ef22911b6cb51383599528 257 PRINTS PR00783 Major intrinsic protein family signature 2 21 6.9E-41 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMJ96_PB00426 722b122474ef22911b6cb51383599528 257 PRINTS PR00783 Major intrinsic protein family signature 195 215 6.9E-41 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMJ96_PB00426 722b122474ef22911b6cb51383599528 257 PRINTS PR00783 Major intrinsic protein family signature 38 62 6.9E-41 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMJ96_PB00426 722b122474ef22911b6cb51383599528 257 PRINTS PR00783 Major intrinsic protein family signature 128 146 6.9E-41 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMJ96_PB00426 722b122474ef22911b6cb51383599528 257 PRINTS PR00783 Major intrinsic protein family signature 156 178 6.9E-41 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMJ96_PB00426 722b122474ef22911b6cb51383599528 257 PRINTS PR00783 Major intrinsic protein family signature 75 94 6.9E-41 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMJ96_PB00426 722b122474ef22911b6cb51383599528 257 Pfam PF00230 Major intrinsic protein 2 211 1.6E-42 T 12-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 AMJ96_PB00426 722b122474ef22911b6cb51383599528 257 SUPERFAMILY SSF81338 1 211 5.76E-54 T 12-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AMJ96_PB00426 722b122474ef22911b6cb51383599528 257 Gene3D G3DSA:1.20.1080.10 1 214 5.1E-60 T 12-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AMJ96_PB00426 722b122474ef22911b6cb51383599528 257 ProSitePatterns PS00221 MIP family signature. 56 64 - T 12-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 AMJ96_CH00639 611cd4ddeb458e46e246d057e4b1e6a9 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 6.0E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00639 611cd4ddeb458e46e246d057e4b1e6a9 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 6.0E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00639 611cd4ddeb458e46e246d057e4b1e6a9 197 Gene3D G3DSA:1.10.357.10 1 196 3.1E-53 T 12-10-2018 AMJ96_CH00639 611cd4ddeb458e46e246d057e4b1e6a9 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 7.9E-16 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00639 611cd4ddeb458e46e246d057e4b1e6a9 197 SUPERFAMILY SSF46689 3 84 9.23E-19 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00153 4efac4067e642cfdb2feeba1d863c322 354 SUPERFAMILY SSF142764 6 347 1.31E-65 T 12-10-2018 AMJ96_PD00153 4efac4067e642cfdb2feeba1d863c322 354 Gene3D G3DSA:3.40.980.20 253 352 7.9E-14 T 12-10-2018 AMJ96_PD00153 4efac4067e642cfdb2feeba1d863c322 354 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 263 344 1.3E-11 T 12-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain AMJ96_PD00153 4efac4067e642cfdb2feeba1d863c322 354 Gene3D G3DSA:3.40.50.10840 2 141 4.9E-31 T 12-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily AMJ96_PD00153 4efac4067e642cfdb2feeba1d863c322 354 Pfam PF07005 Putative sugar-binding N-terminal domain 6 131 9.9E-26 T 12-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain AMJ96_CH03197 fe123576adf38c4518d1c60d22cb9124 192 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 15 192 1.8E-72 T 12-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 AMJ96_CH03197 fe123576adf38c4518d1c60d22cb9124 192 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 7 46 8.0E-21 T 12-10-2018 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 AMJ96_CH03197 fe123576adf38c4518d1c60d22cb9124 192 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 15 39 2.8E-5 T 12-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMJ96_CH03197 fe123576adf38c4518d1c60d22cb9124 192 SUPERFAMILY SSF50022 36 187 3.03E-40 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMJ96_CH03197 fe123576adf38c4518d1c60d22cb9124 192 Gene3D G3DSA:2.102.10.10 47 192 2.7E-49 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMJ96_CH03197 fe123576adf38c4518d1c60d22cb9124 192 Gene3D G3DSA:1.20.5.510 7 46 2.7E-19 T 12-10-2018 AMJ96_CH03197 fe123576adf38c4518d1c60d22cb9124 192 Pfam PF00355 Rieske [2Fe-2S] domain 125 178 1.2E-12 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AMJ96_CH03197 fe123576adf38c4518d1c60d22cb9124 192 PRINTS PR00162 Rieske 2Fe-2S subunit signature 130 141 1.1E-15 T 12-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMJ96_CH03197 fe123576adf38c4518d1c60d22cb9124 192 PRINTS PR00162 Rieske 2Fe-2S subunit signature 152 164 1.1E-15 T 12-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMJ96_CH03197 fe123576adf38c4518d1c60d22cb9124 192 PRINTS PR00162 Rieske 2Fe-2S subunit signature 164 176 1.1E-15 T 12-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AMJ96_CH02855 eb58789873f68fa81e844ca4f79c5ad9 1239 Gene3D G3DSA:2.60.120.1440 61 202 1.4E-6 T 12-10-2018 AMJ96_CH02855 eb58789873f68fa81e844ca4f79c5ad9 1239 SMART SM00028 448 481 0.32 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02855 eb58789873f68fa81e844ca4f79c5ad9 1239 SMART SM00028 345 378 220.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02855 eb58789873f68fa81e844ca4f79c5ad9 1239 SMART SM00028 482 515 0.065 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02855 eb58789873f68fa81e844ca4f79c5ad9 1239 SMART SM00028 516 549 13.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02855 eb58789873f68fa81e844ca4f79c5ad9 1239 SMART SM00028 280 313 300.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02855 eb58789873f68fa81e844ca4f79c5ad9 1239 SUPERFAMILY SSF48452 445 613 1.9E-24 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02855 eb58789873f68fa81e844ca4f79c5ad9 1239 Pfam PF14559 Tetratricopeptide repeat 462 514 7.8E-7 T 12-10-2018 AMJ96_CH02855 eb58789873f68fa81e844ca4f79c5ad9 1239 SUPERFAMILY SSF48452 288 515 2.18E-15 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02855 eb58789873f68fa81e844ca4f79c5ad9 1239 Gene3D G3DSA:2.40.170.20 735 1239 3.4E-30 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily AMJ96_CH02855 eb58789873f68fa81e844ca4f79c5ad9 1239 Gene3D G3DSA:1.25.40.10 429 642 4.2E-25 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02855 eb58789873f68fa81e844ca4f79c5ad9 1239 Gene3D G3DSA:1.25.40.10 234 428 4.7E-9 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02855 eb58789873f68fa81e844ca4f79c5ad9 1239 Pfam PF04773 FecR protein 71 164 3.5E-16 T 12-10-2018 IPR006860 FecR protein AMJ96_CH02855 eb58789873f68fa81e844ca4f79c5ad9 1239 SUPERFAMILY SSF56935 721 1239 2.93E-32 T 12-10-2018 AMJ96_CH00569 fa9958144382383be790ec6569b13bc5 202 SUPERFAMILY SSF46689 3 79 6.8E-20 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH00569 fa9958144382383be790ec6569b13bc5 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 6.5E-17 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00569 fa9958144382383be790ec6569b13bc5 202 SUPERFAMILY SSF48498 78 183 2.45E-15 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH00569 fa9958144382383be790ec6569b13bc5 202 Gene3D G3DSA:1.10.357.10 1 191 1.2E-59 T 12-10-2018 AMJ96_CH00569 fa9958144382383be790ec6569b13bc5 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 4.9E-11 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00569 fa9958144382383be790ec6569b13bc5 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 4.9E-11 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH02935 a86d7df25fa9b63ee5633ddfdbdd17a6 375 Gene3D G3DSA:3.40.50.300 1 190 5.1E-32 T 12-10-2018 AMJ96_CH02935 a86d7df25fa9b63ee5633ddfdbdd17a6 375 SUPERFAMILY SSF52540 5 159 4.45E-20 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02935 a86d7df25fa9b63ee5633ddfdbdd17a6 375 Gene3D G3DSA:3.40.50.300 291 375 2.4E-16 T 12-10-2018 AMJ96_CH02935 a86d7df25fa9b63ee5633ddfdbdd17a6 375 Pfam PF13538 UvrD-like helicase C-terminal domain 326 374 5.0E-19 T 12-10-2018 IPR027785 UvrD-like helicase C-terminal domain AMJ96_CH02935 a86d7df25fa9b63ee5633ddfdbdd17a6 375 SUPERFAMILY SSF52540 134 374 6.59E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02935 a86d7df25fa9b63ee5633ddfdbdd17a6 375 Pfam PF13604 AAA domain 18 191 3.6E-25 T 12-10-2018 AMJ96_CH02914 23a6f280c926f21c5cb99baf56e1fe93 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 301 1.9E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02914 23a6f280c926f21c5cb99baf56e1fe93 306 SUPERFAMILY SSF161098 5 304 1.96E-52 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02914 23a6f280c926f21c5cb99baf56e1fe93 306 Gene3D G3DSA:1.10.3720.10 3 299 1.4E-47 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01661 770dd5f1660dc53273a5ea3fb4c87b59 195 Pfam PF00583 Acetyltransferase (GNAT) family 61 149 3.5E-4 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH01661 770dd5f1660dc53273a5ea3fb4c87b59 195 Gene3D G3DSA:3.40.630.30 34 183 9.3E-13 T 12-10-2018 AMJ96_CH01661 770dd5f1660dc53273a5ea3fb4c87b59 195 SUPERFAMILY SSF55729 4 185 2.3E-12 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH00476 80de5268668c34c711c7133b70df0669 144 Gene3D G3DSA:2.60.120.10 15 138 3.7E-15 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH00476 80de5268668c34c711c7133b70df0669 144 Pfam PF07883 Cupin domain 52 121 9.2E-10 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_CH00476 80de5268668c34c711c7133b70df0669 144 SUPERFAMILY SSF51182 27 143 3.34E-18 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH01277 4aa76943ce1daa5c7a407e49797f0f27 171 Pfam PF13420 Acetyltransferase (GNAT) domain 7 158 1.3E-28 T 12-10-2018 AMJ96_CH01277 4aa76943ce1daa5c7a407e49797f0f27 171 SUPERFAMILY SSF55729 2 167 7.89E-37 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH01277 4aa76943ce1daa5c7a407e49797f0f27 171 Gene3D G3DSA:3.40.630.30 2 170 6.8E-58 T 12-10-2018 AMJ96_CH00668 0c4431d02a13a473ad8504ff3c186c16 145 Gene3D G3DSA:3.40.50.2300 5 135 3.1E-11 T 12-10-2018 AMJ96_CH00668 0c4431d02a13a473ad8504ff3c186c16 145 SUPERFAMILY SSF52172 9 132 2.78E-12 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH00668 0c4431d02a13a473ad8504ff3c186c16 145 Pfam PF00072 Response regulator receiver domain 13 126 1.4E-6 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03719 cddc59d1be01b728a51ebcfda25dad57 204 Gene3D G3DSA:2.40.50.140 1 65 1.3E-19 T 12-10-2018 AMJ96_CH03719 cddc59d1be01b728a51ebcfda25dad57 204 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 195 3.1E-38 T 12-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 AMJ96_CH03719 cddc59d1be01b728a51ebcfda25dad57 204 Gene3D G3DSA:1.10.150.20 68 141 1.7E-20 T 12-10-2018 AMJ96_CH03719 cddc59d1be01b728a51ebcfda25dad57 204 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 203 28.9 T 12-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 AMJ96_CH03719 cddc59d1be01b728a51ebcfda25dad57 204 Pfam PF14520 Helix-hairpin-helix domain 72 129 1.6E-13 T 12-10-2018 AMJ96_CH03719 cddc59d1be01b728a51ebcfda25dad57 204 SUPERFAMILY SSF47781 65 134 5.19E-20 T 12-10-2018 IPR010994 RuvA domain 2-like AMJ96_CH03719 cddc59d1be01b728a51ebcfda25dad57 204 Pfam PF01330 RuvA N terminal domain 1 62 4.8E-18 T 12-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 AMJ96_CH03719 cddc59d1be01b728a51ebcfda25dad57 204 SUPERFAMILY SSF46929 157 203 1.57E-9 T 12-10-2018 IPR036267 RuvA, C-terminal domain superfamily AMJ96_CH03719 cddc59d1be01b728a51ebcfda25dad57 204 Gene3D G3DSA:1.10.8.10 151 202 7.4E-11 T 12-10-2018 AMJ96_CH03719 cddc59d1be01b728a51ebcfda25dad57 204 SUPERFAMILY SSF50249 1 63 1.2E-15 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold AMJ96_CH03719 cddc59d1be01b728a51ebcfda25dad57 204 Pfam PF07499 RuvA, C-terminal domain 157 202 1.9E-11 T 12-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 AMJ96_CH03425 7a403231afd21bdb7a1809c680778845 673 SUPERFAMILY SSF52266 490 642 1.15E-5 T 12-10-2018 AMJ96_CH03425 7a403231afd21bdb7a1809c680778845 673 Pfam PF01757 Acyltransferase family 11 310 6.5E-18 T 12-10-2018 IPR002656 Acyltransferase 3 GO:0016747 AMJ96_PA00225 9f49c69b4650643658043616d22749b6 256 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PA00225 9f49c69b4650643658043616d22749b6 256 Pfam PF00005 ABC transporter 31 170 1.6E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00225 9f49c69b4650643658043616d22749b6 256 SMART SM00382 40 220 6.9E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00225 9f49c69b4650643658043616d22749b6 256 SUPERFAMILY SSF52540 12 246 4.9E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00225 9f49c69b4650643658043616d22749b6 256 Gene3D G3DSA:3.40.50.300 12 233 3.3E-65 T 12-10-2018 AMJ96_CH00092 84a688d244af8114c506fbdaa03a5cbd 471 Gene3D G3DSA:3.20.20.140 31 444 3.6E-121 T 12-10-2018 AMJ96_CH00092 84a688d244af8114c506fbdaa03a5cbd 471 SUPERFAMILY SSF51556 6 470 6.35E-146 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_CH00092 84a688d244af8114c506fbdaa03a5cbd 471 Pfam PF02614 Glucuronate isomerase 21 467 1.6E-68 T 12-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 AMJ96_CH00092 84a688d244af8114c506fbdaa03a5cbd 471 Gene3D G3DSA:1.10.2020.10 53 152 3.6E-121 T 12-10-2018 AMJ96_CH03509 63578a82c8c976b03877cf17e1bd9636 261 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03509 63578a82c8c976b03877cf17e1bd9636 261 Gene3D G3DSA:3.40.50.300 4 239 7.2E-60 T 12-10-2018 AMJ96_CH03509 63578a82c8c976b03877cf17e1bd9636 261 Pfam PF00005 ABC transporter 26 167 1.4E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03509 63578a82c8c976b03877cf17e1bd9636 261 SMART SM00382 35 218 3.4E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03509 63578a82c8c976b03877cf17e1bd9636 261 SUPERFAMILY SSF52540 7 232 6.72E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00016 000a5e6a172e95d1f662a9b0aea7784e 505 Pfam PF13193 AMP-binding enzyme C-terminal domain 411 483 9.5E-16 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMJ96_PD00016 000a5e6a172e95d1f662a9b0aea7784e 505 Pfam PF00501 AMP-binding enzyme 9 402 2.7E-41 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMJ96_PD00016 000a5e6a172e95d1f662a9b0aea7784e 505 Gene3D G3DSA:3.30.300.30 398 496 3.2E-25 T 12-10-2018 AMJ96_PD00016 000a5e6a172e95d1f662a9b0aea7784e 505 Gene3D G3DSA:3.40.50.12780 1 395 3.4E-51 T 12-10-2018 AMJ96_PD00016 000a5e6a172e95d1f662a9b0aea7784e 505 SUPERFAMILY SSF56801 3 492 3.01E-87 T 12-10-2018 AMJ96_CH03585 f2a6cafd2987b9393c4e5a4d6a32020e 304 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 299 3.1E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03585 f2a6cafd2987b9393c4e5a4d6a32020e 304 SUPERFAMILY SSF161098 4 300 5.49E-49 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03585 f2a6cafd2987b9393c4e5a4d6a32020e 304 Gene3D G3DSA:1.10.3720.10 2 297 7.0E-42 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH04032 c75dccd19ff4b661cae599e90061896c 192 Gene3D G3DSA:1.20.1200.10 16 191 2.1E-57 T 12-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AMJ96_CH04032 c75dccd19ff4b661cae599e90061896c 192 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 8 186 5.0E-60 T 12-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AMJ96_CH04032 c75dccd19ff4b661cae599e90061896c 192 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 27 186 1.0E-56 T 12-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AMJ96_CH04032 c75dccd19ff4b661cae599e90061896c 192 SUPERFAMILY SSF89028 6 187 6.87E-63 T 12-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AMJ96_CH04032 c75dccd19ff4b661cae599e90061896c 192 Pfam PF01923 Cobalamin adenosyltransferase 7 175 7.1E-61 T 12-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 AMJ96_CH03371 0e8caa0fc90255232d4de9d176bd4350 141 Pfam PF07784 Protein of unknown function (DUF1622) 36 114 9.0E-28 T 12-10-2018 IPR012427 Protein of unknown function DUF1622 AMJ96_CH02193 3de7f3c53092f858c35dd58536cf78bc 226 Gene3D G3DSA:3.40.630.30 1 226 1.2E-65 T 12-10-2018 AMJ96_CH02193 3de7f3c53092f858c35dd58536cf78bc 226 SUPERFAMILY SSF55729 97 216 2.44E-21 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH02193 3de7f3c53092f858c35dd58536cf78bc 226 Pfam PF08445 FR47-like protein 135 215 2.4E-15 T 12-10-2018 IPR013653 FR47-like GO:0016747 AMJ96_PD00290 ce4d107f4a30c4fcf6b18afdb54aae49 459 Gene3D G3DSA:3.40.640.10 68 347 4.3E-153 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_PD00290 ce4d107f4a30c4fcf6b18afdb54aae49 459 SUPERFAMILY SSF53383 5 455 5.14E-112 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_PD00290 ce4d107f4a30c4fcf6b18afdb54aae49 459 PIRSF PIRSF000521 35 455 4.9E-33 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_PD00290 ce4d107f4a30c4fcf6b18afdb54aae49 459 Pfam PF00202 Aminotransferase class-III 30 452 1.1E-80 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_PD00290 ce4d107f4a30c4fcf6b18afdb54aae49 459 Gene3D G3DSA:3.90.1150.10 12 452 4.3E-153 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_PD00290 ce4d107f4a30c4fcf6b18afdb54aae49 459 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 257 294 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH02411 10ba5d745c7233cc9c47bcbf393660f0 281 SUPERFAMILY SSF52540 19 248 1.04E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02411 10ba5d745c7233cc9c47bcbf393660f0 281 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02411 10ba5d745c7233cc9c47bcbf393660f0 281 Gene3D G3DSA:3.40.50.300 18 275 4.0E-65 T 12-10-2018 AMJ96_CH02411 10ba5d745c7233cc9c47bcbf393660f0 281 SMART SM00382 45 234 3.7E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02411 10ba5d745c7233cc9c47bcbf393660f0 281 Pfam PF00005 ABC transporter 36 186 2.2E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03247 c79d08417cf9bb8a6db6317510b50b67 441 Gene3D G3DSA:3.40.640.10 63 343 1.1E-151 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH03247 c79d08417cf9bb8a6db6317510b50b67 441 SUPERFAMILY SSF53383 14 438 3.43E-124 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH03247 c79d08417cf9bb8a6db6317510b50b67 441 Gene3D G3DSA:3.90.1150.10 26 431 1.1E-151 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH03247 c79d08417cf9bb8a6db6317510b50b67 441 Pfam PF00202 Aminotransferase class-III 33 437 5.3E-99 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH03247 c79d08417cf9bb8a6db6317510b50b67 441 PIRSF PIRSF000521 34 440 3.7E-30 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH03247 c79d08417cf9bb8a6db6317510b50b67 441 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 251 288 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH00087 ee93d3bd50a1bc489a50c96fd0ee9d1f 357 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 121 1.2E-22 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_CH00087 ee93d3bd50a1bc489a50c96fd0ee9d1f 357 SUPERFAMILY SSF51735 5 156 2.25E-42 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00087 ee93d3bd50a1bc489a50c96fd0ee9d1f 357 SUPERFAMILY SSF55347 131 284 2.18E-23 T 12-10-2018 AMJ96_CH00087 ee93d3bd50a1bc489a50c96fd0ee9d1f 357 Gene3D G3DSA:3.40.50.720 7 314 1.0E-80 T 12-10-2018 AMJ96_CH00087 ee93d3bd50a1bc489a50c96fd0ee9d1f 357 Gene3D G3DSA:3.30.360.10 129 336 1.0E-80 T 12-10-2018 AMJ96_CH00087 ee93d3bd50a1bc489a50c96fd0ee9d1f 357 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 136 235 3.6E-8 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AMJ96_PA00190 554d10eb29bbab060b4ef7a29ad72355 543 Gene3D G3DSA:3.40.50.300 276 539 1.2E-77 T 12-10-2018 AMJ96_PA00190 554d10eb29bbab060b4ef7a29ad72355 543 Gene3D G3DSA:3.40.50.300 2 275 5.7E-68 T 12-10-2018 AMJ96_PA00190 554d10eb29bbab060b4ef7a29ad72355 543 Pfam PF00005 ABC transporter 30 187 2.7E-19 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00190 554d10eb29bbab060b4ef7a29ad72355 543 SMART SM00382 303 495 8.8E-19 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00190 554d10eb29bbab060b4ef7a29ad72355 543 SMART SM00382 38 237 3.4E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00190 554d10eb29bbab060b4ef7a29ad72355 543 ProSitePatterns PS00211 ABC transporters family signature. 418 432 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PA00190 554d10eb29bbab060b4ef7a29ad72355 543 SUPERFAMILY SSF52540 277 515 4.37E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00190 554d10eb29bbab060b4ef7a29ad72355 543 Pfam PF00005 ABC transporter 294 446 1.4E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00190 554d10eb29bbab060b4ef7a29ad72355 543 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 239 271 0.022 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PA00190 554d10eb29bbab060b4ef7a29ad72355 543 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 500 529 0.28 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PA00190 554d10eb29bbab060b4ef7a29ad72355 543 SUPERFAMILY SSF52540 20 259 1.41E-50 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02460 fda0a605e4456e3ce08f23c8f612921b 269 Gene3D G3DSA:3.40.50.970 3 268 8.0E-91 T 12-10-2018 AMJ96_CH02460 fda0a605e4456e3ce08f23c8f612921b 269 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 8 249 1.6E-45 T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AMJ96_CH02460 fda0a605e4456e3ce08f23c8f612921b 269 SUPERFAMILY SSF52518 3 265 3.85E-77 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold AMJ96_PC00064 e990c5075f4b29833319a9d5ecf9e719 124 SUPERFAMILY SSF51316 2 121 1.04E-33 T 12-10-2018 IPR011057 Mss4-like superfamily AMJ96_PC00064 e990c5075f4b29833319a9d5ecf9e719 124 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 26 104 1.5E-14 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMJ96_PC00064 e990c5075f4b29833319a9d5ecf9e719 124 Gene3D G3DSA:3.90.1590.10 2 88 3.7E-10 T 12-10-2018 AMJ96_PD00691 00b9679dbcc2c5f8741b3025d0916387 432 Gene3D G3DSA:3.40.190.10 162 421 3.0E-66 T 12-10-2018 AMJ96_PD00691 00b9679dbcc2c5f8741b3025d0916387 432 Gene3D G3DSA:3.40.190.10 62 388 3.0E-66 T 12-10-2018 AMJ96_PD00691 00b9679dbcc2c5f8741b3025d0916387 432 Pfam PF13416 Bacterial extracellular solute-binding protein 64 333 2.1E-22 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PD00691 00b9679dbcc2c5f8741b3025d0916387 432 SUPERFAMILY SSF53850 54 421 1.48E-53 T 12-10-2018 AMJ96_CH04339 80221f38ab463ea0754a42de0de5b8fe 472 Pfam PF00817 impB/mucB/samB family 3 93 5.8E-6 T 12-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AMJ96_CH04339 80221f38ab463ea0754a42de0de5b8fe 472 SUPERFAMILY SSF56672 3 191 6.23E-38 T 12-10-2018 AMJ96_CH04339 80221f38ab463ea0754a42de0de5b8fe 472 Gene3D G3DSA:2.30.40.20 8 35 4.2E-10 T 12-10-2018 AMJ96_CH04339 80221f38ab463ea0754a42de0de5b8fe 472 Gene3D G3DSA:1.10.150.20 133 184 4.2E-10 T 12-10-2018 AMJ96_CH04339 80221f38ab463ea0754a42de0de5b8fe 472 Gene3D G3DSA:3.30.70.270 36 191 4.2E-10 T 12-10-2018 AMJ96_CH03695 30eb8303cc094c30a55e6dfd2f5d3522 279 Gene3D G3DSA:2.40.160.20 40 256 1.2E-33 T 12-10-2018 AMJ96_CH03695 30eb8303cc094c30a55e6dfd2f5d3522 279 SUPERFAMILY SSF56925 40 256 8.37E-31 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMJ96_CH03695 30eb8303cc094c30a55e6dfd2f5d3522 279 Pfam PF13505 Outer membrane protein beta-barrel domain 39 256 2.4E-15 T 12-10-2018 IPR027385 Outer membrane protein beta-barrel AMJ96_PC00274 cefd926b8e8e52a83fc3e02c1344b2ad 189 PIRSF PIRSF001296 1 189 2.4E-76 T 12-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AMJ96_PC00274 cefd926b8e8e52a83fc3e02c1344b2ad 189 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 2 186 35.859 T 12-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AMJ96_PC00274 cefd926b8e8e52a83fc3e02c1344b2ad 189 Pfam PF02669 K+-transporting ATPase, c chain 6 184 5.6E-75 T 12-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AMJ96_PC00274 cefd926b8e8e52a83fc3e02c1344b2ad 189 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 3 184 1.3E-65 T 12-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AMJ96_CH03132 73de0b1d43cea52a0720cc53e9661980 410 SUPERFAMILY SSF47781 308 380 4.22E-10 T 12-10-2018 IPR010994 RuvA domain 2-like AMJ96_CH03132 73de0b1d43cea52a0720cc53e9661980 410 SUPERFAMILY SSF102114 47 203 1.83E-12 T 12-10-2018 AMJ96_CH03132 73de0b1d43cea52a0720cc53e9661980 410 Gene3D G3DSA:3.20.20.70 53 194 2.2E-9 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH03132 73de0b1d43cea52a0720cc53e9661980 410 TIGRFAM TIGR03916 rSAM_link_UDG: putative DNA modification/repair radical SAM protein 5 398 2.0E-170 T 12-10-2018 IPR023874 DNA modification/repair radical SAM protein, putative AMJ96_CH03132 73de0b1d43cea52a0720cc53e9661980 410 Gene3D G3DSA:1.10.150.320 312 379 7.5E-8 T 12-10-2018 AMJ96_PC00048 55fee8b704aa2aa043be646a454b4ea6 166 Gene3D G3DSA:3.90.1590.10 2 97 1.9E-14 T 12-10-2018 AMJ96_PC00048 55fee8b704aa2aa043be646a454b4ea6 166 SUPERFAMILY SSF51316 5 128 1.04E-39 T 12-10-2018 IPR011057 Mss4-like superfamily AMJ96_PC00048 55fee8b704aa2aa043be646a454b4ea6 166 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 30 113 6.6E-19 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMJ96_PD00671 d7381a877401836915adaceba0fcbb83 340 SMART SM00382 162 317 8.4E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00671 d7381a877401836915adaceba0fcbb83 340 Gene3D G3DSA:3.40.50.300 117 336 8.9E-63 T 12-10-2018 AMJ96_PD00671 d7381a877401836915adaceba0fcbb83 340 SUPERFAMILY SSF52540 14 330 5.95E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00671 d7381a877401836915adaceba0fcbb83 340 Gene3D G3DSA:3.30.450.90 9 116 7.6E-37 T 12-10-2018 AMJ96_PD00671 d7381a877401836915adaceba0fcbb83 340 TIGRFAM TIGR02788 VirB11: P-type DNA transfer ATPase VirB11 20 327 3.8E-125 T 12-10-2018 IPR014155 Type IV secretion system protein VirB11 GO:0043684|GO:0044097 AMJ96_PD00671 d7381a877401836915adaceba0fcbb83 340 Pfam PF00437 Type II/IV secretion system protein 16 315 5.8E-67 T 12-10-2018 IPR001482 Type II/IV secretion system protein AMJ96_PD00543 28df8c7329f6abfcd4dee0ad7ed23373 72 Gene3D G3DSA:3.90.820.10 1 71 4.3E-22 T 12-10-2018 AMJ96_PD00543 28df8c7329f6abfcd4dee0ad7ed23373 72 SMART SM00923 2 52 1.0E-4 T 12-10-2018 IPR005153 MbtH-like domain AMJ96_PD00543 28df8c7329f6abfcd4dee0ad7ed23373 72 Pfam PF03621 MbtH-like protein 7 51 1.6E-13 T 12-10-2018 IPR005153 MbtH-like domain AMJ96_PD00543 28df8c7329f6abfcd4dee0ad7ed23373 72 SUPERFAMILY SSF160582 3 68 1.14E-20 T 12-10-2018 IPR038020 MbtH-like domain superfamily AMJ96_PD00205 da0220328a312c3ce14f15693c7b968e 140 Pfam PF01850 PIN domain 3 124 1.4E-12 T 12-10-2018 IPR002716 PIN domain AMJ96_PD00205 da0220328a312c3ce14f15693c7b968e 140 Gene3D G3DSA:3.40.50.1010 3 140 6.6E-37 T 12-10-2018 AMJ96_PD00205 da0220328a312c3ce14f15693c7b968e 140 SUPERFAMILY SSF88723 3 138 2.35E-26 T 12-10-2018 IPR029060 PIN-like domain superfamily AMJ96_PD00205 da0220328a312c3ce14f15693c7b968e 140 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 3 134 11.255 T 12-10-2018 IPR022907 VapC family GO:0004540 AMJ96_CH02654 f6e142efe36b8baf5f8376d1bde45e7a 328 Gene3D G3DSA:3.10.310.10 1 128 2.1E-45 T 12-10-2018 AMJ96_CH02654 f6e142efe36b8baf5f8376d1bde45e7a 328 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 2 90 5.5E-28 T 12-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMJ96_CH02654 f6e142efe36b8baf5f8376d1bde45e7a 328 Pfam PF02567 Phenazine biosynthesis-like protein 8 128 3.3E-33 T 12-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMJ96_CH02654 f6e142efe36b8baf5f8376d1bde45e7a 328 SUPERFAMILY SSF54506 1 194 4.36E-46 T 12-10-2018 AMJ96_PD00208 31b9327101b8beff6d16c5e7991a6507 292 SUPERFAMILY SSF47616 118 260 8.35E-37 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily AMJ96_PD00208 31b9327101b8beff6d16c5e7991a6507 292 Pfam PF02798 Glutathione S-transferase, N-terminal domain 66 128 5.3E-7 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AMJ96_PD00208 31b9327101b8beff6d16c5e7991a6507 292 Gene3D G3DSA:1.20.1050.10 134 250 1.5E-112 T 12-10-2018 AMJ96_PD00208 31b9327101b8beff6d16c5e7991a6507 292 Pfam PF13410 Glutathione S-transferase, C-terminal domain 175 246 1.2E-11 T 12-10-2018 AMJ96_PD00208 31b9327101b8beff6d16c5e7991a6507 292 SUPERFAMILY SSF52833 38 131 1.48E-17 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_PD00208 31b9327101b8beff6d16c5e7991a6507 292 Gene3D G3DSA:3.40.30.10 19 256 1.5E-112 T 12-10-2018 AMJ96_PD00026 c7f547b0da91aef352aee61914944601 146 Gene3D G3DSA:2.170.150.70 4 113 7.2E-14 T 12-10-2018 AMJ96_PD00026 c7f547b0da91aef352aee61914944601 146 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 25 113 1.5E-20 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMJ96_PD00026 c7f547b0da91aef352aee61914944601 146 SUPERFAMILY SSF51316 3 132 2.09E-37 T 12-10-2018 IPR011057 Mss4-like superfamily AMJ96_CH01586 9f69bfb591036be15223a43912f1fe7f 204 Pfam PF00583 Acetyltransferase (GNAT) family 56 184 9.6E-7 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH01586 9f69bfb591036be15223a43912f1fe7f 204 SUPERFAMILY SSF55729 2 189 6.13E-22 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH01586 9f69bfb591036be15223a43912f1fe7f 204 Gene3D G3DSA:3.40.630.30 2 200 3.4E-55 T 12-10-2018 AMJ96_CH00487 23683d5ff072f124954a641ef7b6ad4a 260 SMART SM00382 31 228 3.2E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00487 23683d5ff072f124954a641ef7b6ad4a 260 Pfam PF00005 ABC transporter 22 180 1.2E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00487 23683d5ff072f124954a641ef7b6ad4a 260 SUPERFAMILY SSF52540 4 238 5.03E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00487 23683d5ff072f124954a641ef7b6ad4a 260 Gene3D G3DSA:3.40.50.300 2 245 6.9E-54 T 12-10-2018 AMJ96_CH00503 5570c66c2558f40b9756c155c2bcb84b 388 SUPERFAMILY SSF161098 181 371 4.32E-32 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00503 5570c66c2558f40b9756c155c2bcb84b 388 Gene3D G3DSA:1.10.3720.10 179 384 1.7E-26 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00503 5570c66c2558f40b9756c155c2bcb84b 388 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 199 377 2.2E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03815 71a5cca6b805a81adad23ac6283b7b8a 156 Gene3D G3DSA:2.60.40.790 34 139 2.1E-23 T 12-10-2018 IPR008978 HSP20-like chaperone AMJ96_CH03815 71a5cca6b805a81adad23ac6283b7b8a 156 Pfam PF00011 Hsp20/alpha crystallin family 44 138 1.8E-18 T 12-10-2018 IPR002068 Alpha crystallin/Hsp20 domain AMJ96_CH03815 71a5cca6b805a81adad23ac6283b7b8a 156 SUPERFAMILY SSF49764 5 138 9.77E-22 T 12-10-2018 IPR008978 HSP20-like chaperone AMJ96_PB00157 ddee5580f644a2e0f7af3cd34556ee8c 264 Gene3D G3DSA:3.60.15.10 10 247 8.1E-46 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_PB00157 ddee5580f644a2e0f7af3cd34556ee8c 264 SMART SM00849 42 242 8.8E-13 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_PB00157 ddee5580f644a2e0f7af3cd34556ee8c 264 Pfam PF00753 Metallo-beta-lactamase superfamily 44 210 4.3E-16 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_PB00157 ddee5580f644a2e0f7af3cd34556ee8c 264 SUPERFAMILY SSF56281 42 245 3.41E-30 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH01474 d2fb20f924bdeb6778d597ca3950cf17 122 Pfam PF04480 Protein of unknown function (DUF559) 10 116 9.4E-40 T 12-10-2018 IPR007569 Protein of unknown function DUF559 AMJ96_CH01474 d2fb20f924bdeb6778d597ca3950cf17 122 SUPERFAMILY SSF52980 7 117 1.18E-26 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMJ96_CH01474 d2fb20f924bdeb6778d597ca3950cf17 122 Gene3D G3DSA:3.40.960.10 19 119 6.9E-33 T 12-10-2018 AMJ96_CH01593 d22044775df39f5909159abf44bd12f7 191 Pfam PF02563 Polysaccharide biosynthesis/export protein 40 112 7.3E-22 T 12-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 AMJ96_CH01593 d22044775df39f5909159abf44bd12f7 191 Pfam PF10531 SLBB domain 118 165 8.1E-9 T 12-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01593 d22044775df39f5909159abf44bd12f7 191 Gene3D G3DSA:3.30.1950.10 46 116 5.6E-14 T 12-10-2018 AMJ96_CH00318 b518c33730b4dd8471c0222387e20e7a 429 Pfam PF01189 16S rRNA methyltransferase RsmB/F 230 426 7.3E-43 T 12-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 AMJ96_CH00318 b518c33730b4dd8471c0222387e20e7a 429 SUPERFAMILY SSF53335 118 428 3.28E-64 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH00318 b518c33730b4dd8471c0222387e20e7a 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 301 313 2.2E-28 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMJ96_CH00318 b518c33730b4dd8471c0222387e20e7a 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 410 427 2.2E-28 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMJ96_CH00318 b518c33730b4dd8471c0222387e20e7a 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 207 221 2.2E-28 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMJ96_CH00318 b518c33730b4dd8471c0222387e20e7a 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 351 367 2.2E-28 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMJ96_CH00318 b518c33730b4dd8471c0222387e20e7a 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 236 246 2.2E-28 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase AMJ96_CH00318 b518c33730b4dd8471c0222387e20e7a 429 Gene3D G3DSA:3.40.50.150 122 427 1.3E-72 T 12-10-2018 AMJ96_CH01056 372ba9b434ff1dfe31581dffc5c271dc 131 Pfam PF13564 DoxX-like family 9 107 4.0E-12 T 12-10-2018 IPR032808 DoxX family AMJ96_CH01289 4e2712f6c5ed5f27c41e84fd28f66cb0 176 Pfam PF13302 Acetyltransferase (GNAT) domain 10 148 7.3E-31 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH01289 4e2712f6c5ed5f27c41e84fd28f66cb0 176 Gene3D G3DSA:3.40.630.30 2 159 4.0E-42 T 12-10-2018 AMJ96_CH01289 4e2712f6c5ed5f27c41e84fd28f66cb0 176 SUPERFAMILY SSF55729 3 154 3.36E-38 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH02750 02d9bf42593835602e86248f568cd579 133 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 24 80 1.1E-4 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMJ96_CH02750 02d9bf42593835602e86248f568cd579 133 Gene3D G3DSA:2.170.150.70 2 120 8.1E-16 T 12-10-2018 AMJ96_CH02750 02d9bf42593835602e86248f568cd579 133 SUPERFAMILY SSF51316 1 123 2.2E-16 T 12-10-2018 IPR011057 Mss4-like superfamily AMJ96_PC00164 a5886a3e434962e9d70dbd66bd0ceb85 644 SUPERFAMILY SSF52964 222 347 3.92E-6 T 12-10-2018 AMJ96_PC00164 a5886a3e434962e9d70dbd66bd0ceb85 644 SUPERFAMILY SSF55073 5 183 8.79E-43 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_PC00164 a5886a3e434962e9d70dbd66bd0ceb85 644 SUPERFAMILY SSF48452 388 582 1.01E-19 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_PC00164 a5886a3e434962e9d70dbd66bd0ceb85 644 Gene3D G3DSA:3.30.70.1230 5 185 1.1E-53 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_PC00164 a5886a3e434962e9d70dbd66bd0ceb85 644 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 12 170 1.5E-12 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH02816 c2cce0db82adac1d078bd24f7b121d6f 92 Gene3D G3DSA:3.60.15.10 1 68 6.6E-14 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH00634 ee2422d1ff8f75386e581883fa03a33f 165 Pfam PF07681 DoxX 35 128 4.4E-18 T 12-10-2018 IPR032808 DoxX family AMJ96_CH03061 16937bdc6c52ca1638144920c3138b76 367 Gene3D G3DSA:3.40.190.10 146 268 5.7E-39 T 12-10-2018 AMJ96_CH03061 16937bdc6c52ca1638144920c3138b76 367 Pfam PF13343 Bacterial extracellular solute-binding protein 95 325 3.1E-33 T 12-10-2018 AMJ96_CH03061 16937bdc6c52ca1638144920c3138b76 367 SUPERFAMILY SSF53850 43 361 1.25E-50 T 12-10-2018 AMJ96_CH03061 16937bdc6c52ca1638144920c3138b76 367 Gene3D G3DSA:3.40.190.10 55 322 5.7E-39 T 12-10-2018 AMJ96_CH00784 d974ac8f277733ec4dbf96acf8593395 178 SUPERFAMILY SSF48452 65 159 2.85E-16 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH00784 d974ac8f277733ec4dbf96acf8593395 178 Pfam PF13432 Tetratricopeptide repeat 69 127 5.2E-7 T 12-10-2018 AMJ96_CH00784 d974ac8f277733ec4dbf96acf8593395 178 Gene3D G3DSA:1.25.40.10 46 173 4.3E-17 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH00784 d974ac8f277733ec4dbf96acf8593395 178 SMART SM00028 128 161 190.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH00784 d974ac8f277733ec4dbf96acf8593395 178 SMART SM00028 94 127 0.0024 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH02348 9dcef1f96c90ce488558ac7d1c1527da 743 TIGRFAM TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II 19 734 4.5E-291 T 12-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMJ96_CH02348 9dcef1f96c90ce488558ac7d1c1527da 743 Gene3D G3DSA:3.90.650.10 31 367 3.5E-129 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMJ96_CH02348 9dcef1f96c90ce488558ac7d1c1527da 743 SUPERFAMILY SSF55326 14 196 1.36E-49 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMJ96_CH02348 9dcef1f96c90ce488558ac7d1c1527da 743 Gene3D G3DSA:3.30.1330.10 45 194 3.5E-129 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMJ96_CH02348 9dcef1f96c90ce488558ac7d1c1527da 743 Pfam PF00586 AIR synthase related protein, N-terminal domain 87 189 2.0E-23 T 12-10-2018 IPR016188 PurM-like, N-terminal domain AMJ96_CH02348 9dcef1f96c90ce488558ac7d1c1527da 743 Pfam PF00586 AIR synthase related protein, N-terminal domain 452 556 9.7E-22 T 12-10-2018 IPR016188 PurM-like, N-terminal domain AMJ96_CH02348 9dcef1f96c90ce488558ac7d1c1527da 743 Pfam PF02769 AIR synthase related protein, C-terminal domain 571 707 4.8E-21 T 12-10-2018 IPR010918 PurM-like, C-terminal domain AMJ96_CH02348 9dcef1f96c90ce488558ac7d1c1527da 743 Pfam PF02769 AIR synthase related protein, C-terminal domain 204 355 1.6E-31 T 12-10-2018 IPR010918 PurM-like, C-terminal domain AMJ96_CH02348 9dcef1f96c90ce488558ac7d1c1527da 743 SUPERFAMILY SSF56042 568 734 9.57E-36 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMJ96_CH02348 9dcef1f96c90ce488558ac7d1c1527da 743 PIRSF PIRSF001587 5 737 1.1E-281 T 12-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMJ96_CH02348 9dcef1f96c90ce488558ac7d1c1527da 743 Gene3D G3DSA:3.90.650.10 567 736 2.2E-35 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMJ96_CH02348 9dcef1f96c90ce488558ac7d1c1527da 743 SUPERFAMILY SSF55326 396 564 4.58E-52 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMJ96_CH02348 9dcef1f96c90ce488558ac7d1c1527da 743 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 1 743 329.508 T 12-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 AMJ96_CH02348 9dcef1f96c90ce488558ac7d1c1527da 743 Gene3D G3DSA:3.30.1330.10 391 559 1.3E-55 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily AMJ96_CH02348 9dcef1f96c90ce488558ac7d1c1527da 743 SUPERFAMILY SSF56042 199 424 8.07E-54 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily AMJ96_CH00548 9732617a752247042808defed4a3e1fc 291 SUPERFAMILY SSF53850 60 289 3.76E-49 T 12-10-2018 AMJ96_CH00548 9732617a752247042808defed4a3e1fc 291 Gene3D G3DSA:3.40.190.10 147 246 1.2E-50 T 12-10-2018 AMJ96_CH00548 9732617a752247042808defed4a3e1fc 291 Gene3D G3DSA:3.40.190.10 63 285 1.2E-50 T 12-10-2018 AMJ96_CH00548 9732617a752247042808defed4a3e1fc 291 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 60 287 2.2E-45 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH00548 9732617a752247042808defed4a3e1fc 291 SMART SM00062 59 289 1.2E-39 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH03629 bff2e2073f0b5e0828a58d11f3f8b34f 146 SUPERFAMILY SSF54631 1 141 3.16E-30 T 12-10-2018 AMJ96_CH03629 bff2e2073f0b5e0828a58d11f3f8b34f 146 Pfam PF00571 CBS domain 72 125 4.5E-9 T 12-10-2018 IPR000644 CBS domain AMJ96_CH03629 bff2e2073f0b5e0828a58d11f3f8b34f 146 Pfam PF00571 CBS domain 3 61 4.0E-8 T 12-10-2018 IPR000644 CBS domain AMJ96_CH03629 bff2e2073f0b5e0828a58d11f3f8b34f 146 Gene3D G3DSA:3.10.580.10 1 142 1.8E-36 T 12-10-2018 AMJ96_CH03629 bff2e2073f0b5e0828a58d11f3f8b34f 146 SMART SM00116 79 126 9.9E-7 T 12-10-2018 IPR000644 CBS domain AMJ96_CH03629 bff2e2073f0b5e0828a58d11f3f8b34f 146 SMART SM00116 13 61 2.0 T 12-10-2018 IPR000644 CBS domain AMJ96_CH04219 77537fd36486dcbe486ad4b512be9a59 222 SUPERFAMILY SSF89392 46 208 8.24E-28 T 12-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX AMJ96_CH04219 77537fd36486dcbe486ad4b512be9a59 222 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 56 208 4.2E-44 T 12-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like AMJ96_CH04219 77537fd36486dcbe486ad4b512be9a59 222 Gene3D G3DSA:2.50.20.10 44 213 9.9E-22 T 12-10-2018 AMJ96_CH00860 5f0abed99bfcd255e176f7977a776ebb 159 Hamap MF_00771 UPF0310 protein . 2 136 28.206 T 12-10-2018 IPR022996 Uncharacterised protein family UPF0310 AMJ96_CH00860 5f0abed99bfcd255e176f7977a776ebb 159 SUPERFAMILY SSF88697 5 136 2.83E-32 T 12-10-2018 IPR015947 PUA-like superfamily AMJ96_CH00860 5f0abed99bfcd255e176f7977a776ebb 159 Gene3D G3DSA:3.10.590.10 2 135 8.7E-29 T 12-10-2018 AMJ96_CH00860 5f0abed99bfcd255e176f7977a776ebb 159 Pfam PF01878 EVE domain 4 134 6.5E-17 T 12-10-2018 IPR002740 EVE domain AMJ96_CH03115 4d70c15fea9e04942fc380874c1d205e 115 Gene3D G3DSA:2.170.150.70 3 115 1.1E-29 T 12-10-2018 AMJ96_CH03115 4d70c15fea9e04942fc380874c1d205e 115 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 25 83 7.3E-8 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMJ96_CH03115 4d70c15fea9e04942fc380874c1d205e 115 SUPERFAMILY SSF51316 1 110 4.81E-29 T 12-10-2018 IPR011057 Mss4-like superfamily AMJ96_CH02015 fed16096f71cc6820bac8eb694aac8b8 317 SUPERFAMILY SSF51395 5 277 2.01E-83 T 12-10-2018 AMJ96_CH02015 fed16096f71cc6820bac8eb694aac8b8 317 Gene3D G3DSA:3.20.20.70 1 237 1.1E-77 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH02015 fed16096f71cc6820bac8eb694aac8b8 317 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 88 106 - T 12-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMJ96_CH02015 fed16096f71cc6820bac8eb694aac8b8 317 Pfam PF01207 Dihydrouridine synthase (Dus) 8 307 2.3E-111 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMJ96_CH02015 fed16096f71cc6820bac8eb694aac8b8 317 PIRSF PIRSF006621 1 317 1.5E-103 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AMJ96_CH02015 fed16096f71cc6820bac8eb694aac8b8 317 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 2 306 8.8E-103 T 12-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 AMJ96_PD00118 8c330c5d9152151c3b524f79e15038ec 188 Pfam PF02397 Bacterial sugar transferase 4 181 7.0E-53 T 12-10-2018 IPR003362 Bacterial sugar transferase AMJ96_CH00535 6a2a4deb0f005f2e997eb96ae4a16e47 330 SUPERFAMILY SSF118352 276 327 2.88E-14 T 12-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 AMJ96_CH00535 6a2a4deb0f005f2e997eb96ae4a16e47 330 Gene3D G3DSA:3.90.1280.10 277 329 8.9E-15 T 12-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 AMJ96_CH00535 6a2a4deb0f005f2e997eb96ae4a16e47 330 PIRSF PIRSF005261 10 329 9.2E-71 T 12-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 AMJ96_CH00535 6a2a4deb0f005f2e997eb96ae4a16e47 330 Gene3D G3DSA:3.55.30.10 13 204 1.3E-59 T 12-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 AMJ96_CH00535 6a2a4deb0f005f2e997eb96ae4a16e47 330 SUPERFAMILY SSF64397 16 284 8.37E-65 T 12-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 AMJ96_CH00535 6a2a4deb0f005f2e997eb96ae4a16e47 330 Pfam PF01430 Hsp33 protein 17 322 1.5E-76 T 12-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 AMJ96_CH00535 6a2a4deb0f005f2e997eb96ae4a16e47 330 Gene3D G3DSA:1.10.287.480 226 276 1.8E-7 T 12-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily AMJ96_CH00238 b7f025727958e38b137b5f2d801c7a1d 411 SUPERFAMILY SSF53335 64 251 7.09E-25 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH00238 b7f025727958e38b137b5f2d801c7a1d 411 Gene3D G3DSA:3.40.50.720 312 411 2.5E-38 T 12-10-2018 AMJ96_CH00238 b7f025727958e38b137b5f2d801c7a1d 411 Gene3D G3DSA:3.40.50.150 63 258 7.7E-42 T 12-10-2018 AMJ96_CH00238 b7f025727958e38b137b5f2d801c7a1d 411 Pfam PF08421 Putative zinc binding domain 6 67 4.6E-25 T 12-10-2018 IPR013630 Methyltransferase putative zinc binding domain AMJ96_CH00238 b7f025727958e38b137b5f2d801c7a1d 411 Pfam PF08484 C-methyltransferase C-terminal domain 246 405 2.5E-63 T 12-10-2018 IPR013691 C-methyltransferase AMJ96_CH00238 b7f025727958e38b137b5f2d801c7a1d 411 Pfam PF13489 Methyltransferase domain 97 239 7.6E-12 T 12-10-2018 AMJ96_CH00238 b7f025727958e38b137b5f2d801c7a1d 411 Gene3D G3DSA:2.20.25.520 1 57 1.3E-18 T 12-10-2018 IPR038576 Methyltransferase putative zinc binding domain superfamily AMJ96_CH00941 3e4062502c460a9d6088af657bddd44b 216 SUPERFAMILY SSF46785 7 71 1.39E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00941 3e4062502c460a9d6088af657bddd44b 216 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 67 2.3E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH00941 3e4062502c460a9d6088af657bddd44b 216 Gene3D G3DSA:1.10.10.10 2 68 7.3E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00941 3e4062502c460a9d6088af657bddd44b 216 Pfam PF07729 FCD domain 77 199 1.8E-27 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH00941 3e4062502c460a9d6088af657bddd44b 216 SMART SM00345 9 67 4.0E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH00941 3e4062502c460a9d6088af657bddd44b 216 SMART SM00895 77 201 8.8E-21 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH00941 3e4062502c460a9d6088af657bddd44b 216 SUPERFAMILY SSF48008 74 206 2.88E-27 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH00941 3e4062502c460a9d6088af657bddd44b 216 Gene3D G3DSA:1.20.120.530 73 202 2.1E-29 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_CH00941 3e4062502c460a9d6088af657bddd44b 216 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 57 1.5E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH00941 3e4062502c460a9d6088af657bddd44b 216 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 27 41 1.5E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PA00222 a2a404957a0aa04a47f8e3843fe09017 604 PRINTS PR00762 Chloride channel signature 133 152 9.7E-25 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AMJ96_PA00222 a2a404957a0aa04a47f8e3843fe09017 604 PRINTS PR00762 Chloride channel signature 347 367 9.7E-25 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AMJ96_PA00222 a2a404957a0aa04a47f8e3843fe09017 604 PRINTS PR00762 Chloride channel signature 376 392 9.7E-25 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AMJ96_PA00222 a2a404957a0aa04a47f8e3843fe09017 604 PRINTS PR00762 Chloride channel signature 394 413 9.7E-25 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AMJ96_PA00222 a2a404957a0aa04a47f8e3843fe09017 604 PRINTS PR00762 Chloride channel signature 184 203 9.7E-25 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AMJ96_PA00222 a2a404957a0aa04a47f8e3843fe09017 604 SUPERFAMILY SSF54631 457 581 5.31E-22 T 12-10-2018 AMJ96_PA00222 a2a404957a0aa04a47f8e3843fe09017 604 Gene3D G3DSA:1.10.3080.10 22 448 1.1E-84 T 12-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 AMJ96_PA00222 a2a404957a0aa04a47f8e3843fe09017 604 Gene3D G3DSA:3.10.580.10 458 583 9.8E-19 T 12-10-2018 AMJ96_PA00222 a2a404957a0aa04a47f8e3843fe09017 604 SUPERFAMILY SSF81340 27 447 8.11E-94 T 12-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 AMJ96_PA00222 a2a404957a0aa04a47f8e3843fe09017 604 Pfam PF00654 Voltage gated chloride channel 91 425 4.5E-72 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AMJ96_PA00222 a2a404957a0aa04a47f8e3843fe09017 604 SMART SM00116 533 582 1.4E-8 T 12-10-2018 IPR000644 CBS domain AMJ96_PA00222 a2a404957a0aa04a47f8e3843fe09017 604 SMART SM00116 466 516 2.7 T 12-10-2018 IPR000644 CBS domain AMJ96_PA00222 a2a404957a0aa04a47f8e3843fe09017 604 Pfam PF00571 CBS domain 538 580 9.8E-6 T 12-10-2018 IPR000644 CBS domain AMJ96_PA00222 a2a404957a0aa04a47f8e3843fe09017 604 Pfam PF00571 CBS domain 459 511 3.9E-8 T 12-10-2018 IPR000644 CBS domain AMJ96_CH01698 2efd4b964aa51d4329a1a43de612178f 66 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 8 62 4.1E-22 T 12-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 AMJ96_CH01698 2efd4b964aa51d4329a1a43de612178f 66 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 10 38 - T 12-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMJ96_CH01698 2efd4b964aa51d4329a1a43de612178f 66 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 9 61 1.8E-19 T 12-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMJ96_CH01698 2efd4b964aa51d4329a1a43de612178f 66 Hamap MF_00422 Protein translocase subunit SecE [secE]. 6 60 11.584 T 12-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AMJ96_CH01698 2efd4b964aa51d4329a1a43de612178f 66 Gene3D G3DSA:1.20.5.1030 5 61 1.0E-15 T 12-10-2018 IPR038379 SecE superfamily AMJ96_CH02095 7ff7c4c5a382a0f730bcfb7039ca138d 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 260 6.4E-19 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02095 7ff7c4c5a382a0f730bcfb7039ca138d 280 Gene3D G3DSA:1.10.3720.10 66 268 3.9E-18 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02095 7ff7c4c5a382a0f730bcfb7039ca138d 280 SUPERFAMILY SSF161098 69 255 3.4E-23 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03152 5fb552904947953837027c02b6daffba 229 SUPERFAMILY SSF53448 4 224 1.01E-26 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03152 5fb552904947953837027c02b6daffba 229 Gene3D G3DSA:3.90.550.10 4 221 8.9E-8 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_PD00443 4e194dcc48039294f9a51aabdcfd8486 487 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 286 297 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMJ96_PD00443 4e194dcc48039294f9a51aabdcfd8486 487 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 258 265 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMJ96_PD00443 4e194dcc48039294f9a51aabdcfd8486 487 Gene3D G3DSA:3.40.605.10 18 476 9.1E-161 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_PD00443 4e194dcc48039294f9a51aabdcfd8486 487 Pfam PF00171 Aldehyde dehydrogenase family 28 483 3.0E-148 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_PD00443 4e194dcc48039294f9a51aabdcfd8486 487 SUPERFAMILY SSF53720 9 485 6.02E-155 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_PD00443 4e194dcc48039294f9a51aabdcfd8486 487 Gene3D G3DSA:3.40.309.10 263 452 9.1E-161 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_PD00625 6e27888e8a24a22fe6205830f6d71d23 124 Pfam PF02635 DsrE/DsrF-like family 1 124 1.4E-9 T 12-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein AMJ96_PD00625 6e27888e8a24a22fe6205830f6d71d23 124 SUPERFAMILY SSF75169 1 124 1.12E-7 T 12-10-2018 IPR027396 DsrEFH-like AMJ96_CH00759 a80f385613e0cfadd65240754046c31b 380 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH00759 a80f385613e0cfadd65240754046c31b 380 SMART SM00382 47 230 1.5E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH00759 a80f385613e0cfadd65240754046c31b 380 Pfam PF08402 TOBE domain 298 378 7.4E-15 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_CH00759 a80f385613e0cfadd65240754046c31b 380 SUPERFAMILY SSF52540 23 262 1.69E-89 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00759 a80f385613e0cfadd65240754046c31b 380 Gene3D G3DSA:3.40.50.300 18 257 8.0E-80 T 12-10-2018 AMJ96_CH00759 a80f385613e0cfadd65240754046c31b 380 SUPERFAMILY SSF50331 255 377 1.29E-16 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH00759 a80f385613e0cfadd65240754046c31b 380 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 53 376 1.1E-123 T 12-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 AMJ96_CH00759 a80f385613e0cfadd65240754046c31b 380 Gene3D G3DSA:2.40.50.100 300 370 3.0E-7 T 12-10-2018 AMJ96_CH00759 a80f385613e0cfadd65240754046c31b 380 Gene3D G3DSA:2.40.50.140 258 299 3.0E-7 T 12-10-2018 AMJ96_CH00759 a80f385613e0cfadd65240754046c31b 380 Pfam PF00005 ABC transporter 39 180 6.5E-36 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH00533 53de3fec840e8fd8921d5ff7c5603458 399 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 6 390 69.086 T 12-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AMJ96_CH00533 53de3fec840e8fd8921d5ff7c5603458 399 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 9 386 1.2E-137 T 12-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AMJ96_CH00533 53de3fec840e8fd8921d5ff7c5603458 399 Gene3D G3DSA:3.40.640.10 50 295 1.2E-141 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH00533 53de3fec840e8fd8921d5ff7c5603458 399 PIRSF PIRSF000521 11 149 7.5E-8 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH00533 53de3fec840e8fd8921d5ff7c5603458 399 PIRSF PIRSF000521 159 390 3.6E-42 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH00533 53de3fec840e8fd8921d5ff7c5603458 399 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 213 250 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH00533 53de3fec840e8fd8921d5ff7c5603458 399 Gene3D G3DSA:3.90.1150.10 15 380 1.2E-141 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH00533 53de3fec840e8fd8921d5ff7c5603458 399 SUPERFAMILY SSF53383 8 387 1.06E-123 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH00533 53de3fec840e8fd8921d5ff7c5603458 399 Pfam PF00202 Aminotransferase class-III 14 386 3.9E-119 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_PC00330 76bd6d41c6b572a0801f929dd820ca0f 314 Pfam PF00482 Type II secretion system (T2SS), protein F 167 296 8.9E-16 T 12-10-2018 IPR018076 Type II secretion system F domain AMJ96_PD00071 97b2cd6ec38ec921d6c022aeeb09f93a 242 SUPERFAMILY SSF46785 146 217 7.18E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00071 97b2cd6ec38ec921d6c022aeeb09f93a 242 Gene3D G3DSA:2.60.120.10 4 140 2.0E-6 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PD00071 97b2cd6ec38ec921d6c022aeeb09f93a 242 Gene3D G3DSA:1.10.10.10 142 216 2.4E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00071 97b2cd6ec38ec921d6c022aeeb09f93a 242 SUPERFAMILY SSF51206 7 134 8.51E-9 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like AMJ96_PD00071 97b2cd6ec38ec921d6c022aeeb09f93a 242 Pfam PF13545 Crp-like helix-turn-helix domain 149 214 1.2E-12 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AMJ96_CH03858 d1ac89de8b2c17188b8382190d161924 160 Pfam PF06186 Protein of unknown function (DUF992) 16 155 5.0E-47 T 12-10-2018 IPR009333 Protein of unknown function DUF992 AMJ96_CH01875 ceee69c33b494d24edf5b6783d48bcf5 275 ProSitePatterns PS01218 TatC family signature. 169 188 - T 12-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site AMJ96_CH01875 ceee69c33b494d24edf5b6783d48bcf5 275 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 12 241 6.1E-64 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMJ96_CH01875 ceee69c33b494d24edf5b6783d48bcf5 275 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 11 38 1.0E-43 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMJ96_CH01875 ceee69c33b494d24edf5b6783d48bcf5 275 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 94 112 1.0E-43 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMJ96_CH01875 ceee69c33b494d24edf5b6783d48bcf5 275 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 112 138 1.0E-43 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMJ96_CH01875 ceee69c33b494d24edf5b6783d48bcf5 275 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 169 197 1.0E-43 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMJ96_CH01875 ceee69c33b494d24edf5b6783d48bcf5 275 Pfam PF00902 Sec-independent protein translocase protein (TatC) 14 236 7.0E-69 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMJ96_CH01875 ceee69c33b494d24edf5b6783d48bcf5 275 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 7 253 16.783 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AMJ96_PD00209 7867647817d60e28fc38e9f61abc8c88 150 Pfam PF09370 Phosphoenolpyruvate hydrolase-like 87 150 3.5E-20 T 12-10-2018 IPR009215 TIM-barrel domain, IGPS-like AMJ96_PD00209 7867647817d60e28fc38e9f61abc8c88 150 Gene3D G3DSA:3.20.20.70 58 128 1.9E-11 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH02889 bab218e16f1ee1014a5194ae24396664 325 Gene3D G3DSA:3.40.190.10 27 291 2.4E-69 T 12-10-2018 AMJ96_CH02889 bab218e16f1ee1014a5194ae24396664 325 PIRSF PIRSF002825 1 319 1.8E-59 T 12-10-2018 IPR026045 Ferric binding protein AMJ96_CH02889 bab218e16f1ee1014a5194ae24396664 325 Pfam PF13343 Bacterial extracellular solute-binding protein 74 296 6.2E-30 T 12-10-2018 AMJ96_CH02889 bab218e16f1ee1014a5194ae24396664 325 Gene3D G3DSA:3.40.190.10 128 302 2.4E-69 T 12-10-2018 AMJ96_CH02889 bab218e16f1ee1014a5194ae24396664 325 SUPERFAMILY SSF53850 21 316 3.51E-68 T 12-10-2018 AMJ96_PC00372 65f806e9057bd44b361432eea14f86d9 453 Pfam PF05048 Periplasmic copper-binding protein (NosD) 161 307 2.2E-8 T 12-10-2018 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 AMJ96_PC00372 65f806e9057bd44b361432eea14f86d9 453 SUPERFAMILY SSF51126 40 301 1.82E-15 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor AMJ96_PC00372 65f806e9057bd44b361432eea14f86d9 453 Gene3D G3DSA:2.160.20.10 1 414 1.2E-156 T 12-10-2018 IPR012334 Pectin lyase fold AMJ96_PD00597 380be537515633243ba7db4afba426a1 271 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 164 1.4E-20 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_PD00597 380be537515633243ba7db4afba426a1 271 SUPERFAMILY SSF51735 1 225 4.45E-41 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00597 380be537515633243ba7db4afba426a1 271 Gene3D G3DSA:3.40.50.720 1 226 1.0E-56 T 12-10-2018 AMJ96_CH02156 404866a719319e7af8585ae799a915a1 185 Pfam PF04229 GrpB protein 3 167 1.3E-37 T 12-10-2018 IPR007344 GrpB/Dephospho-CoA kinase AMJ96_CH02156 404866a719319e7af8585ae799a915a1 185 SUPERFAMILY SSF81301 5 174 3.92E-35 T 12-10-2018 AMJ96_CH02156 404866a719319e7af8585ae799a915a1 185 Gene3D G3DSA:3.30.460.10 1 175 1.5E-38 T 12-10-2018 AMJ96_CH01634 a40eb888e88c18dc93e1f9ffb9fd58ac 121 Gene3D G3DSA:1.20.58.1610 1 121 5.8E-43 T 12-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01634 a40eb888e88c18dc93e1f9ffb9fd58ac 121 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 4 121 19.94 T 12-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 AMJ96_CH01634 a40eb888e88c18dc93e1f9ffb9fd58ac 121 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 25 120 1.2E-37 T 12-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01650 9442b261c82c64d06e65d6e977cec24c 254 Pfam PF03099 Biotin/lipoate A/B protein ligase family 41 146 1.3E-10 T 12-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AMJ96_CH01650 9442b261c82c64d06e65d6e977cec24c 254 SUPERFAMILY SSF55681 14 203 2.36E-47 T 12-10-2018 AMJ96_CH01650 9442b261c82c64d06e65d6e977cec24c 254 SUPERFAMILY SSF50037 210 253 1.74E-6 T 12-10-2018 IPR008988 Transcriptional repressor, C-terminal AMJ96_CH01650 9442b261c82c64d06e65d6e977cec24c 254 Gene3D G3DSA:3.30.930.10 3 206 4.5E-51 T 12-10-2018 AMJ96_CH01650 9442b261c82c64d06e65d6e977cec24c 254 Pfam PF02237 Biotin protein ligase C terminal domain 209 254 1.3E-8 T 12-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_CH01650 9442b261c82c64d06e65d6e977cec24c 254 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 18 251 3.7E-49 T 12-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AMJ96_CH01650 9442b261c82c64d06e65d6e977cec24c 254 Gene3D G3DSA:2.30.30.100 208 253 1.1E-7 T 12-10-2018 AMJ96_PD00219 736f07e8fb2c65484296227aa97e6a76 169 Gene3D G3DSA:3.30.1060.10 1 165 5.6E-73 T 12-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMJ96_PD00219 736f07e8fb2c65484296227aa97e6a76 169 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 5 152 3.9E-51 T 12-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMJ96_PD00219 736f07e8fb2c65484296227aa97e6a76 169 SUPERFAMILY SSF55068 4 160 7.72E-66 T 12-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMJ96_PD00219 736f07e8fb2c65484296227aa97e6a76 169 Pfam PF01625 Peptide methionine sulfoxide reductase 6 152 1.5E-58 T 12-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMJ96_PD00219 736f07e8fb2c65484296227aa97e6a76 169 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 3 158 34.592 T 12-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMJ96_CH02479 7414444fe64686e3e3da42632f5a9930 252 Gene3D G3DSA:3.40.50.1820 24 250 1.4E-36 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02479 7414444fe64686e3e3da42632f5a9930 252 Pfam PF12697 Alpha/beta hydrolase family 31 241 1.1E-14 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH02479 7414444fe64686e3e3da42632f5a9930 252 SUPERFAMILY SSF53474 23 244 4.66E-26 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PD00674 860f50fe02931a1bd3d0e378ec1c1ebe 223 PIRSF PIRSF003299 1 223 9.4E-102 T 12-10-2018 IPR026264 Type IV secretion system protein VirB8/PtlE GO:0030255 AMJ96_PD00674 860f50fe02931a1bd3d0e378ec1c1ebe 223 SUPERFAMILY SSF54427 85 222 5.26E-43 T 12-10-2018 IPR032710 NTF2-like domain superfamily AMJ96_PD00674 860f50fe02931a1bd3d0e378ec1c1ebe 223 Gene3D G3DSA:3.10.450.230 83 223 4.4E-50 T 12-10-2018 AMJ96_PD00674 860f50fe02931a1bd3d0e378ec1c1ebe 223 Pfam PF04335 VirB8 protein 13 220 4.1E-64 T 12-10-2018 IPR007430 Bacterial virulence protein VirB8 GO:0016020 AMJ96_CH02505 c2d26f2b4de7b7438d706dc28a3d3cdb 210 SUPERFAMILY SSF52141 7 209 1.28E-53 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_CH02505 c2d26f2b4de7b7438d706dc28a3d3cdb 210 SMART SM00987 39 202 4.0E-30 T 12-10-2018 AMJ96_CH02505 c2d26f2b4de7b7438d706dc28a3d3cdb 210 SMART SM00986 39 202 4.0E-30 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_CH02505 c2d26f2b4de7b7438d706dc28a3d3cdb 210 Pfam PF03167 Uracil DNA glycosylase superfamily 44 198 3.0E-22 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_CH02505 c2d26f2b4de7b7438d706dc28a3d3cdb 210 Gene3D G3DSA:3.40.470.10 3 210 3.3E-65 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AMJ96_CH00681 db9499ea071310e859194ab8f1e45fbf 347 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 5 340 39.05 T 12-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMJ96_CH00681 db9499ea071310e859194ab8f1e45fbf 347 SMART SM00448 5 124 2.3E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00681 db9499ea071310e859194ab8f1e45fbf 347 SUPERFAMILY SSF52738 154 339 3.66E-67 T 12-10-2018 IPR035909 Methylesterase CheB, C-terminal AMJ96_CH00681 db9499ea071310e859194ab8f1e45fbf 347 PIRSF PIRSF000876 2 344 8.0E-130 T 12-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMJ96_CH00681 db9499ea071310e859194ab8f1e45fbf 347 SUPERFAMILY SSF52172 5 137 1.71E-28 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH00681 db9499ea071310e859194ab8f1e45fbf 347 Gene3D G3DSA:3.40.50.180 148 344 2.6E-71 T 12-10-2018 IPR035909 Methylesterase CheB, C-terminal AMJ96_CH00681 db9499ea071310e859194ab8f1e45fbf 347 Gene3D G3DSA:3.40.50.2300 4 114 1.9E-29 T 12-10-2018 AMJ96_CH00681 db9499ea071310e859194ab8f1e45fbf 347 Pfam PF00072 Response regulator receiver domain 7 109 4.1E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00681 db9499ea071310e859194ab8f1e45fbf 347 Pfam PF01339 CheB methylesterase 157 335 6.4E-58 T 12-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AMJ96_CH02204 83c18f48658fffef6461ae0602c604b1 530 Gene3D G3DSA:1.10.246.130 242 347 2.1E-25 T 12-10-2018 AMJ96_CH02204 83c18f48658fffef6461ae0602c604b1 530 Pfam PF01019 Gamma-glutamyltranspeptidase 32 525 2.1E-140 T 12-10-2018 AMJ96_CH02204 83c18f48658fffef6461ae0602c604b1 530 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 17 522 3.6E-112 T 12-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 AMJ96_CH02204 83c18f48658fffef6461ae0602c604b1 530 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 128 147 2.8E-37 T 12-10-2018 AMJ96_CH02204 83c18f48658fffef6461ae0602c604b1 530 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 39 64 2.8E-37 T 12-10-2018 AMJ96_CH02204 83c18f48658fffef6461ae0602c604b1 530 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 374 392 2.8E-37 T 12-10-2018 AMJ96_CH02204 83c18f48658fffef6461ae0602c604b1 530 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 110 128 2.8E-37 T 12-10-2018 AMJ96_CH02204 83c18f48658fffef6461ae0602c604b1 530 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 226 242 2.8E-37 T 12-10-2018 AMJ96_CH02204 83c18f48658fffef6461ae0602c604b1 530 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 405 420 2.8E-37 T 12-10-2018 AMJ96_CH02204 83c18f48658fffef6461ae0602c604b1 530 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 255 274 2.8E-37 T 12-10-2018 AMJ96_CH02204 83c18f48658fffef6461ae0602c604b1 530 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 350 368 2.8E-37 T 12-10-2018 AMJ96_CH02204 83c18f48658fffef6461ae0602c604b1 530 SUPERFAMILY SSF56235 4 530 3.67E-164 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMJ96_CH02204 83c18f48658fffef6461ae0602c604b1 530 Gene3D G3DSA:3.60.20.40 350 530 3.2E-56 T 12-10-2018 AMJ96_CH03773 cfdb86c0fc158fb4417ceea755565251 86 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 7 22 2.0E-7 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH03773 cfdb86c0fc158fb4417ceea755565251 86 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 39 54 2.0E-7 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH03773 cfdb86c0fc158fb4417ceea755565251 86 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 69 2.0E-7 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH03773 cfdb86c0fc158fb4417ceea755565251 86 Pfam PF12840 Helix-turn-helix domain 6 62 3.0E-14 T 12-10-2018 AMJ96_CH03773 cfdb86c0fc158fb4417ceea755565251 86 SMART SM00418 5 82 1.2E-14 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH03773 cfdb86c0fc158fb4417ceea755565251 86 SUPERFAMILY SSF46785 5 85 4.67E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03773 cfdb86c0fc158fb4417ceea755565251 86 Gene3D G3DSA:1.10.10.10 4 86 7.5E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03396 14eb4c1c28b1af21b98f22553fbd6993 291 Gene3D G3DSA:3.40.190.10 163 259 1.0E-64 T 12-10-2018 AMJ96_CH03396 14eb4c1c28b1af21b98f22553fbd6993 291 SUPERFAMILY SSF46785 3 87 8.17E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03396 14eb4c1c28b1af21b98f22553fbd6993 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 2.2E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03396 14eb4c1c28b1af21b98f22553fbd6993 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 3.6E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03396 14eb4c1c28b1af21b98f22553fbd6993 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 3.6E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03396 14eb4c1c28b1af21b98f22553fbd6993 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 3.6E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03396 14eb4c1c28b1af21b98f22553fbd6993 291 Gene3D G3DSA:3.40.190.10 103 285 1.0E-64 T 12-10-2018 AMJ96_CH03396 14eb4c1c28b1af21b98f22553fbd6993 291 Pfam PF03466 LysR substrate binding domain 94 286 3.9E-37 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH03396 14eb4c1c28b1af21b98f22553fbd6993 291 Gene3D G3DSA:1.10.10.10 5 95 3.1E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03396 14eb4c1c28b1af21b98f22553fbd6993 291 SUPERFAMILY SSF53850 83 289 1.07E-35 T 12-10-2018 AMJ96_PC00180 7c963063ea1c4616efb7853f942b00f9 406 SUPERFAMILY SSF55486 51 385 2.12E-18 T 12-10-2018 AMJ96_CH02509 e5b1454a4cd5d35a7e36ebbd8a535791 338 Gene3D G3DSA:1.10.1610.10 20 326 1.2E-105 T 12-10-2018 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 AMJ96_CH02509 e5b1454a4cd5d35a7e36ebbd8a535791 338 Pfam PF02277 Phosphoribosyltransferase 20 334 1.7E-110 T 12-10-2018 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 AMJ96_CH02509 e5b1454a4cd5d35a7e36ebbd8a535791 338 SUPERFAMILY SSF52733 13 336 1.96E-111 T 12-10-2018 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 AMJ96_CH02509 e5b1454a4cd5d35a7e36ebbd8a535791 338 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 20 336 34.577 T 12-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 AMJ96_CH02509 e5b1454a4cd5d35a7e36ebbd8a535791 338 Gene3D G3DSA:3.40.50.10210 63 317 1.2E-105 T 12-10-2018 AMJ96_CH02509 e5b1454a4cd5d35a7e36ebbd8a535791 338 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 22 334 8.0E-114 T 12-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 AMJ96_PC00182 a946b076d20271f1a709fee429467a01 395 Gene3D G3DSA:1.10.490.140 160 262 1.9E-5 T 12-10-2018 AMJ96_PC00182 a946b076d20271f1a709fee429467a01 395 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 34 386 1.1E-32 T 12-10-2018 IPR003776 YcaO-like domain AMJ96_PC00182 a946b076d20271f1a709fee429467a01 395 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 80 386 9.1E-44 T 12-10-2018 IPR003776 YcaO-like domain AMJ96_CH03090 4758cfdd820503d9675d0401ba2c361f 221 ProSitePatterns PS00949 Autoinducer synthase family signature. 23 48 - T 12-10-2018 IPR018311 Autoinducer synthesis, conserved site KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AMJ96_CH03090 4758cfdd820503d9675d0401ba2c361f 221 SUPERFAMILY SSF55729 1 206 9.69E-36 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH03090 4758cfdd820503d9675d0401ba2c361f 221 Pfam PF00765 Autoinducer synthase 12 187 1.2E-32 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AMJ96_CH03090 4758cfdd820503d9675d0401ba2c361f 221 Gene3D G3DSA:3.40.630.30 3 200 2.7E-44 T 12-10-2018 AMJ96_CH03090 4758cfdd820503d9675d0401ba2c361f 221 PRINTS PR01549 Autoinducer synthesis protein signature 146 167 9.8E-12 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AMJ96_CH03090 4758cfdd820503d9675d0401ba2c361f 221 PRINTS PR01549 Autoinducer synthesis protein signature 39 61 9.8E-12 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AMJ96_CH03090 4758cfdd820503d9675d0401ba2c361f 221 PRINTS PR01549 Autoinducer synthesis protein signature 19 38 9.8E-12 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AMJ96_CH03090 4758cfdd820503d9675d0401ba2c361f 221 PRINTS PR01549 Autoinducer synthesis protein signature 97 109 9.8E-12 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AMJ96_CH03561 c03d56c1cbc842214d0dfbf8ee0dc8f6 282 Gene3D G3DSA:3.40.630.30 2 119 1.7E-13 T 12-10-2018 AMJ96_CH03561 c03d56c1cbc842214d0dfbf8ee0dc8f6 282 Pfam PF00583 Acetyltransferase (GNAT) family 32 118 6.7E-9 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH03561 c03d56c1cbc842214d0dfbf8ee0dc8f6 282 SUPERFAMILY SSF55729 5 262 2.28E-41 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH03561 c03d56c1cbc842214d0dfbf8ee0dc8f6 282 Gene3D G3DSA:3.40.630.90 122 282 1.5E-10 T 12-10-2018 AMJ96_CH00386 6159e72c0c5f5c9b8f27dfab59adaabc 233 Gene3D G3DSA:3.40.50.150 23 233 2.4E-51 T 12-10-2018 AMJ96_CH00386 6159e72c0c5f5c9b8f27dfab59adaabc 233 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 16 233 27.121 T 12-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 AMJ96_CH00386 6159e72c0c5f5c9b8f27dfab59adaabc 233 Pfam PF02390 Putative methyltransferase 61 224 2.1E-38 T 12-10-2018 AMJ96_CH00386 6159e72c0c5f5c9b8f27dfab59adaabc 233 SUPERFAMILY SSF53335 63 231 2.63E-28 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH00301 85ab05d3277d18c99498c4758d54b487 280 Gene3D G3DSA:3.40.50.720 5 280 1.9E-79 T 12-10-2018 AMJ96_CH00301 85ab05d3277d18c99498c4758d54b487 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 1.1E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00301 85ab05d3277d18c99498c4758d54b487 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 1.1E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00301 85ab05d3277d18c99498c4758d54b487 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 1.1E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00301 85ab05d3277d18c99498c4758d54b487 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.6E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00301 85ab05d3277d18c99498c4758d54b487 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 6.6E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00301 85ab05d3277d18c99498c4758d54b487 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 6.6E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00301 85ab05d3277d18c99498c4758d54b487 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 6.6E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00301 85ab05d3277d18c99498c4758d54b487 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 6.6E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH00301 85ab05d3277d18c99498c4758d54b487 280 SUPERFAMILY SSF51735 7 249 8.11E-62 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00301 85ab05d3277d18c99498c4758d54b487 280 Pfam PF00106 short chain dehydrogenase 9 190 1.1E-48 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02651 6c268765936b64c34bbdc6c72e1bee3d 392 Gene3D G3DSA:2.30.30.40 250 309 2.6E-5 T 12-10-2018 AMJ96_CH02651 6c268765936b64c34bbdc6c72e1bee3d 392 Gene3D G3DSA:3.90.226.10 36 205 9.4E-12 T 12-10-2018 AMJ96_CH02651 6c268765936b64c34bbdc6c72e1bee3d 392 SUPERFAMILY SSF52096 68 141 1.99E-9 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_CH00448 3ef31dac5804a82e97ed28d46692f111 179 SUPERFAMILY SSF88659 117 178 2.24E-12 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_CH00448 3ef31dac5804a82e97ed28d46692f111 179 Gene3D G3DSA:1.10.1740.10 5 89 6.8E-29 T 12-10-2018 AMJ96_CH00448 3ef31dac5804a82e97ed28d46692f111 179 Gene3D G3DSA:1.10.10.10 90 179 6.3E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00448 3ef31dac5804a82e97ed28d46692f111 179 SUPERFAMILY SSF88946 3 109 2.2E-23 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH00448 3ef31dac5804a82e97ed28d46692f111 179 Pfam PF08281 Sigma-70, region 4 121 173 1.6E-12 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_CH00448 3ef31dac5804a82e97ed28d46692f111 179 Pfam PF04542 Sigma-70 region 2 24 91 4.2E-15 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_CH00448 3ef31dac5804a82e97ed28d46692f111 179 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 20 177 9.5E-30 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMJ96_PB00214 974f230450f684ff5c739b23fdffd552 1565 Gene3D G3DSA:3.40.50.300 389 545 2.1E-54 T 12-10-2018 AMJ96_PB00214 974f230450f684ff5c739b23fdffd552 1565 Gene3D G3DSA:3.30.930.30 2 227 3.0E-61 T 12-10-2018 AMJ96_PB00214 974f230450f684ff5c739b23fdffd552 1565 Pfam PF13604 AAA domain 394 579 1.3E-53 T 12-10-2018 AMJ96_PB00214 974f230450f684ff5c739b23fdffd552 1565 SMART SM00382 408 543 0.0069 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PB00214 974f230450f684ff5c739b23fdffd552 1565 SUPERFAMILY SSF52540 289 562 7.23E-23 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PB00214 974f230450f684ff5c739b23fdffd552 1565 Pfam PF03389 MobA/MobL family 17 249 1.2E-75 T 12-10-2018 IPR005053 MobA/MobL protein AMJ96_PB00214 974f230450f684ff5c739b23fdffd552 1565 TIGRFAM TIGR02768 TraA_Ti: Ti-type conjugative transfer relaxase TraA 1 783 0.0 T 12-10-2018 IPR014136 Ti-type conjugative transfer relaxase TraA AMJ96_PB00214 974f230450f684ff5c739b23fdffd552 1565 SUPERFAMILY SSF52540 508 781 7.08E-34 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PB00214 974f230450f684ff5c739b23fdffd552 1565 Gene3D G3DSA:2.30.30.940 641 731 2.1E-54 T 12-10-2018 AMJ96_PB00214 974f230450f684ff5c739b23fdffd552 1565 Gene3D G3DSA:3.40.50.300 546 781 2.1E-54 T 12-10-2018 AMJ96_PD00203 e4cff535c0c280ab6e00f0674445a895 422 Gene3D G3DSA:3.60.21.10 3 245 5.2E-43 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like AMJ96_PD00203 e4cff535c0c280ab6e00f0674445a895 422 Pfam PF00149 Calcineurin-like phosphoesterase 4 102 1.5E-9 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMJ96_PD00203 e4cff535c0c280ab6e00f0674445a895 422 SUPERFAMILY SSF56300 4 301 6.49E-44 T 12-10-2018 AMJ96_PD00203 e4cff535c0c280ab6e00f0674445a895 422 PIRSF PIRSF033091 1 419 4.9E-101 T 12-10-2018 IPR014576 Predicted phosphoesterase, YhaO type AMJ96_CH00631 bf027ac528fb4fe42c62440404f65408 95 Pfam PF10048 Predicted integral membrane protein (DUF2282) 35 85 2.9E-25 T 12-10-2018 IPR018740 Protein of unknown function DUF2282, integral membrane AMJ96_CH02841 81f52468a544ac446bbd7a28340c8791 412 Pfam PF07690 Major Facilitator Superfamily 16 358 3.6E-22 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH02841 81f52468a544ac446bbd7a28340c8791 412 Gene3D G3DSA:1.20.1250.20 3 400 4.1E-29 T 12-10-2018 AMJ96_CH02841 81f52468a544ac446bbd7a28340c8791 412 SUPERFAMILY SSF103473 5 401 9.94E-35 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH00383 5e70e3b508628edb1b6ea52ed59a63a9 184 Pfam PF04191 Phospholipid methyltransferase 75 157 3.8E-13 T 12-10-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 AMJ96_CH00383 5e70e3b508628edb1b6ea52ed59a63a9 184 Gene3D G3DSA:1.20.120.1630 2 181 4.4E-23 T 12-10-2018 AMJ96_PC00236 e8283979ef7c4a26990f5ff6b203fc20 91 Pfam PF11154 Protein of unknown function (DUF2934) 5 39 7.9E-12 T 12-10-2018 IPR021327 Protein of unknown function DUF2934 AMJ96_CH00529 c22fc53c57c04476b25730f4af7e1486 237 Gene3D G3DSA:1.20.58.220 118 225 4.6E-33 T 12-10-2018 IPR038078 PhoU-like domain superfamily AMJ96_CH00529 c22fc53c57c04476b25730f4af7e1486 237 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 9 218 7.6E-70 T 12-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 AMJ96_CH00529 c22fc53c57c04476b25730f4af7e1486 237 PIRSF PIRSF003107 3 223 2.7E-59 T 12-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 AMJ96_CH00529 c22fc53c57c04476b25730f4af7e1486 237 Gene3D G3DSA:1.20.58.220 1 117 8.5E-35 T 12-10-2018 IPR038078 PhoU-like domain superfamily AMJ96_CH00529 c22fc53c57c04476b25730f4af7e1486 237 Pfam PF01895 PhoU domain 21 109 2.7E-21 T 12-10-2018 IPR026022 PhoU domain AMJ96_CH00529 c22fc53c57c04476b25730f4af7e1486 237 Pfam PF01895 PhoU domain 125 209 1.2E-17 T 12-10-2018 IPR026022 PhoU domain AMJ96_CH00529 c22fc53c57c04476b25730f4af7e1486 237 SUPERFAMILY SSF109755 8 227 9.21E-68 T 12-10-2018 AMJ96_CH00010 3f345ff6b8128d0c8b87ca36a0689411 189 SUPERFAMILY SSF160443 96 181 3.92E-16 T 12-10-2018 IPR036063 Smr domain superfamily AMJ96_CH00010 3f345ff6b8128d0c8b87ca36a0689411 189 SMART SM00463 96 182 2.9E-4 T 12-10-2018 IPR002625 Smr domain AMJ96_CH00010 3f345ff6b8128d0c8b87ca36a0689411 189 Gene3D G3DSA:3.30.1370.110 49 188 4.6E-33 T 12-10-2018 AMJ96_CH00010 3f345ff6b8128d0c8b87ca36a0689411 189 Pfam PF01713 Smr domain 99 181 5.8E-20 T 12-10-2018 IPR002625 Smr domain AMJ96_CH03617 18059447d633072a705e5d361ce15832 487 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 79 104 1.1E-17 T 12-10-2018 AMJ96_CH03617 18059447d633072a705e5d361ce15832 487 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 243 269 1.1E-17 T 12-10-2018 AMJ96_CH03617 18059447d633072a705e5d361ce15832 487 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 420 439 1.1E-17 T 12-10-2018 AMJ96_CH03617 18059447d633072a705e5d361ce15832 487 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 221 242 1.1E-17 T 12-10-2018 AMJ96_CH03617 18059447d633072a705e5d361ce15832 487 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 72 118 1.7E-8 T 12-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03617 18059447d633072a705e5d361ce15832 487 Pfam PF00361 Proton-conducting membrane transporter 132 425 5.0E-51 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH02900 4d10643ad29dc6ae475ba26e75ef68e3 522 Pfam PF07995 Glucose / Sorbosone dehydrogenase 188 365 9.9E-14 T 12-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase AMJ96_CH02900 4d10643ad29dc6ae475ba26e75ef68e3 522 Gene3D G3DSA:2.120.10.30 165 438 6.8E-17 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMJ96_CH02900 4d10643ad29dc6ae475ba26e75ef68e3 522 SUPERFAMILY SSF50952 65 445 1.12E-36 T 12-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AMJ96_CH04240 720c3d48a2b4a029b36cc63cc551871e 355 Gene3D G3DSA:1.10.3720.10 109 350 2.0E-24 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH04240 720c3d48a2b4a029b36cc63cc551871e 355 SUPERFAMILY SSF161098 113 336 2.62E-16 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH04240 720c3d48a2b4a029b36cc63cc551871e 355 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 132 353 4.6E-43 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00029 3f7a9ba57ca0502555010e8f6731ad75 503 PIRSF PIRSF036599 1 503 4.8E-235 T 12-10-2018 IPR012180 Predicted bifunctional ATPase/phosphotransferase AMJ96_CH00029 3f7a9ba57ca0502555010e8f6731ad75 503 Gene3D G3DSA:3.30.200.20 153 257 1.1E-21 T 12-10-2018 AMJ96_CH00029 3f7a9ba57ca0502555010e8f6731ad75 503 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 11 143 4.6E-32 T 12-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 AMJ96_CH00029 3f7a9ba57ca0502555010e8f6731ad75 503 SUPERFAMILY SSF56112 156 492 1.2E-42 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily AMJ96_CH00029 3f7a9ba57ca0502555010e8f6731ad75 503 Gene3D G3DSA:3.40.50.300 5 152 9.8E-37 T 12-10-2018 AMJ96_CH00029 3f7a9ba57ca0502555010e8f6731ad75 503 SUPERFAMILY SSF52540 17 115 7.31E-17 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00029 3f7a9ba57ca0502555010e8f6731ad75 503 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 12 135 1.0E-32 T 12-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 AMJ96_CH00029 3f7a9ba57ca0502555010e8f6731ad75 503 Pfam PF01636 Phosphotransferase enzyme family 170 422 1.6E-25 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase AMJ96_CH00029 3f7a9ba57ca0502555010e8f6731ad75 503 Gene3D G3DSA:3.90.1200.10 258 501 1.7E-60 T 12-10-2018 AMJ96_CH03806 d099d9062c051b906744880302119248 295 SUPERFAMILY SSF53448 7 278 6.31E-60 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03806 d099d9062c051b906744880302119248 295 Gene3D G3DSA:3.90.550.10 1 291 3.5E-79 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03806 d099d9062c051b906744880302119248 295 Pfam PF00483 Nucleotidyl transferase 14 272 5.7E-22 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AMJ96_CH03806 d099d9062c051b906744880302119248 295 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 7 267 9.9E-103 T 12-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 AMJ96_CH01584 158cac5a167856dac55ef990e6f856f6 393 Pfam PF00480 ROK family 87 377 1.4E-47 T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AMJ96_CH01584 158cac5a167856dac55ef990e6f856f6 393 SUPERFAMILY SSF53067 85 382 1.71E-50 T 12-10-2018 AMJ96_CH01584 158cac5a167856dac55ef990e6f856f6 393 SUPERFAMILY SSF46785 13 76 2.79E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01584 158cac5a167856dac55ef990e6f856f6 393 Gene3D G3DSA:3.30.420.40 89 372 3.1E-67 T 12-10-2018 AMJ96_CH01584 158cac5a167856dac55ef990e6f856f6 393 Pfam PF13412 Winged helix-turn-helix DNA-binding 22 61 2.3E-7 T 12-10-2018 AMJ96_CH01584 158cac5a167856dac55ef990e6f856f6 393 Gene3D G3DSA:1.10.10.10 3 81 6.6E-16 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01584 158cac5a167856dac55ef990e6f856f6 393 Gene3D G3DSA:3.30.420.40 208 367 3.1E-67 T 12-10-2018 AMJ96_CH03560 3cae22e44593bf58e1f863f9d284137c 305 Pfam PF00892 EamA-like transporter family 154 286 1.6E-19 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH03560 3cae22e44593bf58e1f863f9d284137c 305 Pfam PF00892 EamA-like transporter family 5 137 2.0E-17 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH03560 3cae22e44593bf58e1f863f9d284137c 305 SUPERFAMILY SSF103481 40 141 2.48E-10 T 12-10-2018 AMJ96_CH03560 3cae22e44593bf58e1f863f9d284137c 305 SUPERFAMILY SSF103481 193 291 9.42E-12 T 12-10-2018 AMJ96_CH02004 305ea5ba1bc0a71234ebfa6cd5b511cd 448 Gene3D G3DSA:4.10.320.10 133 179 5.6E-18 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AMJ96_CH02004 305ea5ba1bc0a71234ebfa6cd5b511cd 448 Pfam PF00364 Biotin-requiring enzyme 4 77 1.5E-21 T 12-10-2018 IPR000089 Biotin/lipoyl attachment AMJ96_CH02004 305ea5ba1bc0a71234ebfa6cd5b511cd 448 SUPERFAMILY SSF47005 131 176 8.5E-13 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AMJ96_CH02004 305ea5ba1bc0a71234ebfa6cd5b511cd 448 SUPERFAMILY SSF51230 1 96 5.89E-29 T 12-10-2018 IPR011053 Single hybrid motif AMJ96_CH02004 305ea5ba1bc0a71234ebfa6cd5b511cd 448 Pfam PF02817 e3 binding domain 138 172 7.9E-16 T 12-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 AMJ96_CH02004 305ea5ba1bc0a71234ebfa6cd5b511cd 448 Gene3D G3DSA:3.30.559.10 194 445 3.2E-89 T 12-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AMJ96_CH02004 305ea5ba1bc0a71234ebfa6cd5b511cd 448 TIGRFAM TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 4 448 5.9E-177 T 12-10-2018 IPR006257 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex GO:0004742|GO:0006090|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-70268 AMJ96_CH02004 305ea5ba1bc0a71234ebfa6cd5b511cd 448 SUPERFAMILY SSF52777 216 447 1.65E-79 T 12-10-2018 AMJ96_CH02004 305ea5ba1bc0a71234ebfa6cd5b511cd 448 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 217 447 2.0E-80 T 12-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 AMJ96_CH02004 305ea5ba1bc0a71234ebfa6cd5b511cd 448 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMJ96_CH02004 305ea5ba1bc0a71234ebfa6cd5b511cd 448 Gene3D G3DSA:2.40.50.100 3 103 1.0E-32 T 12-10-2018 AMJ96_CH02524 65e13ab06173a68c79d6fc76c90a1dc1 368 SUPERFAMILY SSF52540 12 250 1.64E-82 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02524 65e13ab06173a68c79d6fc76c90a1dc1 368 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH02524 65e13ab06173a68c79d6fc76c90a1dc1 368 Gene3D G3DSA:3.40.50.300 10 223 1.6E-62 T 12-10-2018 AMJ96_CH02524 65e13ab06173a68c79d6fc76c90a1dc1 368 Gene3D G3DSA:2.40.50.140 296 352 1.8E-31 T 12-10-2018 AMJ96_CH02524 65e13ab06173a68c79d6fc76c90a1dc1 368 Pfam PF08402 TOBE domain 289 360 2.4E-9 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_CH02524 65e13ab06173a68c79d6fc76c90a1dc1 368 Gene3D G3DSA:2.40.50.940 226 361 1.8E-31 T 12-10-2018 AMJ96_CH02524 65e13ab06173a68c79d6fc76c90a1dc1 368 Pfam PF00005 ABC transporter 27 169 3.8E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02524 65e13ab06173a68c79d6fc76c90a1dc1 368 SMART SM00382 36 227 1.3E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02524 65e13ab06173a68c79d6fc76c90a1dc1 368 SUPERFAMILY SSF50331 244 368 3.64E-26 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH00117 2e5a80dd891291723a92f9dd7f22158c 310 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 252 309 2.7E-7 T 12-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH00117 2e5a80dd891291723a92f9dd7f22158c 310 SUPERFAMILY SSF55120 11 225 2.73E-72 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH00117 2e5a80dd891291723a92f9dd7f22158c 310 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 12 309 17.998 T 12-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH00117 2e5a80dd891291723a92f9dd7f22158c 310 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 34 182 3.5E-50 T 12-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 AMJ96_CH00117 2e5a80dd891291723a92f9dd7f22158c 310 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 183 243 1.6E-12 T 12-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 AMJ96_CH00117 2e5a80dd891291723a92f9dd7f22158c 310 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 13 221 5.3E-64 T 12-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AMJ96_CH00117 2e5a80dd891291723a92f9dd7f22158c 310 Gene3D G3DSA:3.30.2350.10 2 247 3.7E-79 T 12-10-2018 AMJ96_CH01520 00af06c2f615c9e192d2e85c822c434a 151 Pfam PF02391 MoaE protein 7 118 8.5E-29 T 12-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 AMJ96_CH01520 00af06c2f615c9e192d2e85c822c434a 151 Gene3D G3DSA:3.90.1170.40 2 150 2.1E-42 T 12-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 AMJ96_CH01520 00af06c2f615c9e192d2e85c822c434a 151 SUPERFAMILY SSF54690 3 150 9.94E-44 T 12-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 AMJ96_CH04307 ac2cb9292ba1524f5afb3d8e6b9a546e 340 SUPERFAMILY SSF53850 35 328 3.36E-73 T 12-10-2018 AMJ96_CH04307 ac2cb9292ba1524f5afb3d8e6b9a546e 340 Pfam PF13343 Bacterial extracellular solute-binding protein 83 308 6.9E-33 T 12-10-2018 AMJ96_CH04307 ac2cb9292ba1524f5afb3d8e6b9a546e 340 Gene3D G3DSA:3.40.190.10 130 318 4.5E-105 T 12-10-2018 AMJ96_CH04307 ac2cb9292ba1524f5afb3d8e6b9a546e 340 PIRSF PIRSF002825 3 340 6.2E-79 T 12-10-2018 IPR026045 Ferric binding protein AMJ96_CH04307 ac2cb9292ba1524f5afb3d8e6b9a546e 340 Gene3D G3DSA:3.40.190.10 37 310 4.5E-105 T 12-10-2018 AMJ96_CH02032 6ccc10912e9a6a956c081aa05311fa04 397 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 296 309 7.6E-13 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_CH02032 6ccc10912e9a6a956c081aa05311fa04 397 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 37 53 7.6E-13 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_CH02032 6ccc10912e9a6a956c081aa05311fa04 397 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 59 75 7.6E-13 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_CH02032 6ccc10912e9a6a956c081aa05311fa04 397 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 100 110 7.6E-13 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AMJ96_CH02032 6ccc10912e9a6a956c081aa05311fa04 397 Gene3D G3DSA:3.40.50.2300 44 364 1.2E-91 T 12-10-2018 AMJ96_CH02032 6ccc10912e9a6a956c081aa05311fa04 397 Gene3D G3DSA:3.40.50.2300 160 290 1.2E-91 T 12-10-2018 AMJ96_CH02032 6ccc10912e9a6a956c081aa05311fa04 397 SUPERFAMILY SSF53822 36 385 3.36E-96 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH02032 6ccc10912e9a6a956c081aa05311fa04 397 Pfam PF13458 Periplasmic binding protein 36 381 4.5E-75 T 12-10-2018 IPR028081 Leucine-binding protein domain AMJ96_CH03898 352b44356d02c775abbf1dd80b534441 334 Pfam PF02653 Branched-chain amino acid transport system / permease component 48 324 5.0E-41 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_PD00008 c68f6698ccc7a7e565ddeb99d6ccddcf 136 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 4 131 10.312 T 12-10-2018 IPR022907 VapC family GO:0004540 AMJ96_PD00008 c68f6698ccc7a7e565ddeb99d6ccddcf 136 Gene3D G3DSA:3.40.50.1010 1 133 6.5E-35 T 12-10-2018 AMJ96_PD00008 c68f6698ccc7a7e565ddeb99d6ccddcf 136 Pfam PF01850 PIN domain 5 124 4.5E-15 T 12-10-2018 IPR002716 PIN domain AMJ96_PD00008 c68f6698ccc7a7e565ddeb99d6ccddcf 136 SUPERFAMILY SSF88723 4 133 1.26E-32 T 12-10-2018 IPR029060 PIN-like domain superfamily AMJ96_CH03655 9aeaea3bda13e56dd877ad64d2c410e6 595 Gene3D G3DSA:2.30.40.10 24 368 1.1E-117 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH03655 9aeaea3bda13e56dd877ad64d2c410e6 595 SUPERFAMILY SSF51556 86 336 2.54E-19 T 12-10-2018 IPR032466 Metal-dependent hydrolase AMJ96_CH03655 9aeaea3bda13e56dd877ad64d2c410e6 595 Pfam PF13382 Adenine deaminase C-terminal domain 418 583 9.5E-39 T 12-10-2018 IPR026912 Adenine deaminase C-terminal domain KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 AMJ96_CH03655 9aeaea3bda13e56dd877ad64d2c410e6 595 Gene3D G3DSA:3.20.20.140 86 331 1.1E-117 T 12-10-2018 AMJ96_CH03655 9aeaea3bda13e56dd877ad64d2c410e6 595 Hamap MF_01518 Adenine deaminase [ade]. 32 588 31.231 T 12-10-2018 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 AMJ96_CH03655 9aeaea3bda13e56dd877ad64d2c410e6 595 SUPERFAMILY SSF51338 22 370 4.16E-17 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 AMJ96_CH03655 9aeaea3bda13e56dd877ad64d2c410e6 595 Pfam PF01979 Amidohydrolase family 82 367 9.9E-21 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 AMJ96_PA00217 325c1f959f47bbfb15f088ca2c64adcc 257 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 29 250 1.3E-60 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PA00217 325c1f959f47bbfb15f088ca2c64adcc 257 Gene3D G3DSA:3.40.190.10 110 209 5.6E-68 T 12-10-2018 AMJ96_PA00217 325c1f959f47bbfb15f088ca2c64adcc 257 SMART SM00062 23 252 3.2E-60 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_PA00217 325c1f959f47bbfb15f088ca2c64adcc 257 Gene3D G3DSA:3.40.190.10 29 248 5.6E-68 T 12-10-2018 AMJ96_PA00217 325c1f959f47bbfb15f088ca2c64adcc 257 SUPERFAMILY SSF53850 1 253 7.24E-62 T 12-10-2018 AMJ96_CH04015 9a2e70a2c6feeb7da29529a30dbcf4c9 542 Gene3D G3DSA:3.40.50.12780 16 437 4.9E-111 T 12-10-2018 AMJ96_CH04015 9a2e70a2c6feeb7da29529a30dbcf4c9 542 ProSitePatterns PS00455 Putative AMP-binding domain signature. 190 201 - T 12-10-2018 IPR020845 AMP-binding, conserved site AMJ96_CH04015 9a2e70a2c6feeb7da29529a30dbcf4c9 542 Gene3D G3DSA:3.30.300.30 438 542 3.6E-29 T 12-10-2018 AMJ96_CH04015 9a2e70a2c6feeb7da29529a30dbcf4c9 542 Pfam PF00501 AMP-binding enzyme 33 440 3.0E-82 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMJ96_CH04015 9a2e70a2c6feeb7da29529a30dbcf4c9 542 Pfam PF13193 AMP-binding enzyme C-terminal domain 450 528 5.7E-20 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain AMJ96_CH04015 9a2e70a2c6feeb7da29529a30dbcf4c9 542 SUPERFAMILY SSF56801 11 539 4.06E-145 T 12-10-2018 AMJ96_CH01113 97cc15775241b8dc2c205bc5f0b4cb4a 284 SUPERFAMILY SSF53474 10 282 4.28E-33 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01113 97cc15775241b8dc2c205bc5f0b4cb4a 284 Pfam PF01738 Dienelactone hydrolase family 66 281 5.6E-14 T 12-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 AMJ96_CH01113 97cc15775241b8dc2c205bc5f0b4cb4a 284 Gene3D G3DSA:3.40.50.1820 55 283 3.2E-43 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH00440 d996631c3ed3a4de326513c8181df026 209 Gene3D G3DSA:1.10.238.10 155 206 7.8E-9 T 12-10-2018 AMJ96_CH00440 d996631c3ed3a4de326513c8181df026 209 Gene3D G3DSA:1.10.238.10 49 111 1.0E-10 T 12-10-2018 AMJ96_CH00440 d996631c3ed3a4de326513c8181df026 209 ProSitePatterns PS00018 EF-hand calcium-binding domain. 84 96 - T 12-10-2018 IPR018247 EF-Hand 1, calcium-binding site AMJ96_CH00440 d996631c3ed3a4de326513c8181df026 209 Pfam PF13202 EF hand 55 71 2.1E-5 T 12-10-2018 IPR002048 EF-hand domain GO:0005509 AMJ96_CH00440 d996631c3ed3a4de326513c8181df026 209 Pfam PF13202 EF hand 183 201 0.0027 T 12-10-2018 IPR002048 EF-hand domain GO:0005509 AMJ96_CH00440 d996631c3ed3a4de326513c8181df026 209 Pfam PF13202 EF hand 76 97 0.0011 T 12-10-2018 IPR002048 EF-hand domain GO:0005509 AMJ96_CH00440 d996631c3ed3a4de326513c8181df026 209 Pfam PF13202 EF hand 163 178 0.03 T 12-10-2018 IPR002048 EF-hand domain GO:0005509 AMJ96_CH00440 d996631c3ed3a4de326513c8181df026 209 SMART SM00054 158 186 0.32 T 12-10-2018 IPR002048 EF-hand domain GO:0005509 AMJ96_CH00440 d996631c3ed3a4de326513c8181df026 209 SMART SM00054 51 79 0.73 T 12-10-2018 IPR002048 EF-hand domain GO:0005509 AMJ96_CH00440 d996631c3ed3a4de326513c8181df026 209 SUPERFAMILY SSF47473 53 203 7.08E-18 T 12-10-2018 IPR011992 EF-hand domain pair AMJ96_PB00297 642b4e950cc94a848b835c9b760338ab 179 SUPERFAMILY SSF52833 22 175 3.08E-36 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_PB00297 642b4e950cc94a848b835c9b760338ab 179 Pfam PF08534 Redoxin 32 144 6.3E-26 T 12-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 AMJ96_PB00297 642b4e950cc94a848b835c9b760338ab 179 Gene3D G3DSA:3.40.30.10 2 175 1.7E-61 T 12-10-2018 AMJ96_CH00916 4b21fd78c1278f23d5931335d1b283a0 319 Gene3D G3DSA:1.10.357.140 44 197 7.4E-43 T 12-10-2018 AMJ96_CH00916 4b21fd78c1278f23d5931335d1b283a0 319 Gene3D G3DSA:1.20.120.1780 198 318 4.3E-13 T 12-10-2018 AMJ96_CH00916 4b21fd78c1278f23d5931335d1b283a0 319 Pfam PF01040 UbiA prenyltransferase family 47 296 7.7E-54 T 12-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 AMJ96_CH00916 4b21fd78c1278f23d5931335d1b283a0 319 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 23 315 27.149 T 12-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 AMJ96_CH00916 4b21fd78c1278f23d5931335d1b283a0 319 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 94 116 - T 12-10-2018 IPR030470 UbiA prenyltransferase conserved site AMJ96_CH00916 4b21fd78c1278f23d5931335d1b283a0 319 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 28 314 9.8E-112 T 12-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 AMJ96_PD00475 3aa2b3632ac9b7bf3a44b59ae13cd776 164 SMART SM00344 11 120 3.3E-49 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMJ96_PD00475 3aa2b3632ac9b7bf3a44b59ae13cd776 164 Gene3D G3DSA:1.10.10.10 3 64 2.1E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00475 3aa2b3632ac9b7bf3a44b59ae13cd776 164 Gene3D G3DSA:3.30.70.920 65 147 1.0E-24 T 12-10-2018 AMJ96_PD00475 3aa2b3632ac9b7bf3a44b59ae13cd776 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 38 57 9.3E-15 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_PD00475 3aa2b3632ac9b7bf3a44b59ae13cd776 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 11 27 9.3E-15 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_PD00475 3aa2b3632ac9b7bf3a44b59ae13cd776 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 27 38 9.3E-15 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_PD00475 3aa2b3632ac9b7bf3a44b59ae13cd776 164 SUPERFAMILY SSF54909 71 155 2.68E-21 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_PD00475 3aa2b3632ac9b7bf3a44b59ae13cd776 164 SUPERFAMILY SSF46785 11 69 2.53E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00475 3aa2b3632ac9b7bf3a44b59ae13cd776 164 Pfam PF13412 Winged helix-turn-helix DNA-binding 11 58 5.2E-17 T 12-10-2018 AMJ96_PD00475 3aa2b3632ac9b7bf3a44b59ae13cd776 164 Pfam PF01037 Lrp/AsnC ligand binding domain 77 151 1.6E-22 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMJ96_CH01765 c0e0e6eea1a88fc2ecf53813dc91e4e9 419 Gene3D G3DSA:3.40.190.10 144 397 1.9E-145 T 12-10-2018 AMJ96_CH01765 c0e0e6eea1a88fc2ecf53813dc91e4e9 419 SUPERFAMILY SSF53850 27 417 4.84E-53 T 12-10-2018 AMJ96_CH01765 c0e0e6eea1a88fc2ecf53813dc91e4e9 419 Pfam PF01547 Bacterial extracellular solute-binding protein 60 285 1.5E-21 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH01765 c0e0e6eea1a88fc2ecf53813dc91e4e9 419 Gene3D G3DSA:3.40.190.10 29 375 1.9E-145 T 12-10-2018 AMJ96_PC00342 eff1e38dc978f695d47aa768640a6809 264 Gene3D G3DSA:3.20.20.60 7 263 3.3E-65 T 12-10-2018 AMJ96_PC00342 eff1e38dc978f695d47aa768640a6809 264 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 23 243 8.5E-27 T 12-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 AMJ96_PC00342 eff1e38dc978f695d47aa768640a6809 264 SUPERFAMILY SSF51621 20 258 4.71E-59 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMJ96_CH01509 9c1c9732bea788d71597deee98d0c9ac 308 SUPERFAMILY SSF51735 3 170 2.28E-38 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01509 9c1c9732bea788d71597deee98d0c9ac 308 Gene3D G3DSA:3.30.360.10 117 308 1.7E-87 T 12-10-2018 AMJ96_CH01509 9c1c9732bea788d71597deee98d0c9ac 308 Gene3D G3DSA:3.40.50.720 1 116 2.5E-43 T 12-10-2018 AMJ96_CH01509 9c1c9732bea788d71597deee98d0c9ac 308 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 113 2.6E-17 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_CH01665 09fd3471c29bc9bc83ef4fef28257736 457 Gene3D G3DSA:3.30.70.270 289 456 8.4E-61 T 12-10-2018 AMJ96_CH01665 09fd3471c29bc9bc83ef4fef28257736 457 SUPERFAMILY SSF52172 157 289 4.55E-25 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH01665 09fd3471c29bc9bc83ef4fef28257736 457 Gene3D G3DSA:3.40.50.12740 1 288 1.1E-89 T 12-10-2018 AMJ96_CH01665 09fd3471c29bc9bc83ef4fef28257736 457 Pfam PF00990 Diguanylate cyclase, GGDEF domain 292 451 1.6E-50 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01665 09fd3471c29bc9bc83ef4fef28257736 457 SUPERFAMILY SSF55073 297 453 1.41E-52 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH01665 09fd3471c29bc9bc83ef4fef28257736 457 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 291 455 9.2E-57 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01665 09fd3471c29bc9bc83ef4fef28257736 457 SUPERFAMILY SSF52172 2 134 1.39E-41 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH01665 09fd3471c29bc9bc83ef4fef28257736 457 SMART SM00267 281 455 4.7E-68 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01665 09fd3471c29bc9bc83ef4fef28257736 457 SMART SM00448 156 268 1.7E-10 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01665 09fd3471c29bc9bc83ef4fef28257736 457 SMART SM00448 3 116 2.3E-43 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01665 09fd3471c29bc9bc83ef4fef28257736 457 Pfam PF00072 Response regulator receiver domain 5 116 6.9E-30 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01665 09fd3471c29bc9bc83ef4fef28257736 457 Pfam PF00072 Response regulator receiver domain 158 267 6.2E-14 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03592 6e0bd7338f47b514c80c3c85d0b41705 294 Gene3D G3DSA:1.10.3720.10 48 293 7.5E-65 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03592 6e0bd7338f47b514c80c3c85d0b41705 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 289 2.0E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03592 6e0bd7338f47b514c80c3c85d0b41705 294 SUPERFAMILY SSF161098 52 278 3.4E-57 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00045 85a59e2ab1630899d1c8618a2755be2b 208 Gene3D G3DSA:3.40.50.10490 38 199 4.9E-48 T 12-10-2018 AMJ96_PA00045 85a59e2ab1630899d1c8618a2755be2b 208 SUPERFAMILY SSF53697 46 196 4.25E-33 T 12-10-2018 AMJ96_PA00045 85a59e2ab1630899d1c8618a2755be2b 208 Pfam PF13580 SIS domain 45 159 7.4E-16 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMJ96_CH04330 3b99cda8fd163e7b510be7f7e664877d 147 Pfam PF02410 Ribosomal silencing factor during starvation 41 136 6.1E-27 T 12-10-2018 AMJ96_CH04330 3b99cda8fd163e7b510be7f7e664877d 147 Gene3D G3DSA:3.30.460.10 34 147 3.6E-37 T 12-10-2018 AMJ96_CH04330 3b99cda8fd163e7b510be7f7e664877d 147 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 40 136 4.0E-35 T 12-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AMJ96_CH04330 3b99cda8fd163e7b510be7f7e664877d 147 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 27 137 24.947 T 12-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AMJ96_CH04330 3b99cda8fd163e7b510be7f7e664877d 147 SUPERFAMILY SSF81301 38 139 2.29E-36 T 12-10-2018 AMJ96_CH01781 fc3403756ec663f7ef9888a6b90bd753 283 SUPERFAMILY SSF53335 40 225 8.9E-33 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH01781 fc3403756ec663f7ef9888a6b90bd753 283 Gene3D G3DSA:3.40.50.150 26 272 4.7E-34 T 12-10-2018 AMJ96_CH01781 fc3403756ec663f7ef9888a6b90bd753 283 Pfam PF13649 Methyltransferase domain 58 151 2.5E-18 T 12-10-2018 AMJ96_CH03522 ac0537e3dacc70a61d1d6de3fa2375be 135 Gene3D G3DSA:1.20.1270.180 18 135 2.4E-27 T 12-10-2018 AMJ96_CH03522 ac0537e3dacc70a61d1d6de3fa2375be 135 Pfam PF07007 Lysozyme inhibitor LprI 27 126 9.1E-21 T 12-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal AMJ96_CH03432 eb75c67f194d9ed9f6a169a7d620a4c9 235 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 165 228 1.9E-4 T 12-10-2018 IPR010221 VCBS repeat AMJ96_CH03432 eb75c67f194d9ed9f6a169a7d620a4c9 235 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 51 126 1.4E-6 T 12-10-2018 IPR010221 VCBS repeat AMJ96_PD00320 2659a32b283e96fdc5528d4b8e6b8dd8 190 Pfam PF03358 NADPH-dependent FMN reductase 5 147 7.7E-33 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMJ96_PD00320 2659a32b283e96fdc5528d4b8e6b8dd8 190 Gene3D G3DSA:3.40.50.360 3 184 1.2E-46 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_PD00320 2659a32b283e96fdc5528d4b8e6b8dd8 190 SUPERFAMILY SSF52218 5 175 7.54E-45 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_CH02552 82efc6600c6eabf6a0d4ff9fd824277e 279 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 15 252 7.8E-86 T 12-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMJ96_CH02552 82efc6600c6eabf6a0d4ff9fd824277e 279 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 17 228 5.8E-42 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 AMJ96_CH02552 82efc6600c6eabf6a0d4ff9fd824277e 279 SUPERFAMILY SSF53790 12 258 2.75E-72 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 AMJ96_CH02552 82efc6600c6eabf6a0d4ff9fd824277e 279 Gene3D G3DSA:3.40.1010.10 1 130 5.6E-41 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 AMJ96_CH02552 82efc6600c6eabf6a0d4ff9fd824277e 279 Gene3D G3DSA:3.30.950.10 131 276 8.2E-44 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 AMJ96_CH02552 82efc6600c6eabf6a0d4ff9fd824277e 279 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 95 128 - T 12-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 AMJ96_CH00838 84e657cfabd9169916c349760599f0a1 165 Gene3D G3DSA:2.60.120.380 34 139 7.9E-7 T 12-10-2018 AMJ96_CH02817 bad5343bc701b4d8247f00d1c15fa045 309 Pfam PF13602 Zinc-binding dehydrogenase 192 307 1.1E-10 T 12-10-2018 AMJ96_CH02817 bad5343bc701b4d8247f00d1c15fa045 309 SMART SM00829 10 307 1.9E-13 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_CH02817 bad5343bc701b4d8247f00d1c15fa045 309 Gene3D G3DSA:3.40.50.720 128 258 3.1E-72 T 12-10-2018 AMJ96_CH02817 bad5343bc701b4d8247f00d1c15fa045 309 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 89 8.2E-7 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_CH02817 bad5343bc701b4d8247f00d1c15fa045 309 SUPERFAMILY SSF51735 117 279 9.7E-27 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02817 bad5343bc701b4d8247f00d1c15fa045 309 Gene3D G3DSA:3.90.180.10 8 306 3.1E-72 T 12-10-2018 AMJ96_CH02817 bad5343bc701b4d8247f00d1c15fa045 309 SUPERFAMILY SSF50129 1 150 7.91E-36 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_PA00148 ae1678d4559de327c201884c20075b70 94 Pfam PF10006 Uncharacterized conserved protein (DUF2249) 13 82 3.2E-29 T 12-10-2018 IPR018720 Domain of unknown function DUF2249 AMJ96_CH03883 5f00034be28b41ec80d0b3e1d6d85b51 213 PIRSF PIRSF008159 1 213 7.2E-77 T 12-10-2018 IPR016537 Uncharacterised conserved protein UCP008159, AMJ96_CH03883 5f00034be28b41ec80d0b3e1d6d85b51 213 Pfam PF06226 Protein of unknown function (DUF1007) 8 213 1.2E-57 T 12-10-2018 IPR010412 Protein of unknown function DUF1007 AMJ96_CH01884 503976c7212de9d7ccfe9e4698a0fdaa 290 Gene3D G3DSA:3.40.50.300 52 197 3.0E-8 T 12-10-2018 AMJ96_CH01884 503976c7212de9d7ccfe9e4698a0fdaa 290 Pfam PF05673 Protein of unknown function (DUF815) 36 282 4.0E-105 T 12-10-2018 IPR008533 Domain of unknown function DUF815 AMJ96_CH01884 503976c7212de9d7ccfe9e4698a0fdaa 290 SUPERFAMILY SSF52540 43 196 3.67E-19 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00062 557b7b50421be467ca0d2c9ad1f826e7 349 Pfam PF00005 ABC transporter 41 206 1.4E-22 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00062 557b7b50421be467ca0d2c9ad1f826e7 349 SUPERFAMILY SSF52540 20 278 1.25E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00062 557b7b50421be467ca0d2c9ad1f826e7 349 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 258 322 2.8E-18 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_PA00062 557b7b50421be467ca0d2c9ad1f826e7 349 ProSitePatterns PS00211 ABC transporters family signature. 179 193 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PA00062 557b7b50421be467ca0d2c9ad1f826e7 349 Gene3D G3DSA:3.40.50.300 18 349 7.6E-90 T 12-10-2018 AMJ96_PA00062 557b7b50421be467ca0d2c9ad1f826e7 349 SMART SM00382 49 256 1.2E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00062 557b7b50421be467ca0d2c9ad1f826e7 349 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 256 343 4.6E-24 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AMJ96_CH01525 a18b9ab437aa462d2a326b4caeefd5d7 211 SUPERFAMILY SSF56925 46 211 2.88E-27 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMJ96_CH01525 a18b9ab437aa462d2a326b4caeefd5d7 211 Pfam PF13505 Outer membrane protein beta-barrel domain 11 211 2.2E-26 T 12-10-2018 IPR027385 Outer membrane protein beta-barrel AMJ96_CH01525 a18b9ab437aa462d2a326b4caeefd5d7 211 Gene3D G3DSA:2.40.160.20 46 211 4.6E-19 T 12-10-2018 AMJ96_PC00069 4d884162ef3f79f58e337cd9c5dfcb26 134 Gene3D G3DSA:1.20.1290.10 8 132 6.8E-38 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_PC00069 4d884162ef3f79f58e337cd9c5dfcb26 134 Pfam PF02627 Carboxymuconolactone decarboxylase family 41 122 4.4E-22 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AMJ96_PC00069 4d884162ef3f79f58e337cd9c5dfcb26 134 TIGRFAM TIGR02425 decarb_PcaC: 4-carboxymuconolactone decarboxylase 8 128 4.7E-61 T 12-10-2018 IPR012788 4-carboxymuconolactone decarboxylase KEGG: 00362+4.1.1.44 AMJ96_PC00069 4d884162ef3f79f58e337cd9c5dfcb26 134 SUPERFAMILY SSF69118 9 127 7.07E-35 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_CH00141 7b5e2f1a9b7fefd5711f19bfb8ccb05c 330 Gene3D G3DSA:3.40.1190.20 2 330 4.3E-97 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_CH00141 7b5e2f1a9b7fefd5711f19bfb8ccb05c 330 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 272 285 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMJ96_CH00141 7b5e2f1a9b7fefd5711f19bfb8ccb05c 330 Pfam PF00294 pfkB family carbohydrate kinase 56 315 2.1E-47 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB AMJ96_CH00141 7b5e2f1a9b7fefd5711f19bfb8ccb05c 330 SUPERFAMILY SSF53613 1 316 1.03E-79 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_CH01178 6676803301ae58a547478dd73e007ed5 80 Gene3D G3DSA:1.10.8.1250 11 80 4.2E-8 T 12-10-2018 IPR038296 Antitoxin ParD superfamily AMJ96_CH01178 6676803301ae58a547478dd73e007ed5 80 SUPERFAMILY SSF47598 1 43 1.33E-8 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMJ96_CH01178 6676803301ae58a547478dd73e007ed5 80 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 6 59 5.9E-6 T 12-10-2018 IPR022789 Antitoxin ParD AMJ96_PD00399 05461abc9793c10c10ca46e69ec7c6c8 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 302 2.5E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00399 05461abc9793c10c10ca46e69ec7c6c8 308 Gene3D G3DSA:1.10.3720.10 64 305 1.4E-69 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00399 05461abc9793c10c10ca46e69ec7c6c8 308 SUPERFAMILY SSF161098 68 295 1.44E-59 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00811 55429118a91576631bc3d2e566b9cc30 340 Gene3D G3DSA:1.10.10.10 11 89 3.8E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00811 55429118a91576631bc3d2e566b9cc30 340 Pfam PF00891 O-methyltransferase 137 325 7.0E-15 T 12-10-2018 IPR001077 O-methyltransferase, family 2 GO:0008171 AMJ96_CH00811 55429118a91576631bc3d2e566b9cc30 340 Gene3D G3DSA:3.40.50.150 132 339 1.4E-48 T 12-10-2018 AMJ96_CH00811 55429118a91576631bc3d2e566b9cc30 340 PIRSF PIRSF005739 13 340 5.9E-9 T 12-10-2018 IPR016461 O-methyltransferase COMT-type GO:0008168 AMJ96_CH00811 55429118a91576631bc3d2e566b9cc30 340 SUPERFAMILY SSF46785 17 96 9.8E-10 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00811 55429118a91576631bc3d2e566b9cc30 340 Pfam PF16864 Dimerisation domain 23 98 1.1E-6 T 12-10-2018 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain AMJ96_CH00811 55429118a91576631bc3d2e566b9cc30 340 SUPERFAMILY SSF53335 111 337 6.14E-37 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH01068 d060885a55d1c90d74bab6b5bae8e80a 69 SUPERFAMILY SSF46894 5 68 5.44E-19 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH01068 d060885a55d1c90d74bab6b5bae8e80a 69 ProSitePatterns PS00622 LuxR-type HTH domain signature. 22 49 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH01068 d060885a55d1c90d74bab6b5bae8e80a 69 SMART SM00421 5 62 1.8E-17 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH01068 d060885a55d1c90d74bab6b5bae8e80a 69 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 38 50 2.6E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH01068 d060885a55d1c90d74bab6b5bae8e80a 69 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 22 38 2.6E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH01068 d060885a55d1c90d74bab6b5bae8e80a 69 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 8 22 2.6E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH01068 d060885a55d1c90d74bab6b5bae8e80a 69 Gene3D G3DSA:1.10.10.10 2 69 2.8E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01068 d060885a55d1c90d74bab6b5bae8e80a 69 Pfam PF00196 Bacterial regulatory proteins, luxR family 9 60 1.2E-17 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH02073 079f90f29cd796810702fcc353497f40 497 Gene3D G3DSA:3.50.50.60 6 338 4.6E-101 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02073 079f90f29cd796810702fcc353497f40 497 Gene3D G3DSA:3.40.30.120 387 497 4.0E-26 T 12-10-2018 AMJ96_CH02073 079f90f29cd796810702fcc353497f40 497 SUPERFAMILY SSF51905 5 355 2.54E-61 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02073 079f90f29cd796810702fcc353497f40 497 Pfam PF01494 FAD binding domain 5 340 3.3E-78 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 AMJ96_CH02073 079f90f29cd796810702fcc353497f40 497 Gene3D G3DSA:3.30.70.2450 173 264 4.6E-101 T 12-10-2018 AMJ96_CH02073 079f90f29cd796810702fcc353497f40 497 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 308 326 4.1E-46 T 12-10-2018 AMJ96_CH02073 079f90f29cd796810702fcc353497f40 497 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 290 306 4.1E-46 T 12-10-2018 AMJ96_CH02073 079f90f29cd796810702fcc353497f40 497 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 144 159 4.1E-46 T 12-10-2018 AMJ96_CH02073 079f90f29cd796810702fcc353497f40 497 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 275 290 4.1E-46 T 12-10-2018 AMJ96_CH02073 079f90f29cd796810702fcc353497f40 497 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 4.1E-46 T 12-10-2018 AMJ96_CH02073 079f90f29cd796810702fcc353497f40 497 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 326 342 4.1E-46 T 12-10-2018 AMJ96_CH01613 6b138e788e9c58aaffabad103ad520bf 125 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 117 3.9E-9 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH01613 6b138e788e9c58aaffabad103ad520bf 125 SUPERFAMILY SSF54593 6 120 4.03E-19 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01613 6b138e788e9c58aaffabad103ad520bf 125 Gene3D G3DSA:3.10.180.10 3 125 1.0E-18 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH03595 0cea0b8a7bad719bd35f28fccf9c1fce 309 SUPERFAMILY SSF53613 2 294 6.08E-51 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_CH03595 0cea0b8a7bad719bd35f28fccf9c1fce 309 Gene3D G3DSA:3.40.1190.20 4 294 5.0E-55 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_CH03595 0cea0b8a7bad719bd35f28fccf9c1fce 309 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 254 267 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMJ96_CH03595 0cea0b8a7bad719bd35f28fccf9c1fce 309 Pfam PF00294 pfkB family carbohydrate kinase 3 292 9.0E-33 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB AMJ96_CH02252 98be5b6731aa43d636a3a4e78579d7b9 381 Pfam PF10098 Uncharacterised protein conserved in bacteria (DUF2336) 91 372 5.6E-67 T 12-10-2018 IPR019285 Protein of unknown function DUF2336 AMJ96_CH02252 98be5b6731aa43d636a3a4e78579d7b9 381 PIRSF PIRSF035865 2 381 8.0E-123 T 12-10-2018 IPR014598 Uncharacterised conserved protein UCP035865 AMJ96_PB00347 ede16a96d3d1e7823b21e4690474e1e5 138 Pfam PF13586 Transposase DDE domain 52 136 2.7E-21 T 12-10-2018 IPR025668 Transposase DDE domain AMJ96_PB00347 ede16a96d3d1e7823b21e4690474e1e5 138 SUPERFAMILY SSF53098 16 134 1.52E-5 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_PA00051 95f9e14e22b297d009e9b3f1ca18441d 427 Gene3D G3DSA:3.40.190.10 45 362 1.9E-60 T 12-10-2018 AMJ96_PA00051 95f9e14e22b297d009e9b3f1ca18441d 427 Gene3D G3DSA:3.40.190.10 142 375 1.9E-60 T 12-10-2018 AMJ96_PA00051 95f9e14e22b297d009e9b3f1ca18441d 427 SUPERFAMILY SSF53850 26 382 5.43E-51 T 12-10-2018 AMJ96_PA00051 95f9e14e22b297d009e9b3f1ca18441d 427 Pfam PF01547 Bacterial extracellular solute-binding protein 39 332 1.3E-26 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH00550 6a8937a2983584b6a14bcc641b01363c 236 Gene3D G3DSA:2.40.50.90 119 236 5.2E-9 T 12-10-2018 IPR035437 SNase-like, OB-fold superfamily AMJ96_CH00550 6a8937a2983584b6a14bcc641b01363c 236 SUPERFAMILY SSF50199 128 232 4.18E-13 T 12-10-2018 AMJ96_PD00461 e7846a495e0aaccbc32bac62ee08f65d 440 Gene3D G3DSA:3.50.50.60 376 417 1.1E-20 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00461 e7846a495e0aaccbc32bac62ee08f65d 440 Gene3D G3DSA:3.30.9.10 98 263 1.1E-54 T 12-10-2018 AMJ96_PD00461 e7846a495e0aaccbc32bac62ee08f65d 440 SUPERFAMILY SSF51905 18 429 4.01E-55 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00461 e7846a495e0aaccbc32bac62ee08f65d 440 Gene3D G3DSA:3.50.50.60 19 233 1.1E-54 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00461 e7846a495e0aaccbc32bac62ee08f65d 440 Gene3D G3DSA:3.30.9.10 332 375 1.1E-20 T 12-10-2018 AMJ96_PD00461 e7846a495e0aaccbc32bac62ee08f65d 440 Pfam PF01266 FAD dependent oxidoreductase 19 411 7.3E-62 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_PD00145 220c3a5302eb15183c5bdbe851cfae8e 377 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 171 199 - T 12-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AMJ96_PD00145 220c3a5302eb15183c5bdbe851cfae8e 377 Gene3D G3DSA:3.40.50.1970 5 182 1.7E-37 T 12-10-2018 AMJ96_PD00145 220c3a5302eb15183c5bdbe851cfae8e 377 Pfam PF00465 Iron-containing alcohol dehydrogenase 13 369 3.1E-95 T 12-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AMJ96_PD00145 220c3a5302eb15183c5bdbe851cfae8e 377 Gene3D G3DSA:1.20.1090.10 183 377 1.0E-57 T 12-10-2018 AMJ96_PD00145 220c3a5302eb15183c5bdbe851cfae8e 377 SUPERFAMILY SSF56796 10 376 1.14E-99 T 12-10-2018 AMJ96_PD00367 ee3a177ca1a18c45e421766b9a07be9e 346 Gene3D G3DSA:1.10.3470.10 11 346 4.1E-96 T 12-10-2018 IPR037294 ABC transporter, BtuC-like AMJ96_PD00367 ee3a177ca1a18c45e421766b9a07be9e 346 Pfam PF01032 FecCD transport family 24 341 2.8E-91 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 AMJ96_PD00367 ee3a177ca1a18c45e421766b9a07be9e 346 SUPERFAMILY SSF81345 13 341 1.44E-76 T 12-10-2018 IPR037294 ABC transporter, BtuC-like AMJ96_CH00166 7e9777e0700fd81a20c3b5bac8123f97 301 Gene3D G3DSA:3.40.190.10 115 236 1.5E-52 T 12-10-2018 AMJ96_CH00166 7e9777e0700fd81a20c3b5bac8123f97 301 TIGRFAM TIGR03431 PhnD: phosphonate ABC transporter, periplasmic phosphonate binding protein 1 298 1.6E-88 T 12-10-2018 IPR017797 Phosphonate ABC transporter, substrate-binding protein GO:0015716|GO:0043190 AMJ96_CH00166 7e9777e0700fd81a20c3b5bac8123f97 301 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 6 260 4.7E-77 T 12-10-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 AMJ96_CH00166 7e9777e0700fd81a20c3b5bac8123f97 301 Gene3D G3DSA:3.40.190.10 29 263 1.5E-52 T 12-10-2018 AMJ96_CH00166 7e9777e0700fd81a20c3b5bac8123f97 301 SUPERFAMILY SSF53850 26 296 6.58E-51 T 12-10-2018 AMJ96_CH00166 7e9777e0700fd81a20c3b5bac8123f97 301 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 29 288 4.5E-60 T 12-10-2018 AMJ96_CH02770 77e5b72dcf763846de6960111dadd4c6 432 Gene3D G3DSA:2.40.50.100 168 335 1.4E-45 T 12-10-2018 AMJ96_CH02770 77e5b72dcf763846de6960111dadd4c6 432 Gene3D G3DSA:2.40.30.170 157 411 1.4E-45 T 12-10-2018 AMJ96_CH02770 77e5b72dcf763846de6960111dadd4c6 432 SUPERFAMILY SSF111369 161 411 1.96E-18 T 12-10-2018 AMJ96_CH02770 77e5b72dcf763846de6960111dadd4c6 432 Gene3D G3DSA:1.10.287.470 202 293 1.4E-45 T 12-10-2018 AMJ96_CH02770 77e5b72dcf763846de6960111dadd4c6 432 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 168 404 3.9E-19 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMJ96_CH02770 77e5b72dcf763846de6960111dadd4c6 432 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 153 415 1.2E-33 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMJ96_CH04371 029f23573069c2e32c7b3ba3e30d3d81 219 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 2 219 5.2E-50 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 AMJ96_CH04371 029f23573069c2e32c7b3ba3e30d3d81 219 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 5 218 26.25 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 AMJ96_CH04371 029f23573069c2e32c7b3ba3e30d3d81 219 PIRSF PIRSF004848 1 219 1.0E-60 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 AMJ96_CH04371 029f23573069c2e32c7b3ba3e30d3d81 219 SUPERFAMILY SSF51419 1 217 2.94E-69 T 12-10-2018 IPR029066 PLP-binding barrel AMJ96_CH04371 029f23573069c2e32c7b3ba3e30d3d81 219 Gene3D G3DSA:3.20.20.10 1 219 9.1E-77 T 12-10-2018 IPR029066 PLP-binding barrel AMJ96_CH04371 029f23573069c2e32c7b3ba3e30d3d81 219 Pfam PF01168 Alanine racemase, N-terminal domain 18 219 4.3E-21 T 12-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AMJ96_CH03941 31ce435287a63f61f77460fe1ab71a97 319 Pfam PF00480 ROK family 17 310 2.7E-46 T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AMJ96_CH03941 31ce435287a63f61f77460fe1ab71a97 319 Gene3D G3DSA:3.30.420.40 19 308 2.9E-69 T 12-10-2018 AMJ96_CH03941 31ce435287a63f61f77460fe1ab71a97 319 SUPERFAMILY SSF53067 15 313 5.19E-48 T 12-10-2018 AMJ96_CH03941 31ce435287a63f61f77460fe1ab71a97 319 Gene3D G3DSA:3.30.420.40 130 301 2.9E-69 T 12-10-2018 AMJ96_CH00011 9b42061178413b0dc6e1d3ea11bab7f8 125 Pfam PF13560 Helix-turn-helix domain 4 58 4.8E-13 T 12-10-2018 AMJ96_CH00011 9b42061178413b0dc6e1d3ea11bab7f8 125 Gene3D G3DSA:1.10.260.40 2 67 1.4E-15 T 12-10-2018 AMJ96_CH00011 9b42061178413b0dc6e1d3ea11bab7f8 125 SUPERFAMILY SSF47413 2 58 3.22E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH00011 9b42061178413b0dc6e1d3ea11bab7f8 125 SMART SM00530 7 63 9.2E-13 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH04107 51894552d20da25da6a24b785f5dbcf0 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.1E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH04107 51894552d20da25da6a24b785f5dbcf0 297 Gene3D G3DSA:3.40.190.290 90 294 3.9E-38 T 12-10-2018 AMJ96_CH04107 51894552d20da25da6a24b785f5dbcf0 297 Gene3D G3DSA:1.10.10.10 1 84 1.9E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH04107 51894552d20da25da6a24b785f5dbcf0 297 SUPERFAMILY SSF46785 3 103 1.34E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH04107 51894552d20da25da6a24b785f5dbcf0 297 Pfam PF03466 LysR substrate binding domain 86 288 7.3E-31 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH04107 51894552d20da25da6a24b785f5dbcf0 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 38 5.3E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH04107 51894552d20da25da6a24b785f5dbcf0 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 49 5.3E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH04107 51894552d20da25da6a24b785f5dbcf0 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 17 28 5.3E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH04107 51894552d20da25da6a24b785f5dbcf0 297 SUPERFAMILY SSF53850 87 290 8.47E-34 T 12-10-2018 AMJ96_CH01964 7e1a646a461684bb2b6a834b46c614ab 81 Pfam PF10276 Zinc-finger domain 24 58 1.1E-10 T 12-10-2018 IPR019401 Zinc finger, CHCC-type Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01964 7e1a646a461684bb2b6a834b46c614ab 81 Gene3D G3DSA:2.60.260.40 1 81 4.0E-41 T 12-10-2018 AMJ96_CH03139 df729df2526e32b0616954f66ef575a6 324 SUPERFAMILY SSF51905 1 313 2.09E-55 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03139 df729df2526e32b0616954f66ef575a6 324 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 302 4.6E-50 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_CH03139 df729df2526e32b0616954f66ef575a6 324 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 239 255 5.9E-40 T 12-10-2018 AMJ96_CH03139 df729df2526e32b0616954f66ef575a6 324 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 5.9E-40 T 12-10-2018 AMJ96_CH03139 df729df2526e32b0616954f66ef575a6 324 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 5.9E-40 T 12-10-2018 AMJ96_CH03139 df729df2526e32b0616954f66ef575a6 324 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 5.9E-40 T 12-10-2018 AMJ96_CH03139 df729df2526e32b0616954f66ef575a6 324 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 5.9E-40 T 12-10-2018 AMJ96_CH03139 df729df2526e32b0616954f66ef575a6 324 Gene3D G3DSA:3.50.50.60 118 247 5.6E-123 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03139 df729df2526e32b0616954f66ef575a6 324 Gene3D G3DSA:3.50.50.60 8 307 5.6E-123 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03139 df729df2526e32b0616954f66ef575a6 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 1.1E-75 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_CH03139 df729df2526e32b0616954f66ef575a6 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 1.1E-75 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_CH03139 df729df2526e32b0616954f66ef575a6 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 196 212 1.1E-75 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_CH03139 df729df2526e32b0616954f66ef575a6 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 1.1E-75 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_CH03139 df729df2526e32b0616954f66ef575a6 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 241 262 1.1E-75 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_CH03139 df729df2526e32b0616954f66ef575a6 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 40 55 1.1E-75 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_CH03139 df729df2526e32b0616954f66ef575a6 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 1.1E-75 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_CH03139 df729df2526e32b0616954f66ef575a6 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 61 71 1.1E-75 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_CH03139 df729df2526e32b0616954f66ef575a6 324 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 1.1E-75 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AMJ96_CH03139 df729df2526e32b0616954f66ef575a6 324 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 7 313 4.3E-122 T 12-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 AMJ96_CH03139 df729df2526e32b0616954f66ef575a6 324 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 12-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 AMJ96_CH00004 e0eb581f6679d801ddfa1d993812aef4 203 SUPERFAMILY SSF52540 1 190 4.96E-35 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00004 e0eb581f6679d801ddfa1d993812aef4 203 Pfam PF01121 Dephospho-CoA kinase 4 178 1.8E-37 T 12-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AMJ96_CH00004 e0eb581f6679d801ddfa1d993812aef4 203 Gene3D G3DSA:3.40.50.300 1 201 7.2E-55 T 12-10-2018 AMJ96_CH00004 e0eb581f6679d801ddfa1d993812aef4 203 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 185 7.4E-36 T 12-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AMJ96_CH00004 e0eb581f6679d801ddfa1d993812aef4 203 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 194 24.968 T 12-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AMJ96_CH01190 cd7c1da4a36af915fcf01f2045875f0c 333 Pfam PF00005 ABC transporter 42 185 1.6E-22 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH01190 cd7c1da4a36af915fcf01f2045875f0c 333 SMART SM00382 50 234 1.1E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH01190 cd7c1da4a36af915fcf01f2045875f0c 333 SUPERFAMILY SSF52540 32 254 7.48E-50 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01190 cd7c1da4a36af915fcf01f2045875f0c 333 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH01190 cd7c1da4a36af915fcf01f2045875f0c 333 Gene3D G3DSA:3.40.50.300 29 258 2.2E-49 T 12-10-2018 AMJ96_CH00078 68538b1516d2d57ee3611d9d35d111d7 336 SUPERFAMILY SSF52283 24 120 1.38E-9 T 12-10-2018 AMJ96_CH00078 68538b1516d2d57ee3611d9d35d111d7 336 SUPERFAMILY SSF51735 109 297 2.01E-43 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00078 68538b1516d2d57ee3611d9d35d111d7 336 Gene3D G3DSA:3.40.50.720 108 295 4.8E-96 T 12-10-2018 AMJ96_CH00078 68538b1516d2d57ee3611d9d35d111d7 336 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 146 296 1.6E-46 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMJ96_CH00078 68538b1516d2d57ee3611d9d35d111d7 336 Gene3D G3DSA:3.40.50.720 9 317 4.8E-96 T 12-10-2018 AMJ96_CH00078 68538b1516d2d57ee3611d9d35d111d7 336 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 39 324 1.4E-5 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 AMJ96_CH03654 ee62fe6c8676ef09ae6e9024d867d8c0 306 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 3 291 7.4E-60 T 12-10-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AMJ96_CH03654 ee62fe6c8676ef09ae6e9024d867d8c0 306 SUPERFAMILY SSF53590 2 300 2.22E-68 T 12-10-2018 IPR036452 Ribonucleoside hydrolase-like AMJ96_CH03654 ee62fe6c8676ef09ae6e9024d867d8c0 306 Gene3D G3DSA:3.90.245.10 2 304 3.1E-73 T 12-10-2018 IPR036452 Ribonucleoside hydrolase-like AMJ96_CH00499 a140fd9fcc329e49b2028109258a3438 817 Gene3D G3DSA:2.60.40.10 189 291 1.3E-13 T 12-10-2018 IPR013783 Immunoglobulin-like fold AMJ96_CH00499 a140fd9fcc329e49b2028109258a3438 817 Gene3D G3DSA:3.20.20.80 292 632 5.7E-109 T 12-10-2018 AMJ96_CH00499 a140fd9fcc329e49b2028109258a3438 817 SUPERFAMILY SSF49303 194 292 9.21E-16 T 12-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily AMJ96_CH00499 a140fd9fcc329e49b2028109258a3438 817 Gene3D G3DSA:2.60.120.260 1 188 2.5E-59 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily AMJ96_CH00499 a140fd9fcc329e49b2028109258a3438 817 Pfam PF00703 Glycosyl hydrolases family 2 232 292 3.3E-9 T 12-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 AMJ96_CH00499 a140fd9fcc329e49b2028109258a3438 817 SUPERFAMILY SSF49785 4 188 1.23E-51 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily AMJ96_CH00499 a140fd9fcc329e49b2028109258a3438 817 SUPERFAMILY SSF51445 290 634 1.58E-96 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_PD00387 adbf115994eaf1d3d18150df79697327 383 Gene3D G3DSA:3.30.420.40 261 381 5.7E-6 T 12-10-2018 AMJ96_PD00387 adbf115994eaf1d3d18150df79697327 383 Gene3D G3DSA:3.30.420.40 216 252 3.6E-27 T 12-10-2018 AMJ96_PD00387 adbf115994eaf1d3d18150df79697327 383 Pfam PF01047 MarR family 25 78 1.4E-5 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_PD00387 adbf115994eaf1d3d18150df79697327 383 SUPERFAMILY SSF46785 24 83 3.56E-7 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00387 adbf115994eaf1d3d18150df79697327 383 SUPERFAMILY SSF53067 96 378 1.05E-29 T 12-10-2018 AMJ96_PD00387 adbf115994eaf1d3d18150df79697327 383 Gene3D G3DSA:3.30.420.40 113 215 3.6E-27 T 12-10-2018 AMJ96_PD00387 adbf115994eaf1d3d18150df79697327 383 Pfam PF00480 ROK family 134 251 1.7E-13 T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AMJ96_PD00387 adbf115994eaf1d3d18150df79697327 383 Gene3D G3DSA:1.10.10.10 15 89 6.0E-8 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01376 7c6f68069506c2a5c42f3476df5af6c5 288 Gene3D G3DSA:1.10.10.10 5 86 2.0E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01376 7c6f68069506c2a5c42f3476df5af6c5 288 SUPERFAMILY SSF46785 5 106 3.89E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01376 7c6f68069506c2a5c42f3476df5af6c5 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 1.6E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01376 7c6f68069506c2a5c42f3476df5af6c5 288 SUPERFAMILY SSF53850 96 277 4.71E-9 T 12-10-2018 AMJ96_PD00038 1f1fd7493c8bdc10e82b74fee9c6fd18 516 SMART SM00382 291 484 8.8E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00038 1f1fd7493c8bdc10e82b74fee9c6fd18 516 SMART SM00382 37 226 4.1E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00038 1f1fd7493c8bdc10e82b74fee9c6fd18 516 Pfam PF00005 ABC transporter 283 436 3.2E-22 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00038 1f1fd7493c8bdc10e82b74fee9c6fd18 516 Gene3D G3DSA:3.40.50.300 264 510 2.2E-47 T 12-10-2018 AMJ96_PD00038 1f1fd7493c8bdc10e82b74fee9c6fd18 516 SUPERFAMILY SSF52540 267 498 2.31E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00038 1f1fd7493c8bdc10e82b74fee9c6fd18 516 Gene3D G3DSA:3.40.50.300 1 244 2.2E-56 T 12-10-2018 AMJ96_PD00038 1f1fd7493c8bdc10e82b74fee9c6fd18 516 ProSitePatterns PS00211 ABC transporters family signature. 409 423 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00038 1f1fd7493c8bdc10e82b74fee9c6fd18 516 SUPERFAMILY SSF52540 11 233 8.09E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00038 1f1fd7493c8bdc10e82b74fee9c6fd18 516 Pfam PF00005 ABC transporter 29 178 9.3E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH03666 afb13a793e960de9626adf6109986368 327 Gene3D G3DSA:3.40.190.150 28 320 1.2E-100 T 12-10-2018 AMJ96_CH03666 afb13a793e960de9626adf6109986368 327 PIRSF PIRSF017082 1 326 7.7E-69 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMJ96_CH03666 afb13a793e960de9626adf6109986368 327 Gene3D G3DSA:3.40.190.10 126 249 1.2E-100 T 12-10-2018 AMJ96_CH03666 afb13a793e960de9626adf6109986368 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 322 4.1E-72 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 AMJ96_CH03666 afb13a793e960de9626adf6109986368 327 SUPERFAMILY SSF53850 115 282 1.3E-9 T 12-10-2018 AMJ96_PC00086 ae75ca7c2f1fd55d89380e18575c8400 511 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 2 503 45.074 T 12-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_PC00086 ae75ca7c2f1fd55d89380e18575c8400 511 Gene3D G3DSA:1.10.275.10 1 196 2.4E-61 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal AMJ96_PC00086 ae75ca7c2f1fd55d89380e18575c8400 511 SUPERFAMILY SSF48557 2 501 2.2E-182 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMJ96_PC00086 ae75ca7c2f1fd55d89380e18575c8400 511 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 138 154 - T 12-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 AMJ96_PC00086 ae75ca7c2f1fd55d89380e18575c8400 511 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 3 505 1.4E-217 T 12-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AMJ96_PC00086 ae75ca7c2f1fd55d89380e18575c8400 511 Pfam PF00221 Aromatic amino acid lyase 13 470 3.0E-177 T 12-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 AMJ96_PC00086 ae75ca7c2f1fd55d89380e18575c8400 511 Gene3D G3DSA:1.20.200.10 197 508 1.0E-110 T 12-10-2018 AMJ96_CH01013 e5792997230118164ca586cfd68a9b56 121 SUPERFAMILY SSF54427 5 115 8.01E-20 T 12-10-2018 IPR032710 NTF2-like domain superfamily AMJ96_CH01013 e5792997230118164ca586cfd68a9b56 121 Pfam PF12680 SnoaL-like domain 9 112 9.8E-14 T 12-10-2018 IPR037401 SnoaL-like domain AMJ96_CH01013 e5792997230118164ca586cfd68a9b56 121 Gene3D G3DSA:3.10.450.50 6 120 4.5E-19 T 12-10-2018 AMJ96_CH01681 2a46a8e98f1a661dabb0b9c795a328d2 339 SUPERFAMILY SSF53474 24 309 6.73E-28 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01681 2a46a8e98f1a661dabb0b9c795a328d2 339 PIRSF PIRSF031982 12 334 1.0E-59 T 12-10-2018 IPR016986 Uncharacterised conserved protein UCP031982, alpha/beta hydrolase, XabL AMJ96_CH03729 58b51c2acd416cb9fa0f5f7eb1d3a718 160 SUPERFAMILY SSF55961 5 137 1.07E-21 T 12-10-2018 AMJ96_CH03729 58b51c2acd416cb9fa0f5f7eb1d3a718 160 Gene3D G3DSA:3.30.530.20 4 147 8.7E-24 T 12-10-2018 IPR023393 START-like domain superfamily AMJ96_CH03729 58b51c2acd416cb9fa0f5f7eb1d3a718 160 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 14 136 3.4E-13 T 12-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like AMJ96_PD00328 97ed34960b3fd11654c219d781d5920b 276 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 167 3.2E-18 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_PD00328 97ed34960b3fd11654c219d781d5920b 276 Gene3D G3DSA:3.40.50.720 1 226 2.6E-51 T 12-10-2018 AMJ96_PD00328 97ed34960b3fd11654c219d781d5920b 276 SUPERFAMILY SSF51735 1 225 2.71E-38 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01791 c62c8642491100783bbb711aad5e2c79 166 SMART SM00344 5 114 1.8E-32 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMJ96_CH01791 c62c8642491100783bbb711aad5e2c79 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 32 2.3E-13 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH01791 c62c8642491100783bbb711aad5e2c79 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 21 2.3E-13 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH01791 c62c8642491100783bbb711aad5e2c79 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 51 2.3E-13 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH01791 c62c8642491100783bbb711aad5e2c79 166 Pfam PF01037 Lrp/AsnC ligand binding domain 71 145 5.2E-20 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMJ96_CH01791 c62c8642491100783bbb711aad5e2c79 166 Pfam PF13412 Winged helix-turn-helix DNA-binding 5 52 1.9E-15 T 12-10-2018 AMJ96_CH01791 c62c8642491100783bbb711aad5e2c79 166 SUPERFAMILY SSF54909 65 153 4.69E-18 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH01791 c62c8642491100783bbb711aad5e2c79 166 Gene3D G3DSA:1.10.10.10 6 54 8.6E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01791 c62c8642491100783bbb711aad5e2c79 166 SUPERFAMILY SSF46785 4 95 6.15E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01791 c62c8642491100783bbb711aad5e2c79 166 Gene3D G3DSA:3.30.70.920 55 152 1.3E-23 T 12-10-2018 AMJ96_PB00070 d0cbba76ab8f648e70e767709fdac570 128 ProDom PD080544 SYNTHASE 4.2.1.- LYASE L-ECTOINE DEHYDRATASE N-ACETYLDIAMINOBUTYRATE ECTOINE ENZYME SYNTHASE:ECTOINE ECTC 1 128 2.0E-58 T 12-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 AMJ96_PB00070 d0cbba76ab8f648e70e767709fdac570 128 SUPERFAMILY SSF51182 10 114 3.15E-20 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_PB00070 d0cbba76ab8f648e70e767709fdac570 128 Pfam PF06339 Ectoine synthase 1 122 2.9E-44 T 12-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 AMJ96_PB00070 d0cbba76ab8f648e70e767709fdac570 128 Gene3D G3DSA:2.60.120.10 1 116 1.6E-40 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PB00070 d0cbba76ab8f648e70e767709fdac570 128 Hamap MF_01255 L-ectoine synthase [ectC]. 1 128 33.453 T 12-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 AMJ96_CH02454 f5cd4fe2fa8f600d89f903540d693e17 378 Pfam PF01497 Periplasmic binding protein 100 318 4.9E-22 T 12-10-2018 IPR002491 ABC transporter periplasmic binding domain AMJ96_CH02454 f5cd4fe2fa8f600d89f903540d693e17 378 SUPERFAMILY SSF53807 28 345 8.24E-49 T 12-10-2018 AMJ96_CH02454 f5cd4fe2fa8f600d89f903540d693e17 378 Gene3D G3DSA:3.40.50.1980 27 375 2.1E-97 T 12-10-2018 AMJ96_CH02294 995a22ff954a10ca0f3d7df472c50e58 261 Pfam PF07542 ATP12 chaperone protein 31 148 6.7E-37 T 12-10-2018 IPR011419 ATP12, ATP synthase F1-assembly protein GO:0043461 AMJ96_CH02294 995a22ff954a10ca0f3d7df472c50e58 261 Gene3D G3DSA:1.10.3580.10 90 260 4.4E-62 T 12-10-2018 IPR023335 ATP12 orthogonal Bundle domain superfamily AMJ96_CH02294 995a22ff954a10ca0f3d7df472c50e58 261 SUPERFAMILY SSF160909 2 257 3.14E-90 T 12-10-2018 AMJ96_CH02294 995a22ff954a10ca0f3d7df472c50e58 261 Gene3D G3DSA:3.30.2180.30 23 89 2.3E-24 T 12-10-2018 AMJ96_CH01607 86f11337b9e4e438cc5a7db395518e62 142 Pfam PF13380 CoA binding domain 19 137 1.2E-37 T 12-10-2018 IPR003781 CoA-binding GO:0048037 AMJ96_CH01607 86f11337b9e4e438cc5a7db395518e62 142 SMART SM00881 15 111 2.9E-19 T 12-10-2018 IPR003781 CoA-binding GO:0048037 AMJ96_CH01607 86f11337b9e4e438cc5a7db395518e62 142 Gene3D G3DSA:3.40.50.720 7 142 3.7E-38 T 12-10-2018 AMJ96_CH01607 86f11337b9e4e438cc5a7db395518e62 142 SUPERFAMILY SSF51735 7 140 2.61E-40 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00134 0618846b21a570aeb6d2f52164092db6 409 SUPERFAMILY SSF53850 37 408 9.88E-62 T 12-10-2018 AMJ96_PC00134 0618846b21a570aeb6d2f52164092db6 409 Pfam PF13416 Bacterial extracellular solute-binding protein 49 342 8.0E-35 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PC00134 0618846b21a570aeb6d2f52164092db6 409 Gene3D G3DSA:3.40.190.10 25 409 1.1E-63 T 12-10-2018 AMJ96_PB00418 37d1f60850c678fd1674479ea6caa86b 248 Pfam PF01526 Tn3 transposase DDE domain 98 162 4.0E-8 T 12-10-2018 IPR002513 Tn3 transposase DDE domain GO:0004803|GO:0006313 AMJ96_PC00414 1a7b0dfc63a47c744cbfc12f720eb3c2 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 248 7.8E-62 T 12-10-2018 AMJ96_PC00414 1a7b0dfc63a47c744cbfc12f720eb3c2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.8E-44 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00414 1a7b0dfc63a47c744cbfc12f720eb3c2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.8E-44 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00414 1a7b0dfc63a47c744cbfc12f720eb3c2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.8E-44 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00414 1a7b0dfc63a47c744cbfc12f720eb3c2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.8E-44 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00414 1a7b0dfc63a47c744cbfc12f720eb3c2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.8E-44 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00414 1a7b0dfc63a47c744cbfc12f720eb3c2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.8E-44 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00414 1a7b0dfc63a47c744cbfc12f720eb3c2 251 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 5 251 1.0E-120 T 12-10-2018 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.127|MetaCyc: PWY-6507|MetaCyc: PWY-7562 AMJ96_PC00414 1a7b0dfc63a47c744cbfc12f720eb3c2 251 Gene3D G3DSA:3.40.50.720 2 251 3.0E-81 T 12-10-2018 AMJ96_PC00414 1a7b0dfc63a47c744cbfc12f720eb3c2 251 SUPERFAMILY SSF51735 5 250 1.04E-81 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00414 1a7b0dfc63a47c744cbfc12f720eb3c2 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_PC00414 1a7b0dfc63a47c744cbfc12f720eb3c2 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 2.4E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00414 1a7b0dfc63a47c744cbfc12f720eb3c2 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 2.4E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00414 1a7b0dfc63a47c744cbfc12f720eb3c2 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 2.4E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PA00104 25616c48715f2992a4e906c7da78b508 240 SUPERFAMILY SSF89562 15 193 1.44E-35 T 12-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily AMJ96_PA00104 25616c48715f2992a4e906c7da78b508 240 Gene3D G3DSA:3.50.30.100 1 204 1.4E-47 T 12-10-2018 AMJ96_PA00104 25616c48715f2992a4e906c7da78b508 240 Pfam PF03737 Aldolase/RraA 28 181 8.1E-31 T 12-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AMJ96_CH04101 47fd86c840cf3cd6a6d1b4977330a316 552 Pfam PF07690 Major Facilitator Superfamily 41 439 4.4E-38 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH04101 47fd86c840cf3cd6a6d1b4977330a316 552 SUPERFAMILY SSF103473 26 489 1.03E-43 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH04101 47fd86c840cf3cd6a6d1b4977330a316 552 Gene3D G3DSA:1.20.1250.20 26 485 5.0E-35 T 12-10-2018 AMJ96_CH00335 2a8dc776081ea6978fbaa5f06ececa63 122 Hamap MF_00048 UPF0102 protein YraN [yraN]. 13 122 20.223 T 12-10-2018 IPR003509 Uncharacterised protein family UPF0102 AMJ96_CH00335 2a8dc776081ea6978fbaa5f06ececa63 122 SUPERFAMILY SSF52980 15 121 1.3E-21 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AMJ96_CH00335 2a8dc776081ea6978fbaa5f06ececa63 122 Pfam PF02021 Uncharacterised protein family UPF0102 21 109 2.2E-19 T 12-10-2018 IPR003509 Uncharacterised protein family UPF0102 AMJ96_CH00335 2a8dc776081ea6978fbaa5f06ececa63 122 Gene3D G3DSA:3.40.1350.10 19 122 2.1E-27 T 12-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 AMJ96_PD00097 c99c8e5f564c125407e65d75f45b6fe9 315 SMART SM00354 1 56 1.3E-8 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00097 c99c8e5f564c125407e65d75f45b6fe9 315 Gene3D G3DSA:1.10.260.40 1 44 1.3E-11 T 12-10-2018 AMJ96_PD00097 c99c8e5f564c125407e65d75f45b6fe9 315 Gene3D G3DSA:3.40.50.2300 145 275 5.5E-56 T 12-10-2018 AMJ96_PD00097 c99c8e5f564c125407e65d75f45b6fe9 315 SUPERFAMILY SSF47413 1 45 5.16E-9 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PD00097 c99c8e5f564c125407e65d75f45b6fe9 315 SUPERFAMILY SSF53822 44 297 1.96E-45 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PD00097 c99c8e5f564c125407e65d75f45b6fe9 315 Pfam PF00356 Bacterial regulatory proteins, lacI family 1 33 7.4E-7 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PD00097 c99c8e5f564c125407e65d75f45b6fe9 315 Gene3D G3DSA:3.40.50.2300 48 291 5.5E-56 T 12-10-2018 AMJ96_PD00097 c99c8e5f564c125407e65d75f45b6fe9 315 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 47 290 1.1E-17 T 12-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain AMJ96_CH03068 39e2e50c5fa45a9de77745c5c927488d 315 Gene3D G3DSA:1.10.3720.10 57 313 3.1E-58 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03068 39e2e50c5fa45a9de77745c5c927488d 315 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 311 1.5E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03068 39e2e50c5fa45a9de77745c5c927488d 315 SUPERFAMILY SSF161098 61 297 4.06E-51 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01646 abbdfb1460d520304d8e2dad58b65af1 102 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 3 102 20.24 T 12-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 AMJ96_CH01646 abbdfb1460d520304d8e2dad58b65af1 102 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 97 7.4E-25 T 12-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like AMJ96_CH03786 f07cebda1a12d4def54e5370ba6e47a6 210 PIRSF PIRSF006324 1 207 1.4E-49 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMJ96_CH03786 f07cebda1a12d4def54e5370ba6e47a6 210 Pfam PF01810 LysE type translocator 15 204 7.7E-32 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMJ96_CH00815 bf65b5971fad343330a97a613005b933 127 SUPERFAMILY SSF54593 3 125 2.26E-20 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH00815 bf65b5971fad343330a97a613005b933 127 Gene3D G3DSA:3.10.180.10 1 125 1.3E-35 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH00108 cc3cc6ed4498ac7111d15afb05c8d528 139 Gene3D G3DSA:1.10.10.10 8 89 8.8E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00108 cc3cc6ed4498ac7111d15afb05c8d528 139 SUPERFAMILY SSF46785 11 133 5.9E-29 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00108 cc3cc6ed4498ac7111d15afb05c8d528 139 Pfam PF01475 Ferric uptake regulator family 16 107 5.1E-20 T 12-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AMJ96_PD00107 9442a3fb25d608122eafe7303dc1e962 312 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 100 298 2.4E-19 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00107 9442a3fb25d608122eafe7303dc1e962 312 Gene3D G3DSA:1.10.3720.10 65 307 6.5E-72 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00107 9442a3fb25d608122eafe7303dc1e962 312 SUPERFAMILY SSF161098 69 295 1.44E-63 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02539 606f4a2b912cc67fad0f81bb243e0100 236 Pfam PF08448 PAS fold 132 234 1.1E-12 T 12-10-2018 IPR013656 PAS fold-4 AMJ96_CH02539 606f4a2b912cc67fad0f81bb243e0100 236 SUPERFAMILY SSF55785 130 233 4.54E-15 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH02539 606f4a2b912cc67fad0f81bb243e0100 236 Gene3D G3DSA:3.30.450.20 125 235 2.3E-15 T 12-10-2018 AMJ96_PD00366 0d114c5297d0d64a4eef331517903dda 341 Gene3D G3DSA:3.40.50.1980 26 145 2.1E-30 T 12-10-2018 AMJ96_PD00366 0d114c5297d0d64a4eef331517903dda 341 Pfam PF01497 Periplasmic binding protein 54 315 4.1E-34 T 12-10-2018 IPR002491 ABC transporter periplasmic binding domain AMJ96_PD00366 0d114c5297d0d64a4eef331517903dda 341 SUPERFAMILY SSF53807 48 334 1.61E-37 T 12-10-2018 AMJ96_PD00366 0d114c5297d0d64a4eef331517903dda 341 Gene3D G3DSA:3.40.50.1980 157 339 3.7E-48 T 12-10-2018 AMJ96_CH02471 973d27143f725b61458e99233fca47ec 131 Pfam PF07883 Cupin domain 42 102 1.3E-10 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_CH02471 973d27143f725b61458e99233fca47ec 131 Gene3D G3DSA:2.60.120.10 1 131 7.0E-50 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH02471 973d27143f725b61458e99233fca47ec 131 SUPERFAMILY SSF51182 6 130 2.49E-31 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH04235 5ce43dba8fa2283f8c5d953b5392c3b1 309 Gene3D G3DSA:3.40.50.2300 23 295 6.4E-87 T 12-10-2018 AMJ96_CH04235 5ce43dba8fa2283f8c5d953b5392c3b1 309 Gene3D G3DSA:3.40.50.2300 128 302 6.4E-87 T 12-10-2018 AMJ96_CH04235 5ce43dba8fa2283f8c5d953b5392c3b1 309 Pfam PF13407 Periplasmic binding protein domain 23 285 7.0E-59 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_CH04235 5ce43dba8fa2283f8c5d953b5392c3b1 309 SUPERFAMILY SSF53822 22 306 4.02E-85 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PD00680 f9c43b5f8718cab3dbd6a8930f234229 112 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 10 91 6.8E-27 T 12-10-2018 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB AMJ96_CH03427 02f97845264d2e42075620779d9d630c 158 SUPERFAMILY SSF53756 2 90 1.6E-10 T 12-10-2018 AMJ96_CH03427 02f97845264d2e42075620779d9d630c 158 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 2 112 4.6E-15 T 12-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 AMJ96_CH03427 02f97845264d2e42075620779d9d630c 158 Gene3D G3DSA:3.40.50.2000 1 155 5.5E-21 T 12-10-2018 AMJ96_PC00106 bd5e72da42a338ad96ab97acd14f1e7a 335 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 123 331 1.4E-27 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00106 bd5e72da42a338ad96ab97acd14f1e7a 335 Gene3D G3DSA:1.10.3720.10 95 332 2.8E-19 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00106 bd5e72da42a338ad96ab97acd14f1e7a 335 SUPERFAMILY SSF161098 103 313 5.36E-15 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01271 e978b66645eebcb9a6a412245bf91386 430 SUPERFAMILY SSF51905 40 416 2.16E-38 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01271 e978b66645eebcb9a6a412245bf91386 430 Gene3D G3DSA:3.30.9.10 134 354 1.9E-71 T 12-10-2018 AMJ96_CH01271 e978b66645eebcb9a6a412245bf91386 430 Gene3D G3DSA:3.50.50.60 41 395 1.9E-71 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01271 e978b66645eebcb9a6a412245bf91386 430 Pfam PF01266 FAD dependent oxidoreductase 41 391 7.3E-51 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_CH02708 a3b70693b5b3925249460880d0ff0b5c 307 Gene3D G3DSA:1.10.10.10 2 89 8.4E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02708 a3b70693b5b3925249460880d0ff0b5c 307 SUPERFAMILY SSF53850 89 293 1.99E-49 T 12-10-2018 AMJ96_CH02708 a3b70693b5b3925249460880d0ff0b5c 307 Gene3D G3DSA:3.40.190.290 91 291 1.3E-65 T 12-10-2018 AMJ96_CH02708 a3b70693b5b3925249460880d0ff0b5c 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 2.6E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH02708 a3b70693b5b3925249460880d0ff0b5c 307 SUPERFAMILY SSF46785 2 86 1.44E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02708 a3b70693b5b3925249460880d0ff0b5c 307 Pfam PF03466 LysR substrate binding domain 88 291 1.2E-47 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH02571 c34f05a13502eff759343a0f0d323005 239 PRINTS PR01837 MgtC/SapB protein signature 80 102 7.1E-28 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMJ96_CH02571 c34f05a13502eff759343a0f0d323005 239 PRINTS PR01837 MgtC/SapB protein signature 107 131 7.1E-28 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMJ96_CH02571 c34f05a13502eff759343a0f0d323005 239 PRINTS PR01837 MgtC/SapB protein signature 44 62 7.1E-28 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMJ96_CH02571 c34f05a13502eff759343a0f0d323005 239 PRINTS PR01837 MgtC/SapB protein signature 25 44 7.1E-28 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMJ96_CH02571 c34f05a13502eff759343a0f0d323005 239 Pfam PF02308 MgtC family 23 151 3.3E-27 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 AMJ96_CH01764 de7396011bd494a0fe982bec94752437 502 SUPERFAMILY SSF53720 9 487 3.14E-162 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 AMJ96_CH01764 de7396011bd494a0fe982bec94752437 502 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 290 301 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 AMJ96_CH01764 de7396011bd494a0fe982bec94752437 502 Gene3D G3DSA:3.40.309.10 266 456 3.2E-171 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 AMJ96_CH01764 de7396011bd494a0fe982bec94752437 502 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 262 269 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 AMJ96_CH01764 de7396011bd494a0fe982bec94752437 502 Gene3D G3DSA:3.40.605.10 34 486 3.2E-171 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_CH01764 de7396011bd494a0fe982bec94752437 502 Pfam PF00171 Aldehyde dehydrogenase family 26 486 9.8E-169 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 AMJ96_CH00827 12c31b4f52f5b6f19dff62453d2084ec 499 Pfam PF01384 Phosphate transporter family 78 487 4.1E-104 T 12-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 AMJ96_PD00527 453206898cf870b6bb48e43a9f7728a0 475 SUPERFAMILY SSF48208 47 460 1.19E-68 T 12-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 AMJ96_PD00527 453206898cf870b6bb48e43a9f7728a0 475 Gene3D G3DSA:1.50.10.10 43 474 8.4E-77 T 12-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 AMJ96_PD00527 453206898cf870b6bb48e43a9f7728a0 475 PRINTS PR00736 Glycosyl hydrolase family 15 signature 321 340 1.3E-9 T 12-10-2018 IPR000165 Glucoamylase GO:0004339|GO:0005976 KEGG: 00500+3.2.1.3|MetaCyc: PWY-5941 AMJ96_PD00527 453206898cf870b6bb48e43a9f7728a0 475 PRINTS PR00736 Glycosyl hydrolase family 15 signature 201 219 1.3E-9 T 12-10-2018 IPR000165 Glucoamylase GO:0004339|GO:0005976 KEGG: 00500+3.2.1.3|MetaCyc: PWY-5941 AMJ96_PD00527 453206898cf870b6bb48e43a9f7728a0 475 PRINTS PR00736 Glycosyl hydrolase family 15 signature 442 457 1.3E-9 T 12-10-2018 IPR000165 Glucoamylase GO:0004339|GO:0005976 KEGG: 00500+3.2.1.3|MetaCyc: PWY-5941 AMJ96_PD00527 453206898cf870b6bb48e43a9f7728a0 475 PRINTS PR00736 Glycosyl hydrolase family 15 signature 67 84 1.3E-9 T 12-10-2018 IPR000165 Glucoamylase GO:0004339|GO:0005976 KEGG: 00500+3.2.1.3|MetaCyc: PWY-5941 AMJ96_PD00527 453206898cf870b6bb48e43a9f7728a0 475 Pfam PF00723 Glycosyl hydrolases family 15 69 454 8.9E-14 T 12-10-2018 IPR011613 GH15-like domain Reactome: R-HSA-70221 AMJ96_PC00243 0e094580a724b41ed8a78125ecacdcbe 152 Pfam PF04214 Protein of unknown function, DUF 55 121 1.3E-29 T 12-10-2018 IPR007332 Protein of unknown function DUF411 AMJ96_PB00161 535e0ecf43c26399f7e359a22b5b8fa7 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 6.3E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00161 535e0ecf43c26399f7e359a22b5b8fa7 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 6.3E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00161 535e0ecf43c26399f7e359a22b5b8fa7 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 6.3E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00161 535e0ecf43c26399f7e359a22b5b8fa7 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.3E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00161 535e0ecf43c26399f7e359a22b5b8fa7 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 6.3E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00161 535e0ecf43c26399f7e359a22b5b8fa7 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 6.3E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00161 535e0ecf43c26399f7e359a22b5b8fa7 255 Gene3D G3DSA:3.40.50.720 2 255 2.1E-86 T 12-10-2018 AMJ96_PB00161 535e0ecf43c26399f7e359a22b5b8fa7 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 247 6.6E-72 T 12-10-2018 AMJ96_PB00161 535e0ecf43c26399f7e359a22b5b8fa7 255 SUPERFAMILY SSF51735 5 249 1.63E-82 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PB00161 535e0ecf43c26399f7e359a22b5b8fa7 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_PB00161 535e0ecf43c26399f7e359a22b5b8fa7 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 4.8E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00161 535e0ecf43c26399f7e359a22b5b8fa7 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 4.8E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00161 535e0ecf43c26399f7e359a22b5b8fa7 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 4.8E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00159 e0e5b3e696af8c7da7fe50614d0c66b2 409 Gene3D G3DSA:3.40.50.1820 133 407 2.5E-41 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PB00159 e0e5b3e696af8c7da7fe50614d0c66b2 409 Pfam PF12697 Alpha/beta hydrolase family 162 392 1.5E-13 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PB00159 e0e5b3e696af8c7da7fe50614d0c66b2 409 SUPERFAMILY SSF53474 139 400 3.03E-41 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01249 61ec546a618a41d6b6d811fc5e706cf2 211 PIRSF PIRSF006324 1 207 2.0E-41 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMJ96_CH01249 61ec546a618a41d6b6d811fc5e706cf2 211 Pfam PF01810 LysE type translocator 18 200 3.5E-24 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMJ96_PD00526 5c98017914af570ecdd07b26f72fab9c 114 SMART SM00530 10 65 0.0022 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_PD00526 5c98017914af570ecdd07b26f72fab9c 114 Gene3D G3DSA:1.10.260.40 6 73 5.6E-9 T 12-10-2018 AMJ96_PD00526 5c98017914af570ecdd07b26f72fab9c 114 SUPERFAMILY SSF47413 3 68 1.0E-9 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PD00526 5c98017914af570ecdd07b26f72fab9c 114 Pfam PF07022 Bacteriophage CI repressor helix-turn-helix domain 11 72 2.8E-8 T 12-10-2018 IPR010744 Bacteriophage CI repressor GO:0003677|GO:0045892 AMJ96_CH00969 cce27fd33420d44aee9e6568aa32fcdc 163 Pfam PF00583 Acetyltransferase (GNAT) family 43 136 3.2E-14 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH00969 cce27fd33420d44aee9e6568aa32fcdc 163 Gene3D G3DSA:3.40.630.30 2 162 2.1E-39 T 12-10-2018 AMJ96_CH00969 cce27fd33420d44aee9e6568aa32fcdc 163 SUPERFAMILY SSF55729 1 140 4.36E-25 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH03542 ac4b753903584d505d3e3ca366a3748d 265 Gene3D G3DSA:3.40.190.80 149 260 3.3E-29 T 12-10-2018 AMJ96_CH03542 ac4b753903584d505d3e3ca366a3748d 265 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 210 224 - T 12-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 AMJ96_CH03542 ac4b753903584d505d3e3ca366a3748d 265 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 1 254 4.1E-80 T 12-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 AMJ96_CH03542 ac4b753903584d505d3e3ca366a3748d 265 SUPERFAMILY SSF56655 2 241 8.64E-64 T 12-10-2018 AMJ96_CH03542 ac4b753903584d505d3e3ca366a3748d 265 Hamap MF_02095 3'(2'),5'-bisphosphate nucleotidase CysQ [cysQ]. 1 257 37.444 T 12-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 AMJ96_CH03542 ac4b753903584d505d3e3ca366a3748d 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 33 53 4.3E-13 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH03542 ac4b753903584d505d3e3ca366a3748d 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 55 71 4.3E-13 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH03542 ac4b753903584d505d3e3ca366a3748d 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 207 231 4.3E-13 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH03542 ac4b753903584d505d3e3ca366a3748d 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 79 95 4.3E-13 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH03542 ac4b753903584d505d3e3ca366a3748d 265 Gene3D G3DSA:3.30.540.10 1 146 2.7E-36 T 12-10-2018 AMJ96_CH03542 ac4b753903584d505d3e3ca366a3748d 265 Pfam PF00459 Inositol monophosphatase family 5 243 6.3E-46 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH01358 214bd711fedbed35e52f9c63afbd53aa 495 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 55 216 2.9E-18 T 12-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like AMJ96_CH02522 f049b87157f8a804d70eb4113617be5b 253 SUPERFAMILY SSF51658 13 235 2.28E-34 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_CH02522 f049b87157f8a804d70eb4113617be5b 253 Pfam PF01261 Xylose isomerase-like TIM barrel 24 211 1.4E-15 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMJ96_CH02522 f049b87157f8a804d70eb4113617be5b 253 Gene3D G3DSA:3.20.20.150 1 252 3.1E-52 T 12-10-2018 AMJ96_CH02237 e15aec3ee093b9b9eb1eec17ac5e8237 219 Gene3D G3DSA:3.40.50.150 47 200 1.0E-22 T 12-10-2018 AMJ96_CH02237 e15aec3ee093b9b9eb1eec17ac5e8237 219 SUPERFAMILY SSF53335 50 172 8.89E-24 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH02237 e15aec3ee093b9b9eb1eec17ac5e8237 219 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 78 146 1.4E-11 T 12-10-2018 AMJ96_CH03390 ac2b16564ef1e9710863c53e9c40760c 108 Pfam PF08734 GYD domain 4 94 1.6E-24 T 12-10-2018 IPR014845 Protein GYD/TTHA1554 AMJ96_CH02288 680fab3d4feeee8ecdc6dfd0135ed551 157 SUPERFAMILY SSF55729 12 151 4.01E-33 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH02288 680fab3d4feeee8ecdc6dfd0135ed551 157 Pfam PF13673 Acetyltransferase (GNAT) domain 56 150 1.6E-15 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH02288 680fab3d4feeee8ecdc6dfd0135ed551 157 Gene3D G3DSA:3.40.630.30 5 151 1.3E-39 T 12-10-2018 AMJ96_CH01430 6335b587d7d01481e7acc70e2f189064 49 Pfam PF12086 Protein of unknown function (DUF3563) 15 45 7.5E-8 T 12-10-2018 IPR021946 Protein of unknown function DUF3563 AMJ96_CH00965 9e8fef0ef2701ce495d56be06abf7463 101 SUPERFAMILY SSF101386 23 98 9.72E-16 T 12-10-2018 AMJ96_CH00965 9e8fef0ef2701ce495d56be06abf7463 101 Gene3D G3DSA:1.10.287.1080 4 98 1.5E-15 T 12-10-2018 AMJ96_CH00965 9e8fef0ef2701ce495d56be06abf7463 101 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 4 92 5.8E-5 T 12-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 AMJ96_CH00136 9cefe34ac9483dd5ae408c16c3740144 122 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 115 2.7E-7 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH00136 9cefe34ac9483dd5ae408c16c3740144 122 SUPERFAMILY SSF54593 4 121 3.1E-20 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH00136 9cefe34ac9483dd5ae408c16c3740144 122 PIRSF PIRSF039020 1 122 2.4E-49 T 12-10-2018 IPR026275 Glyoxalase/dioxygenase/EhpR AMJ96_CH00136 9cefe34ac9483dd5ae408c16c3740144 122 Gene3D G3DSA:3.30.720.120 1 53 1.2E-22 T 12-10-2018 AMJ96_CH00136 9cefe34ac9483dd5ae408c16c3740144 122 Gene3D G3DSA:3.30.720.110 66 120 5.2E-22 T 12-10-2018 AMJ96_CH03267 f93e9d133cd9b0952a5a4c10ca28a33d 421 Pfam PF05992 SbmA/BacA-like family 84 397 9.2E-156 T 12-10-2018 IPR009248 SbmA/BacA-like GO:0015833|GO:0016021|GO:1904680 AMJ96_CH04160 4e9b5f05ebf35c48f985eaaa624c7bcb 410 Pfam PF05977 Transmembrane secretion effector 10 403 1.4E-30 T 12-10-2018 IPR010290 Transmembrane secretion effector AMJ96_CH04160 4e9b5f05ebf35c48f985eaaa624c7bcb 410 SUPERFAMILY SSF103473 18 402 7.59E-38 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH04160 4e9b5f05ebf35c48f985eaaa624c7bcb 410 Gene3D G3DSA:1.20.1250.20 11 207 1.8E-22 T 12-10-2018 AMJ96_CH04160 4e9b5f05ebf35c48f985eaaa624c7bcb 410 Gene3D G3DSA:1.20.1250.20 216 401 1.2E-6 T 12-10-2018 AMJ96_CH03493 2d52e18a95d5f7a9fe071d5d4aa4e5d6 437 Pfam PF14280 Domain of unknown function (DUF4365) 14 140 4.8E-21 T 12-10-2018 IPR025375 Domain of unknown function DUF4365 AMJ96_CH03073 a6344bd2457e6088b3945c86446ff4c6 77 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 3 40 1.3E-8 T 12-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM AMJ96_CH03073 a6344bd2457e6088b3945c86446ff4c6 77 Gene3D G3DSA:3.40.1620.10 2 38 3.0E-5 T 12-10-2018 AMJ96_CH03073 a6344bd2457e6088b3945c86446ff4c6 77 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 3 40 1.5E-5 T 12-10-2018 AMJ96_CH03073 a6344bd2457e6088b3945c86446ff4c6 77 SUPERFAMILY SSF143120 2 40 1.31E-8 T 12-10-2018 IPR036165 YefM-like superfamily AMJ96_CH03822 576bc11fd67eb278202579e72b892c20 340 Pfam PF02530 Porin subfamily 24 324 4.9E-92 T 12-10-2018 IPR003684 Porin, alpha proteobacteria type GO:0015288|GO:0016020|GO:0055085 AMJ96_CH03822 576bc11fd67eb278202579e72b892c20 340 SUPERFAMILY SSF56935 57 340 8.66E-19 T 12-10-2018 AMJ96_CH03822 576bc11fd67eb278202579e72b892c20 340 Gene3D G3DSA:2.40.160.10 124 337 1.6E-8 T 12-10-2018 IPR023614 Porin domain superfamily AMJ96_PA00303 2adf9486b3e99f0c3f7525631cf05179 405 Gene3D G3DSA:3.40.50.300 121 403 6.0E-69 T 12-10-2018 AMJ96_PA00303 2adf9486b3e99f0c3f7525631cf05179 405 Gene3D G3DSA:1.10.1660.10 52 107 8.0E-6 T 12-10-2018 AMJ96_PA00303 2adf9486b3e99f0c3f7525631cf05179 405 Pfam PF13614 AAA domain 121 299 9.7E-40 T 12-10-2018 IPR025669 AAA domain AMJ96_PA00303 2adf9486b3e99f0c3f7525631cf05179 405 TIGRFAM TIGR03453 partition_RepA: plasmid partitioning protein RepA 21 404 1.7E-193 T 12-10-2018 IPR017818 Plasmid partitioning protein, RepA AMJ96_PA00303 2adf9486b3e99f0c3f7525631cf05179 405 SUPERFAMILY SSF52540 119 369 2.66E-50 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00016 27c6346f650ba51d0a609c2f5ceaea23 280 SUPERFAMILY SSF56529 60 276 1.96E-81 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMJ96_CH00016 27c6346f650ba51d0a609c2f5ceaea23 280 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 71 275 5.5E-71 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 AMJ96_CH00016 27c6346f650ba51d0a609c2f5ceaea23 280 Gene3D G3DSA:3.90.850.10 66 280 1.6E-87 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMJ96_PA00054 43c130cbba5bbe718914804ef61adb75 303 Pfam PF00701 Dihydrodipicolinate synthetase family 6 290 1.2E-61 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PA00054 43c130cbba5bbe718914804ef61adb75 303 SUPERFAMILY SSF51569 2 291 1.47E-89 T 12-10-2018 AMJ96_PA00054 43c130cbba5bbe718914804ef61adb75 303 SMART SM01130 4 292 9.1E-99 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PA00054 43c130cbba5bbe718914804ef61adb75 303 Gene3D G3DSA:3.20.20.70 1 297 2.7E-91 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_PA00054 43c130cbba5bbe718914804ef61adb75 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 131 148 2.8E-11 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PA00054 43c130cbba5bbe718914804ef61adb75 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 38 59 2.8E-11 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PA00054 43c130cbba5bbe718914804ef61adb75 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 74 92 2.8E-11 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PA00054 43c130cbba5bbe718914804ef61adb75 303 PIRSF PIRSF001365 1 301 7.2E-86 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_PD00589 908832ca2372ced03cccc57d403a0733 349 Pfam PF02530 Porin subfamily 26 336 9.2E-92 T 12-10-2018 IPR003684 Porin, alpha proteobacteria type GO:0015288|GO:0016020|GO:0055085 AMJ96_PD00589 908832ca2372ced03cccc57d403a0733 349 SUPERFAMILY SSF56935 57 339 4.27E-15 T 12-10-2018 AMJ96_PD00589 908832ca2372ced03cccc57d403a0733 349 Gene3D G3DSA:2.40.160.10 131 345 4.6E-8 T 12-10-2018 IPR023614 Porin domain superfamily AMJ96_CH02030 9fa5e89656e4edae911bfa37ccab39c3 206 SUPERFAMILY SSF52833 37 200 8.5E-33 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH02030 9fa5e89656e4edae911bfa37ccab39c3 206 Gene3D G3DSA:3.40.30.10 31 205 6.5E-41 T 12-10-2018 AMJ96_CH02030 9fa5e89656e4edae911bfa37ccab39c3 206 Pfam PF13462 Thioredoxin 37 200 1.4E-31 T 12-10-2018 IPR012336 Thioredoxin-like fold AMJ96_PC00063 22d3e542091b21b2e57079b3475d876a 291 Gene3D G3DSA:3.40.50.1820 4 290 4.2E-59 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PC00063 22d3e542091b21b2e57079b3475d876a 291 PRINTS PR00111 Alpha/beta hydrolase fold signature 232 246 6.4E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PC00063 22d3e542091b21b2e57079b3475d876a 291 PRINTS PR00111 Alpha/beta hydrolase fold signature 55 70 6.4E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PC00063 22d3e542091b21b2e57079b3475d876a 291 SUPERFAMILY SSF53474 7 287 1.7E-64 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PC00063 22d3e542091b21b2e57079b3475d876a 291 Pfam PF00561 alpha/beta hydrolase fold 30 272 5.2E-25 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PC00063 22d3e542091b21b2e57079b3475d876a 291 PRINTS PR00412 Epoxide hydrolase signature 100 113 9.4E-7 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_PC00063 22d3e542091b21b2e57079b3475d876a 291 PRINTS PR00412 Epoxide hydrolase signature 262 284 9.4E-7 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_PC00063 22d3e542091b21b2e57079b3475d876a 291 PRINTS PR00412 Epoxide hydrolase signature 36 54 9.4E-7 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_PC00063 22d3e542091b21b2e57079b3475d876a 291 PRINTS PR00412 Epoxide hydrolase signature 114 127 9.4E-7 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_PA00248 33639b4c40fe07811d4b6160f9f57428 224 Gene3D G3DSA:3.50.30.40 23 174 9.3E-49 T 12-10-2018 AMJ96_PA00248 33639b4c40fe07811d4b6160f9f57428 224 SUPERFAMILY SSF89562 21 181 1.18E-43 T 12-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily AMJ96_PA00248 33639b4c40fe07811d4b6160f9f57428 224 Pfam PF03737 Aldolase/RraA 27 172 7.0E-35 T 12-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AMJ96_CH02526 742a3c68e28b57b01370033a2d795eab 301 SUPERFAMILY SSF161098 60 286 4.84E-47 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02526 742a3c68e28b57b01370033a2d795eab 301 Gene3D G3DSA:1.10.3720.10 56 293 1.3E-51 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02526 742a3c68e28b57b01370033a2d795eab 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 287 1.1E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00254 18a2b926416c6b0587c3a2bedd4a0e57 390 PIRSF PIRSF001434 3 388 5.8E-118 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMJ96_PC00254 18a2b926416c6b0587c3a2bedd4a0e57 390 Gene3D G3DSA:3.40.640.10 11 258 2.3E-78 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_PC00254 18a2b926416c6b0587c3a2bedd4a0e57 390 SUPERFAMILY SSF53383 27 385 1.33E-89 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_PC00254 18a2b926416c6b0587c3a2bedd4a0e57 390 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 22 384 7.3E-99 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AMJ96_PC00254 18a2b926416c6b0587c3a2bedd4a0e57 390 Gene3D G3DSA:3.90.1150.10 259 390 8.2E-29 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_PD00376 1a40707f709b5384db4d05966f1ff214 293 SUPERFAMILY SSF56281 17 228 7.98E-44 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_PD00376 1a40707f709b5384db4d05966f1ff214 293 Pfam PF00753 Metallo-beta-lactamase superfamily 24 209 7.0E-19 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_PD00376 1a40707f709b5384db4d05966f1ff214 293 SMART SM00849 25 209 2.4E-23 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_PD00376 1a40707f709b5384db4d05966f1ff214 293 Gene3D G3DSA:3.60.15.10 13 232 1.8E-41 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH00266 fb76213ab54d29053bc5c36ac70cd921 155 Gene3D G3DSA:1.10.490.10 23 146 3.4E-32 T 12-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 AMJ96_CH00266 fb76213ab54d29053bc5c36ac70cd921 155 SUPERFAMILY SSF46458 29 137 3.84E-25 T 12-10-2018 IPR009050 Globin-like superfamily AMJ96_PC00124 a1d42565a009ab95c406cd48acc9bce5 67 Pfam PF09957 Bacterial antitoxin of type II TA system, VapB 2 44 1.3E-10 T 12-10-2018 IPR019239 Bacterial antitoxin of type II TA system, VapB AMJ96_CH01505 edec3aec85211ae5d484b7d128ce8e69 393 Pfam PF03739 Predicted permease YjgP/YjgQ family 7 353 3.8E-59 T 12-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 AMJ96_CH04189 b21deb7356dec3e65e3e5be04908a027 133 Pfam PF10984 Protein of unknown function (DUF2794) 37 121 8.6E-40 T 12-10-2018 IPR021252 Protein of unknown function DUF2794 AMJ96_CH00013 c1555536c31dd43b19c765bf1250dae2 199 Pfam PF00881 Nitroreductase family 19 62 8.7E-11 T 12-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AMJ96_CH00013 c1555536c31dd43b19c765bf1250dae2 199 Pfam PF00881 Nitroreductase family 74 164 9.8E-6 T 12-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AMJ96_CH00013 c1555536c31dd43b19c765bf1250dae2 199 SUPERFAMILY SSF55469 8 194 1.83E-46 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMJ96_CH00013 c1555536c31dd43b19c765bf1250dae2 199 Gene3D G3DSA:3.40.109.10 2 197 2.3E-49 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMJ96_CH00930 34be41dc9c3309611737f88b68c3c664 149 Pfam PF01638 HxlR-like helix-turn-helix 18 103 2.4E-21 T 12-10-2018 IPR002577 Helix-turn-helix, HxlR type AMJ96_CH00930 34be41dc9c3309611737f88b68c3c664 149 SUPERFAMILY SSF46785 3 136 2.73E-33 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00930 34be41dc9c3309611737f88b68c3c664 149 Gene3D G3DSA:1.10.10.10 4 148 5.9E-41 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00277 4304cd380db31ced8c1955eb9bc3dc36 584 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 344 373 7.0E-37 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_PD00277 4304cd380db31ced8c1955eb9bc3dc36 584 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 498 527 7.0E-37 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_PD00277 4304cd380db31ced8c1955eb9bc3dc36 584 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 421 448 7.0E-37 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_PD00277 4304cd380db31ced8c1955eb9bc3dc36 584 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 450 479 7.0E-37 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 AMJ96_PD00277 4304cd380db31ced8c1955eb9bc3dc36 584 SMART SM00283 323 570 9.8E-86 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_PD00277 4304cd380db31ced8c1955eb9bc3dc36 584 Gene3D G3DSA:1.10.8.500 192 240 6.4E-14 T 12-10-2018 AMJ96_PD00277 4304cd380db31ced8c1955eb9bc3dc36 584 Pfam PF00672 HAMP domain 189 237 1.9E-6 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00277 4304cd380db31ced8c1955eb9bc3dc36 584 Gene3D G3DSA:1.10.287.950 272 572 4.0E-68 T 12-10-2018 AMJ96_PD00277 4304cd380db31ced8c1955eb9bc3dc36 584 SMART SM00304 189 242 4.0E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00277 4304cd380db31ced8c1955eb9bc3dc36 584 SMART SM00304 270 322 5.5 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 AMJ96_PD00277 4304cd380db31ced8c1955eb9bc3dc36 584 SUPERFAMILY SSF58104 218 571 2.35E-61 T 12-10-2018 AMJ96_PD00277 4304cd380db31ced8c1955eb9bc3dc36 584 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 384 538 6.4E-46 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 AMJ96_PD00588 ab3d5ad33d4e3c781217c4a2884587d5 80 Pfam PF06169 Protein of unknown function (DUF982) 10 75 1.4E-12 T 12-10-2018 IPR010385 Protein of unknown function DUF982 AMJ96_PC00128 4a017c3eaf499fbd7d907f6ee1e06afa 305 SUPERFAMILY SSF53697 114 275 1.13E-20 T 12-10-2018 AMJ96_PC00128 4a017c3eaf499fbd7d907f6ee1e06afa 305 Pfam PF01380 SIS domain 143 261 5.2E-13 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMJ96_PC00128 4a017c3eaf499fbd7d907f6ee1e06afa 305 SUPERFAMILY SSF46689 17 89 3.4E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PC00128 4a017c3eaf499fbd7d907f6ee1e06afa 305 Gene3D G3DSA:1.10.10.10 13 92 2.3E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00128 4a017c3eaf499fbd7d907f6ee1e06afa 305 Gene3D G3DSA:3.40.50.10490 110 289 1.8E-30 T 12-10-2018 AMJ96_PC00128 4a017c3eaf499fbd7d907f6ee1e06afa 305 Pfam PF01418 Helix-turn-helix domain, rpiR family 18 86 1.4E-9 T 12-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AMJ96_CH02988 bb00eabec68979399d51328dab7b34cb 208 SUPERFAMILY SSF52499 2 207 5.1E-45 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMJ96_CH02988 bb00eabec68979399d51328dab7b34cb 208 Pfam PF00857 Isochorismatase family 3 204 4.6E-30 T 12-10-2018 IPR000868 Isochorismatase-like GO:0003824 AMJ96_CH02988 bb00eabec68979399d51328dab7b34cb 208 Gene3D G3DSA:3.40.50.850 1 207 3.1E-69 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMJ96_CH01413 8c7c8c00d75a03af62aaec6659798dc8 501 Pfam PF13440 Polysaccharide biosynthesis protein 40 345 2.0E-18 T 12-10-2018 AMJ96_CH01413 8c7c8c00d75a03af62aaec6659798dc8 501 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 347 477 3.4E-7 T 12-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain AMJ96_PD00095 80c69709d635ed2326a856b3547f8315 157 ProSitePatterns PS00893 Nudix box signature. 43 64 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AMJ96_PD00095 80c69709d635ed2326a856b3547f8315 157 PRINTS PR00502 NUDIX hydrolase family signature 38 52 6.4E-5 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMJ96_PD00095 80c69709d635ed2326a856b3547f8315 157 PRINTS PR00502 NUDIX hydrolase family signature 52 67 6.4E-5 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AMJ96_PD00095 80c69709d635ed2326a856b3547f8315 157 Gene3D G3DSA:3.90.79.10 2 156 1.3E-22 T 12-10-2018 AMJ96_PD00095 80c69709d635ed2326a856b3547f8315 157 SUPERFAMILY SSF55811 2 150 4.06E-20 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_PD00095 80c69709d635ed2326a856b3547f8315 157 Pfam PF00293 NUDIX domain 11 141 4.2E-13 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMJ96_PA00121 770c8fa69d437a2699a76447f5a7b692 165 Gene3D G3DSA:2.40.50.140 29 137 1.7E-35 T 12-10-2018 AMJ96_PA00121 770c8fa69d437a2699a76447f5a7b692 165 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 1 141 30.502 T 12-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 AMJ96_PA00121 770c8fa69d437a2699a76447f5a7b692 165 SUPERFAMILY SSF82093 29 137 1.96E-33 T 12-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 AMJ96_PA00121 770c8fa69d437a2699a76447f5a7b692 165 Pfam PF03100 CcmE 3 131 2.7E-41 T 12-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 AMJ96_PD00492 54d48fdabea5bf192ecad0156e616296 209 Gene3D G3DSA:1.10.357.10 11 108 5.9E-13 T 12-10-2018 AMJ96_PD00492 54d48fdabea5bf192ecad0156e616296 209 SUPERFAMILY SSF46689 15 73 2.21E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00492 54d48fdabea5bf192ecad0156e616296 209 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 63 5.8E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH02698 89f3638b24010f1ced52988a218ac516 226 SUPERFAMILY SSF48498 84 220 5.85E-25 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH02698 89f3638b24010f1ced52988a218ac516 226 Gene3D G3DSA:1.10.357.10 1 226 2.5E-64 T 12-10-2018 AMJ96_CH02698 89f3638b24010f1ced52988a218ac516 226 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 79 199 5.8E-16 T 12-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 AMJ96_CH02698 89f3638b24010f1ced52988a218ac516 226 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 67 1.0E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH02698 89f3638b24010f1ced52988a218ac516 226 SUPERFAMILY SSF46689 15 73 2.26E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH01583 17e36b58bc80f577b10057fb6d990e3a 97 Pfam PF01381 Helix-turn-helix 8 40 2.1E-5 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH01583 17e36b58bc80f577b10057fb6d990e3a 97 SUPERFAMILY SSF47413 2 61 3.1E-7 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH01583 17e36b58bc80f577b10057fb6d990e3a 97 Gene3D G3DSA:1.10.260.40 1 77 3.0E-15 T 12-10-2018 AMJ96_CH04334 34136b7a05d4585f344397de8eafaabb 377 Gene3D G3DSA:3.20.20.370 138 376 6.5E-84 T 12-10-2018 AMJ96_CH04334 34136b7a05d4585f344397de8eafaabb 377 SUPERFAMILY SSF88713 154 370 6.23E-60 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMJ96_CH04334 34136b7a05d4585f344397de8eafaabb 377 Pfam PF04748 Divergent polysaccharide deacetylase 157 370 1.2E-62 T 12-10-2018 IPR006837 Divergent polysaccharide deacetylase AMJ96_CH03311 1d0dab21aab63d444974ed1c0a1b85b7 299 SUPERFAMILY SSF103481 191 289 1.83E-12 T 12-10-2018 AMJ96_CH03311 1d0dab21aab63d444974ed1c0a1b85b7 299 SUPERFAMILY SSF103481 43 140 6.15E-13 T 12-10-2018 AMJ96_CH03311 1d0dab21aab63d444974ed1c0a1b85b7 299 Pfam PF00892 EamA-like transporter family 11 136 5.1E-16 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH03311 1d0dab21aab63d444974ed1c0a1b85b7 299 Pfam PF00892 EamA-like transporter family 161 288 5.6E-14 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_PC00246 b5703a3c4bf4121ab0f4c01f1a9e947b 448 SUPERFAMILY SSF49503 164 327 4.99E-33 T 12-10-2018 IPR008972 Cupredoxin AMJ96_PC00246 b5703a3c4bf4121ab0f4c01f1a9e947b 448 SUPERFAMILY SSF49503 60 194 3.87E-38 T 12-10-2018 IPR008972 Cupredoxin AMJ96_PC00246 b5703a3c4bf4121ab0f4c01f1a9e947b 448 Pfam PF07731 Multicopper oxidase 216 328 1.3E-19 T 12-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 AMJ96_PC00246 b5703a3c4bf4121ab0f4c01f1a9e947b 448 ProSitePatterns PS00080 Multicopper oxidases signature 2. 315 326 - T 12-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 AMJ96_PC00246 b5703a3c4bf4121ab0f4c01f1a9e947b 448 Pfam PF07732 Multicopper oxidase 81 191 4.8E-36 T 12-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 AMJ96_PC00246 b5703a3c4bf4121ab0f4c01f1a9e947b 448 Gene3D G3DSA:2.60.40.420 61 333 1.5E-67 T 12-10-2018 IPR008972 Cupredoxin AMJ96_CH01350 03b78ecd0101ac8af59d15a6205488c0 204 Pfam PF03734 L,D-transpeptidase catalytic domain 67 201 5.9E-16 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMJ96_CH01350 03b78ecd0101ac8af59d15a6205488c0 204 Gene3D G3DSA:2.40.440.10 27 204 9.8E-43 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH01350 03b78ecd0101ac8af59d15a6205488c0 204 SUPERFAMILY SSF141523 61 202 8.24E-32 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_PA00119 ca88569d38d1801928069c78a30229c8 225 PIRSF PIRSF036990 1 225 8.2E-60 T 12-10-2018 IPR017080 Uncharacterised conserved protein UCP036990, CBS, BON AMJ96_PA00119 ca88569d38d1801928069c78a30229c8 225 SMART SM00116 10 58 2.1E-9 T 12-10-2018 IPR000644 CBS domain AMJ96_PA00119 ca88569d38d1801928069c78a30229c8 225 SMART SM00116 95 142 1.5E-11 T 12-10-2018 IPR000644 CBS domain AMJ96_PA00119 ca88569d38d1801928069c78a30229c8 225 Pfam PF00571 CBS domain 88 142 2.3E-14 T 12-10-2018 IPR000644 CBS domain AMJ96_PA00119 ca88569d38d1801928069c78a30229c8 225 Pfam PF00571 CBS domain 3 55 1.9E-12 T 12-10-2018 IPR000644 CBS domain AMJ96_PA00119 ca88569d38d1801928069c78a30229c8 225 Pfam PF04972 BON domain 153 210 1.3E-9 T 12-10-2018 IPR007055 BON domain AMJ96_PA00119 ca88569d38d1801928069c78a30229c8 225 Gene3D G3DSA:3.10.580.10 1 162 7.0E-39 T 12-10-2018 AMJ96_PA00119 ca88569d38d1801928069c78a30229c8 225 SUPERFAMILY SSF54631 1 142 6.82E-34 T 12-10-2018 AMJ96_PC00142 a58f3bd64585f136509230b18f1bc029 538 SUPERFAMILY SSF52129 28 210 2.67E-8 T 12-10-2018 IPR029030 Caspase-like domain superfamily AMJ96_PC00142 a58f3bd64585f136509230b18f1bc029 538 Pfam PF00656 Caspase domain 35 296 1.7E-16 T 12-10-2018 AMJ96_PC00142 a58f3bd64585f136509230b18f1bc029 538 ProSitePatterns PS00018 EF-hand calcium-binding domain. 261 273 - T 12-10-2018 IPR018247 EF-Hand 1, calcium-binding site AMJ96_PC00142 a58f3bd64585f136509230b18f1bc029 538 Gene3D G3DSA:3.40.50.1460 33 304 9.4E-37 T 12-10-2018 AMJ96_PD00609 c35bb737b9754027ff4267fd7823a236 170 SMART SM00895 19 146 4.8E-21 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00609 c35bb737b9754027ff4267fd7823a236 170 SUPERFAMILY SSF48008 19 152 2.28E-25 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00609 c35bb737b9754027ff4267fd7823a236 170 Gene3D G3DSA:1.20.120.530 3 154 6.4E-28 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00609 c35bb737b9754027ff4267fd7823a236 170 Pfam PF07729 FCD domain 21 145 8.6E-23 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_CH03170 79442f3d924eb725d3e8d3c3f8722208 205 Pfam PF06823 Protein of unknown function (DUF1236) 146 205 1.2E-19 T 12-10-2018 IPR009642 Protein of unknown function DUF1236 AMJ96_CH03170 79442f3d924eb725d3e8d3c3f8722208 205 Gene3D G3DSA:2.30.30.40 25 85 8.6E-12 T 12-10-2018 AMJ96_CH03170 79442f3d924eb725d3e8d3c3f8722208 205 Pfam PF08239 Bacterial SH3 domain 32 83 5.5E-10 T 12-10-2018 IPR003646 SH3-like domain, bacterial-type AMJ96_CH02203 73c09a7f72f7fc988c52bc33b0b1d9ee 460 Gene3D G3DSA:3.40.640.10 66 345 1.7E-165 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH02203 73c09a7f72f7fc988c52bc33b0b1d9ee 460 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 255 292 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH02203 73c09a7f72f7fc988c52bc33b0b1d9ee 460 PIRSF PIRSF000521 31 450 1.0E-27 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH02203 73c09a7f72f7fc988c52bc33b0b1d9ee 460 Gene3D G3DSA:3.90.1150.10 12 448 1.7E-165 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH02203 73c09a7f72f7fc988c52bc33b0b1d9ee 460 SUPERFAMILY SSF53383 16 448 1.83E-118 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH02203 73c09a7f72f7fc988c52bc33b0b1d9ee 460 Pfam PF00202 Aminotransferase class-III 31 447 7.4E-87 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AMJ96_CH03416 d77930585cac10e8c46ccbd2c9804f85 168 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 85 119 4.2E-15 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH03416 d77930585cac10e8c46ccbd2c9804f85 168 SUPERFAMILY SSF51161 26 140 5.13E-30 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily AMJ96_CH03416 d77930585cac10e8c46ccbd2c9804f85 168 Gene3D G3DSA:2.160.10.10 35 164 2.3E-28 T 12-10-2018 AMJ96_CH00327 415c07e2c04a6df7bf2b79fa8af4bc18 326 SUPERFAMILY SSF51735 10 268 2.76E-56 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00327 415c07e2c04a6df7bf2b79fa8af4bc18 326 Gene3D G3DSA:3.40.50.720 9 258 2.3E-53 T 12-10-2018 AMJ96_CH00327 415c07e2c04a6df7bf2b79fa8af4bc18 326 Pfam PF01370 NAD dependent epimerase/dehydratase family 10 218 7.5E-15 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_CH01057 e060c264b7a50b6987480400a6095230 174 Gene3D G3DSA:3.40.190.10 35 134 1.4E-38 T 12-10-2018 AMJ96_CH01057 e060c264b7a50b6987480400a6095230 174 Gene3D G3DSA:3.40.190.10 3 161 1.4E-38 T 12-10-2018 AMJ96_CH01057 e060c264b7a50b6987480400a6095230 174 SUPERFAMILY SSF53850 4 168 2.17E-23 T 12-10-2018 AMJ96_CH01057 e060c264b7a50b6987480400a6095230 174 Pfam PF03466 LysR substrate binding domain 8 164 5.1E-18 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PA00138 0ab2b198a6ea3a63b0b0ac9c6cb621ef 160 Gene3D G3DSA:3.90.79.10 24 158 5.1E-22 T 12-10-2018 AMJ96_PA00138 0ab2b198a6ea3a63b0b0ac9c6cb621ef 160 SUPERFAMILY SSF55811 28 156 3.25E-18 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_PA00138 0ab2b198a6ea3a63b0b0ac9c6cb621ef 160 Pfam PF00293 NUDIX domain 28 152 6.1E-10 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMJ96_CH00971 3fcb89803c4ccf4b6157fb89b7aa27eb 262 Gene3D G3DSA:2.60.40.1880 123 262 6.3E-26 T 12-10-2018 IPR038696 Invasion protein B superfamily AMJ96_CH00971 3fcb89803c4ccf4b6157fb89b7aa27eb 262 Pfam PF06776 Invasion associated locus B (IalB) protein 128 261 7.8E-37 T 12-10-2018 IPR010642 Invasion protein B AMJ96_PC00381 8acfc2ee2b6a377210c52041ed8e6b66 664 SUPERFAMILY SSF53448 105 387 3.0E-50 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_PC00381 8acfc2ee2b6a377210c52041ed8e6b66 664 Gene3D G3DSA:3.90.550.10 109 326 1.7E-82 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_PC00381 8acfc2ee2b6a377210c52041ed8e6b66 664 Pfam PF00535 Glycosyl transferase family 2 119 288 1.1E-29 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_PA00144 dd814a74b4936d063910c0109b25515e 446 Gene3D G3DSA:1.20.210.10 1 439 4.1E-128 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PA00144 dd814a74b4936d063910c0109b25515e 446 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 8 416 2.5E-80 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PA00144 dd814a74b4936d063910c0109b25515e 446 SUPERFAMILY SSF81442 3 432 4.45E-92 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PA00144 dd814a74b4936d063910c0109b25515e 446 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 182 238 - T 12-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH03890 ec8b4aa95aa9ea107cdd24ca98a206ad 302 SMART SM00880 15 278 1.2E-30 T 12-10-2018 IPR007899 CHAD domain AMJ96_CH03890 ec8b4aa95aa9ea107cdd24ca98a206ad 302 Pfam PF05235 CHAD domain 35 243 3.3E-27 T 12-10-2018 IPR007899 CHAD domain AMJ96_CH03890 ec8b4aa95aa9ea107cdd24ca98a206ad 302 Gene3D G3DSA:1.40.20.10 1 296 1.6E-19 T 12-10-2018 IPR038186 CHAD domain superfamily AMJ96_CH01479 e68b23549e1639819a47e6954c720b02 496 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 21 473 44.552 T 12-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AMJ96_CH01479 e68b23549e1639819a47e6954c720b02 496 Pfam PF00156 Phosphoribosyl transferase domain 300 398 3.1E-9 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMJ96_CH01479 e68b23549e1639819a47e6954c720b02 496 Gene3D G3DSA:3.40.50.2020 286 451 2.3E-145 T 12-10-2018 AMJ96_CH01479 e68b23549e1639819a47e6954c720b02 496 Gene3D G3DSA:3.60.20.10 22 475 2.3E-145 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMJ96_CH01479 e68b23549e1639819a47e6954c720b02 496 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 22 474 7.0E-145 T 12-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AMJ96_CH01479 e68b23549e1639819a47e6954c720b02 496 SUPERFAMILY SSF56235 22 239 2.32E-64 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AMJ96_CH01479 e68b23549e1639819a47e6954c720b02 496 Pfam PF13537 Glutamine amidotransferase domain 102 219 1.0E-18 T 12-10-2018 IPR017932 Glutamine amidotransferase type 2 domain AMJ96_CH01479 e68b23549e1639819a47e6954c720b02 496 SUPERFAMILY SSF53271 262 481 4.72E-74 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like AMJ96_CH01479 e68b23549e1639819a47e6954c720b02 496 PIRSF PIRSF000485 18 488 1.7E-159 T 12-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AMJ96_PB00147 206d9e2f3d55d0dcba5216e6ed81bc03 249 SUPERFAMILY SSF51735 32 246 2.76E-16 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PB00147 206d9e2f3d55d0dcba5216e6ed81bc03 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 39 215 6.9E-11 T 12-10-2018 AMJ96_PB00147 206d9e2f3d55d0dcba5216e6ed81bc03 249 Gene3D G3DSA:3.40.50.720 31 248 1.7E-15 T 12-10-2018 AMJ96_CH02277 186eeffba4f8999e10475f37a66a2d81 470 SUPERFAMILY SSF54631 157 291 9.35E-30 T 12-10-2018 AMJ96_CH02277 186eeffba4f8999e10475f37a66a2d81 470 Gene3D G3DSA:1.10.357.20 293 468 2.0E-50 T 12-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain AMJ96_CH02277 186eeffba4f8999e10475f37a66a2d81 470 Gene3D G3DSA:3.10.580.10 153 280 6.8E-40 T 12-10-2018 AMJ96_CH02277 186eeffba4f8999e10475f37a66a2d81 470 TIGRFAM TIGR00400 mgtE: magnesium transporter 50 469 9.5E-94 T 12-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 AMJ96_CH02277 186eeffba4f8999e10475f37a66a2d81 470 SMART SM00116 232 276 3.6E-5 T 12-10-2018 IPR000644 CBS domain AMJ96_CH02277 186eeffba4f8999e10475f37a66a2d81 470 SMART SM00116 164 217 14.0 T 12-10-2018 IPR000644 CBS domain AMJ96_CH02277 186eeffba4f8999e10475f37a66a2d81 470 Pfam PF00571 CBS domain 222 276 3.5E-8 T 12-10-2018 IPR000644 CBS domain AMJ96_CH02277 186eeffba4f8999e10475f37a66a2d81 470 Pfam PF00571 CBS domain 161 214 1.3E-4 T 12-10-2018 IPR000644 CBS domain AMJ96_CH02277 186eeffba4f8999e10475f37a66a2d81 470 Pfam PF01769 Divalent cation transporter 340 461 4.2E-26 T 12-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 AMJ96_CH02277 186eeffba4f8999e10475f37a66a2d81 470 SUPERFAMILY SSF161093 296 468 6.93E-50 T 12-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 AMJ96_CH02277 186eeffba4f8999e10475f37a66a2d81 470 Gene3D G3DSA:1.25.60.10 30 152 3.6E-16 T 12-10-2018 IPR038076 MgtE, N-terminal domain superfamily AMJ96_CH02277 186eeffba4f8999e10475f37a66a2d81 470 Pfam PF03448 MgtE intracellular N domain 54 154 1.1E-23 T 12-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain AMJ96_CH02277 186eeffba4f8999e10475f37a66a2d81 470 SMART SM00924 54 157 1.6E-31 T 12-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain AMJ96_CH02277 186eeffba4f8999e10475f37a66a2d81 470 SUPERFAMILY SSF158791 29 154 7.72E-28 T 12-10-2018 AMJ96_CH02876 ac0f1c3d59a766ee9ed65594e1e8fef9 127 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 121 9.9E-6 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AMJ96_CH02876 ac0f1c3d59a766ee9ed65594e1e8fef9 127 SUPERFAMILY SSF54593 8 125 1.1E-22 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH02876 ac0f1c3d59a766ee9ed65594e1e8fef9 127 Gene3D G3DSA:3.10.180.10 4 126 7.2E-20 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH04040 8ce56d30b6320ebe4075ae7a53ed3637 64 Pfam PF13627 Prokaryotic lipoprotein-attachment site 12 34 9.4E-8 T 12-10-2018 IPR032831 Prokaryotic lipoprotein-attachment site AMJ96_CH00521 c72f5d1e9494f0a2208a31894d7278fa 319 SUPERFAMILY SSF51412 7 294 8.97E-55 T 12-10-2018 AMJ96_CH00521 c72f5d1e9494f0a2208a31894d7278fa 319 Pfam PF03060 Nitronate monooxygenase 91 306 7.5E-19 T 12-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 AMJ96_CH00521 c72f5d1e9494f0a2208a31894d7278fa 319 Gene3D G3DSA:3.20.20.70 9 318 2.9E-60 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_PA00255 235b44001355f743080fbaa77feb9af9 400 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 236 249 - T 12-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AMJ96_PA00255 235b44001355f743080fbaa77feb9af9 400 Gene3D G3DSA:3.90.1150.10 26 392 3.3E-131 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_PA00255 235b44001355f743080fbaa77feb9af9 400 SUPERFAMILY SSF53383 1 398 9.38E-114 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_PA00255 235b44001355f743080fbaa77feb9af9 400 Gene3D G3DSA:3.40.640.10 63 286 3.3E-131 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_PA00255 235b44001355f743080fbaa77feb9af9 400 Pfam PF00155 Aminotransferase class I and II 32 392 5.7E-75 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AMJ96_CH04075 bcc0bbfc0f84d998f1045138f436facc 74 SUPERFAMILY SSF64307 5 73 2.35E-22 T 12-10-2018 IPR036868 TusA-like domain superfamily AMJ96_CH04075 bcc0bbfc0f84d998f1045138f436facc 74 Pfam PF01206 Sulfurtransferase TusA 6 73 2.2E-22 T 12-10-2018 IPR001455 TusA-like domain AMJ96_CH04075 bcc0bbfc0f84d998f1045138f436facc 74 Gene3D G3DSA:3.30.110.40 3 74 7.1E-26 T 12-10-2018 IPR036868 TusA-like domain superfamily AMJ96_CH02722 2f750d53defcb02d0c48c6d03d5de91e 128 Pfam PF00583 Acetyltransferase (GNAT) family 15 117 1.5E-13 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH02722 2f750d53defcb02d0c48c6d03d5de91e 128 Gene3D G3DSA:3.40.630.30 3 123 1.5E-23 T 12-10-2018 AMJ96_CH02722 2f750d53defcb02d0c48c6d03d5de91e 128 SUPERFAMILY SSF55729 12 121 6.65E-24 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH04354 6a64a35f37667b597d7cf91c6f656c4e 584 SUPERFAMILY SSF53649 112 579 1.89E-112 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 AMJ96_CH04354 6a64a35f37667b597d7cf91c6f656c4e 584 PRINTS PR00113 Alkaline phosphatase signature 357 386 4.2E-35 T 12-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AMJ96_CH04354 6a64a35f37667b597d7cf91c6f656c4e 584 PRINTS PR00113 Alkaline phosphatase signature 181 196 4.2E-35 T 12-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AMJ96_CH04354 6a64a35f37667b597d7cf91c6f656c4e 584 PRINTS PR00113 Alkaline phosphatase signature 270 280 4.2E-35 T 12-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AMJ96_CH04354 6a64a35f37667b597d7cf91c6f656c4e 584 PRINTS PR00113 Alkaline phosphatase signature 226 246 4.2E-35 T 12-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AMJ96_CH04354 6a64a35f37667b597d7cf91c6f656c4e 584 PRINTS PR00113 Alkaline phosphatase signature 126 146 4.2E-35 T 12-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AMJ96_CH04354 6a64a35f37667b597d7cf91c6f656c4e 584 SMART SM00098 127 581 3.1E-41 T 12-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AMJ96_CH04354 6a64a35f37667b597d7cf91c6f656c4e 584 Pfam PF00245 Alkaline phosphatase 126 574 7.3E-76 T 12-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AMJ96_CH02983 e1a313457f75949c3ab1002908ecf620 424 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 418 36.312 T 12-10-2018 IPR006698 Uncharacterised protein family UPF0229 AMJ96_CH02983 e1a313457f75949c3ab1002908ecf620 424 Pfam PF04285 Protein of unknown function (DUF444) 2 415 2.9E-154 T 12-10-2018 IPR006698 Uncharacterised protein family UPF0229 AMJ96_CH02455 4378e127801c37bbba57a2c74dd21f85 356 Pfam PF01032 FecCD transport family 36 349 1.1E-81 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 AMJ96_CH02455 4378e127801c37bbba57a2c74dd21f85 356 SUPERFAMILY SSF81345 17 349 1.96E-76 T 12-10-2018 IPR037294 ABC transporter, BtuC-like AMJ96_CH02455 4378e127801c37bbba57a2c74dd21f85 356 Gene3D G3DSA:1.10.3470.10 22 355 1.5E-93 T 12-10-2018 IPR037294 ABC transporter, BtuC-like AMJ96_CH02483 6257745dbf27e6c60200b83b89f5112c 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 271 2.6E-19 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02483 6257745dbf27e6c60200b83b89f5112c 276 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 61 166 4.8E-22 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_CH02483 6257745dbf27e6c60200b83b89f5112c 276 Gene3D G3DSA:1.10.3720.10 49 273 4.1E-48 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02483 6257745dbf27e6c60200b83b89f5112c 276 SUPERFAMILY SSF161098 60 257 8.11E-40 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH04226 802a6d2e6184ed8179aa3843767d7e96 228 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 23 211 8.2E-24 T 12-10-2018 IPR003111 Lon, substrate-binding domain AMJ96_CH04226 802a6d2e6184ed8179aa3843767d7e96 228 SMART SM00464 22 214 2.7E-11 T 12-10-2018 IPR003111 Lon, substrate-binding domain AMJ96_CH04226 802a6d2e6184ed8179aa3843767d7e96 228 Gene3D G3DSA:2.30.130.40 17 130 8.2E-28 T 12-10-2018 AMJ96_CH04226 802a6d2e6184ed8179aa3843767d7e96 228 SUPERFAMILY SSF88697 23 211 5.47E-48 T 12-10-2018 IPR015947 PUA-like superfamily AMJ96_CH01398 02cb8940a6ca26809ac8a485f39b6001 439 Pfam PF04932 O-Antigen ligase 207 350 5.0E-8 T 12-10-2018 IPR007016 O-antigen ligase-related AMJ96_CH01444 b6f32534ded838f537c3e8c9a0635457 171 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 35 170 1.7E-40 T 12-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AMJ96_CH01444 b6f32534ded838f537c3e8c9a0635457 171 SUPERFAMILY SSF49329 27 171 1.57E-41 T 12-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AMJ96_CH01444 b6f32534ded838f537c3e8c9a0635457 171 Gene3D G3DSA:2.60.40.200 25 171 3.7E-46 T 12-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AMJ96_CH01444 b6f32534ded838f537c3e8c9a0635457 171 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 159 170 - T 12-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AMJ96_PC00138 70408cca9a8bb14f4cc1ea7108f8fe17 534 SUPERFAMILY SSF101898 45 114 4.18E-6 T 12-10-2018 AMJ96_PC00138 70408cca9a8bb14f4cc1ea7108f8fe17 534 Gene3D G3DSA:3.90.1720.10 387 504 3.7E-6 T 12-10-2018 AMJ96_PC00270 07496ad4443c1dc3a30720245a34cccd 338 Pfam PF02530 Porin subfamily 24 323 9.3E-78 T 12-10-2018 IPR003684 Porin, alpha proteobacteria type GO:0015288|GO:0016020|GO:0055085 AMJ96_PC00270 07496ad4443c1dc3a30720245a34cccd 338 SUPERFAMILY SSF56935 55 326 7.33E-19 T 12-10-2018 AMJ96_PC00270 07496ad4443c1dc3a30720245a34cccd 338 Gene3D G3DSA:2.40.160.10 75 330 4.1E-5 T 12-10-2018 IPR023614 Porin domain superfamily AMJ96_CH01927 f8377599f0190e2516dbbad84dc08042 146 Pfam PF09923 Uncharacterized protein conserved in bacteria (DUF2155) 38 129 3.0E-36 T 12-10-2018 IPR019225 Protein of unknown function DUF2155 AMJ96_CH00839 7dd7f6cdef9fd30919628766809aef95 234 Gene3D G3DSA:3.40.50.1000 8 211 8.6E-84 T 12-10-2018 IPR023214 HAD superfamily AMJ96_CH00839 7dd7f6cdef9fd30919628766809aef95 234 Gene3D G3DSA:1.10.150.240 21 101 8.6E-84 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 AMJ96_CH00839 7dd7f6cdef9fd30919628766809aef95 234 SUPERFAMILY SSF56784 8 232 4.66E-31 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_CH00839 7dd7f6cdef9fd30919628766809aef95 234 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 193 1.5E-9 T 12-10-2018 AMJ96_PB00027 6eba22834262d6e14065aad26e829608 86 Pfam PF06169 Protein of unknown function (DUF982) 15 84 2.7E-15 T 12-10-2018 IPR010385 Protein of unknown function DUF982 AMJ96_CH02527 4c8a20bfebe1ae13882c4317ab5e8a2e 410 SUPERFAMILY SSF53850 22 406 5.72E-44 T 12-10-2018 AMJ96_CH02527 4c8a20bfebe1ae13882c4317ab5e8a2e 410 Gene3D G3DSA:3.40.190.10 25 367 2.0E-119 T 12-10-2018 AMJ96_CH02527 4c8a20bfebe1ae13882c4317ab5e8a2e 410 Pfam PF13416 Bacterial extracellular solute-binding protein 72 347 4.4E-23 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH02527 4c8a20bfebe1ae13882c4317ab5e8a2e 410 Gene3D G3DSA:3.40.190.10 141 391 2.0E-119 T 12-10-2018 AMJ96_CH01009 083a6f5cfc59205fff3da62e404950bb 228 Pfam PF12840 Helix-turn-helix domain 9 68 2.3E-13 T 12-10-2018 AMJ96_CH01009 083a6f5cfc59205fff3da62e404950bb 228 SUPERFAMILY SSF46785 5 119 4.76E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01009 083a6f5cfc59205fff3da62e404950bb 228 Gene3D G3DSA:1.10.10.10 2 95 6.2E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01009 083a6f5cfc59205fff3da62e404950bb 228 SMART SM00418 9 88 4.0E-14 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH01905 49c111fdae56eb1db1c058ed45f69af2 453 SUPERFAMILY SSF48452 66 230 3.56E-8 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01905 49c111fdae56eb1db1c058ed45f69af2 453 Gene3D G3DSA:1.25.40.10 60 233 7.0E-13 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_PD00617 2205d4cc02afa9fd4c730f654640b641 342 Gene3D G3DSA:3.40.50.720 113 307 6.9E-78 T 12-10-2018 AMJ96_PD00617 2205d4cc02afa9fd4c730f654640b641 342 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 240 256 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AMJ96_PD00617 2205d4cc02afa9fd4c730f654640b641 342 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 122 300 5.0E-52 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AMJ96_PD00617 2205d4cc02afa9fd4c730f654640b641 342 SUPERFAMILY SSF52283 18 168 2.61E-5 T 12-10-2018 AMJ96_PD00617 2205d4cc02afa9fd4c730f654640b641 342 Gene3D G3DSA:3.40.50.720 41 330 6.9E-78 T 12-10-2018 AMJ96_PD00617 2205d4cc02afa9fd4c730f654640b641 342 SUPERFAMILY SSF51735 115 300 1.42E-50 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH04042 276f70d2484ecd1bcd13b6bb542be447 889 TIGRFAM TIGR02302 aProt_lowcomp: TIGR02302 family protein 25 888 0.0 T 12-10-2018 IPR012683 Conserved hypothetical protein CHP02302, transmembrane AMJ96_CH04042 276f70d2484ecd1bcd13b6bb542be447 889 Pfam PF13779 Domain of unknown function (DUF4175) 36 887 1.2E-294 T 12-10-2018 IPR012683 Conserved hypothetical protein CHP02302, transmembrane AMJ96_CH04261 6acef47657bcb2fb0f555ef48e1f4e74 304 Gene3D G3DSA:1.10.600.10 2 304 6.4E-107 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMJ96_CH04261 6acef47657bcb2fb0f555ef48e1f4e74 304 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 91 107 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site AMJ96_CH04261 6acef47657bcb2fb0f555ef48e1f4e74 304 SUPERFAMILY SSF48576 37 293 9.25E-80 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily AMJ96_CH04261 6acef47657bcb2fb0f555ef48e1f4e74 304 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 223 235 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site AMJ96_CH04261 6acef47657bcb2fb0f555ef48e1f4e74 304 Pfam PF00348 Polyprenyl synthetase 41 273 2.4E-55 T 12-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 AMJ96_CH02995 eca38c6d84d1328a083cdf443416f87a 292 SUPERFAMILY SSF53335 44 288 1.05E-40 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH02995 eca38c6d84d1328a083cdf443416f87a 292 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 291 29.482 T 12-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 AMJ96_CH02995 eca38c6d84d1328a083cdf443416f87a 292 PIRSF PIRSF000401 6 292 5.4E-65 T 12-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 AMJ96_CH02995 eca38c6d84d1328a083cdf443416f87a 292 Gene3D G3DSA:3.40.50.150 96 291 7.3E-49 T 12-10-2018 AMJ96_CH02995 eca38c6d84d1328a083cdf443416f87a 292 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 5 291 8.3E-66 T 12-10-2018 AMJ96_PD00649 87b7418116214b2cf5b0c45cfc29afd0 283 SUPERFAMILY SSF161098 29 281 1.03E-54 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00649 87b7418116214b2cf5b0c45cfc29afd0 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 270 8.5E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00649 87b7418116214b2cf5b0c45cfc29afd0 283 Gene3D G3DSA:1.10.3720.10 25 282 2.4E-53 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03301 e70c0c20f572a739980305b0f5653a8d 242 Gene3D G3DSA:3.40.50.150 16 241 3.6E-75 T 12-10-2018 AMJ96_CH03301 e70c0c20f572a739980305b0f5653a8d 242 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 118 238 2.2E-37 T 12-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 AMJ96_CH03394 553b1f1e372482c3f6e877a3232d8018 326 Gene3D G3DSA:3.40.50.720 3 300 4.5E-78 T 12-10-2018 AMJ96_CH03394 553b1f1e372482c3f6e877a3232d8018 326 SUPERFAMILY SSF51735 1 316 1.04E-49 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03394 553b1f1e372482c3f6e877a3232d8018 326 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 251 3.6E-17 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_CH03394 553b1f1e372482c3f6e877a3232d8018 326 Gene3D G3DSA:3.90.25.60 171 309 4.5E-78 T 12-10-2018 AMJ96_CH02491 313ce1f2ede5073ba25239fb641e21ac 156 Pfam PF08818 Domain of unknown function (DU1801) 57 148 1.4E-16 T 12-10-2018 IPR014922 Domain of unknown function DUF1801 AMJ96_CH02491 313ce1f2ede5073ba25239fb641e21ac 156 SUPERFAMILY SSF159888 43 154 4.58E-30 T 12-10-2018 AMJ96_CH00139 0ca4d03797507b616e9b9cf986ace129 188 Pfam PF00034 Cytochrome c 72 173 1.2E-7 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00139 0ca4d03797507b616e9b9cf986ace129 188 Gene3D G3DSA:1.10.760.10 30 172 6.3E-42 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_CH00139 0ca4d03797507b616e9b9cf986ace129 188 SUPERFAMILY SSF46626 69 181 1.25E-32 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_CH00139 0ca4d03797507b616e9b9cf986ace129 188 PRINTS PR00604 Class IA and IB cytochrome C signature 147 157 2.4E-11 T 12-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00139 0ca4d03797507b616e9b9cf986ace129 188 PRINTS PR00604 Class IA and IB cytochrome C signature 128 144 2.4E-11 T 12-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00139 0ca4d03797507b616e9b9cf986ace129 188 PRINTS PR00604 Class IA and IB cytochrome C signature 81 88 2.4E-11 T 12-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00139 0ca4d03797507b616e9b9cf986ace129 188 PRINTS PR00604 Class IA and IB cytochrome C signature 164 172 2.4E-11 T 12-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00139 0ca4d03797507b616e9b9cf986ace129 188 PRINTS PR00604 Class IA and IB cytochrome C signature 94 109 2.4E-11 T 12-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PA00090 4ea4b7b482be052478cf94ac5d98bbcf 414 SUPERFAMILY SSF51230 4 89 1.19E-23 T 12-10-2018 IPR011053 Single hybrid motif AMJ96_PA00090 4ea4b7b482be052478cf94ac5d98bbcf 414 Pfam PF02817 e3 binding domain 127 162 8.1E-14 T 12-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 AMJ96_PA00090 4ea4b7b482be052478cf94ac5d98bbcf 414 Pfam PF00364 Biotin-requiring enzyme 6 77 3.2E-17 T 12-10-2018 IPR000089 Biotin/lipoyl attachment AMJ96_PA00090 4ea4b7b482be052478cf94ac5d98bbcf 414 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AMJ96_PA00090 4ea4b7b482be052478cf94ac5d98bbcf 414 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 183 411 1.9E-76 T 12-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 AMJ96_PA00090 4ea4b7b482be052478cf94ac5d98bbcf 414 Gene3D G3DSA:3.30.559.10 173 412 3.7E-83 T 12-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 AMJ96_PA00090 4ea4b7b482be052478cf94ac5d98bbcf 414 SUPERFAMILY SSF47005 125 165 1.11E-11 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AMJ96_PA00090 4ea4b7b482be052478cf94ac5d98bbcf 414 SUPERFAMILY SSF52777 179 411 5.34E-79 T 12-10-2018 AMJ96_PA00090 4ea4b7b482be052478cf94ac5d98bbcf 414 Gene3D G3DSA:2.40.50.100 4 84 1.1E-21 T 12-10-2018 AMJ96_PA00090 4ea4b7b482be052478cf94ac5d98bbcf 414 Gene3D G3DSA:4.10.320.10 110 169 2.7E-18 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 AMJ96_CH00560 a3285ce368a81c78fba43d8a3aac15af 211 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 27 198 1.2E-29 T 12-10-2018 IPR003740 Uncharacterised membrane protein YitT AMJ96_PA00216 65851712cbf0e42ed7e6a2a5dc6e7dbb 259 SUPERFAMILY SSF52540 9 253 7.99E-72 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00216 65851712cbf0e42ed7e6a2a5dc6e7dbb 259 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PA00216 65851712cbf0e42ed7e6a2a5dc6e7dbb 259 PIRSF PIRSF039085 5 259 7.2E-114 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMJ96_PA00216 65851712cbf0e42ed7e6a2a5dc6e7dbb 259 Gene3D G3DSA:3.40.50.300 5 257 4.0E-71 T 12-10-2018 AMJ96_PA00216 65851712cbf0e42ed7e6a2a5dc6e7dbb 259 SMART SM00382 33 231 8.1E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00216 65851712cbf0e42ed7e6a2a5dc6e7dbb 259 Pfam PF00005 ABC transporter 24 183 4.4E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00015 f89e6c18de0321fd1a3f4cfcac7aefb7 138 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 11 124 1.2E-19 T 12-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AMJ96_PD00015 f89e6c18de0321fd1a3f4cfcac7aefb7 138 SUPERFAMILY SSF54637 9 136 1.5E-34 T 12-10-2018 IPR029069 HotDog domain superfamily AMJ96_PD00015 f89e6c18de0321fd1a3f4cfcac7aefb7 138 PIRSF PIRSF003230 4 138 7.6E-22 T 12-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AMJ96_PD00015 f89e6c18de0321fd1a3f4cfcac7aefb7 138 Pfam PF13279 Thioesterase-like superfamily 13 134 1.1E-15 T 12-10-2018 AMJ96_PD00015 f89e6c18de0321fd1a3f4cfcac7aefb7 138 Gene3D G3DSA:3.10.129.10 4 137 6.7E-35 T 12-10-2018 AMJ96_CH03144 e2715e4fcbe754c5ea34bc7ef948fdfe 388 Gene3D G3DSA:1.20.1250.20 3 373 6.1E-44 T 12-10-2018 AMJ96_CH03144 e2715e4fcbe754c5ea34bc7ef948fdfe 388 Pfam PF07690 Major Facilitator Superfamily 8 309 2.0E-35 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH03144 e2715e4fcbe754c5ea34bc7ef948fdfe 388 SUPERFAMILY SSF103473 3 379 1.96E-50 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_PC00323 a3cec4d73155dda1d336a11530d73463 534 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 15 61 5.7E-11 T 12-10-2018 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal AMJ96_CH03151 1077e6dd3299856aa97ae0a4dca78b88 365 Gene3D G3DSA:1.20.1420.30 80 354 1.8E-10 T 12-10-2018 AMJ96_CH03151 1077e6dd3299856aa97ae0a4dca78b88 365 Gene3D G3DSA:1.20.58.1130 205 252 1.8E-10 T 12-10-2018 AMJ96_CH03151 1077e6dd3299856aa97ae0a4dca78b88 365 Pfam PF01699 Sodium/calcium exchanger protein 220 360 6.9E-7 T 12-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 AMJ96_CH03151 1077e6dd3299856aa97ae0a4dca78b88 365 Pfam PF01699 Sodium/calcium exchanger protein 40 186 3.6E-12 T 12-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 AMJ96_CH03602 9332392fc8f451147da7015a58cdd9db 233 Pfam PF02397 Bacterial sugar transferase 36 227 2.4E-62 T 12-10-2018 IPR003362 Bacterial sugar transferase AMJ96_CH00283 15c3f0de592c12a7dc8f1c274d175df8 320 SUPERFAMILY SSF51430 1 313 3.67E-93 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH00283 15c3f0de592c12a7dc8f1c274d175df8 320 PRINTS PR00069 Aldo-keto reductase signature 110 128 9.1E-10 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH00283 15c3f0de592c12a7dc8f1c274d175df8 320 PRINTS PR00069 Aldo-keto reductase signature 141 158 9.1E-10 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AMJ96_CH00283 15c3f0de592c12a7dc8f1c274d175df8 320 Pfam PF00248 Aldo/keto reductase family 15 313 6.2E-69 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_CH00283 15c3f0de592c12a7dc8f1c274d175df8 320 Gene3D G3DSA:3.20.20.100 1 319 1.2E-98 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH00551 57463713acf6a02f7733a22acb2e3c47 223 SUPERFAMILY SSF51306 97 220 4.19E-24 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily AMJ96_CH00551 57463713acf6a02f7733a22acb2e3c47 223 Pfam PF00717 Peptidase S24-like 141 207 1.1E-13 T 12-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AMJ96_CH00551 57463713acf6a02f7733a22acb2e3c47 223 Gene3D G3DSA:2.10.109.10 94 222 3.8E-16 T 12-10-2018 AMJ96_PB00401 3bf4171076291d4cf26e7439c871cd46 428 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 2 328 5.7E-100 T 12-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase AMJ96_PB00401 3bf4171076291d4cf26e7439c871cd46 428 SUPERFAMILY SSF51905 2 222 2.95E-18 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PB00401 3bf4171076291d4cf26e7439c871cd46 428 Gene3D G3DSA:3.50.50.60 1 408 1.7E-109 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PB00401 3bf4171076291d4cf26e7439c871cd46 428 SUPERFAMILY SSF51905 169 355 1.17E-5 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00382 196a18d33ba8d4e23353421127740483 361 SUPERFAMILY SSF111369 48 270 4.32E-21 T 12-10-2018 AMJ96_PD00382 196a18d33ba8d4e23353421127740483 361 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 62 269 1.1E-17 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMJ96_PD00382 196a18d33ba8d4e23353421127740483 361 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 37 355 1.4E-74 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMJ96_PD00382 196a18d33ba8d4e23353421127740483 361 Gene3D G3DSA:1.10.287.470 91 163 4.8E-65 T 12-10-2018 AMJ96_PD00382 196a18d33ba8d4e23353421127740483 361 Gene3D G3DSA:2.40.50.100 57 203 4.8E-65 T 12-10-2018 AMJ96_PD00382 196a18d33ba8d4e23353421127740483 361 Gene3D G3DSA:2.40.420.20 37 353 4.8E-65 T 12-10-2018 AMJ96_PD00382 196a18d33ba8d4e23353421127740483 361 Gene3D G3DSA:2.40.30.170 43 277 4.8E-65 T 12-10-2018 AMJ96_CH01016 39361adacae62f5cade7847c3c3f644d 181 Pfam PF05258 Protein of unknown function (DUF721) 29 126 5.6E-20 T 12-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 AMJ96_CH01016 39361adacae62f5cade7847c3c3f644d 181 PIRSF PIRSF032064 6 181 9.1E-71 T 12-10-2018 IPR010593 Protein of unknown function DUF1159 AMJ96_PA00158 5fe9591b548c59d0b41c70a074923669 241 Gene3D G3DSA:3.40.50.2300 2 129 4.8E-35 T 12-10-2018 AMJ96_PA00158 5fe9591b548c59d0b41c70a074923669 241 Pfam PF00486 Transcriptional regulatory protein, C terminal 160 236 1.1E-21 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_PA00158 5fe9591b548c59d0b41c70a074923669 241 Gene3D G3DSA:1.10.10.10 130 240 2.7E-34 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PA00158 5fe9591b548c59d0b41c70a074923669 241 SUPERFAMILY SSF52172 6 131 3.27E-39 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PA00158 5fe9591b548c59d0b41c70a074923669 241 SMART SM00448 8 119 1.2E-39 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PA00158 5fe9591b548c59d0b41c70a074923669 241 SUPERFAMILY SSF46894 137 237 1.39E-25 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_PA00158 5fe9591b548c59d0b41c70a074923669 241 Pfam PF00072 Response regulator receiver domain 11 119 7.3E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PA00158 5fe9591b548c59d0b41c70a074923669 241 SMART SM00862 160 236 2.8E-22 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH02957 439258a8dc8f2142d20ed66db45a94ae 226 Pfam PF01810 LysE type translocator 37 224 3.1E-28 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMJ96_CH01491 03e269f4133999ab753e0e6877651c2a 152 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 95 21.263 T 12-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 AMJ96_CH01491 03e269f4133999ab753e0e6877651c2a 152 Pfam PF01250 Ribosomal protein S6 4 91 2.5E-30 T 12-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01491 03e269f4133999ab753e0e6877651c2a 152 SUPERFAMILY SSF54995 1 104 6.41E-35 T 12-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01491 03e269f4133999ab753e0e6877651c2a 152 Gene3D G3DSA:3.30.70.60 1 101 5.1E-30 T 12-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 AMJ96_CH01491 03e269f4133999ab753e0e6877651c2a 152 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 4.0E-27 T 12-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_PB00063 4325e8ec99444b6ff322ec4a1fd7007e 279 SUPERFAMILY SSF51735 7 266 2.26E-53 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PB00063 4325e8ec99444b6ff322ec4a1fd7007e 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.6E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00063 4325e8ec99444b6ff322ec4a1fd7007e 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.6E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00063 4325e8ec99444b6ff322ec4a1fd7007e 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.6E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00063 4325e8ec99444b6ff322ec4a1fd7007e 279 Gene3D G3DSA:3.40.50.720 6 256 3.8E-56 T 12-10-2018 AMJ96_PB00063 4325e8ec99444b6ff322ec4a1fd7007e 279 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_PB00063 4325e8ec99444b6ff322ec4a1fd7007e 279 Pfam PF00106 short chain dehydrogenase 10 199 6.0E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00063 4325e8ec99444b6ff322ec4a1fd7007e 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.1E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00063 4325e8ec99444b6ff322ec4a1fd7007e 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.1E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00063 4325e8ec99444b6ff322ec4a1fd7007e 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 1.1E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00063 4325e8ec99444b6ff322ec4a1fd7007e 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.1E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00063 4325e8ec99444b6ff322ec4a1fd7007e 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.1E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00162 9ad3f53f9eca0ebd02522845d6214bd1 266 Pfam PF00106 short chain dehydrogenase 10 196 2.5E-46 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00162 9ad3f53f9eca0ebd02522845d6214bd1 266 SUPERFAMILY SSF51735 8 252 7.94E-56 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00162 9ad3f53f9eca0ebd02522845d6214bd1 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 3.1E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00162 9ad3f53f9eca0ebd02522845d6214bd1 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 3.1E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00162 9ad3f53f9eca0ebd02522845d6214bd1 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 3.1E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00162 9ad3f53f9eca0ebd02522845d6214bd1 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 3.1E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00162 9ad3f53f9eca0ebd02522845d6214bd1 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 3.1E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00162 9ad3f53f9eca0ebd02522845d6214bd1 266 PIRSF PIRSF000126 1 262 3.5E-52 T 12-10-2018 AMJ96_PD00162 9ad3f53f9eca0ebd02522845d6214bd1 266 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_PD00162 9ad3f53f9eca0ebd02522845d6214bd1 266 Gene3D G3DSA:3.40.50.720 8 261 9.8E-57 T 12-10-2018 AMJ96_PD00162 9ad3f53f9eca0ebd02522845d6214bd1 266 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 191 0.0014 T 12-10-2018 AMJ96_CH03552 4467345009fa71308061d778b0987fca 195 PIRSF PIRSF033924 5 195 1.8E-91 T 12-10-2018 IPR008325 Uncharacterised conserved protein UCP033924 AMJ96_CH03552 4467345009fa71308061d778b0987fca 195 Pfam PF06577 Protein of unknown function (DUF1134) 37 195 4.9E-73 T 12-10-2018 IPR008325 Uncharacterised conserved protein UCP033924 AMJ96_PC00386 84af8ab385ae738cdcc2b0f28a901721 385 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 1 122 6.2E-17 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_PC00386 84af8ab385ae738cdcc2b0f28a901721 385 SUPERFAMILY SSF51735 2 151 5.84E-31 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00386 84af8ab385ae738cdcc2b0f28a901721 385 Gene3D G3DSA:3.40.50.720 1 132 3.3E-24 T 12-10-2018 AMJ96_PC00386 84af8ab385ae738cdcc2b0f28a901721 385 Gene3D G3DSA:3.30.360.10 133 369 7.6E-28 T 12-10-2018 AMJ96_PC00386 84af8ab385ae738cdcc2b0f28a901721 385 SUPERFAMILY SSF55347 128 295 1.24E-23 T 12-10-2018 AMJ96_PC00386 84af8ab385ae738cdcc2b0f28a901721 385 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 140 205 2.1E-5 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AMJ96_CH04173 0bcda6c4cb6ba565a8409fddc961d8a7 213 Pfam PF01810 LysE type translocator 19 209 4.1E-32 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMJ96_CH04173 0bcda6c4cb6ba565a8409fddc961d8a7 213 PIRSF PIRSF006324 4 212 4.0E-50 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMJ96_PC00201 98cddbf184ada926a02aa8f0d2df9fcc 634 Gene3D G3DSA:3.40.190.10 23 294 2.2E-39 T 12-10-2018 AMJ96_PC00201 98cddbf184ada926a02aa8f0d2df9fcc 634 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 91 526 2.3E-49 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_PC00201 98cddbf184ada926a02aa8f0d2df9fcc 634 Gene3D G3DSA:3.10.105.10 303 588 7.6E-51 T 12-10-2018 AMJ96_PC00201 98cddbf184ada926a02aa8f0d2df9fcc 634 SUPERFAMILY SSF53850 32 618 1.38E-84 T 12-10-2018 AMJ96_CH01166 540142a0e8d69a015be99ed3407bf5f8 765 Gene3D G3DSA:1.10.3810.10 188 379 1.4E-66 T 12-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH01166 540142a0e8d69a015be99ed3407bf5f8 765 SUPERFAMILY SSF56601 338 713 2.29E-97 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMJ96_CH01166 540142a0e8d69a015be99ed3407bf5f8 765 Pfam PF00912 Transglycosylase 192 357 5.4E-61 T 12-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH01166 540142a0e8d69a015be99ed3407bf5f8 765 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 194 710 3.3E-174 T 12-10-2018 AMJ96_CH01166 540142a0e8d69a015be99ed3407bf5f8 765 Pfam PF00905 Penicillin binding protein transpeptidase domain 444 685 1.0E-20 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMJ96_CH01166 540142a0e8d69a015be99ed3407bf5f8 765 Gene3D G3DSA:3.40.710.10 384 746 1.6E-93 T 12-10-2018 AMJ96_CH01166 540142a0e8d69a015be99ed3407bf5f8 765 Pfam PF07886 BA14K-like protein 736 764 1.6E-10 T 12-10-2018 IPR012413 BA14k family GO:0009405 AMJ96_CH01166 540142a0e8d69a015be99ed3407bf5f8 765 SUPERFAMILY SSF53955 173 379 1.04E-68 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily AMJ96_CH02474 4adb353ddb77387a4dba0170c3cf919f 138 Gene3D G3DSA:3.30.300.20 45 138 1.3E-31 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta AMJ96_CH02474 4adb353ddb77387a4dba0170c3cf919f 138 Pfam PF02566 OsmC-like protein 43 135 7.5E-17 T 12-10-2018 IPR003718 OsmC/Ohr family AMJ96_CH02474 4adb353ddb77387a4dba0170c3cf919f 138 SUPERFAMILY SSF82784 5 137 1.57E-37 T 12-10-2018 IPR036102 OsmC/Ohr superfamily AMJ96_CH02474 4adb353ddb77387a4dba0170c3cf919f 138 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 8 137 6.9E-48 T 12-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 AMJ96_CH02474 4adb353ddb77387a4dba0170c3cf919f 138 Gene3D G3DSA:2.20.25.10 1 44 1.7E-19 T 12-10-2018 AMJ96_CH03359 ad8a572dc2d5b256afc35e605e596551 256 Gene3D G3DSA:3.40.50.1010 3 145 1.9E-10 T 12-10-2018 AMJ96_CH03359 ad8a572dc2d5b256afc35e605e596551 256 Gene3D G3DSA:1.10.10.1880 185 256 3.1E-22 T 12-10-2018 AMJ96_CH03359 ad8a572dc2d5b256afc35e605e596551 256 Pfam PF01936 NYN domain 9 141 5.4E-30 T 12-10-2018 IPR021139 NYN domain, limkain-b1-type AMJ96_CH03359 ad8a572dc2d5b256afc35e605e596551 256 Pfam PF12872 OST-HTH/LOTUS domain 183 244 4.5E-13 T 12-10-2018 IPR025605 OST-HTH/LOTUS domain AMJ96_CH01797 25717d17cd3b30ec2b6b1b0b8fdb827d 436 SUPERFAMILY SSF52096 32 129 2.98E-10 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_CH01797 25717d17cd3b30ec2b6b1b0b8fdb827d 436 Gene3D G3DSA:3.90.226.10 36 188 2.1E-11 T 12-10-2018 AMJ96_PD00694 7c5c1b692c69b30bafe3984fbabd8e97 412 Pfam PF01047 MarR family 25 69 7.2E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_PD00694 7c5c1b692c69b30bafe3984fbabd8e97 412 SUPERFAMILY SSF46785 24 81 3.56E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00694 7c5c1b692c69b30bafe3984fbabd8e97 412 Gene3D G3DSA:1.10.10.10 12 88 1.7E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00694 7c5c1b692c69b30bafe3984fbabd8e97 412 SUPERFAMILY SSF53067 93 386 2.22E-34 T 12-10-2018 AMJ96_PD00694 7c5c1b692c69b30bafe3984fbabd8e97 412 Pfam PF00480 ROK family 95 383 3.4E-21 T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 AMJ96_PD00694 7c5c1b692c69b30bafe3984fbabd8e97 412 Gene3D G3DSA:3.30.420.40 93 385 1.7E-40 T 12-10-2018 AMJ96_PD00694 7c5c1b692c69b30bafe3984fbabd8e97 412 Gene3D G3DSA:3.30.420.40 217 368 1.7E-40 T 12-10-2018 AMJ96_PD00384 23aa9c0f2dcb4eeacb12ea2d9d41b0c7 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 1.0E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PD00384 23aa9c0f2dcb4eeacb12ea2d9d41b0c7 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 1.0E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PD00384 23aa9c0f2dcb4eeacb12ea2d9d41b0c7 210 Gene3D G3DSA:1.10.10.60 1 62 1.1E-20 T 12-10-2018 AMJ96_PD00384 23aa9c0f2dcb4eeacb12ea2d9d41b0c7 210 Gene3D G3DSA:1.10.357.10 63 210 1.3E-19 T 12-10-2018 AMJ96_PD00384 23aa9c0f2dcb4eeacb12ea2d9d41b0c7 210 SUPERFAMILY SSF48498 86 207 4.45E-19 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_PD00384 23aa9c0f2dcb4eeacb12ea2d9d41b0c7 210 SUPERFAMILY SSF46689 8 82 1.9E-18 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00384 23aa9c0f2dcb4eeacb12ea2d9d41b0c7 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 8.2E-17 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PD00384 23aa9c0f2dcb4eeacb12ea2d9d41b0c7 210 Pfam PF16859 Bacterial transcriptional repressor C-terminal 86 185 2.1E-8 T 12-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AMJ96_CH02739 3f6691b4c14df701a84bc119135eded1 481 SMART SM00044 258 462 4.7E-11 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH02739 3f6691b4c14df701a84bc119135eded1 481 Gene3D G3DSA:3.30.70.1230 285 480 8.7E-50 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02739 3f6691b4c14df701a84bc119135eded1 481 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 309 443 1.2E-25 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH02739 3f6691b4c14df701a84bc119135eded1 481 SUPERFAMILY SSF55073 307 479 2.51E-42 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03455 3b9cf0620b0023b779314850467de904 370 Pfam PF12698 ABC-2 family transporter protein 36 362 5.7E-38 T 12-10-2018 AMJ96_CH04294 c85065efd5eb6ea2f1fff5fe7fa9979d 83 SUPERFAMILY SSF47336 2 74 1.83E-16 T 12-10-2018 IPR036736 ACP-like superfamily AMJ96_CH04294 c85065efd5eb6ea2f1fff5fe7fa9979d 83 Pfam PF00550 Phosphopantetheine attachment site 4 71 9.6E-10 T 12-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMJ96_CH04294 c85065efd5eb6ea2f1fff5fe7fa9979d 83 Gene3D G3DSA:1.10.1200.10 1 81 5.6E-23 T 12-10-2018 IPR036736 ACP-like superfamily AMJ96_PC00127 794c7c9f2f0183caae5027d010e975d4 230 Gene3D G3DSA:3.40.50.720 1 229 2.1E-45 T 12-10-2018 AMJ96_PC00127 794c7c9f2f0183caae5027d010e975d4 230 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 6 227 7.4E-32 T 12-10-2018 AMJ96_PC00127 794c7c9f2f0183caae5027d010e975d4 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 173 1.3E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00127 794c7c9f2f0183caae5027d010e975d4 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 156 1.3E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00127 794c7c9f2f0183caae5027d010e975d4 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 193 213 1.3E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00127 794c7c9f2f0183caae5027d010e975d4 230 SUPERFAMILY SSF51735 1 228 7.14E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00189 8d9a9cfb88a3aacd1fdd3784ef663b65 637 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 266 320 - T 12-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00189 8d9a9cfb88a3aacd1fdd3784ef663b65 637 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 46 490 3.3E-142 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00189 8d9a9cfb88a3aacd1fdd3784ef663b65 637 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 38 542 4.5E-220 T 12-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 AMJ96_PD00189 8d9a9cfb88a3aacd1fdd3784ef663b65 637 PRINTS PR01165 Cytochrome c oxidase subunit I signature 110 134 2.9E-91 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00189 8d9a9cfb88a3aacd1fdd3784ef663b65 637 PRINTS PR01165 Cytochrome c oxidase subunit I signature 264 285 2.9E-91 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00189 8d9a9cfb88a3aacd1fdd3784ef663b65 637 PRINTS PR01165 Cytochrome c oxidase subunit I signature 36 61 2.9E-91 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00189 8d9a9cfb88a3aacd1fdd3784ef663b65 637 PRINTS PR01165 Cytochrome c oxidase subunit I signature 83 106 2.9E-91 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00189 8d9a9cfb88a3aacd1fdd3784ef663b65 637 PRINTS PR01165 Cytochrome c oxidase subunit I signature 334 355 2.9E-91 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00189 8d9a9cfb88a3aacd1fdd3784ef663b65 637 PRINTS PR01165 Cytochrome c oxidase subunit I signature 447 468 2.9E-91 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00189 8d9a9cfb88a3aacd1fdd3784ef663b65 637 PRINTS PR01165 Cytochrome c oxidase subunit I signature 184 202 2.9E-91 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00189 8d9a9cfb88a3aacd1fdd3784ef663b65 637 PRINTS PR01165 Cytochrome c oxidase subunit I signature 152 164 2.9E-91 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00189 8d9a9cfb88a3aacd1fdd3784ef663b65 637 PRINTS PR01165 Cytochrome c oxidase subunit I signature 397 416 2.9E-91 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00189 8d9a9cfb88a3aacd1fdd3784ef663b65 637 PRINTS PR01165 Cytochrome c oxidase subunit I signature 369 387 2.9E-91 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00189 8d9a9cfb88a3aacd1fdd3784ef663b65 637 PRINTS PR01165 Cytochrome c oxidase subunit I signature 310 325 2.9E-91 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00189 8d9a9cfb88a3aacd1fdd3784ef663b65 637 PRINTS PR01165 Cytochrome c oxidase subunit I signature 213 232 2.9E-91 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00189 8d9a9cfb88a3aacd1fdd3784ef663b65 637 Gene3D G3DSA:1.20.210.10 26 550 1.7E-193 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00189 8d9a9cfb88a3aacd1fdd3784ef663b65 637 SUPERFAMILY SSF81442 36 543 4.19E-168 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PA00030 44d20c194dbfc97a486b2256191e3215 107 SUPERFAMILY SSF54909 1 102 2.32E-34 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_PA00030 44d20c194dbfc97a486b2256191e3215 107 Pfam PF07978 NIPSNAP 3 102 5.9E-35 T 12-10-2018 IPR012577 NIPSNAP AMJ96_PA00030 44d20c194dbfc97a486b2256191e3215 107 Gene3D G3DSA:3.30.70.100 1 103 3.7E-43 T 12-10-2018 AMJ96_PA00287 6e3e8dc4ed172c74f4381f066d3655a6 286 Gene3D G3DSA:3.40.50.720 111 251 2.3E-78 T 12-10-2018 AMJ96_PA00287 6e3e8dc4ed172c74f4381f066d3655a6 286 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 13 100 8.9E-22 T 12-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AMJ96_PA00287 6e3e8dc4ed172c74f4381f066d3655a6 286 SUPERFAMILY SSF51735 113 281 5.02E-35 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PA00287 6e3e8dc4ed172c74f4381f066d3655a6 286 SUPERFAMILY SSF53223 8 112 1.04E-24 T 12-10-2018 AMJ96_PA00287 6e3e8dc4ed172c74f4381f066d3655a6 286 Gene3D G3DSA:3.40.50.10860 13 273 2.3E-78 T 12-10-2018 AMJ96_PB00135 238780fb3334d9b7d2f0dcded8286596 323 Pfam PF02653 Branched-chain amino acid transport system / permease component 43 308 6.8E-26 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH02119 e7bbd63b6e30625378b4c7fabe6f7f3e 300 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 26 74 3.2E-10 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMJ96_CH02119 e7bbd63b6e30625378b4c7fabe6f7f3e 300 SUPERFAMILY SSF161098 92 279 6.93E-26 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02119 e7bbd63b6e30625378b4c7fabe6f7f3e 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 296 2.7E-28 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02119 e7bbd63b6e30625378b4c7fabe6f7f3e 300 Gene3D G3DSA:1.10.3720.10 88 293 4.9E-17 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00673 d46db1a0053b5c9e9175558527491f17 285 Gene3D G3DSA:2.60.40.2500 154 281 7.7E-38 T 12-10-2018 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily AMJ96_PD00673 d46db1a0053b5c9e9175558527491f17 285 TIGRFAM TIGR02781 VirB9: P-type conjugative transfer protein VirB9 7 257 2.3E-76 T 12-10-2018 IPR014148 P-type conjugative transfer protein VirB9 AMJ96_PD00673 d46db1a0053b5c9e9175558527491f17 285 Pfam PF03524 Conjugal transfer protein 32 255 3.5E-59 T 12-10-2018 IPR010258 Conjugal transfer, TrbG/VirB9/CagX AMJ96_PD00099 9c80f64e36e4fda852bb1dc63cb441e1 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 7.5E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00099 9c80f64e36e4fda852bb1dc63cb441e1 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 7.5E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00099 9c80f64e36e4fda852bb1dc63cb441e1 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 7.5E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00099 9c80f64e36e4fda852bb1dc63cb441e1 257 SUPERFAMILY SSF51735 10 236 5.03E-60 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00099 9c80f64e36e4fda852bb1dc63cb441e1 257 Gene3D G3DSA:3.40.50.720 10 257 4.9E-69 T 12-10-2018 AMJ96_PD00099 9c80f64e36e4fda852bb1dc63cb441e1 257 Pfam PF00106 short chain dehydrogenase 11 204 3.4E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00099 9c80f64e36e4fda852bb1dc63cb441e1 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_PD00099 9c80f64e36e4fda852bb1dc63cb441e1 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 8.9E-25 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00099 9c80f64e36e4fda852bb1dc63cb441e1 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 8.9E-25 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00099 9c80f64e36e4fda852bb1dc63cb441e1 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 8.9E-25 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00099 9c80f64e36e4fda852bb1dc63cb441e1 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 8.9E-25 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00099 9c80f64e36e4fda852bb1dc63cb441e1 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 8.9E-25 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00286 e54c8eefbc7b8c83abd30f27f30d5d6d 262 Pfam PF00005 ABC transporter 22 180 8.0E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00286 e54c8eefbc7b8c83abd30f27f30d5d6d 262 TIGRFAM TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA 7 257 3.1E-144 T 12-10-2018 IPR014343 Ectoine/hydroxyectoine ABC transporter, ATP-binding protein AMJ96_PD00286 e54c8eefbc7b8c83abd30f27f30d5d6d 262 PIRSF PIRSF039085 3 257 1.9E-103 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AMJ96_PD00286 e54c8eefbc7b8c83abd30f27f30d5d6d 262 SUPERFAMILY SSF52540 6 251 4.86E-78 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00286 e54c8eefbc7b8c83abd30f27f30d5d6d 262 Gene3D G3DSA:3.40.50.300 5 260 1.4E-76 T 12-10-2018 AMJ96_PD00286 e54c8eefbc7b8c83abd30f27f30d5d6d 262 SMART SM00382 31 229 3.0E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00286 e54c8eefbc7b8c83abd30f27f30d5d6d 262 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PB00025 83b4e734987a7565594469aae36f8c43 286 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 31 246 7.7E-37 T 12-10-2018 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system AMJ96_CH01044 2dc4fd21af14be373ff46cf57fafbc9d 201 SUPERFAMILY SSF46689 3 88 1.44E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH01044 2dc4fd21af14be373ff46cf57fafbc9d 201 Pfam PF13305 WHG domain 89 173 8.2E-15 T 12-10-2018 IPR025996 WHG domain AMJ96_CH01044 2dc4fd21af14be373ff46cf57fafbc9d 201 Gene3D G3DSA:1.10.357.10 1 195 7.9E-47 T 12-10-2018 AMJ96_CH01044 2dc4fd21af14be373ff46cf57fafbc9d 201 SUPERFAMILY SSF48498 82 182 7.79E-15 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_PC00187 55f39302749a07c0bb0758d3bc703c74 271 SUPERFAMILY SSF161098 9 271 8.5E-58 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00187 55f39302749a07c0bb0758d3bc703c74 271 Gene3D G3DSA:1.10.3720.10 2 259 8.0E-49 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00187 55f39302749a07c0bb0758d3bc703c74 271 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 264 1.3E-11 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02911 f9adf08505bcbd9cf17ab07e34aed0d2 543 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 283 490 6.3E-48 T 12-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AMJ96_CH02911 f9adf08505bcbd9cf17ab07e34aed0d2 543 Gene3D G3DSA:3.30.420.40 15 515 8.9E-170 T 12-10-2018 AMJ96_CH02911 f9adf08505bcbd9cf17ab07e34aed0d2 543 SUPERFAMILY SSF53067 282 537 8.03E-51 T 12-10-2018 AMJ96_CH02911 f9adf08505bcbd9cf17ab07e34aed0d2 543 TIGRFAM TIGR01315 5C_CHO_kinase: FGGY-family pentulose kinase 15 540 1.1E-216 T 12-10-2018 IPR006003 FGGY carbohydrate kinase, pentulose kinase GO:0005975|GO:0016773 AMJ96_CH02911 f9adf08505bcbd9cf17ab07e34aed0d2 543 SUPERFAMILY SSF53067 13 273 4.35E-60 T 12-10-2018 AMJ96_CH02911 f9adf08505bcbd9cf17ab07e34aed0d2 543 PIRSF PIRSF000538 12 542 6.3E-79 T 12-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AMJ96_CH02911 f9adf08505bcbd9cf17ab07e34aed0d2 543 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 14 272 9.5E-25 T 12-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AMJ96_CH02911 f9adf08505bcbd9cf17ab07e34aed0d2 543 Gene3D G3DSA:3.30.420.460 325 527 8.9E-170 T 12-10-2018 AMJ96_PD00327 6fe7bd3df84337b5c629523dc4b5dd61 237 Gene3D G3DSA:1.10.10.10 13 83 5.9E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00327 6fe7bd3df84337b5c629523dc4b5dd61 237 SUPERFAMILY SSF46785 14 83 9.96E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00327 6fe7bd3df84337b5c629523dc4b5dd61 237 Pfam PF07729 FCD domain 102 227 4.6E-20 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00327 6fe7bd3df84337b5c629523dc4b5dd61 237 SMART SM00895 101 228 2.3E-19 T 12-10-2018 IPR011711 GntR, C-terminal AMJ96_PD00327 6fe7bd3df84337b5c629523dc4b5dd61 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 53 2.4E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00327 6fe7bd3df84337b5c629523dc4b5dd61 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 53 69 2.4E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00327 6fe7bd3df84337b5c629523dc4b5dd61 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 79 1.9E-18 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_PD00327 6fe7bd3df84337b5c629523dc4b5dd61 237 SUPERFAMILY SSF48008 98 235 1.36E-21 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00327 6fe7bd3df84337b5c629523dc4b5dd61 237 Gene3D G3DSA:1.20.120.530 102 235 5.9E-24 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AMJ96_PD00327 6fe7bd3df84337b5c629523dc4b5dd61 237 SMART SM00345 20 79 4.4E-18 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AMJ96_CH03680 6a6fa504849e51c290046872d0a0437d 390 SUPERFAMILY SSF54373 175 275 3.65E-44 T 12-10-2018 AMJ96_CH03680 6a6fa504849e51c290046872d0a0437d 390 SUPERFAMILY SSF51905 3 389 2.96E-49 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03680 6a6fa504849e51c290046872d0a0437d 390 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 4.3E-27 T 12-10-2018 AMJ96_CH03680 6a6fa504849e51c290046872d0a0437d 390 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 4.3E-27 T 12-10-2018 AMJ96_CH03680 6a6fa504849e51c290046872d0a0437d 390 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 4.3E-27 T 12-10-2018 AMJ96_CH03680 6a6fa504849e51c290046872d0a0437d 390 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 151 166 4.3E-27 T 12-10-2018 AMJ96_CH03680 6a6fa504849e51c290046872d0a0437d 390 Pfam PF01494 FAD binding domain 2 343 2.5E-92 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 AMJ96_CH03680 6a6fa504849e51c290046872d0a0437d 390 Gene3D G3DSA:3.30.9.10 73 387 1.0E-163 T 12-10-2018 AMJ96_CH03680 6a6fa504849e51c290046872d0a0437d 390 Gene3D G3DSA:3.50.50.60 2 351 1.0E-163 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03680 6a6fa504849e51c290046872d0a0437d 390 TIGRFAM TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase 1 390 8.0E-203 T 12-10-2018 IPR012733 4-hydroxybenzoate 3-monooxygenase GO:0018659|GO:0043639|GO:0050660|GO:0055114 AMJ96_CH00375 875b7dc83179bfd2d3bb31a68972f0d8 214 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 8 210 5.2E-45 T 12-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 AMJ96_CH00375 875b7dc83179bfd2d3bb31a68972f0d8 214 Gene3D G3DSA:3.90.950.10 5 213 1.4E-61 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMJ96_CH00375 875b7dc83179bfd2d3bb31a68972f0d8 214 SUPERFAMILY SSF52972 4 212 5.76E-60 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AMJ96_CH00375 875b7dc83179bfd2d3bb31a68972f0d8 214 Pfam PF01725 Ham1 family 9 209 1.1E-50 T 12-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 AMJ96_CH00375 875b7dc83179bfd2d3bb31a68972f0d8 214 Hamap MF_01405 dITP/XTP pyrophosphatase. 7 213 42.987 T 12-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 AMJ96_PB00309 b1f36dba575de940861494ed7ebc7a6c 492 SUPERFAMILY SSF53146 373 482 3.14E-28 T 12-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily AMJ96_PB00309 b1f36dba575de940861494ed7ebc7a6c 492 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 384 476 4.5E-18 T 12-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis AMJ96_PB00309 b1f36dba575de940861494ed7ebc7a6c 492 Gene3D G3DSA:3.30.420.130 369 484 2.7E-24 T 12-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily AMJ96_PB00309 b1f36dba575de940861494ed7ebc7a6c 492 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 72 83 - T 12-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AMJ96_PB00309 b1f36dba575de940861494ed7ebc7a6c 492 TIGRFAM TIGR01290 nifB: nitrogenase cofactor biosynthesis protein NifB 44 480 7.4E-212 T 12-10-2018 IPR005980 Nitrogenase cofactor biosynthesis protein NifB GO:0009108|GO:0009399 AMJ96_PB00309 b1f36dba575de940861494ed7ebc7a6c 492 Pfam PF04055 Radical SAM superfamily 72 253 1.7E-24 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMJ96_PB00309 b1f36dba575de940861494ed7ebc7a6c 492 Gene3D G3DSA:3.20.20.70 59 316 5.9E-27 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_PB00309 b1f36dba575de940861494ed7ebc7a6c 492 SUPERFAMILY SSF102114 60 277 1.31E-33 T 12-10-2018 AMJ96_CH03744 bb2dc6e797a0b2e467d0a428b57550a3 307 SUPERFAMILY SSF54506 4 305 2.36E-64 T 12-10-2018 AMJ96_CH03744 bb2dc6e797a0b2e467d0a428b57550a3 307 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 6 303 9.5E-65 T 12-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMJ96_CH03744 bb2dc6e797a0b2e467d0a428b57550a3 307 PIRSF PIRSF016184 1 305 3.8E-77 T 12-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMJ96_CH03744 bb2dc6e797a0b2e467d0a428b57550a3 307 Gene3D G3DSA:3.10.310.10 8 299 4.7E-79 T 12-10-2018 AMJ96_CH03744 bb2dc6e797a0b2e467d0a428b57550a3 307 Pfam PF02567 Phenazine biosynthesis-like protein 9 301 1.2E-59 T 12-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AMJ96_CH03744 bb2dc6e797a0b2e467d0a428b57550a3 307 Gene3D G3DSA:3.10.310.10 134 297 4.7E-79 T 12-10-2018 AMJ96_CH00661 bf8e5f0b8b26e2c9c55cf8c4e495c2f9 301 SUPERFAMILY SSF103481 49 151 1.44E-10 T 12-10-2018 AMJ96_CH00661 bf8e5f0b8b26e2c9c55cf8c4e495c2f9 301 SUPERFAMILY SSF103481 197 296 5.75E-13 T 12-10-2018 AMJ96_CH00661 bf8e5f0b8b26e2c9c55cf8c4e495c2f9 301 Pfam PF00892 EamA-like transporter family 161 294 1.1E-18 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH00661 bf8e5f0b8b26e2c9c55cf8c4e495c2f9 301 Pfam PF00892 EamA-like transporter family 22 148 5.7E-12 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH03259 73cb52e174f2dbeb6c65f721bf5fefe9 295 SUPERFAMILY SSF53613 6 285 3.43E-64 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_CH03259 73cb52e174f2dbeb6c65f721bf5fefe9 295 Gene3D G3DSA:3.40.1190.20 1 289 3.0E-68 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_CH03259 73cb52e174f2dbeb6c65f721bf5fefe9 295 Pfam PF00294 pfkB family carbohydrate kinase 13 284 2.0E-48 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB AMJ96_CH03259 73cb52e174f2dbeb6c65f721bf5fefe9 295 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 241 254 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMJ96_CH04001 e89798bad5f08b268f1be6784d7d34c2 142 PIRSF PIRSF032131 1 142 7.6E-63 T 12-10-2018 IPR009562 Protein of unknown function DUF1178 AMJ96_CH04001 e89798bad5f08b268f1be6784d7d34c2 142 Pfam PF06676 Protein of unknown function (DUF1178) 1 138 3.5E-50 T 12-10-2018 IPR009562 Protein of unknown function DUF1178 AMJ96_CH00163 d2eaf17c2ad094799e6f2b2cd82a5ce1 253 Pfam PF06299 Protein of unknown function (DUF1045) 83 241 2.5E-60 T 12-10-2018 IPR009389 Protein of unknown function DUF1045 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_CH00163 d2eaf17c2ad094799e6f2b2cd82a5ce1 253 TIGRFAM TIGR03223 Phn_opern_protn: putative phosphonate metabolism protein 24 249 5.3E-84 T 12-10-2018 IPR009389 Protein of unknown function DUF1045 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_CH00163 d2eaf17c2ad094799e6f2b2cd82a5ce1 253 PIRSF PIRSF033328 23 253 2.7E-89 T 12-10-2018 IPR009389 Protein of unknown function DUF1045 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AMJ96_PD00332 4b8fff408c9baee17a5b25f6d19523a0 365 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 144 365 7.1E-41 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00332 4b8fff408c9baee17a5b25f6d19523a0 365 Gene3D G3DSA:1.10.3720.10 118 361 1.0E-23 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00332 4b8fff408c9baee17a5b25f6d19523a0 365 SUPERFAMILY SSF161098 122 351 4.25E-19 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 326 2.1E-48 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 PIRSF PIRSF000350 1 463 5.6E-73 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 1.8E-25 T 12-10-2018 AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 1.8E-25 T 12-10-2018 AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 137 155 1.8E-25 T 12-10-2018 AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 176 194 1.8E-25 T 12-10-2018 AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 277 1.8E-25 T 12-10-2018 AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 Gene3D G3DSA:3.50.50.60 149 268 1.4E-86 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 Gene3D G3DSA:3.50.50.60 4 329 1.4E-86 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 Gene3D G3DSA:3.30.390.30 345 461 4.7E-29 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 346 451 3.2E-26 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 SUPERFAMILY SSF55424 344 461 9.28E-31 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 SUPERFAMILY SSF51905 1 378 2.75E-53 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 176 201 1.4E-50 T 12-10-2018 AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 140 149 1.4E-50 T 12-10-2018 AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 341 362 1.4E-50 T 12-10-2018 AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 1.4E-50 T 12-10-2018 AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 1.4E-50 T 12-10-2018 AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 262 276 1.4E-50 T 12-10-2018 AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 406 421 1.4E-50 T 12-10-2018 AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 428 448 1.4E-50 T 12-10-2018 AMJ96_CH01903 b5d15e1baea197f2045fba807b46e7ad 468 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.4E-50 T 12-10-2018 AMJ96_CH04172 63e956a7d5ccf16e7ce0edcab00c2513 283 Pfam PF00106 short chain dehydrogenase 12 209 1.3E-46 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04172 63e956a7d5ccf16e7ce0edcab00c2513 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 6.9E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04172 63e956a7d5ccf16e7ce0edcab00c2513 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 6.9E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04172 63e956a7d5ccf16e7ce0edcab00c2513 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 6.9E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04172 63e956a7d5ccf16e7ce0edcab00c2513 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 6.9E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04172 63e956a7d5ccf16e7ce0edcab00c2513 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 6.9E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04172 63e956a7d5ccf16e7ce0edcab00c2513 283 SUPERFAMILY SSF51735 10 239 3.94E-54 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH04172 63e956a7d5ccf16e7ce0edcab00c2513 283 Gene3D G3DSA:3.40.50.720 9 258 1.3E-59 T 12-10-2018 AMJ96_CH04172 63e956a7d5ccf16e7ce0edcab00c2513 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 6.2E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04172 63e956a7d5ccf16e7ce0edcab00c2513 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 6.2E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH04172 63e956a7d5ccf16e7ce0edcab00c2513 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 6.2E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03879 0aaf03c10becee5f86414731c6858200 351 Pfam PF00144 Beta-lactamase 61 333 2.8E-23 T 12-10-2018 IPR001466 Beta-lactamase-related AMJ96_CH03879 0aaf03c10becee5f86414731c6858200 351 Gene3D G3DSA:3.40.710.10 31 338 6.8E-55 T 12-10-2018 AMJ96_CH03879 0aaf03c10becee5f86414731c6858200 351 SUPERFAMILY SSF56601 9 331 4.13E-62 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMJ96_PA00111 e1fa533f2038e2c769c01ec11b834b7b 249 SUPERFAMILY SSF51695 15 247 4.71E-64 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMJ96_PA00111 e1fa533f2038e2c769c01ec11b834b7b 249 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 18 244 2.0E-42 T 12-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 AMJ96_PA00111 e1fa533f2038e2c769c01ec11b834b7b 249 Gene3D G3DSA:3.20.20.190 9 249 1.4E-71 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMJ96_CH02388 8e8015715c5fe61a437151301a941a72 313 Gene3D G3DSA:3.40.1190.20 1 313 2.1E-98 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_CH02388 8e8015715c5fe61a437151301a941a72 313 Pfam PF00294 pfkB family carbohydrate kinase 1 291 1.0E-41 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB AMJ96_CH02388 8e8015715c5fe61a437151301a941a72 313 SUPERFAMILY SSF53613 1 300 4.99E-53 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_CH03909 f154dbd1cbbdd69f45fd4378b9c6f869 488 SUPERFAMILY SSF48163 320 477 7.46E-32 T 12-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMJ96_CH03909 f154dbd1cbbdd69f45fd4378b9c6f869 488 SUPERFAMILY SSF52374 10 319 1.42E-105 T 12-10-2018 AMJ96_CH03909 f154dbd1cbbdd69f45fd4378b9c6f869 488 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 16 27 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AMJ96_CH03909 f154dbd1cbbdd69f45fd4378b9c6f869 488 Gene3D G3DSA:3.40.50.620 2 335 2.5E-145 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_CH03909 f154dbd1cbbdd69f45fd4378b9c6f869 488 Gene3D G3DSA:1.10.10.350 378 485 2.6E-23 T 12-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMJ96_CH03909 f154dbd1cbbdd69f45fd4378b9c6f869 488 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 10 476 1.0E-139 T 12-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMJ96_CH03909 f154dbd1cbbdd69f45fd4378b9c6f869 488 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 9 478 30.062 T 12-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AMJ96_CH03909 f154dbd1cbbdd69f45fd4378b9c6f869 488 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 10 326 9.6E-119 T 12-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 AMJ96_CH03909 f154dbd1cbbdd69f45fd4378b9c6f869 488 PRINTS PR00987 Glutamyl-tRNA synthetase signature 42 55 6.2E-24 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMJ96_CH03909 f154dbd1cbbdd69f45fd4378b9c6f869 488 PRINTS PR00987 Glutamyl-tRNA synthetase signature 27 38 6.2E-24 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMJ96_CH03909 f154dbd1cbbdd69f45fd4378b9c6f869 488 PRINTS PR00987 Glutamyl-tRNA synthetase signature 215 223 6.2E-24 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMJ96_CH03909 f154dbd1cbbdd69f45fd4378b9c6f869 488 PRINTS PR00987 Glutamyl-tRNA synthetase signature 13 25 6.2E-24 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMJ96_CH03909 f154dbd1cbbdd69f45fd4378b9c6f869 488 PRINTS PR00987 Glutamyl-tRNA synthetase signature 199 209 6.2E-24 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 AMJ96_PD00663 6e3615e0d67b7654ca1f802bb4f016d5 161 Pfam PF09722 Protein of unknown function (DUF2384) 109 158 1.5E-16 T 12-10-2018 IPR024467 Domain of unknown function DUF2384 AMJ96_PD00663 6e3615e0d67b7654ca1f802bb4f016d5 161 TIGRFAM TIGR02293 TAS_TIGR02293: putative toxin-antitoxin system antitoxin component, TIGR02293 family 28 161 1.3E-49 T 12-10-2018 IPR011979 Conserved hypothetical protein CHP02293 AMJ96_CH00724 0a055273c57274badf39b42b7a79b5c0 115 Pfam PF07309 Flagellar protein FlaF 2 114 6.4E-33 T 12-10-2018 IPR010845 Flagellar FlaF GO:0044781 AMJ96_PB00226 a57717bc8bc9a8ffd05e30b178b40362 316 Gene3D G3DSA:3.40.190.10 114 301 2.0E-26 T 12-10-2018 AMJ96_PB00226 a57717bc8bc9a8ffd05e30b178b40362 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 49 1.7E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PB00226 a57717bc8bc9a8ffd05e30b178b40362 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 59 70 1.7E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PB00226 a57717bc8bc9a8ffd05e30b178b40362 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 59 1.7E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PB00226 a57717bc8bc9a8ffd05e30b178b40362 316 Pfam PF03466 LysR substrate binding domain 113 309 1.1E-24 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PB00226 a57717bc8bc9a8ffd05e30b178b40362 316 Gene3D G3DSA:3.40.190.10 181 284 2.0E-26 T 12-10-2018 AMJ96_PB00226 a57717bc8bc9a8ffd05e30b178b40362 316 Gene3D G3DSA:1.10.10.10 21 107 5.4E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PB00226 a57717bc8bc9a8ffd05e30b178b40362 316 SUPERFAMILY SSF53850 111 314 1.32E-26 T 12-10-2018 AMJ96_PB00226 a57717bc8bc9a8ffd05e30b178b40362 316 SUPERFAMILY SSF46785 21 98 1.63E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PB00226 a57717bc8bc9a8ffd05e30b178b40362 316 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 23 78 2.8E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH01114 c0cebdaec797b250f695838fbbf80014 107 Pfam PF14384 BrnA antitoxin of type II toxin-antitoxin system 26 101 1.6E-24 T 12-10-2018 IPR025528 BrnA antitoxin of type II toxin-antitoxin system AMJ96_PB00400 73a961ae76590565bf0478ecb67a2dbd 250 SUPERFAMILY SSF103473 31 166 3.4E-8 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH02788 259447621db77813e3558b371c7acda4 296 SUPERFAMILY SSF51735 1 280 1.15E-43 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02788 259447621db77813e3558b371c7acda4 296 Gene3D G3DSA:3.40.50.720 1 255 1.2E-39 T 12-10-2018 AMJ96_CH02788 259447621db77813e3558b371c7acda4 296 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 210 3.6E-14 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_CH03424 66c47a669bb4fa845a315d01ecdce01a 446 Pfam PF04932 O-Antigen ligase 226 369 1.1E-17 T 12-10-2018 IPR007016 O-antigen ligase-related AMJ96_CH03016 2682b16979dfc6fc6936911894dd75b2 384 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 18 363 1.1E-103 T 12-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH03016 2682b16979dfc6fc6936911894dd75b2 384 Pfam PF01098 Cell cycle protein 21 364 1.3E-77 T 12-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH02356 ff4f7df7b93b66a13770a9d636ff9d3a 216 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 30 210 1.0E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02356 ff4f7df7b93b66a13770a9d636ff9d3a 216 SUPERFAMILY SSF161098 12 197 7.72E-42 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02356 ff4f7df7b93b66a13770a9d636ff9d3a 216 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 9 106 8.5E-29 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_CH02356 ff4f7df7b93b66a13770a9d636ff9d3a 216 Gene3D G3DSA:1.10.3720.10 9 215 3.7E-46 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03642 966157069bf1fb250d821348a7641be5 231 SUPERFAMILY SSF53271 52 200 8.92E-19 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like AMJ96_CH03642 966157069bf1fb250d821348a7641be5 231 Gene3D G3DSA:3.40.50.2020 25 198 9.2E-28 T 12-10-2018 AMJ96_CH03642 966157069bf1fb250d821348a7641be5 231 Pfam PF00156 Phosphoribosyl transferase domain 61 185 7.0E-14 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AMJ96_PC00161 f6bb810170b987bd11ddae59e6d2f4ae 299 Gene3D G3DSA:1.10.10.10 6 93 2.0E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00161 f6bb810170b987bd11ddae59e6d2f4ae 299 SUPERFAMILY SSF53850 90 298 7.06E-46 T 12-10-2018 AMJ96_PC00161 f6bb810170b987bd11ddae59e6d2f4ae 299 Gene3D G3DSA:3.40.190.10 167 269 1.9E-60 T 12-10-2018 AMJ96_PC00161 f6bb810170b987bd11ddae59e6d2f4ae 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 65 2.7E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PC00161 f6bb810170b987bd11ddae59e6d2f4ae 299 SUPERFAMILY SSF46785 10 114 9.99E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00161 f6bb810170b987bd11ddae59e6d2f4ae 299 Gene3D G3DSA:3.40.190.10 94 296 1.9E-60 T 12-10-2018 AMJ96_PC00161 f6bb810170b987bd11ddae59e6d2f4ae 299 Pfam PF03466 LysR substrate binding domain 91 296 1.9E-40 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH04237 7d6a8c787dc418a6715c01568c7b9ac2 341 Pfam PF02653 Branched-chain amino acid transport system / permease component 60 328 2.9E-48 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH02860 c4f422e3d14cbeaf80ebefd2b17771dc 250 SUPERFAMILY SSF81301 19 97 8.18E-9 T 12-10-2018 AMJ96_CH02860 c4f422e3d14cbeaf80ebefd2b17771dc 250 Gene3D G3DSA:3.30.460.10 11 113 2.1E-9 T 12-10-2018 AMJ96_CH00080 2eb4733f6054c731fe3ed6dab7ef0298 276 SUPERFAMILY SSF51658 7 274 7.6E-53 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_CH00080 2eb4733f6054c731fe3ed6dab7ef0298 276 Pfam PF01261 Xylose isomerase-like TIM barrel 27 226 7.3E-28 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMJ96_CH00080 2eb4733f6054c731fe3ed6dab7ef0298 276 Gene3D G3DSA:3.20.20.150 1 274 1.4E-71 T 12-10-2018 AMJ96_PC00095 d07fc210591bd49c7a71dcb2f6b7facb 496 Gene3D G3DSA:1.10.275.10 1 191 1.3E-52 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal AMJ96_PC00095 d07fc210591bd49c7a71dcb2f6b7facb 496 Pfam PF00221 Aromatic amino acid lyase 9 466 7.5E-138 T 12-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 AMJ96_PC00095 d07fc210591bd49c7a71dcb2f6b7facb 496 Gene3D G3DSA:1.20.200.10 192 494 6.2E-80 T 12-10-2018 AMJ96_PC00095 d07fc210591bd49c7a71dcb2f6b7facb 496 SUPERFAMILY SSF48557 7 492 4.32E-140 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 AMJ96_CH00173 517dbb3bb8f7be8fc9f8d58dbd270622 202 PIRSF PIRSF020680 3 202 9.5E-65 T 12-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 AMJ96_CH00173 517dbb3bb8f7be8fc9f8d58dbd270622 202 Pfam PF05845 Bacterial phosphonate metabolism protein (PhnH) 11 197 2.7E-62 T 12-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 AMJ96_CH00173 517dbb3bb8f7be8fc9f8d58dbd270622 202 Gene3D G3DSA:3.40.50.11310 7 199 1.2E-60 T 12-10-2018 IPR038058 PhnH-like superfamily AMJ96_CH00173 517dbb3bb8f7be8fc9f8d58dbd270622 202 TIGRFAM TIGR03292 PhnH_redo: phosphonate C-P lyase system protein PhnH 11 196 6.3E-60 T 12-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 AMJ96_CH00173 517dbb3bb8f7be8fc9f8d58dbd270622 202 SUPERFAMILY SSF159709 18 198 1.44E-59 T 12-10-2018 IPR038058 PhnH-like superfamily AMJ96_CH02965 2a4c8dfa1de7b600820a543c59f236ac 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 41.168 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMJ96_CH02965 2a4c8dfa1de7b600820a543c59f236ac 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 85 1.5E-41 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMJ96_CH02965 2a4c8dfa1de7b600820a543c59f236ac 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 264 8.3E-97 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMJ96_CH02965 2a4c8dfa1de7b600820a543c59f236ac 264 Gene3D G3DSA:3.30.572.10 1 264 7.0E-132 T 12-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMJ96_CH02965 2a4c8dfa1de7b600820a543c59f236ac 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 5.5E-49 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMJ96_CH02965 2a4c8dfa1de7b600820a543c59f236ac 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 5.5E-49 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMJ96_CH02965 2a4c8dfa1de7b600820a543c59f236ac 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 5.5E-49 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMJ96_CH02965 2a4c8dfa1de7b600820a543c59f236ac 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 5.5E-49 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMJ96_CH02965 2a4c8dfa1de7b600820a543c59f236ac 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 5.5E-49 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMJ96_CH02965 2a4c8dfa1de7b600820a543c59f236ac 264 SUPERFAMILY SSF55831 1 264 8.64E-130 T 12-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMJ96_CH02965 2a4c8dfa1de7b600820a543c59f236ac 264 Pfam PF00303 Thymidylate synthase 2 264 9.8E-124 T 12-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMJ96_CH02965 2a4c8dfa1de7b600820a543c59f236ac 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 12-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AMJ96_CH00330 605e997a7c6eaccddb3bd42e61f35bfb 193 Gene3D G3DSA:3.40.50.1240 3 187 1.1E-37 T 12-10-2018 IPR029033 Histidine phosphatase superfamily AMJ96_CH00330 605e997a7c6eaccddb3bd42e61f35bfb 193 SUPERFAMILY SSF53254 20 178 1.82E-23 T 12-10-2018 IPR029033 Histidine phosphatase superfamily AMJ96_CH00330 605e997a7c6eaccddb3bd42e61f35bfb 193 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 23 164 2.7E-17 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMJ96_CH04347 5a7fa76a6cae08900ffb16b5ed94ed03 310 SUPERFAMILY SSF53686 5 299 3.27E-71 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMJ96_CH04347 5a7fa76a6cae08900ffb16b5ed94ed03 310 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 31 44 - T 12-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AMJ96_CH04347 5a7fa76a6cae08900ffb16b5ed94ed03 310 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 8 283 6.0E-70 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMJ96_CH04347 5a7fa76a6cae08900ffb16b5ed94ed03 310 Gene3D G3DSA:3.40.50.1100 43 133 1.8E-103 T 12-10-2018 AMJ96_CH04347 5a7fa76a6cae08900ffb16b5ed94ed03 310 Gene3D G3DSA:3.40.50.1100 10 298 1.8E-103 T 12-10-2018 AMJ96_CH00968 4ee771a47798bbcabcbeb1a272a5f6fd 165 SUPERFAMILY SSF55811 29 157 1.62E-17 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_CH00968 4ee771a47798bbcabcbeb1a272a5f6fd 165 Gene3D G3DSA:3.90.79.10 25 160 3.0E-21 T 12-10-2018 AMJ96_CH00968 4ee771a47798bbcabcbeb1a272a5f6fd 165 Pfam PF00293 NUDIX domain 38 146 6.8E-8 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMJ96_CH03981 c3b3aa28a6741b917c553b7dd8b61e44 198 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 5 187 5.6E-60 T 12-10-2018 IPR006286 Deglycase PfpI AMJ96_CH03981 c3b3aa28a6741b917c553b7dd8b61e44 198 Pfam PF01965 DJ-1/PfpI family 5 185 9.4E-52 T 12-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 AMJ96_CH03981 c3b3aa28a6741b917c553b7dd8b61e44 198 SUPERFAMILY SSF52317 5 187 2.64E-52 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH03981 c3b3aa28a6741b917c553b7dd8b61e44 198 Gene3D G3DSA:3.40.50.880 3 191 1.1E-54 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_PD00260 4fb2e466d72d4bdebe32768ed0f76a9b 386 Gene3D G3DSA:3.90.850.10 142 365 1.6E-41 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMJ96_PD00260 4fb2e466d72d4bdebe32768ed0f76a9b 386 SUPERFAMILY SSF56529 161 361 9.42E-26 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 AMJ96_PD00260 4fb2e466d72d4bdebe32768ed0f76a9b 386 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 216 361 8.9E-8 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 AMJ96_CH03157 91264df0984eb8406b9e0608c7e3fde0 542 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 103 258 3.8E-12 T 12-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like AMJ96_PD00505 a9f02e3598e69f356f011a1f5d472a16 106 Gene3D G3DSA:2.60.40.420 17 104 9.8E-15 T 12-10-2018 IPR008972 Cupredoxin AMJ96_PD00505 a9f02e3598e69f356f011a1f5d472a16 106 SUPERFAMILY SSF49503 10 104 4.07E-19 T 12-10-2018 IPR008972 Cupredoxin AMJ96_CH03411 81abbffb0f6ab306409787b4c40281a3 210 Gene3D G3DSA:3.40.50.150 37 206 1.4E-35 T 12-10-2018 AMJ96_CH03411 81abbffb0f6ab306409787b4c40281a3 210 SUPERFAMILY SSF53335 24 198 3.16E-35 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH03411 81abbffb0f6ab306409787b4c40281a3 210 Pfam PF13489 Methyltransferase domain 37 187 1.1E-22 T 12-10-2018 AMJ96_CH01101 b3182d284febefb63aa9cbeea22c1194 138 SUPERFAMILY SSF51316 1 137 9.0E-36 T 12-10-2018 IPR011057 Mss4-like superfamily AMJ96_CH01101 b3182d284febefb63aa9cbeea22c1194 138 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 27 116 9.5E-24 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMJ96_CH01101 b3182d284febefb63aa9cbeea22c1194 138 Gene3D G3DSA:2.170.150.70 5 121 5.3E-13 T 12-10-2018 AMJ96_CH01915 7c13fe0fd26a334158fde8291bd0978d 163 Pfam PF00583 Acetyltransferase (GNAT) family 43 136 3.6E-16 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH01915 7c13fe0fd26a334158fde8291bd0978d 163 Gene3D G3DSA:3.40.630.30 1 162 5.0E-27 T 12-10-2018 AMJ96_CH01915 7c13fe0fd26a334158fde8291bd0978d 163 SUPERFAMILY SSF55729 4 156 1.11E-25 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_PD00156 b1353e913d7148a09e268a14f0aead8d 135 Pfam PF11154 Protein of unknown function (DUF2934) 8 32 8.9E-11 T 12-10-2018 IPR021327 Protein of unknown function DUF2934 AMJ96_CH00805 4ca3773091169cc025390b2184e5937f 377 Pfam PF13524 Glycosyl transferases group 1 278 365 1.7E-25 T 12-10-2018 AMJ96_CH00805 4ca3773091169cc025390b2184e5937f 377 SUPERFAMILY SSF53756 49 370 9.42E-7 T 12-10-2018 AMJ96_CH03264 6c7496d960d4df3bba9e9866ec53495b 227 SUPERFAMILY SSF48452 98 202 2.28E-5 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03264 6c7496d960d4df3bba9e9866ec53495b 227 Gene3D G3DSA:1.25.40.10 48 219 2.7E-10 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03264 6c7496d960d4df3bba9e9866ec53495b 227 Pfam PF09976 Tetratricopeptide repeat-like domain 24 211 3.3E-19 T 12-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 AMJ96_PD00647 9be9882dc76d3d78bf2043847d81a453 369 Pfam PF08402 TOBE domain 285 364 1.3E-7 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_PD00647 9be9882dc76d3d78bf2043847d81a453 369 Gene3D G3DSA:2.40.50.940 224 364 1.9E-11 T 12-10-2018 AMJ96_PD00647 9be9882dc76d3d78bf2043847d81a453 369 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 36 341 3.8E-111 T 12-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 AMJ96_PD00647 9be9882dc76d3d78bf2043847d81a453 369 SUPERFAMILY SSF52540 7 245 2.59E-87 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00647 9be9882dc76d3d78bf2043847d81a453 369 SMART SM00382 30 213 2.7E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00647 9be9882dc76d3d78bf2043847d81a453 369 Pfam PF00005 ABC transporter 22 163 7.1E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00647 9be9882dc76d3d78bf2043847d81a453 369 SUPERFAMILY SSF50331 238 365 9.64E-10 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_PD00647 9be9882dc76d3d78bf2043847d81a453 369 Gene3D G3DSA:2.40.50.140 292 356 1.9E-11 T 12-10-2018 AMJ96_PD00647 9be9882dc76d3d78bf2043847d81a453 369 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00647 9be9882dc76d3d78bf2043847d81a453 369 Gene3D G3DSA:3.40.50.300 7 223 1.0E-67 T 12-10-2018 AMJ96_PA00100 d9d9b432adcf8b28f47744d6aab1c09b 305 SUPERFAMILY SSF161098 92 278 2.22E-22 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00100 d9d9b432adcf8b28f47744d6aab1c09b 305 Gene3D G3DSA:1.10.3720.10 86 291 1.5E-15 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00100 d9d9b432adcf8b28f47744d6aab1c09b 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 293 8.3E-23 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00875 d1c44a24e0e1d3965623775519b84c67 210 Gene3D G3DSA:3.20.20.70 8 209 2.4E-56 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH00875 d1c44a24e0e1d3965623775519b84c67 210 Pfam PF01081 KDPG and KHG aldolase 11 187 6.3E-27 T 12-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AMJ96_CH00875 d1c44a24e0e1d3965623775519b84c67 210 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 125 138 - T 12-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AMJ96_CH00875 d1c44a24e0e1d3965623775519b84c67 210 SUPERFAMILY SSF51569 9 204 1.34E-53 T 12-10-2018 AMJ96_CH02879 ef887162cc8c775d6f79d09472e34652 271 SMART SM00450 7 104 4.3E-9 T 12-10-2018 IPR001763 Rhodanese-like domain AMJ96_CH02879 ef887162cc8c775d6f79d09472e34652 271 Gene3D G3DSA:3.40.250.10 5 107 7.9E-14 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily AMJ96_CH02879 ef887162cc8c775d6f79d09472e34652 271 Pfam PF00581 Rhodanese-like domain 8 100 1.6E-6 T 12-10-2018 IPR001763 Rhodanese-like domain AMJ96_CH02879 ef887162cc8c775d6f79d09472e34652 271 SUPERFAMILY SSF52821 1 155 3.14E-23 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily AMJ96_CH02879 ef887162cc8c775d6f79d09472e34652 271 Pfam PF09828 Chromate resistance exported protein 121 254 4.0E-49 T 12-10-2018 IPR018634 Chromate resistance exported protein AMJ96_CH01728 ef85c7d272208185f9139693e7bd00ec 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 5.0E-22 T 12-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01728 ef85c7d272208185f9139693e7bd00ec 101 SUPERFAMILY SSF57716 2 101 7.13E-34 T 12-10-2018 AMJ96_CH01728 ef85c7d272208185f9139693e7bd00ec 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 25.028 T 12-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid AMJ96_CH01728 ef85c7d272208185f9139693e7bd00ec 101 Gene3D G3DSA:4.10.830.10 41 101 2.8E-20 T 12-10-2018 AMJ96_CH01728 ef85c7d272208185f9139693e7bd00ec 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 12-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH02931 6fdbcf562986e4d3b47acc35293255b1 138 Pfam PF01638 HxlR-like helix-turn-helix 38 124 1.7E-28 T 12-10-2018 IPR002577 Helix-turn-helix, HxlR type AMJ96_CH02931 6fdbcf562986e4d3b47acc35293255b1 138 SUPERFAMILY SSF46785 25 134 2.17E-34 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02931 6fdbcf562986e4d3b47acc35293255b1 138 Gene3D G3DSA:1.10.10.10 14 137 1.6E-41 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01995 17a0ed0af9a30a7f3aa429ff72dcfaff 809 Pfam PF03772 Competence protein 294 581 4.1E-54 T 12-10-2018 IPR004477 ComEC/Rec2-related protein AMJ96_CH01995 17a0ed0af9a30a7f3aa429ff72dcfaff 809 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 315 513 1.3E-17 T 12-10-2018 IPR004477 ComEC/Rec2-related protein AMJ96_CH01995 17a0ed0af9a30a7f3aa429ff72dcfaff 809 Pfam PF13567 Domain of unknown function (DUF4131) 93 240 1.8E-11 T 12-10-2018 IPR025405 Domain of unknown function DUF4131 AMJ96_CH02690 eaae3ad0fb7d72b71b88896313ddffab 159 Pfam PF13358 DDE superfamily endonuclease 5 126 7.7E-33 T 12-10-2018 IPR038717 Tc1-like transposase, DDE domain AMJ96_CH02690 eaae3ad0fb7d72b71b88896313ddffab 159 Gene3D G3DSA:3.30.420.470 5 153 1.2E-16 T 12-10-2018 AMJ96_CH01637 ed8fb61ec1abff4050f3b18125eb8146 396 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 1 396 48.113 T 12-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01637 ed8fb61ec1abff4050f3b18125eb8146 396 SUPERFAMILY SSF56762 18 396 9.94E-137 T 12-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01637 ed8fb61ec1abff4050f3b18125eb8146 396 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 122 396 3.9E-119 T 12-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01637 ed8fb61ec1abff4050f3b18125eb8146 396 Gene3D G3DSA:1.10.645.20 6 396 5.8E-169 T 12-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01637 ed8fb61ec1abff4050f3b18125eb8146 396 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 8 396 3.3E-175 T 12-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01637 ed8fb61ec1abff4050f3b18125eb8146 396 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 45 56 - T 12-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_PC00354 c85ed1c6268b7035befb3a64525ca656 194 PIRSF PIRSF022704 1 194 8.2E-71 T 12-10-2018 IPR015987 Uncharacterised conserved protein UCP022704 AMJ96_PC00354 c85ed1c6268b7035befb3a64525ca656 194 Pfam PF07081 Protein of unknown function (DUF1349) 10 183 4.0E-63 T 12-10-2018 IPR009784 Protein of unknown function DUF1349 AMJ96_PC00354 c85ed1c6268b7035befb3a64525ca656 194 Gene3D G3DSA:2.60.120.200 3 194 4.7E-62 T 12-10-2018 AMJ96_PC00354 c85ed1c6268b7035befb3a64525ca656 194 SUPERFAMILY SSF49899 4 182 5.94E-29 T 12-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily AMJ96_CH00195 6fcf138f1bc0565b6e6cbae96fde6693 367 Pfam PF02653 Branched-chain amino acid transport system / permease component 59 346 8.3E-32 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH01969 62daa902d8ae99329f1f37193cd7745a 117 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 34 112 1.4E-33 T 12-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 AMJ96_CH01969 62daa902d8ae99329f1f37193cd7745a 117 SUPERFAMILY SSF54736 32 116 4.76E-32 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMJ96_CH01969 62daa902d8ae99329f1f37193cd7745a 117 Gene3D G3DSA:3.30.1390.10 13 117 2.6E-43 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AMJ96_CH01969 62daa902d8ae99329f1f37193cd7745a 117 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 23 112 28.255 T 12-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS AMJ96_CH02415 e28a795dc65012e98694882950a44e61 270 SUPERFAMILY SSF56300 5 252 4.62E-36 T 12-10-2018 AMJ96_CH02415 e28a795dc65012e98694882950a44e61 270 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 9 224 7.7E-12 T 12-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 AMJ96_CH02415 e28a795dc65012e98694882950a44e61 270 Gene3D G3DSA:3.60.21.10 5 246 5.6E-21 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like AMJ96_PC00383 0ddfc92d8dd1889e7e894d1688ab1d5d 161 Pfam PF04657 Putative inner membrane exporter, YdcZ 13 152 6.5E-28 T 12-10-2018 IPR006750 Putative inner membrane exporter, YdcZ AMJ96_PC00383 0ddfc92d8dd1889e7e894d1688ab1d5d 161 SUPERFAMILY SSF103481 53 158 3.27E-5 T 12-10-2018 AMJ96_CH03307 bf5f0252fae20766e2b381604c52da0d 371 SUPERFAMILY SSF48371 32 240 1.34E-42 T 12-10-2018 IPR016024 Armadillo-type fold AMJ96_CH03307 bf5f0252fae20766e2b381604c52da0d 371 Gene3D G3DSA:1.25.40.290 124 240 5.0E-34 T 12-10-2018 AMJ96_CH03307 bf5f0252fae20766e2b381604c52da0d 371 Pfam PF08713 DNA alkylation repair enzyme 124 225 2.0E-9 T 12-10-2018 IPR014825 DNA alkylation repair enzyme AMJ96_PB00203 00ab9eeb3f87772e0417c3b4d139f05b 396 Pfam PF06666 Protein of unknown function (DUF1173) 4 387 9.3E-157 T 12-10-2018 IPR009553 Protein of unknown function DUF1173 AMJ96_CH02973 d68465baa6a8007f1645a2dd65949595 300 Gene3D G3DSA:1.10.10.10 8 94 6.7E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02973 d68465baa6a8007f1645a2dd65949595 300 SUPERFAMILY SSF53850 93 298 9.01E-44 T 12-10-2018 AMJ96_CH02973 d68465baa6a8007f1645a2dd65949595 300 Pfam PF03466 LysR substrate binding domain 92 295 3.2E-40 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH02973 d68465baa6a8007f1645a2dd65949595 300 Gene3D G3DSA:3.40.190.10 95 295 1.1E-62 T 12-10-2018 AMJ96_CH02973 d68465baa6a8007f1645a2dd65949595 300 SUPERFAMILY SSF46785 10 115 3.54E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02973 d68465baa6a8007f1645a2dd65949595 300 Gene3D G3DSA:3.40.190.10 167 268 1.1E-62 T 12-10-2018 AMJ96_CH02973 d68465baa6a8007f1645a2dd65949595 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 67 2.4E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH00813 b9ba4ef7812021ac5980f36a8d221199 459 SUPERFAMILY SSF53067 255 443 3.02E-39 T 12-10-2018 AMJ96_CH00813 b9ba4ef7812021ac5980f36a8d221199 459 Gene3D G3DSA:3.30.420.40 113 250 1.1E-42 T 12-10-2018 AMJ96_CH00813 b9ba4ef7812021ac5980f36a8d221199 459 Gene3D G3DSA:3.30.420.150 252 444 3.5E-53 T 12-10-2018 AMJ96_CH00813 b9ba4ef7812021ac5980f36a8d221199 459 SUPERFAMILY SSF53067 128 250 9.99E-36 T 12-10-2018 AMJ96_CH00813 b9ba4ef7812021ac5980f36a8d221199 459 Pfam PF02541 Ppx/GppA phosphatase family 149 442 1.1E-44 T 12-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 AMJ96_PB00022 feb191cf66648fbd7d5430763ef32b9c 495 SUPERFAMILY SSF52200 24 128 1.96E-7 T 12-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily AMJ96_PB00022 feb191cf66648fbd7d5430763ef32b9c 495 Pfam PF13676 TIR domain 35 129 1.7E-10 T 12-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 AMJ96_PB00022 feb191cf66648fbd7d5430763ef32b9c 495 Gene3D G3DSA:3.40.50.10140 32 148 5.3E-13 T 12-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily AMJ96_PB00119 5bc32f5363f5fd431eb7e6f61f158846 377 Pfam PF15609 Phosphoribosyl transferase 30 210 4.2E-51 T 12-10-2018 AMJ96_PB00119 5bc32f5363f5fd431eb7e6f61f158846 377 PIRSF PIRSF020967 1 374 3.6E-113 T 12-10-2018 IPR011214 Uncharacterised conserved protein UCP020967 AMJ96_PB00119 5bc32f5363f5fd431eb7e6f61f158846 377 SUPERFAMILY SSF53271 35 205 7.12E-7 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like AMJ96_PB00119 5bc32f5363f5fd431eb7e6f61f158846 377 Pfam PF12500 TRSP domain C terminus to PRTase_2 265 354 1.5E-16 T 12-10-2018 IPR022537 TRSP domain AMJ96_PA00161 1908ba411a1af60897b1774d3a2ce6ce 346 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 12-10-2018 AMJ96_PA00161 1908ba411a1af60897b1774d3a2ce6ce 346 SUPERFAMILY SSF47413 1 59 1.91E-16 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PA00161 1908ba411a1af60897b1774d3a2ce6ce 346 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 5.2E-5 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00161 1908ba411a1af60897b1774d3a2ce6ce 346 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 5.2E-5 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00161 1908ba411a1af60897b1774d3a2ce6ce 346 SMART SM00354 1 71 8.3E-30 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00161 1908ba411a1af60897b1774d3a2ce6ce 346 Gene3D G3DSA:1.10.260.40 2 55 3.3E-20 T 12-10-2018 AMJ96_PA00161 1908ba411a1af60897b1774d3a2ce6ce 346 Gene3D G3DSA:3.40.50.2300 155 288 6.5E-73 T 12-10-2018 AMJ96_PA00161 1908ba411a1af60897b1774d3a2ce6ce 346 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 3.6E-15 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_PA00161 1908ba411a1af60897b1774d3a2ce6ce 346 Pfam PF13377 Periplasmic binding protein-like domain 163 323 2.4E-32 T 12-10-2018 AMJ96_PA00161 1908ba411a1af60897b1774d3a2ce6ce 346 Gene3D G3DSA:3.40.50.2300 56 304 6.5E-73 T 12-10-2018 AMJ96_PA00161 1908ba411a1af60897b1774d3a2ce6ce 346 SUPERFAMILY SSF53822 58 309 1.52E-65 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PA00001 f5a3c845922f38357c496c435420c1b6 107 SUPERFAMILY SSF143011 1 96 5.69E-7 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily AMJ96_PA00001 f5a3c845922f38357c496c435420c1b6 107 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 5 96 9.7E-20 T 12-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family AMJ96_PA00001 f5a3c845922f38357c496c435420c1b6 107 Gene3D G3DSA:3.30.2310.20 1 101 1.1E-20 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily AMJ96_CH00409 6e9a247d42350832db1aca0ddba9282a 291 Pfam PF13444 Acetyltransferase (GNAT) domain 52 162 2.3E-33 T 12-10-2018 AMJ96_CH00409 6e9a247d42350832db1aca0ddba9282a 291 SUPERFAMILY SSF55729 35 258 6.33E-41 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH00409 6e9a247d42350832db1aca0ddba9282a 291 Gene3D G3DSA:3.40.630.30 34 187 2.0E-21 T 12-10-2018 AMJ96_CH01597 15b05925b318153853cb31d246e51bb0 367 Pfam PF02628 Cytochrome oxidase assembly protein 28 346 2.2E-114 T 12-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 AMJ96_CH01597 15b05925b318153853cb31d246e51bb0 367 Hamap MF_01665 Heme A synthase [ctaA]. 23 356 25.822 T 12-10-2018 IPR023754 Heme A synthase, type 2 GO:0006784|GO:0016020|GO:0016627|GO:0055114 Reactome: R-HSA-189451 AMJ96_CH02659 ce1b091427a9c2b4dedf0c872a5b661d 1087 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 3 1087 13.74 T 12-10-2018 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH02659 ce1b091427a9c2b4dedf0c872a5b661d 1087 Gene3D G3DSA:3.20.20.140 1 249 1.5E-56 T 12-10-2018 AMJ96_CH02659 ce1b091427a9c2b4dedf0c872a5b661d 1087 Pfam PF02811 PHP domain 5 119 7.2E-8 T 12-10-2018 IPR004013 PHP domain GO:0003824 AMJ96_CH02659 ce1b091427a9c2b4dedf0c872a5b661d 1087 SMART SM00481 4 71 1.0E-9 T 12-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal AMJ96_CH02659 ce1b091427a9c2b4dedf0c872a5b661d 1087 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 4 982 3.5E-165 T 12-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH02659 ce1b091427a9c2b4dedf0c872a5b661d 1087 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 272 694 8.1E-147 T 12-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_CH02659 ce1b091427a9c2b4dedf0c872a5b661d 1087 SUPERFAMILY SSF89550 10 243 9.61E-5 T 12-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AMJ96_CH02659 ce1b091427a9c2b4dedf0c872a5b661d 1087 Pfam PF14579 Helix-hairpin-helix motif 767 859 5.4E-23 T 12-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AMJ96_PC00118 05bf49e862267079f8ae0bb077abc988 388 Gene3D G3DSA:3.30.390.10 19 376 7.2E-113 T 12-10-2018 IPR029017 Enolase-like, N-terminal AMJ96_PC00118 05bf49e862267079f8ae0bb077abc988 388 SUPERFAMILY SSF51604 104 384 1.31E-73 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_PC00118 05bf49e862267079f8ae0bb077abc988 388 Gene3D G3DSA:3.20.20.120 110 371 7.2E-113 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_PC00118 05bf49e862267079f8ae0bb077abc988 388 SUPERFAMILY SSF54826 1 121 2.46E-30 T 12-10-2018 AMJ96_PC00118 05bf49e862267079f8ae0bb077abc988 388 Pfam PF13378 Enolase C-terminal domain-like 140 378 1.1E-60 T 12-10-2018 IPR029065 Enolase C-terminal domain-like AMJ96_PC00118 05bf49e862267079f8ae0bb077abc988 388 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 16 116 1.1E-20 T 12-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMJ96_PC00118 05bf49e862267079f8ae0bb077abc988 388 SMART SM00922 137 259 7.0E-23 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMJ96_CH01911 ab1cd82212aca6bbd67bcbd4e4e72d92 164 SUPERFAMILY SSF53098 18 151 5.92E-37 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_CH01911 ab1cd82212aca6bbd67bcbd4e4e72d92 164 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 17 152 22.504 T 12-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMJ96_CH01911 ab1cd82212aca6bbd67bcbd4e4e72d92 164 Gene3D G3DSA:3.30.420.140 17 159 3.1E-40 T 12-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 AMJ96_CH01911 ab1cd82212aca6bbd67bcbd4e4e72d92 164 Pfam PF03652 Holliday junction resolvase 18 149 5.5E-37 T 12-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMJ96_CH01911 ab1cd82212aca6bbd67bcbd4e4e72d92 164 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 21 149 5.4E-29 T 12-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AMJ96_CH01911 ab1cd82212aca6bbd67bcbd4e4e72d92 164 SMART SM00732 17 117 1.1E-28 T 12-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 AMJ96_CH01717 955aee6ee480c33585bda34971870574 97 SUPERFAMILY SSF54189 5 93 2.55E-33 T 12-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 AMJ96_CH01717 955aee6ee480c33585bda34971870574 97 Pfam PF00276 Ribosomal protein L23 8 93 3.9E-33 T 12-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01717 955aee6ee480c33585bda34971870574 97 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 7 96 22.053 T 12-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01717 955aee6ee480c33585bda34971870574 97 Gene3D G3DSA:3.30.70.330 5 96 1.6E-33 T 12-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily AMJ96_CH02746 026048e66ffb56e73abc278535d61e0b 279 SUPERFAMILY SSF51735 4 271 1.01E-46 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02746 026048e66ffb56e73abc278535d61e0b 279 Gene3D G3DSA:3.40.50.720 6 259 6.0E-65 T 12-10-2018 AMJ96_CH02746 026048e66ffb56e73abc278535d61e0b 279 Gene3D G3DSA:3.90.25.10 129 261 6.0E-65 T 12-10-2018 AMJ96_CH02746 026048e66ffb56e73abc278535d61e0b 279 Pfam PF13460 NAD(P)H-binding 9 175 1.2E-13 T 12-10-2018 IPR016040 NAD(P)-binding domain AMJ96_CH03263 7547f543c471561e11474d1d344b5b5b 473 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 201 368 4.3E-25 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMJ96_CH03263 7547f543c471561e11474d1d344b5b5b 473 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 159 6.7E-27 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AMJ96_CH03263 7547f543c471561e11474d1d344b5b5b 473 Gene3D G3DSA:3.40.50.300 197 375 2.6E-46 T 12-10-2018 AMJ96_CH03263 7547f543c471561e11474d1d344b5b5b 473 SUPERFAMILY SSF52540 138 466 1.91E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03263 7547f543c471561e11474d1d344b5b5b 473 Hamap MF_00195 GTPase Der [der]. 2 463 36.264 T 12-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 AMJ96_CH03263 7547f543c471561e11474d1d344b5b5b 473 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 54 69 6.3E-6 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 AMJ96_CH03263 7547f543c471561e11474d1d344b5b5b 473 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 6.3E-6 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 AMJ96_CH03263 7547f543c471561e11474d1d344b5b5b 473 PIRSF PIRSF006485 1 468 6.1E-158 T 12-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 AMJ96_CH03263 7547f543c471561e11474d1d344b5b5b 473 SUPERFAMILY SSF52540 3 165 3.22E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03263 7547f543c471561e11474d1d344b5b5b 473 Pfam PF01926 50S ribosome-binding GTPase 204 322 1.3E-19 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 AMJ96_CH03263 7547f543c471561e11474d1d344b5b5b 473 Pfam PF01926 50S ribosome-binding GTPase 5 120 2.9E-28 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 AMJ96_CH03263 7547f543c471561e11474d1d344b5b5b 473 Gene3D G3DSA:3.30.300.20 380 462 6.2E-28 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta AMJ96_CH03263 7547f543c471561e11474d1d344b5b5b 473 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 380 460 9.6E-30 T 12-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like AMJ96_CH03263 7547f543c471561e11474d1d344b5b5b 473 Gene3D G3DSA:3.40.50.300 2 163 7.9E-44 T 12-10-2018 AMJ96_CH03263 7547f543c471561e11474d1d344b5b5b 473 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 4 460 7.0E-166 T 12-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 AMJ96_PD00447 298696ca83810b1d3dab337556f004ea 222 SUPERFAMILY SSF56784 6 220 2.75E-40 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_PD00447 298696ca83810b1d3dab337556f004ea 222 Gene3D G3DSA:3.40.50.1000 7 200 1.5E-42 T 12-10-2018 IPR023214 HAD superfamily AMJ96_PD00447 298696ca83810b1d3dab337556f004ea 222 Gene3D G3DSA:1.10.150.750 20 93 1.5E-42 T 12-10-2018 AMJ96_PD00447 298696ca83810b1d3dab337556f004ea 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 88 189 4.0E-9 T 12-10-2018 AMJ96_PD00447 298696ca83810b1d3dab337556f004ea 222 TIGRFAM TIGR01428 HAD_type_II: haloacid dehalogenase, type II 7 200 1.3E-59 T 12-10-2018 IPR006328 L-2-Haloacid dehalogenase GO:0019120 KEGG: 00361+3.8.1.2|KEGG: 00625+3.8.1.2|MetaCyc: PWY-7425 AMJ96_PD00447 298696ca83810b1d3dab337556f004ea 222 TIGRFAM TIGR01493 HAD-SF-IA-v2: HAD hydrolase, family IA, variant 2 8 183 3.4E-13 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH01983 2a3e90a6f5e7b31b6843a83c9e875a25 240 PIRSF PIRSF005650 3 240 1.8E-86 T 12-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 AMJ96_CH01983 2a3e90a6f5e7b31b6843a83c9e875a25 240 Pfam PF00696 Amino acid kinase family 8 217 4.4E-30 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 AMJ96_CH01983 2a3e90a6f5e7b31b6843a83c9e875a25 240 Hamap MF_01220_B Uridylate kinase [pyrH]. 5 238 41.272 T 12-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 AMJ96_CH01983 2a3e90a6f5e7b31b6843a83c9e875a25 240 Gene3D G3DSA:3.40.1160.10 4 240 1.6E-72 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMJ96_CH01983 2a3e90a6f5e7b31b6843a83c9e875a25 240 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 7 237 3.8E-93 T 12-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 AMJ96_CH01983 2a3e90a6f5e7b31b6843a83c9e875a25 240 SUPERFAMILY SSF53633 5 237 2.09E-67 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily AMJ96_PB00105 328b2ee08df0433accdd4eb5b852b2a3 269 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 25 46 5.4E-14 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AMJ96_PB00105 328b2ee08df0433accdd4eb5b852b2a3 269 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 85 104 5.4E-14 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AMJ96_PB00105 328b2ee08df0433accdd4eb5b852b2a3 269 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 187 209 5.4E-14 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AMJ96_PB00105 328b2ee08df0433accdd4eb5b852b2a3 269 Pfam PF01311 Bacterial export proteins, family 1 18 251 2.7E-34 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AMJ96_CH02469 d480713378a74553a81a970000980ade 172 SUPERFAMILY SSF52540 4 164 1.15E-22 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02469 d480713378a74553a81a970000980ade 172 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 6 163 8.5E-54 T 12-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 AMJ96_CH02469 d480713378a74553a81a970000980ade 172 Gene3D G3DSA:2.20.25.120 50 82 2.1E-53 T 12-10-2018 AMJ96_CH02469 d480713378a74553a81a970000980ade 172 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 6 139 3.5E-49 T 12-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 AMJ96_CH02469 d480713378a74553a81a970000980ade 172 Gene3D G3DSA:3.40.50.300 8 162 2.1E-53 T 12-10-2018 AMJ96_CH00460 561cabacc519348ac8a3b40789972590 81 Pfam PF06169 Protein of unknown function (DUF982) 7 78 3.1E-24 T 12-10-2018 IPR010385 Protein of unknown function DUF982 AMJ96_PA00064 a3ae1eb24776ef543717d90b18b506ae 277 Pfam PF04962 KduI/IolB family 12 261 1.1E-63 T 12-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 AMJ96_PA00064 a3ae1eb24776ef543717d90b18b506ae 277 Gene3D G3DSA:2.60.120.10 117 267 1.2E-37 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PA00064 a3ae1eb24776ef543717d90b18b506ae 277 SUPERFAMILY SSF51182 13 248 4.45E-33 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_PA00064 a3ae1eb24776ef543717d90b18b506ae 277 Gene3D G3DSA:2.60.120.10 12 116 2.3E-13 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH03605 00242785423eba0e5a4ef22f4480f139 459 Pfam PF02563 Polysaccharide biosynthesis/export protein 31 102 4.6E-10 T 12-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 AMJ96_CH03605 00242785423eba0e5a4ef22f4480f139 459 Pfam PF10531 SLBB domain 122 155 8.6E-7 T 12-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03605 00242785423eba0e5a4ef22f4480f139 459 Gene3D G3DSA:3.30.1950.10 39 117 3.5E-5 T 12-10-2018 AMJ96_CH03605 00242785423eba0e5a4ef22f4480f139 459 Gene3D G3DSA:3.10.560.10 118 239 1.1E-6 T 12-10-2018 AMJ96_CH04182 3dca0fd97b044cf9956405e9532818c8 166 SUPERFAMILY SSF52788 4 151 1.7E-47 T 12-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily AMJ96_CH04182 3dca0fd97b044cf9956405e9532818c8 166 SMART SM00226 4 150 1.8E-48 T 12-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMJ96_CH04182 3dca0fd97b044cf9956405e9532818c8 166 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 83 98 1.7E-24 T 12-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMJ96_CH04182 3dca0fd97b044cf9956405e9532818c8 166 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 122 137 1.7E-24 T 12-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMJ96_CH04182 3dca0fd97b044cf9956405e9532818c8 166 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 49 65 1.7E-24 T 12-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMJ96_CH04182 3dca0fd97b044cf9956405e9532818c8 166 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 6 23 1.7E-24 T 12-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AMJ96_CH04182 3dca0fd97b044cf9956405e9532818c8 166 Gene3D G3DSA:3.40.50.2300 1 159 1.4E-54 T 12-10-2018 AMJ96_CH04182 3dca0fd97b044cf9956405e9532818c8 166 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 6 148 7.8E-40 T 12-10-2018 IPR023485 Phosphotyrosine protein phosphatase I AMJ96_PB00008 2face224c1a56c61a85fb3d04dbc007d 70 SUPERFAMILY SSF56349 3 63 3.53E-9 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AMJ96_PB00008 2face224c1a56c61a85fb3d04dbc007d 70 Gene3D G3DSA:1.10.443.10 1 63 3.2E-8 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 AMJ96_CH04366 3a4ad20f83e46cec0bbb6eabffdbbc30 318 Hamap MF_00188 Protease HtpX [htpX]. 3 278 29.052 T 12-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 AMJ96_CH04366 3a4ad20f83e46cec0bbb6eabffdbbc30 318 Pfam PF01435 Peptidase family M48 67 278 4.2E-42 T 12-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AMJ96_CH04366 3a4ad20f83e46cec0bbb6eabffdbbc30 318 Gene3D G3DSA:3.30.2010.10 57 148 2.9E-31 T 12-10-2018 AMJ96_CH01328 019659d3918b4d3734b8a3191a45796d 141 PIRSF PIRSF002721 1 141 1.1E-52 T 12-10-2018 IPR016364 Surface antigen, Rickettsia type AMJ96_CH02275 e89957eed09245c48c0a54759d6f1b6c 329 Pfam PF07786 Protein of unknown function (DUF1624) 16 243 5.4E-70 T 12-10-2018 IPR012429 Domain of unknown function DUF1624 Reactome: R-HSA-2024096|Reactome: R-HSA-2206291|Reactome: R-HSA-6798695 AMJ96_CH04351 384597e62c740a9bc7df413c6ba27787 423 Pfam PF02687 FtsX-like permease family 324 417 1.6E-11 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AMJ96_PC00297 3feb325545f53e26532f94c281a03ada 106 Hamap MF_01663 L-rhamnose mutarotase [rhaM]. 3 106 32.358 T 12-10-2018 IPR013448 L-rhamnose mutarotase GO:0005737|GO:0016857|GO:0019299 AMJ96_PC00297 3feb325545f53e26532f94c281a03ada 106 Pfam PF05336 L-rhamnose mutarotase 6 99 5.3E-28 T 12-10-2018 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 AMJ96_PC00297 3feb325545f53e26532f94c281a03ada 106 TIGRFAM TIGR02625 YiiL_rotase: L-rhamnose mutarotase 6 105 4.7E-34 T 12-10-2018 IPR013448 L-rhamnose mutarotase GO:0005737|GO:0016857|GO:0019299 AMJ96_PC00297 3feb325545f53e26532f94c281a03ada 106 Gene3D G3DSA:3.30.70.100 1 99 1.6E-43 T 12-10-2018 AMJ96_PC00297 3feb325545f53e26532f94c281a03ada 106 SUPERFAMILY SSF54909 3 105 4.96E-37 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH02342 618abb6419e83704849f372c2f2ef06b 184 Gene3D G3DSA:3.20.170.30 96 183 1.5E-28 T 12-10-2018 AMJ96_CH02342 618abb6419e83704849f372c2f2ef06b 184 Hamap MF_00299 Probable RNA 2'-phosphotransferase [kptA]. 6 177 31.674 T 12-10-2018 IPR022928 RNA 2'-phosphotransferase KptA, putative GO:0016773 AMJ96_CH02342 618abb6419e83704849f372c2f2ef06b 184 Gene3D G3DSA:1.10.10.970 7 76 2.1E-19 T 12-10-2018 AMJ96_CH02342 618abb6419e83704849f372c2f2ef06b 184 SUPERFAMILY SSF56399 9 178 1.15E-59 T 12-10-2018 AMJ96_CH02342 618abb6419e83704849f372c2f2ef06b 184 Pfam PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family 7 170 7.5E-43 T 12-10-2018 IPR002745 Phosphotransferase KptA/Tpt1 GO:0006388|GO:0016772 AMJ96_CH01160 b2305727b6b5b3203c79da5d648255fd 500 SUPERFAMILY SSF50156 403 496 1.18E-18 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 AMJ96_CH01160 b2305727b6b5b3203c79da5d648255fd 500 Gene3D G3DSA:2.30.42.10 282 389 3.7E-27 T 12-10-2018 AMJ96_CH01160 b2305727b6b5b3203c79da5d648255fd 500 Gene3D G3DSA:2.30.42.10 400 499 2.7E-22 T 12-10-2018 AMJ96_CH01160 b2305727b6b5b3203c79da5d648255fd 500 SUPERFAMILY SSF50494 50 282 1.3E-62 T 12-10-2018 IPR009003 Peptidase S1, PA clan AMJ96_CH01160 b2305727b6b5b3203c79da5d648255fd 500 Gene3D G3DSA:2.40.10.120 49 280 1.8E-81 T 12-10-2018 AMJ96_CH01160 b2305727b6b5b3203c79da5d648255fd 500 SUPERFAMILY SSF50156 245 370 3.94E-22 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 AMJ96_CH01160 b2305727b6b5b3203c79da5d648255fd 500 Pfam PF13180 PDZ domain 287 378 3.3E-18 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH01160 b2305727b6b5b3203c79da5d648255fd 500 Pfam PF13180 PDZ domain 403 495 3.1E-13 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH01160 b2305727b6b5b3203c79da5d648255fd 500 SMART SM00228 403 488 3.8E-11 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH01160 b2305727b6b5b3203c79da5d648255fd 500 SMART SM00228 287 369 6.8E-11 T 12-10-2018 IPR001478 PDZ domain GO:0005515 AMJ96_CH01160 b2305727b6b5b3203c79da5d648255fd 500 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 50 494 1.1E-153 T 12-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 AMJ96_CH01160 b2305727b6b5b3203c79da5d648255fd 500 Pfam PF13365 Trypsin-like peptidase domain 114 248 9.5E-35 T 12-10-2018 AMJ96_CH01160 b2305727b6b5b3203c79da5d648255fd 500 PRINTS PR00834 HtrA/DegQ protease family signature 241 258 1.2E-54 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01160 b2305727b6b5b3203c79da5d648255fd 500 PRINTS PR00834 HtrA/DegQ protease family signature 327 339 1.2E-54 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01160 b2305727b6b5b3203c79da5d648255fd 500 PRINTS PR00834 HtrA/DegQ protease family signature 144 164 1.2E-54 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01160 b2305727b6b5b3203c79da5d648255fd 500 PRINTS PR00834 HtrA/DegQ protease family signature 219 236 1.2E-54 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01160 b2305727b6b5b3203c79da5d648255fd 500 PRINTS PR00834 HtrA/DegQ protease family signature 185 209 1.2E-54 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01160 b2305727b6b5b3203c79da5d648255fd 500 PRINTS PR00834 HtrA/DegQ protease family signature 123 135 1.2E-54 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AMJ96_CH01471 114bef47a92f73b4b058d863e7289709 158 Gene3D G3DSA:2.170.150.70 7 113 7.8E-13 T 12-10-2018 AMJ96_CH01471 114bef47a92f73b4b058d863e7289709 158 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 28 108 3.5E-18 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMJ96_CH01471 114bef47a92f73b4b058d863e7289709 158 SUPERFAMILY SSF51316 3 128 5.65E-41 T 12-10-2018 IPR011057 Mss4-like superfamily AMJ96_CH03234 1495286a0e27e73982d70346c716164d 316 Pfam PF06904 Extensin-like protein C-terminus 137 315 1.3E-53 T 12-10-2018 IPR009683 Extensin-like, C-terminal AMJ96_CH00277 057b80fad4741cea90578814b4336426 119 Gene3D G3DSA:3.10.450.50 1 118 9.7E-43 T 12-10-2018 AMJ96_CH00277 057b80fad4741cea90578814b4336426 119 SUPERFAMILY SSF54427 2 118 8.78E-35 T 12-10-2018 IPR032710 NTF2-like domain superfamily AMJ96_CH00277 057b80fad4741cea90578814b4336426 119 Pfam PF12893 Putative lumazine-binding 2 116 3.8E-37 T 12-10-2018 IPR039437 Putative lumazine-binding AMJ96_CH02754 11889f280dbfa66559e0fb0b021a7410 168 Gene3D G3DSA:3.40.630.30 4 166 4.3E-31 T 12-10-2018 AMJ96_CH02754 11889f280dbfa66559e0fb0b021a7410 168 SUPERFAMILY SSF55729 5 166 4.8E-29 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH02754 11889f280dbfa66559e0fb0b021a7410 168 Pfam PF00583 Acetyltransferase (GNAT) family 38 140 1.9E-14 T 12-10-2018 IPR000182 GNAT domain AMJ96_PD00466 f4b29924e4132781bce4d77f9bc0bffe 322 Gene3D G3DSA:3.40.50.1100 55 151 2.4E-110 T 12-10-2018 AMJ96_PD00466 f4b29924e4132781bce4d77f9bc0bffe 322 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 47 60 - T 12-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AMJ96_PD00466 f4b29924e4132781bce4d77f9bc0bffe 322 SUPERFAMILY SSF53686 8 315 1.96E-95 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme AMJ96_PD00466 f4b29924e4132781bce4d77f9bc0bffe 322 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 20 309 8.7E-85 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme AMJ96_PD00466 f4b29924e4132781bce4d77f9bc0bffe 322 Gene3D G3DSA:3.40.50.1100 12 314 2.4E-110 T 12-10-2018 AMJ96_CH02159 74cd882c6f490731f591995daaa6e8f7 220 Pfam PF06776 Invasion associated locus B (IalB) protein 53 180 2.5E-34 T 12-10-2018 IPR010642 Invasion protein B AMJ96_CH02159 74cd882c6f490731f591995daaa6e8f7 220 Gene3D G3DSA:2.60.40.1880 51 187 2.7E-19 T 12-10-2018 IPR038696 Invasion protein B superfamily AMJ96_CH04279 1a7d2af22bb231643489d4b774b6fcf7 512 Pfam PF07690 Major Facilitator Superfamily 25 416 8.9E-48 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH04279 1a7d2af22bb231643489d4b774b6fcf7 512 Gene3D G3DSA:1.20.1720.10 20 233 1.5E-53 T 12-10-2018 AMJ96_CH04279 1a7d2af22bb231643489d4b774b6fcf7 512 SUPERFAMILY SSF103473 7 497 9.16E-71 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH02304 980bbf2a3e01cd805523fe905a999798 954 Pfam PF02347 Glycine cleavage system P-protein 20 444 1.1E-180 T 12-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 AMJ96_CH02304 980bbf2a3e01cd805523fe905a999798 954 Pfam PF02347 Glycine cleavage system P-protein 607 732 8.8E-9 T 12-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 AMJ96_CH02304 980bbf2a3e01cd805523fe905a999798 954 SUPERFAMILY SSF53383 21 421 5.44E-101 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH02304 980bbf2a3e01cd805523fe905a999798 954 Gene3D G3DSA:3.90.1150.10 759 896 5.7E-41 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH02304 980bbf2a3e01cd805523fe905a999798 954 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 21 943 0.0 T 12-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 AMJ96_CH02304 980bbf2a3e01cd805523fe905a999798 954 Gene3D G3DSA:3.40.640.10 100 358 1.5E-107 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH02304 980bbf2a3e01cd805523fe905a999798 954 Gene3D G3DSA:3.40.640.10 521 748 7.4E-60 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH02304 980bbf2a3e01cd805523fe905a999798 954 SUPERFAMILY SSF53383 475 945 9.08E-100 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH02304 980bbf2a3e01cd805523fe905a999798 954 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 12 949 25.619 T 12-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 AMJ96_CH01459 cfd98cc91fa3633d27d6fedb72acfdc4 116 SUPERFAMILY SSF55961 13 101 4.45E-14 T 12-10-2018 AMJ96_CH01459 cfd98cc91fa3633d27d6fedb72acfdc4 116 Gene3D G3DSA:3.30.530.20 2 110 1.7E-8 T 12-10-2018 IPR023393 START-like domain superfamily AMJ96_CH01038 07f581356de1aa90e0e30a4b38a6987d 1151 SMART SM00490 745 832 7.2E-8 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH01038 07f581356de1aa90e0e30a4b38a6987d 1151 Pfam PF00271 Helicase conserved C-terminal domain 725 830 4.4E-7 T 12-10-2018 IPR001650 Helicase, C-terminal AMJ96_CH01038 07f581356de1aa90e0e30a4b38a6987d 1151 SMART SM00487 437 650 8.4E-16 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AMJ96_CH01038 07f581356de1aa90e0e30a4b38a6987d 1151 Gene3D G3DSA:3.40.50.300 636 863 5.0E-49 T 12-10-2018 AMJ96_CH01038 07f581356de1aa90e0e30a4b38a6987d 1151 Gene3D G3DSA:3.90.1570.30 241 355 8.8E-12 T 12-10-2018 AMJ96_CH01038 07f581356de1aa90e0e30a4b38a6987d 1151 Pfam PF04851 Type III restriction enzyme, res subunit 440 622 2.4E-34 T 12-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AMJ96_CH01038 07f581356de1aa90e0e30a4b38a6987d 1151 Pfam PF13643 Domain of unknown function (DUF4145) 37 126 1.4E-6 T 12-10-2018 IPR025285 Domain of unknown function DUF4145 AMJ96_CH01038 07f581356de1aa90e0e30a4b38a6987d 1151 Pfam PF08463 EcoEI R protein C-terminal 985 1146 4.4E-32 T 12-10-2018 IPR013670 EcoEI R protein C-terminal domain GO:0003677|GO:0003824|GO:0006304 AMJ96_CH01038 07f581356de1aa90e0e30a4b38a6987d 1151 SUPERFAMILY SSF52540 454 837 5.91E-32 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01038 07f581356de1aa90e0e30a4b38a6987d 1151 Gene3D G3DSA:3.40.50.300 421 635 6.5E-53 T 12-10-2018 AMJ96_PD00065 dc0db5596e3b42db2a6358c71c5c9a20 123 Gene3D G3DSA:3.40.50.2300 7 118 1.5E-7 T 12-10-2018 AMJ96_PB00205 5732bf5a8bef454793df2594fe81d25e 132 Pfam PF01850 PIN domain 4 116 1.1E-12 T 12-10-2018 IPR002716 PIN domain AMJ96_PB00205 5732bf5a8bef454793df2594fe81d25e 132 Gene3D G3DSA:3.40.50.1010 1 120 1.9E-9 T 12-10-2018 AMJ96_PB00205 5732bf5a8bef454793df2594fe81d25e 132 SUPERFAMILY SSF88723 2 125 1.57E-18 T 12-10-2018 IPR029060 PIN-like domain superfamily AMJ96_CH01860 4e548ada9baa8ed2c8422c404dd0aabc 290 Pfam PF10691 Protein of unknown function (DUF2497) 220 286 5.2E-24 T 12-10-2018 IPR019632 Protein of unknown function DUF2497 AMJ96_CH01859 185b6852133e74c5e14e8833df38cdae 221 Gene3D G3DSA:3.40.50.150 13 218 4.1E-46 T 12-10-2018 AMJ96_CH01859 185b6852133e74c5e14e8833df38cdae 221 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 9 189 1.6E-30 T 12-10-2018 AMJ96_CH01859 185b6852133e74c5e14e8833df38cdae 221 SUPERFAMILY SSF53335 1 199 1.32E-37 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH01720 3cb808044e9640176768b1b9bb562f40 129 ProSitePatterns PS00464 Ribosomal protein L22 signature. 95 119 - T 12-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AMJ96_CH01720 3cb808044e9640176768b1b9bb562f40 129 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 13 122 25.825 T 12-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01720 3cb808044e9640176768b1b9bb562f40 129 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 17 119 5.7E-33 T 12-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01720 3cb808044e9640176768b1b9bb562f40 129 Pfam PF00237 Ribosomal protein L22p/L17e 17 119 1.0E-32 T 12-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01720 3cb808044e9640176768b1b9bb562f40 129 Gene3D G3DSA:3.90.470.10 2 129 7.9E-42 T 12-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01720 3cb808044e9640176768b1b9bb562f40 129 SUPERFAMILY SSF54843 6 122 1.83E-40 T 12-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 AMJ96_CH03395 01926f05fb71e17126b9acefd9292023 330 Gene3D G3DSA:3.40.50.2300 32 315 1.9E-54 T 12-10-2018 AMJ96_CH03395 01926f05fb71e17126b9acefd9292023 330 Gene3D G3DSA:3.40.50.2300 135 324 1.9E-54 T 12-10-2018 AMJ96_CH03395 01926f05fb71e17126b9acefd9292023 330 SUPERFAMILY SSF53822 25 327 5.34E-42 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH03395 01926f05fb71e17126b9acefd9292023 330 Pfam PF13407 Periplasmic binding protein domain 28 307 5.8E-46 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_PD00061 7ddc3a16d3b9183c11a8f446e93c250e 182 Pfam PF04542 Sigma-70 region 2 30 96 6.5E-13 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_PD00061 7ddc3a16d3b9183c11a8f446e93c250e 182 Pfam PF08281 Sigma-70, region 4 122 174 5.8E-13 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AMJ96_PD00061 7ddc3a16d3b9183c11a8f446e93c250e 182 Gene3D G3DSA:1.10.10.10 96 181 1.8E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00061 7ddc3a16d3b9183c11a8f446e93c250e 182 Gene3D G3DSA:1.10.1740.10 5 95 5.7E-18 T 12-10-2018 AMJ96_PD00061 7ddc3a16d3b9183c11a8f446e93c250e 182 SUPERFAMILY SSF88659 119 178 1.07E-11 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like AMJ96_PD00061 7ddc3a16d3b9183c11a8f446e93c250e 182 SUPERFAMILY SSF88946 6 114 6.44E-21 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 AMJ96_PD00061 7ddc3a16d3b9183c11a8f446e93c250e 182 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 178 3.6E-22 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 AMJ96_CH03492 d273428f626c36dd308caf6d0f221e33 500 SUPERFAMILY SSF53098 9 500 1.26E-66 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_CH03492 d273428f626c36dd308caf6d0f221e33 500 SMART SM00950 149 488 0.001 T 12-10-2018 IPR003165 Piwi domain GO:0003676 AMJ96_CH03492 d273428f626c36dd308caf6d0f221e33 500 Gene3D G3DSA:3.30.420.10 272 496 1.4E-41 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_PC00298 41565c15b428883d99b747b70b31dd9e 335 Pfam PF02653 Branched-chain amino acid transport system / permease component 65 319 1.0E-42 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH01527 1cb02cb741ae710bf9912c68e7c781e0 289 SUPERFAMILY SSF53335 8 280 8.48E-92 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH01527 1cb02cb741ae710bf9912c68e7c781e0 289 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 279 2.4E-87 T 12-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 AMJ96_CH01527 1cb02cb741ae710bf9912c68e7c781e0 289 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 1 268 40.31 T 12-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 AMJ96_CH01527 1cb02cb741ae710bf9912c68e7c781e0 289 Gene3D G3DSA:3.40.50.150 1 289 2.4E-106 T 12-10-2018 AMJ96_CH03980 59000a2ca24db74e10213a9233ad00a1 130 PIRSF PIRSF009151 1 128 6.5E-63 T 12-10-2018 IPR008497 Protein of unknown function DUF779 AMJ96_CH03980 59000a2ca24db74e10213a9233ad00a1 130 Pfam PF05610 Protein of unknown function (DUF779) 20 113 1.2E-44 T 12-10-2018 IPR008497 Protein of unknown function DUF779 AMJ96_CH00216 e075b2415277ef1ab15f3c3562f84979 328 Pfam PF00482 Type II secretion system (T2SS), protein F 189 317 3.4E-21 T 12-10-2018 IPR018076 Type II secretion system F domain AMJ96_CH01816 fdbfb8cf7b1eb43cab5ba201f7732a96 204 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 201 30.636 T 12-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 AMJ96_CH01816 fdbfb8cf7b1eb43cab5ba201f7732a96 204 Pfam PF02525 Flavodoxin-like fold 3 199 1.1E-42 T 12-10-2018 IPR003680 Flavodoxin-like fold AMJ96_CH01816 fdbfb8cf7b1eb43cab5ba201f7732a96 204 Gene3D G3DSA:3.40.50.360 1 203 1.7E-56 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_CH01816 fdbfb8cf7b1eb43cab5ba201f7732a96 204 SUPERFAMILY SSF52218 1 200 4.82E-50 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_CH02530 d9b2cca3baa752fc3f78c66925493bf0 204 Pfam PF13529 Peptidase_C39 like family 5 173 2.0E-5 T 12-10-2018 IPR039564 Peptidase C39-like AMJ96_CH02530 d9b2cca3baa752fc3f78c66925493bf0 204 Gene3D G3DSA:3.90.70.10 51 203 2.1E-5 T 12-10-2018 AMJ96_PB00175 5ec8616c02338585eacadcb2441d75c0 313 Pfam PF02653 Branched-chain amino acid transport system / permease component 43 302 2.5E-38 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH00517 cd977a84633feec0e56c16a27499d9fd 496 Gene3D G3DSA:1.20.1720.10 13 219 1.7E-52 T 12-10-2018 AMJ96_CH00517 cd977a84633feec0e56c16a27499d9fd 496 Pfam PF07690 Major Facilitator Superfamily 17 405 1.4E-44 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH00517 cd977a84633feec0e56c16a27499d9fd 496 SUPERFAMILY SSF103473 10 483 9.94E-66 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH00517 cd977a84633feec0e56c16a27499d9fd 496 PRINTS PR01036 Tetracycline resistance protein TetB signature 16 40 1.3E-11 T 12-10-2018 AMJ96_CH00517 cd977a84633feec0e56c16a27499d9fd 496 PRINTS PR01036 Tetracycline resistance protein TetB signature 136 160 1.3E-11 T 12-10-2018 AMJ96_CH00517 cd977a84633feec0e56c16a27499d9fd 496 PRINTS PR01036 Tetracycline resistance protein TetB signature 201 219 1.3E-11 T 12-10-2018 AMJ96_CH00517 cd977a84633feec0e56c16a27499d9fd 496 PRINTS PR01036 Tetracycline resistance protein TetB signature 395 414 1.3E-11 T 12-10-2018 AMJ96_CH00517 cd977a84633feec0e56c16a27499d9fd 496 PRINTS PR01036 Tetracycline resistance protein TetB signature 106 126 1.3E-11 T 12-10-2018 AMJ96_CH00517 cd977a84633feec0e56c16a27499d9fd 496 Gene3D G3DSA:1.20.1250.20 259 486 7.0E-15 T 12-10-2018 AMJ96_CH03934 8b5526690f40cc6577524b5563e6bdbd 493 Gene3D G3DSA:3.40.50.720 3 284 1.7E-105 T 12-10-2018 AMJ96_CH03934 8b5526690f40cc6577524b5563e6bdbd 493 SUPERFAMILY SSF51735 5 284 3.27E-94 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03934 8b5526690f40cc6577524b5563e6bdbd 493 PRINTS PR00084 Mannitol dehydrogenase signature 182 195 2.9E-21 T 12-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMJ96_CH03934 8b5526690f40cc6577524b5563e6bdbd 493 PRINTS PR00084 Mannitol dehydrogenase signature 31 41 2.9E-21 T 12-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMJ96_CH03934 8b5526690f40cc6577524b5563e6bdbd 493 PRINTS PR00084 Mannitol dehydrogenase signature 221 234 2.9E-21 T 12-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMJ96_CH03934 8b5526690f40cc6577524b5563e6bdbd 493 PRINTS PR00084 Mannitol dehydrogenase signature 251 266 2.9E-21 T 12-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMJ96_CH03934 8b5526690f40cc6577524b5563e6bdbd 493 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 220 457 8.6E-80 T 12-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 AMJ96_CH03934 8b5526690f40cc6577524b5563e6bdbd 493 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 221 233 - T 12-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AMJ96_CH03934 8b5526690f40cc6577524b5563e6bdbd 493 Gene3D G3DSA:1.10.1040.10 285 489 3.4E-55 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AMJ96_CH03934 8b5526690f40cc6577524b5563e6bdbd 493 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 30 191 2.5E-42 T 12-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 AMJ96_CH03934 8b5526690f40cc6577524b5563e6bdbd 493 SUPERFAMILY SSF48179 286 488 4.08E-54 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_CH01922 d8c3118b66ee87b3b985a99234119b62 103 PIRSF PIRSF002599 3 92 1.6E-13 T 12-10-2018 IPR012156 Cold shock, CspA GO:0003676 AMJ96_CH01922 d8c3118b66ee87b3b985a99234119b62 103 Pfam PF06961 Protein of unknown function (DUF1294) 17 71 1.2E-23 T 12-10-2018 IPR010718 Protein of unknown function DUF1294 AMJ96_CH04029 82162087e4eb305cba0756dc3f6a01ea 307 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 18 274 1.2E-26 T 12-10-2018 IPR017039 Virulence factor BrkB AMJ96_CH04029 82162087e4eb305cba0756dc3f6a01ea 307 PIRSF PIRSF035875 1 283 2.0E-67 T 12-10-2018 IPR017039 Virulence factor BrkB AMJ96_CH04029 82162087e4eb305cba0756dc3f6a01ea 307 Pfam PF03631 Virulence factor BrkB 21 273 9.6E-48 T 12-10-2018 IPR017039 Virulence factor BrkB AMJ96_CH03669 98158ec237e0a494af7398a68d179ddc 220 SUPERFAMILY SSF56524 31 219 1.31E-61 T 12-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 AMJ96_CH03669 98158ec237e0a494af7398a68d179ddc 220 Pfam PF00174 Oxidoreductase molybdopterin binding domain 56 200 1.1E-35 T 12-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AMJ96_CH03669 98158ec237e0a494af7398a68d179ddc 220 Gene3D G3DSA:3.90.420.10 46 220 1.6E-48 T 12-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 AMJ96_CH03577 de3f5438e2cf6e3a9b3ba5445abf6061 245 Gene3D G3DSA:3.60.21.10 14 244 2.0E-50 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like AMJ96_CH03577 de3f5438e2cf6e3a9b3ba5445abf6061 245 Pfam PF00149 Calcineurin-like phosphoesterase 18 209 1.3E-12 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMJ96_CH03577 de3f5438e2cf6e3a9b3ba5445abf6061 245 SUPERFAMILY SSF56300 16 235 1.16E-39 T 12-10-2018 AMJ96_PB00133 61077f5509dc3befeaf942ee38e8982f 388 Pfam PF13407 Periplasmic binding protein domain 91 288 3.8E-37 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_PB00133 61077f5509dc3befeaf942ee38e8982f 388 SUPERFAMILY SSF53822 62 335 2.9E-43 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PB00133 61077f5509dc3befeaf942ee38e8982f 388 Gene3D G3DSA:3.40.50.2300 99 324 6.3E-38 T 12-10-2018 AMJ96_PB00133 61077f5509dc3befeaf942ee38e8982f 388 Gene3D G3DSA:3.40.50.2300 170 307 6.3E-38 T 12-10-2018 AMJ96_PB00254 3f41d21c7176223dfa96d6436120a9cb 388 SUPERFAMILY SSF49879 15 94 3.84E-6 T 12-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 AMJ96_PB00254 3f41d21c7176223dfa96d6436120a9cb 388 Gene3D G3DSA:2.60.200.20 11 108 1.6E-6 T 12-10-2018 AMJ96_PB00254 3f41d21c7176223dfa96d6436120a9cb 388 Pfam PF00498 FHA domain 16 77 1.3E-4 T 12-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMJ96_PB00291 4745d58b1b6ade91d06be8a26d37bece 84 Pfam PF13577 SnoaL-like domain 8 83 6.1E-10 T 12-10-2018 IPR037401 SnoaL-like domain AMJ96_PB00291 4745d58b1b6ade91d06be8a26d37bece 84 SUPERFAMILY SSF54427 8 81 8.78E-20 T 12-10-2018 IPR032710 NTF2-like domain superfamily AMJ96_PB00291 4745d58b1b6ade91d06be8a26d37bece 84 Gene3D G3DSA:3.10.450.50 9 84 1.4E-18 T 12-10-2018 AMJ96_CH03164 14e0efc1979109b7f522e201cc56da8a 150 Pfam PF07886 BA14K-like protein 120 147 5.4E-12 T 12-10-2018 IPR012413 BA14k family GO:0009405 AMJ96_CH02830 b22b970c027ab258adf56b3d10d74be7 133 Gene3D G3DSA:3.40.50.12740 2 132 8.4E-40 T 12-10-2018 AMJ96_CH02830 b22b970c027ab258adf56b3d10d74be7 133 Pfam PF00072 Response regulator receiver domain 4 116 2.3E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02830 b22b970c027ab258adf56b3d10d74be7 133 SMART SM00448 2 116 4.0E-37 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH02830 b22b970c027ab258adf56b3d10d74be7 133 SUPERFAMILY SSF52172 1 123 1.71E-38 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH02272 1cfd8ed67a62ab5c85d74dee873018ab 145 PIRSF PIRSF032025 1 145 5.4E-74 T 12-10-2018 IPR008320 Uncharacterised conserved protein UCP032025 AMJ96_CH02272 1cfd8ed67a62ab5c85d74dee873018ab 145 Pfam PF07370 Protein of unknown function (DUF1489) 5 145 2.0E-55 T 12-10-2018 IPR008320 Uncharacterised conserved protein UCP032025 AMJ96_CH01215 73e2318890de857cb2bae2156ba40347 157 SMART SM00347 39 137 1.9E-22 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH01215 73e2318890de857cb2bae2156ba40347 157 Pfam PF01047 MarR family 46 104 6.5E-15 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH01215 73e2318890de857cb2bae2156ba40347 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 63 79 2.0E-5 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH01215 73e2318890de857cb2bae2156ba40347 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 99 115 2.0E-5 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH01215 73e2318890de857cb2bae2156ba40347 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 80 95 2.0E-5 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH01215 73e2318890de857cb2bae2156ba40347 157 SUPERFAMILY SSF46785 17 152 9.64E-35 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01215 73e2318890de857cb2bae2156ba40347 157 Gene3D G3DSA:1.10.10.10 11 154 6.8E-37 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PA00160 7a6a67d72d9c8d2f514e2e24a1881f9d 153 SUPERFAMILY SSF102546 1 146 3.79E-42 T 12-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AMJ96_PA00160 7a6a67d72d9c8d2f514e2e24a1881f9d 153 Pfam PF05025 RbsD / FucU transport protein family 4 146 5.6E-32 T 12-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AMJ96_PA00160 7a6a67d72d9c8d2f514e2e24a1881f9d 153 Gene3D G3DSA:3.40.1650.10 1 148 1.0E-48 T 12-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AMJ96_CH01647 206348b82a8395b36ed7ee073c1f318e 666 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 67 123 4.7E-25 T 12-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01647 206348b82a8395b36ed7ee073c1f318e 666 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 268 294 8.6E-48 T 12-10-2018 AMJ96_CH01647 206348b82a8395b36ed7ee073c1f318e 666 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 84 109 8.6E-48 T 12-10-2018 AMJ96_CH01647 206348b82a8395b36ed7ee073c1f318e 666 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 447 466 8.6E-48 T 12-10-2018 AMJ96_CH01647 206348b82a8395b36ed7ee073c1f318e 666 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 246 267 8.6E-48 T 12-10-2018 AMJ96_CH01647 206348b82a8395b36ed7ee073c1f318e 666 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 336 348 8.6E-48 T 12-10-2018 AMJ96_CH01647 206348b82a8395b36ed7ee073c1f318e 666 Pfam PF00361 Proton-conducting membrane transporter 135 445 7.1E-89 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01647 206348b82a8395b36ed7ee073c1f318e 666 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 3 661 3.8E-267 T 12-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01647 206348b82a8395b36ed7ee073c1f318e 666 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 286 308 2.2E-12 T 12-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AMJ96_CH01647 206348b82a8395b36ed7ee073c1f318e 666 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 86 106 2.2E-12 T 12-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AMJ96_CH01647 206348b82a8395b36ed7ee073c1f318e 666 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 446 468 2.2E-12 T 12-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AMJ96_CH03789 0bd7e7e38cdf9c91bc9c56aae00643fd 262 Pfam PF05013 N-formylglutamate amidohydrolase 18 223 6.9E-38 T 12-10-2018 IPR007709 N-formylglutamate amidohydrolase AMJ96_CH03789 0bd7e7e38cdf9c91bc9c56aae00643fd 262 PIRSF PIRSF029730 1 255 6.7E-101 T 12-10-2018 IPR011227 Uncharacterised conserved protein UCP029730 AMJ96_CH03789 0bd7e7e38cdf9c91bc9c56aae00643fd 262 SUPERFAMILY SSF53187 2 244 4.39E-70 T 12-10-2018 AMJ96_CH03789 0bd7e7e38cdf9c91bc9c56aae00643fd 262 Gene3D G3DSA:3.40.630.40 7 246 9.6E-72 T 12-10-2018 AMJ96_PC00385 8a83e78de19905df1df82c6bb35d2914 295 Pfam PF01738 Dienelactone hydrolase family 85 293 3.4E-52 T 12-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 AMJ96_PC00385 8a83e78de19905df1df82c6bb35d2914 295 Gene3D G3DSA:3.40.50.1820 58 294 3.0E-73 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PC00385 8a83e78de19905df1df82c6bb35d2914 295 SUPERFAMILY SSF53474 70 294 5.36E-49 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02028 dbf679d7a8f77650b52207463a88d75f 429 SUPERFAMILY SSF161098 220 416 1.02E-35 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02028 dbf679d7a8f77650b52207463a88d75f 429 Gene3D G3DSA:1.10.3720.10 215 428 1.5E-43 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02028 dbf679d7a8f77650b52207463a88d75f 429 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 238 425 4.2E-23 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02028 dbf679d7a8f77650b52207463a88d75f 429 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 221 316 7.5E-15 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_CH01439 af3f26c999cbf29343f35d78897938d7 331 Gene3D G3DSA:3.20.20.100 12 330 1.4E-73 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH01439 af3f26c999cbf29343f35d78897938d7 331 SUPERFAMILY SSF51430 10 328 7.07E-69 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH01439 af3f26c999cbf29343f35d78897938d7 331 Pfam PF00248 Aldo/keto reductase family 22 327 5.2E-56 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_CH02766 9889e06730315f55b43fa9cf5d56046f 498 SMART SM00710 216 237 130.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH02766 9889e06730315f55b43fa9cf5d56046f 498 SMART SM00710 238 264 1200.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH02766 9889e06730315f55b43fa9cf5d56046f 498 SMART SM00710 163 188 360.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH02766 9889e06730315f55b43fa9cf5d56046f 498 SMART SM00710 140 162 0.3 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH02766 9889e06730315f55b43fa9cf5d56046f 498 SMART SM00710 90 112 830.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH02766 9889e06730315f55b43fa9cf5d56046f 498 SMART SM00710 298 320 2500.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH02766 9889e06730315f55b43fa9cf5d56046f 498 SMART SM00710 268 289 140.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH02766 9889e06730315f55b43fa9cf5d56046f 498 SMART SM00710 113 139 9800.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat AMJ96_CH02766 9889e06730315f55b43fa9cf5d56046f 498 Pfam PF13229 Right handed beta helix region 156 331 1.3E-19 T 12-10-2018 IPR039448 Right handed beta helix domain AMJ96_CH02766 9889e06730315f55b43fa9cf5d56046f 498 SUPERFAMILY SSF51126 21 357 1.87E-46 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor AMJ96_CH02766 9889e06730315f55b43fa9cf5d56046f 498 Gene3D G3DSA:2.160.20.10 3 393 3.6E-36 T 12-10-2018 IPR012334 Pectin lyase fold AMJ96_CH03683 810447090447f24c5d5a90aa87a7972f 334 Pfam PF02653 Branched-chain amino acid transport system / permease component 45 311 2.4E-36 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH02801 4ad969e3f5a7251f79e0f9205ff7503a 344 Pfam PF04116 Fatty acid hydroxylase superfamily 178 307 6.4E-19 T 12-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 AMJ96_CH02873 cd1a414ebfa129df9860ab2bbfc0ec25 401 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 211 3.2E-54 T 12-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AMJ96_CH02873 cd1a414ebfa129df9860ab2bbfc0ec25 401 SUPERFAMILY SSF52540 3 327 5.4E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02873 cd1a414ebfa129df9860ab2bbfc0ec25 401 SMART SM00833 259 375 2.1E-47 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AMJ96_CH02873 cd1a414ebfa129df9860ab2bbfc0ec25 401 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 259 375 9.4E-27 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AMJ96_CH02873 cd1a414ebfa129df9860ab2bbfc0ec25 401 Gene3D G3DSA:3.40.50.300 2 230 4.7E-71 T 12-10-2018 AMJ96_CH01067 e22b8e062163c7b7f66c01f9f747e010 98 Gene3D G3DSA:1.10.10.60 6 45 4.1E-5 T 12-10-2018 AMJ96_CH01067 e22b8e062163c7b7f66c01f9f747e010 98 Pfam PF07750 GcrA cell cycle regulator 6 45 3.6E-6 T 12-10-2018 IPR011681 GcrA cell cycle regulator AMJ96_PC00431 44a8481010f4ecff1fafaefb050dbd39 416 SUPERFAMILY SSF51905 31 402 9.91E-56 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00431 44a8481010f4ecff1fafaefb050dbd39 416 Pfam PF01266 FAD dependent oxidoreductase 33 379 8.0E-60 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_PC00431 44a8481010f4ecff1fafaefb050dbd39 416 TIGRFAM TIGR01373 soxB: sarcosine oxidase, beta subunit family 2 406 1.8E-218 T 12-10-2018 IPR006278 Sarcosine oxidase subunit beta GO:0008115|GO:0046653|GO:0055114 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 AMJ96_PC00431 44a8481010f4ecff1fafaefb050dbd39 416 Gene3D G3DSA:3.50.50.60 33 387 4.4E-104 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00431 44a8481010f4ecff1fafaefb050dbd39 416 SUPERFAMILY SSF54373 270 337 6.08E-5 T 12-10-2018 AMJ96_PC00431 44a8481010f4ecff1fafaefb050dbd39 416 Gene3D G3DSA:3.30.9.10 114 344 4.4E-104 T 12-10-2018 AMJ96_CH03192 c2066577586c2540f8fafcec39ffe94a 163 Gene3D G3DSA:3.10.129.10 5 155 1.5E-39 T 12-10-2018 AMJ96_CH03192 c2066577586c2540f8fafcec39ffe94a 163 Pfam PF01575 MaoC like domain 24 121 2.5E-13 T 12-10-2018 IPR002539 MaoC-like dehydratase domain AMJ96_CH03192 c2066577586c2540f8fafcec39ffe94a 163 SUPERFAMILY SSF54637 5 151 2.35E-34 T 12-10-2018 IPR029069 HotDog domain superfamily AMJ96_CH02289 4e3eb9dc292502af5a57adf436c0cb27 155 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 144 27.745 T 12-10-2018 IPR003791 Protein of unknown function UPF0178 AMJ96_CH02289 4e3eb9dc292502af5a57adf436c0cb27 155 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 14 142 1.5E-43 T 12-10-2018 IPR003791 Protein of unknown function UPF0178 AMJ96_CH01746 a1056aab0f8514f0effed239abfaa9b5 315 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 7 315 56.633 T 12-10-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 AMJ96_CH01746 a1056aab0f8514f0effed239abfaa9b5 315 Gene3D G3DSA:3.90.420.10 48 315 9.5E-113 T 12-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 AMJ96_CH01746 a1056aab0f8514f0effed239abfaa9b5 315 Pfam PF00174 Oxidoreductase molybdopterin binding domain 92 248 4.9E-30 T 12-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AMJ96_CH01746 a1056aab0f8514f0effed239abfaa9b5 315 SUPERFAMILY SSF56524 59 311 1.03E-95 T 12-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 AMJ96_CH02001 4abe9815226703296a5edab108758529 106 Pfam PF04977 Septum formation initiator 23 100 1.6E-19 T 12-10-2018 IPR007060 Septum formation initiator FtsL/DivIC AMJ96_CH02106 b0200733219e9772d517d453512126c8 282 SUPERFAMILY SSF161098 13 281 4.77E-68 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02106 b0200733219e9772d517d453512126c8 282 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 274 2.8E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02106 b0200733219e9772d517d453512126c8 282 Gene3D G3DSA:1.10.3720.10 4 273 3.4E-60 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03097 a1da423e635731a22937beba956fac12 208 Gene3D G3DSA:2.40.160.20 38 208 3.4E-18 T 12-10-2018 AMJ96_CH03097 a1da423e635731a22937beba956fac12 208 SUPERFAMILY SSF56925 36 208 3.66E-31 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel AMJ96_CH03097 a1da423e635731a22937beba956fac12 208 Pfam PF13505 Outer membrane protein beta-barrel domain 24 208 1.9E-23 T 12-10-2018 IPR027385 Outer membrane protein beta-barrel AMJ96_CH02120 ad640f2e35408b88bf99546ee2e5179e 281 SMART SM00382 35 242 1.4E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH02120 ad640f2e35408b88bf99546ee2e5179e 281 Pfam PF00005 ABC transporter 28 185 1.9E-21 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02120 ad640f2e35408b88bf99546ee2e5179e 281 SUPERFAMILY SSF52540 8 247 4.99E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02120 ad640f2e35408b88bf99546ee2e5179e 281 Gene3D G3DSA:3.40.50.300 7 281 4.3E-73 T 12-10-2018 AMJ96_CH01669 7f04d566ce4646bab4665ce90b58a792 150 Pfam PF06170 Protein of unknown function (DUF983) 42 126 2.3E-29 T 12-10-2018 IPR009325 Protein of unknown function DUF983 AMJ96_CH01849 64902574acb946eddd53587999da2d31 67 Pfam PF05532 CsbD-like 4 54 6.8E-23 T 12-10-2018 IPR008462 CsbD-like domain AMJ96_CH01849 64902574acb946eddd53587999da2d31 67 SUPERFAMILY SSF69047 1 66 2.75E-26 T 12-10-2018 IPR036629 YjbJ superfamily AMJ96_CH01849 64902574acb946eddd53587999da2d31 67 Gene3D G3DSA:1.10.1470.10 1 67 3.6E-30 T 12-10-2018 IPR036629 YjbJ superfamily AMJ96_CH01849 64902574acb946eddd53587999da2d31 67 PIRSF PIRSF039008 1 66 3.5E-31 T 12-10-2018 IPR026042 Stress response protein YjbJ AMJ96_CH01538 a85a14b95a8efd706f03a31c469a2432 353 SUPERFAMILY SSF55073 150 335 2.2E-38 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH01538 a85a14b95a8efd706f03a31c469a2432 353 Gene3D G3DSA:3.30.70.1230 152 345 5.0E-30 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH01538 a85a14b95a8efd706f03a31c469a2432 353 SMART SM00044 128 318 0.0034 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH01538 a85a14b95a8efd706f03a31c469a2432 353 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 160 331 5.8E-18 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH01259 751ddf9bfe1586c14f3ca942b9d9a531 90 Pfam PF02583 Metal-sensitive transcriptional repressor 7 86 6.5E-22 T 12-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 AMJ96_CH01259 751ddf9bfe1586c14f3ca942b9d9a531 90 Gene3D G3DSA:1.20.58.1000 1 90 1.6E-27 T 12-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily AMJ96_CH00836 d960e7ca29c7b51f8d68a809ca4c6bac 249 Pfam PF03734 L,D-transpeptidase catalytic domain 117 248 2.6E-20 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMJ96_CH00836 d960e7ca29c7b51f8d68a809ca4c6bac 249 Gene3D G3DSA:2.40.440.10 59 249 9.8E-51 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH00836 d960e7ca29c7b51f8d68a809ca4c6bac 249 SUPERFAMILY SSF141523 111 248 1.96E-35 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH01500 5f27aaa754ced2fdd1f161c41ee81a4c 275 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 19 274 51.305 T 12-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 AMJ96_CH01500 5f27aaa754ced2fdd1f161c41ee81a4c 275 SUPERFAMILY SSF53335 16 274 4.58E-74 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH01500 5f27aaa754ced2fdd1f161c41ee81a4c 275 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 20 275 2.6E-68 T 12-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 AMJ96_CH01500 5f27aaa754ced2fdd1f161c41ee81a4c 275 SMART SM00650 35 211 5.3E-67 T 12-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 AMJ96_CH01500 5f27aaa754ced2fdd1f161c41ee81a4c 275 Gene3D G3DSA:3.40.50.150 1 214 1.6E-67 T 12-10-2018 AMJ96_CH01500 5f27aaa754ced2fdd1f161c41ee81a4c 275 Gene3D G3DSA:1.10.8.100 215 275 4.0E-22 T 12-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 AMJ96_CH01500 5f27aaa754ced2fdd1f161c41ee81a4c 275 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 51 79 - T 12-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 AMJ96_CH01500 5f27aaa754ced2fdd1f161c41ee81a4c 275 Pfam PF00398 Ribosomal RNA adenine dimethylase 20 274 1.6E-45 T 12-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm AMJ96_PD00009 173bd7385d84f773fe0741a2a69d3022 86 Gene3D G3DSA:2.10.260.10 3 81 1.7E-26 T 12-10-2018 AMJ96_PD00009 173bd7385d84f773fe0741a2a69d3022 86 SMART SM00966 8 48 1.0E-4 T 12-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 AMJ96_PD00009 173bd7385d84f773fe0741a2a69d3022 86 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 8 45 4.1E-10 T 12-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 AMJ96_PD00009 173bd7385d84f773fe0741a2a69d3022 86 SUPERFAMILY SSF89447 5 72 1.05E-11 T 12-10-2018 IPR037914 SpoVT-AbrB domain superfamily AMJ96_CH01818 8e80c28abd8805ab0ed5d8dd8832989b 662 SUPERFAMILY SSF55816 384 619 1.27E-45 T 12-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH01818 8e80c28abd8805ab0ed5d8dd8832989b 662 Pfam PF00149 Calcineurin-like phosphoesterase 43 284 3.7E-9 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMJ96_CH01818 8e80c28abd8805ab0ed5d8dd8832989b 662 Pfam PF02872 5'-nucleotidase, C-terminal domain 385 578 2.7E-23 T 12-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH01818 8e80c28abd8805ab0ed5d8dd8832989b 662 ProSitePatterns PS00786 5'-nucleotidase signature 2. 128 139 - T 12-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH01818 8e80c28abd8805ab0ed5d8dd8832989b 662 SUPERFAMILY SSF56300 36 381 2.4E-81 T 12-10-2018 AMJ96_CH01818 8e80c28abd8805ab0ed5d8dd8832989b 662 Gene3D G3DSA:3.60.21.10 33 383 1.1E-124 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like AMJ96_CH01818 8e80c28abd8805ab0ed5d8dd8832989b 662 Gene3D G3DSA:3.90.780.10 417 618 2.7E-55 T 12-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH01818 8e80c28abd8805ab0ed5d8dd8832989b 662 PRINTS PR01607 Apyrase family signature 555 574 2.2E-27 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH01818 8e80c28abd8805ab0ed5d8dd8832989b 662 PRINTS PR01607 Apyrase family signature 309 329 2.2E-27 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH01818 8e80c28abd8805ab0ed5d8dd8832989b 662 PRINTS PR01607 Apyrase family signature 240 257 2.2E-27 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH01818 8e80c28abd8805ab0ed5d8dd8832989b 662 PRINTS PR01607 Apyrase family signature 268 291 2.2E-27 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH01818 8e80c28abd8805ab0ed5d8dd8832989b 662 PRINTS PR01607 Apyrase family signature 40 58 2.2E-27 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH01818 8e80c28abd8805ab0ed5d8dd8832989b 662 PRINTS PR01607 Apyrase family signature 455 478 2.2E-27 T 12-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AMJ96_CH04332 fbe42bc07a160c2c0d049def742bed46 466 SUPERFAMILY SSF51261 309 453 1.88E-19 T 12-10-2018 IPR011055 Duplicated hybrid motif AMJ96_CH04332 fbe42bc07a160c2c0d049def742bed46 466 Pfam PF01551 Peptidase family M23 349 449 2.7E-18 T 12-10-2018 IPR016047 Peptidase M23 AMJ96_CH04332 fbe42bc07a160c2c0d049def742bed46 466 Gene3D G3DSA:2.70.70.10 310 455 3.6E-23 T 12-10-2018 IPR011055 Duplicated hybrid motif AMJ96_PA00245 777622154f296bece03a8b65c5921946 348 Pfam PF02653 Branched-chain amino acid transport system / permease component 59 329 6.2E-51 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_PA00166 4eed72165f7ebb5d0f56b790330477fb 97 PRINTS PR01438 Universal stress protein signature 75 97 1.1E-5 T 12-10-2018 IPR006015 Universal stress protein A AMJ96_PA00166 4eed72165f7ebb5d0f56b790330477fb 97 PRINTS PR01438 Universal stress protein signature 57 69 1.1E-5 T 12-10-2018 IPR006015 Universal stress protein A AMJ96_PA00166 4eed72165f7ebb5d0f56b790330477fb 97 Pfam PF00582 Universal stress protein family 34 95 1.3E-8 T 12-10-2018 IPR006016 UspA AMJ96_PA00166 4eed72165f7ebb5d0f56b790330477fb 97 Gene3D G3DSA:3.40.50.620 6 97 1.8E-12 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AMJ96_PA00166 4eed72165f7ebb5d0f56b790330477fb 97 SUPERFAMILY SSF52402 19 96 4.94E-14 T 12-10-2018 AMJ96_CH00776 d2d48c4757972d8aadbd9946937fe481 334 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 333 1.7E-42 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00776 d2d48c4757972d8aadbd9946937fe481 334 SUPERFAMILY SSF161098 91 319 9.81E-18 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01318 e499a1b2dcd6ed2ec457ca1ce2ed767e 310 SUPERFAMILY SSF50475 175 292 5.31E-11 T 12-10-2018 AMJ96_CH01318 e499a1b2dcd6ed2ec457ca1ce2ed767e 310 Gene3D G3DSA:2.30.110.10 175 297 3.7E-13 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMJ96_CH01318 e499a1b2dcd6ed2ec457ca1ce2ed767e 310 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 176 270 2.1E-14 T 12-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMJ96_CH01880 b7c7935df94e1c86650fb14b163db50d 129 Pfam PF13564 DoxX-like family 19 109 9.5E-14 T 12-10-2018 IPR032808 DoxX family AMJ96_CH02125 64f86bbf35c71913590f34a479eddd10 419 Pfam PF13416 Bacterial extracellular solute-binding protein 43 354 7.6E-25 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH02125 64f86bbf35c71913590f34a479eddd10 419 Gene3D G3DSA:3.40.190.10 23 414 3.3E-55 T 12-10-2018 AMJ96_CH02125 64f86bbf35c71913590f34a479eddd10 419 SUPERFAMILY SSF53850 26 415 9.78E-52 T 12-10-2018 AMJ96_CH04011 944dfaa3b0be99f8dbe6a89572b44e3c 293 SUPERFAMILY SSF109998 26 164 8.63E-16 T 12-10-2018 IPR027304 Trigger factor/SurA domain superfamily AMJ96_CH04011 944dfaa3b0be99f8dbe6a89572b44e3c 293 Pfam PF13616 PPIC-type PPIASE domain 133 226 5.1E-26 T 12-10-2018 AMJ96_CH04011 944dfaa3b0be99f8dbe6a89572b44e3c 293 SUPERFAMILY SSF54534 118 224 1.11E-33 T 12-10-2018 AMJ96_CH04011 944dfaa3b0be99f8dbe6a89572b44e3c 293 Gene3D G3DSA:3.10.50.40 132 229 1.6E-39 T 12-10-2018 AMJ96_PD00559 a1ad53ccfe0bc79253270e95b560883e 179 SUPERFAMILY SSF46689 2 54 2.1E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PD00559 a1ad53ccfe0bc79253270e95b560883e 179 SUPERFAMILY SSF48498 64 175 4.45E-19 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_PD00559 a1ad53ccfe0bc79253270e95b560883e 179 Pfam PF00440 Bacterial regulatory proteins, tetR family 2 42 4.4E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PD00559 a1ad53ccfe0bc79253270e95b560883e 179 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 105 171 2.0E-6 T 12-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal AMJ96_PD00559 a1ad53ccfe0bc79253270e95b560883e 179 Gene3D G3DSA:1.10.357.10 1 178 7.0E-30 T 12-10-2018 AMJ96_CH01925 fb0e4c493ced0c7b0eb23a750a1b550f 157 Gene3D G3DSA:3.40.630.30 6 156 1.6E-33 T 12-10-2018 AMJ96_CH01925 fb0e4c493ced0c7b0eb23a750a1b550f 157 Pfam PF13508 Acetyltransferase (GNAT) domain 58 147 2.0E-11 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH01925 fb0e4c493ced0c7b0eb23a750a1b550f 157 SUPERFAMILY SSF55729 6 150 5.32E-26 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_PC00302 97c7b3c85bc35061ae7b5036f7bd4c15 270 Pfam PF00455 DeoR C terminal sensor domain 79 234 3.4E-42 T 12-10-2018 IPR014036 DeoR C-terminal sensor domain AMJ96_PC00302 97c7b3c85bc35061ae7b5036f7bd4c15 270 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 12-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AMJ96_PC00302 97c7b3c85bc35061ae7b5036f7bd4c15 270 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 5.1E-14 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMJ96_PC00302 97c7b3c85bc35061ae7b5036f7bd4c15 270 SMART SM01134 77 236 2.1E-49 T 12-10-2018 AMJ96_PC00302 97c7b3c85bc35061ae7b5036f7bd4c15 270 SUPERFAMILY SSF100950 79 236 3.77E-27 T 12-10-2018 IPR037171 NagB/RpiA transferase-like AMJ96_PC00302 97c7b3c85bc35061ae7b5036f7bd4c15 270 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 4.2E-5 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMJ96_PC00302 97c7b3c85bc35061ae7b5036f7bd4c15 270 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 4.2E-5 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMJ96_PC00302 97c7b3c85bc35061ae7b5036f7bd4c15 270 SMART SM00420 6 58 2.6E-15 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AMJ96_PC00302 97c7b3c85bc35061ae7b5036f7bd4c15 270 SUPERFAMILY SSF46785 5 60 3.63E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03065 21bef0ac1a17475463bcfa36a3aa4a43 333 Gene3D G3DSA:2.40.50.940 252 326 8.2E-8 T 12-10-2018 AMJ96_CH03065 21bef0ac1a17475463bcfa36a3aa4a43 333 Gene3D G3DSA:2.40.50.140 262 317 8.2E-8 T 12-10-2018 AMJ96_CH03065 21bef0ac1a17475463bcfa36a3aa4a43 333 Pfam PF08402 TOBE domain 255 325 1.6E-8 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 AMJ96_CH03065 21bef0ac1a17475463bcfa36a3aa4a43 333 SMART SM00382 28 211 3.2E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03065 21bef0ac1a17475463bcfa36a3aa4a43 333 Gene3D G3DSA:2.40.50.940 222 247 9.4E-13 T 12-10-2018 AMJ96_CH03065 21bef0ac1a17475463bcfa36a3aa4a43 333 SUPERFAMILY SSF52540 4 242 6.82E-83 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03065 21bef0ac1a17475463bcfa36a3aa4a43 333 SUPERFAMILY SSF50331 236 332 3.64E-22 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal AMJ96_CH03065 21bef0ac1a17475463bcfa36a3aa4a43 333 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_CH03065 21bef0ac1a17475463bcfa36a3aa4a43 333 Gene3D G3DSA:3.40.50.300 3 221 6.0E-62 T 12-10-2018 AMJ96_CH03065 21bef0ac1a17475463bcfa36a3aa4a43 333 Pfam PF00005 ABC transporter 19 161 3.1E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_CH02537 c4d100cf863fbee621ac6e3d25fefb29 132 SUPERFAMILY SSF55961 2 131 2.71E-33 T 12-10-2018 AMJ96_CH02537 c4d100cf863fbee621ac6e3d25fefb29 132 Gene3D G3DSA:3.30.530.20 3 132 1.6E-48 T 12-10-2018 IPR023393 START-like domain superfamily AMJ96_CH03315 1c0564c4ec2103c14d16f521e47f5550 136 SUPERFAMILY SSF88723 2 125 5.33E-22 T 12-10-2018 IPR029060 PIN-like domain superfamily AMJ96_CH03315 1c0564c4ec2103c14d16f521e47f5550 136 Gene3D G3DSA:3.40.50.1010 1 125 3.1E-11 T 12-10-2018 AMJ96_CH03315 1c0564c4ec2103c14d16f521e47f5550 136 Pfam PF01850 PIN domain 2 120 2.5E-14 T 12-10-2018 IPR002716 PIN domain AMJ96_CH03619 484f98d8dc0937fa748acaa56a5e5113 591 Pfam PF00361 Proton-conducting membrane transporter 111 384 1.1E-43 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03619 484f98d8dc0937fa748acaa56a5e5113 591 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 65 90 1.8E-7 T 12-10-2018 AMJ96_CH03619 484f98d8dc0937fa748acaa56a5e5113 591 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 218 244 1.8E-7 T 12-10-2018 AMJ96_CH03619 484f98d8dc0937fa748acaa56a5e5113 591 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 196 217 1.8E-7 T 12-10-2018 AMJ96_CH03619 484f98d8dc0937fa748acaa56a5e5113 591 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 279 291 1.8E-7 T 12-10-2018 AMJ96_CH03380 0820d412b7d8ce9910f15c3c4a58eb27 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 2.2E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03380 0820d412b7d8ce9910f15c3c4a58eb27 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 5.9E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03380 0820d412b7d8ce9910f15c3c4a58eb27 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 5.9E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03380 0820d412b7d8ce9910f15c3c4a58eb27 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 5.9E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH03380 0820d412b7d8ce9910f15c3c4a58eb27 299 SUPERFAMILY SSF46785 2 112 4.08E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03380 0820d412b7d8ce9910f15c3c4a58eb27 299 Gene3D G3DSA:3.40.190.10 164 262 1.2E-48 T 12-10-2018 AMJ96_CH03380 0820d412b7d8ce9910f15c3c4a58eb27 299 Gene3D G3DSA:1.10.10.10 3 89 6.4E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03380 0820d412b7d8ce9910f15c3c4a58eb27 299 Gene3D G3DSA:3.40.190.10 92 288 1.2E-48 T 12-10-2018 AMJ96_CH03380 0820d412b7d8ce9910f15c3c4a58eb27 299 SUPERFAMILY SSF53850 91 294 2.9E-37 T 12-10-2018 AMJ96_CH03380 0820d412b7d8ce9910f15c3c4a58eb27 299 Pfam PF03466 LysR substrate binding domain 89 290 1.2E-35 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH03714 a407ee848bddbd7097e683e1130cc127 333 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 4 323 3.6E-134 T 12-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 AMJ96_CH03714 a407ee848bddbd7097e683e1130cc127 333 SUPERFAMILY SSF51679 3 323 1.3E-88 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_CH03714 a407ee848bddbd7097e683e1130cc127 333 Gene3D G3DSA:3.20.20.30 1 327 5.1E-96 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_CH03714 a407ee848bddbd7097e683e1130cc127 333 Pfam PF00296 Luciferase-like monooxygenase 20 301 5.6E-36 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMJ96_CH00703 bfbfb41acdd0412a546400155a6f60d8 373 Pfam PF02119 Flagellar P-ring protein 30 371 5.3E-133 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMJ96_CH00703 bfbfb41acdd0412a546400155a6f60d8 373 PRINTS PR01010 Flagellar P-ring protein signature 195 213 1.4E-92 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMJ96_CH00703 bfbfb41acdd0412a546400155a6f60d8 373 PRINTS PR01010 Flagellar P-ring protein signature 169 187 1.4E-92 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMJ96_CH00703 bfbfb41acdd0412a546400155a6f60d8 373 PRINTS PR01010 Flagellar P-ring protein signature 45 60 1.4E-92 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMJ96_CH00703 bfbfb41acdd0412a546400155a6f60d8 373 PRINTS PR01010 Flagellar P-ring protein signature 90 109 1.4E-92 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMJ96_CH00703 bfbfb41acdd0412a546400155a6f60d8 373 PRINTS PR01010 Flagellar P-ring protein signature 112 129 1.4E-92 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMJ96_CH00703 bfbfb41acdd0412a546400155a6f60d8 373 PRINTS PR01010 Flagellar P-ring protein signature 129 147 1.4E-92 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMJ96_CH00703 bfbfb41acdd0412a546400155a6f60d8 373 PRINTS PR01010 Flagellar P-ring protein signature 65 80 1.4E-92 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMJ96_CH00703 bfbfb41acdd0412a546400155a6f60d8 373 PRINTS PR01010 Flagellar P-ring protein signature 30 45 1.4E-92 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMJ96_CH00703 bfbfb41acdd0412a546400155a6f60d8 373 PRINTS PR01010 Flagellar P-ring protein signature 261 273 1.4E-92 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMJ96_CH00703 bfbfb41acdd0412a546400155a6f60d8 373 Hamap MF_00416 Flagellar P-ring protein [flgI]. 10 373 37.524 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AMJ96_CH02665 784e0c7db7ec713a644fee79fa6357f5 551 Pfam PF13817 IS66 C-terminal element 502 539 6.7E-15 T 12-10-2018 IPR039552 Transposase IS66, C-terminal AMJ96_CH02665 784e0c7db7ec713a644fee79fa6357f5 551 Pfam PF03050 Transposase IS66 family 197 495 2.5E-86 T 12-10-2018 IPR004291 Transposase, IS66 AMJ96_CH02665 784e0c7db7ec713a644fee79fa6357f5 551 Pfam PF13007 Transposase C of IS166 homeodomain 56 132 4.3E-17 T 12-10-2018 IPR024463 Transposase TnpC, homeodomain AMJ96_CH02665 784e0c7db7ec713a644fee79fa6357f5 551 Pfam PF13005 zinc-finger binding domain of transposase IS66 137 182 2.0E-15 T 12-10-2018 IPR024474 Zinc-finger binding domain of transposase IS66 AMJ96_PB00014 a02298bf4b495ce069e177ad0b9d70cb 447 Pfam PF13281 Domain of unknown function (DUF4071) 82 423 1.4E-40 T 12-10-2018 IPR025136 Domain of unknown function DUF4071 AMJ96_PB00014 a02298bf4b495ce069e177ad0b9d70cb 447 Gene3D G3DSA:1.25.40.10 136 381 2.4E-5 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01562 b9a34fcec887c989ee446593430c31b8 177 Gene3D G3DSA:3.30.1450.10 41 130 9.6E-9 T 12-10-2018 IPR037873 BamE-like AMJ96_CH01562 b9a34fcec887c989ee446593430c31b8 177 Pfam PF04355 SmpA / OmlA family 42 116 1.6E-19 T 12-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 AMJ96_PD00033 a56395cc2ddf462e5b666a59095d2dfa 219 SUPERFAMILY SSF101473 2 208 4.05E-52 T 12-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AMJ96_PD00033 a56395cc2ddf462e5b666a59095d2dfa 219 Gene3D G3DSA:1.25.40.340 1 211 1.2E-58 T 12-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AMJ96_PD00033 a56395cc2ddf462e5b666a59095d2dfa 219 Pfam PF02734 DAK2 domain 31 206 1.3E-50 T 12-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AMJ96_PD00033 a56395cc2ddf462e5b666a59095d2dfa 219 SMART SM01120 31 207 2.0E-67 T 12-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AMJ96_PD00033 a56395cc2ddf462e5b666a59095d2dfa 219 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 14 206 5.0E-56 T 12-10-2018 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 KEGG: 00561+2.7.1.121 AMJ96_CH02823 76f45bc50cd45b498e00d1c0f3ea8318 424 Pfam PF01547 Bacterial extracellular solute-binding protein 55 339 8.1E-30 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH02823 76f45bc50cd45b498e00d1c0f3ea8318 424 SUPERFAMILY SSF53850 38 422 3.78E-60 T 12-10-2018 AMJ96_CH02823 76f45bc50cd45b498e00d1c0f3ea8318 424 Gene3D G3DSA:3.40.190.10 58 367 3.0E-109 T 12-10-2018 AMJ96_CH02823 76f45bc50cd45b498e00d1c0f3ea8318 424 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 10 39 3.3E-6 T 12-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMJ96_CH02823 76f45bc50cd45b498e00d1c0f3ea8318 424 Gene3D G3DSA:3.40.190.10 153 404 3.0E-109 T 12-10-2018 AMJ96_CH02823 76f45bc50cd45b498e00d1c0f3ea8318 424 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 11 30 1.3E-6 T 12-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AMJ96_PA00227 b664781dbb9106cbaa477924272af819 283 Gene3D G3DSA:1.10.3720.10 80 277 5.0E-30 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00227 b664781dbb9106cbaa477924272af819 283 SUPERFAMILY SSF161098 82 263 3.79E-35 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00227 b664781dbb9106cbaa477924272af819 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 275 5.5E-28 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00027 f93ea3af7c7cc8ae5a7d09677e450fd8 1064 SUPERFAMILY SSF52540 362 759 2.12E-36 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00027 f93ea3af7c7cc8ae5a7d09677e450fd8 1064 Pfam PF12705 PD-(D/E)XK nuclease superfamily 782 1014 6.2E-22 T 12-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type AMJ96_CH00027 f93ea3af7c7cc8ae5a7d09677e450fd8 1064 TIGRFAM TIGR02786 addB_alphas: double-strand break repair protein AddB 8 1053 0.0 T 12-10-2018 IPR014153 Double-strand break repair protein AddB AMJ96_CH02806 8c335c586d869332a69dd6fde0a27b3a 548 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 118 280 5.3E-38 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH02806 8c335c586d869332a69dd6fde0a27b3a 548 SMART SM00267 109 281 4.1E-57 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH02806 8c335c586d869332a69dd6fde0a27b3a 548 Gene3D G3DSA:3.20.20.450 294 539 1.8E-91 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH02806 8c335c586d869332a69dd6fde0a27b3a 548 SUPERFAMILY SSF55073 125 283 5.26E-45 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02806 8c335c586d869332a69dd6fde0a27b3a 548 Pfam PF00563 EAL domain 297 526 1.7E-71 T 12-10-2018 IPR001633 EAL domain AMJ96_CH02806 8c335c586d869332a69dd6fde0a27b3a 548 SMART SM00052 291 531 1.4E-112 T 12-10-2018 IPR001633 EAL domain AMJ96_CH02806 8c335c586d869332a69dd6fde0a27b3a 548 SUPERFAMILY SSF141868 297 537 1.44E-85 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_CH02806 8c335c586d869332a69dd6fde0a27b3a 548 Pfam PF00990 Diguanylate cyclase, GGDEF domain 120 276 6.2E-45 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH02806 8c335c586d869332a69dd6fde0a27b3a 548 Gene3D G3DSA:3.30.70.270 114 293 5.8E-54 T 12-10-2018 AMJ96_CH01872 2f87d5000bca4552a6e391925c2f3898 234 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 25 184 1.0E-29 T 12-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 AMJ96_CH01872 2f87d5000bca4552a6e391925c2f3898 234 Gene3D G3DSA:1.10.10.10 17 92 6.5E-8 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01872 2f87d5000bca4552a6e391925c2f3898 234 Gene3D G3DSA:1.10.10.10 93 188 1.1E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH01872 2f87d5000bca4552a6e391925c2f3898 234 SUPERFAMILY SSF46785 98 171 1.36E-25 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01872 2f87d5000bca4552a6e391925c2f3898 234 SUPERFAMILY SSF46785 21 92 1.22E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01872 2f87d5000bca4552a6e391925c2f3898 234 Pfam PF04079 Segregation and condensation complex subunit ScpB 26 179 9.3E-47 T 12-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 AMJ96_CH00475 1bf8b38a5f7139f42c3f55ab9b32c3a6 510 SUPERFAMILY SSF46894 2 100 7.37E-17 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH00475 1bf8b38a5f7139f42c3f55ab9b32c3a6 510 SUPERFAMILY SSF48452 328 476 9.1E-18 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH00475 1bf8b38a5f7139f42c3f55ab9b32c3a6 510 SMART SM00862 24 99 7.1E-17 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH00475 1bf8b38a5f7139f42c3f55ab9b32c3a6 510 Pfam PF00486 Transcriptional regulatory protein, C terminal 25 99 1.1E-13 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AMJ96_CH00475 1bf8b38a5f7139f42c3f55ab9b32c3a6 510 Gene3D G3DSA:1.10.10.10 3 115 5.5E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00475 1bf8b38a5f7139f42c3f55ab9b32c3a6 510 Gene3D G3DSA:1.25.40.10 262 488 1.7E-22 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02393 21ea96b7932e911901f2585995a6b374 146 SUPERFAMILY SSF109635 13 104 5.23E-34 T 12-10-2018 IPR037187 DksA, N-terminal domain superfamily AMJ96_CH02393 21ea96b7932e911901f2585995a6b374 146 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 26 135 3.5E-46 T 12-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 AMJ96_CH02393 21ea96b7932e911901f2585995a6b374 146 Gene3D G3DSA:1.20.120.910 11 146 9.6E-39 T 12-10-2018 AMJ96_CH02393 21ea96b7932e911901f2585995a6b374 146 SUPERFAMILY SSF57716 105 144 2.71E-9 T 12-10-2018 AMJ96_CH02393 21ea96b7932e911901f2585995a6b374 146 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 103 138 3.3E-12 T 12-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 AMJ96_CH02393 21ea96b7932e911901f2585995a6b374 146 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 108 132 - T 12-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site AMJ96_CH02393 21ea96b7932e911901f2585995a6b374 146 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 22 144 29.488 T 12-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 AMJ96_CH00828 b73b461e7e3f6a60b84f4d883e06ccc5 173 Gene3D G3DSA:3.90.79.10 24 159 1.3E-22 T 12-10-2018 AMJ96_CH00828 b73b461e7e3f6a60b84f4d883e06ccc5 173 SUPERFAMILY SSF55811 16 158 1.49E-20 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_CH00828 b73b461e7e3f6a60b84f4d883e06ccc5 173 Pfam PF00293 NUDIX domain 36 146 4.5E-8 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMJ96_CH00903 7ab13a072f1538b14829d1cc5b14cec3 183 SUPERFAMILY SSF52540 7 179 9.55E-16 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00903 7ab13a072f1538b14829d1cc5b14cec3 183 Pfam PF13238 AAA domain 11 135 2.8E-9 T 12-10-2018 AMJ96_CH00903 7ab13a072f1538b14829d1cc5b14cec3 183 Gene3D G3DSA:3.40.50.300 6 182 2.7E-20 T 12-10-2018 AMJ96_CH02908 26b50b34544f20e462b82d49c878ade1 339 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 1 329 45.43 T 12-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMJ96_CH02908 26b50b34544f20e462b82d49c878ade1 339 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 178 4.3E-72 T 12-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMJ96_CH02908 26b50b34544f20e462b82d49c878ade1 339 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 184 327 5.4E-66 T 12-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMJ96_CH02908 26b50b34544f20e462b82d49c878ade1 339 Gene3D G3DSA:1.10.3730.40 183 339 3.1E-75 T 12-10-2018 AMJ96_CH02908 26b50b34544f20e462b82d49c878ade1 339 SUPERFAMILY SSF51735 1 183 3.22E-71 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02908 26b50b34544f20e462b82d49c878ade1 339 SUPERFAMILY SSF48179 184 333 2.04E-71 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 AMJ96_CH02908 26b50b34544f20e462b82d49c878ade1 339 Gene3D G3DSA:3.40.50.720 1 182 1.5E-71 T 12-10-2018 AMJ96_CH02908 26b50b34544f20e462b82d49c878ade1 339 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 14 327 1.0E-126 T 12-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMJ96_CH02908 26b50b34544f20e462b82d49c878ade1 339 PIRSF PIRSF000116 5 205 3.1E-41 T 12-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMJ96_CH02908 26b50b34544f20e462b82d49c878ade1 339 PIRSF PIRSF000116 202 333 3.4E-14 T 12-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AMJ96_CH00572 364c74fbdb76e3dfa51ffcc19d057d4d 307 Pfam PF01925 Sulfite exporter TauE/SafE 18 287 1.0E-47 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMJ96_CH03399 8535f458629ba928397b45af9a939c34 392 Gene3D G3DSA:3.90.550.10 68 313 8.4E-46 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03399 8535f458629ba928397b45af9a939c34 392 SUPERFAMILY SSF53448 86 335 2.25E-50 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03399 8535f458629ba928397b45af9a939c34 392 Pfam PF00535 Glycosyl transferase family 2 90 260 9.7E-25 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_CH03884 af3e24ebf7a6c7af5bd42d232d1b2eeb 358 Pfam PF03824 High-affinity nickel-transport protein 79 356 8.5E-81 T 12-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 AMJ96_PC00168 016dc799907d2873a4ae24b55bdf12ba 287 Pfam PF00482 Type II secretion system (T2SS), protein F 120 244 1.5E-11 T 12-10-2018 IPR018076 Type II secretion system F domain AMJ96_PC00168 016dc799907d2873a4ae24b55bdf12ba 287 Gene3D G3DSA:1.20.81.30 112 225 1.8E-5 T 12-10-2018 AMJ96_PC00329 8cf3a73a828e5577cbc87d0e1082d1ba 317 Gene3D G3DSA:1.20.81.30 145 252 1.2E-8 T 12-10-2018 AMJ96_PC00329 8cf3a73a828e5577cbc87d0e1082d1ba 317 Pfam PF00482 Type II secretion system (T2SS), protein F 152 274 9.5E-19 T 12-10-2018 IPR018076 Type II secretion system F domain AMJ96_PC00143 8633226d34392df7acd361a4c2c1e049 848 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 71 86 2.6E-17 T 12-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMJ96_PC00143 8633226d34392df7acd361a4c2c1e049 848 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 140 154 2.6E-17 T 12-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMJ96_PC00143 8633226d34392df7acd361a4c2c1e049 848 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 240 252 2.6E-17 T 12-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 AMJ96_PC00143 8633226d34392df7acd361a4c2c1e049 848 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 241 252 - T 12-10-2018 IPR033116 Serine proteases, trypsin family, serine active site AMJ96_PC00143 8633226d34392df7acd361a4c2c1e049 848 Pfam PF14326 Domain of unknown function (DUF4384) 703 794 1.1E-19 T 12-10-2018 IPR025493 Domain of unknown function DUF4384 AMJ96_PC00143 8633226d34392df7acd361a4c2c1e049 848 Pfam PF00656 Caspase domain 394 604 6.3E-22 T 12-10-2018 AMJ96_PC00143 8633226d34392df7acd361a4c2c1e049 848 SUPERFAMILY SSF50494 17 297 1.75E-74 T 12-10-2018 IPR009003 Peptidase S1, PA clan AMJ96_PC00143 8633226d34392df7acd361a4c2c1e049 848 SMART SM00020 37 291 4.5E-83 T 12-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMJ96_PC00143 8633226d34392df7acd361a4c2c1e049 848 Gene3D G3DSA:2.40.10.10 33 297 7.6E-74 T 12-10-2018 AMJ96_PC00143 8633226d34392df7acd361a4c2c1e049 848 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 81 86 - T 12-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 AMJ96_PC00143 8633226d34392df7acd361a4c2c1e049 848 Gene3D G3DSA:3.40.50.1460 392 659 2.8E-33 T 12-10-2018 AMJ96_PC00143 8633226d34392df7acd361a4c2c1e049 848 Pfam PF00089 Trypsin 38 291 4.7E-58 T 12-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AMJ96_PD00339 78befd2bcafda45e1c844a0beb5c19fd 502 Pfam PF00614 Phospholipase D Active site motif 146 169 5.5E-7 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AMJ96_PD00339 78befd2bcafda45e1c844a0beb5c19fd 502 Gene3D G3DSA:3.30.870.10 265 422 6.4E-17 T 12-10-2018 AMJ96_PD00339 78befd2bcafda45e1c844a0beb5c19fd 502 SUPERFAMILY SSF56024 267 414 1.57E-18 T 12-10-2018 AMJ96_PD00339 78befd2bcafda45e1c844a0beb5c19fd 502 Gene3D G3DSA:3.30.870.10 31 235 6.1E-29 T 12-10-2018 AMJ96_PD00339 78befd2bcafda45e1c844a0beb5c19fd 502 SUPERFAMILY SSF56024 38 255 2.69E-31 T 12-10-2018 AMJ96_PD00339 78befd2bcafda45e1c844a0beb5c19fd 502 SMART SM00155 365 392 0.012 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AMJ96_PD00339 78befd2bcafda45e1c844a0beb5c19fd 502 SMART SM00155 142 169 0.0081 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AMJ96_PD00339 78befd2bcafda45e1c844a0beb5c19fd 502 Pfam PF13091 PLD-like domain 272 407 1.1E-9 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AMJ96_PC00018 71dd5bf1cc2f82b213421e125f3dbe12 247 Pfam PF00106 short chain dehydrogenase 6 211 4.3E-44 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00018 71dd5bf1cc2f82b213421e125f3dbe12 247 SUPERFAMILY SSF51735 4 244 7.89E-57 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00018 71dd5bf1cc2f82b213421e125f3dbe12 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 172 191 6.4E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00018 71dd5bf1cc2f82b213421e125f3dbe12 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 6.4E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00018 71dd5bf1cc2f82b213421e125f3dbe12 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 6.4E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00018 71dd5bf1cc2f82b213421e125f3dbe12 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 193 210 4.0E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00018 71dd5bf1cc2f82b213421e125f3dbe12 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 4.0E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00018 71dd5bf1cc2f82b213421e125f3dbe12 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 4.0E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00018 71dd5bf1cc2f82b213421e125f3dbe12 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 4.0E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00018 71dd5bf1cc2f82b213421e125f3dbe12 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 191 4.0E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00018 71dd5bf1cc2f82b213421e125f3dbe12 247 Gene3D G3DSA:3.40.50.720 2 246 2.8E-66 T 12-10-2018 AMJ96_PC00018 71dd5bf1cc2f82b213421e125f3dbe12 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 159 187 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_PD00360 c5c0247d88306349b8e7f438037db057 641 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 78 604 1.7E-108 T 12-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 AMJ96_PD00360 c5c0247d88306349b8e7f438037db057 641 SUPERFAMILY SSF51445 65 608 1.28E-129 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_PD00360 c5c0247d88306349b8e7f438037db057 641 Pfam PF02446 4-alpha-glucanotransferase 88 597 7.1E-106 T 12-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 AMJ96_PD00360 c5c0247d88306349b8e7f438037db057 641 Gene3D G3DSA:3.20.20.80 80 606 6.3E-110 T 12-10-2018 AMJ96_PD00230 82b90f9cc94713eeb1734dacc15311eb 344 Gene3D G3DSA:3.40.50.720 2 137 2.5E-27 T 12-10-2018 AMJ96_PD00230 82b90f9cc94713eeb1734dacc15311eb 344 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 126 1.6E-18 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_PD00230 82b90f9cc94713eeb1734dacc15311eb 344 SUPERFAMILY SSF51735 7 159 8.82E-38 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00230 82b90f9cc94713eeb1734dacc15311eb 344 SUPERFAMILY SSF55347 135 310 3.76E-22 T 12-10-2018 AMJ96_PD00230 82b90f9cc94713eeb1734dacc15311eb 344 Gene3D G3DSA:3.30.360.10 138 342 4.4E-36 T 12-10-2018 AMJ96_CH02563 ad4287bf5e5c2615c27dda710ae0ceb3 332 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 28 310 8.7E-50 T 12-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 AMJ96_CH02563 ad4287bf5e5c2615c27dda710ae0ceb3 332 Gene3D G3DSA:3.40.190.10 29 320 2.1E-29 T 12-10-2018 AMJ96_CH02563 ad4287bf5e5c2615c27dda710ae0ceb3 332 Gene3D G3DSA:3.40.190.100 113 243 2.1E-29 T 12-10-2018 AMJ96_CH02563 ad4287bf5e5c2615c27dda710ae0ceb3 332 SUPERFAMILY SSF53850 23 327 7.06E-63 T 12-10-2018 AMJ96_PA00124 61da1dc1be5721afe598cde619e750c8 52 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 1 48 1.1E-29 T 12-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type AMJ96_PA00124 61da1dc1be5721afe598cde619e750c8 52 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 2 45 4.5E-23 T 12-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type AMJ96_PA00141 f9a46fc3effa94f92c574f8c2abb73d4 179 Pfam PF00510 Cytochrome c oxidase subunit III 57 178 2.6E-11 T 12-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PA00141 f9a46fc3effa94f92c574f8c2abb73d4 179 SUPERFAMILY SSF81452 17 179 5.89E-31 T 12-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PA00141 f9a46fc3effa94f92c574f8c2abb73d4 179 Gene3D G3DSA:1.20.120.80 10 179 1.0E-29 T 12-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PC00320 467071a647b4f6267e6f2d1aac804b98 304 Pfam PF08666 SAF domain 46 111 3.8E-6 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMJ96_PC00320 467071a647b4f6267e6f2d1aac804b98 304 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 119 225 1.7E-30 T 12-10-2018 IPR031571 Flp pilus assembly protein RcpC/CpaB domain AMJ96_PC00320 467071a647b4f6267e6f2d1aac804b98 304 SMART SM00858 45 112 5.0E-7 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AMJ96_PC00320 467071a647b4f6267e6f2d1aac804b98 304 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 6 297 9.9E-73 T 12-10-2018 IPR017592 Pilus assembly, Flp-type CpaB AMJ96_CH02846 3d1dce8d7a0b1b64c12984b2d72fb52b 148 Gene3D G3DSA:3.30.530.20 1 147 3.5E-47 T 12-10-2018 IPR023393 START-like domain superfamily AMJ96_CH02846 3d1dce8d7a0b1b64c12984b2d72fb52b 148 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 14 134 7.6E-27 T 12-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like AMJ96_CH02846 3d1dce8d7a0b1b64c12984b2d72fb52b 148 SUPERFAMILY SSF55961 2 142 7.34E-37 T 12-10-2018 AMJ96_PB00432 8f2c83d5993e23c6daf3be2fd4c98452 371 Pfam PF14907 Uncharacterised nucleotidyltransferase 34 328 5.6E-69 T 12-10-2018 IPR039498 Uncharacterised nucleotidyltransferase AMJ96_PB00432 8f2c83d5993e23c6daf3be2fd4c98452 371 Gene3D G3DSA:3.30.460.40 82 191 3.9E-5 T 12-10-2018 AMJ96_CH00262 7f77102f765b572390a1a31206b28139 203 SUPERFAMILY SSF56784 2 190 8.41E-32 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_CH00262 7f77102f765b572390a1a31206b28139 203 Gene3D G3DSA:3.40.50.1000 1 194 3.0E-32 T 12-10-2018 IPR023214 HAD superfamily AMJ96_CH00262 7f77102f765b572390a1a31206b28139 203 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 71 184 4.3E-14 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH00262 7f77102f765b572390a1a31206b28139 203 Pfam PF13419 Haloacid dehalogenase-like hydrolase 94 184 2.1E-11 T 12-10-2018 AMJ96_PB00353 05f46aefbd32b9c1eaaf354e20d497c5 57 Gene3D G3DSA:1.10.10.10 1 31 5.4E-8 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00690 53bde0d57989e5afe13a61e4ae022e0e 348 SUPERFAMILY SSF51735 2 150 1.64E-43 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00690 53bde0d57989e5afe13a61e4ae022e0e 348 Gene3D G3DSA:3.40.50.720 1 119 1.5E-31 T 12-10-2018 AMJ96_PD00690 53bde0d57989e5afe13a61e4ae022e0e 348 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 1 119 1.0E-18 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_PD00690 53bde0d57989e5afe13a61e4ae022e0e 348 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 133 263 1.3E-6 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AMJ96_PD00690 53bde0d57989e5afe13a61e4ae022e0e 348 Gene3D G3DSA:3.30.360.10 121 343 5.2E-42 T 12-10-2018 AMJ96_PD00690 53bde0d57989e5afe13a61e4ae022e0e 348 SUPERFAMILY SSF55347 125 323 9.32E-34 T 12-10-2018 AMJ96_CH01394 f5c1e825ee94347421b6a80d27523a2f 735 SUPERFAMILY SSF52540 540 716 1.75E-25 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01394 f5c1e825ee94347421b6a80d27523a2f 735 Gene3D G3DSA:3.40.50.300 464 722 7.3E-45 T 12-10-2018 AMJ96_CH01394 f5c1e825ee94347421b6a80d27523a2f 735 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 542 643 2.7E-6 T 12-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AMJ96_CH03591 5a50a0e33e5c2a1567b11d168cfff20d 412 Gene3D G3DSA:3.40.190.10 141 407 5.3E-96 T 12-10-2018 AMJ96_CH03591 5a50a0e33e5c2a1567b11d168cfff20d 412 SUPERFAMILY SSF53850 41 408 1.58E-82 T 12-10-2018 AMJ96_CH03591 5a50a0e33e5c2a1567b11d168cfff20d 412 Gene3D G3DSA:3.40.190.10 49 368 5.3E-96 T 12-10-2018 AMJ96_CH03591 5a50a0e33e5c2a1567b11d168cfff20d 412 Pfam PF01547 Bacterial extracellular solute-binding protein 45 331 3.3E-46 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH01283 297db5c679991defb17c947c780db3f6 364 Gene3D G3DSA:3.40.50.2000 12 340 7.8E-82 T 12-10-2018 AMJ96_CH01283 297db5c679991defb17c947c780db3f6 364 Pfam PF00534 Glycosyl transferases group 1 169 321 1.8E-22 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 AMJ96_CH01283 297db5c679991defb17c947c780db3f6 364 SUPERFAMILY SSF53756 10 340 3.45E-56 T 12-10-2018 AMJ96_CH01283 297db5c679991defb17c947c780db3f6 364 Pfam PF13439 Glycosyltransferase Family 4 18 119 9.1E-12 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 AMJ96_CH01283 297db5c679991defb17c947c780db3f6 364 Gene3D G3DSA:3.40.50.2000 157 334 7.8E-82 T 12-10-2018 AMJ96_PD00596 517fa38fb9954e9500882d7686db7a2e 338 Gene3D G3DSA:3.30.360.10 127 338 1.4E-49 T 12-10-2018 AMJ96_PD00596 517fa38fb9954e9500882d7686db7a2e 338 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 142 204 1.5E-5 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AMJ96_PD00596 517fa38fb9954e9500882d7686db7a2e 338 SUPERFAMILY SSF55347 133 304 9.65E-38 T 12-10-2018 AMJ96_PD00596 517fa38fb9954e9500882d7686db7a2e 338 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 14 117 1.7E-17 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_PD00596 517fa38fb9954e9500882d7686db7a2e 338 Gene3D G3DSA:3.40.50.720 1 123 8.6E-34 T 12-10-2018 AMJ96_PD00596 517fa38fb9954e9500882d7686db7a2e 338 SUPERFAMILY SSF51735 3 161 3.66E-45 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00678 703af7a0d64dc431f4f078ab5eda3a0a 232 Pfam PF07996 Type IV secretion system proteins 26 216 8.4E-56 T 12-10-2018 IPR014158 Type IV secretion system, VirB5 AMJ96_PD00678 703af7a0d64dc431f4f078ab5eda3a0a 232 Gene3D G3DSA:1.20.58.430 26 218 3.0E-46 T 12-10-2018 IPR023220 Type IV secretion system, VirB5-domain AMJ96_PD00678 703af7a0d64dc431f4f078ab5eda3a0a 232 TIGRFAM TIGR02791 VirB5: P-type DNA transfer protein VirB5 8 218 1.3E-68 T 12-10-2018 IPR014158 Type IV secretion system, VirB5 AMJ96_PD00678 703af7a0d64dc431f4f078ab5eda3a0a 232 SUPERFAMILY SSF101082 26 218 6.02E-42 T 12-10-2018 AMJ96_CH03955 459a6405ba2296786d3fff0e36056989 259 Gene3D G3DSA:3.40.50.720 7 258 1.3E-84 T 12-10-2018 AMJ96_CH03955 459a6405ba2296786d3fff0e36056989 259 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 254 3.6E-59 T 12-10-2018 AMJ96_CH03955 459a6405ba2296786d3fff0e36056989 259 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 187 0.009 T 12-10-2018 AMJ96_CH03955 459a6405ba2296786d3fff0e36056989 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.8E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03955 459a6405ba2296786d3fff0e36056989 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.8E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03955 459a6405ba2296786d3fff0e36056989 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 1.8E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03955 459a6405ba2296786d3fff0e36056989 259 SUPERFAMILY SSF51735 4 255 1.3E-77 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03955 459a6405ba2296786d3fff0e36056989 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.5E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03955 459a6405ba2296786d3fff0e36056989 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.5E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03955 459a6405ba2296786d3fff0e36056989 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.5E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03955 459a6405ba2296786d3fff0e36056989 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.5E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03955 459a6405ba2296786d3fff0e36056989 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.5E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03955 459a6405ba2296786d3fff0e36056989 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 1.5E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PB00331 90d0125962c6d17bb8b188395631238f 377 Hamap MF_00354 Isopentenyl-diphosphate delta-isomerase [fni]. 28 366 38.887 T 12-10-2018 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 AMJ96_PB00331 90d0125962c6d17bb8b188395631238f 377 SUPERFAMILY SSF51395 52 363 5.13E-68 T 12-10-2018 AMJ96_PB00331 90d0125962c6d17bb8b188395631238f 377 PIRSF PIRSF003314 25 373 7.1E-121 T 12-10-2018 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 AMJ96_PB00331 90d0125962c6d17bb8b188395631238f 377 TIGRFAM TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2 30 363 1.2E-111 T 12-10-2018 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 AMJ96_PB00331 90d0125962c6d17bb8b188395631238f 377 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 10 59 1.0E-14 T 12-10-2018 AMJ96_PB00331 90d0125962c6d17bb8b188395631238f 377 Gene3D G3DSA:3.20.20.70 26 372 7.2E-115 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_PB00331 90d0125962c6d17bb8b188395631238f 377 Pfam PF01070 FMN-dependent dehydrogenase 200 360 3.8E-12 T 12-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 AMJ96_PB00331 90d0125962c6d17bb8b188395631238f 377 Pfam PF01070 FMN-dependent dehydrogenase 27 121 7.4E-7 T 12-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 AMJ96_CH02970 07e9ca9fe647841ea93326969bf5a75e 1236 Pfam PF05170 AsmA family 8 125 2.2E-11 T 12-10-2018 IPR007844 AsmA AMJ96_CH02970 07e9ca9fe647841ea93326969bf5a75e 1236 Pfam PF13502 AsmA-like C-terminal region 885 1084 2.1E-26 T 12-10-2018 IPR032712 AsmA-like, C-terminal AMJ96_CH02970 07e9ca9fe647841ea93326969bf5a75e 1236 PIRSF PIRSF034039 2 1226 0.0 T 12-10-2018 IPR017023 Uncharacterised conserved protein UCP034039 AMJ96_CH02263 97bf83529c4f32f5cab9b6a7886254b3 144 Pfam PF00571 CBS domain 14 63 1.5E-9 T 12-10-2018 IPR000644 CBS domain AMJ96_CH02263 97bf83529c4f32f5cab9b6a7886254b3 144 Pfam PF00571 CBS domain 75 125 3.7E-12 T 12-10-2018 IPR000644 CBS domain AMJ96_CH02263 97bf83529c4f32f5cab9b6a7886254b3 144 SMART SM00116 15 63 1.5E-10 T 12-10-2018 IPR000644 CBS domain AMJ96_CH02263 97bf83529c4f32f5cab9b6a7886254b3 144 SMART SM00116 81 128 2.2E-8 T 12-10-2018 IPR000644 CBS domain AMJ96_CH02263 97bf83529c4f32f5cab9b6a7886254b3 144 Gene3D G3DSA:3.10.580.10 1 144 2.1E-50 T 12-10-2018 AMJ96_CH02263 97bf83529c4f32f5cab9b6a7886254b3 144 SUPERFAMILY SSF54631 12 142 3.66E-34 T 12-10-2018 AMJ96_CH00414 4f4dda4c728da73a6ba0474cff3c72dd 212 SUPERFAMILY SSF55811 19 204 7.58E-28 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_CH00414 4f4dda4c728da73a6ba0474cff3c72dd 212 Pfam PF00293 NUDIX domain 63 170 4.0E-11 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AMJ96_CH00414 4f4dda4c728da73a6ba0474cff3c72dd 212 Gene3D G3DSA:3.90.79.10 16 211 8.2E-34 T 12-10-2018 AMJ96_PC00327 639e38c35ddc28c702f2dfad419394a4 190 SUPERFAMILY SSF141523 53 189 1.11E-26 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_PC00327 639e38c35ddc28c702f2dfad419394a4 190 Pfam PF03734 L,D-transpeptidase catalytic domain 58 189 6.3E-15 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMJ96_PC00327 639e38c35ddc28c702f2dfad419394a4 190 Gene3D G3DSA:2.40.440.10 27 190 3.3E-37 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH04263 4ba476cf09ebf5e2682d1fb4373d85c5 240 SUPERFAMILY SSF55144 7 236 1.2E-64 T 12-10-2018 IPR009097 Cyclic phosphodiesterase AMJ96_CH04263 4ba476cf09ebf5e2682d1fb4373d85c5 240 Pfam PF08975 Domain of unknown function (DUF1868) 28 141 3.5E-39 T 12-10-2018 IPR015069 Domain of unknown function DUF1868 AMJ96_CH04263 4ba476cf09ebf5e2682d1fb4373d85c5 240 Gene3D G3DSA:3.90.1140.10 2 239 3.6E-72 T 12-10-2018 AMJ96_CH02338 23a744131d6a11e7fa8fa7609f381e0c 184 Gene3D G3DSA:3.40.50.1820 1 183 8.2E-51 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02338 23a744131d6a11e7fa8fa7609f381e0c 184 SUPERFAMILY SSF53474 8 179 3.73E-33 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02338 23a744131d6a11e7fa8fa7609f381e0c 184 Pfam PF06821 Serine hydrolase 8 176 5.8E-69 T 12-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 AMJ96_CH00313 cf2119a73417a3e314e1ffc48020e1bf 358 SUPERFAMILY SSF56112 39 149 1.4E-5 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily AMJ96_CH00313 cf2119a73417a3e314e1ffc48020e1bf 358 Pfam PF10009 Uncharacterized protein conserved in bacteria (DUF2252) 28 121 1.6E-21 T 12-10-2018 IPR018721 Protein of unknown function DUF2252 AMJ96_CH03747 0d462d2564b0da348934fb1371372d4a 63 Pfam PF06698 Protein of unknown function (DUF1192) 5 62 5.7E-25 T 12-10-2018 IPR009579 Protein of unknown function DUF1192 AMJ96_CH02905 2865f444a6dba1a80f4910e69a25e894 324 SUPERFAMILY SSF51445 175 296 3.79E-11 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH02905 2865f444a6dba1a80f4910e69a25e894 324 SUPERFAMILY SSF51445 6 193 1.43E-24 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily AMJ96_CH02905 2865f444a6dba1a80f4910e69a25e894 324 Gene3D G3DSA:3.20.20.80 193 302 1.4E-5 T 12-10-2018 AMJ96_CH02905 2865f444a6dba1a80f4910e69a25e894 324 Gene3D G3DSA:3.20.20.80 2 192 7.2E-23 T 12-10-2018 AMJ96_CH02442 b4ec2bf5526894444f9068c989f88b91 633 Gene3D G3DSA:2.40.440.10 343 614 9.5E-26 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH02442 b4ec2bf5526894444f9068c989f88b91 633 Pfam PF01471 Putative peptidoglycan binding domain 313 372 1.6E-6 T 12-10-2018 IPR002477 Peptidoglycan binding-like AMJ96_CH02442 b4ec2bf5526894444f9068c989f88b91 633 SUPERFAMILY SSF47090 295 372 5.57E-8 T 12-10-2018 IPR036365 PGBD-like superfamily AMJ96_CH02442 b4ec2bf5526894444f9068c989f88b91 633 SUPERFAMILY SSF141523 399 557 3.92E-19 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH02442 b4ec2bf5526894444f9068c989f88b91 633 Pfam PF03734 L,D-transpeptidase catalytic domain 401 563 1.9E-28 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMJ96_CH01761 d26bfd9cee214ecfa3672313ed92a5fe 349 Pfam PF00356 Bacterial regulatory proteins, lacI family 9 52 6.3E-16 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH01761 d26bfd9cee214ecfa3672313ed92a5fe 349 SUPERFAMILY SSF47413 5 63 1.91E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH01761 d26bfd9cee214ecfa3672313ed92a5fe 349 Gene3D G3DSA:3.40.50.2300 68 328 4.5E-72 T 12-10-2018 AMJ96_CH01761 d26bfd9cee214ecfa3672313ed92a5fe 349 Gene3D G3DSA:3.40.50.2300 167 333 4.5E-72 T 12-10-2018 AMJ96_CH01761 d26bfd9cee214ecfa3672313ed92a5fe 349 SUPERFAMILY SSF53822 66 338 5.3E-74 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH01761 d26bfd9cee214ecfa3672313ed92a5fe 349 Pfam PF13377 Periplasmic binding protein-like domain 175 336 2.9E-36 T 12-10-2018 AMJ96_CH01761 d26bfd9cee214ecfa3672313ed92a5fe 349 Gene3D G3DSA:1.10.260.40 1 61 2.4E-18 T 12-10-2018 AMJ96_CH01761 d26bfd9cee214ecfa3672313ed92a5fe 349 SMART SM00354 5 77 7.6E-23 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AMJ96_CH01761 d26bfd9cee214ecfa3672313ed92a5fe 349 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 12-10-2018 AMJ96_CH00847 9f18135619dc27cae9dfb55f459a7dfe 139 Pfam PF07681 DoxX 6 86 9.2E-18 T 12-10-2018 IPR032808 DoxX family AMJ96_CH03610 b1be165afe2edf9d5627c35aaec79c3f 369 Pfam PF01757 Acyltransferase family 16 329 3.0E-13 T 12-10-2018 IPR002656 Acyltransferase 3 GO:0016747 AMJ96_CH03108 2f65d202963ab6f0867f841e3c58a070 296 Pfam PF00892 EamA-like transporter family 151 283 1.3E-20 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH03108 2f65d202963ab6f0867f841e3c58a070 296 Pfam PF00892 EamA-like transporter family 7 140 2.1E-17 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH03108 2f65d202963ab6f0867f841e3c58a070 296 SUPERFAMILY SSF103481 191 289 5.1E-12 T 12-10-2018 AMJ96_CH03108 2f65d202963ab6f0867f841e3c58a070 296 SUPERFAMILY SSF103481 40 143 8.5E-13 T 12-10-2018 AMJ96_CH03863 cfbc15fa69593980e5f0b7f0f5d5bacb 250 SUPERFAMILY SSF55729 22 218 1.53E-14 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH03863 cfbc15fa69593980e5f0b7f0f5d5bacb 250 Gene3D G3DSA:3.40.630.30 24 204 2.0E-24 T 12-10-2018 AMJ96_CH03724 57ef81e0de9d0c3e9b92589ea720fb85 460 Gene3D G3DSA:3.40.50.1820 251 459 3.9E-9 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH03724 57ef81e0de9d0c3e9b92589ea720fb85 460 SUPERFAMILY SSF53474 39 164 3.59E-8 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH03724 57ef81e0de9d0c3e9b92589ea720fb85 460 PIRSF PIRSF029063 1 460 4.4E-168 T 12-10-2018 IPR011225 Type IV secretory pathway, VirJ component AMJ96_CH03724 57ef81e0de9d0c3e9b92589ea720fb85 460 Pfam PF06057 Bacterial virulence protein (VirJ) 266 457 1.2E-82 T 12-10-2018 IPR010333 Bacterial virulence AMJ96_CH03724 57ef81e0de9d0c3e9b92589ea720fb85 460 SUPERFAMILY SSF53474 254 454 6.12E-17 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH03724 57ef81e0de9d0c3e9b92589ea720fb85 460 Gene3D G3DSA:3.40.50.1820 31 236 3.6E-6 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH03775 c842cff41142da7a7d6f99031028ed0c 67 Gene3D G3DSA:1.20.58.660 12 62 1.5E-5 T 12-10-2018 AMJ96_CH03775 c842cff41142da7a7d6f99031028ed0c 67 Pfam PF04325 Protein of unknown function (DUF465) 14 58 2.1E-12 T 12-10-2018 IPR007420 Protein of unknown function DUF465 AMJ96_CH02201 d341bb45b6f198a7f239a305ebd9a212 348 Pfam PF00491 Arginase family 68 336 2.4E-80 T 12-10-2018 IPR006035 Ureohydrolase GO:0046872 AMJ96_CH02201 d341bb45b6f198a7f239a305ebd9a212 348 SUPERFAMILY SSF52768 57 339 9.71E-84 T 12-10-2018 IPR023696 Ureohydrolase domain superfamily AMJ96_CH02201 d341bb45b6f198a7f239a305ebd9a212 348 Gene3D G3DSA:3.40.800.10 37 347 1.9E-100 T 12-10-2018 AMJ96_CH02201 d341bb45b6f198a7f239a305ebd9a212 348 ProSitePatterns PS01053 Arginase family signature. 267 288 - T 12-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 AMJ96_CH02201 d341bb45b6f198a7f239a305ebd9a212 348 TIGRFAM TIGR01230 agmatinase: agmatinase 61 337 1.4E-55 T 12-10-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 AMJ96_CH02201 d341bb45b6f198a7f239a305ebd9a212 348 PIRSF PIRSF036979 43 343 1.1E-92 T 12-10-2018 IPR006035 Ureohydrolase GO:0046872 AMJ96_CH00176 acb1621563dd93e97783a9b2031e03c2 211 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 183 2.0E-40 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMJ96_CH00176 acb1621563dd93e97783a9b2031e03c2 211 PIRSF PIRSF000709 2 204 3.5E-8 T 12-10-2018 AMJ96_CH00176 acb1621563dd93e97783a9b2031e03c2 211 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 4 123 2.9E-48 T 12-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 AMJ96_CH00176 acb1621563dd93e97783a9b2031e03c2 211 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 2 204 37.139 T 12-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 AMJ96_CH00176 acb1621563dd93e97783a9b2031e03c2 211 SUPERFAMILY SSF53254 1 208 2.24E-64 T 12-10-2018 IPR029033 Histidine phosphatase superfamily AMJ96_CH00176 acb1621563dd93e97783a9b2031e03c2 211 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 7 16 - T 12-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 AMJ96_CH00176 acb1621563dd93e97783a9b2031e03c2 211 SMART SM00855 4 165 2.0E-22 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMJ96_CH00176 acb1621563dd93e97783a9b2031e03c2 211 Gene3D G3DSA:3.40.50.1240 2 209 3.4E-68 T 12-10-2018 IPR029033 Histidine phosphatase superfamily AMJ96_CH03784 d29e887e17f21d3f27241e493b8b0d19 139 SUPERFAMILY SSF55331 2 127 5.5E-41 T 12-10-2018 IPR014347 Tautomerase/MIF superfamily AMJ96_CH03784 d29e887e17f21d3f27241e493b8b0d19 139 Gene3D G3DSA:3.30.429.10 1 130 4.4E-49 T 12-10-2018 IPR014347 Tautomerase/MIF superfamily AMJ96_CH03784 d29e887e17f21d3f27241e493b8b0d19 139 Pfam PF14552 Tautomerase enzyme 38 119 1.7E-32 T 12-10-2018 IPR037479 Tautomerase, MSAD family AMJ96_PC00115 32edbaa56c34cb265b7c6f7c0aa1ec24 319 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 301 6.7E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00115 32edbaa56c34cb265b7c6f7c0aa1ec24 319 Gene3D G3DSA:1.10.3720.10 71 312 1.5E-69 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00115 32edbaa56c34cb265b7c6f7c0aa1ec24 319 SUPERFAMILY SSF161098 75 299 1.06E-62 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00115 32edbaa56c34cb265b7c6f7c0aa1ec24 319 SUPERFAMILY SSF160964 32 61 4.45E-6 T 12-10-2018 AMJ96_CH02857 39c5f0467414a121870f3df823d72611 194 Gene3D G3DSA:1.10.357.10 1 190 2.2E-64 T 12-10-2018 AMJ96_CH02857 39c5f0467414a121870f3df823d72611 194 SUPERFAMILY SSF46689 6 83 1.6E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02857 39c5f0467414a121870f3df823d72611 194 SUPERFAMILY SSF48498 78 183 5.56E-27 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH02857 39c5f0467414a121870f3df823d72611 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 54 8.6E-12 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH02857 39c5f0467414a121870f3df823d72611 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 7.3E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH02857 39c5f0467414a121870f3df823d72611 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 7.3E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH00156 26da51442c620710fb0a811018b65377 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 62 77 1.6E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00156 26da51442c620710fb0a811018b65377 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 111 131 1.6E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00156 26da51442c620710fb0a811018b65377 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 45 61 1.6E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00156 26da51442c620710fb0a811018b65377 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 81 97 1.6E-8 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00156 26da51442c620710fb0a811018b65377 138 Pfam PF01047 MarR family 29 85 3.8E-14 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00156 26da51442c620710fb0a811018b65377 138 SUPERFAMILY SSF46785 6 135 2.1E-29 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH00156 26da51442c620710fb0a811018b65377 138 Gene3D G3DSA:1.10.10.10 2 136 2.8E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00156 26da51442c620710fb0a811018b65377 138 SMART SM00347 21 121 4.1E-18 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH00156 26da51442c620710fb0a811018b65377 138 ProSitePatterns PS01117 MarR-type HTH domain signature. 60 94 - T 12-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AMJ96_PD00140 c9bcedf8d9eb89265cd65e55e78fc3b8 98 Pfam PF09928 Predicted small integral membrane protein (DUF2160) 10 98 8.7E-37 T 12-10-2018 IPR018678 Protein of unknown function DUF2160, transmembrane AMJ96_PD00661 7dd8b9ffe9b2abcae34b23c3bf17fd22 107 Pfam PF05284 Protein of unknown function (DUF736) 4 105 1.1E-23 T 12-10-2018 IPR007948 Protein of unknown function DUF736 AMJ96_PA00280 0ce2366325e62f051ac9352a5b03fb4f 513 Pfam PF13777 Domain of unknown function (DUF4173) 251 441 2.6E-47 T 12-10-2018 IPR025231 Domain of unknown function DUF4173 AMJ96_CH04254 0f5013e875a05c61ec1dd1e4b48e6b70 226 Gene3D G3DSA:1.10.3720.10 7 218 6.2E-52 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH04254 0f5013e875a05c61ec1dd1e4b48e6b70 226 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 215 3.3E-20 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH04254 0f5013e875a05c61ec1dd1e4b48e6b70 226 SUPERFAMILY SSF161098 14 201 6.8E-47 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH04254 0f5013e875a05c61ec1dd1e4b48e6b70 226 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 15 110 2.3E-30 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_CH02920 b742cd2760a42472aaff8dad2bb2fe86 352 Gene3D G3DSA:3.90.550.10 1 190 3.0E-37 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH02920 b742cd2760a42472aaff8dad2bb2fe86 352 Pfam PF00535 Glycosyl transferase family 2 8 169 4.5E-31 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_CH02920 b742cd2760a42472aaff8dad2bb2fe86 352 SUPERFAMILY SSF53448 7 252 4.69E-39 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_PD00232 6ef18403739ca10ece4cec6be7ea34eb 289 SUPERFAMILY SSF51695 45 281 2.3E-18 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMJ96_PD00232 6ef18403739ca10ece4cec6be7ea34eb 289 Gene3D G3DSA:3.20.20.190 28 285 2.9E-17 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 AMJ96_CH00593 4222e908786b713c91e61b43e64f9f9d 86 Pfam PF04972 BON domain 21 83 2.8E-7 T 12-10-2018 IPR007055 BON domain AMJ96_PB00053 ed76295665e898b516992dc9acc13fa8 253 SMART SM00849 31 237 1.2E-19 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_PB00053 ed76295665e898b516992dc9acc13fa8 253 Pfam PF00753 Metallo-beta-lactamase superfamily 29 227 6.5E-22 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_PB00053 ed76295665e898b516992dc9acc13fa8 253 SUPERFAMILY SSF56281 1 240 4.46E-32 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_PB00053 ed76295665e898b516992dc9acc13fa8 253 Gene3D G3DSA:3.60.15.10 1 253 1.1E-62 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH04025 30e70adb3c3830ba70f09ea99f622725 170 PIRSF PIRSF033913 8 170 1.3E-64 T 12-10-2018 IPR024199 Uncharacterised conserved protein, DsbB-like AMJ96_CH04025 30e70adb3c3830ba70f09ea99f622725 170 Gene3D G3DSA:1.20.1550.10 9 169 6.3E-16 T 12-10-2018 IPR023380 DsbB-like superfamily AMJ96_CH04025 30e70adb3c3830ba70f09ea99f622725 170 SUPERFAMILY SSF158442 16 164 8.24E-32 T 12-10-2018 IPR023380 DsbB-like superfamily AMJ96_CH04025 30e70adb3c3830ba70f09ea99f622725 170 Pfam PF02600 Disulfide bond formation protein DsbB 15 164 3.1E-29 T 12-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 AMJ96_CH02500 4f1e4daa86f59a7a494dbbda82888eb1 145 SUPERFAMILY SSF54631 1 117 8.46E-30 T 12-10-2018 AMJ96_CH02500 4f1e4daa86f59a7a494dbbda82888eb1 145 SMART SM00116 74 122 3.0E-5 T 12-10-2018 IPR000644 CBS domain AMJ96_CH02500 4f1e4daa86f59a7a494dbbda82888eb1 145 SMART SM00116 10 57 0.022 T 12-10-2018 IPR000644 CBS domain AMJ96_CH02500 4f1e4daa86f59a7a494dbbda82888eb1 145 Gene3D G3DSA:3.10.580.10 1 139 1.2E-32 T 12-10-2018 AMJ96_CH02500 4f1e4daa86f59a7a494dbbda82888eb1 145 Pfam PF00571 CBS domain 67 118 2.0E-11 T 12-10-2018 IPR000644 CBS domain AMJ96_CH02500 4f1e4daa86f59a7a494dbbda82888eb1 145 Pfam PF00571 CBS domain 4 53 3.9E-7 T 12-10-2018 IPR000644 CBS domain AMJ96_CH02279 f055c04c3d6013093a91a4605ec1516c 170 Pfam PF04972 BON domain 95 160 3.1E-9 T 12-10-2018 IPR007055 BON domain AMJ96_PC00421 2f3fc3db1e8574ba171174523e978d37 86 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 78 1.1E-19 T 12-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AMJ96_PC00421 2f3fc3db1e8574ba171174523e978d37 86 Pfam PF03776 Septum formation topological specificity factor MinE 12 78 2.2E-19 T 12-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AMJ96_PC00421 2f3fc3db1e8574ba171174523e978d37 86 SUPERFAMILY SSF55229 30 81 3.01E-12 T 12-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 AMJ96_PC00421 2f3fc3db1e8574ba171174523e978d37 86 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 81 15.416 T 12-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AMJ96_PC00421 2f3fc3db1e8574ba171174523e978d37 86 Gene3D G3DSA:3.30.1070.10 1 79 1.4E-21 T 12-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 AMJ96_PC00014 a4b2ff0528f8a96ebf43920afa738693 146 SUPERFAMILY SSF52172 17 131 1.99E-16 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_PC00014 a4b2ff0528f8a96ebf43920afa738693 146 Pfam PF00072 Response regulator receiver domain 19 121 2.6E-10 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_PC00014 a4b2ff0528f8a96ebf43920afa738693 146 Gene3D G3DSA:3.40.50.2300 15 135 3.7E-25 T 12-10-2018 AMJ96_PC00014 a4b2ff0528f8a96ebf43920afa738693 146 SMART SM00448 17 124 2.8E-9 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH00883 565f4994e022cbff7233a16ce54fda13 403 Gene3D G3DSA:1.10.10.2520 270 353 1.3E-21 T 12-10-2018 AMJ96_CH00883 565f4994e022cbff7233a16ce54fda13 403 Pfam PF07486 Cell Wall Hydrolase 285 395 6.4E-26 T 12-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 AMJ96_CH02413 a396672e4e0da8e314f0fb2ad3accf1d 327 Gene3D G3DSA:3.30.390.10 1 105 6.3E-31 T 12-10-2018 IPR029017 Enolase-like, N-terminal AMJ96_CH02413 a396672e4e0da8e314f0fb2ad3accf1d 327 Pfam PF13378 Enolase C-terminal domain-like 135 289 4.6E-23 T 12-10-2018 IPR029065 Enolase C-terminal domain-like AMJ96_CH02413 a396672e4e0da8e314f0fb2ad3accf1d 327 SMART SM00922 131 222 5.0E-17 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AMJ96_CH02413 a396672e4e0da8e314f0fb2ad3accf1d 327 Gene3D G3DSA:3.20.20.120 107 327 7.5E-58 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_CH02413 a396672e4e0da8e314f0fb2ad3accf1d 327 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 13 113 1.2E-11 T 12-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AMJ96_CH02413 a396672e4e0da8e314f0fb2ad3accf1d 327 SUPERFAMILY SSF51604 119 327 1.7E-52 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_CH02413 a396672e4e0da8e314f0fb2ad3accf1d 327 SUPERFAMILY SSF54826 5 113 1.22E-30 T 12-10-2018 AMJ96_CH01812 44533222fc237876441fef8c8a52c91c 108 Pfam PF10115 Transcriptional activator HlyU 3 99 2.3E-34 T 12-10-2018 IPR018772 Transcription activator HlyU AMJ96_PB00006 9ef2ea167c979603e598d62edf4fbe8c 305 SUPERFAMILY SSF53041 14 150 5.36E-41 T 12-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 AMJ96_PB00006 9ef2ea167c979603e598d62edf4fbe8c 305 ProSitePatterns PS00397 Site-specific recombinases active site. 19 27 - T 12-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 AMJ96_PB00006 9ef2ea167c979603e598d62edf4fbe8c 305 ProSitePatterns PS00398 Site-specific recombinases signature 2. 69 81 - T 12-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 AMJ96_PB00006 9ef2ea167c979603e598d62edf4fbe8c 305 SMART SM00857 16 150 3.3E-54 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMJ96_PB00006 9ef2ea167c979603e598d62edf4fbe8c 305 Gene3D G3DSA:3.40.50.1390 16 139 2.3E-43 T 12-10-2018 AMJ96_PB00006 9ef2ea167c979603e598d62edf4fbe8c 305 Pfam PF00239 Resolvase, N terminal domain 17 149 3.6E-44 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 AMJ96_CH02395 539737d1b97a5815a5b0a0873ab6b074 491 PIRSF PIRSF019381 4 491 6.4E-169 T 12-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein AMJ96_CH02395 539737d1b97a5815a5b0a0873ab6b074 491 Pfam PF04317 YcjX-like family, DUF463 31 490 4.6E-174 T 12-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein AMJ96_CH01152 eb6f7e32a2aa8cf782c58af7ec9fac98 211 SUPERFAMILY SSF53335 7 109 4.74E-15 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH01152 eb6f7e32a2aa8cf782c58af7ec9fac98 211 Pfam PF13649 Methyltransferase domain 57 109 1.2E-8 T 12-10-2018 AMJ96_CH01152 eb6f7e32a2aa8cf782c58af7ec9fac98 211 Gene3D G3DSA:3.40.50.150 5 120 8.4E-14 T 12-10-2018 AMJ96_CH01775 f547a7bd25b867e2ebedea0de0fbd758 263 Gene3D G3DSA:3.60.10.10 1 257 2.1E-73 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMJ96_CH01775 f547a7bd25b867e2ebedea0de0fbd758 263 SUPERFAMILY SSF56219 1 257 3.4E-78 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMJ96_CH01775 f547a7bd25b867e2ebedea0de0fbd758 263 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 234 1.5E-17 T 12-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase AMJ96_CH01775 f547a7bd25b867e2ebedea0de0fbd758 263 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 255 8.2E-75 T 12-10-2018 AMJ96_CH01775 f547a7bd25b867e2ebedea0de0fbd758 263 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 256 2.6E-70 T 12-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 AMJ96_CH04199 4cf8702b4d259b7bbf7500ea0ca435ce 214 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 19 208 17.573 T 12-10-2018 IPR006008 Intracellular septation protein A GO:0016021 AMJ96_CH04199 4cf8702b4d259b7bbf7500ea0ca435ce 214 Pfam PF04279 Intracellular septation protein A 19 205 1.0E-55 T 12-10-2018 IPR006008 Intracellular septation protein A GO:0016021 AMJ96_CH02141 f8563041c73233dbca560ae07b38f02e 361 Pfam PF02653 Branched-chain amino acid transport system / permease component 60 339 1.4E-44 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03335 b4d76403d115a26d7f5cf09f5dff8fcd 564 SUPERFAMILY SSF52540 9 558 3.07E-12 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03335 b4d76403d115a26d7f5cf09f5dff8fcd 564 Pfam PF13476 AAA domain 21 280 1.9E-8 T 12-10-2018 IPR038729 Rad50/SbcC-type AAA domain AMJ96_CH03335 b4d76403d115a26d7f5cf09f5dff8fcd 564 Gene3D G3DSA:3.40.50.300 4 325 2.5E-15 T 12-10-2018 AMJ96_CH00979 04c93e02015ab8bf063fb114887c11e0 213 SUPERFAMILY SSF52540 6 198 1.5E-12 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00979 04c93e02015ab8bf063fb114887c11e0 213 Gene3D G3DSA:3.40.50.300 7 196 4.3E-36 T 12-10-2018 AMJ96_CH00979 04c93e02015ab8bf063fb114887c11e0 213 PIRSF PIRSF007531 1 211 1.4E-54 T 12-10-2018 IPR012853 Chloramphenicol phosphotransferase-like GO:0005524|GO:0016740 AMJ96_CH00979 04c93e02015ab8bf063fb114887c11e0 213 Pfam PF07931 Chloramphenicol phosphotransferase-like protein 8 196 2.0E-50 T 12-10-2018 IPR012853 Chloramphenicol phosphotransferase-like GO:0005524|GO:0016740 AMJ96_CH03565 5f5a211a048f80aa053631b854857131 271 SUPERFAMILY SSF53474 16 256 7.33E-34 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH03565 5f5a211a048f80aa053631b854857131 271 Gene3D G3DSA:3.40.50.1820 2 237 3.7E-44 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH03565 5f5a211a048f80aa053631b854857131 271 Pfam PF07859 alpha/beta hydrolase fold 35 230 2.9E-37 T 12-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 AMJ96_CH00798 14c83bd6a393fa187655ed1119442e20 215 Pfam PF02348 Cytidylyltransferase 1 187 7.1E-27 T 12-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 AMJ96_CH00798 14c83bd6a393fa187655ed1119442e20 215 SUPERFAMILY SSF53448 1 195 2.21E-27 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00798 14c83bd6a393fa187655ed1119442e20 215 Gene3D G3DSA:3.90.550.10 1 198 7.2E-32 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_PB00262 c6a57cc1b0522673c9bf3899d0c653e3 277 SUPERFAMILY SSF102114 59 187 2.49E-10 T 12-10-2018 AMJ96_PB00262 c6a57cc1b0522673c9bf3899d0c653e3 277 Gene3D G3DSA:3.20.20.70 60 202 3.5E-6 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_PB00262 c6a57cc1b0522673c9bf3899d0c653e3 277 Pfam PF04055 Radical SAM superfamily 71 185 2.1E-10 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMJ96_CH00739 54e9005e71bd5b58a1c5186f80c8bc30 337 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 126 326 9.0E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00739 54e9005e71bd5b58a1c5186f80c8bc30 337 SUPERFAMILY SSF161098 95 320 1.02E-45 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00739 54e9005e71bd5b58a1c5186f80c8bc30 337 Gene3D G3DSA:1.10.3720.10 90 334 1.8E-52 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00670 b79af637611a478f749afb48d16e60b9 83 SMART SM00966 4 50 0.0096 T 12-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 AMJ96_CH00801 da800996250d6e71aea8496e799768bd 210 Pfam PF02585 GlcNAc-PI de-N-acetylase 4 124 1.1E-15 T 12-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 AMJ96_CH00801 da800996250d6e71aea8496e799768bd 210 Gene3D G3DSA:3.40.50.10320 1 209 8.5E-51 T 12-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 AMJ96_CH00801 da800996250d6e71aea8496e799768bd 210 SUPERFAMILY SSF102588 1 208 5.62E-38 T 12-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 AMJ96_CH01411 8334d6cd2788541aa5fce7393c6f871b 324 Gene3D G3DSA:3.90.25.10 176 311 2.6E-87 T 12-10-2018 AMJ96_CH01411 8334d6cd2788541aa5fce7393c6f871b 324 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 244 1.8E-49 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_CH01411 8334d6cd2788541aa5fce7393c6f871b 324 SUPERFAMILY SSF51735 1 315 3.92E-86 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01411 8334d6cd2788541aa5fce7393c6f871b 324 Gene3D G3DSA:3.40.50.720 7 299 2.6E-87 T 12-10-2018 AMJ96_CH03887 a68cbd3b2225d300032a1181d7471014 239 Gene3D G3DSA:1.10.3680.10 112 237 1.5E-9 T 12-10-2018 IPR029024 TerB-like AMJ96_CH03887 a68cbd3b2225d300032a1181d7471014 239 SUPERFAMILY SSF158682 74 231 4.58E-23 T 12-10-2018 IPR029024 TerB-like AMJ96_CH03887 a68cbd3b2225d300032a1181d7471014 239 Pfam PF04391 Protein of unknown function (DUF533) 37 230 1.0E-57 T 12-10-2018 IPR007486 Inner membrane protein YebE AMJ96_CH01560 0cdec9fe4ebb87bb5a0083aa10692a5b 160 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 14 155 22.759 T 12-10-2018 IPR011605 NusB antitermination factor GO:0006353 AMJ96_CH01560 0cdec9fe4ebb87bb5a0083aa10692a5b 160 Gene3D G3DSA:1.10.940.10 10 159 1.0E-38 T 12-10-2018 IPR035926 NusB-like superfamily AMJ96_CH01560 0cdec9fe4ebb87bb5a0083aa10692a5b 160 Pfam PF01029 NusB family 19 152 2.1E-31 T 12-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AMJ96_CH01560 0cdec9fe4ebb87bb5a0083aa10692a5b 160 SUPERFAMILY SSF48013 15 157 8.9E-37 T 12-10-2018 IPR035926 NusB-like superfamily AMJ96_CH01560 0cdec9fe4ebb87bb5a0083aa10692a5b 160 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 16 153 5.1E-40 T 12-10-2018 IPR011605 NusB antitermination factor GO:0006353 AMJ96_PD00054 df38ce3e3057be432cbafa5dd62ff4e3 571 ProSitePatterns PS00609 Glycosyl hydrolases family 32 active site. 122 135 - T 12-10-2018 IPR018053 Glycoside hydrolase, family 32, active site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 AMJ96_PD00054 df38ce3e3057be432cbafa5dd62ff4e3 571 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 122 427 2.1E-61 T 12-10-2018 IPR013148 Glycosyl hydrolase family 32, N-terminal AMJ96_PD00054 df38ce3e3057be432cbafa5dd62ff4e3 571 Gene3D G3DSA:2.60.120.560 456 571 3.5E-6 T 12-10-2018 AMJ96_PD00054 df38ce3e3057be432cbafa5dd62ff4e3 571 SMART SM00640 122 535 2.9E-59 T 12-10-2018 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 AMJ96_PD00054 df38ce3e3057be432cbafa5dd62ff4e3 571 SUPERFAMILY SSF49899 431 569 2.06E-8 T 12-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily AMJ96_PD00054 df38ce3e3057be432cbafa5dd62ff4e3 571 SUPERFAMILY SSF75005 120 431 6.91E-70 T 12-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily AMJ96_PD00054 df38ce3e3057be432cbafa5dd62ff4e3 571 Gene3D G3DSA:2.115.10.20 111 447 2.7E-80 T 12-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily AMJ96_PD00278 93f362d7bfa1b209457ca5185f9735f5 335 SUPERFAMILY SSF53187 9 331 1.29E-58 T 12-10-2018 AMJ96_PD00278 93f362d7bfa1b209457ca5185f9735f5 335 TIGRFAM TIGR02994 ectoine_eutE: ectoine utilization protein EutE 7 331 1.8E-185 T 12-10-2018 IPR014336 N-alpha-acetyl diaminobutyrate deacetylase DoeB KEGG: 00260+3.5.1.125|MetaCyc: PWY-7855 AMJ96_PD00278 93f362d7bfa1b209457ca5185f9735f5 335 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 52 331 1.4E-81 T 12-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 AMJ96_PD00278 93f362d7bfa1b209457ca5185f9735f5 335 PIRSF PIRSF039012 4 335 3.9E-87 T 12-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 AMJ96_PD00278 93f362d7bfa1b209457ca5185f9735f5 335 Gene3D G3DSA:3.40.630.10 6 334 4.6E-118 T 12-10-2018 AMJ96_CH03497 490a757175537b0c14f2e9ccf2634e1b 637 Pfam PF03235 Protein of unknown function DUF262 14 260 1.1E-27 T 12-10-2018 IPR004919 Domain of unknown function DUF262 AMJ96_PC00324 c0b66e70f398659ddfa260fcb4022a2f 159 Pfam PF07811 TadE-like protein 22 64 1.0E-6 T 12-10-2018 IPR012495 TadE-like AMJ96_CH01695 7fec1734e6a1daf56c8ba4e093e764ff 297 Gene3D G3DSA:3.40.50.720 5 297 2.6E-48 T 12-10-2018 AMJ96_CH01695 7fec1734e6a1daf56c8ba4e093e764ff 297 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 200 1.3E-22 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_CH01695 7fec1734e6a1daf56c8ba4e093e764ff 297 SUPERFAMILY SSF51735 2 296 1.41E-53 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00073 f7a17aba80457c0534b9e9ee60120145 234 SMART SM00953 75 202 1.3E-24 T 12-10-2018 IPR014914 RES domain AMJ96_PC00073 f7a17aba80457c0534b9e9ee60120145 234 Pfam PF08808 RES domain 72 208 3.0E-20 T 12-10-2018 IPR014914 RES domain AMJ96_CH04369 4319b00d387a0d3e490a7c56c3476919 233 Pfam PF06242 Protein of unknown function (DUF1013) 35 172 5.6E-68 T 12-10-2018 IPR010421 Protein of unknown function DUF1013 AMJ96_CH02930 a4b692f40567306fb2663f611c6bc1b8 404 Gene3D G3DSA:1.20.1250.20 15 202 2.9E-18 T 12-10-2018 AMJ96_CH02930 a4b692f40567306fb2663f611c6bc1b8 404 Gene3D G3DSA:1.20.1250.20 224 400 3.6E-15 T 12-10-2018 AMJ96_CH02930 a4b692f40567306fb2663f611c6bc1b8 404 SUPERFAMILY SSF103473 9 400 8.63E-48 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH02930 a4b692f40567306fb2663f611c6bc1b8 404 Pfam PF07690 Major Facilitator Superfamily 38 335 4.1E-26 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH01769 66c9be5fda7a893988e14fe1bdb74158 512 SUPERFAMILY SSF51905 2 496 2.68E-56 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01769 66c9be5fda7a893988e14fe1bdb74158 512 Pfam PF00732 GMC oxidoreductase 200 297 2.1E-7 T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 AMJ96_CH01769 66c9be5fda7a893988e14fe1bdb74158 512 Pfam PF05199 GMC oxidoreductase 432 489 2.2E-13 T 12-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 AMJ96_CH01769 66c9be5fda7a893988e14fe1bdb74158 512 Gene3D G3DSA:3.50.50.60 184 325 8.5E-10 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01769 66c9be5fda7a893988e14fe1bdb74158 512 Gene3D G3DSA:3.50.50.60 408 502 5.4E-13 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH01769 66c9be5fda7a893988e14fe1bdb74158 512 Gene3D G3DSA:3.50.50.60 1 145 4.6E-13 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH00803 df910485bf4c1169fd946d362bef9530 304 SUPERFAMILY SSF53335 90 260 4.55E-5 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH00803 df910485bf4c1169fd946d362bef9530 304 TIGRFAM TIGR04325 MTase_LIC12133: putative methyltransferase, LIC12133 family 39 300 2.2E-80 T 12-10-2018 IPR027612 Putative methyltransferase, LIC12133 family AMJ96_PC00154 c35efad8d92fecf415929c07fdcbe7af 113 SUPERFAMILY SSF54593 3 108 1.18E-17 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_PC00154 c35efad8d92fecf415929c07fdcbe7af 113 Gene3D G3DSA:3.10.180.10 2 105 8.4E-19 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH02850 ebb4fb45c7fe8722784ef6ad2954545b 258 Gene3D G3DSA:3.40.50.410 24 190 3.6E-9 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMJ96_CH02850 ebb4fb45c7fe8722784ef6ad2954545b 258 Pfam PF06707 Protein of unknown function (DUF1194) 24 226 7.0E-77 T 12-10-2018 IPR010607 Protein of unknown function DUF1194 AMJ96_CH02850 ebb4fb45c7fe8722784ef6ad2954545b 258 SUPERFAMILY SSF53300 23 224 1.19E-12 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMJ96_CH01840 2375925fb44d235a858eaba773d4a87c 317 Gene3D G3DSA:3.40.50.720 1 313 6.3E-41 T 12-10-2018 AMJ96_CH01840 2375925fb44d235a858eaba773d4a87c 317 SUPERFAMILY SSF51735 1 312 1.57E-45 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01840 2375925fb44d235a858eaba773d4a87c 317 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 217 6.8E-15 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_CH03788 c83fe8e4afd08e142d7c699949f1938b 157 Pfam PF06282 Protein of unknown function (DUF1036) 35 147 1.3E-42 T 12-10-2018 IPR009380 Protein of unknown function DUF1036 AMJ96_CH00674 4a6950c3ff7e66bfb7b2ac70ed5413bc 473 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 48 207 6.5E-29 T 12-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like AMJ96_PA00265 e6dca0db688821ba1a824ad2735862f9 316 SUPERFAMILY SSF51658 43 309 2.35E-36 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_PA00265 e6dca0db688821ba1a824ad2735862f9 316 Pfam PF01261 Xylose isomerase-like TIM barrel 46 261 4.2E-19 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AMJ96_PA00265 e6dca0db688821ba1a824ad2735862f9 316 Gene3D G3DSA:3.20.20.150 27 312 2.9E-46 T 12-10-2018 AMJ96_CH02602 a1bb9cae399f27d6426b4f480ed487dd 241 Gene3D G3DSA:3.40.50.360 4 241 4.4E-75 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_CH02602 a1bb9cae399f27d6426b4f480ed487dd 241 SUPERFAMILY SSF52218 7 227 7.68E-64 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_CH02602 a1bb9cae399f27d6426b4f480ed487dd 241 Pfam PF03358 NADPH-dependent FMN reductase 35 178 1.4E-26 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMJ96_CH02602 a1bb9cae399f27d6426b4f480ed487dd 241 TIGRFAM TIGR02690 resist_ArsH: arsenical resistance protein ArsH 10 227 4.2E-123 T 12-10-2018 IPR014063 Arsenate resistance ArsH AMJ96_PD00036 d2d6d63410ccc7bd4261bf89d6cb39c3 344 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 173 229 3.9E-5 T 12-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 AMJ96_PD00036 d2d6d63410ccc7bd4261bf89d6cb39c3 344 SUPERFAMILY SSF51735 4 153 9.78E-42 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00036 d2d6d63410ccc7bd4261bf89d6cb39c3 344 SUPERFAMILY SSF55347 131 286 6.15E-23 T 12-10-2018 AMJ96_PD00036 d2d6d63410ccc7bd4261bf89d6cb39c3 344 Gene3D G3DSA:3.40.50.720 8 316 5.8E-72 T 12-10-2018 AMJ96_PD00036 d2d6d63410ccc7bd4261bf89d6cb39c3 344 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 7 121 1.5E-21 T 12-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AMJ96_PD00036 d2d6d63410ccc7bd4261bf89d6cb39c3 344 Gene3D G3DSA:3.30.360.10 131 335 5.8E-72 T 12-10-2018 AMJ96_CH02108 5960730f5b4363457207e963594bb31e 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 249 1.3E-57 T 12-10-2018 AMJ96_CH02108 5960730f5b4363457207e963594bb31e 254 Gene3D G3DSA:3.40.50.720 2 253 7.0E-72 T 12-10-2018 AMJ96_CH02108 5960730f5b4363457207e963594bb31e 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 3.3E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02108 5960730f5b4363457207e963594bb31e 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.3E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02108 5960730f5b4363457207e963594bb31e 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 3.3E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02108 5960730f5b4363457207e963594bb31e 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 3.3E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02108 5960730f5b4363457207e963594bb31e 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 3.3E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02108 5960730f5b4363457207e963594bb31e 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 3.3E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02108 5960730f5b4363457207e963594bb31e 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 6.6E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02108 5960730f5b4363457207e963594bb31e 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 6.6E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02108 5960730f5b4363457207e963594bb31e 254 SUPERFAMILY SSF51735 5 249 3.59E-71 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00140 306b1598ad113cd776c42e67930764c1 315 Pfam PF03547 Membrane transport protein 4 153 3.2E-17 T 12-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AMJ96_CH00140 306b1598ad113cd776c42e67930764c1 315 Pfam PF03547 Membrane transport protein 157 309 6.5E-16 T 12-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AMJ96_CH02217 8345f118d9c0ab1a82d8b7f06dfe820d 340 Gene3D G3DSA:3.40.50.300 21 196 7.1E-44 T 12-10-2018 AMJ96_CH02217 8345f118d9c0ab1a82d8b7f06dfe820d 340 Pfam PF13177 DNA polymerase III, delta subunit 24 196 1.8E-39 T 12-10-2018 AMJ96_CH02217 8345f118d9c0ab1a82d8b7f06dfe820d 340 SUPERFAMILY SSF52540 21 231 4.68E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02968 c0345b37b89e3f63138453a0968833c5 64 Pfam PF13770 Domain of unknown function (DUF4169) 3 52 1.7E-20 T 12-10-2018 IPR025227 Protein of unknown function DUF4169 AMJ96_CH02594 6da9c52568b8782fa3f99be083a5a83d 322 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 309 3.3E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02594 6da9c52568b8782fa3f99be083a5a83d 322 SUPERFAMILY SSF161098 81 308 5.49E-56 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02594 6da9c52568b8782fa3f99be083a5a83d 322 SUPERFAMILY SSF160964 31 91 1.11E-9 T 12-10-2018 AMJ96_CH02594 6da9c52568b8782fa3f99be083a5a83d 322 Gene3D G3DSA:1.10.3720.10 79 322 2.5E-63 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00395 8c76a4b0e0b0ff2b0f261fa1970f7e21 265 Pfam PF01553 Acyltransferase 55 182 4.8E-20 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMJ96_CH00395 8c76a4b0e0b0ff2b0f261fa1970f7e21 265 SMART SM00563 67 186 1.7E-28 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMJ96_CH00395 8c76a4b0e0b0ff2b0f261fa1970f7e21 265 SUPERFAMILY SSF69593 5 257 6.54E-28 T 12-10-2018 AMJ96_PD00324 b52efb5b04b052b2c4c4d8a8e94c5eef 373 Gene3D G3DSA:1.10.3720.10 154 368 9.6E-19 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00324 b52efb5b04b052b2c4c4d8a8e94c5eef 373 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 183 370 2.8E-26 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00324 b52efb5b04b052b2c4c4d8a8e94c5eef 373 SUPERFAMILY SSF161098 161 356 7.33E-21 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00324 b52efb5b04b052b2c4c4d8a8e94c5eef 373 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 18 70 8.7E-11 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMJ96_PD00098 afdbd9d72cbe0a71a5f1a346fc3624ca 328 SUPERFAMILY SSF51735 1 321 5.65E-42 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00098 afdbd9d72cbe0a71a5f1a346fc3624ca 328 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 213 6.9E-20 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_PD00098 afdbd9d72cbe0a71a5f1a346fc3624ca 328 Gene3D G3DSA:3.90.25.10 179 315 1.7E-114 T 12-10-2018 AMJ96_PD00098 afdbd9d72cbe0a71a5f1a346fc3624ca 328 Gene3D G3DSA:3.40.50.720 7 306 1.7E-114 T 12-10-2018 AMJ96_CH01596 4a54c5335cb5efd4341ff008a2713b03 69 Pfam PF11003 Protein of unknown function (DUF2842) 6 65 3.0E-21 T 12-10-2018 IPR021265 Protein of unknown function DUF2842 AMJ96_CH03487 e7c6160440afad474a5dc40931bebc14 907 Gene3D G3DSA:3.20.20.140 52 238 1.1E-15 T 12-10-2018 AMJ96_CH03487 e7c6160440afad474a5dc40931bebc14 907 Gene3D G3DSA:3.40.50.300 298 505 1.2E-11 T 12-10-2018 AMJ96_CH03487 e7c6160440afad474a5dc40931bebc14 907 Gene3D G3DSA:3.40.50.300 732 872 5.1E-8 T 12-10-2018 AMJ96_CH03487 e7c6160440afad474a5dc40931bebc14 907 SUPERFAMILY SSF52540 299 850 1.04E-21 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03487 e7c6160440afad474a5dc40931bebc14 907 Pfam PF13476 AAA domain 301 348 1.0E-7 T 12-10-2018 IPR038729 Rad50/SbcC-type AAA domain AMJ96_CH03487 e7c6160440afad474a5dc40931bebc14 907 SUPERFAMILY SSF89550 67 183 3.92E-13 T 12-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AMJ96_PA00042 6bf1f352725965e029e0f5efa9b484d6 319 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 16 302 3.4E-38 T 12-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD AMJ96_PB00284 017a8726ef5cf4ac864a302ecf984ed2 164 Gene3D G3DSA:3.30.420.130 20 149 8.9E-33 T 12-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily AMJ96_PB00284 017a8726ef5cf4ac864a302ecf984ed2 164 SUPERFAMILY SSF53146 22 148 1.07E-33 T 12-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily AMJ96_PB00284 017a8726ef5cf4ac864a302ecf984ed2 164 TIGRFAM TIGR02663 nifX: nitrogen fixation protein NifX 26 149 1.2E-52 T 12-10-2018 IPR013480 Nitrogen fixation protein NifX GO:0009399|GO:0051188|GO:0051540 AMJ96_PB00284 017a8726ef5cf4ac864a302ecf984ed2 164 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 36 132 2.4E-18 T 12-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis AMJ96_CH00716 551778561382e6ea5c3f910f8c49669d 445 Gene3D G3DSA:3.30.1330.60 277 445 2.0E-36 T 12-10-2018 IPR036737 OmpA-like domain superfamily AMJ96_CH00716 551778561382e6ea5c3f910f8c49669d 445 Pfam PF00691 OmpA family 356 423 2.1E-7 T 12-10-2018 IPR006665 OmpA-like domain AMJ96_CH00716 551778561382e6ea5c3f910f8c49669d 445 SUPERFAMILY SSF103088 336 442 3.79E-18 T 12-10-2018 IPR036737 OmpA-like domain superfamily AMJ96_CH00716 551778561382e6ea5c3f910f8c49669d 445 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 20 70 5.0E-18 T 12-10-2018 IPR025713 Motility protein B, N-terminal domain AMJ96_PD00092 159f8ca589859ba2b52d9ed16351da86 180 Pfam PF14232 Domain of unknown function (DUF4334) 116 170 6.1E-18 T 12-10-2018 IPR025568 Domain of unknown function DUF4334 AMJ96_PD00092 159f8ca589859ba2b52d9ed16351da86 180 Pfam PF14231 GXWXG protein 14 68 8.2E-21 T 12-10-2018 IPR025951 GXWXG domain AMJ96_CH03798 300daad0050c0d206aceb548d8efc06b 483 Gene3D G3DSA:3.40.50.720 16 434 4.9E-191 T 12-10-2018 AMJ96_CH03798 300daad0050c0d206aceb548d8efc06b 483 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 164 451 1.9E-27 T 12-10-2018 IPR032095 Saccharopine dehydrogenase, C-terminal Reactome: R-HSA-71064 AMJ96_CH03798 300daad0050c0d206aceb548d8efc06b 483 Gene3D G3DSA:3.30.360.30 166 479 4.9E-191 T 12-10-2018 IPR023181 Homospermidine synthase-like, C-terminal KEGG: 00960+2.5.1.44 AMJ96_CH03798 300daad0050c0d206aceb548d8efc06b 483 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 16 160 6.5E-36 T 12-10-2018 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 AMJ96_CH00351 27fd099775f4c279bbbe68b496ae865a 498 SUPERFAMILY SSF53474 32 476 6.51E-61 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH00351 27fd099775f4c279bbbe68b496ae865a 498 Gene3D G3DSA:3.40.50.1820 37 231 1.5E-19 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH00351 27fd099775f4c279bbbe68b496ae865a 498 Pfam PF00450 Serine carboxypeptidase 67 211 9.2E-16 T 12-10-2018 IPR001563 Peptidase S10, serine carboxypeptidase GO:0004185|GO:0006508 AMJ96_CH03703 226f295583cab7f3900f73419743024a 151 Gene3D G3DSA:3.30.420.270 74 143 2.6E-19 T 12-10-2018 AMJ96_CH03703 226f295583cab7f3900f73419743024a 151 Pfam PF02472 Biopolymer transport protein ExbD/TolR 26 147 1.8E-31 T 12-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 AMJ96_CH03703 226f295583cab7f3900f73419743024a 151 TIGRFAM TIGR02801 tolR: protein TolR 26 146 1.3E-39 T 12-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 AMJ96_CH04163 1b227b4e555b9a9b8f963c54207b5955 178 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 12-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMJ96_CH04163 1b227b4e555b9a9b8f963c54207b5955 178 Gene3D G3DSA:3.90.80.10 1 176 6.5E-74 T 12-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMJ96_CH04163 1b227b4e555b9a9b8f963c54207b5955 178 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 37.945 T 12-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMJ96_CH04163 1b227b4e555b9a9b8f963c54207b5955 178 Pfam PF00719 Inorganic pyrophosphatase 18 173 6.6E-54 T 12-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMJ96_CH04163 1b227b4e555b9a9b8f963c54207b5955 178 SUPERFAMILY SSF50324 4 175 6.93E-67 T 12-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AMJ96_PB00278 4744094b031dcb1e931b054725426846 114 Pfam PF05717 IS66 Orf2 like protein 7 103 6.1E-34 T 12-10-2018 IPR008878 Transposase IS66, Orf2 AMJ96_CH02778 c3e16a66ad2b259fe44b27cbfd15e236 133 SUPERFAMILY SSF46626 28 132 9.6E-35 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_CH02778 c3e16a66ad2b259fe44b27cbfd15e236 133 Gene3D G3DSA:1.10.760.10 14 131 2.1E-41 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_CH02778 c3e16a66ad2b259fe44b27cbfd15e236 133 Pfam PF00034 Cytochrome c 33 130 1.3E-8 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02778 c3e16a66ad2b259fe44b27cbfd15e236 133 PRINTS PR00604 Class IA and IB cytochrome C signature 53 68 2.8E-23 T 12-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02778 c3e16a66ad2b259fe44b27cbfd15e236 133 PRINTS PR00604 Class IA and IB cytochrome C signature 41 48 2.8E-23 T 12-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02778 c3e16a66ad2b259fe44b27cbfd15e236 133 PRINTS PR00604 Class IA and IB cytochrome C signature 69 79 2.8E-23 T 12-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02778 c3e16a66ad2b259fe44b27cbfd15e236 133 PRINTS PR00604 Class IA and IB cytochrome C signature 105 115 2.8E-23 T 12-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02778 c3e16a66ad2b259fe44b27cbfd15e236 133 PRINTS PR00604 Class IA and IB cytochrome C signature 86 102 2.8E-23 T 12-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH02778 c3e16a66ad2b259fe44b27cbfd15e236 133 PRINTS PR00604 Class IA and IB cytochrome C signature 122 130 2.8E-23 T 12-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00824 0f375022b8dcc546cc76b684d4048a1d 293 Pfam PF06078 Bacterial protein of unknown function (DUF937) 6 137 1.4E-25 T 12-10-2018 IPR009282 Protein of unknown function DUF937 AMJ96_PC00159 e3ac9717cf4f58e74dd2a6adf4bab7f8 286 SUPERFAMILY SSF51735 4 239 4.72E-41 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PC00159 e3ac9717cf4f58e74dd2a6adf4bab7f8 286 Gene3D G3DSA:3.40.50.720 4 199 2.5E-49 T 12-10-2018 AMJ96_PC00159 e3ac9717cf4f58e74dd2a6adf4bab7f8 286 Pfam PF05368 NmrA-like family 4 224 1.9E-16 T 12-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 AMJ96_PC00159 e3ac9717cf4f58e74dd2a6adf4bab7f8 286 Gene3D G3DSA:3.90.25.10 142 255 2.5E-49 T 12-10-2018 AMJ96_CH00491 b7b9273296aa402869b03024d193aacf 160 Pfam PF08592 Domain of unknown function (DUF1772) 21 155 3.5E-19 T 12-10-2018 AMJ96_CH03797 f21b519009556bca3822d044e3131993 94 SUPERFAMILY SSF54909 1 80 2.95E-14 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH03797 f21b519009556bca3822d044e3131993 94 Pfam PF03795 YCII-related domain 1 80 1.8E-9 T 12-10-2018 IPR005545 YCII-related AMJ96_CH00239 6c41e7be9c27dccbd3e6612c0c01a8ac 354 Gene3D G3DSA:3.90.25.10 189 353 1.6E-52 T 12-10-2018 AMJ96_CH00239 6c41e7be9c27dccbd3e6612c0c01a8ac 354 TIGRFAM TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase 6 349 1.1E-130 T 12-10-2018 IPR013445 CDP-glucose 4,6-dehydratase KEGG: 00520+4.2.1.45|MetaCyc: PWY-5833 AMJ96_CH00239 6c41e7be9c27dccbd3e6612c0c01a8ac 354 SUPERFAMILY SSF51735 6 338 7.24E-64 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00239 6c41e7be9c27dccbd3e6612c0c01a8ac 354 Gene3D G3DSA:3.40.50.720 3 188 5.1E-46 T 12-10-2018 AMJ96_CH00239 6c41e7be9c27dccbd3e6612c0c01a8ac 354 Pfam PF01370 NAD dependent epimerase/dehydratase family 12 231 2.2E-32 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_CH03593 9d20d68a724ca8a1235811611825ce75 281 SUPERFAMILY SSF161098 3 281 2.18E-62 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03593 9d20d68a724ca8a1235811611825ce75 281 Gene3D G3DSA:1.10.3720.10 1 271 6.1E-55 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03593 9d20d68a724ca8a1235811611825ce75 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 273 1.0E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03462 d288f065336cc231ea58bcb366eb39cf 123 Pfam PF04241 Protein of unknown function (DUF423) 25 103 1.4E-9 T 12-10-2018 IPR006696 Protein of unknown function DUF423 AMJ96_CH02226 605753358910c8c098513cc6d0cbb030 297 SMART SM00460 175 244 3.5E-18 T 12-10-2018 IPR002931 Transglutaminase-like AMJ96_CH02226 605753358910c8c098513cc6d0cbb030 297 Pfam PF01841 Transglutaminase-like superfamily 146 242 9.5E-19 T 12-10-2018 IPR002931 Transglutaminase-like AMJ96_CH02226 605753358910c8c098513cc6d0cbb030 297 SUPERFAMILY SSF54001 8 271 3.44E-39 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMJ96_CH02226 605753358910c8c098513cc6d0cbb030 297 Gene3D G3DSA:3.10.620.30 101 280 1.0E-32 T 12-10-2018 AMJ96_CH02226 605753358910c8c098513cc6d0cbb030 297 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 5 78 1.3E-19 T 12-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal AMJ96_PD00509 3c84db15ad50cd390a8e33999b79c595 451 SUPERFAMILY SSF53300 149 344 7.79E-5 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMJ96_PD00509 3c84db15ad50cd390a8e33999b79c595 451 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 25 70 3.4E-11 T 12-10-2018 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal AMJ96_CH01083 afb5f8b0872917ebc92a96aee8cdc4bb 257 Gene3D G3DSA:3.40.50.1820 32 256 9.5E-33 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01083 afb5f8b0872917ebc92a96aee8cdc4bb 257 Pfam PF12697 Alpha/beta hydrolase family 37 248 4.1E-16 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH01083 afb5f8b0872917ebc92a96aee8cdc4bb 257 SUPERFAMILY SSF53474 28 252 6.42E-27 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PC00346 893fb49891528d95ac34e634ac634686 292 Gene3D G3DSA:1.10.3720.10 59 269 8.0E-16 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00346 893fb49891528d95ac34e634ac634686 292 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 269 4.5E-21 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00346 893fb49891528d95ac34e634ac634686 292 SUPERFAMILY SSF161098 64 247 1.96E-18 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00346 893fb49891528d95ac34e634ac634686 292 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 2 46 5.8E-8 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMJ96_PC00227 46f9ead96ffd38375e60774c0b5c9ad3 160 SUPERFAMILY SSF69118 17 154 2.64E-17 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_PC00227 46f9ead96ffd38375e60774c0b5c9ad3 160 Gene3D G3DSA:1.20.1290.10 46 157 8.5E-12 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AMJ96_CH03485 e7a58a6b7700179be93b19066f0cd569 112 Gene3D G3DSA:3.60.15.10 18 104 2.2E-5 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH02630 86a0b39a0b5094de8c23ab12b6c71939 260 SUPERFAMILY SSF51735 1 251 5.56E-81 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02630 86a0b39a0b5094de8c23ab12b6c71939 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 1.7E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02630 86a0b39a0b5094de8c23ab12b6c71939 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 1.7E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02630 86a0b39a0b5094de8c23ab12b6c71939 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.7E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02630 86a0b39a0b5094de8c23ab12b6c71939 260 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH02630 86a0b39a0b5094de8c23ab12b6c71939 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 2.2E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02630 86a0b39a0b5094de8c23ab12b6c71939 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 2.2E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02630 86a0b39a0b5094de8c23ab12b6c71939 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 2.2E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02630 86a0b39a0b5094de8c23ab12b6c71939 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 2.2E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02630 86a0b39a0b5094de8c23ab12b6c71939 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.2E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02630 86a0b39a0b5094de8c23ab12b6c71939 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 2.2E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02630 86a0b39a0b5094de8c23ab12b6c71939 260 Gene3D G3DSA:3.40.50.720 2 259 5.1E-80 T 12-10-2018 AMJ96_CH02630 86a0b39a0b5094de8c23ab12b6c71939 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 251 8.8E-63 T 12-10-2018 AMJ96_CH03081 097dff99f25671ff13503686b5c4651d 432 Pfam PF13416 Bacterial extracellular solute-binding protein 63 341 1.3E-21 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH03081 097dff99f25671ff13503686b5c4651d 432 Gene3D G3DSA:3.40.190.10 181 345 6.1E-29 T 12-10-2018 AMJ96_CH03081 097dff99f25671ff13503686b5c4651d 432 SUPERFAMILY SSF53850 49 430 2.77E-50 T 12-10-2018 AMJ96_CH03081 097dff99f25671ff13503686b5c4651d 432 Gene3D G3DSA:3.40.190.10 56 180 4.6E-5 T 12-10-2018 AMJ96_CH02428 74b2d43381137c80962d4e84c467f9ba 354 PIRSF PIRSF001361 2 352 2.8E-154 T 12-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AMJ96_CH02428 74b2d43381137c80962d4e84c467f9ba 354 Gene3D G3DSA:3.20.20.70 3 350 2.2E-157 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH02428 74b2d43381137c80962d4e84c467f9ba 354 SUPERFAMILY SSF51569 7 348 3.77E-132 T 12-10-2018 AMJ96_CH02428 74b2d43381137c80962d4e84c467f9ba 354 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 348 1.9E-158 T 12-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AMJ96_CH02428 74b2d43381137c80962d4e84c467f9ba 354 Pfam PF00793 DAHP synthetase I family 41 338 2.8E-100 T 12-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AMJ96_CH01602 97cc4febbbe2e63407ed2f5a72825356 155 Gene3D G3DSA:3.30.230.10 27 155 6.7E-49 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AMJ96_CH01602 97cc4febbbe2e63407ed2f5a72825356 155 Pfam PF00380 Ribosomal protein S9/S16 35 155 2.8E-45 T 12-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01602 97cc4febbbe2e63407ed2f5a72825356 155 ProSitePatterns PS00360 Ribosomal protein S9 signature. 94 112 - T 12-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01602 97cc4febbbe2e63407ed2f5a72825356 155 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 26 155 32.421 T 12-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid AMJ96_CH01602 97cc4febbbe2e63407ed2f5a72825356 155 SUPERFAMILY SSF54211 30 155 8.72E-46 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AMJ96_PB00040 811a4250cea01b856e6423e21c24cf9a 151 SUPERFAMILY SSF50475 5 146 1.74E-19 T 12-10-2018 AMJ96_PB00040 811a4250cea01b856e6423e21c24cf9a 151 Gene3D G3DSA:2.30.110.10 4 148 2.7E-21 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMJ96_CH01802 844aa4553de446ddb8c84bda818e3eb4 172 SUPERFAMILY SSF53254 1 168 4.07E-22 T 12-10-2018 IPR029033 Histidine phosphatase superfamily AMJ96_CH01802 844aa4553de446ddb8c84bda818e3eb4 172 Gene3D G3DSA:3.40.50.1240 2 170 3.6E-42 T 12-10-2018 IPR029033 Histidine phosphatase superfamily AMJ96_CH01802 844aa4553de446ddb8c84bda818e3eb4 172 SMART SM00855 5 131 2.3E-5 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMJ96_CH01802 844aa4553de446ddb8c84bda818e3eb4 172 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 79 1.2E-7 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AMJ96_PD00029 50446f97bfaa2784e4da45000cdc1ce2 344 SUPERFAMILY SSF117892 57 180 2.09E-9 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily AMJ96_PD00029 50446f97bfaa2784e4da45000cdc1ce2 344 Gene3D G3DSA:3.30.479.30 56 180 4.6E-5 T 12-10-2018 AMJ96_PD00029 50446f97bfaa2784e4da45000cdc1ce2 344 Pfam PF01145 SPFH domain / Band 7 family 9 188 2.0E-12 T 12-10-2018 IPR001107 Band 7 domain AMJ96_CH03621 9999a0853f1ff5e4e7998e7922b050e2 479 Pfam PF00361 Proton-conducting membrane transporter 126 414 3.6E-78 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03621 9999a0853f1ff5e4e7998e7922b050e2 479 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 8 469 18.362 T 12-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 AMJ96_CH03621 9999a0853f1ff5e4e7998e7922b050e2 479 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 11 468 1.4E-155 T 12-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 AMJ96_PA00305 e655f287b28e4ddf61b618323175dcbb 434 Pfam PF03428 Replication protein C N-terminal domain 13 186 2.7E-77 T 12-10-2018 IPR005090 Replication protein C AMJ96_PA00305 e655f287b28e4ddf61b618323175dcbb 434 Pfam PF11800 Replication protein C C-terminal region 194 426 2.8E-82 T 12-10-2018 IPR021760 Replication protein-C C-terminal AMJ96_PA00305 e655f287b28e4ddf61b618323175dcbb 434 SUPERFAMILY SSF46785 92 173 1.63E-5 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PA00061 94605dd371f0e90504ee93fc79960536 377 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 187 374 2.4E-26 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PA00061 94605dd371f0e90504ee93fc79960536 377 Gene3D G3DSA:1.10.3720.10 158 373 9.8E-19 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00061 94605dd371f0e90504ee93fc79960536 377 SUPERFAMILY SSF161098 165 363 6.28E-21 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00061 94605dd371f0e90504ee93fc79960536 377 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 22 73 1.4E-13 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMJ96_CH01198 0fcf62c78a4a18b0289237029815661e 154 Gene3D G3DSA:3.90.280.10 1 153 6.6E-46 T 12-10-2018 IPR036610 PEBP-like superfamily AMJ96_CH01198 0fcf62c78a4a18b0289237029815661e 154 Pfam PF01161 Phosphatidylethanolamine-binding protein 16 151 5.2E-31 T 12-10-2018 IPR008914 Phosphatidylethanolamine-binding protein AMJ96_CH01198 0fcf62c78a4a18b0289237029815661e 154 SUPERFAMILY SSF49777 3 153 2.22E-39 T 12-10-2018 IPR036610 PEBP-like superfamily AMJ96_CH01198 0fcf62c78a4a18b0289237029815661e 154 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 21 151 2.4E-28 T 12-10-2018 IPR005247 YbhB/YbcL AMJ96_CH01156 9b4c4879c43949f677d129fb29810d6f 293 SUPERFAMILY SSF53335 63 244 5.38E-35 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH01156 9b4c4879c43949f677d129fb29810d6f 293 Gene3D G3DSA:3.40.50.150 64 265 2.9E-33 T 12-10-2018 AMJ96_CH01156 9b4c4879c43949f677d129fb29810d6f 293 Pfam PF13489 Methyltransferase domain 79 219 2.1E-15 T 12-10-2018 AMJ96_CH02370 b144b4dcd34691d9424936919a798243 274 PRINTS PR00377 Inositol monophosphatase superfamily signature 64 80 5.7E-17 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH02370 b144b4dcd34691d9424936919a798243 274 PRINTS PR00377 Inositol monophosphatase superfamily signature 219 243 5.7E-17 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH02370 b144b4dcd34691d9424936919a798243 274 PRINTS PR00377 Inositol monophosphatase superfamily signature 91 107 5.7E-17 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH02370 b144b4dcd34691d9424936919a798243 274 PRINTS PR00377 Inositol monophosphatase superfamily signature 42 62 5.7E-17 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH02370 b144b4dcd34691d9424936919a798243 274 SUPERFAMILY SSF56655 10 270 7.46E-57 T 12-10-2018 AMJ96_CH02370 b144b4dcd34691d9424936919a798243 274 Pfam PF00459 Inositol monophosphatase family 13 259 9.2E-37 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AMJ96_CH02370 b144b4dcd34691d9424936919a798243 274 Gene3D G3DSA:3.30.540.10 5 149 2.5E-34 T 12-10-2018 AMJ96_CH02370 b144b4dcd34691d9424936919a798243 274 Gene3D G3DSA:3.40.190.80 158 272 4.2E-13 T 12-10-2018 AMJ96_CH01375 15190ac746c90267a9673964ad7cb0df 148 Pfam PF10116 Protein required for attachment to host cells 11 146 9.0E-41 T 12-10-2018 IPR019291 Host attachment protein AMJ96_CH01594 5b513fefb50a7d16e2b541191bb46491 724 SUPERFAMILY SSF52540 560 686 6.64E-11 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01594 5b513fefb50a7d16e2b541191bb46491 724 Gene3D G3DSA:3.40.50.300 477 708 5.7E-13 T 12-10-2018 AMJ96_CH01594 5b513fefb50a7d16e2b541191bb46491 724 Pfam PF02706 Chain length determinant protein 11 105 1.6E-13 T 12-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 AMJ96_PC00432 42a2435e1917f4f44d0ef25e07d2fec0 93 Pfam PF04267 Sarcosine oxidase, delta subunit family 4 81 7.6E-34 T 12-10-2018 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 AMJ96_PC00432 42a2435e1917f4f44d0ef25e07d2fec0 93 TIGRFAM TIGR01374 soxD: sarcosine oxidase, delta subunit family 4 83 6.7E-35 T 12-10-2018 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 AMJ96_PC00432 42a2435e1917f4f44d0ef25e07d2fec0 93 Gene3D G3DSA:3.30.2270.10 2 90 4.7E-33 T 12-10-2018 IPR038561 Sarcosine oxidase subunit delta superfamily KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 AMJ96_CH02696 e2d6347255f760221278732e9fea5db8 265 SUPERFAMILY SSF53335 27 164 3.72E-38 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH02696 e2d6347255f760221278732e9fea5db8 265 Gene3D G3DSA:3.40.50.150 8 215 1.0E-35 T 12-10-2018 AMJ96_CH02696 e2d6347255f760221278732e9fea5db8 265 Pfam PF13649 Methyltransferase domain 51 147 2.7E-20 T 12-10-2018 AMJ96_CH01679 c090abf4a8de64ae2b1c131d397b483b 819 SUPERFAMILY SSF53955 43 256 4.22E-71 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily AMJ96_CH01679 c090abf4a8de64ae2b1c131d397b483b 819 Pfam PF00912 Transglycosylase 56 233 4.6E-59 T 12-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH01679 c090abf4a8de64ae2b1c131d397b483b 819 Gene3D G3DSA:1.10.3810.10 57 257 1.7E-73 T 12-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH01679 c090abf4a8de64ae2b1c131d397b483b 819 Pfam PF17092 Penicillin-binding protein OB-like domain 322 440 1.4E-21 T 12-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AMJ96_CH01679 c090abf4a8de64ae2b1c131d397b483b 819 Pfam PF00905 Penicillin binding protein transpeptidase domain 442 734 2.8E-39 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AMJ96_CH01679 c090abf4a8de64ae2b1c131d397b483b 819 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 66 738 4.9E-189 T 12-10-2018 AMJ96_CH01679 c090abf4a8de64ae2b1c131d397b483b 819 Gene3D G3DSA:3.40.710.10 258 333 9.0E-10 T 12-10-2018 AMJ96_CH01679 c090abf4a8de64ae2b1c131d397b483b 819 Gene3D G3DSA:3.40.710.10 420 780 1.9E-113 T 12-10-2018 AMJ96_CH01679 c090abf4a8de64ae2b1c131d397b483b 819 SUPERFAMILY SSF56601 215 790 2.91E-137 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMJ96_CH03004 2465d7553c29854e5114e18dcb71cc6b 557 SUPERFAMILY SSF52540 1 217 4.61E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03004 2465d7553c29854e5114e18dcb71cc6b 557 Pfam PF02463 RecF/RecN/SMC N terminal domain 14 502 3.7E-14 T 12-10-2018 IPR003395 RecF/RecN/SMC, N-terminal AMJ96_CH03004 2465d7553c29854e5114e18dcb71cc6b 557 Gene3D G3DSA:3.40.50.300 233 555 5.9E-46 T 12-10-2018 AMJ96_CH03004 2465d7553c29854e5114e18dcb71cc6b 557 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 553 9.8E-142 T 12-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 AMJ96_CH03004 2465d7553c29854e5114e18dcb71cc6b 557 PIRSF PIRSF003128 1 556 7.9E-155 T 12-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 AMJ96_CH03004 2465d7553c29854e5114e18dcb71cc6b 557 SUPERFAMILY SSF52540 2 507 1.83E-27 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03004 2465d7553c29854e5114e18dcb71cc6b 557 Gene3D G3DSA:3.40.50.300 1 206 1.6E-37 T 12-10-2018 AMJ96_CH02589 7a9d06b25c370970e70df2ff915d022e 546 Gene3D G3DSA:1.25.40.340 352 545 1.7E-58 T 12-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AMJ96_CH02589 7a9d06b25c370970e70df2ff915d022e 546 Pfam PF02733 Dak1 domain 36 321 8.4E-100 T 12-10-2018 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AMJ96_CH02589 7a9d06b25c370970e70df2ff915d022e 546 Pfam PF02734 DAK2 domain 383 538 1.1E-39 T 12-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AMJ96_CH02589 7a9d06b25c370970e70df2ff915d022e 546 Gene3D G3DSA:3.30.1180.20 185 332 3.8E-34 T 12-10-2018 AMJ96_CH02589 7a9d06b25c370970e70df2ff915d022e 546 Gene3D G3DSA:3.40.50.10440 12 183 1.5E-65 T 12-10-2018 AMJ96_CH02589 7a9d06b25c370970e70df2ff915d022e 546 SUPERFAMILY SSF101473 358 539 2.75E-48 T 12-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AMJ96_CH02589 7a9d06b25c370970e70df2ff915d022e 546 SUPERFAMILY SSF82549 1 325 6.28E-106 T 12-10-2018 AMJ96_CH02589 7a9d06b25c370970e70df2ff915d022e 546 SMART SM01120 382 544 1.4E-53 T 12-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AMJ96_PD00313 269dde4ce4b8fa0af4b85c4ba3ce831a 250 SUPERFAMILY SSF51735 1 213 2.19E-28 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00313 269dde4ce4b8fa0af4b85c4ba3ce831a 250 Pfam PF13460 NAD(P)H-binding 7 173 2.0E-10 T 12-10-2018 IPR016040 NAD(P)-binding domain AMJ96_PD00313 269dde4ce4b8fa0af4b85c4ba3ce831a 250 Gene3D G3DSA:3.40.50.720 2 246 1.1E-27 T 12-10-2018 AMJ96_PD00280 25ccd038a9fe8755a8c71d7241b5f64f 330 PIRSF PIRSF001439 1 330 5.9E-74 T 12-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 AMJ96_PD00280 25ccd038a9fe8755a8c71d7241b5f64f 330 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 4 319 1.3E-110 T 12-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 AMJ96_PD00280 25ccd038a9fe8755a8c71d7241b5f64f 330 Gene3D G3DSA:3.40.50.720 129 303 1.4E-89 T 12-10-2018 AMJ96_PD00280 25ccd038a9fe8755a8c71d7241b5f64f 330 SUPERFAMILY SSF51735 3 329 2.98E-91 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00280 25ccd038a9fe8755a8c71d7241b5f64f 330 TIGRFAM TIGR02992 ectoine_eutC: ectoine utilization protein EutC 5 329 3.6E-176 T 12-10-2018 IPR014334 Ectoine utilization protein EutC AMJ96_PD00280 25ccd038a9fe8755a8c71d7241b5f64f 330 Gene3D G3DSA:3.30.1780.10 7 325 1.4E-89 T 12-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 AMJ96_CH02638 48a9877f3eb6ae963e2f6583148d3504 86 Pfam PF14026 Protein of unknown function (DUF4242) 4 76 8.4E-18 T 12-10-2018 IPR025336 Protein of unknown function DUF4242 AMJ96_CH02638 48a9877f3eb6ae963e2f6583148d3504 86 Gene3D G3DSA:3.30.70.3090 17 79 6.1E-7 T 12-10-2018 AMJ96_CH02532 0990d0cd5f58e5998eecbe7b96b27ef9 179 SUPERFAMILY SSF52540 3 166 1.29E-14 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02532 0990d0cd5f58e5998eecbe7b96b27ef9 179 Pfam PF13521 AAA domain 5 166 1.8E-41 T 12-10-2018 IPR038727 NadR/Ttd14, AAA domain AMJ96_CH02532 0990d0cd5f58e5998eecbe7b96b27ef9 179 Gene3D G3DSA:3.40.50.300 2 167 4.2E-8 T 12-10-2018 AMJ96_PC00166 97368530ad32b6bc80bd3562becc009f 291 Pfam PF00498 FHA domain 33 96 2.2E-8 T 12-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMJ96_PC00166 97368530ad32b6bc80bd3562becc009f 291 SUPERFAMILY SSF49879 16 104 3.83E-16 T 12-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 AMJ96_PC00166 97368530ad32b6bc80bd3562becc009f 291 Gene3D G3DSA:2.60.200.20 15 127 7.6E-16 T 12-10-2018 AMJ96_PC00166 97368530ad32b6bc80bd3562becc009f 291 SMART SM00240 31 81 5.9E-7 T 12-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 AMJ96_PC00057 59b0d2bf663f29173d284c32be4ee207 359 Pfam PF01944 Stage II sporulation protein M 138 318 4.1E-28 T 12-10-2018 IPR002798 Stage II sporulation protein M-like AMJ96_CH00332 52fcc81d7ca961276e3fa4eaabf4fa42 301 Pfam PF01904 Protein of unknown function DUF72 24 287 8.9E-66 T 12-10-2018 IPR002763 Protein of unknown function DUF72 AMJ96_CH00332 52fcc81d7ca961276e3fa4eaabf4fa42 301 SUPERFAMILY SSF117396 7 289 4.05E-77 T 12-10-2018 IPR036520 UPF0759 superfamily AMJ96_CH00332 52fcc81d7ca961276e3fa4eaabf4fa42 301 Gene3D G3DSA:3.20.20.410 1 158 9.9E-41 T 12-10-2018 IPR036520 UPF0759 superfamily AMJ96_CH00252 85d19dc291d63c323636db4fb8f286d8 97 TIGRFAM TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain 7 78 3.5E-24 T 12-10-2018 IPR011893 Selenoprotein, Rdx-type AMJ96_CH00252 85d19dc291d63c323636db4fb8f286d8 97 Pfam PF10262 Rdx family 6 79 3.0E-34 T 12-10-2018 IPR011893 Selenoprotein, Rdx-type AMJ96_CH00252 85d19dc291d63c323636db4fb8f286d8 97 SUPERFAMILY SSF52833 5 88 3.35E-30 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH00252 85d19dc291d63c323636db4fb8f286d8 97 Gene3D G3DSA:3.40.30.10 1 97 5.9E-43 T 12-10-2018 AMJ96_PD00198 f28196af8a91004c4dbf22e0d407f044 65 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 4 65 7.8E-20 T 12-10-2018 IPR010035 ThiS, thiamine-biosynthesis AMJ96_PD00198 f28196af8a91004c4dbf22e0d407f044 65 SUPERFAMILY SSF54285 3 64 1.06E-16 T 12-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AMJ96_PD00198 f28196af8a91004c4dbf22e0d407f044 65 Gene3D G3DSA:3.10.20.30 1 65 4.0E-19 T 12-10-2018 IPR012675 Beta-grasp domain superfamily AMJ96_PD00198 f28196af8a91004c4dbf22e0d407f044 65 Pfam PF02597 ThiS family 5 65 3.0E-13 T 12-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 AMJ96_CH02872 412d5efae2c257ed140e5bb138970517 354 SUPERFAMILY SSF53807 42 351 8.83E-78 T 12-10-2018 AMJ96_CH02872 412d5efae2c257ed140e5bb138970517 354 Pfam PF01297 Zinc-uptake complex component A periplasmic 44 350 7.7E-67 T 12-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 AMJ96_CH02872 412d5efae2c257ed140e5bb138970517 354 Gene3D G3DSA:3.40.50.1980 43 161 3.9E-34 T 12-10-2018 AMJ96_CH02872 412d5efae2c257ed140e5bb138970517 354 Gene3D G3DSA:3.40.50.1980 162 240 3.2E-21 T 12-10-2018 AMJ96_CH02872 412d5efae2c257ed140e5bb138970517 354 Gene3D G3DSA:3.40.50.1980 241 353 4.3E-39 T 12-10-2018 AMJ96_CH03274 73f043396ccc5152812d3667de3ef1d2 124 Pfam PF03795 YCII-related domain 1 114 5.7E-23 T 12-10-2018 IPR005545 YCII-related AMJ96_CH03274 73f043396ccc5152812d3667de3ef1d2 124 Gene3D G3DSA:3.30.70.1060 1 117 2.0E-30 T 12-10-2018 AMJ96_CH03274 73f043396ccc5152812d3667de3ef1d2 124 SUPERFAMILY SSF54909 1 117 4.02E-31 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH02249 77cd7caf48a349c75a6cd62503d0b9b0 399 Pfam PF01594 AI-2E family transporter 34 364 3.2E-37 T 12-10-2018 IPR002549 Transmembrane protein TqsA-like AMJ96_CH04150 0c6979843f79bf82ab5915b68ce24116 143 SUPERFAMILY SSF88697 1 141 1.91E-54 T 12-10-2018 IPR015947 PUA-like superfamily AMJ96_CH04150 0c6979843f79bf82ab5915b68ce24116 143 Pfam PF01878 EVE domain 2 135 6.5E-42 T 12-10-2018 IPR002740 EVE domain AMJ96_CH04150 0c6979843f79bf82ab5915b68ce24116 143 Gene3D G3DSA:3.10.590.10 1 143 2.5E-57 T 12-10-2018 AMJ96_CH02702 4b4dc73cbc406e5034e8b7dc35291f6e 128 Gene3D G3DSA:3.10.129.10 2 128 9.3E-36 T 12-10-2018 AMJ96_CH02702 4b4dc73cbc406e5034e8b7dc35291f6e 128 SUPERFAMILY SSF54637 8 127 2.54E-33 T 12-10-2018 IPR029069 HotDog domain superfamily AMJ96_CH02702 4b4dc73cbc406e5034e8b7dc35291f6e 128 Pfam PF03061 Thioesterase superfamily 26 96 1.2E-12 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AMJ96_CH01400 e68b6b0a1e45014b0f28e9d014f44c8b 306 Gene3D G3DSA:2.60.120.620 19 240 4.2E-11 T 12-10-2018 AMJ96_CH01400 e68b6b0a1e45014b0f28e9d014f44c8b 306 SUPERFAMILY SSF51197 23 200 1.01E-15 T 12-10-2018 AMJ96_CH02896 6ba58bcf35458953704d61ef0326017b 83 SUPERFAMILY SSF47598 1 45 5.45E-6 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMJ96_CH02896 6ba58bcf35458953704d61ef0326017b 83 Gene3D G3DSA:1.10.8.1250 10 80 1.2E-5 T 12-10-2018 IPR038296 Antitoxin ParD superfamily AMJ96_PD00172 9c42ff649e815f4111ea5399d78639e1 367 Gene3D G3DSA:3.40.50.720 1 351 2.7E-84 T 12-10-2018 AMJ96_PD00172 9c42ff649e815f4111ea5399d78639e1 367 SUPERFAMILY SSF51735 1 348 2.21E-85 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00172 9c42ff649e815f4111ea5399d78639e1 367 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 275 9.4E-50 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_PD00172 9c42ff649e815f4111ea5399d78639e1 367 PRINTS PR01713 Nucleotide sugar epimerase signature 246 261 5.4E-5 T 12-10-2018 AMJ96_PD00172 9c42ff649e815f4111ea5399d78639e1 367 PRINTS PR01713 Nucleotide sugar epimerase signature 269 284 5.4E-5 T 12-10-2018 AMJ96_PD00172 9c42ff649e815f4111ea5399d78639e1 367 PRINTS PR01713 Nucleotide sugar epimerase signature 310 327 5.4E-5 T 12-10-2018 AMJ96_CH01139 552bbcd9796a9337ac0ff09baacb012b 154 Gene3D G3DSA:1.10.530.40 2 153 9.7E-45 T 12-10-2018 AMJ96_CH01139 552bbcd9796a9337ac0ff09baacb012b 154 SUPERFAMILY SSF53955 10 153 4.76E-45 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily AMJ96_CH01139 552bbcd9796a9337ac0ff09baacb012b 154 Pfam PF00959 Phage lysozyme 40 145 4.3E-16 T 12-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 AMJ96_PC00310 e256ef254fe6c5bba6c1cbe3566eb866 140 Pfam PF01850 PIN domain 3 129 2.1E-15 T 12-10-2018 IPR002716 PIN domain AMJ96_PC00310 e256ef254fe6c5bba6c1cbe3566eb866 140 SUPERFAMILY SSF88723 1 130 5.05E-20 T 12-10-2018 IPR029060 PIN-like domain superfamily AMJ96_PC00310 e256ef254fe6c5bba6c1cbe3566eb866 140 Gene3D G3DSA:3.40.50.1010 1 130 3.2E-19 T 12-10-2018 AMJ96_PC00310 e256ef254fe6c5bba6c1cbe3566eb866 140 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 137 11.157 T 12-10-2018 IPR022907 VapC family GO:0004540 AMJ96_CH02265 69fed8d5de1895c5009a3030eda29477 214 Pfam PF07310 PAS domain 11 146 2.2E-40 T 12-10-2018 IPR009922 Protein of unknown function DUF1457 AMJ96_CH02265 69fed8d5de1895c5009a3030eda29477 214 PIRSF PIRSF031878 3 194 2.7E-52 T 12-10-2018 IPR009922 Protein of unknown function DUF1457 AMJ96_CH03121 90c81b578f1d54f8f6bbffce69e2514c 151 SUPERFAMILY SSF89095 2 150 1.62E-39 T 12-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 AMJ96_CH03121 90c81b578f1d54f8f6bbffce69e2514c 151 Pfam PF09424 Yqey-like protein 4 149 1.4E-51 T 12-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 AMJ96_CH03121 90c81b578f1d54f8f6bbffce69e2514c 151 Gene3D G3DSA:1.10.1510.10 1 93 1.4E-25 T 12-10-2018 AMJ96_CH03121 90c81b578f1d54f8f6bbffce69e2514c 151 Gene3D G3DSA:1.10.10.410 94 150 6.4E-17 T 12-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal AMJ96_CH01819 63c1aded361a6a26c2c518522b6b22c0 133 Gene3D G3DSA:2.40.10.220 7 93 6.6E-6 T 12-10-2018 AMJ96_CH01819 63c1aded361a6a26c2c518522b6b22c0 133 Pfam PF07238 PilZ domain 10 97 4.2E-8 T 12-10-2018 IPR009875 PilZ domain GO:0035438 AMJ96_CH01819 63c1aded361a6a26c2c518522b6b22c0 133 SUPERFAMILY SSF141371 10 85 2.55E-8 T 12-10-2018 AMJ96_CH04180 20b9c22fe65389a8deed36bc538f5694 130 Pfam PF06803 Protein of unknown function (DUF1232) 63 97 7.8E-13 T 12-10-2018 IPR010652 Domain of unknown function DUF1232 MetaCyc: PWY-7511 AMJ96_CH04180 20b9c22fe65389a8deed36bc538f5694 130 PIRSF PIRSF031804 1 126 8.8E-46 T 12-10-2018 IPR016983 Uncharacterised conserved protein UCP031804 AMJ96_PD00608 9e71646663a05f9f7eaf9200a6963e70 239 Pfam PF03737 Aldolase/RraA 17 182 9.6E-31 T 12-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AMJ96_PD00608 9e71646663a05f9f7eaf9200a6963e70 239 SUPERFAMILY SSF89562 15 193 5.62E-40 T 12-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily AMJ96_PD00608 9e71646663a05f9f7eaf9200a6963e70 239 Gene3D G3DSA:3.50.30.100 2 204 4.3E-49 T 12-10-2018 AMJ96_CH01833 c1bab5304700de2f64fdf51aa5fc495e 114 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 7 105 1.2E-32 T 12-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 AMJ96_CH01833 c1bab5304700de2f64fdf51aa5fc495e 114 SUPERFAMILY SSF50022 7 107 4.58E-34 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMJ96_CH01833 c1bab5304700de2f64fdf51aa5fc495e 114 Pfam PF13806 Rieske-like [2Fe-2S] domain 7 104 2.2E-17 T 12-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 AMJ96_CH01833 c1bab5304700de2f64fdf51aa5fc495e 114 Gene3D G3DSA:2.102.10.10 6 113 3.6E-27 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 AMJ96_PD00616 454124ea55b878bde1a3e8f4d70cc21c 512 Gene3D G3DSA:3.40.190.10 190 488 1.4E-88 T 12-10-2018 AMJ96_PD00616 454124ea55b878bde1a3e8f4d70cc21c 512 PIRSF PIRSF002741 3 503 3.8E-64 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AMJ96_PD00616 454124ea55b878bde1a3e8f4d70cc21c 512 Gene3D G3DSA:3.90.76.10 40 189 1.4E-88 T 12-10-2018 AMJ96_PD00616 454124ea55b878bde1a3e8f4d70cc21c 512 SUPERFAMILY SSF53850 29 503 1.16E-91 T 12-10-2018 AMJ96_PD00616 454124ea55b878bde1a3e8f4d70cc21c 512 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 75 397 3.9E-66 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain AMJ96_PD00616 454124ea55b878bde1a3e8f4d70cc21c 512 Gene3D G3DSA:3.10.105.10 262 485 1.4E-88 T 12-10-2018 AMJ96_PC00207 ad089947f6b1674e8a717b04a0840970 385 Pfam PF01757 Acyltransferase family 50 369 2.7E-24 T 12-10-2018 IPR002656 Acyltransferase 3 GO:0016747 AMJ96_CH02446 6e31de842a1fcdb67a592adb97506b8e 355 SUPERFAMILY SSF55073 181 340 1.57E-42 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02446 6e31de842a1fcdb67a592adb97506b8e 355 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 173 337 1.7E-42 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH02446 6e31de842a1fcdb67a592adb97506b8e 355 Pfam PF00990 Diguanylate cyclase, GGDEF domain 176 333 5.0E-43 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH02446 6e31de842a1fcdb67a592adb97506b8e 355 Gene3D G3DSA:3.30.70.270 174 351 6.5E-53 T 12-10-2018 AMJ96_CH02446 6e31de842a1fcdb67a592adb97506b8e 355 SMART SM00267 165 338 6.9E-55 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PC00080 552d88603261d7c93d7458d8aa6b8743 233 Pfam PF05988 Bacterial protein of unknown function (DUF899) 22 229 2.6E-67 T 12-10-2018 IPR010296 Protein of unknown function DUF899, thioredoxin-like AMJ96_PC00080 552d88603261d7c93d7458d8aa6b8743 233 SUPERFAMILY SSF52833 63 229 8.57E-12 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_PC00080 552d88603261d7c93d7458d8aa6b8743 233 Gene3D G3DSA:3.40.30.10 64 199 1.2E-7 T 12-10-2018 AMJ96_PB00136 3d9436e9f2a209a8dde49f5351973bce 339 Pfam PF02653 Branched-chain amino acid transport system / permease component 54 323 2.0E-31 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_PB00100 94a67558f1a2c0805391d8b6d46a11aa 187 Pfam PF06635 Nodulation protein NolV 11 179 1.7E-16 T 12-10-2018 IPR010586 Nodulation NolV GO:0009877 AMJ96_PB00100 94a67558f1a2c0805391d8b6d46a11aa 187 TIGRFAM TIGR02499 HrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family 10 171 4.3E-41 T 12-10-2018 IPR012842 Type III secretion system HrpE/YscL AMJ96_CH01088 5693ab4832a708ae8a4fff977cf6f080 208 Gene3D G3DSA:3.40.50.150 1 208 7.4E-37 T 12-10-2018 AMJ96_CH01088 5693ab4832a708ae8a4fff977cf6f080 208 Pfam PF13489 Methyltransferase domain 27 184 3.1E-8 T 12-10-2018 AMJ96_CH01088 5693ab4832a708ae8a4fff977cf6f080 208 SUPERFAMILY SSF53335 4 193 5.3E-23 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH02593 6e082fd726c40db46dcd717125efbc12 317 SUPERFAMILY SSF161098 19 316 2.06E-63 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02593 6e082fd726c40db46dcd717125efbc12 317 Gene3D G3DSA:1.10.3720.10 15 304 3.3E-58 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02593 6e082fd726c40db46dcd717125efbc12 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 126 304 9.1E-22 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03886 11d1644260a705dd13502ad4c8e514d2 231 Pfam PF13302 Acetyltransferase (GNAT) domain 62 163 2.5E-10 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH03886 11d1644260a705dd13502ad4c8e514d2 231 Gene3D G3DSA:3.40.630.30 4 224 3.8E-54 T 12-10-2018 AMJ96_CH03886 11d1644260a705dd13502ad4c8e514d2 231 SUPERFAMILY SSF55729 15 188 8.89E-32 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH00509 c5c3c45aae1e5b5d840636c60eff0694 324 Pfam PF02653 Branched-chain amino acid transport system / permease component 48 313 3.7E-45 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_PC00028 d67c5b51513a8713ef89bb6f8c933306 252 Pfam PF02104 SURF1 family 28 232 3.1E-42 T 12-10-2018 IPR002994 Surfeit locus 1/Shy1 GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH03158 63f78e9d53e19b84cc86cbd8cca8e506 793 Gene3D G3DSA:3.40.50.410 352 526 6.3E-36 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMJ96_CH03158 63f78e9d53e19b84cc86cbd8cca8e506 793 SUPERFAMILY SSF53300 353 518 1.32E-30 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMJ96_CH03158 63f78e9d53e19b84cc86cbd8cca8e506 793 TIGRFAM TIGR03788 marine_srt_targ: marine proteobacterial sortase target protein 83 779 3.8E-282 T 12-10-2018 IPR022440 Conserved hypothetical protein CHP03788 AMJ96_CH03158 63f78e9d53e19b84cc86cbd8cca8e506 793 Pfam PF08487 Vault protein inter-alpha-trypsin domain 85 192 2.7E-33 T 12-10-2018 IPR013694 VIT domain AMJ96_CH03158 63f78e9d53e19b84cc86cbd8cca8e506 793 Pfam PF13768 von Willebrand factor type A domain 354 506 5.5E-24 T 12-10-2018 IPR002035 von Willebrand factor, type A AMJ96_CH03158 63f78e9d53e19b84cc86cbd8cca8e506 793 SMART SM00609 77 194 5.5E-6 T 12-10-2018 IPR013694 VIT domain AMJ96_CH03158 63f78e9d53e19b84cc86cbd8cca8e506 793 SMART SM00327 352 527 1.1E-21 T 12-10-2018 IPR002035 von Willebrand factor, type A AMJ96_CH01137 ccfae5dc7178a76518dc556fc035dbf7 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 132 165 1.6E-9 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH01137 ccfae5dc7178a76518dc556fc035dbf7 186 SUPERFAMILY SSF51161 52 185 1.18E-36 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily AMJ96_CH01137 ccfae5dc7178a76518dc556fc035dbf7 186 Gene3D G3DSA:2.160.10.10 12 186 3.8E-44 T 12-10-2018 AMJ96_CH01137 ccfae5dc7178a76518dc556fc035dbf7 186 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 140 168 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMJ96_CH01456 bcf3a4f8240bba0591cfd0438318abba 281 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 72 94 - T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMJ96_CH01456 bcf3a4f8240bba0591cfd0438318abba 281 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 36 201 5.7E-33 T 12-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 AMJ96_CH01456 bcf3a4f8240bba0591cfd0438318abba 281 Pfam PF01066 CDP-alcohol phosphatidyltransferase 31 94 7.6E-14 T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMJ96_CH01456 bcf3a4f8240bba0591cfd0438318abba 281 Gene3D G3DSA:1.20.120.1760 20 203 8.3E-15 T 12-10-2018 AMJ96_CH01456 bcf3a4f8240bba0591cfd0438318abba 281 Pfam PF08009 CDP-alcohol phosphatidyltransferase 2 217 252 2.7E-10 T 12-10-2018 IPR012616 CDP-alcohol phosphatidyltransferase, C-terminal AMJ96_CH00124 e1f29ed22d627d9bdc45fde42b14e693 543 Gene3D G3DSA:1.20.1250.20 8 397 2.1E-38 T 12-10-2018 AMJ96_CH00124 e1f29ed22d627d9bdc45fde42b14e693 543 Pfam PF05977 Transmembrane secretion effector 6 525 1.0E-219 T 12-10-2018 IPR010290 Transmembrane secretion effector AMJ96_CH00124 e1f29ed22d627d9bdc45fde42b14e693 543 SUPERFAMILY SSF103473 17 398 2.49E-48 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_PD00545 e886708cca0765b7393d5a9cbceb2052 472 PIRSF PIRSF006603 11 459 1.1E-64 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMJ96_PD00545 e886708cca0765b7393d5a9cbceb2052 472 TIGRFAM TIGR00797 matE: MATE efflux family protein 36 419 2.7E-44 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMJ96_PD00545 e886708cca0765b7393d5a9cbceb2052 472 Pfam PF01554 MatE 255 409 1.0E-14 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMJ96_PD00545 e886708cca0765b7393d5a9cbceb2052 472 Pfam PF01554 MatE 36 194 5.2E-20 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMJ96_CH02767 e13a3df32124754726437eb602b1e975 406 Pfam PF12704 MacB-like periplasmic core domain 28 238 5.0E-12 T 12-10-2018 IPR025857 MacB-like periplasmic core domain AMJ96_PD00130 a0c658b44f5c56749cda7571a789268b 173 Pfam PF06186 Protein of unknown function (DUF992) 38 170 1.8E-50 T 12-10-2018 IPR009333 Protein of unknown function DUF992 AMJ96_CH00331 5749951e6afad28147926ac830fc1c5d 199 Gene3D G3DSA:3.40.50.150 23 188 2.5E-14 T 12-10-2018 AMJ96_CH00331 5749951e6afad28147926ac830fc1c5d 199 SUPERFAMILY SSF53335 20 138 1.82E-21 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH00331 5749951e6afad28147926ac830fc1c5d 199 Pfam PF13649 Methyltransferase domain 58 150 1.4E-7 T 12-10-2018 AMJ96_CH01012 99115e58513f250fcee95b3f6a75bdb4 376 Pfam PF01555 DNA methylase 40 261 1.2E-58 T 12-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 AMJ96_CH01012 99115e58513f250fcee95b3f6a75bdb4 376 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 246 266 7.3E-41 T 12-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AMJ96_CH01012 99115e58513f250fcee95b3f6a75bdb4 376 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 39 53 7.3E-41 T 12-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AMJ96_CH01012 99115e58513f250fcee95b3f6a75bdb4 376 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 88 108 7.3E-41 T 12-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AMJ96_CH01012 99115e58513f250fcee95b3f6a75bdb4 376 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 204 221 7.3E-41 T 12-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AMJ96_CH01012 99115e58513f250fcee95b3f6a75bdb4 376 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 223 241 7.3E-41 T 12-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AMJ96_CH01012 99115e58513f250fcee95b3f6a75bdb4 376 Gene3D G3DSA:3.40.50.150 19 269 1.1E-71 T 12-10-2018 AMJ96_CH01012 99115e58513f250fcee95b3f6a75bdb4 376 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 43 49 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMJ96_CH01012 99115e58513f250fcee95b3f6a75bdb4 376 SUPERFAMILY SSF53335 18 267 9.99E-74 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH02082 e78ee26de7db95be72db1dec7de0257c 275 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 110 240 8.6E-17 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH02082 e78ee26de7db95be72db1dec7de0257c 275 SMART SM00044 11 251 1.6E-5 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH02082 e78ee26de7db95be72db1dec7de0257c 275 Gene3D G3DSA:3.30.70.1230 104 270 6.4E-49 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02082 e78ee26de7db95be72db1dec7de0257c 275 Pfam PF14026 Protein of unknown function (DUF4242) 4 78 3.5E-21 T 12-10-2018 IPR025336 Protein of unknown function DUF4242 AMJ96_CH02082 e78ee26de7db95be72db1dec7de0257c 275 SUPERFAMILY SSF55073 98 270 5.97E-43 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02082 e78ee26de7db95be72db1dec7de0257c 275 Gene3D G3DSA:3.30.70.3090 1 82 2.8E-28 T 12-10-2018 AMJ96_CH03255 a19c6373d02fe4f389b64c1da3223ca8 305 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 27 79 2.4E-12 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AMJ96_CH03255 a19c6373d02fe4f389b64c1da3223ca8 305 Gene3D G3DSA:1.10.3720.10 94 300 1.5E-20 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03255 a19c6373d02fe4f389b64c1da3223ca8 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 122 303 1.2E-25 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03255 a19c6373d02fe4f389b64c1da3223ca8 305 SUPERFAMILY SSF161098 99 288 2.35E-26 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02131 9c0053aacd3cb58a886759222ff53520 124 SUPERFAMILY SSF51316 3 121 9.94E-31 T 12-10-2018 IPR011057 Mss4-like superfamily AMJ96_CH02131 9c0053aacd3cb58a886759222ff53520 124 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 26 104 1.1E-13 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMJ96_CH02131 9c0053aacd3cb58a886759222ff53520 124 Gene3D G3DSA:3.90.1590.10 2 78 1.8E-7 T 12-10-2018 AMJ96_CH00311 b6722118b0646db91331dcbfc05fde1b 212 SUPERFAMILY SSF53167 29 201 9.82E-30 T 12-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 AMJ96_CH00311 b6722118b0646db91331dcbfc05fde1b 212 Gene3D G3DSA:3.40.50.1580 3 210 2.9E-51 T 12-10-2018 AMJ96_CH00311 b6722118b0646db91331dcbfc05fde1b 212 Pfam PF01048 Phosphorylase superfamily 137 176 2.3E-6 T 12-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AMJ96_CH00311 b6722118b0646db91331dcbfc05fde1b 212 TIGRFAM TIGR01705 MTA/SAH-nuc-hyp: putative 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 210 4.8E-104 T 12-10-2018 IPR010050 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative AMJ96_CH02699 c4f6473f19aa1b36f2c2e0b468ea822f 115 SUPERFAMILY SSF74924 4 64 3.67E-6 T 12-10-2018 IPR036859 CAP Gly-rich domain superfamily AMJ96_CH02066 3ed51354a8b893c70dfe983b232fb75c 361 Gene3D G3DSA:2.120.10.30 108 222 2.0E-10 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMJ96_CH02066 3ed51354a8b893c70dfe983b232fb75c 361 Gene3D G3DSA:2.120.10.30 223 358 2.5E-12 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMJ96_CH02066 3ed51354a8b893c70dfe983b232fb75c 361 Gene3D G3DSA:2.120.10.30 1 107 1.6E-11 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMJ96_CH02066 3ed51354a8b893c70dfe983b232fb75c 361 Pfam PF07676 WD40-like Beta Propeller Repeat 23 59 0.089 T 12-10-2018 IPR011659 WD40-like Beta Propeller AMJ96_CH02066 3ed51354a8b893c70dfe983b232fb75c 361 Pfam PF07676 WD40-like Beta Propeller Repeat 80 110 4.1E-5 T 12-10-2018 IPR011659 WD40-like Beta Propeller AMJ96_CH02066 3ed51354a8b893c70dfe983b232fb75c 361 Pfam PF07676 WD40-like Beta Propeller Repeat 259 292 4.6E-4 T 12-10-2018 IPR011659 WD40-like Beta Propeller AMJ96_CH02066 3ed51354a8b893c70dfe983b232fb75c 361 Pfam PF07676 WD40-like Beta Propeller Repeat 202 234 0.029 T 12-10-2018 IPR011659 WD40-like Beta Propeller AMJ96_CH02066 3ed51354a8b893c70dfe983b232fb75c 361 Pfam PF07676 WD40-like Beta Propeller Repeat 316 339 0.0041 T 12-10-2018 IPR011659 WD40-like Beta Propeller AMJ96_CH02066 3ed51354a8b893c70dfe983b232fb75c 361 SUPERFAMILY SSF82171 22 348 8.37E-23 T 12-10-2018 AMJ96_PD00087 8cc753351d82ce45960be1b6d5182d81 432 Gene3D G3DSA:3.30.70.270 237 418 1.2E-54 T 12-10-2018 AMJ96_PD00087 8cc753351d82ce45960be1b6d5182d81 432 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 247 415 8.1E-47 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PD00087 8cc753351d82ce45960be1b6d5182d81 432 SMART SM00267 240 416 2.0E-62 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PD00087 8cc753351d82ce45960be1b6d5182d81 432 SUPERFAMILY SSF55073 256 417 3.14E-44 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_PD00087 8cc753351d82ce45960be1b6d5182d81 432 Pfam PF00990 Diguanylate cyclase, GGDEF domain 251 412 7.6E-46 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH01392 07e4eca903e8eddcb624e16755e931d6 341 SUPERFAMILY SSF56935 57 341 7.5E-17 T 12-10-2018 AMJ96_CH01392 07e4eca903e8eddcb624e16755e931d6 341 Pfam PF02530 Porin subfamily 24 325 3.7E-92 T 12-10-2018 IPR003684 Porin, alpha proteobacteria type GO:0015288|GO:0016020|GO:0055085 AMJ96_CH01392 07e4eca903e8eddcb624e16755e931d6 341 Gene3D G3DSA:2.40.160.10 65 336 8.1E-8 T 12-10-2018 IPR023614 Porin domain superfamily AMJ96_CH00226 4eb3695343b72fbf13c25451ad8b34ef 348 Gene3D G3DSA:3.60.70.12 18 347 1.0E-92 T 12-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMJ96_CH00226 4eb3695343b72fbf13c25451ad8b34ef 348 SUPERFAMILY SSF56266 17 331 1.7E-66 T 12-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 AMJ96_CH00226 4eb3695343b72fbf13c25451ad8b34ef 348 Pfam PF03576 Peptidase family S58 23 333 2.1E-53 T 12-10-2018 IPR005321 Peptidase S58, DmpA AMJ96_PD00109 9e0841bf415d5bb1411a6b27576dfa40 324 Pfam PF00294 pfkB family carbohydrate kinase 20 307 1.0E-37 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB AMJ96_PD00109 9e0841bf415d5bb1411a6b27576dfa40 324 SUPERFAMILY SSF53613 19 315 9.51E-56 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_PD00109 9e0841bf415d5bb1411a6b27576dfa40 324 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 259 272 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AMJ96_PD00109 9e0841bf415d5bb1411a6b27576dfa40 324 Gene3D G3DSA:3.40.1190.20 18 323 3.3E-92 T 12-10-2018 IPR029056 Ribokinase-like AMJ96_CH00211 0ce356301a21c5610439c4ee502b590e 498 PRINTS PR00811 Bacterial general secretion pathway protein D signature 409 427 4.0E-8 T 12-10-2018 IPR001775 GspD/PilQ family AMJ96_CH00211 0ce356301a21c5610439c4ee502b590e 498 PRINTS PR00811 Bacterial general secretion pathway protein D signature 432 446 4.0E-8 T 12-10-2018 IPR001775 GspD/PilQ family AMJ96_CH00211 0ce356301a21c5610439c4ee502b590e 498 PRINTS PR00811 Bacterial general secretion pathway protein D signature 221 231 4.0E-8 T 12-10-2018 IPR001775 GspD/PilQ family AMJ96_CH00211 0ce356301a21c5610439c4ee502b590e 498 PRINTS PR00811 Bacterial general secretion pathway protein D signature 287 311 4.0E-8 T 12-10-2018 IPR001775 GspD/PilQ family AMJ96_CH00211 0ce356301a21c5610439c4ee502b590e 498 Pfam PF04972 BON domain 129 181 3.5E-8 T 12-10-2018 IPR007055 BON domain AMJ96_CH00211 0ce356301a21c5610439c4ee502b590e 498 Pfam PF13629 Pilus formation protein N terminal region 56 125 1.1E-19 T 12-10-2018 IPR032789 Pilus formation protein, N-terminal AMJ96_CH00211 0ce356301a21c5610439c4ee502b590e 498 Pfam PF00263 Bacterial type II and III secretion system protein 291 445 9.4E-36 T 12-10-2018 IPR004846 Type II/III secretion system GO:0009306 AMJ96_PB00132 170003d15c1422fcb97e463af949c261 298 Pfam PF00561 alpha/beta hydrolase fold 56 163 3.2E-10 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PB00132 170003d15c1422fcb97e463af949c261 298 SUPERFAMILY SSF53474 20 286 2.34E-37 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PB00132 170003d15c1422fcb97e463af949c261 298 Gene3D G3DSA:3.40.50.1820 14 296 6.4E-34 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PB00132 170003d15c1422fcb97e463af949c261 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 125 138 9.9E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PB00132 170003d15c1422fcb97e463af949c261 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 59 74 9.9E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PB00132 170003d15c1422fcb97e463af949c261 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 111 124 9.9E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PC00251 dc247e00b1cf1cf0cb4c9f01909f906d 179 SUPERFAMILY SSF47175 25 178 1.47E-21 T 12-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 AMJ96_PC00251 dc247e00b1cf1cf0cb4c9f01909f906d 179 Pfam PF01322 Cytochrome C' 25 123 1.7E-12 T 12-10-2018 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 AMJ96_CH00286 027a74029abc8de949f3fe844616521a 335 Pfam PF00535 Glycosyl transferase family 2 13 165 4.0E-15 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_CH00286 027a74029abc8de949f3fe844616521a 335 Gene3D G3DSA:3.90.550.10 1 237 8.5E-43 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00286 027a74029abc8de949f3fe844616521a 335 SUPERFAMILY SSF53448 7 252 1.13E-31 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03254 37b559f2157e03f1a154789aa3c0922b 307 SUPERFAMILY SSF161098 89 292 7.85E-17 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03254 37b559f2157e03f1a154789aa3c0922b 307 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 305 7.8E-36 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03254 37b559f2157e03f1a154789aa3c0922b 307 Gene3D G3DSA:1.10.3720.10 85 299 3.6E-17 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01027 1843f38bae5346d2566b10af0a4264cd 301 Pfam PF07386 Protein of unknown function (DUF1499) 233 290 3.4E-8 T 12-10-2018 IPR010865 Protein of unknown function DUF1499 AMJ96_CH02707 2f996a22ab259080d0e102ffc5d31f59 293 Pfam PF05368 NmrA-like family 7 231 1.9E-58 T 12-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 AMJ96_CH02707 2f996a22ab259080d0e102ffc5d31f59 293 SUPERFAMILY SSF51735 4 257 2.59E-64 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02707 2f996a22ab259080d0e102ffc5d31f59 293 Gene3D G3DSA:3.90.25.10 148 255 7.0E-73 T 12-10-2018 AMJ96_CH02707 2f996a22ab259080d0e102ffc5d31f59 293 Gene3D G3DSA:3.40.50.720 7 270 7.0E-73 T 12-10-2018 AMJ96_CH03317 09cd2603b33235b93dac059031ab619e 579 SUPERFAMILY SSF52016 381 566 1.41E-56 T 12-10-2018 AMJ96_CH03317 09cd2603b33235b93dac059031ab619e 579 Gene3D G3DSA:3.50.30.80 381 535 1.5E-48 T 12-10-2018 AMJ96_CH03317 09cd2603b33235b93dac059031ab619e 579 SUPERFAMILY SSF143975 6 380 8.63E-126 T 12-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMJ96_CH03317 09cd2603b33235b93dac059031ab619e 579 Pfam PF00920 Dehydratase family 44 561 1.6E-179 T 12-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AMJ96_PD00613 57179064d4317f34d34bf9cebfbaf5d1 295 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AMJ96_PD00613 57179064d4317f34d34bf9cebfbaf5d1 295 Gene3D G3DSA:3.40.50.300 1 291 9.9E-78 T 12-10-2018 AMJ96_PD00613 57179064d4317f34d34bf9cebfbaf5d1 295 Pfam PF00005 ABC transporter 25 181 8.7E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00613 57179064d4317f34d34bf9cebfbaf5d1 295 SUPERFAMILY SSF52540 4 253 8.05E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00613 57179064d4317f34d34bf9cebfbaf5d1 295 SMART SM00382 33 231 2.2E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_CH03456 bb25f156501cb87cb2d1cf1ba365a88b 131 Pfam PF06823 Protein of unknown function (DUF1236) 69 131 5.5E-21 T 12-10-2018 IPR009642 Protein of unknown function DUF1236 AMJ96_CH02071 504521007ac17312f4943fe350f5de57 203 Pfam PF03734 L,D-transpeptidase catalytic domain 74 201 1.1E-15 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMJ96_CH02071 504521007ac17312f4943fe350f5de57 203 SUPERFAMILY SSF141523 69 202 3.66E-30 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH02071 504521007ac17312f4943fe350f5de57 203 Gene3D G3DSA:2.40.440.10 48 203 5.5E-42 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_PA00151 f941287f7b28486a75cff54524113772 99 SUPERFAMILY SSF117916 5 95 7.19E-26 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMJ96_PA00151 f941287f7b28486a75cff54524113772 99 Gene3D G3DSA:3.30.300.130 2 96 6.6E-29 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily AMJ96_PA00151 f941287f7b28486a75cff54524113772 99 Pfam PF01883 Iron-sulfur cluster assembly protein 9 80 7.1E-18 T 12-10-2018 IPR002744 MIP18 family-like AMJ96_CH01716 343b332c5607f297e57e0eb0fee90a15 206 Gene3D G3DSA:3.40.1370.10 1 206 1.3E-72 T 12-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01716 343b332c5607f297e57e0eb0fee90a15 206 Pfam PF00573 Ribosomal protein L4/L1 family 16 204 2.1E-62 T 12-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 AMJ96_CH01716 343b332c5607f297e57e0eb0fee90a15 206 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 8 206 30.868 T 12-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01716 343b332c5607f297e57e0eb0fee90a15 206 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 16 203 5.1E-69 T 12-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH01716 343b332c5607f297e57e0eb0fee90a15 206 SUPERFAMILY SSF52166 1 205 4.97E-71 T 12-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 AMJ96_PD00334 76289341fc71957393bea614401483fa 284 Pfam PF00005 ABC transporter 24 181 7.9E-22 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PD00334 76289341fc71957393bea614401483fa 284 SUPERFAMILY SSF52540 4 245 1.2E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PD00334 76289341fc71957393bea614401483fa 284 SMART SM00382 30 238 9.5E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PD00334 76289341fc71957393bea614401483fa 284 Gene3D G3DSA:3.40.50.300 1 280 2.3E-74 T 12-10-2018 AMJ96_CH01589 13dcc3336f3e843dd8a3d06dbee1a825 277 Gene3D G3DSA:1.10.3720.10 4 269 3.5E-56 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01589 13dcc3336f3e843dd8a3d06dbee1a825 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 269 4.4E-20 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH01589 13dcc3336f3e843dd8a3d06dbee1a825 277 SUPERFAMILY SSF161098 12 277 9.81E-66 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01267 d15182bee7c194101a1d3175138d7467 174 Pfam PF08002 Protein of unknown function (DUF1697) 1 132 4.6E-42 T 12-10-2018 IPR012545 Protein of unknown function DUF1697 AMJ96_CH01267 d15182bee7c194101a1d3175138d7467 174 PIRSF PIRSF008502 1 170 5.2E-42 T 12-10-2018 IPR012545 Protein of unknown function DUF1697 AMJ96_CH01267 d15182bee7c194101a1d3175138d7467 174 SUPERFAMILY SSF160379 1 167 7.98E-51 T 12-10-2018 AMJ96_CH01267 d15182bee7c194101a1d3175138d7467 174 Gene3D G3DSA:3.30.70.1280 1 88 2.6E-27 T 12-10-2018 AMJ96_PB00264 5288aae3a928f8dd92e934f03f276b9e 126 Gene3D G3DSA:3.10.450.50 15 114 9.1E-10 T 12-10-2018 AMJ96_PB00264 5288aae3a928f8dd92e934f03f276b9e 126 SUPERFAMILY SSF54427 18 107 3.92E-14 T 12-10-2018 IPR032710 NTF2-like domain superfamily AMJ96_PD00574 9b1ccda3658928587d78ee4a8c3647ef 307 Pfam PF00892 EamA-like transporter family 1 108 1.7E-7 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_PD00574 9b1ccda3658928587d78ee4a8c3647ef 307 Pfam PF00892 EamA-like transporter family 126 263 3.0E-12 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_PD00574 9b1ccda3658928587d78ee4a8c3647ef 307 SUPERFAMILY SSF103481 10 111 3.79E-8 T 12-10-2018 AMJ96_PD00574 9b1ccda3658928587d78ee4a8c3647ef 307 SUPERFAMILY SSF103481 182 265 1.23E-9 T 12-10-2018 AMJ96_CH04224 e3f78e147248f982bd6e264bd137a979 404 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 3 389 4.8E-123 T 12-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 AMJ96_CH04224 e3f78e147248f982bd6e264bd137a979 404 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 155 170 4.3E-17 T 12-10-2018 AMJ96_CH04224 e3f78e147248f982bd6e264bd137a979 404 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 294 310 4.3E-17 T 12-10-2018 AMJ96_CH04224 e3f78e147248f982bd6e264bd137a979 404 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 279 294 4.3E-17 T 12-10-2018 AMJ96_CH04224 e3f78e147248f982bd6e264bd137a979 404 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 4.3E-17 T 12-10-2018 AMJ96_CH04224 e3f78e147248f982bd6e264bd137a979 404 Gene3D G3DSA:3.30.9.50 75 268 7.5E-93 T 12-10-2018 AMJ96_CH04224 e3f78e147248f982bd6e264bd137a979 404 Pfam PF01494 FAD binding domain 3 316 7.5E-29 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 AMJ96_CH04224 e3f78e147248f982bd6e264bd137a979 404 SUPERFAMILY SSF51905 2 383 6.48E-58 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH04224 e3f78e147248f982bd6e264bd137a979 404 Gene3D G3DSA:3.50.50.60 3 337 7.5E-93 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH00936 5c781afeb07b52df19df146aa98d4498 307 Gene3D G3DSA:2.60.120.10 33 287 1.6E-71 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH00936 5c781afeb07b52df19df146aa98d4498 307 Pfam PF05726 Pirin C-terminal cupin domain 192 292 1.5E-29 T 12-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 AMJ96_CH00936 5c781afeb07b52df19df146aa98d4498 307 Gene3D G3DSA:2.60.120.10 161 261 1.6E-71 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH00936 5c781afeb07b52df19df146aa98d4498 307 PIRSF PIRSF006232 16 300 5.6E-89 T 12-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 AMJ96_CH00936 5c781afeb07b52df19df146aa98d4498 307 Pfam PF02678 Pirin 34 139 5.3E-33 T 12-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 AMJ96_CH00936 5c781afeb07b52df19df146aa98d4498 307 SUPERFAMILY SSF51182 22 303 8.47E-84 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH00393 bcba11f7d1bd8717f416f62f6bec84c4 350 Pfam PF02562 PhoH-like protein 133 336 1.6E-91 T 12-10-2018 IPR003714 PhoH-like protein GO:0005524 AMJ96_CH00393 bcba11f7d1bd8717f416f62f6bec84c4 350 SUPERFAMILY SSF52540 132 311 3.81E-38 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00393 bcba11f7d1bd8717f416f62f6bec84c4 350 Gene3D G3DSA:3.40.50.300 129 336 4.1E-73 T 12-10-2018 AMJ96_PD00548 f4d92f3f891430303a66d9d8d349059f 163 Pfam PF00583 Acetyltransferase (GNAT) family 39 130 1.1E-7 T 12-10-2018 IPR000182 GNAT domain AMJ96_PD00548 f4d92f3f891430303a66d9d8d349059f 163 SUPERFAMILY SSF55729 19 154 5.85E-19 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_PD00548 f4d92f3f891430303a66d9d8d349059f 163 Gene3D G3DSA:3.40.630.30 22 158 6.1E-20 T 12-10-2018 AMJ96_CH04367 7b4bdbfb991b0de01db3b6d00cf17303 74 Pfam PF07896 Protein of unknown function (DUF1674) 35 74 5.2E-13 T 12-10-2018 IPR012875 Protein of unknown function DUF1674 AMJ96_CH00235 e5abf150207a5eb8291bdf0268559a6d 382 Gene3D G3DSA:3.90.1150.10 247 366 1.1E-15 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH00235 e5abf150207a5eb8291bdf0268559a6d 382 SUPERFAMILY SSF53383 4 365 2.45E-100 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH00235 e5abf150207a5eb8291bdf0268559a6d 382 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 13 363 1.5E-117 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMJ96_CH00235 e5abf150207a5eb8291bdf0268559a6d 382 PIRSF PIRSF000390 1 370 1.5E-119 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMJ96_CH00235 e5abf150207a5eb8291bdf0268559a6d 382 Gene3D G3DSA:3.40.640.10 1 246 3.9E-91 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_CH01900 ccb9351e0333cf3bf75f3cd750bd4c2c 140 SUPERFAMILY SSF54427 6 132 2.0E-20 T 12-10-2018 IPR032710 NTF2-like domain superfamily AMJ96_CH01900 ccb9351e0333cf3bf75f3cd750bd4c2c 140 Gene3D G3DSA:3.10.450.50 1 139 1.8E-20 T 12-10-2018 AMJ96_CH01900 ccb9351e0333cf3bf75f3cd750bd4c2c 140 Pfam PF12680 SnoaL-like domain 11 117 3.0E-6 T 12-10-2018 IPR037401 SnoaL-like domain AMJ96_CH01370 aa1e41f7fa8ce96729a49dd356c83b4e 112 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 67 111 5.6E-10 T 12-10-2018 IPR019223 Domain of unknown function DUF2147 AMJ96_CH04310 4d6c493f54ae20e635191a7d4847bf8b 443 Gene3D G3DSA:1.50.10.140 3 434 6.2E-139 T 12-10-2018 AMJ96_CH04310 4d6c493f54ae20e635191a7d4847bf8b 443 PIRSF PIRSF028431 1 440 2.3E-153 T 12-10-2018 IPR016883 Uncharacterised conserved protein UCP028431 AMJ96_CH04310 4d6c493f54ae20e635191a7d4847bf8b 443 Pfam PF10091 Putative glucoamylase 182 414 2.0E-79 T 12-10-2018 IPR019282 Domain of unknown function DUF2329 AMJ96_CH03167 826b7e6ce28e2a1ca8c7bb3080193fa0 163 SMART SM00347 46 146 3.1E-21 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH03167 826b7e6ce28e2a1ca8c7bb3080193fa0 163 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 86 5.1E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH03167 826b7e6ce28e2a1ca8c7bb3080193fa0 163 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 102 5.1E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH03167 826b7e6ce28e2a1ca8c7bb3080193fa0 163 PRINTS PR00598 Bacterial regulatory protein MarR family signature 106 122 5.1E-6 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH03167 826b7e6ce28e2a1ca8c7bb3080193fa0 163 ProSitePatterns PS01117 MarR-type HTH domain signature. 85 119 - T 12-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AMJ96_CH03167 826b7e6ce28e2a1ca8c7bb3080193fa0 163 Gene3D G3DSA:1.10.10.10 14 161 1.7E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03167 826b7e6ce28e2a1ca8c7bb3080193fa0 163 Pfam PF12802 MarR family 51 110 2.6E-15 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_CH03167 826b7e6ce28e2a1ca8c7bb3080193fa0 163 SUPERFAMILY SSF46785 18 159 8.44E-29 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02284 7646428f6662cc0596af371ebbe9674f 306 SUPERFAMILY SSF103481 217 297 1.11E-9 T 12-10-2018 AMJ96_CH02284 7646428f6662cc0596af371ebbe9674f 306 SUPERFAMILY SSF103481 49 147 9.68E-16 T 12-10-2018 AMJ96_CH02284 7646428f6662cc0596af371ebbe9674f 306 Pfam PF00892 EamA-like transporter family 156 293 1.6E-7 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH02284 7646428f6662cc0596af371ebbe9674f 306 Pfam PF00892 EamA-like transporter family 11 144 3.7E-13 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_CH03938 d1f1ac5ca62e63e384d195dda03aa6a1 436 Gene3D G3DSA:3.40.190.10 137 422 2.7E-163 T 12-10-2018 AMJ96_CH03938 d1f1ac5ca62e63e384d195dda03aa6a1 436 Pfam PF01547 Bacterial extracellular solute-binding protein 38 326 7.6E-58 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH03938 d1f1ac5ca62e63e384d195dda03aa6a1 436 Gene3D G3DSA:3.40.190.10 40 393 2.7E-163 T 12-10-2018 AMJ96_CH03938 d1f1ac5ca62e63e384d195dda03aa6a1 436 SUPERFAMILY SSF53850 24 408 1.7E-85 T 12-10-2018 AMJ96_PD00180 baf086fb186f8d37d7e4123128a05c4e 304 SUPERFAMILY SSF46626 28 166 9.84E-24 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_PD00180 baf086fb186f8d37d7e4123128a05c4e 304 SUPERFAMILY SSF46626 190 301 4.85E-14 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_PD00180 baf086fb186f8d37d7e4123128a05c4e 304 Pfam PF00034 Cytochrome c 46 147 2.9E-4 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00180 baf086fb186f8d37d7e4123128a05c4e 304 Gene3D G3DSA:1.10.760.10 3 154 2.2E-10 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_CH04130 b85ce50a9b15defdf7ae52f4a820a5fc 166 Pfam PF01292 Prokaryotic cytochrome b561 9 165 2.1E-19 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AMJ96_CH04130 b85ce50a9b15defdf7ae52f4a820a5fc 166 SUPERFAMILY SSF81342 5 166 1.26E-20 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AMJ96_PB00037 b0f3bfd92d7f4989f59ba578bd6bfe8c 364 Pfam PF12281 Nucleotidyltransferase 105 318 5.1E-80 T 12-10-2018 IPR022550 Nucleotidyltransferase 8 AMJ96_PB00037 b0f3bfd92d7f4989f59ba578bd6bfe8c 364 PIRSF PIRSF031854 1 348 5.2E-170 T 12-10-2018 IPR022550 Nucleotidyltransferase 8 AMJ96_CH00336 cb9141f35f3aae0851691ea3dd7df0b2 162 Gene3D G3DSA:2.60.120.10 24 137 5.8E-28 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH00336 cb9141f35f3aae0851691ea3dd7df0b2 162 SUPERFAMILY SSF51182 33 137 2.9E-20 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH00336 cb9141f35f3aae0851691ea3dd7df0b2 162 Pfam PF05899 Protein of unknown function (DUF861) 60 131 3.8E-20 T 12-10-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 AMJ96_CH03559 12814716e4c07c53fb12de86dedaa73e 432 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 12-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMJ96_CH03559 12814716e4c07c53fb12de86dedaa73e 432 Gene3D G3DSA:3.90.170.10 268 432 4.4E-67 T 12-10-2018 AMJ96_CH03559 12814716e4c07c53fb12de86dedaa73e 432 SUPERFAMILY SSF52540 1 426 4.25E-169 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03559 12814716e4c07c53fb12de86dedaa73e 432 Gene3D G3DSA:1.10.300.10 102 202 1.2E-93 T 12-10-2018 AMJ96_CH03559 12814716e4c07c53fb12de86dedaa73e 432 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 432 209.658 T 12-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMJ96_CH03559 12814716e4c07c53fb12de86dedaa73e 432 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 135 146 - T 12-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMJ96_CH03559 12814716e4c07c53fb12de86dedaa73e 432 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 5 430 1.9E-159 T 12-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMJ96_CH03559 12814716e4c07c53fb12de86dedaa73e 432 SMART SM00788 3 425 4.8E-284 T 12-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMJ96_CH03559 12814716e4c07c53fb12de86dedaa73e 432 Gene3D G3DSA:3.40.440.10 5 259 1.2E-93 T 12-10-2018 AMJ96_CH03559 12814716e4c07c53fb12de86dedaa73e 432 Pfam PF00709 Adenylosuccinate synthetase 4 424 1.3E-171 T 12-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AMJ96_CH03050 ec4662441ca5ea5a12cc2243bf7ee86c 114 SUPERFAMILY SSF55298 10 113 6.91E-27 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMJ96_CH03050 ec4662441ca5ea5a12cc2243bf7ee86c 114 Pfam PF01042 Endoribonuclease L-PSP 5 112 1.4E-20 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 AMJ96_CH03050 ec4662441ca5ea5a12cc2243bf7ee86c 114 Gene3D G3DSA:3.30.1330.40 1 114 1.2E-33 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMJ96_CH01790 6e0a6a29e089f3e173e15ab10c1f5f31 153 SUPERFAMILY SSF46785 7 85 1.81E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01790 6e0a6a29e089f3e173e15ab10c1f5f31 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 3.7E-6 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH01790 6e0a6a29e089f3e173e15ab10c1f5f31 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 3.7E-6 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH01790 6e0a6a29e089f3e173e15ab10c1f5f31 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 3.7E-6 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 AMJ96_CH01790 6e0a6a29e089f3e173e15ab10c1f5f31 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 8 51 2.7E-12 T 12-10-2018 AMJ96_CH01790 6e0a6a29e089f3e173e15ab10c1f5f31 153 Gene3D G3DSA:3.30.70.920 57 141 2.2E-24 T 12-10-2018 AMJ96_CH01790 6e0a6a29e089f3e173e15ab10c1f5f31 153 SMART SM00344 9 113 7.5E-31 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AMJ96_CH01790 6e0a6a29e089f3e173e15ab10c1f5f31 153 SUPERFAMILY SSF54909 65 153 3.75E-20 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH01790 6e0a6a29e089f3e173e15ab10c1f5f31 153 Pfam PF01037 Lrp/AsnC ligand binding domain 71 144 5.0E-24 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AMJ96_CH01790 6e0a6a29e089f3e173e15ab10c1f5f31 153 Gene3D G3DSA:1.10.10.10 6 56 1.9E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH03348 2aa7af40b67e5aa3f22c15d5b0eb98df 199 Gene3D G3DSA:2.30.110.10 11 199 3.9E-33 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMJ96_CH03348 2aa7af40b67e5aa3f22c15d5b0eb98df 199 SUPERFAMILY SSF50475 23 199 6.92E-27 T 12-10-2018 AMJ96_CH03348 2aa7af40b67e5aa3f22c15d5b0eb98df 199 Pfam PF12766 Pyridoxamine 5'-phosphate oxidase 27 104 4.6E-12 T 12-10-2018 IPR024624 Pyridoxamine 5'-phosphate oxidase, Alr4036 family, FMN-binding domain GO:0010181 AMJ96_CH03214 36901f30e888842bed1ae0f9e53e17c8 690 Gene3D G3DSA:3.40.50.880 323 511 4.1E-31 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH03214 36901f30e888842bed1ae0f9e53e17c8 690 SUPERFAMILY SSF52317 258 512 3.66E-55 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH01095 20f5d9f84960c449f3343e9df0ebe8b7 284 Gene3D G3DSA:2.60.120.200 44 281 5.1E-25 T 12-10-2018 AMJ96_CH01095 20f5d9f84960c449f3343e9df0ebe8b7 284 Pfam PF14099 Polysaccharide lyase 49 272 1.1E-31 T 12-10-2018 IPR025975 Polysaccharide lyase MetaCyc: PWY-7644 AMJ96_CH00859 9b962ccda4ed946d9bf1a42b23d9ee07 293 Pfam PF01734 Patatin-like phospholipase 23 195 6.9E-24 T 12-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AMJ96_CH00859 9b962ccda4ed946d9bf1a42b23d9ee07 293 SUPERFAMILY SSF52151 18 266 4.71E-40 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase AMJ96_CH00859 9b962ccda4ed946d9bf1a42b23d9ee07 293 Gene3D G3DSA:3.40.1090.10 94 244 2.1E-13 T 12-10-2018 AMJ96_CH00859 9b962ccda4ed946d9bf1a42b23d9ee07 293 Gene3D G3DSA:3.40.1090.20 17 89 1.8E-10 T 12-10-2018 AMJ96_CH03594 d971af772024ccfc6ffd31c12d3acb49 340 SUPERFAMILY SSF53697 26 337 5.01E-27 T 12-10-2018 AMJ96_CH03594 d971af772024ccfc6ffd31c12d3acb49 340 Gene3D G3DSA:3.40.50.10490 184 323 2.2E-9 T 12-10-2018 AMJ96_CH03594 d971af772024ccfc6ffd31c12d3acb49 340 Gene3D G3DSA:3.40.50.10490 19 171 3.7E-15 T 12-10-2018 AMJ96_CH03594 d971af772024ccfc6ffd31c12d3acb49 340 Pfam PF01380 SIS domain 203 299 6.5E-8 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMJ96_PD00662 8b81ddc0617052ad86fb799b0f950d68 87 Pfam PF05406 WGR domain 8 80 3.1E-18 T 12-10-2018 IPR008893 WGR domain AMJ96_PD00662 8b81ddc0617052ad86fb799b0f950d68 87 Gene3D G3DSA:2.20.140.10 30 84 1.8E-6 T 12-10-2018 IPR036930 WGR domain superfamily AMJ96_PD00662 8b81ddc0617052ad86fb799b0f950d68 87 SUPERFAMILY SSF142921 5 79 3.01E-18 T 12-10-2018 IPR036930 WGR domain superfamily AMJ96_PD00662 8b81ddc0617052ad86fb799b0f950d68 87 SMART SM00773 6 84 2.9E-17 T 12-10-2018 IPR008893 WGR domain AMJ96_CH03792 4738e34a5e428b6ea59c5172e693e87d 618 SUPERFAMILY SSF55166 86 208 4.32E-31 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMJ96_CH03792 4738e34a5e428b6ea59c5172e693e87d 618 Gene3D G3DSA:3.30.1380.10 85 209 1.1E-6 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMJ96_CH03792 4738e34a5e428b6ea59c5172e693e87d 618 Pfam PF05951 Bacterial protein of unknown function (DUF882) 51 204 1.0E-73 T 12-10-2018 IPR010275 Protein of unknown function DUF882 AMJ96_PC00375 00d7ee9d6e07d63f6f6b3ca5634106a7 293 Gene3D G3DSA:1.10.3720.10 47 289 2.1E-62 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00375 00d7ee9d6e07d63f6f6b3ca5634106a7 293 SUPERFAMILY SSF161098 51 279 4.84E-54 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00375 00d7ee9d6e07d63f6f6b3ca5634106a7 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 280 9.9E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02481 887034c70f159b6de7e3e5b957135565 257 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 52 65 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site AMJ96_CH02481 887034c70f159b6de7e3e5b957135565 257 SMART SM00062 29 253 7.3E-70 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH02481 887034c70f159b6de7e3e5b957135565 257 Gene3D G3DSA:3.40.190.10 32 249 2.7E-75 T 12-10-2018 AMJ96_CH02481 887034c70f159b6de7e3e5b957135565 257 SMART SM00079 29 252 3.1E-5 T 12-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AMJ96_CH02481 887034c70f159b6de7e3e5b957135565 257 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 31 251 8.7E-68 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH02481 887034c70f159b6de7e3e5b957135565 257 Gene3D G3DSA:3.40.190.10 115 211 2.7E-75 T 12-10-2018 AMJ96_CH02481 887034c70f159b6de7e3e5b957135565 257 SUPERFAMILY SSF53850 8 254 2.66E-76 T 12-10-2018 AMJ96_PD00254 a12443ea0d613ec35f57c2aab48eb125 424 Gene3D G3DSA:3.40.190.10 46 346 5.0E-72 T 12-10-2018 AMJ96_PD00254 a12443ea0d613ec35f57c2aab48eb125 424 Pfam PF01547 Bacterial extracellular solute-binding protein 40 322 1.5E-35 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PD00254 a12443ea0d613ec35f57c2aab48eb125 424 SUPERFAMILY SSF53850 24 415 1.81E-66 T 12-10-2018 AMJ96_PD00254 a12443ea0d613ec35f57c2aab48eb125 424 Gene3D G3DSA:3.40.190.10 140 365 5.0E-72 T 12-10-2018 AMJ96_PD00012 63bb75bfea2e736b49a2e3228f66e345 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 2.1E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00012 63bb75bfea2e736b49a2e3228f66e345 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 2.1E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00012 63bb75bfea2e736b49a2e3228f66e345 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 2.1E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00012 63bb75bfea2e736b49a2e3228f66e345 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 194 214 2.1E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00012 63bb75bfea2e736b49a2e3228f66e345 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 2.1E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00012 63bb75bfea2e736b49a2e3228f66e345 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 2.1E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00012 63bb75bfea2e736b49a2e3228f66e345 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 4.6E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00012 63bb75bfea2e736b49a2e3228f66e345 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 4.6E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00012 63bb75bfea2e736b49a2e3228f66e345 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 4.6E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PD00012 63bb75bfea2e736b49a2e3228f66e345 234 SUPERFAMILY SSF51735 5 230 3.31E-64 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00012 63bb75bfea2e736b49a2e3228f66e345 234 Gene3D G3DSA:3.40.50.720 1 234 3.4E-70 T 12-10-2018 AMJ96_PD00012 63bb75bfea2e736b49a2e3228f66e345 234 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 230 2.4E-50 T 12-10-2018 AMJ96_PD00012 63bb75bfea2e736b49a2e3228f66e345 234 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 155 0.0099 T 12-10-2018 AMJ96_CH03869 94be70d9b3854fba7ecde30127683063 259 Gene3D G3DSA:3.40.50.880 1 250 6.0E-63 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH03869 94be70d9b3854fba7ecde30127683063 259 Pfam PF07722 Peptidase C26 4 222 2.5E-72 T 12-10-2018 IPR011697 Peptidase C26 GO:0016787 Reactome: R-HSA-6798695 AMJ96_CH03869 94be70d9b3854fba7ecde30127683063 259 SUPERFAMILY SSF52317 25 244 7.8E-38 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like AMJ96_CH00723 42a2f66f70103a6d22ca5da7d4456d9b 348 Gene3D G3DSA:1.20.1330.10 66 171 1.5E-5 T 12-10-2018 AMJ96_CH00723 42a2f66f70103a6d22ca5da7d4456d9b 348 Pfam PF00669 Bacterial flagellin N-terminal helical region 6 142 4.3E-34 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMJ96_CH00723 42a2f66f70103a6d22ca5da7d4456d9b 348 SUPERFAMILY SSF64518 5 348 6.02E-21 T 12-10-2018 AMJ96_CH00723 42a2f66f70103a6d22ca5da7d4456d9b 348 Pfam PF00700 Bacterial flagellin C-terminal helical region 266 348 6.8E-25 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMJ96_CH03305 2d97ede402004c87567129fecadace78 315 SMART SM01130 5 304 5.9E-62 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH03305 2d97ede402004c87567129fecadace78 315 Pfam PF00701 Dihydrodipicolinate synthetase family 6 298 8.9E-38 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH03305 2d97ede402004c87567129fecadace78 315 Gene3D G3DSA:3.20.20.70 3 305 6.5E-62 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH03305 2d97ede402004c87567129fecadace78 315 SUPERFAMILY SSF51569 2 304 2.41E-63 T 12-10-2018 AMJ96_CH03305 2d97ede402004c87567129fecadace78 315 PIRSF PIRSF001365 1 314 1.3E-66 T 12-10-2018 IPR002220 DapA-like GO:0016829 AMJ96_CH01193 b1493d2a76baa9f851bfd52c125ec166 163 SUPERFAMILY SSF55729 9 149 2.75E-22 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH01193 b1493d2a76baa9f851bfd52c125ec166 163 Gene3D G3DSA:3.40.630.30 5 159 2.3E-25 T 12-10-2018 AMJ96_CH01193 b1493d2a76baa9f851bfd52c125ec166 163 Pfam PF13302 Acetyltransferase (GNAT) domain 58 141 4.1E-16 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH00581 f3e637f6a962d7deecc2b93c693e5dee 146 Pfam PF13474 SnoaL-like domain 22 132 4.8E-14 T 12-10-2018 IPR037401 SnoaL-like domain AMJ96_CH00581 f3e637f6a962d7deecc2b93c693e5dee 146 SUPERFAMILY SSF54427 9 129 3.68E-20 T 12-10-2018 IPR032710 NTF2-like domain superfamily AMJ96_CH00581 f3e637f6a962d7deecc2b93c693e5dee 146 Gene3D G3DSA:3.10.450.50 6 146 7.5E-28 T 12-10-2018 AMJ96_CH00683 44284f7b7c98b72ab153dca5ff7e9fa8 185 SUPERFAMILY SSF64438 9 155 6.13E-48 T 12-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic AMJ96_CH00683 44284f7b7c98b72ab153dca5ff7e9fa8 185 Gene3D G3DSA:3.30.1330.200 7 164 2.6E-47 T 12-10-2018 IPR038592 CheD-like superfamily AMJ96_CH00683 44284f7b7c98b72ab153dca5ff7e9fa8 185 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 6 158 27.93 T 12-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 AMJ96_CH00683 44284f7b7c98b72ab153dca5ff7e9fa8 185 Pfam PF03975 CheD chemotactic sensory transduction 53 150 9.5E-27 T 12-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 AMJ96_CH04190 8f66f25a74861e631078f89d37d5657b 246 Pfam PF06764 Protein of unknown function (DUF1223) 29 223 1.2E-62 T 12-10-2018 IPR010634 Protein of unknown function DUF1223 AMJ96_CH04190 8f66f25a74861e631078f89d37d5657b 246 SUPERFAMILY SSF52833 23 240 1.51E-69 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_CH02115 82c415c7894cc4efd601eb423470e4b2 324 SUPERFAMILY SSF51658 9 323 1.55E-37 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_CH02115 82c415c7894cc4efd601eb423470e4b2 324 Gene3D G3DSA:3.20.20.150 11 324 8.6E-87 T 12-10-2018 AMJ96_CH02115 82c415c7894cc4efd601eb423470e4b2 324 Pfam PF03786 D-mannonate dehydratase (UxuA) 35 109 3.4E-5 T 12-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AMJ96_CH02115 82c415c7894cc4efd601eb423470e4b2 324 Pfam PF03786 D-mannonate dehydratase (UxuA) 148 301 4.3E-33 T 12-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AMJ96_PB00052 19f7166c3a3bf2999dc0e831e82d5bd9 88 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 6 53 3.8E-9 T 12-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead AMJ96_PB00052 19f7166c3a3bf2999dc0e831e82d5bd9 88 SUPERFAMILY SSF54665 5 57 7.85E-13 T 12-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily AMJ96_PB00052 19f7166c3a3bf2999dc0e831e82d5bd9 88 Gene3D G3DSA:3.90.1170.50 3 88 4.1E-12 T 12-10-2018 AMJ96_CH00028 020055c6056372169e1b45213f9462d5 243 SUPERFAMILY SSF53448 4 236 1.28E-47 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00028 020055c6056372169e1b45213f9462d5 243 Gene3D G3DSA:3.90.550.10 5 240 2.6E-48 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00028 020055c6056372169e1b45213f9462d5 243 Pfam PF12804 MobA-like NTP transferase domain 6 134 1.7E-17 T 12-10-2018 IPR025877 MobA-like NTP transferase AMJ96_PD00329 5b35448cf619bbbdc7a8080d5cbd0c24 291 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 21 262 1.4E-68 T 12-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region AMJ96_PD00329 5b35448cf619bbbdc7a8080d5cbd0c24 291 SUPERFAMILY SSF63829 13 290 5.56E-61 T 12-10-2018 AMJ96_PD00329 5b35448cf619bbbdc7a8080d5cbd0c24 291 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 22 39 2.0E-30 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_PD00329 5b35448cf619bbbdc7a8080d5cbd0c24 291 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 97 118 2.0E-30 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_PD00329 5b35448cf619bbbdc7a8080d5cbd0c24 291 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 202 219 2.0E-30 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_PD00329 5b35448cf619bbbdc7a8080d5cbd0c24 291 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 139 161 2.0E-30 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_PD00329 5b35448cf619bbbdc7a8080d5cbd0c24 291 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 162 182 2.0E-30 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_PD00329 5b35448cf619bbbdc7a8080d5cbd0c24 291 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 244 262 2.0E-30 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) AMJ96_PD00329 5b35448cf619bbbdc7a8080d5cbd0c24 291 Gene3D G3DSA:2.120.10.30 9 291 5.0E-76 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like AMJ96_CH01058 549515d1503f2688f9e68906d6e1082d 79 Pfam PF06169 Protein of unknown function (DUF982) 8 76 3.0E-13 T 12-10-2018 IPR010385 Protein of unknown function DUF982 AMJ96_CH04158 be67061b521be2d86eb1f56eb0d1693a 161 Pfam PF05099 Tellurite resistance protein TerB 5 144 6.9E-43 T 12-10-2018 IPR007791 Co-chaperone DjlA, N-terminal AMJ96_CH04158 be67061b521be2d86eb1f56eb0d1693a 161 SUPERFAMILY SSF158682 1 149 3.01E-30 T 12-10-2018 IPR029024 TerB-like AMJ96_CH04158 be67061b521be2d86eb1f56eb0d1693a 161 Gene3D G3DSA:1.10.3680.10 1 140 9.4E-22 T 12-10-2018 IPR029024 TerB-like AMJ96_PC00401 5d0ebf144f63c0c093ce74e94f8bdb71 407 Pfam PF07690 Major Facilitator Superfamily 18 359 2.0E-14 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_PC00401 5d0ebf144f63c0c093ce74e94f8bdb71 407 SUPERFAMILY SSF103473 10 398 2.44E-30 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_PC00401 5d0ebf144f63c0c093ce74e94f8bdb71 407 Gene3D G3DSA:1.20.1250.20 7 199 1.4E-12 T 12-10-2018 AMJ96_PC00401 5d0ebf144f63c0c093ce74e94f8bdb71 407 Gene3D G3DSA:1.20.1250.20 211 400 4.9E-11 T 12-10-2018 AMJ96_CH01037 34fb4994a344bf095f6965e8048186c2 511 Pfam PF12161 HsdM N-terminal domain 7 47 1.7E-6 T 12-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain AMJ96_CH01037 34fb4994a344bf095f6965e8048186c2 511 Gene3D G3DSA:3.40.50.150 177 467 2.1E-70 T 12-10-2018 AMJ96_CH01037 34fb4994a344bf095f6965e8048186c2 511 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 285 291 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AMJ96_CH01037 34fb4994a344bf095f6965e8048186c2 511 Pfam PF02384 N-6 DNA Methylase 150 471 2.3E-72 T 12-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 AMJ96_CH01037 34fb4994a344bf095f6965e8048186c2 511 SUPERFAMILY SSF53335 5 503 4.8E-118 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH01037 34fb4994a344bf095f6965e8048186c2 511 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 311 335 1.3E-20 T 12-10-2018 AMJ96_CH01037 34fb4994a344bf095f6965e8048186c2 511 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 198 212 1.3E-20 T 12-10-2018 AMJ96_CH01037 34fb4994a344bf095f6965e8048186c2 511 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 174 190 1.3E-20 T 12-10-2018 AMJ96_CH01037 34fb4994a344bf095f6965e8048186c2 511 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 282 294 1.3E-20 T 12-10-2018 AMJ96_CH00556 1fa0ade59050f99775eac1d153d215fe 447 TIGRFAM TIGR00797 matE: MATE efflux family protein 24 417 7.1E-65 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMJ96_CH00556 1fa0ade59050f99775eac1d153d215fe 447 Pfam PF01554 MatE 251 387 4.8E-14 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMJ96_CH00556 1fa0ade59050f99775eac1d153d215fe 447 Pfam PF01554 MatE 24 183 5.7E-15 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AMJ96_CH01892 df56bae74c31f60aa2adedf83190da8c 48 Pfam PF06568 Domain of unknown function (DUF1127) 5 39 1.1E-15 T 12-10-2018 IPR009506 Protein of unknown function DUF1127 AMJ96_PB00197 220ecda1d48cf196bdde4c861d4d1a59 285 Gene3D G3DSA:2.60.40.2500 154 279 2.4E-37 T 12-10-2018 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily AMJ96_PB00197 220ecda1d48cf196bdde4c861d4d1a59 285 TIGRFAM TIGR02781 VirB9: P-type conjugative transfer protein VirB9 9 257 3.6E-76 T 12-10-2018 IPR014148 P-type conjugative transfer protein VirB9 AMJ96_PB00197 220ecda1d48cf196bdde4c861d4d1a59 285 Pfam PF03524 Conjugal transfer protein 32 255 1.3E-59 T 12-10-2018 IPR010258 Conjugal transfer, TrbG/VirB9/CagX AMJ96_CH01976 8e1262930ff7e028099af1607ce11b69 358 Pfam PF05816 Toxic anion resistance protein (TelA) 25 356 1.5E-93 T 12-10-2018 IPR008863 Toxic anion resistance AMJ96_CH01976 8e1262930ff7e028099af1607ce11b69 358 PIRSF PIRSF026508 2 358 1.9E-86 T 12-10-2018 IPR008863 Toxic anion resistance AMJ96_PA00221 ae1cf77a6a310e92ce494fab6a6c3e7e 144 SUPERFAMILY SSF46785 8 125 7.23E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PA00221 ae1cf77a6a310e92ce494fab6a6c3e7e 144 SMART SM00347 32 138 1.0E-4 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_PA00221 ae1cf77a6a310e92ce494fab6a6c3e7e 144 Gene3D G3DSA:1.10.10.10 2 136 4.2E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PA00221 ae1cf77a6a310e92ce494fab6a6c3e7e 144 Pfam PF12802 MarR family 38 98 1.9E-14 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AMJ96_PD00004 032e0c0056b906f142d79e64a3935bb8 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 6.2E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00004 032e0c0056b906f142d79e64a3935bb8 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 6.2E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00004 032e0c0056b906f142d79e64a3935bb8 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 6.2E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00004 032e0c0056b906f142d79e64a3935bb8 304 Gene3D G3DSA:3.40.190.10 95 291 2.7E-61 T 12-10-2018 AMJ96_PD00004 032e0c0056b906f142d79e64a3935bb8 304 Gene3D G3DSA:1.10.10.10 1 88 1.4E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PD00004 032e0c0056b906f142d79e64a3935bb8 304 Gene3D G3DSA:3.40.190.10 164 262 2.7E-61 T 12-10-2018 AMJ96_PD00004 032e0c0056b906f142d79e64a3935bb8 304 SUPERFAMILY SSF53850 95 297 1.01E-37 T 12-10-2018 AMJ96_PD00004 032e0c0056b906f142d79e64a3935bb8 304 SUPERFAMILY SSF46785 4 114 8.79E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00004 032e0c0056b906f142d79e64a3935bb8 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 8.2E-23 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00004 032e0c0056b906f142d79e64a3935bb8 304 Pfam PF03466 LysR substrate binding domain 95 293 2.2E-42 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_CH02916 2ed3d9e834fd11622f89d7a2d5aecf26 449 Pfam PF13416 Bacterial extracellular solute-binding protein 56 369 8.2E-32 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH02916 2ed3d9e834fd11622f89d7a2d5aecf26 449 Gene3D G3DSA:3.40.190.10 156 433 1.4E-105 T 12-10-2018 AMJ96_CH02916 2ed3d9e834fd11622f89d7a2d5aecf26 449 Gene3D G3DSA:3.40.190.10 42 393 1.4E-105 T 12-10-2018 AMJ96_CH02916 2ed3d9e834fd11622f89d7a2d5aecf26 449 SUPERFAMILY SSF53850 39 435 7.25E-57 T 12-10-2018 AMJ96_CH04127 33205d10ac06b8d43deb9bebad6cb211 316 Pfam PF01553 Acyltransferase 91 222 3.4E-12 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMJ96_CH04127 33205d10ac06b8d43deb9bebad6cb211 316 SMART SM00563 103 225 1.4E-5 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 AMJ96_CH04127 33205d10ac06b8d43deb9bebad6cb211 316 SUPERFAMILY SSF69593 82 226 2.75E-10 T 12-10-2018 AMJ96_CH01184 00f1df232aacc2a4c547aa7b21d79be0 335 Pfam PF06089 L-asparaginase II 7 328 3.0E-116 T 12-10-2018 IPR010349 L-asparaginase II AMJ96_CH00507 5feed25deb68955023a229d690f14e7d 241 Pfam PF03932 CutC family 4 201 4.3E-69 T 12-10-2018 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 AMJ96_CH00507 5feed25deb68955023a229d690f14e7d 241 Hamap MF_00795 Copper homeostasis protein CutC [cutC]. 3 204 28.732 T 12-10-2018 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 AMJ96_CH00507 5feed25deb68955023a229d690f14e7d 241 Gene3D G3DSA:3.20.20.380 2 240 1.3E-74 T 12-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 AMJ96_CH00507 5feed25deb68955023a229d690f14e7d 241 SUPERFAMILY SSF110395 3 237 7.98E-59 T 12-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 AMJ96_PC00453 f2b00383ca2ce0a2f14ed2a1eda1d8ec 408 SUPERFAMILY SSF55424 312 407 2.06E-19 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMJ96_PC00453 f2b00383ca2ce0a2f14ed2a1eda1d8ec 408 Pfam PF14759 Reductase C-terminal 318 406 2.6E-20 T 12-10-2018 IPR028202 Reductase, C-terminal AMJ96_PC00453 f2b00383ca2ce0a2f14ed2a1eda1d8ec 408 Gene3D G3DSA:3.50.50.60 5 307 3.0E-102 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00453 f2b00383ca2ce0a2f14ed2a1eda1d8ec 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 98 116 3.5E-25 T 12-10-2018 AMJ96_PC00453 f2b00383ca2ce0a2f14ed2a1eda1d8ec 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 3.5E-25 T 12-10-2018 AMJ96_PC00453 f2b00383ca2ce0a2f14ed2a1eda1d8ec 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 228 244 3.5E-25 T 12-10-2018 AMJ96_PC00453 f2b00383ca2ce0a2f14ed2a1eda1d8ec 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 253 275 3.5E-25 T 12-10-2018 AMJ96_PC00453 f2b00383ca2ce0a2f14ed2a1eda1d8ec 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 3.5E-25 T 12-10-2018 AMJ96_PC00453 f2b00383ca2ce0a2f14ed2a1eda1d8ec 408 Gene3D G3DSA:3.50.50.60 111 235 3.0E-102 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00453 f2b00383ca2ce0a2f14ed2a1eda1d8ec 408 SUPERFAMILY SSF51905 3 309 8.64E-42 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PC00453 f2b00383ca2ce0a2f14ed2a1eda1d8ec 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 168 1.7E-18 T 12-10-2018 AMJ96_PC00453 f2b00383ca2ce0a2f14ed2a1eda1d8ec 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 1.7E-18 T 12-10-2018 AMJ96_PC00453 f2b00383ca2ce0a2f14ed2a1eda1d8ec 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 229 243 1.7E-18 T 12-10-2018 AMJ96_PC00453 f2b00383ca2ce0a2f14ed2a1eda1d8ec 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 268 275 1.7E-18 T 12-10-2018 AMJ96_PC00453 f2b00383ca2ce0a2f14ed2a1eda1d8ec 408 Gene3D G3DSA:3.30.390.30 318 408 4.7E-19 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 AMJ96_PC00453 f2b00383ca2ce0a2f14ed2a1eda1d8ec 408 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 299 8.6E-66 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AMJ96_PC00196 676dd549beb9adc3aebe67cc5a9f65fd 198 Pfam PF12796 Ankyrin repeats (3 copies) 23 109 7.6E-14 T 12-10-2018 IPR020683 Ankyrin repeat-containing domain AMJ96_PC00196 676dd549beb9adc3aebe67cc5a9f65fd 198 Pfam PF12796 Ankyrin repeats (3 copies) 117 175 1.1E-6 T 12-10-2018 IPR020683 Ankyrin repeat-containing domain AMJ96_PC00196 676dd549beb9adc3aebe67cc5a9f65fd 198 SMART SM00248 18 47 960.0 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMJ96_PC00196 676dd549beb9adc3aebe67cc5a9f65fd 198 SMART SM00248 118 147 0.13 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMJ96_PC00196 676dd549beb9adc3aebe67cc5a9f65fd 198 SMART SM00248 84 113 0.0014 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMJ96_PC00196 676dd549beb9adc3aebe67cc5a9f65fd 198 SMART SM00248 51 80 6.1 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMJ96_PC00196 676dd549beb9adc3aebe67cc5a9f65fd 198 SMART SM00248 151 180 98.0 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMJ96_PC00196 676dd549beb9adc3aebe67cc5a9f65fd 198 Gene3D G3DSA:1.25.40.20 7 196 7.6E-43 T 12-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMJ96_PC00196 676dd549beb9adc3aebe67cc5a9f65fd 198 PRINTS PR01415 Ankyrin repeat signature 85 100 7.6E-6 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMJ96_PC00196 676dd549beb9adc3aebe67cc5a9f65fd 198 PRINTS PR01415 Ankyrin repeat signature 134 148 7.6E-6 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 AMJ96_PC00196 676dd549beb9adc3aebe67cc5a9f65fd 198 SUPERFAMILY SSF48403 22 176 8.78E-39 T 12-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily AMJ96_CH01247 daf00c953a3ee0b8ec085f8ae3cebe60 281 Gene3D G3DSA:3.60.21.10 4 274 1.1E-71 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like AMJ96_CH01247 daf00c953a3ee0b8ec085f8ae3cebe60 281 SUPERFAMILY SSF56300 8 276 1.9E-58 T 12-10-2018 AMJ96_CH01247 daf00c953a3ee0b8ec085f8ae3cebe60 281 Pfam PF00149 Calcineurin-like phosphoesterase 9 230 2.0E-14 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMJ96_CH04317 ea4629e21359719d7d652e87f4aa2906 105 SUPERFAMILY SSF141091 1 102 3.79E-37 T 12-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04317 ea4629e21359719d7d652e87f4aa2906 105 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 26.257 T 12-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04317 ea4629e21359719d7d652e87f4aa2906 105 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 102 1.2E-35 T 12-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_CH04317 ea4629e21359719d7d652e87f4aa2906 105 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 3.2E-40 T 12-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AMJ96_PB00113 88d7500b40c343bcf029c96e4a06987f 174 SUPERFAMILY SSF47413 35 114 5.36E-20 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_PB00113 88d7500b40c343bcf029c96e4a06987f 174 Gene3D G3DSA:1.10.260.40 37 104 2.6E-13 T 12-10-2018 AMJ96_PB00113 88d7500b40c343bcf029c96e4a06987f 174 Pfam PF01381 Helix-turn-helix 47 99 5.0E-9 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_PB00113 88d7500b40c343bcf029c96e4a06987f 174 SMART SM00530 46 101 1.5E-9 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_PB00386 90e874c46494f7bef3774fca49802c16 67 Gene3D G3DSA:1.10.287.660 1 67 5.4E-26 T 12-10-2018 IPR029012 Helix hairpin bin domain superfamily AMJ96_PB00386 90e874c46494f7bef3774fca49802c16 67 PIRSF PIRSF037676 1 67 1.8E-28 T 12-10-2018 IPR007774 Putative nitrogen fixation protein AMJ96_PB00386 90e874c46494f7bef3774fca49802c16 67 Pfam PF05082 Rop-like 3 64 3.1E-25 T 12-10-2018 IPR007774 Putative nitrogen fixation protein AMJ96_CH00967 62f1b4dbdd8c7dd350f0f4201baf9c3d 213 Gene3D G3DSA:1.20.58.220 15 212 1.4E-50 T 12-10-2018 IPR038078 PhoU-like domain superfamily AMJ96_CH00967 62f1b4dbdd8c7dd350f0f4201baf9c3d 213 Pfam PF01865 Protein of unknown function DUF47 5 211 5.7E-58 T 12-10-2018 IPR018445 Putative phosphate transport regulator AMJ96_CH03034 223ed1e0e2a2f91bdb021468cb6ceaff 473 SUPERFAMILY SSF56601 115 453 3.58E-66 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like AMJ96_CH03034 223ed1e0e2a2f91bdb021468cb6ceaff 473 Gene3D G3DSA:3.40.710.10 129 437 4.4E-60 T 12-10-2018 AMJ96_CH03034 223ed1e0e2a2f91bdb021468cb6ceaff 473 Pfam PF00144 Beta-lactamase 167 432 1.8E-23 T 12-10-2018 IPR001466 Beta-lactamase-related AMJ96_CH02023 18bd275c35864ae50c6724bdd735db4b 395 Gene3D G3DSA:1.20.1250.20 3 386 6.5E-36 T 12-10-2018 AMJ96_CH02023 18bd275c35864ae50c6724bdd735db4b 395 Pfam PF07690 Major Facilitator Superfamily 34 345 1.8E-23 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH02023 18bd275c35864ae50c6724bdd735db4b 395 SUPERFAMILY SSF103473 5 386 3.66E-34 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_PD00392 007f5beb380ddd1a3c98e54e3184cdaf 364 Gene3D G3DSA:1.50.10.10 4 359 6.9E-108 T 12-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 AMJ96_PD00392 007f5beb380ddd1a3c98e54e3184cdaf 364 Pfam PF07470 Glycosyl Hydrolase Family 88 44 357 6.8E-95 T 12-10-2018 IPR010905 Glycosyl hydrolase, family 88 AMJ96_PD00392 007f5beb380ddd1a3c98e54e3184cdaf 364 SUPERFAMILY SSF48208 41 357 3.29E-65 T 12-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 AMJ96_CH01796 62ba92b75e47d9f2002df3b1d50e6fbd 156 SUPERFAMILY SSF55785 48 149 5.58E-9 T 12-10-2018 IPR035965 PAS domain superfamily AMJ96_CH01796 62ba92b75e47d9f2002df3b1d50e6fbd 156 Pfam PF08670 MEKHLA domain 18 154 1.3E-46 T 12-10-2018 IPR013978 MEKHLA AMJ96_CH01796 62ba92b75e47d9f2002df3b1d50e6fbd 156 Gene3D G3DSA:3.30.450.20 43 155 1.4E-8 T 12-10-2018 AMJ96_PD00110 ba1bb745a6d1570f7c0f378f7f5e0863 79 SUPERFAMILY SSF47598 2 45 7.45E-11 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMJ96_PD00110 ba1bb745a6d1570f7c0f378f7f5e0863 79 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 6 72 2.2E-6 T 12-10-2018 IPR022789 Antitoxin ParD AMJ96_PD00110 ba1bb745a6d1570f7c0f378f7f5e0863 79 Gene3D G3DSA:1.10.8.1250 10 79 1.5E-7 T 12-10-2018 IPR038296 Antitoxin ParD superfamily AMJ96_PD00110 ba1bb745a6d1570f7c0f378f7f5e0863 79 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 3 62 1.2E-14 T 12-10-2018 IPR022789 Antitoxin ParD AMJ96_PA00267 5fae46d4f1f34b635335f52ea7d2226a 295 Gene3D G3DSA:1.10.3720.10 48 290 3.0E-55 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00267 5fae46d4f1f34b635335f52ea7d2226a 295 SUPERFAMILY SSF161098 52 277 9.68E-49 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00267 5fae46d4f1f34b635335f52ea7d2226a 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 277 2.0E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02834 658edebb10ad82f11c42f637d3fd660c 209 Gene3D G3DSA:2.130.10.10 9 208 6.2E-19 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 AMJ96_CH02834 658edebb10ad82f11c42f637d3fd660c 209 Pfam PF13360 PQQ-like domain 73 170 4.1E-7 T 12-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat AMJ96_CH02834 658edebb10ad82f11c42f637d3fd660c 209 SUPERFAMILY SSF50969 15 207 2.9E-27 T 12-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like AMJ96_PD00525 e5109b2ea33e9f9af7869d2e92baf61a 212 Pfam PF00765 Autoinducer synthase 13 168 2.5E-30 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AMJ96_PD00525 e5109b2ea33e9f9af7869d2e92baf61a 212 PRINTS PR01549 Autoinducer synthesis protein signature 19 38 3.6E-15 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AMJ96_PD00525 e5109b2ea33e9f9af7869d2e92baf61a 212 PRINTS PR01549 Autoinducer synthesis protein signature 97 109 3.6E-15 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AMJ96_PD00525 e5109b2ea33e9f9af7869d2e92baf61a 212 PRINTS PR01549 Autoinducer synthesis protein signature 142 163 3.6E-15 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AMJ96_PD00525 e5109b2ea33e9f9af7869d2e92baf61a 212 PRINTS PR01549 Autoinducer synthesis protein signature 64 82 3.6E-15 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AMJ96_PD00525 e5109b2ea33e9f9af7869d2e92baf61a 212 PRINTS PR01549 Autoinducer synthesis protein signature 120 141 3.6E-15 T 12-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AMJ96_PD00525 e5109b2ea33e9f9af7869d2e92baf61a 212 ProSitePatterns PS00949 Autoinducer synthase family signature. 23 48 - T 12-10-2018 IPR018311 Autoinducer synthesis, conserved site KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 AMJ96_PD00525 e5109b2ea33e9f9af7869d2e92baf61a 212 Gene3D G3DSA:3.40.630.30 1 207 3.7E-44 T 12-10-2018 AMJ96_PD00525 e5109b2ea33e9f9af7869d2e92baf61a 212 SUPERFAMILY SSF55729 1 197 7.34E-36 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH03551 2581e1b58a03beee5b31501fc0ced2a3 215 Gene3D G3DSA:3.30.565.10 79 211 6.1E-34 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH03551 2581e1b58a03beee5b31501fc0ced2a3 215 Pfam PF10090 Histidine phosphotransferase C-terminal domain 83 204 6.4E-37 T 12-10-2018 IPR018762 Histidine phosphotransferase ChpT, C-terminal AMJ96_CH03551 2581e1b58a03beee5b31501fc0ced2a3 215 Gene3D G3DSA:1.10.287.130 6 78 3.1E-31 T 12-10-2018 AMJ96_PD00296 f84c723f28dbdd7f5947c2cec913cf05 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 267 6.9E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00296 f84c723f28dbdd7f5947c2cec913cf05 276 SUPERFAMILY SSF161098 7 276 5.23E-65 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00296 f84c723f28dbdd7f5947c2cec913cf05 276 Gene3D G3DSA:1.10.3720.10 4 263 7.5E-56 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH04329 afd61386b0160801e502fff7cecc5ebc 125 Gene3D G3DSA:1.10.10.10 8 123 3.0E-40 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH04329 afd61386b0160801e502fff7cecc5ebc 125 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 27 89 3.1E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_CH04329 afd61386b0160801e502fff7cecc5ebc 125 SUPERFAMILY SSF46785 12 108 6.33E-25 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PB00328 b876d5ef9a596beeb1af11d6e5a6edf2 135 SUPERFAMILY SSF48295 18 67 3.4E-12 T 12-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AMJ96_PB00328 b876d5ef9a596beeb1af11d6e5a6edf2 135 Pfam PF01527 Transposase 20 91 6.1E-19 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMJ96_PB00312 11574ac18aa788fd342f0f6ec778ff9f 70 SUPERFAMILY SSF159203 1 66 3.14E-26 T 12-10-2018 IPR024044 NifT/FixU barrel-like domain superfamily AMJ96_PB00312 11574ac18aa788fd342f0f6ec778ff9f 70 Pfam PF06988 NifT/FixU protein 1 63 2.3E-27 T 12-10-2018 IPR009727 NifT/FixU GO:0009399 AMJ96_PB00312 11574ac18aa788fd342f0f6ec778ff9f 70 TIGRFAM TIGR02934 nifT_nitrog: probable nitrogen fixation protein FixT 1 66 1.6E-30 T 12-10-2018 IPR009727 NifT/FixU GO:0009399 AMJ96_PB00312 11574ac18aa788fd342f0f6ec778ff9f 70 Gene3D G3DSA:2.40.50.240 1 66 2.5E-30 T 12-10-2018 IPR024044 NifT/FixU barrel-like domain superfamily AMJ96_CH00183 346ef99cb88d019760a95759edcf497b 362 SUPERFAMILY SSF161098 127 340 5.23E-15 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00183 346ef99cb88d019760a95759edcf497b 362 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 148 355 4.8E-34 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH00183 346ef99cb88d019760a95759edcf497b 362 Gene3D G3DSA:1.10.3720.10 119 351 2.4E-18 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PB00409 48b6e041000057e688230dc55f220346 341 Pfam PF00296 Luciferase-like monooxygenase 12 312 1.6E-41 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMJ96_PB00409 48b6e041000057e688230dc55f220346 341 SUPERFAMILY SSF51679 20 327 1.11E-63 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_PB00409 48b6e041000057e688230dc55f220346 341 Gene3D G3DSA:3.20.20.30 13 340 4.2E-68 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_PB00118 113857557e1d541ccc7899d28aeea366 366 PIRSF PIRSF020979 5 366 5.5E-181 T 12-10-2018 IPR011215 Phosphoribosyl transferase AMJ96_PB00118 113857557e1d541ccc7899d28aeea366 366 Pfam PF15608 PELOTA RNA binding domain 284 363 1.6E-25 T 12-10-2018 IPR028157 PELOTA RNA-binding domain AMJ96_PB00118 113857557e1d541ccc7899d28aeea366 366 Pfam PF11202 Phosphoribosyl transferase (PRTase) 15 255 9.2E-96 T 12-10-2018 IPR011215 Phosphoribosyl transferase AMJ96_CH00512 a842cd0cc6a2e7efc345c540fe306169 148 Pfam PF05025 RbsD / FucU transport protein family 4 140 1.0E-35 T 12-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AMJ96_CH00512 a842cd0cc6a2e7efc345c540fe306169 148 Gene3D G3DSA:3.40.1650.10 1 143 1.6E-50 T 12-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AMJ96_CH00512 a842cd0cc6a2e7efc345c540fe306169 148 SUPERFAMILY SSF102546 1 140 3.14E-41 T 12-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AMJ96_CH01614 73575b9c36e6d55e306593a5896d6fa5 103 Pfam PF06169 Protein of unknown function (DUF982) 10 81 6.3E-24 T 12-10-2018 IPR010385 Protein of unknown function DUF982 AMJ96_CH01055 39a8b16e3bf0cf473423cf4842c89601 282 SUPERFAMILY SSF51735 4 238 6.71E-45 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH01055 39a8b16e3bf0cf473423cf4842c89601 282 Pfam PF13460 NAD(P)H-binding 7 179 3.1E-19 T 12-10-2018 IPR016040 NAD(P)-binding domain AMJ96_CH01055 39a8b16e3bf0cf473423cf4842c89601 282 Gene3D G3DSA:3.90.25.10 137 267 4.4E-68 T 12-10-2018 AMJ96_CH01055 39a8b16e3bf0cf473423cf4842c89601 282 Gene3D G3DSA:3.40.50.720 5 266 4.4E-68 T 12-10-2018 AMJ96_CH00950 eb3e5733e8bc599176dab7d93e8849d8 202 Pfam PF02361 Cobalt transport protein 10 195 1.0E-13 T 12-10-2018 IPR003339 ABC/ECF transporter, transmembrane component AMJ96_CH03437 bd1c548e684c3fc4046a19e7fab6515e 469 Pfam PF04932 O-Antigen ligase 242 385 7.9E-9 T 12-10-2018 IPR007016 O-antigen ligase-related AMJ96_CH03612 981482a788dbf38e556aa355bb1eb150 191 Pfam PF01322 Cytochrome C' 40 133 8.8E-10 T 12-10-2018 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 AMJ96_CH03612 981482a788dbf38e556aa355bb1eb150 191 SUPERFAMILY SSF47175 39 191 1.13E-18 T 12-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 AMJ96_CH00282 6183bbc918879de0e34015c0f0b0d964 147 Gene3D G3DSA:3.40.630.30 2 144 3.9E-39 T 12-10-2018 AMJ96_CH00282 6183bbc918879de0e34015c0f0b0d964 147 SUPERFAMILY SSF55729 4 133 2.03E-31 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH00282 6183bbc918879de0e34015c0f0b0d964 147 Pfam PF00583 Acetyltransferase (GNAT) family 40 131 2.5E-17 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH01655 7e269b07b8524f6581714c8ed76e69f5 434 Pfam PF12704 MacB-like periplasmic core domain 50 263 8.1E-16 T 12-10-2018 IPR025857 MacB-like periplasmic core domain AMJ96_CH01655 7e269b07b8524f6581714c8ed76e69f5 434 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 24 434 7.5E-151 T 12-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 AMJ96_CH01655 7e269b07b8524f6581714c8ed76e69f5 434 Pfam PF02687 FtsX-like permease family 321 427 1.7E-10 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AMJ96_CH00993 f2725ab82214d6e6175a6d7691501286 290 SUPERFAMILY SSF81345 14 270 5.23E-23 T 12-10-2018 IPR037294 ABC transporter, BtuC-like AMJ96_CH00993 f2725ab82214d6e6175a6d7691501286 290 Pfam PF00950 ABC 3 transport family 14 273 6.4E-54 T 12-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 AMJ96_CH03045 9978103a42ef9d6956cd97234b8cca8f 246 Gene3D G3DSA:3.90.730.10 20 246 8.5E-67 T 12-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 AMJ96_CH03045 9978103a42ef9d6956cd97234b8cca8f 246 ProSitePatterns PS00531 Ribonuclease T2 family histidine active site 2. 120 131 - T 12-10-2018 IPR033130 Ribonuclease T2, His active site 2 Reactome: R-HSA-6798695 AMJ96_CH03045 9978103a42ef9d6956cd97234b8cca8f 246 ProSitePatterns PS00530 Ribonuclease T2 family histidine active site 1. 65 72 - T 12-10-2018 IPR018188 Ribonuclease T2, His active site 1 GO:0003723|GO:0033897 Reactome: R-HSA-6798695 AMJ96_CH03045 9978103a42ef9d6956cd97234b8cca8f 246 SUPERFAMILY SSF55895 30 212 1.18E-27 T 12-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 AMJ96_CH03045 9978103a42ef9d6956cd97234b8cca8f 246 Pfam PF00445 Ribonuclease T2 family 32 208 1.7E-20 T 12-10-2018 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 Reactome: R-HSA-6798695 AMJ96_CH03790 f20d6020f60a7281ad0434dca29e3eb8 101 Pfam PF06844 Protein of unknown function (DUF1244) 30 95 1.8E-36 T 12-10-2018 IPR023163 SMc04008-like domain AMJ96_CH03790 f20d6020f60a7281ad0434dca29e3eb8 101 Gene3D G3DSA:1.10.3340.10 1 101 5.6E-48 T 12-10-2018 IPR036810 SMc04008-like superfamily AMJ96_CH03790 f20d6020f60a7281ad0434dca29e3eb8 101 SUPERFAMILY SSF158757 4 80 3.27E-38 T 12-10-2018 IPR036810 SMc04008-like superfamily AMJ96_PC00388 245423aedc4a1db66b036a939bb3dd41 285 Gene3D G3DSA:1.10.3720.10 3 275 1.5E-54 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00388 245423aedc4a1db66b036a939bb3dd41 285 SUPERFAMILY SSF161098 10 284 7.98E-62 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00388 245423aedc4a1db66b036a939bb3dd41 285 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 275 9.3E-10 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00666 1db3c1032ac0a78dce8ddc8075be76e0 344 Pfam PF13362 Toprim domain 233 323 8.4E-16 T 12-10-2018 IPR006171 TOPRIM domain AMJ96_CH03226 0fca5a2fd14983d82bd97d71d2bf2292 252 Pfam PF09849 Uncharacterized protein conserved in bacteria (DUF2076) 1 246 3.1E-74 T 12-10-2018 IPR018648 Protein of unknown function DUF2076 AMJ96_CH01010 5b428baee0ebbb75182da4cea4b1c00e 109 Pfam PF07978 NIPSNAP 5 100 1.3E-25 T 12-10-2018 IPR012577 NIPSNAP AMJ96_CH01010 5b428baee0ebbb75182da4cea4b1c00e 109 SUPERFAMILY SSF54909 1 100 2.95E-20 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_PD00055 2c3369e7da175c4469d02a469c0405c6 167 Pfam PF05974 Domain of unknown function (DUF892) 6 160 3.0E-64 T 12-10-2018 IPR010287 Domain of unknown function DUF892 AMJ96_PD00055 2c3369e7da175c4469d02a469c0405c6 167 SUPERFAMILY SSF47240 3 155 3.11E-57 T 12-10-2018 IPR009078 Ferritin-like superfamily AMJ96_PD00055 2c3369e7da175c4469d02a469c0405c6 167 Gene3D G3DSA:1.20.1260.10 2 167 3.6E-66 T 12-10-2018 IPR012347 Ferritin-like AMJ96_PB00178 64df894d96fbf39df404a7ac060931dd 103 SUPERFAMILY SSF54909 10 101 4.54E-20 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_PB00178 64df894d96fbf39df404a7ac060931dd 103 Gene3D G3DSA:3.30.70.100 1 103 1.5E-30 T 12-10-2018 AMJ96_PB00178 64df894d96fbf39df404a7ac060931dd 103 Pfam PF03992 Antibiotic biosynthesis monooxygenase 11 83 1.3E-14 T 12-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AMJ96_CH00769 e97c0a66b17861f1941679dd2cc19e2d 144 Pfam PF13778 Domain of unknown function (DUF4174) 25 137 3.1E-24 T 12-10-2018 IPR025232 Domain of unknown function DUF4174 AMJ96_CH01031 8e228a080bc58734ef7ec718765b2e75 149 Pfam PF04134 Protein of unknown function, DUF393 24 133 5.2E-27 T 12-10-2018 IPR007263 Protein of unknown function DUF393 AMJ96_CH04187 5c626ac16d7a946a31958c2fa68f0231 242 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 22 238 8.4E-66 T 12-10-2018 IPR006214 Bax inhibitor 1-related AMJ96_PD00463 4c25f7311ef8a324248881808f7c4715 100 Gene3D G3DSA:3.10.20.440 3 96 3.8E-21 T 12-10-2018 AMJ96_PD00463 4c25f7311ef8a324248881808f7c4715 100 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 12 91 1.7E-29 T 12-10-2018 AMJ96_PD00463 4c25f7311ef8a324248881808f7c4715 100 SUPERFAMILY SSF54292 13 98 4.59E-20 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 AMJ96_CH02736 15006b7171b0506a327b4be00a5676aa 173 SUPERFAMILY SSF46785 7 114 1.12E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH02736 15006b7171b0506a327b4be00a5676aa 173 Pfam PF01638 HxlR-like helix-turn-helix 17 106 1.1E-13 T 12-10-2018 IPR002577 Helix-turn-helix, HxlR type AMJ96_CH02736 15006b7171b0506a327b4be00a5676aa 173 Gene3D G3DSA:1.10.10.10 4 126 1.2E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02155 de2d92fdf02a408cde83019b208a8198 155 Gene3D G3DSA:3.30.300.20 1 151 2.0E-48 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta AMJ96_CH02155 de2d92fdf02a408cde83019b208a8198 155 SUPERFAMILY SSF82784 1 150 2.22E-45 T 12-10-2018 IPR036102 OsmC/Ohr superfamily AMJ96_CH02155 de2d92fdf02a408cde83019b208a8198 155 Pfam PF02566 OsmC-like protein 52 149 6.4E-15 T 12-10-2018 IPR003718 OsmC/Ohr family AMJ96_CH00190 cc7d9bc5718e9777fd413d615da0925b 69 Pfam PF13619 KTSC domain 8 64 3.0E-12 T 12-10-2018 IPR025309 KTSC domain AMJ96_CH00963 786332ffe00dd7c704b16507d70d86a4 345 SUPERFAMILY SSF88713 59 311 2.05E-30 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMJ96_CH00963 786332ffe00dd7c704b16507d70d86a4 345 Pfam PF01522 Polysaccharide deacetylase 95 290 2.1E-24 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMJ96_PA00298 ce467e4768bd9316b26dca342751993e 272 Pfam PF00005 ABC transporter 30 179 1.4E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00298 ce467e4768bd9316b26dca342751993e 272 SMART SM00382 39 227 8.2E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00298 ce467e4768bd9316b26dca342751993e 272 SUPERFAMILY SSF52540 13 228 8.88E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00298 ce467e4768bd9316b26dca342751993e 272 Gene3D G3DSA:3.40.50.300 12 271 3.0E-61 T 12-10-2018 AMJ96_CH02813 d00264b8c5c975ac0d6dd23ac5552d3c 312 Gene3D G3DSA:3.40.50.1110 77 308 1.2E-20 T 12-10-2018 IPR036514 SGNH hydrolase superfamily AMJ96_CH02813 d00264b8c5c975ac0d6dd23ac5552d3c 312 SUPERFAMILY SSF52266 79 307 2.17E-28 T 12-10-2018 AMJ96_CH02813 d00264b8c5c975ac0d6dd23ac5552d3c 312 Pfam PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase 78 221 3.8E-15 T 12-10-2018 IPR005181 Sialate O-acetylesterase domain AMJ96_CH00906 e5757cd466b38f4601e6ef687c59d586 643 Pfam PF09972 Predicted membrane protein (DUF2207) 458 566 8.2E-21 T 12-10-2018 IPR018702 Protein of unknown function DUF2207, membrane AMJ96_CH00906 e5757cd466b38f4601e6ef687c59d586 643 Pfam PF09972 Predicted membrane protein (DUF2207) 28 450 1.2E-68 T 12-10-2018 IPR018702 Protein of unknown function DUF2207, membrane AMJ96_CH01744 71ea1f612480c5df4e7914c4db24bd90 130 Pfam PF10990 Protein of unknown function (DUF2809) 37 119 1.1E-23 T 12-10-2018 IPR021257 Protein of unknown function DUF2809 AMJ96_PC00151 83b02ac50435dc1a68862cd437e8fa59 169 SUPERFAMILY SSF52540 4 168 2.95E-13 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00151 83b02ac50435dc1a68862cd437e8fa59 169 Gene3D G3DSA:3.40.50.300 4 169 3.4E-10 T 12-10-2018 AMJ96_CH01407 893e577b7cd9990381bf9a3da33dac60 168 Gene3D G3DSA:2.160.10.10 98 162 1.5E-22 T 12-10-2018 AMJ96_CH01407 893e577b7cd9990381bf9a3da33dac60 168 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 109 137 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AMJ96_CH01407 893e577b7cd9990381bf9a3da33dac60 168 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 24 56 1.7E-8 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH01407 893e577b7cd9990381bf9a3da33dac60 168 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 103 135 1.8E-6 T 12-10-2018 IPR001451 Hexapeptide repeat AMJ96_CH01407 893e577b7cd9990381bf9a3da33dac60 168 Gene3D G3DSA:2.160.10.10 1 97 8.4E-17 T 12-10-2018 AMJ96_CH01407 893e577b7cd9990381bf9a3da33dac60 168 SUPERFAMILY SSF51161 2 161 4.04E-39 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily AMJ96_CH03837 460a80177e58b3f2d4c12b3f684fd3ad 805 SUPERFAMILY SSF56059 69 438 3.5E-15 T 12-10-2018 AMJ96_CH03837 460a80177e58b3f2d4c12b3f684fd3ad 805 Pfam PF14403 Circularly permuted ATP-grasp type 2 98 476 3.0E-141 T 12-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 AMJ96_CH03837 460a80177e58b3f2d4c12b3f684fd3ad 805 Gene3D G3DSA:3.40.50.11290 234 331 4.6E-34 T 12-10-2018 AMJ96_CH03837 460a80177e58b3f2d4c12b3f684fd3ad 805 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 524 804 2.8E-56 T 12-10-2018 IPR007296 Domain of unknown function DUF403 AMJ96_CH03702 8d20b67600036926ccf0b6cb8f9fa974 378 Gene3D G3DSA:3.30.1150.10 255 377 2.5E-16 T 12-10-2018 AMJ96_CH03928 afbd0c9a9937c949cf8570160f1f01fa 165 Pfam PF10003 Integral membrane protein (DUF2244) 19 158 7.0E-43 T 12-10-2018 IPR019253 Protein of unknown function DUF2244, transmembrane AMJ96_CH03928 afbd0c9a9937c949cf8570160f1f01fa 165 PIRSF PIRSF032162 1 165 1.4E-63 T 12-10-2018 IPR016990 Uncharacterised conserved protein UCP032162, transmembrane AMJ96_CH01617 39c8f8d2a9ad7bc0ac8d159050ef80de 414 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 359 368 - T 12-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 AMJ96_CH01617 39c8f8d2a9ad7bc0ac8d159050ef80de 414 Pfam PF00067 Cytochrome P450 289 386 2.9E-18 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH01617 39c8f8d2a9ad7bc0ac8d159050ef80de 414 Pfam PF00067 Cytochrome P450 86 263 1.2E-6 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH01617 39c8f8d2a9ad7bc0ac8d159050ef80de 414 Gene3D G3DSA:1.10.630.10 8 414 5.8E-109 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH01617 39c8f8d2a9ad7bc0ac8d159050ef80de 414 SUPERFAMILY SSF48264 20 414 1.31E-78 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 AMJ96_CH01617 39c8f8d2a9ad7bc0ac8d159050ef80de 414 PRINTS PR00359 B-class P450 signature 357 366 1.0E-42 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_CH01617 39c8f8d2a9ad7bc0ac8d159050ef80de 414 PRINTS PR00359 B-class P450 signature 167 182 1.0E-42 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_CH01617 39c8f8d2a9ad7bc0ac8d159050ef80de 414 PRINTS PR00359 B-class P450 signature 336 351 1.0E-42 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_CH01617 39c8f8d2a9ad7bc0ac8d159050ef80de 414 PRINTS PR00359 B-class P450 signature 366 377 1.0E-42 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_CH01617 39c8f8d2a9ad7bc0ac8d159050ef80de 414 PRINTS PR00359 B-class P450 signature 210 232 1.0E-42 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_CH01617 39c8f8d2a9ad7bc0ac8d159050ef80de 414 PRINTS PR00359 B-class P450 signature 291 302 1.0E-42 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_CH01617 39c8f8d2a9ad7bc0ac8d159050ef80de 414 PRINTS PR00359 B-class P450 signature 308 335 1.0E-42 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_CH01617 39c8f8d2a9ad7bc0ac8d159050ef80de 414 PRINTS PR00359 B-class P450 signature 150 166 1.0E-42 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_CH01617 39c8f8d2a9ad7bc0ac8d159050ef80de 414 PRINTS PR00359 B-class P450 signature 104 115 1.0E-42 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 AMJ96_CH03128 ff71149a582702c7eaaf1d292965c345 305 Pfam PF04228 Putative neutral zinc metallopeptidase 1 301 1.4E-131 T 12-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative AMJ96_CH03296 92c36c42f768460dd96644796d9fa22e 120 Pfam PF01934 Protein of unknown function DUF86 13 109 2.5E-7 T 12-10-2018 IPR008201 Protein of unknown function DUF86 AMJ96_PB00243 dd1321cbac5b78981a7e05ca5bc7714c 167 SUPERFAMILY SSF160719 40 153 1.44E-9 T 12-10-2018 AMJ96_PB00243 dd1321cbac5b78981a7e05ca5bc7714c 167 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 11 154 4.4E-21 T 12-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein AMJ96_PB00243 dd1321cbac5b78981a7e05ca5bc7714c 167 Pfam PF04965 Gene 25-like lysozyme 39 140 7.9E-19 T 12-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD AMJ96_CH02009 7ef39b9f8e5bc8e3dd39651dc440eace 82 Pfam PF04226 Transglycosylase associated protein 34 82 2.9E-13 T 12-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 AMJ96_CH02625 54b694bac152f353e4ae5a71e970875c 117 Pfam PF04752 ChaC-like protein 48 93 3.0E-13 T 12-10-2018 IPR006840 Glutathione-specific gamma-glutamylcyclotransferase GO:0003839|GO:0006751 KEGG: 00480+4.3.2.7|MetaCyc: PWY-7942|Reactome: R-HSA-174403 AMJ96_CH00244 a359cb817086b3c08c96e3530ba62f3c 159 SUPERFAMILY SSF54637 9 148 2.3E-29 T 12-10-2018 IPR029069 HotDog domain superfamily AMJ96_CH00244 a359cb817086b3c08c96e3530ba62f3c 159 Pfam PF07977 FabA-like domain 22 137 5.5E-17 T 12-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AMJ96_CH00244 a359cb817086b3c08c96e3530ba62f3c 159 Gene3D G3DSA:3.10.129.10 4 148 1.8E-36 T 12-10-2018 AMJ96_CH01305 11f7f72ecacd86e402332834918844b8 195 PIRSF PIRSF009471 1 194 7.4E-78 T 12-10-2018 IPR012038 Uncharacterised conserved protein UCP009471 AMJ96_CH01305 11f7f72ecacd86e402332834918844b8 195 SUPERFAMILY SSF160935 38 168 2.88E-11 T 12-10-2018 AMJ96_CH01305 11f7f72ecacd86e402332834918844b8 195 Pfam PF06742 Protein of unknown function (DUF1214) 72 171 1.1E-15 T 12-10-2018 IPR010621 Domain of unknown function DUF1214 AMJ96_CH00891 25d6c74d2cc3b7b36f9107d462931f70 172 Gene3D G3DSA:3.90.550.10 1 143 1.1E-9 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00891 25d6c74d2cc3b7b36f9107d462931f70 172 SUPERFAMILY SSF53448 2 111 7.88E-9 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH01945 249ccb7b165fe8a4eccd44aa17e28b9f 351 SUPERFAMILY SSF55166 222 339 1.49E-28 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMJ96_CH01945 249ccb7b165fe8a4eccd44aa17e28b9f 351 Gene3D G3DSA:3.30.1380.10 223 340 3.0E-19 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AMJ96_CH01945 249ccb7b165fe8a4eccd44aa17e28b9f 351 Pfam PF08291 Peptidase M15 227 327 1.3E-25 T 12-10-2018 IPR013230 Peptidase M15A, C-terminal KEGG: 00550+3.4.17.14|MetaCyc: PWY-6470 AMJ96_CH00635 6580a9da1148466ef273d2cf57089050 352 Gene3D G3DSA:3.90.180.10 5 327 3.6E-132 T 12-10-2018 AMJ96_CH00635 6580a9da1148466ef273d2cf57089050 352 Pfam PF00107 Zinc-binding dehydrogenase 175 300 2.7E-31 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AMJ96_CH00635 6580a9da1148466ef273d2cf57089050 352 Gene3D G3DSA:3.40.50.720 148 286 3.6E-132 T 12-10-2018 AMJ96_CH00635 6580a9da1148466ef273d2cf57089050 352 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 60 74 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AMJ96_CH00635 6580a9da1148466ef273d2cf57089050 352 SUPERFAMILY SSF50129 1 160 2.74E-55 T 12-10-2018 IPR011032 GroES-like superfamily AMJ96_CH00635 6580a9da1148466ef273d2cf57089050 352 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 131 3.6E-33 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AMJ96_CH00635 6580a9da1148466ef273d2cf57089050 352 SMART SM00829 10 305 4.3E-6 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AMJ96_CH00635 6580a9da1148466ef273d2cf57089050 352 SUPERFAMILY SSF51735 137 305 3.85E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00018 f7c99858d289b8ef322c0880d91f3e22 144 Pfam PF11014 Protein of unknown function (DUF2852) 8 128 2.0E-42 T 12-10-2018 IPR021273 Protein of unknown function DUF2852 AMJ96_PC00367 1094fe1a32e786981d0285972b35a1ee 367 Pfam PF06089 L-asparaginase II 8 345 3.6E-121 T 12-10-2018 IPR010349 L-asparaginase II AMJ96_CH00439 059a727e086814d1c4aa451fe1eade50 318 SUPERFAMILY SSF102405 79 310 3.97E-52 T 12-10-2018 AMJ96_CH00439 059a727e086814d1c4aa451fe1eade50 318 Pfam PF03641 Possible lysine decarboxylase 180 309 1.7E-32 T 12-10-2018 IPR031100 LOG family AMJ96_CH00439 059a727e086814d1c4aa451fe1eade50 318 Gene3D G3DSA:3.40.50.450 87 313 1.2E-56 T 12-10-2018 AMJ96_CH01108 409d09e44a752c655290137f22c71163 336 Pfam PF12277 Protein of unknown function (DUF3618) 8 51 3.6E-10 T 12-10-2018 IPR022062 Protein of unknown function DUF3618 AMJ96_CH01108 409d09e44a752c655290137f22c71163 336 Gene3D G3DSA:1.20.120.20 119 238 2.3E-5 T 12-10-2018 AMJ96_CH02849 94eb603a5d0d5e1b21c8e483a68053de 229 Gene3D G3DSA:3.10.180.10 15 125 1.1E-17 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH02849 94eb603a5d0d5e1b21c8e483a68053de 229 SUPERFAMILY SSF54593 22 165 1.18E-17 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH01046 48161121381e5d3551a0f9eb77729cd9 93 Pfam PF05360 yiaA/B two helix domain 12 64 2.5E-17 T 12-10-2018 IPR008024 YiaAB two helix AMJ96_CH03945 f9349a283d1b869fcd065133e2c217c5 202 SUPERFAMILY SSF46689 11 91 1.51E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH03945 f9349a283d1b869fcd065133e2c217c5 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 3.2E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH03945 f9349a283d1b869fcd065133e2c217c5 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 3.2E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_CH03945 f9349a283d1b869fcd065133e2c217c5 202 Gene3D G3DSA:1.10.357.10 60 201 4.3E-13 T 12-10-2018 AMJ96_CH03945 f9349a283d1b869fcd065133e2c217c5 202 SUPERFAMILY SSF48498 87 201 5.19E-11 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily AMJ96_CH03945 f9349a283d1b869fcd065133e2c217c5 202 Gene3D G3DSA:1.10.10.60 5 59 7.4E-18 T 12-10-2018 AMJ96_CH03945 f9349a283d1b869fcd065133e2c217c5 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 4.1E-15 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AMJ96_PB00311 14fbafda8c342b186f9e78cd263b00b3 105 Pfam PF04319 NifZ domain 14 85 1.6E-29 T 12-10-2018 IPR007415 Nitrogenase MoFe maturation protein, NifZ GO:0009399 AMJ96_PB00361 c5a3e870db67aeb7e6d9100a24891947 443 Pfam PF00535 Glycosyl transferase family 2 52 221 6.9E-36 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_PB00361 c5a3e870db67aeb7e6d9100a24891947 443 TIGRFAM TIGR04242 nodulat_NodC: chitooligosaccharide synthase NodC 2 396 9.1E-229 T 12-10-2018 IPR026463 Chitooligosaccharide synthase NodC AMJ96_PB00361 c5a3e870db67aeb7e6d9100a24891947 443 Pfam PF03142 Chitin synthase 238 392 8.0E-9 T 12-10-2018 AMJ96_PB00361 c5a3e870db67aeb7e6d9100a24891947 443 ProDom PD339107 ALGINATE ALG8 BIOSYNTHESIS TRANSFERASE TRANSMEMBRANE MEMBRANE 2.4.1.- GLYCOSYL GLYCOSYLTRANSFERASE PRECURSOR 54 266 2.0E-6 T 12-10-2018 AMJ96_PB00361 c5a3e870db67aeb7e6d9100a24891947 443 SUPERFAMILY SSF53448 47 308 2.81E-47 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_PB00361 c5a3e870db67aeb7e6d9100a24891947 443 Gene3D G3DSA:3.90.550.10 43 268 3.1E-32 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03468 f82f090bea426fad860a70d913fbef38 114 Pfam PF05957 Bacterial protein of unknown function (DUF883) 24 114 2.8E-14 T 12-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 AMJ96_CH04290 44f163754fda7dc34ffc78ed1b8bddb6 142 Pfam PF13924 Lipocalin-like domain 8 141 1.3E-35 T 12-10-2018 IPR024311 Lipocalin-like domain AMJ96_CH02208 63714e384370aa5f88143b0d57770bd0 169 SMART SM01006 5 52 1.6E-10 T 12-10-2018 IPR019432 Siderophore biosynthesis protein, conserved domain AMJ96_CH02208 63714e384370aa5f88143b0d57770bd0 169 SUPERFAMILY SSF55729 2 168 1.04E-24 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH02208 63714e384370aa5f88143b0d57770bd0 169 Gene3D G3DSA:3.40.630.30 1 168 2.2E-24 T 12-10-2018 AMJ96_CH02208 63714e384370aa5f88143b0d57770bd0 169 Pfam PF13523 Acetyltransferase (GNAT) domain 9 113 3.0E-16 T 12-10-2018 AMJ96_CH03436 8e087922ccc171c9dcc1a749e2ee3302 403 Gene3D G3DSA:3.10.560.10 89 262 5.6E-61 T 12-10-2018 AMJ96_CH03436 8e087922ccc171c9dcc1a749e2ee3302 403 Gene3D G3DSA:3.10.560.10 263 362 5.6E-61 T 12-10-2018 AMJ96_CH03436 8e087922ccc171c9dcc1a749e2ee3302 403 Pfam PF10531 SLBB domain 283 311 0.0078 T 12-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03436 8e087922ccc171c9dcc1a749e2ee3302 403 Pfam PF10531 SLBB domain 183 231 2.8E-6 T 12-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH03436 8e087922ccc171c9dcc1a749e2ee3302 403 Gene3D G3DSA:3.30.1950.10 93 180 5.6E-61 T 12-10-2018 AMJ96_CH03436 8e087922ccc171c9dcc1a749e2ee3302 403 Pfam PF02563 Polysaccharide biosynthesis/export protein 88 175 1.8E-11 T 12-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 AMJ96_CH01181 1b98a3d0b2afae0c18ddd681d0b9c5b2 473 Pfam PF07690 Major Facilitator Superfamily 33 357 1.1E-26 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH01181 1b98a3d0b2afae0c18ddd681d0b9c5b2 473 SUPERFAMILY SSF103473 18 459 4.84E-43 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH01181 1b98a3d0b2afae0c18ddd681d0b9c5b2 473 Gene3D G3DSA:1.20.1720.10 28 257 1.8E-26 T 12-10-2018 AMJ96_CH01181 1b98a3d0b2afae0c18ddd681d0b9c5b2 473 Gene3D G3DSA:1.20.1250.20 273 472 9.6E-10 T 12-10-2018 AMJ96_CH02797 cdcab9ee5237f3d14011c2523206e4dc 147 Gene3D G3DSA:3.30.530.20 1 145 9.5E-41 T 12-10-2018 IPR023393 START-like domain superfamily AMJ96_CH02797 cdcab9ee5237f3d14011c2523206e4dc 147 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 13 142 6.2E-28 T 12-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like AMJ96_CH02797 cdcab9ee5237f3d14011c2523206e4dc 147 SUPERFAMILY SSF55961 4 143 3.96E-43 T 12-10-2018 AMJ96_CH01986 3a17f24c36e0ba5085112f559f52f060 276 Pfam PF01148 Cytidylyltransferase family 6 255 2.1E-55 T 12-10-2018 AMJ96_CH01986 3a17f24c36e0ba5085112f559f52f060 276 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 216 242 - T 12-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 AMJ96_CH00795 8d4c7c69a74336a66c918871b2f0dc4e 281 Gene3D G3DSA:3.40.50.720 4 279 2.1E-68 T 12-10-2018 AMJ96_CH00795 8d4c7c69a74336a66c918871b2f0dc4e 281 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 213 2.2E-44 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_CH00795 8d4c7c69a74336a66c918871b2f0dc4e 281 SUPERFAMILY SSF51735 4 278 7.48E-70 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH00795 8d4c7c69a74336a66c918871b2f0dc4e 281 PRINTS PR01713 Nucleotide sugar epimerase signature 247 264 9.4E-6 T 12-10-2018 AMJ96_CH00795 8d4c7c69a74336a66c918871b2f0dc4e 281 PRINTS PR01713 Nucleotide sugar epimerase signature 185 200 9.4E-6 T 12-10-2018 AMJ96_CH00795 8d4c7c69a74336a66c918871b2f0dc4e 281 PRINTS PR01713 Nucleotide sugar epimerase signature 207 222 9.4E-6 T 12-10-2018 AMJ96_CH01397 327edb4029e63d24a174133f4eea9371 316 SUPERFAMILY SSF53448 4 218 3.05E-51 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH01397 327edb4029e63d24a174133f4eea9371 316 Gene3D G3DSA:3.90.550.10 1 239 1.2E-46 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH01397 327edb4029e63d24a174133f4eea9371 316 Pfam PF00535 Glycosyl transferase family 2 7 165 2.8E-31 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_CH03983 e873b1e75c39acca22739fc473f33b7e 235 SUPERFAMILY SSF51735 4 233 1.2E-56 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03983 e873b1e75c39acca22739fc473f33b7e 235 Gene3D G3DSA:3.40.50.720 2 234 2.1E-59 T 12-10-2018 AMJ96_CH03983 e873b1e75c39acca22739fc473f33b7e 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 2.1E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03983 e873b1e75c39acca22739fc473f33b7e 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.1E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03983 e873b1e75c39acca22739fc473f33b7e 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 199 219 2.1E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03983 e873b1e75c39acca22739fc473f33b7e 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.1E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03983 e873b1e75c39acca22739fc473f33b7e 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 2.1E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03983 e873b1e75c39acca22739fc473f33b7e 235 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 2.1E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03983 e873b1e75c39acca22739fc473f33b7e 235 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH03983 e873b1e75c39acca22739fc473f33b7e 235 Pfam PF00106 short chain dehydrogenase 5 193 5.0E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03983 e873b1e75c39acca22739fc473f33b7e 235 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 2.6E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03983 e873b1e75c39acca22739fc473f33b7e 235 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 2.6E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH03983 e873b1e75c39acca22739fc473f33b7e 235 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 2.6E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_PC00013 a96c638d80c682a71e82d8a6aa72aee3 179 Pfam PF03734 L,D-transpeptidase catalytic domain 42 177 1.8E-17 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMJ96_PC00013 a96c638d80c682a71e82d8a6aa72aee3 179 SUPERFAMILY SSF141523 37 178 6.8E-22 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_PC00013 a96c638d80c682a71e82d8a6aa72aee3 179 Gene3D G3DSA:2.40.440.10 35 177 1.9E-17 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH04149 f3264325c90e7cb3d9ed5569171bbedd 217 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 75 144 2.1E-9 T 12-10-2018 AMJ96_CH04149 f3264325c90e7cb3d9ed5569171bbedd 217 SUPERFAMILY SSF53335 33 183 7.32E-22 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH04149 f3264325c90e7cb3d9ed5569171bbedd 217 Gene3D G3DSA:3.40.50.150 26 213 6.3E-22 T 12-10-2018 AMJ96_PD00568 3efc34fba8e0fb4b80cde5ddbeb0bf2b 316 Pfam PF02653 Branched-chain amino acid transport system / permease component 42 304 1.1E-30 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_PD00116 96b4616829d585043fc0259866564b38 220 Pfam PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment 43 220 2.2E-80 T 12-10-2018 IPR015304 ZinT domain GO:0008270 AMJ96_PD00116 96b4616829d585043fc0259866564b38 220 Gene3D G3DSA:2.40.128.20 37 220 4.3E-76 T 12-10-2018 IPR012674 Calycin AMJ96_PD00116 96b4616829d585043fc0259866564b38 220 SUPERFAMILY SSF50814 40 220 7.4E-74 T 12-10-2018 IPR012674 Calycin AMJ96_PA00262 654bc9c98db236ddf2d4949b8419b40a 96 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 94 2.8E-17 T 12-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family AMJ96_PA00262 654bc9c98db236ddf2d4949b8419b40a 96 Gene3D G3DSA:3.30.2310.20 2 94 4.7E-13 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily AMJ96_PD00689 06483c9cba68c11e8c98dca0ad4b5c45 379 SUPERFAMILY SSF46785 32 83 4.06E-9 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PD00689 06483c9cba68c11e8c98dca0ad4b5c45 379 Gene3D G3DSA:3.30.420.40 189 370 5.0E-11 T 12-10-2018 AMJ96_PD00689 06483c9cba68c11e8c98dca0ad4b5c45 379 Gene3D G3DSA:3.30.420.40 99 182 5.0E-5 T 12-10-2018 AMJ96_PD00689 06483c9cba68c11e8c98dca0ad4b5c45 379 SUPERFAMILY SSF53067 104 368 3.82E-17 T 12-10-2018 AMJ96_PD00689 06483c9cba68c11e8c98dca0ad4b5c45 379 Gene3D G3DSA:1.10.10.10 22 96 5.5E-10 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PB00437 6ae6e3be6e8357d3b9036f107c03955d 404 SUPERFAMILY SSF52540 120 397 1.98E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PB00437 6ae6e3be6e8357d3b9036f107c03955d 404 TIGRFAM TIGR03453 partition_RepA: plasmid partitioning protein RepA 17 402 2.6E-189 T 12-10-2018 IPR017818 Plasmid partitioning protein, RepA AMJ96_PB00437 6ae6e3be6e8357d3b9036f107c03955d 404 Gene3D G3DSA:3.40.50.300 120 401 4.9E-68 T 12-10-2018 AMJ96_PB00437 6ae6e3be6e8357d3b9036f107c03955d 404 Pfam PF13614 AAA domain 120 303 1.1E-38 T 12-10-2018 IPR025669 AAA domain AMJ96_CH04376 89518d673ffc8ddfc7c5abe44dcaff12 264 Gene3D G3DSA:3.40.50.300 2 263 4.1E-76 T 12-10-2018 AMJ96_CH04376 89518d673ffc8ddfc7c5abe44dcaff12 264 SUPERFAMILY SSF52540 7 258 1.49E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04376 89518d673ffc8ddfc7c5abe44dcaff12 264 Pfam PF13614 AAA domain 7 183 5.0E-59 T 12-10-2018 IPR025669 AAA domain AMJ96_CH02434 f6da1bbd8f7817d4fc63a06fef5745ea 457 Pfam PF01474 Class-II DAHP synthetase family 5 441 6.9E-203 T 12-10-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AMJ96_CH02434 f6da1bbd8f7817d4fc63a06fef5745ea 457 TIGRFAM TIGR01358 DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 5 445 5.2E-215 T 12-10-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AMJ96_CH02434 f6da1bbd8f7817d4fc63a06fef5745ea 457 SUPERFAMILY SSF51569 2 445 1.54E-200 T 12-10-2018 AMJ96_CH02434 f6da1bbd8f7817d4fc63a06fef5745ea 457 Gene3D G3DSA:3.20.20.70 180 446 7.0E-106 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH03406 aa8bd68d10c0850232dba6b3d5abdb75 235 Pfam PF07812 TfuA-like protein 47 166 5.2E-42 T 12-10-2018 IPR012924 TfuA-like, core AMJ96_CH01649 df93c20ae20c8df79b943298894ba7b0 481 Pfam PF00361 Proton-conducting membrane transporter 125 420 4.0E-87 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01649 df93c20ae20c8df79b943298894ba7b0 481 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 13 459 9.6E-149 T 12-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 AMJ96_CH01649 df93c20ae20c8df79b943298894ba7b0 481 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 8 470 18.415 T 12-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 AMJ96_CH02164 8b4d9a7d964b66ee23d637d9c443a7b6 268 Pfam PF01904 Protein of unknown function DUF72 24 264 8.5E-57 T 12-10-2018 IPR002763 Protein of unknown function DUF72 AMJ96_CH02164 8b4d9a7d964b66ee23d637d9c443a7b6 268 SUPERFAMILY SSF117396 7 266 1.09E-70 T 12-10-2018 IPR036520 UPF0759 superfamily AMJ96_CH02164 8b4d9a7d964b66ee23d637d9c443a7b6 268 Gene3D G3DSA:3.20.20.410 1 268 5.5E-52 T 12-10-2018 IPR036520 UPF0759 superfamily AMJ96_PC00250 2c0232575a05f74b1a03e590d0b5269c 167 SUPERFAMILY SSF81342 5 160 4.79E-20 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AMJ96_PC00250 2c0232575a05f74b1a03e590d0b5269c 167 Pfam PF01292 Prokaryotic cytochrome b561 5 157 8.9E-20 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AMJ96_PD00037 80c81b7f3fcd0a122c781a5ba7236c47 352 Pfam PF02653 Branched-chain amino acid transport system / permease component 56 330 2.5E-48 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03245 973c58d4617e4cbd29aa2477549732cc 249 SUPERFAMILY SSF50475 15 245 3.11E-44 T 12-10-2018 AMJ96_CH03245 973c58d4617e4cbd29aa2477549732cc 249 Gene3D G3DSA:3.20.180.10 164 245 2.3E-10 T 12-10-2018 IPR037119 Haem oxygenase HugZ-like superfamily AMJ96_CH03245 973c58d4617e4cbd29aa2477549732cc 249 Pfam PF13883 Pyridoxamine 5'-phosphate oxidase 11 154 4.5E-7 T 12-10-2018 AMJ96_CH03245 973c58d4617e4cbd29aa2477549732cc 249 Gene3D G3DSA:2.30.110.10 1 161 2.1E-44 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMJ96_CH02955 01fff67fb66b6e9911d7e393167943ee 672 SUPERFAMILY SSF52540 134 514 5.91E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02955 01fff67fb66b6e9911d7e393167943ee 672 Gene3D G3DSA:3.40.50.300 126 222 9.4E-14 T 12-10-2018 AMJ96_CH02955 01fff67fb66b6e9911d7e393167943ee 672 Gene3D G3DSA:3.40.50.300 323 521 8.4E-40 T 12-10-2018 AMJ96_CH02955 01fff67fb66b6e9911d7e393167943ee 672 Pfam PF01935 Domain of unknown function DUF87 141 380 2.0E-50 T 12-10-2018 IPR002789 Helicase HerA, central domain AMJ96_CH00321 d256e18ae5cd4ad5d6ea3110c534b6db 385 Pfam PF08331 Domain of unknown function (DUF1730) 70 146 5.0E-21 T 12-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 AMJ96_CH00321 d256e18ae5cd4ad5d6ea3110c534b6db 385 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 199 210 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AMJ96_CH00321 d256e18ae5cd4ad5d6ea3110c534b6db 385 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 22 353 4.3E-131 T 12-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 AMJ96_CH00321 d256e18ae5cd4ad5d6ea3110c534b6db 385 Pfam PF13484 4Fe-4S double cluster binding domain 198 262 1.6E-18 T 12-10-2018 AMJ96_CH00321 d256e18ae5cd4ad5d6ea3110c534b6db 385 SUPERFAMILY SSF46548 145 262 5.07E-17 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AMJ96_PD00428 2a5245d726ff89cf5c319f70deb9003e 108 Pfam PF11154 Protein of unknown function (DUF2934) 5 39 7.5E-15 T 12-10-2018 IPR021327 Protein of unknown function DUF2934 AMJ96_CH03770 0b7edfa81fe685def3d1b7415f9ae305 360 SUPERFAMILY SSF81901 88 331 4.01E-45 T 12-10-2018 AMJ96_CH03770 0b7edfa81fe685def3d1b7415f9ae305 360 SMART SM00671 295 330 0.82 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH03770 0b7edfa81fe685def3d1b7415f9ae305 360 SMART SM00671 186 221 59.0 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH03770 0b7edfa81fe685def3d1b7415f9ae305 360 SMART SM00671 222 258 5.8 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH03770 0b7edfa81fe685def3d1b7415f9ae305 360 SMART SM00671 150 185 2.2E-6 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH03770 0b7edfa81fe685def3d1b7415f9ae305 360 SMART SM00671 114 149 1.2E-6 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH03770 0b7edfa81fe685def3d1b7415f9ae305 360 SMART SM00671 259 294 0.0028 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH03770 0b7edfa81fe685def3d1b7415f9ae305 360 Gene3D G3DSA:1.25.40.10 196 359 4.8E-30 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03770 0b7edfa81fe685def3d1b7415f9ae305 360 Gene3D G3DSA:1.25.40.10 81 195 3.9E-24 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH03770 0b7edfa81fe685def3d1b7415f9ae305 360 Pfam PF08238 Sel1 repeat 150 185 2.6E-6 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH03770 0b7edfa81fe685def3d1b7415f9ae305 360 Pfam PF08238 Sel1 repeat 114 149 8.1E-5 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH03770 0b7edfa81fe685def3d1b7415f9ae305 360 Pfam PF08238 Sel1 repeat 261 294 4.5E-5 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH03770 0b7edfa81fe685def3d1b7415f9ae305 360 Pfam PF08238 Sel1 repeat 207 220 69.0 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH03770 0b7edfa81fe685def3d1b7415f9ae305 360 Pfam PF08238 Sel1 repeat 296 325 0.0044 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH03770 0b7edfa81fe685def3d1b7415f9ae305 360 Pfam PF08238 Sel1 repeat 222 257 0.012 T 12-10-2018 IPR006597 Sel1-like repeat AMJ96_CH03053 c71b69d88e7974afb6333b64c61a1ada 466 SUPERFAMILY SSF141523 333 463 3.27E-29 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH03053 c71b69d88e7974afb6333b64c61a1ada 466 Pfam PF03734 L,D-transpeptidase catalytic domain 333 461 2.3E-18 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMJ96_CH03053 c71b69d88e7974afb6333b64c61a1ada 466 Gene3D G3DSA:2.40.440.10 276 466 1.1E-50 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_CH01524 328a5a364654def7037d192ea6c7044b 255 Pfam PF00106 short chain dehydrogenase 9 188 6.9E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01524 328a5a364654def7037d192ea6c7044b 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 2.4E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01524 328a5a364654def7037d192ea6c7044b 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 2.4E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01524 328a5a364654def7037d192ea6c7044b 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 2.4E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01524 328a5a364654def7037d192ea6c7044b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 6.3E-17 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01524 328a5a364654def7037d192ea6c7044b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 6.3E-17 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01524 328a5a364654def7037d192ea6c7044b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 6.3E-17 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01524 328a5a364654def7037d192ea6c7044b 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 6.3E-17 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH01524 328a5a364654def7037d192ea6c7044b 255 Gene3D G3DSA:3.40.50.720 6 255 1.5E-59 T 12-10-2018 AMJ96_CH01524 328a5a364654def7037d192ea6c7044b 255 SUPERFAMILY SSF51735 7 244 4.85E-52 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH03150 53ab31554fa6609df1f16eb225455918 95 Pfam PF09954 Uncharacterized protein conserved in bacteria (DUF2188) 6 67 3.6E-13 T 12-10-2018 IPR018691 Protein of unknown function DUF2188 AMJ96_PA00285 1ca5345a6eaa297d90ff0a2d44d49778 426 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 415 1.1E-115 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMJ96_PA00285 1ca5345a6eaa297d90ff0a2d44d49778 426 PIRSF PIRSF006066 1 425 2.6E-138 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMJ96_PA00285 1ca5345a6eaa297d90ff0a2d44d49778 426 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 419 4.7E-145 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMJ96_CH00633 b049810a25e9d244bd3793baadf446fe 258 Pfam PF09836 Putative DNA-binding domain 7 97 9.4E-27 T 12-10-2018 IPR018640 Putative DNA-binding domain, bacteria AMJ96_CH00633 b049810a25e9d244bd3793baadf446fe 258 Gene3D G3DSA:1.10.150.690 37 122 2.7E-6 T 12-10-2018 AMJ96_CH02677 7a0e978c66f8f737a535005a47ffa3a1 244 Pfam PF13276 HTH-like domain 45 98 7.9E-10 T 12-10-2018 IPR025948 HTH-like domain AMJ96_CH02677 7a0e978c66f8f737a535005a47ffa3a1 244 Pfam PF00665 Integrase core domain 115 207 5.4E-10 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMJ96_CH02677 7a0e978c66f8f737a535005a47ffa3a1 244 Gene3D G3DSA:3.30.420.10 113 215 3.4E-8 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_CH02677 7a0e978c66f8f737a535005a47ffa3a1 244 SUPERFAMILY SSF53098 113 192 2.28E-16 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_CH02838 75e8fdadf4f38790a906e14d8fc41f39 209 SUPERFAMILY SSF51735 16 134 2.57E-14 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_CH02838 75e8fdadf4f38790a906e14d8fc41f39 209 Pfam PF00106 short chain dehydrogenase 16 67 4.7E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AMJ96_CH02838 75e8fdadf4f38790a906e14d8fc41f39 209 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 16 44 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AMJ96_CH02838 75e8fdadf4f38790a906e14d8fc41f39 209 Gene3D G3DSA:3.40.50.720 15 118 3.5E-12 T 12-10-2018 AMJ96_CH03496 558ef1968ce20f136b6f675040e15d13 1010 SUPERFAMILY SSF52540 109 371 3.16E-9 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH03496 558ef1968ce20f136b6f675040e15d13 1010 Pfam PF04851 Type III restriction enzyme, res subunit 126 333 2.7E-11 T 12-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AMJ96_CH03496 558ef1968ce20f136b6f675040e15d13 1010 Gene3D G3DSA:3.40.50.300 126 375 1.7E-5 T 12-10-2018 AMJ96_CH03496 558ef1968ce20f136b6f675040e15d13 1010 SUPERFAMILY SSF52540 171 647 3.61E-7 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00270 e43b67bd6c5cab8f146d424194a283d6 271 Pfam PF12697 Alpha/beta hydrolase family 61 245 6.8E-13 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH00270 e43b67bd6c5cab8f146d424194a283d6 271 Gene3D G3DSA:3.40.50.1820 7 267 8.4E-68 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH00270 e43b67bd6c5cab8f146d424194a283d6 271 SUPERFAMILY SSF53474 25 256 2.13E-39 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH00727 0490ff03724e421c984db266223c408c 88 Pfam PF01313 Bacterial export proteins, family 3 6 77 4.3E-26 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMJ96_CH00727 0490ff03724e421c984db266223c408c 88 PIRSF PIRSF004669 1 88 2.5E-25 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMJ96_CH00727 0490ff03724e421c984db266223c408c 88 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 86 1.2E-28 T 12-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 AMJ96_CH00727 0490ff03724e421c984db266223c408c 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 2.4E-19 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMJ96_CH00727 0490ff03724e421c984db266223c408c 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 2.4E-19 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMJ96_CH00727 0490ff03724e421c984db266223c408c 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 2.4E-19 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AMJ96_CH03785 1e501cd795bda43c916e2bb16f8ae2e8 184 Pfam PF16157 Domain of unknown function (DUF4865) 1 180 2.7E-63 T 12-10-2018 IPR032349 Protein of unknown function DUF4865 AMJ96_CH02545 2b0d102107e23b7d9406268081a46ae5 105 Pfam PF00550 Phosphopantetheine attachment site 19 71 5.8E-10 T 12-10-2018 IPR009081 Phosphopantetheine binding ACP domain AMJ96_CH02545 2b0d102107e23b7d9406268081a46ae5 105 SUPERFAMILY SSF47336 12 73 2.88E-15 T 12-10-2018 IPR036736 ACP-like superfamily AMJ96_CH02545 2b0d102107e23b7d9406268081a46ae5 105 ProSitePatterns PS00012 Phosphopantetheine attachment site. 45 60 - T 12-10-2018 IPR006162 Phosphopantetheine attachment site AMJ96_CH02545 2b0d102107e23b7d9406268081a46ae5 105 Gene3D G3DSA:1.10.1200.10 14 105 1.4E-29 T 12-10-2018 IPR036736 ACP-like superfamily AMJ96_CH00910 c09d55e2d800e6657dca50de0ae6bac5 162 Pfam PF04463 Protein of unknown function (DUF523) 5 150 1.4E-40 T 12-10-2018 IPR007553 Domain of unknown function DUF523 AMJ96_PD00555 546467ae6c43b1aa37fce232643d3155 224 Pfam PF03734 L,D-transpeptidase catalytic domain 72 203 1.3E-17 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AMJ96_PD00555 546467ae6c43b1aa37fce232643d3155 224 Gene3D G3DSA:2.40.440.10 44 223 1.4E-43 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_PD00555 546467ae6c43b1aa37fce232643d3155 224 SUPERFAMILY SSF141523 66 204 3.14E-31 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_PD00414 15ece56c7d0405ad8897204737ff4846 617 Gene3D G3DSA:2.70.98.70 404 570 3.0E-17 T 12-10-2018 AMJ96_PD00414 15ece56c7d0405ad8897204737ff4846 617 Gene3D G3DSA:1.50.10.100 36 379 6.7E-35 T 12-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 AMJ96_PD00414 15ece56c7d0405ad8897204737ff4846 617 SUPERFAMILY SSF48230 101 334 8.61E-11 T 12-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 AMJ96_PD00414 15ece56c7d0405ad8897204737ff4846 617 Pfam PF07940 Heparinase II/III-like protein 397 549 4.0E-18 T 12-10-2018 IPR012480 Heparinase II/III-like GO:0016829 AMJ96_PD00178 6be652325c014079f1fc489a4b3127d3 348 SUPERFAMILY SSF51735 7 321 2.83E-80 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00178 6be652325c014079f1fc489a4b3127d3 348 Gene3D G3DSA:3.40.50.720 9 326 4.7E-97 T 12-10-2018 AMJ96_PD00178 6be652325c014079f1fc489a4b3127d3 348 Pfam PF01370 NAD dependent epimerase/dehydratase family 13 239 4.3E-45 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_PC00012 2913adf5c69d3063a4c08821dda0aab5 235 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 50 200 8.2E-52 T 12-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMJ96_PC00012 2913adf5c69d3063a4c08821dda0aab5 235 Pfam PF01625 Peptide methionine sulfoxide reductase 51 201 6.2E-57 T 12-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMJ96_PC00012 2913adf5c69d3063a4c08821dda0aab5 235 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 49 209 35.684 T 12-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMJ96_PC00012 2913adf5c69d3063a4c08821dda0aab5 235 SUPERFAMILY SSF55068 43 214 1.96E-67 T 12-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMJ96_PC00012 2913adf5c69d3063a4c08821dda0aab5 235 Gene3D G3DSA:3.30.1060.10 25 210 6.4E-63 T 12-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AMJ96_CH01403 1ec691610e152c26999f80b56eaa017a 350 Gene3D G3DSA:3.90.25.10 186 309 1.1E-106 T 12-10-2018 AMJ96_CH01403 1ec691610e152c26999f80b56eaa017a 350 Gene3D G3DSA:3.40.50.720 6 296 1.1E-106 T 12-10-2018 AMJ96_CH01403 1ec691610e152c26999f80b56eaa017a 350 Pfam PF16363 GDP-mannose 4,6 dehydratase 8 305 2.4E-54 T 12-10-2018 IPR016040 NAD(P)-binding domain AMJ96_CH01403 1ec691610e152c26999f80b56eaa017a 350 SUPERFAMILY SSF51735 3 310 1.45E-89 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PA00268 33ea25eca58f297984e7028d10477e1f 294 SUPERFAMILY SSF161098 17 294 2.43E-60 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00268 33ea25eca58f297984e7028d10477e1f 294 Gene3D G3DSA:1.10.3720.10 12 285 6.1E-50 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00268 33ea25eca58f297984e7028d10477e1f 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 287 1.5E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PA00046 cf47a16e9a2ebe63528085b8c3d0286a 83 Gene3D G3DSA:1.10.8.1250 12 83 3.1E-5 T 12-10-2018 IPR038296 Antitoxin ParD superfamily AMJ96_PA00046 cf47a16e9a2ebe63528085b8c3d0286a 83 SUPERFAMILY SSF47598 6 46 2.0E-5 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMJ96_CH02151 415cfdd67e4e2cae03168fc102142755 235 Pfam PF04367 Protein of unknown function (DUF502) 70 177 2.2E-35 T 12-10-2018 IPR007462 Protein of unknown function DUF502 AMJ96_CH03553 7ea8e9b6031038718873daeeed8d3ed4 386 ProDom PD936484 POLYPROTEIN GLYCOPROTEIN M G2 TRANSMEMBRANE NONSTRUCTURAL MEMBRANE CONTAINS: PRECURSOR SIGNAL 65 251 1.0E-4 T 12-10-2018 AMJ96_CH01785 4e85f60512476836c96995891d609277 193 Pfam PF07886 BA14K-like protein 104 132 1.0E-13 T 12-10-2018 IPR012413 BA14k family GO:0009405 AMJ96_CH01785 4e85f60512476836c96995891d609277 193 Pfam PF07886 BA14K-like protein 156 184 8.8E-14 T 12-10-2018 IPR012413 BA14k family GO:0009405 AMJ96_PD00129 2622143fb64338e0b6dcd615457237c6 54 PIRSF PIRSF036466 1 54 1.6E-24 T 12-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 AMJ96_PD00129 2622143fb64338e0b6dcd615457237c6 54 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 48 19.69 T 12-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 AMJ96_PD00129 2622143fb64338e0b6dcd615457237c6 54 Pfam PF07043 Protein of unknown function (DUF1328) 6 44 5.5E-17 T 12-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 AMJ96_CH00718 2be83fd97d66485d1a22417c980a9637 479 Gene3D G3DSA:3.30.750.140 302 434 5.1E-7 T 12-10-2018 IPR038610 FliK-like, C-terminal domain superfamily AMJ96_CH00718 2be83fd97d66485d1a22417c980a9637 479 Pfam PF02120 Flagellar hook-length control protein FliK 336 406 3.0E-14 T 12-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal AMJ96_PB00032 54397a3af7c46303da683f2b2881cbfb 133 Pfam PF03640 Secreted repeat of unknown function 24 46 8.2E-9 T 12-10-2018 IPR005297 Lipoprotein repeat AMJ96_CH03092 eab0b815e8e372eefa8993fc2f0b0ef7 122 SMART SM00448 7 117 5.8E-15 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH03092 eab0b815e8e372eefa8993fc2f0b0ef7 122 SUPERFAMILY SSF52172 7 121 8.54E-25 T 12-10-2018 IPR011006 CheY-like superfamily AMJ96_CH03092 eab0b815e8e372eefa8993fc2f0b0ef7 122 Gene3D G3DSA:3.40.50.2300 4 122 2.3E-24 T 12-10-2018 AMJ96_CH03092 eab0b815e8e372eefa8993fc2f0b0ef7 122 Pfam PF00072 Response regulator receiver domain 9 117 1.4E-16 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AMJ96_CH01902 745aa575743cb21d2d36d24ed82293f5 267 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 7 259 8.4E-12 T 12-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase AMJ96_CH01902 745aa575743cb21d2d36d24ed82293f5 267 Gene3D G3DSA:3.60.10.10 1 267 6.3E-27 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMJ96_CH01902 745aa575743cb21d2d36d24ed82293f5 267 SUPERFAMILY SSF56219 1 266 9.68E-30 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMJ96_CH03731 d93bcc232e4d2059b4dcb095611f6dcc 188 Gene3D G3DSA:1.10.260.40 1 65 4.9E-12 T 12-10-2018 AMJ96_CH03731 d93bcc232e4d2059b4dcb095611f6dcc 188 Pfam PF01381 Helix-turn-helix 8 55 1.6E-10 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH03731 d93bcc232e4d2059b4dcb095611f6dcc 188 SUPERFAMILY SSF47413 3 56 2.57E-11 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH03731 d93bcc232e4d2059b4dcb095611f6dcc 188 SMART SM00530 7 61 2.2E-9 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AMJ96_CH03403 d5dcc48facba4dad42c07b8f18132c2a 369 Pfam PF00535 Glycosyl transferase family 2 13 135 3.9E-35 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_CH03403 d5dcc48facba4dad42c07b8f18132c2a 369 Gene3D G3DSA:3.90.550.10 3 244 7.7E-65 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH03403 d5dcc48facba4dad42c07b8f18132c2a 369 SUPERFAMILY SSF53448 11 231 5.46E-60 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_PD00422 a93198a706d0c33ccd27f08791ec4bb9 616 PIRSF PIRSF014753 1 601 5.6E-195 T 12-10-2018 IPR016624 Uncharacterised conserved protein UCP014753 AMJ96_PD00422 a93198a706d0c33ccd27f08791ec4bb9 616 Pfam PF10022 Uncharacterized protein conserved in bacteria (DUF2264) 18 358 1.8E-125 T 12-10-2018 IPR016624 Uncharacterised conserved protein UCP014753 AMJ96_CH00490 ad033c10532ffb0141e07f559361c8a5 392 Pfam PF00990 Diguanylate cyclase, GGDEF domain 221 373 3.6E-38 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH00490 ad033c10532ffb0141e07f559361c8a5 392 SUPERFAMILY SSF55073 226 376 1.1E-43 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH00490 ad033c10532ffb0141e07f559361c8a5 392 Gene3D G3DSA:3.30.70.270 216 381 2.1E-51 T 12-10-2018 AMJ96_CH00490 ad033c10532ffb0141e07f559361c8a5 392 SMART SM00267 209 377 7.9E-52 T 12-10-2018 IPR000160 GGDEF domain AMJ96_CH00490 ad033c10532ffb0141e07f559361c8a5 392 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 220 377 1.5E-41 T 12-10-2018 IPR000160 GGDEF domain AMJ96_PD00228 49fb99b5f114695f2b7fdcca34c06937 420 Gene3D G3DSA:3.40.190.10 56 377 1.4E-62 T 12-10-2018 AMJ96_PD00228 49fb99b5f114695f2b7fdcca34c06937 420 SUPERFAMILY SSF53850 23 417 4.49E-64 T 12-10-2018 AMJ96_PD00228 49fb99b5f114695f2b7fdcca34c06937 420 Pfam PF13416 Bacterial extracellular solute-binding protein 47 351 3.6E-28 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PD00228 49fb99b5f114695f2b7fdcca34c06937 420 Gene3D G3DSA:3.40.190.10 151 404 1.4E-62 T 12-10-2018 AMJ96_CH02250 20855c6072dfbf396cf2873452fe117b 152 Gene3D G3DSA:3.40.630.30 1 151 7.4E-40 T 12-10-2018 AMJ96_CH02250 20855c6072dfbf396cf2873452fe117b 152 SUPERFAMILY SSF55729 30 151 9.96E-27 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH02250 20855c6072dfbf396cf2873452fe117b 152 Pfam PF00583 Acetyltransferase (GNAT) family 43 129 1.5E-14 T 12-10-2018 IPR000182 GNAT domain AMJ96_PA00041 ee540addadde5b81e78b7edb397260db 313 Gene3D G3DSA:3.90.25.10 181 240 1.1E-11 T 12-10-2018 AMJ96_PA00041 ee540addadde5b81e78b7edb397260db 313 SUPERFAMILY SSF51735 1 312 2.65E-75 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PA00041 ee540addadde5b81e78b7edb397260db 313 Gene3D G3DSA:3.90.25.10 241 312 3.5E-20 T 12-10-2018 AMJ96_PA00041 ee540addadde5b81e78b7edb397260db 313 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 228 3.5E-53 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AMJ96_PA00041 ee540addadde5b81e78b7edb397260db 313 Gene3D G3DSA:3.40.50.720 1 180 1.8E-45 T 12-10-2018 AMJ96_CH01961 ace3dc1e6ab490b00c7adeca5f3c271c 341 Gene3D G3DSA:3.40.190.10 30 241 1.4E-49 T 12-10-2018 AMJ96_CH01961 ace3dc1e6ab490b00c7adeca5f3c271c 341 SUPERFAMILY SSF53850 26 255 5.67E-47 T 12-10-2018 AMJ96_CH01961 ace3dc1e6ab490b00c7adeca5f3c271c 341 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 58 71 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site AMJ96_CH01961 ace3dc1e6ab490b00c7adeca5f3c271c 341 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 14 313 2.5E-80 T 12-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 AMJ96_CH01961 ace3dc1e6ab490b00c7adeca5f3c271c 341 SMART SM00062 35 264 2.1E-57 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH01961 ace3dc1e6ab490b00c7adeca5f3c271c 341 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 250 1.0E-27 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AMJ96_CH01961 ace3dc1e6ab490b00c7adeca5f3c271c 341 Gene3D G3DSA:3.40.190.10 122 227 1.4E-49 T 12-10-2018 AMJ96_CH03575 c1a38a3c1be820fd29f8e9bef33f2b7d 392 Gene3D G3DSA:1.10.287.470 93 166 3.5E-94 T 12-10-2018 AMJ96_CH03575 c1a38a3c1be820fd29f8e9bef33f2b7d 392 SUPERFAMILY SSF111369 48 293 1.44E-64 T 12-10-2018 AMJ96_CH03575 c1a38a3c1be820fd29f8e9bef33f2b7d 392 Gene3D G3DSA:2.40.50.100 58 201 3.5E-94 T 12-10-2018 AMJ96_CH03575 c1a38a3c1be820fd29f8e9bef33f2b7d 392 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 34 369 1.7E-89 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AMJ96_CH03575 c1a38a3c1be820fd29f8e9bef33f2b7d 392 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 60 287 5.3E-15 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AMJ96_CH03575 c1a38a3c1be820fd29f8e9bef33f2b7d 392 Gene3D G3DSA:2.40.30.170 47 298 3.5E-94 T 12-10-2018 AMJ96_CH03575 c1a38a3c1be820fd29f8e9bef33f2b7d 392 Gene3D G3DSA:2.40.420.20 299 366 3.5E-94 T 12-10-2018 AMJ96_PC00247 26b15c42154badbffc4c63b2d1980c4d 488 Gene3D G3DSA:1.20.1600.10 36 476 2.4E-38 T 12-10-2018 AMJ96_PC00247 26b15c42154badbffc4c63b2d1980c4d 488 SUPERFAMILY SSF56954 6 464 1.96E-50 T 12-10-2018 AMJ96_PC00247 26b15c42154badbffc4c63b2d1980c4d 488 Pfam PF02321 Outer membrane efflux protein 282 459 2.1E-10 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMJ96_PC00247 26b15c42154badbffc4c63b2d1980c4d 488 Pfam PF02321 Outer membrane efflux protein 77 254 4.1E-10 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 AMJ96_PB00004 d8bf237499f8ba70e77c58af12f6b411 322 SUPERFAMILY SSF46689 7 111 1.29E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_PB00004 d8bf237499f8ba70e77c58af12f6b411 322 Gene3D G3DSA:1.10.260.40 78 125 1.9E-5 T 12-10-2018 AMJ96_PB00004 d8bf237499f8ba70e77c58af12f6b411 322 Pfam PF13011 leucine-zipper of insertion element IS481 1 85 5.7E-19 T 12-10-2018 IPR024967 DNA-binding domain, IS481-type AMJ96_PB00004 d8bf237499f8ba70e77c58af12f6b411 322 SUPERFAMILY SSF53098 131 310 9.99E-34 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_PB00004 d8bf237499f8ba70e77c58af12f6b411 322 Gene3D G3DSA:3.30.420.10 164 297 3.6E-23 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_PB00004 d8bf237499f8ba70e77c58af12f6b411 322 Pfam PF00665 Integrase core domain 130 269 2.2E-28 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMJ96_CH02406 83cc087844f6402ee2919c222e6a9af2 186 Pfam PF00857 Isochorismatase family 4 156 4.9E-34 T 12-10-2018 IPR000868 Isochorismatase-like GO:0003824 AMJ96_CH02406 83cc087844f6402ee2919c222e6a9af2 186 SUPERFAMILY SSF52499 2 165 1.13E-43 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMJ96_CH02406 83cc087844f6402ee2919c222e6a9af2 186 Gene3D G3DSA:3.40.50.850 1 179 2.4E-43 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 AMJ96_PC00078 8b0cdf6e5b25fda8530d20027e63203e 131 Pfam PF07681 DoxX 12 87 8.9E-6 T 12-10-2018 IPR032808 DoxX family AMJ96_CH01208 09ca57fbc54a68fae24736ea9ea1d6c5 307 Pfam PF00326 Prolyl oligopeptidase family 128 256 7.9E-13 T 12-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AMJ96_CH01208 09ca57fbc54a68fae24736ea9ea1d6c5 307 Gene3D G3DSA:3.40.50.1820 72 306 6.6E-34 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH01208 09ca57fbc54a68fae24736ea9ea1d6c5 307 SUPERFAMILY SSF53474 56 290 5.59E-34 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PD00510 67fb7d958e6429cad70320d49e50ec8f 176 Pfam PF07811 TadE-like protein 19 59 2.6E-9 T 12-10-2018 IPR012495 TadE-like AMJ96_PD00621 0da0bba0993b1ce8ce0f416ce9ff4751 328 SUPERFAMILY SSF161098 96 314 2.49E-14 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00621 0da0bba0993b1ce8ce0f416ce9ff4751 328 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 121 326 6.9E-30 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00621 0da0bba0993b1ce8ce0f416ce9ff4751 328 Gene3D G3DSA:1.10.3720.10 84 327 4.9E-16 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PB00190 8388531aa68be1614b90b47e45034274 112 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 9 91 2.7E-28 T 12-10-2018 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB AMJ96_PA00284 020fd4ed24db382c59f7f858ccffd48d 187 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 23 148 2.0E-23 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ AMJ96_PC00299 a557d693fea7e4a1745c12fe4f1b6b58 333 Pfam PF02653 Branched-chain amino acid transport system / permease component 36 304 3.2E-45 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_PD00075 3223ebc875e939ea6e6466d28773c640 468 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 5 248 3.8E-73 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMJ96_PD00075 3223ebc875e939ea6e6466d28773c640 468 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 255 455 2.7E-70 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AMJ96_PD00075 3223ebc875e939ea6e6466d28773c640 468 PIRSF PIRSF006066 1 252 8.0E-68 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMJ96_PD00075 3223ebc875e939ea6e6466d28773c640 468 PIRSF PIRSF006066 248 467 6.9E-67 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 AMJ96_CH03718 5ef3cc68888265aa26e9aedb457788a0 137 SUPERFAMILY SSF88723 1 132 1.51E-14 T 12-10-2018 IPR029060 PIN-like domain superfamily AMJ96_CH03718 5ef3cc68888265aa26e9aedb457788a0 137 Pfam PF01850 PIN domain 4 118 7.1E-7 T 12-10-2018 IPR002716 PIN domain AMJ96_CH03718 5ef3cc68888265aa26e9aedb457788a0 137 Gene3D G3DSA:3.40.50.1010 3 130 5.5E-9 T 12-10-2018 AMJ96_CH02424 7c05db9e33a18a2a4d3adbb700c36206 365 Pfam PF11064 Protein of unknown function (DUF2865) 191 300 1.2E-30 T 12-10-2018 IPR021293 Protein of unknown function DUF2865 AMJ96_PD00424 7de0e3fcbb6e5981fce06f41c39d7a9d 140 Gene3D G3DSA:3.40.50.1010 1 129 4.5E-30 T 12-10-2018 AMJ96_PD00424 7de0e3fcbb6e5981fce06f41c39d7a9d 140 Pfam PF01850 PIN domain 4 125 2.2E-11 T 12-10-2018 IPR002716 PIN domain AMJ96_PD00424 7de0e3fcbb6e5981fce06f41c39d7a9d 140 SUPERFAMILY SSF88723 3 134 5.61E-17 T 12-10-2018 IPR029060 PIN-like domain superfamily AMJ96_PA00243 0453098d1c11f0f76db048ea2e405f6d 273 SUPERFAMILY SSF52540 6 233 2.19E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PA00243 0453098d1c11f0f76db048ea2e405f6d 273 Pfam PF00005 ABC transporter 23 178 2.6E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AMJ96_PA00243 0453098d1c11f0f76db048ea2e405f6d 273 SMART SM00382 32 235 1.5E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PA00243 0453098d1c11f0f76db048ea2e405f6d 273 Gene3D G3DSA:3.40.50.300 5 268 6.5E-52 T 12-10-2018 AMJ96_CH00595 c16266e39936df075b669eca8bfc3fc1 81 Pfam PF06169 Protein of unknown function (DUF982) 9 78 2.3E-22 T 12-10-2018 IPR010385 Protein of unknown function DUF982 AMJ96_PD00560 b63b41d2760c57e622bb077b806d2572 294 Pfam PF12146 Serine aminopeptidase, S33 40 240 3.3E-14 T 12-10-2018 IPR022742 Serine aminopeptidase, S33 AMJ96_PD00560 b63b41d2760c57e622bb077b806d2572 294 Gene3D G3DSA:3.40.50.1820 28 275 3.2E-32 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PD00560 b63b41d2760c57e622bb077b806d2572 294 SUPERFAMILY SSF53474 14 271 1.39E-30 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PD00083 773ebb8875a4d6579b8a447a4cc7576c 242 Gene3D G3DSA:3.10.490.10 50 235 1.6E-6 T 12-10-2018 AMJ96_PD00083 773ebb8875a4d6579b8a447a4cc7576c 242 SUPERFAMILY SSF110857 62 148 8.44E-6 T 12-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily AMJ96_PD00083 773ebb8875a4d6579b8a447a4cc7576c 242 Pfam PF04752 ChaC-like protein 62 231 3.0E-38 T 12-10-2018 IPR006840 Glutathione-specific gamma-glutamylcyclotransferase GO:0003839|GO:0006751 KEGG: 00480+4.3.2.7|MetaCyc: PWY-7942|Reactome: R-HSA-174403 AMJ96_CH02420 f54fdf9afe9ea051ef3f11bd84c56e5e 165 Gene3D G3DSA:3.30.420.10 3 162 2.7E-37 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_CH02420 f54fdf9afe9ea051ef3f11bd84c56e5e 165 SUPERFAMILY SSF53098 12 159 5.44E-32 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_CH02420 f54fdf9afe9ea051ef3f11bd84c56e5e 165 Pfam PF00075 RNase H 12 156 5.1E-27 T 12-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 AMJ96_CH01412 58c541a78e3cc81417c9c564a5fcd46a 405 PIRSF PIRSF000390 4 390 9.7E-110 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMJ96_CH01412 58c541a78e3cc81417c9c564a5fcd46a 405 SUPERFAMILY SSF53383 8 387 3.44E-109 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase AMJ96_CH01412 58c541a78e3cc81417c9c564a5fcd46a 405 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 16 383 3.2E-113 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AMJ96_CH01412 58c541a78e3cc81417c9c564a5fcd46a 405 Gene3D G3DSA:3.90.1150.10 264 385 5.1E-22 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 AMJ96_CH01412 58c541a78e3cc81417c9c564a5fcd46a 405 Gene3D G3DSA:3.40.640.10 2 261 6.5E-100 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 AMJ96_PD00504 ee18b45ac9a2ba78feb785a2b47a60f4 173 Pfam PF13628 Domain of unknown function (DUF4142) 27 168 5.8E-38 T 12-10-2018 IPR025419 Domain of unknown function DUF4142 AMJ96_PB00323 5ddb95ff4ba296264f118b6eea4f622a 94 Pfam PF13817 IS66 C-terminal element 45 82 5.0E-16 T 12-10-2018 IPR039552 Transposase IS66, C-terminal AMJ96_PD00081 64efc79d14ac40703fa410a0a9fc5806 134 SUPERFAMILY SSF81442 37 120 1.83E-8 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00606 8384ffb9088e5a428af613512f7e9b2f 282 Gene3D G3DSA:1.10.3720.10 2 272 8.6E-68 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00606 8384ffb9088e5a428af613512f7e9b2f 282 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 272 3.1E-20 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00606 8384ffb9088e5a428af613512f7e9b2f 282 SUPERFAMILY SSF161098 9 282 6.92E-77 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PB00318 38dfdb212f26f5796685abbd6cd40289 326 SUPERFAMILY SSF53098 139 307 8.22E-37 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_PB00318 38dfdb212f26f5796685abbd6cd40289 326 Gene3D G3DSA:3.30.420.10 138 311 1.2E-24 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_PB00318 38dfdb212f26f5796685abbd6cd40289 326 Pfam PF00665 Integrase core domain 142 259 5.1E-21 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMJ96_CH03838 7aebfdc9ea70b3cad26c543a162bd471 292 SUPERFAMILY SSF54001 139 279 5.19E-40 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMJ96_CH03838 7aebfdc9ea70b3cad26c543a162bd471 292 Gene3D G3DSA:3.10.620.30 102 281 1.5E-46 T 12-10-2018 AMJ96_CH03838 7aebfdc9ea70b3cad26c543a162bd471 292 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 83 1.4E-15 T 12-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal AMJ96_CH03838 7aebfdc9ea70b3cad26c543a162bd471 292 Pfam PF01841 Transglutaminase-like superfamily 134 245 3.4E-20 T 12-10-2018 IPR002931 Transglutaminase-like AMJ96_CH03838 7aebfdc9ea70b3cad26c543a162bd471 292 SMART SM00460 176 247 6.3E-15 T 12-10-2018 IPR002931 Transglutaminase-like AMJ96_CH00756 8e7a36b1608c31be2a1f217f2e3dacd8 429 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 14 243 5.0E-93 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AMJ96_CH00756 8e7a36b1608c31be2a1f217f2e3dacd8 429 Pfam PF00463 Isocitrate lyase family 15 243 5.9E-51 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AMJ96_CH00756 8e7a36b1608c31be2a1f217f2e3dacd8 429 PIRSF PIRSF001362 1 427 6.7E-232 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AMJ96_CH00756 8e7a36b1608c31be2a1f217f2e3dacd8 429 Gene3D G3DSA:3.20.20.60 1 407 1.5E-183 T 12-10-2018 AMJ96_CH00756 8e7a36b1608c31be2a1f217f2e3dacd8 429 ProSitePatterns PS00161 Isocitrate lyase signature. 183 188 - T 12-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 AMJ96_CH00756 8e7a36b1608c31be2a1f217f2e3dacd8 429 SUPERFAMILY SSF51621 10 424 3.23E-147 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMJ96_CH02942 35480e59c21f1351d4a81770eb8efeaa 126 PIRSF PIRSF029720 1 126 3.4E-53 T 12-10-2018 IPR014558 Uncharacterised conserved lipoprotein AMJ96_CH02942 35480e59c21f1351d4a81770eb8efeaa 126 Pfam PF03640 Secreted repeat of unknown function 82 125 6.7E-20 T 12-10-2018 IPR005297 Lipoprotein repeat AMJ96_CH02942 35480e59c21f1351d4a81770eb8efeaa 126 Pfam PF03640 Secreted repeat of unknown function 29 70 1.0E-15 T 12-10-2018 IPR005297 Lipoprotein repeat AMJ96_CH03106 9981b9754ca8bc578aad3376c1351c89 132 Pfam PF04248 Domain of unknown function (DUF427) 25 116 4.7E-34 T 12-10-2018 IPR007361 Domain of unknown function DUF427 AMJ96_CH03106 9981b9754ca8bc578aad3376c1351c89 132 Gene3D G3DSA:2.170.150.40 10 122 1.8E-39 T 12-10-2018 AMJ96_CH02198 a877fe64edf3319adff360d1c819de0a 232 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 117 4.1E-21 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_CH02198 a877fe64edf3319adff360d1c819de0a 232 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 40 219 1.2E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02198 a877fe64edf3319adff360d1c819de0a 232 Gene3D G3DSA:1.10.3720.10 1 223 9.6E-45 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH02198 a877fe64edf3319adff360d1c819de0a 232 SUPERFAMILY SSF161098 13 214 1.7E-34 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00305 8ccef625904b742f32ab3dfb4144e6e5 326 Pfam PF02653 Branched-chain amino acid transport system / permease component 44 308 2.1E-35 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH00679 e3fddd7ad7607decc2c33ba4b87f47fd 155 Gene3D G3DSA:2.30.30.40 17 141 1.6E-38 T 12-10-2018 AMJ96_CH00679 e3fddd7ad7607decc2c33ba4b87f47fd 155 Pfam PF01584 CheW-like domain 15 150 2.2E-36 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMJ96_CH00679 e3fddd7ad7607decc2c33ba4b87f47fd 155 Gene3D G3DSA:2.40.50.180 33 142 1.6E-38 T 12-10-2018 AMJ96_CH00679 e3fddd7ad7607decc2c33ba4b87f47fd 155 SUPERFAMILY SSF50341 8 150 3.14E-39 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMJ96_CH00679 e3fddd7ad7607decc2c33ba4b87f47fd 155 SMART SM00260 10 147 3.1E-44 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 AMJ96_CH02485 0e5ddf0a8a765a998561b9f9c7ec1b4a 241 Pfam PF10028 Predicted integral membrane protein (DUF2270) 34 223 1.6E-71 T 12-10-2018 IPR014470 Uncharacterised conserved protein UCP01500 AMJ96_CH02485 0e5ddf0a8a765a998561b9f9c7ec1b4a 241 PIRSF PIRSF015000 1 241 1.2E-91 T 12-10-2018 IPR014470 Uncharacterised conserved protein UCP01500 AMJ96_CH03387 e5055224628a6d67acccd64f91911c43 95 Pfam PF06169 Protein of unknown function (DUF982) 19 89 6.8E-20 T 12-10-2018 IPR010385 Protein of unknown function DUF982 AMJ96_PC00404 c883f4f5cd2bad9c3fcf1bcbb0e00e67 304 SUPERFAMILY SSF103481 190 288 5.1E-8 T 12-10-2018 AMJ96_PC00404 c883f4f5cd2bad9c3fcf1bcbb0e00e67 304 Pfam PF00892 EamA-like transporter family 149 285 1.3E-13 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_PC00404 c883f4f5cd2bad9c3fcf1bcbb0e00e67 304 Pfam PF00892 EamA-like transporter family 5 135 7.4E-12 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_PC00404 c883f4f5cd2bad9c3fcf1bcbb0e00e67 304 SUPERFAMILY SSF103481 36 135 2.75E-12 T 12-10-2018 AMJ96_CH04051 5dff15fcdda4c16043f63d0dbab98066 338 Pfam PF09898 Uncharacterized protein conserved in bacteria (DUF2125) 36 336 1.7E-68 T 12-10-2018 IPR018666 Protein of unknown function DUF2125 AMJ96_PD00650 294b63f0fdf0dc2d18f0f07b0a8faef2 352 SUPERFAMILY SSF53850 27 350 1.74E-43 T 12-10-2018 AMJ96_PD00650 294b63f0fdf0dc2d18f0f07b0a8faef2 352 Gene3D G3DSA:3.40.190.10 31 350 2.5E-107 T 12-10-2018 AMJ96_PD00650 294b63f0fdf0dc2d18f0f07b0a8faef2 352 Pfam PF13416 Bacterial extracellular solute-binding protein 49 309 6.6E-22 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PD00650 294b63f0fdf0dc2d18f0f07b0a8faef2 352 Gene3D G3DSA:3.40.190.10 135 259 2.5E-107 T 12-10-2018 AMJ96_PC00410 be7dd5dc9c6753d500a61b414dd4799b 162 Gene3D G3DSA:2.60.120.10 32 129 5.6E-12 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_PC00410 be7dd5dc9c6753d500a61b414dd4799b 162 PIRSF PIRSF019307 1 162 3.8E-61 T 12-10-2018 IPR014500 Uncharacterised conserved protein UCP019307, cupin-type AMJ96_PC00410 be7dd5dc9c6753d500a61b414dd4799b 162 SUPERFAMILY SSF51182 7 126 9.75E-18 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_PA00143 af6ffe376c9aca777df775a685720f4d 150 Pfam PF00034 Cytochrome c 50 135 1.8E-11 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PA00143 af6ffe376c9aca777df775a685720f4d 150 Gene3D G3DSA:1.10.760.10 1 150 1.3E-42 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_PA00143 af6ffe376c9aca777df775a685720f4d 150 SUPERFAMILY SSF46626 33 148 1.76E-21 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_CH02617 0a0d1b00d5f5823a21e8fb2d392f1af6 250 Pfam PF02586 SOS response associated peptidase (SRAP) 2 226 3.0E-15 T 12-10-2018 IPR003738 SOS response associated peptidase (SRAP) AMJ96_CH02617 0a0d1b00d5f5823a21e8fb2d392f1af6 250 SUPERFAMILY SSF143081 2 235 6.8E-63 T 12-10-2018 IPR036590 SOS response associated peptidase-like AMJ96_CH02617 0a0d1b00d5f5823a21e8fb2d392f1af6 250 Gene3D G3DSA:3.90.1680.20 140 223 2.0E-22 T 12-10-2018 AMJ96_PD00508 778d60e246065602f5a91de7334d241a 98 SUPERFAMILY SSF141868 2 35 1.7E-5 T 12-10-2018 IPR035919 EAL domain superfamily AMJ96_PD00389 2e20aa36465189d76b548d7e4f1a5c23 331 SUPERFAMILY SSF160964 32 67 3.01E-6 T 12-10-2018 AMJ96_PD00389 2e20aa36465189d76b548d7e4f1a5c23 331 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 124 330 1.1E-16 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00389 2e20aa36465189d76b548d7e4f1a5c23 331 Gene3D G3DSA:1.10.3720.10 77 331 5.8E-65 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00389 2e20aa36465189d76b548d7e4f1a5c23 331 SUPERFAMILY SSF161098 100 321 1.96E-56 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01270 72594b4c1f8c08e4304ec6fdd680e699 261 Pfam PF01522 Polysaccharide deacetylase 54 185 2.5E-15 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AMJ96_CH01270 72594b4c1f8c08e4304ec6fdd680e699 261 SUPERFAMILY SSF88713 56 251 5.28E-22 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMJ96_CH01270 72594b4c1f8c08e4304ec6fdd680e699 261 Gene3D G3DSA:3.20.20.370 51 258 8.4E-22 T 12-10-2018 AMJ96_CH02077 c493b4e08b6e540177c15c595603ebaf 468 SMART SM00044 251 450 3.5E-13 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH02077 c493b4e08b6e540177c15c595603ebaf 468 SUPERFAMILY SSF55073 296 467 4.24E-43 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02077 c493b4e08b6e540177c15c595603ebaf 468 Gene3D G3DSA:3.30.70.1230 264 468 1.6E-50 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH02077 c493b4e08b6e540177c15c595603ebaf 468 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 296 436 1.3E-24 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_PC00223 1867214dc9e7888fc95afa744b37a27a 292 SMART SM00849 15 204 7.1E-19 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_PC00223 1867214dc9e7888fc95afa744b37a27a 292 Pfam PF00753 Metallo-beta-lactamase superfamily 26 204 9.0E-22 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_PC00223 1867214dc9e7888fc95afa744b37a27a 292 Gene3D G3DSA:3.60.15.10 2 286 3.0E-96 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_PC00223 1867214dc9e7888fc95afa744b37a27a 292 SUPERFAMILY SSF56281 17 251 5.28E-41 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_PB00210 fee51826b0fb601837bc65805267a956 89 SUPERFAMILY SSF143120 7 54 5.89E-10 T 12-10-2018 IPR036165 YefM-like superfamily AMJ96_PB00210 fee51826b0fb601837bc65805267a956 89 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 7 54 2.1E-9 T 12-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM AMJ96_PB00210 fee51826b0fb601837bc65805267a956 89 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 8 50 1.8E-7 T 12-10-2018 AMJ96_CH02573 0a8042425370697a5a3338dfc1036527 77 Pfam PF09939 Uncharacterized protein conserved in bacteria (DUF2171) 7 69 9.1E-29 T 12-10-2018 IPR018684 Protein of unknown function DUF2171 AMJ96_CH00928 386bf7e88d52e863ca3a67bfad46e76b 334 Pfam PF12706 Beta-lactamase superfamily domain 90 289 2.1E-35 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_CH00928 386bf7e88d52e863ca3a67bfad46e76b 334 Gene3D G3DSA:3.60.15.10 61 333 5.5E-73 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH00928 386bf7e88d52e863ca3a67bfad46e76b 334 PIRSF PIRSF038896 47 332 4.9E-86 T 12-10-2018 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 AMJ96_CH00928 386bf7e88d52e863ca3a67bfad46e76b 334 SUPERFAMILY SSF56281 73 296 1.7E-29 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_PC00169 d58c8410e3ebff5cddd3078fffbd58db 632 SUPERFAMILY SSF49879 7 103 6.08E-6 T 12-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 AMJ96_PC00169 d58c8410e3ebff5cddd3078fffbd58db 632 Gene3D G3DSA:3.40.50.300 382 604 1.8E-70 T 12-10-2018 AMJ96_PC00169 d58c8410e3ebff5cddd3078fffbd58db 632 Gene3D G3DSA:3.30.450.380 203 379 1.9E-24 T 12-10-2018 AMJ96_PC00169 d58c8410e3ebff5cddd3078fffbd58db 632 SUPERFAMILY SSF52540 275 573 2.18E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PC00169 d58c8410e3ebff5cddd3078fffbd58db 632 Pfam PF00437 Type II/IV secretion system protein 286 561 1.1E-77 T 12-10-2018 IPR001482 Type II/IV secretion system protein AMJ96_CH00222 ef73d35acdf9c82c7d7822e6a5146bdf 463 SUPERFAMILY SSF75304 3 458 1.31E-118 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMJ96_CH00222 ef73d35acdf9c82c7d7822e6a5146bdf 463 Gene3D G3DSA:3.90.1300.10 2 457 1.3E-116 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMJ96_CH00222 ef73d35acdf9c82c7d7822e6a5146bdf 463 Pfam PF01425 Amidase 32 441 2.1E-85 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 AMJ96_CH01360 38acd4f2734ad1e598750639455c0e9f 338 SUPERFAMILY SSF53448 19 278 4.18E-42 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH01360 38acd4f2734ad1e598750639455c0e9f 338 Gene3D G3DSA:3.90.550.10 9 249 1.7E-37 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH01360 38acd4f2734ad1e598750639455c0e9f 338 Pfam PF00535 Glycosyl transferase family 2 21 185 1.3E-28 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AMJ96_CH01045 80af0714f91ba8026272b7a7e6261024 228 Pfam PF04012 PspA/IM30 family 2 223 1.3E-23 T 12-10-2018 IPR007157 PspA/IM30 AMJ96_CH04031 dbb44f8e903728c9e6bbf29f8919bf76 67 Pfam PF04588 Hypoxia induced protein conserved region 7 56 6.0E-12 T 12-10-2018 IPR007667 Hypoxia induced protein, domain AMJ96_CH02982 a43a575e6f7f004dd07ea1d8cda375f9 516 Pfam PF04293 SpoVR like protein 17 455 1.6E-166 T 12-10-2018 IPR007390 Sporulation stage V, protein R AMJ96_CH00248 2a9b5f4f3062922bdc957603804a7605 484 Gene3D G3DSA:3.40.50.12780 11 387 7.7E-63 T 12-10-2018 AMJ96_CH00248 2a9b5f4f3062922bdc957603804a7605 484 SUPERFAMILY SSF56801 32 478 1.96E-75 T 12-10-2018 AMJ96_CH00248 2a9b5f4f3062922bdc957603804a7605 484 Pfam PF00501 AMP-binding enzyme 53 393 4.1E-51 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 AMJ96_CH00856 755fd1031d7dade4f96765a271f62c2f 145 Pfam PF14437 MafB19-like deaminase 1 140 4.0E-26 T 12-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 AMJ96_CH00856 755fd1031d7dade4f96765a271f62c2f 145 Gene3D G3DSA:3.40.140.10 1 137 3.0E-51 T 12-10-2018 AMJ96_CH00856 755fd1031d7dade4f96765a271f62c2f 145 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 1 142 44.176 T 12-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 AMJ96_CH00856 755fd1031d7dade4f96765a271f62c2f 145 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 46 83 - T 12-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AMJ96_CH00856 755fd1031d7dade4f96765a271f62c2f 145 SUPERFAMILY SSF53927 1 142 1.68E-43 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 AMJ96_CH04091 5119b3810a93639732125c792f265acc 412 SUPERFAMILY SSF53850 27 404 4.98E-70 T 12-10-2018 AMJ96_CH04091 5119b3810a93639732125c792f265acc 412 Pfam PF13416 Bacterial extracellular solute-binding protein 40 341 2.4E-35 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH04091 5119b3810a93639732125c792f265acc 412 Gene3D G3DSA:3.40.190.10 21 411 9.1E-73 T 12-10-2018 AMJ96_CH00890 a07eb2994c243860afd5dcca09a03acf 385 Gene3D G3DSA:3.20.20.70 96 314 1.7E-9 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AMJ96_CH00890 a07eb2994c243860afd5dcca09a03acf 385 Pfam PF04055 Radical SAM superfamily 98 276 7.8E-17 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AMJ96_CH00890 a07eb2994c243860afd5dcca09a03acf 385 SMART SM00729 94 319 1.5E-8 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 AMJ96_CH00890 a07eb2994c243860afd5dcca09a03acf 385 SUPERFAMILY SSF102114 96 324 1.57E-13 T 12-10-2018 AMJ96_CH03100 c4fb87823d17753f8854afcfd311a33c 246 Gene3D G3DSA:3.30.70.2970 49 161 2.6E-70 T 12-10-2018 AMJ96_CH03100 c4fb87823d17753f8854afcfd311a33c 246 Pfam PF04402 Protein of unknown function (DUF541) 37 242 5.2E-51 T 12-10-2018 IPR007497 Protein of unknown function DUF541 AMJ96_CH03100 c4fb87823d17753f8854afcfd311a33c 246 Gene3D G3DSA:3.30.110.170 39 242 2.6E-70 T 12-10-2018 AMJ96_CH01912 d0cccf43b5b5125975712004deac3088 234 SUPERFAMILY SSF56281 1 222 5.9E-29 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH01912 d0cccf43b5b5125975712004deac3088 234 Gene3D G3DSA:3.60.15.10 1 234 7.0E-56 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH01912 d0cccf43b5b5125975712004deac3088 234 Hamap MF_00457 UPF0173 metal-dependent hydrolase . 1 234 34.478 T 12-10-2018 IPR022877 Protein of unknown funcion UPF0173 AMJ96_CH01912 d0cccf43b5b5125975712004deac3088 234 Pfam PF13483 Beta-lactamase superfamily domain 2 187 1.0E-17 T 12-10-2018 AMJ96_CH01912 d0cccf43b5b5125975712004deac3088 234 SMART SM00849 7 198 4.9E-9 T 12-10-2018 IPR001279 Metallo-beta-lactamase AMJ96_PB00315 320ae0570a7d7e613243b0e929d3de06 72 Gene3D G3DSA:3.40.50.300 1 65 1.1E-19 T 12-10-2018 AMJ96_PB00315 320ae0570a7d7e613243b0e929d3de06 72 SUPERFAMILY SSF52540 3 53 3.44E-13 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_PB00315 320ae0570a7d7e613243b0e929d3de06 72 Pfam PF01583 Adenylylsulphate kinase 5 54 2.3E-19 T 12-10-2018 AMJ96_PD00345 6f1bc008e9cdf319acf582076e854e5d 378 SUPERFAMILY SSF51905 9 373 1.6E-46 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_PD00345 6f1bc008e9cdf319acf582076e854e5d 378 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 2.0E-5 T 12-10-2018 AMJ96_PD00345 6f1bc008e9cdf319acf582076e854e5d 378 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 187 202 2.0E-5 T 12-10-2018 AMJ96_PD00345 6f1bc008e9cdf319acf582076e854e5d 378 Pfam PF01266 FAD dependent oxidoreductase 9 354 1.3E-41 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_PD00345 6f1bc008e9cdf319acf582076e854e5d 378 Gene3D G3DSA:3.30.9.10 89 317 9.1E-53 T 12-10-2018 AMJ96_PD00345 6f1bc008e9cdf319acf582076e854e5d 378 Gene3D G3DSA:3.50.50.60 10 359 9.1E-53 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH02572 668f578b263e9b274f13d36259f4c757 61 Pfam PF11450 Protein of unknwon function (DUF3008) 3 59 6.7E-31 T 12-10-2018 IPR021553 Protein of unknwon function DUF3008 AMJ96_CH02317 7207257d9ca07ce1e04134c3cb51f47d 178 Pfam PF13302 Acetyltransferase (GNAT) domain 12 149 8.0E-27 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH02317 7207257d9ca07ce1e04134c3cb51f47d 178 SUPERFAMILY SSF55729 6 150 2.01E-31 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH02317 7207257d9ca07ce1e04134c3cb51f47d 178 Gene3D G3DSA:3.40.630.30 1 154 1.8E-35 T 12-10-2018 AMJ96_CH00207 a04195b45e61ff8dea5b363b32d4ae25 136 Pfam PF13629 Pilus formation protein N terminal region 29 97 3.8E-21 T 12-10-2018 IPR032789 Pilus formation protein, N-terminal AMJ96_CH04080 673bfda75cfa7fec30c7db138c53940e 87 Pfam PF06169 Protein of unknown function (DUF982) 11 81 3.3E-13 T 12-10-2018 IPR010385 Protein of unknown function DUF982 AMJ96_CH00443 80598859334d89ee543da2488e54ef98 256 SUPERFAMILY SSF51621 3 252 2.78E-60 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 AMJ96_CH00443 80598859334d89ee543da2488e54ef98 256 Gene3D G3DSA:3.20.20.60 1 251 5.7E-72 T 12-10-2018 AMJ96_CH00443 80598859334d89ee543da2488e54ef98 256 Pfam PF13714 Phosphoenolpyruvate phosphomutase 10 252 8.1E-77 T 12-10-2018 AMJ96_PC00059 062e1035b0fb62296cf49b1d74b5fd14 292 Pfam PF05050 Methyltransferase FkbM domain 101 227 1.8E-9 T 12-10-2018 IPR006342 Methyltransferase FkbM AMJ96_PC00059 062e1035b0fb62296cf49b1d74b5fd14 292 SUPERFAMILY SSF53335 15 254 4.5E-41 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_PC00059 062e1035b0fb62296cf49b1d74b5fd14 292 Gene3D G3DSA:3.40.50.150 89 260 1.2E-27 T 12-10-2018 AMJ96_PC00059 062e1035b0fb62296cf49b1d74b5fd14 292 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 98 230 4.5E-23 T 12-10-2018 IPR006342 Methyltransferase FkbM AMJ96_CH02811 c3167a98f21a9a5bf02ccf167079f5f4 112 Gene3D G3DSA:3.30.750.24 29 109 2.9E-7 T 12-10-2018 IPR036513 STAS domain superfamily AMJ96_CH02811 c3167a98f21a9a5bf02ccf167079f5f4 112 SUPERFAMILY SSF52091 32 106 3.34E-9 T 12-10-2018 IPR036513 STAS domain superfamily AMJ96_CH04108 7c42e962c9d4001ccfa88e6f574ae09e 113 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 29 44 5.8E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH04108 7c42e962c9d4001ccfa88e6f574ae09e 113 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 61 76 5.8E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH04108 7c42e962c9d4001ccfa88e6f574ae09e 113 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 76 91 5.8E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH04108 7c42e962c9d4001ccfa88e6f574ae09e 113 SUPERFAMILY SSF46785 23 107 4.4E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH04108 7c42e962c9d4001ccfa88e6f574ae09e 113 Pfam PF01022 Bacterial regulatory protein, arsR family 35 80 6.8E-14 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_CH04108 7c42e962c9d4001ccfa88e6f574ae09e 113 Gene3D G3DSA:1.10.10.10 12 111 6.0E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH04108 7c42e962c9d4001ccfa88e6f574ae09e 113 SMART SM00418 27 105 1.2E-26 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AMJ96_PD00108 e3c97f9b005f86675cf4d104bbe7a43a 271 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 258 1.9E-20 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00108 e3c97f9b005f86675cf4d104bbe7a43a 271 SUPERFAMILY SSF161098 3 271 4.3E-67 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00108 e3c97f9b005f86675cf4d104bbe7a43a 271 Gene3D G3DSA:1.10.3720.10 1 259 1.2E-58 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01843 288715879c48f35452e207677fa177f4 134 Pfam PF04120 Low affinity iron permease 8 130 3.1E-49 T 12-10-2018 IPR007251 Low affinity iron permease, Fet4 GO:0055085 AMJ96_CH03598 85309e3053a3b1cea603cf96f5e568a1 493 Pfam PF13440 Polysaccharide biosynthesis protein 32 321 4.4E-52 T 12-10-2018 AMJ96_CH02019 add3e9c47d189d547ea80bd1443e1efa 224 SUPERFAMILY SSF51182 3 119 2.41E-35 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH02019 add3e9c47d189d547ea80bd1443e1efa 224 Gene3D G3DSA:2.60.120.10 1 222 3.3E-76 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH02019 add3e9c47d189d547ea80bd1443e1efa 224 Pfam PF12973 ChrR Cupin-like domain 19 109 4.6E-40 T 12-10-2018 IPR025979 ChrR-like cupin domain AMJ96_CH02019 add3e9c47d189d547ea80bd1443e1efa 224 SUPERFAMILY SSF51182 134 211 2.55E-9 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_CH02763 11ce32952537def997ef6e09c8a3968f 633 Pfam PF02705 K+ potassium transporter 23 555 1.8E-196 T 12-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 AMJ96_CH02763 11ce32952537def997ef6e09c8a3968f 633 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 14 633 32.638 T 12-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup AMJ96_PA00018 2c8d5a9e48d3a99759b65020f8d84655 244 Gene3D G3DSA:3.10.490.10 36 221 5.2E-8 T 12-10-2018 AMJ96_PA00018 2c8d5a9e48d3a99759b65020f8d84655 244 Pfam PF04752 ChaC-like protein 48 217 4.1E-47 T 12-10-2018 IPR006840 Glutathione-specific gamma-glutamylcyclotransferase GO:0003839|GO:0006751 KEGG: 00480+4.3.2.7|MetaCyc: PWY-7942|Reactome: R-HSA-174403 AMJ96_PA00018 2c8d5a9e48d3a99759b65020f8d84655 244 SUPERFAMILY SSF110857 48 121 1.2E-5 T 12-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily AMJ96_CH02033 a651764de0d2a2b1bdd3c5c628232c24 290 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 276 1.4E-35 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03113 0df152843e3911f19ba0e2ec1a0d9de2 97 Pfam PF08734 GYD domain 4 92 6.4E-29 T 12-10-2018 IPR014845 Protein GYD/TTHA1554 AMJ96_PD00239 c943c2d53a1ca22803e8958a58738dbf 448 SUPERFAMILY SSF53850 21 445 1.15E-49 T 12-10-2018 AMJ96_PD00239 c943c2d53a1ca22803e8958a58738dbf 448 Gene3D G3DSA:3.40.190.10 26 444 1.9E-49 T 12-10-2018 AMJ96_PD00239 c943c2d53a1ca22803e8958a58738dbf 448 Pfam PF13416 Bacterial extracellular solute-binding protein 66 359 1.6E-18 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_CH00676 e8abda999b45be9417c88a6916a0b80f 98 SUPERFAMILY SSF52091 8 87 1.96E-7 T 12-10-2018 IPR036513 STAS domain superfamily AMJ96_CH00676 e8abda999b45be9417c88a6916a0b80f 98 Pfam PF13466 STAS domain 10 86 1.5E-15 T 12-10-2018 IPR002645 STAS domain AMJ96_CH00676 e8abda999b45be9417c88a6916a0b80f 98 Gene3D G3DSA:3.30.750.24 3 95 5.7E-7 T 12-10-2018 IPR036513 STAS domain superfamily AMJ96_PC00056 a1e8d3e26c3a04dfd52a17da38159cb0 439 Pfam PF01882 Protein of unknown function DUF58 194 279 8.8E-20 T 12-10-2018 IPR002881 Domain of unknown function DUF58 AMJ96_PC00056 a1e8d3e26c3a04dfd52a17da38159cb0 439 SUPERFAMILY SSF53300 235 368 6.95E-7 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily AMJ96_CH00297 4665e9d2091dd85bc9fc4eccc666976d 116 Gene3D G3DSA:3.40.30.10 2 114 2.5E-44 T 12-10-2018 AMJ96_CH00297 4665e9d2091dd85bc9fc4eccc666976d 116 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 4 111 2.8E-32 T 12-10-2018 IPR006504 Transcriptional regulator Spx/MgsR AMJ96_CH00297 4665e9d2091dd85bc9fc4eccc666976d 116 Pfam PF03960 ArsC family 6 112 4.4E-19 T 12-10-2018 IPR006660 Arsenate reductase-like AMJ96_CH00297 4665e9d2091dd85bc9fc4eccc666976d 116 SUPERFAMILY SSF52833 3 114 2.6E-36 T 12-10-2018 IPR036249 Thioredoxin-like superfamily AMJ96_PC00397 e9687b881d666ee5db68cc692e5bd50f 160 Gene3D G3DSA:3.10.450.50 10 150 1.5E-5 T 12-10-2018 AMJ96_PC00397 e9687b881d666ee5db68cc692e5bd50f 160 SUPERFAMILY SSF54427 15 149 2.72E-12 T 12-10-2018 IPR032710 NTF2-like domain superfamily AMJ96_PC00156 6f3cdbe0197c88843c5967a2d57279c7 92 SUPERFAMILY SSF47598 11 79 2.61E-17 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMJ96_PC00156 6f3cdbe0197c88843c5967a2d57279c7 92 Pfam PF08681 Protein of unknown function (DUF1778) 15 85 1.3E-16 T 12-10-2018 IPR014795 Vibrio phage ICP1, Orf50 AMJ96_PC00156 6f3cdbe0197c88843c5967a2d57279c7 92 Gene3D G3DSA:1.20.5.780 7 91 1.5E-8 T 12-10-2018 AMJ96_CH03908 49a10d15f45106a97922f27cbd58d87d 249 Pfam PF03741 Integral membrane protein TerC family 18 209 7.6E-54 T 12-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 AMJ96_CH01107 a2f4d33a190773a21473955a619b9578 138 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 12 135 6.4E-23 T 12-10-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III AMJ96_PB00206 94c7911bf8eb674f678767886679406b 107 Pfam PF05284 Protein of unknown function (DUF736) 4 105 2.3E-23 T 12-10-2018 IPR007948 Protein of unknown function DUF736 AMJ96_PD00439 c4d8d48166d5ae003391652a99a2f5a7 300 SUPERFAMILY SSF55729 16 213 2.13E-26 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_PD00439 c4d8d48166d5ae003391652a99a2f5a7 300 Pfam PF00583 Acetyltransferase (GNAT) family 40 127 5.4E-7 T 12-10-2018 IPR000182 GNAT domain AMJ96_PD00439 c4d8d48166d5ae003391652a99a2f5a7 300 Gene3D G3DSA:3.40.630.30 17 130 3.2E-10 T 12-10-2018 AMJ96_PD00439 c4d8d48166d5ae003391652a99a2f5a7 300 Gene3D G3DSA:3.40.630.30 131 235 1.9E-5 T 12-10-2018 AMJ96_CH00261 778f8c3ff7fb40d74ffc0487ad51ffe8 172 SUPERFAMILY SSF55729 4 171 3.55E-29 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH00261 778f8c3ff7fb40d74ffc0487ad51ffe8 172 Pfam PF00583 Acetyltransferase (GNAT) family 57 143 1.2E-11 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH00261 778f8c3ff7fb40d74ffc0487ad51ffe8 172 Gene3D G3DSA:3.40.630.30 2 172 2.7E-51 T 12-10-2018 AMJ96_CH04188 d0f9da3e0f28ed38da257e60c5801b10 185 Pfam PF13420 Acetyltransferase (GNAT) domain 5 160 8.5E-23 T 12-10-2018 AMJ96_CH04188 d0f9da3e0f28ed38da257e60c5801b10 185 Gene3D G3DSA:3.40.630.30 2 185 1.3E-56 T 12-10-2018 AMJ96_CH04188 d0f9da3e0f28ed38da257e60c5801b10 185 SUPERFAMILY SSF55729 3 166 2.23E-33 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH03546 f020c286f5f915a8af849f93257537d5 159 Pfam PF04403 Paraquat-inducible protein A 14 147 2.2E-23 T 12-10-2018 IPR007498 Intermembrane transport protein PqiA-like AMJ96_PB00440 1b98c94a10b0b0a77aa2a754ddd50fd5 402 Pfam PF11800 Replication protein C C-terminal region 193 394 1.1E-78 T 12-10-2018 IPR021760 Replication protein-C C-terminal AMJ96_PB00440 1b98c94a10b0b0a77aa2a754ddd50fd5 402 Pfam PF03428 Replication protein C N-terminal domain 13 186 1.1E-64 T 12-10-2018 IPR005090 Replication protein C AMJ96_PB00213 f8793855ca7e1579c7846e87c0860748 95 Pfam PF07820 TraC-like protein 4 91 1.4E-35 T 12-10-2018 IPR012930 TraC-like GO:0000746 AMJ96_PC00002 5cc601773d4ce551da7616f606e978fc 236 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 23 231 3.2E-66 T 12-10-2018 IPR006214 Bax inhibitor 1-related AMJ96_PA00012 7377a5f5bf446d6d9adba8a889808e6b 186 SUPERFAMILY SSF52218 5 169 6.79E-32 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_PA00012 7377a5f5bf446d6d9adba8a889808e6b 186 Gene3D G3DSA:3.40.50.360 3 178 2.1E-44 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_PA00012 7377a5f5bf446d6d9adba8a889808e6b 186 TIGRFAM TIGR03566 FMN_reduc_MsuE: FMN reductase 5 176 1.8E-78 T 12-10-2018 IPR019912 FMN reductase, MsuE-like AMJ96_PA00012 7377a5f5bf446d6d9adba8a889808e6b 186 Pfam PF03358 NADPH-dependent FMN reductase 5 148 4.3E-32 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMJ96_PB00237 58b2662a30b4ff1edc0b9b2d72e3f10f 323 SMART SM00364 196 215 37.0 T 12-10-2018 AMJ96_PB00237 58b2662a30b4ff1edc0b9b2d72e3f10f 323 SMART SM00364 112 131 0.078 T 12-10-2018 AMJ96_PB00237 58b2662a30b4ff1edc0b9b2d72e3f10f 323 SMART SM00364 91 110 0.12 T 12-10-2018 AMJ96_PB00237 58b2662a30b4ff1edc0b9b2d72e3f10f 323 SMART SM00364 259 278 30.0 T 12-10-2018 AMJ96_PB00237 58b2662a30b4ff1edc0b9b2d72e3f10f 323 SMART SM00364 238 257 6.8 T 12-10-2018 AMJ96_PB00237 58b2662a30b4ff1edc0b9b2d72e3f10f 323 SMART SM00364 175 194 0.15 T 12-10-2018 AMJ96_PB00237 58b2662a30b4ff1edc0b9b2d72e3f10f 323 SMART SM00364 217 236 0.44 T 12-10-2018 AMJ96_PB00237 58b2662a30b4ff1edc0b9b2d72e3f10f 323 SMART SM00364 154 173 1.5E-4 T 12-10-2018 AMJ96_PB00237 58b2662a30b4ff1edc0b9b2d72e3f10f 323 SMART SM00364 133 153 0.46 T 12-10-2018 AMJ96_PB00237 58b2662a30b4ff1edc0b9b2d72e3f10f 323 Gene3D G3DSA:3.80.10.10 32 318 5.9E-56 T 12-10-2018 IPR032675 Leucine-rich repeat domain superfamily AMJ96_PB00237 58b2662a30b4ff1edc0b9b2d72e3f10f 323 SUPERFAMILY SSF52058 76 306 6.8E-31 T 12-10-2018 AMJ96_PB00237 58b2662a30b4ff1edc0b9b2d72e3f10f 323 Pfam PF00560 Leucine Rich Repeat 156 173 1.5 T 12-10-2018 IPR001611 Leucine-rich repeat GO:0005515 AMJ96_PB00237 58b2662a30b4ff1edc0b9b2d72e3f10f 323 SMART SM00369 176 198 43.0 T 12-10-2018 IPR003591 Leucine-rich repeat, typical subtype AMJ96_PB00237 58b2662a30b4ff1edc0b9b2d72e3f10f 323 SMART SM00369 132 156 21.0 T 12-10-2018 IPR003591 Leucine-rich repeat, typical subtype AMJ96_PB00237 58b2662a30b4ff1edc0b9b2d72e3f10f 323 SMART SM00369 157 175 220.0 T 12-10-2018 IPR003591 Leucine-rich repeat, typical subtype AMJ96_PB00237 58b2662a30b4ff1edc0b9b2d72e3f10f 323 SMART SM00369 237 261 23.0 T 12-10-2018 IPR003591 Leucine-rich repeat, typical subtype AMJ96_PB00237 58b2662a30b4ff1edc0b9b2d72e3f10f 323 SMART SM00369 90 114 390.0 T 12-10-2018 IPR003591 Leucine-rich repeat, typical subtype AMJ96_CH00128 6789f21e42f371fe553f95a10e0395f8 205 Pfam PF03473 MOSC domain 47 158 1.2E-15 T 12-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 AMJ96_CH00128 6789f21e42f371fe553f95a10e0395f8 205 Gene3D G3DSA:2.40.33.20 1 205 4.6E-49 T 12-10-2018 AMJ96_CH00128 6789f21e42f371fe553f95a10e0395f8 205 SUPERFAMILY SSF50800 1 187 1.2E-46 T 12-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily AMJ96_CH02574 752d65d842ad19c904e9593916218654 345 Pfam PF11168 Protein of unknown function (DUF2955) 12 148 1.3E-10 T 12-10-2018 IPR022604 Protein of unknown function DUF2955 AMJ96_PD00655 d9a5bc2318ae84c5120cc7ab09d7082b 77 Pfam PF06412 Conjugal transfer protein TraD 3 61 2.5E-20 T 12-10-2018 IPR009444 Conjugal transfer, TraD, alpha-type GO:0000746 AMJ96_PC00212 881b015c5f4f98eea962c56766d0fd7a 160 Gene3D G3DSA:3.40.630.30 4 160 1.0E-44 T 12-10-2018 AMJ96_PC00212 881b015c5f4f98eea962c56766d0fd7a 160 SUPERFAMILY SSF55729 1 160 3.09E-29 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_PC00212 881b015c5f4f98eea962c56766d0fd7a 160 Pfam PF00583 Acetyltransferase (GNAT) family 31 133 2.7E-10 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH01099 fca5619d1f3e29a60b37af411c2a59f4 161 Gene3D G3DSA:3.30.530.20 4 160 1.6E-48 T 12-10-2018 IPR023393 START-like domain superfamily AMJ96_CH01099 fca5619d1f3e29a60b37af411c2a59f4 161 SUPERFAMILY SSF55961 9 150 9.02E-45 T 12-10-2018 AMJ96_CH01099 fca5619d1f3e29a60b37af411c2a59f4 161 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 21 148 5.2E-30 T 12-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like AMJ96_PC00199 4a1698f31bde201c1f6982842fa82488 285 SUPERFAMILY SSF161098 71 262 1.42E-17 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00199 4a1698f31bde201c1f6982842fa82488 285 Gene3D G3DSA:1.10.3720.10 63 275 1.4E-14 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00199 4a1698f31bde201c1f6982842fa82488 285 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 279 1.5E-16 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH04026 52bf1660ef88bffd9d7d0dca735edc2f 185 Gene3D G3DSA:3.30.40.60 74 161 1.8E-20 T 12-10-2018 AMJ96_CH04026 52bf1660ef88bffd9d7d0dca735edc2f 185 SMART SM00507 81 131 3.1E-12 T 12-10-2018 IPR003615 HNH nuclease AMJ96_CH04026 52bf1660ef88bffd9d7d0dca735edc2f 185 Pfam PF14279 HNH endonuclease 94 143 1.8E-15 T 12-10-2018 IPR029471 HNH endonuclease 5 AMJ96_CH00055 ab13a38148fb83c6b56c01b4e3f74b22 164 Pfam PF06319 DNA repair protein MmcB-like 9 154 1.0E-75 T 12-10-2018 IPR009394 DNA repair protein MmcB-like AMJ96_CH00055 ab13a38148fb83c6b56c01b4e3f74b22 164 Gene3D G3DSA:3.40.1350.10 12 158 3.4E-51 T 12-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 AMJ96_CH00055 ab13a38148fb83c6b56c01b4e3f74b22 164 PIRSF PIRSF031796 1 162 8.0E-93 T 12-10-2018 IPR009394 DNA repair protein MmcB-like AMJ96_CH02431 5651ca677103c1ca8d0282369d0e1ef6 176 Pfam PF06210 Protein of unknown function (DUF1003) 62 152 1.1E-35 T 12-10-2018 IPR010406 Protein of unknown function DUF1003 AMJ96_CH02259 213e060bdb4dcb6859a45c0d86fa08ee 148 Gene3D G3DSA:3.90.1010.10 1 135 4.3E-24 T 12-10-2018 AMJ96_CH02259 213e060bdb4dcb6859a45c0d86fa08ee 148 Pfam PF01592 NifU-like N terminal domain 5 79 1.7E-9 T 12-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 AMJ96_CH02259 213e060bdb4dcb6859a45c0d86fa08ee 148 SUPERFAMILY SSF82649 1 141 4.45E-40 T 12-10-2018 AMJ96_PD00395 2cc90f22425346a5d233d6896e06537c 420 Pfam PF11902 Protein of unknown function (DUF3422) 6 407 4.0E-125 T 12-10-2018 IPR021830 Protein of unknown function DUF3422 AMJ96_CH00116 9c510e76bd4673f06e7225c8935ec6a0 282 SUPERFAMILY SSF53474 34 277 9.78E-55 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH00116 9c510e76bd4673f06e7225c8935ec6a0 282 Pfam PF00561 alpha/beta hydrolase fold 61 160 2.7E-17 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_CH00116 9c510e76bd4673f06e7225c8935ec6a0 282 Gene3D G3DSA:3.40.50.1820 39 278 6.6E-52 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PD00191 4a9a10913036b41e6a87f03495f07716 249 SUPERFAMILY SSF46626 61 204 5.15E-21 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_PD00191 4a9a10913036b41e6a87f03495f07716 249 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 128 200 1.4E-11 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_PD00191 4a9a10913036b41e6a87f03495f07716 249 Gene3D G3DSA:1.10.760.10 114 236 2.9E-21 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_PB00168 eb1c9bff8e117121167525f80c2ef4eb 172 Gene3D G3DSA:3.40.50.360 1 170 1.1E-32 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_PB00168 eb1c9bff8e117121167525f80c2ef4eb 172 SUPERFAMILY SSF52218 1 149 2.33E-26 T 12-10-2018 IPR029039 Flavoprotein-like superfamily AMJ96_PB00168 eb1c9bff8e117121167525f80c2ef4eb 172 Pfam PF03358 NADPH-dependent FMN reductase 1 145 1.2E-24 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AMJ96_PD00379 19fb73640a69138bc0b007b71dc9ff35 483 Gene3D G3DSA:1.10.4160.10 2 465 6.3E-106 T 12-10-2018 IPR038271 Purine-cytosine permease superfamily AMJ96_PD00379 19fb73640a69138bc0b007b71dc9ff35 483 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 17 444 8.6E-77 T 12-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH00172 a517b3fc5a828d00b74b26bddde3216a 368 PIRSF PIRSF007313 1 362 5.8E-158 T 12-10-2018 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 AMJ96_CH00172 a517b3fc5a828d00b74b26bddde3216a 368 Pfam PF05861 Bacterial phosphonate metabolism protein (PhnI) 1 352 9.0E-162 T 12-10-2018 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 AMJ96_CH03300 b7f83177b120c0ed583350c754da62e2 392 SUPERFAMILY SSF51905 9 364 3.75E-23 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03300 b7f83177b120c0ed583350c754da62e2 392 Pfam PF01266 FAD dependent oxidoreductase 17 362 1.4E-39 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AMJ96_CH03300 b7f83177b120c0ed583350c754da62e2 392 Gene3D G3DSA:3.50.50.60 17 363 3.5E-50 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily AMJ96_CH03300 b7f83177b120c0ed583350c754da62e2 392 Gene3D G3DSA:3.30.9.10 102 327 3.5E-50 T 12-10-2018 AMJ96_PC00233 e65ddb3a064f994be245ee5e52c8d372 230 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 227 7.9E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00233 e65ddb3a064f994be245ee5e52c8d372 230 Gene3D G3DSA:1.10.3720.10 2 228 1.0E-38 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00233 e65ddb3a064f994be245ee5e52c8d372 230 SUPERFAMILY SSF161098 14 212 1.96E-32 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00233 e65ddb3a064f994be245ee5e52c8d372 230 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 121 1.7E-13 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 AMJ96_CH04373 cf829d6f82938e0013ea50c71c0dcb00 157 Gene3D G3DSA:3.30.160.150 20 157 3.0E-19 T 12-10-2018 AMJ96_CH04373 cf829d6f82938e0013ea50c71c0dcb00 157 Pfam PF04390 Lipopolysaccharide-assembly 36 145 5.1E-7 T 12-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 AMJ96_PC00200 cd20586ffb4e60eaa3a99d062c1f78e5 334 SUPERFAMILY SSF161098 103 314 2.07E-10 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00200 cd20586ffb4e60eaa3a99d062c1f78e5 334 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 126 332 4.3E-31 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00200 cd20586ffb4e60eaa3a99d062c1f78e5 334 Gene3D G3DSA:1.10.3720.10 98 329 7.2E-13 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00072 66e765da39085db8c1c6ac7e5e401913 170 Pfam PF09722 Protein of unknown function (DUF2384) 94 147 4.3E-10 T 12-10-2018 IPR024467 Domain of unknown function DUF2384 AMJ96_PC00072 66e765da39085db8c1c6ac7e5e401913 170 ProDom PD080812 PLASMID Y4OB BMEII097 AGR_L_107P MLL2216 BMEII0977 ATU4831 31 142 3.0E-38 T 12-10-2018 IPR020358 Uncharacterised protein family Y4oB AMJ96_PD00111 010f3949c22522141095f4423bfc5da1 110 Gene3D G3DSA:3.30.2310.20 2 103 7.8E-17 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily AMJ96_PD00111 010f3949c22522141095f4423bfc5da1 110 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 9 98 6.2E-13 T 12-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family AMJ96_CH00955 9b61764a1c084cf70d3573c000688e9e 86 Pfam PF07076 Protein of unknown function (DUF1344) 24 83 2.7E-29 T 12-10-2018 IPR009780 Protein of unknown function DUF1344 AMJ96_CH04289 5f41b2da2d7213786961831585506a6c 242 SUPERFAMILY SSF53697 2 207 7.34E-29 T 12-10-2018 AMJ96_CH04289 5f41b2da2d7213786961831585506a6c 242 Pfam PF13580 SIS domain 8 142 2.1E-40 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AMJ96_CH04289 5f41b2da2d7213786961831585506a6c 242 Gene3D G3DSA:3.40.50.10490 2 237 1.7E-74 T 12-10-2018 AMJ96_PB00143 f00037ce8fd4fa007a3cf3696204a793 86 Gene3D G3DSA:2.30.30.40 42 86 1.9E-5 T 12-10-2018 AMJ96_PB00143 f00037ce8fd4fa007a3cf3696204a793 86 SUPERFAMILY SSF50341 5 84 8.11E-6 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 AMJ96_CH04062 eb9ccd3783f2d26427cc36b8f881d73b 188 SUPERFAMILY SSF52540 2 174 2.37E-17 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH04062 eb9ccd3783f2d26427cc36b8f881d73b 188 Gene3D G3DSA:3.40.50.300 1 175 4.7E-13 T 12-10-2018 AMJ96_PB00268 271aba654065d8b8ada0e1295b54293a 95 Pfam PF01527 Transposase 2 71 7.1E-24 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMJ96_PB00268 271aba654065d8b8ada0e1295b54293a 95 SUPERFAMILY SSF46689 1 69 2.33E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 AMJ96_CH02444 11c26011126a524c82c12f27d5904699 275 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 57 124 5.8E-7 T 12-10-2018 IPR010221 VCBS repeat AMJ96_CH01854 0fe9c0659a4db84a5bb1f0700fe54772 112 Pfam PF13619 KTSC domain 13 61 5.2E-8 T 12-10-2018 IPR025309 KTSC domain AMJ96_CH02831 aeebc10fbe4e559ec3e55169801e3a21 161 SMART SM00387 42 152 6.6E-16 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH02831 aeebc10fbe4e559ec3e55169801e3a21 161 SUPERFAMILY SSF55874 66 150 4.71E-28 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02831 aeebc10fbe4e559ec3e55169801e3a21 161 PRINTS PR00344 Bacterial sensor protein C-terminal signature 112 130 6.9E-22 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02831 aeebc10fbe4e559ec3e55169801e3a21 161 PRINTS PR00344 Bacterial sensor protein C-terminal signature 79 93 6.9E-22 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02831 aeebc10fbe4e559ec3e55169801e3a21 161 PRINTS PR00344 Bacterial sensor protein C-terminal signature 97 107 6.9E-22 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02831 aeebc10fbe4e559ec3e55169801e3a21 161 PRINTS PR00344 Bacterial sensor protein C-terminal signature 136 149 6.9E-22 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AMJ96_CH02831 aeebc10fbe4e559ec3e55169801e3a21 161 Gene3D G3DSA:3.30.565.10 35 153 1.1E-28 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH02831 aeebc10fbe4e559ec3e55169801e3a21 161 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 76 150 9.0E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase AMJ96_CH04143 b88907f23c6c9d372056261cffe3ba38 171 Pfam PF02974 Protease inhibitor Inh 84 171 7.1E-21 T 12-10-2018 IPR021140 Alkaline proteinase inhibitor/ Outer membrane lipoprotein Omp19 AMJ96_CH04143 b88907f23c6c9d372056261cffe3ba38 171 PIRSF PIRSF034005 3 171 4.0E-62 T 12-10-2018 IPR010571 Outer membrane lipoprotein, Omp19, bacterial GO:0019867 AMJ96_CH04143 b88907f23c6c9d372056261cffe3ba38 171 SUPERFAMILY SSF50882 84 171 5.23E-12 T 12-10-2018 IPR016085 Protease inhibitor, beta-barrel domain GO:0004866 AMJ96_PA00164 1adc3073684fcc065f66d47941a87418 546 Gene3D G3DSA:3.40.190.10 85 528 1.2E-39 T 12-10-2018 AMJ96_PA00164 1adc3073684fcc065f66d47941a87418 546 Pfam PF13416 Bacterial extracellular solute-binding protein 114 431 6.9E-18 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PA00164 1adc3073684fcc065f66d47941a87418 546 SUPERFAMILY SSF53850 89 529 7.03E-39 T 12-10-2018 AMJ96_PA00212 7b14e326325320dbdce5e3c88950059f 65 Pfam PF11755 Protein of unknown function (DUF3311) 11 64 9.5E-22 T 12-10-2018 IPR021741 Protein of unknown function DUF3311 AMJ96_CH00637 47717570e06334554db422c6fe11e608 418 PRINTS PR00758 Arsenical pump membrane protein signature 104 128 9.8E-27 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AMJ96_CH00637 47717570e06334554db422c6fe11e608 418 PRINTS PR00758 Arsenical pump membrane protein signature 358 383 9.8E-27 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AMJ96_CH00637 47717570e06334554db422c6fe11e608 418 PRINTS PR00758 Arsenical pump membrane protein signature 391 415 9.8E-27 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AMJ96_CH00637 47717570e06334554db422c6fe11e608 418 PRINTS PR00758 Arsenical pump membrane protein signature 179 202 9.8E-27 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AMJ96_CH00637 47717570e06334554db422c6fe11e608 418 PRINTS PR00758 Arsenical pump membrane protein signature 276 300 9.8E-27 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AMJ96_CH00637 47717570e06334554db422c6fe11e608 418 Pfam PF02040 Arsenical pump membrane protein 18 416 5.5E-36 T 12-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AMJ96_CH04084 1341c2eace979fe7de093d14711bb598 96 Pfam PF04972 BON domain 23 85 6.9E-13 T 12-10-2018 IPR007055 BON domain AMJ96_PD00080 6eef5264685c469d56f491c6b867084f 297 Pfam PF12697 Alpha/beta hydrolase family 35 266 1.1E-13 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PD00080 6eef5264685c469d56f491c6b867084f 297 SUPERFAMILY SSF53474 14 281 2.03E-40 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PD00080 6eef5264685c469d56f491c6b867084f 297 PRINTS PR00412 Epoxide hydrolase signature 115 128 1.0E-5 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_PD00080 6eef5264685c469d56f491c6b867084f 297 PRINTS PR00412 Epoxide hydrolase signature 257 279 1.0E-5 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_PD00080 6eef5264685c469d56f491c6b867084f 297 PRINTS PR00412 Epoxide hydrolase signature 56 71 1.0E-5 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AMJ96_PD00080 6eef5264685c469d56f491c6b867084f 297 PRINTS PR00111 Alpha/beta hydrolase fold signature 115 128 2.9E-10 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PD00080 6eef5264685c469d56f491c6b867084f 297 PRINTS PR00111 Alpha/beta hydrolase fold signature 56 71 2.9E-10 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PD00080 6eef5264685c469d56f491c6b867084f 297 PRINTS PR00111 Alpha/beta hydrolase fold signature 101 114 2.9E-10 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PD00080 6eef5264685c469d56f491c6b867084f 297 PRINTS PR00111 Alpha/beta hydrolase fold signature 225 239 2.9E-10 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 AMJ96_PD00080 6eef5264685c469d56f491c6b867084f 297 Gene3D G3DSA:3.40.50.1820 10 293 6.1E-41 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_CH02964 eeab3320dc0ed63522602b2fa9490d3b 172 Pfam PF00186 Dihydrofolate reductase 7 169 1.8E-53 T 12-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 AMJ96_CH02964 eeab3320dc0ed63522602b2fa9490d3b 172 SUPERFAMILY SSF53597 8 170 3.93E-55 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMJ96_CH02964 eeab3320dc0ed63522602b2fa9490d3b 172 Gene3D G3DSA:3.40.430.10 6 172 9.1E-55 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 AMJ96_CH02964 eeab3320dc0ed63522602b2fa9490d3b 172 PRINTS PR00070 Dihydrofolate reductase signature 31 39 1.6E-14 T 12-10-2018 AMJ96_CH02964 eeab3320dc0ed63522602b2fa9490d3b 172 PRINTS PR00070 Dihydrofolate reductase signature 44 55 1.6E-14 T 12-10-2018 AMJ96_CH02964 eeab3320dc0ed63522602b2fa9490d3b 172 PRINTS PR00070 Dihydrofolate reductase signature 17 27 1.6E-14 T 12-10-2018 AMJ96_CH02964 eeab3320dc0ed63522602b2fa9490d3b 172 PRINTS PR00070 Dihydrofolate reductase signature 101 115 1.6E-14 T 12-10-2018 AMJ96_CH02964 eeab3320dc0ed63522602b2fa9490d3b 172 PIRSF PIRSF000194 2 172 4.4E-58 T 12-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 AMJ96_CH01191 242a74af7f3622709a1ab39f0faaba6e 71 Pfam PF11160 Protein of unknown function (DUF2945) 7 67 4.8E-23 T 12-10-2018 IPR021331 Protein of unknown function DUF2945 AMJ96_CH04198 2f0ec97a7f52a465b83e14342d4b30ab 195 Pfam PF10755 Protein of unknown function (DUF2585) 32 194 3.9E-86 T 12-10-2018 IPR019691 Protein of unknown function DUF2585 GO:0005886 AMJ96_CH04198 2f0ec97a7f52a465b83e14342d4b30ab 195 Hamap MF_01514 UPF0314 protein . 1 194 41.608 T 12-10-2018 IPR019691 Protein of unknown function DUF2585 GO:0005886 AMJ96_CH02056 f2879c5a0097ee23c01cb1ff6abb4971 249 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 12 227 1.8E-57 T 12-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 AMJ96_CH03597 f109597947e928e83bca1afaab19550b 275 SUPERFAMILY SSF49899 29 270 1.48E-47 T 12-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily AMJ96_CH03597 f109597947e928e83bca1afaab19550b 275 Pfam PF00722 Glycosyl hydrolases family 16 90 263 2.9E-21 T 12-10-2018 IPR000757 Glycoside hydrolase family 16 GO:0004553|GO:0005975 AMJ96_CH03597 f109597947e928e83bca1afaab19550b 275 Gene3D G3DSA:2.60.120.200 27 271 5.0E-52 T 12-10-2018 AMJ96_CH04096 c89de968ea94e1e54edf4a4abc959b87 2140 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 1793 2140 4.1E-53 T 12-10-2018 IPR007452 Translocation and assembly module TamB AMJ96_CH00599 6d9b5f5f5b72c1acc78f9d7126844c78 62 SUPERFAMILY SSF47598 8 50 1.41E-13 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMJ96_CH00599 6d9b5f5f5b72c1acc78f9d7126844c78 62 Gene3D G3DSA:1.10.1220.10 1 56 7.4E-22 T 12-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AMJ96_CH00599 6d9b5f5f5b72c1acc78f9d7126844c78 62 Pfam PF03869 Arc-like DNA binding domain 9 48 1.1E-11 T 12-10-2018 IPR005569 Arc-like DNA binding domain GO:0003677 AMJ96_CH00952 f5fee5c41317f9d39a6c89740012e0e1 396 Pfam PF06224 Winged helix DNA-binding domain 38 382 1.6E-76 T 12-10-2018 IPR009351 Protein of unknown function DUF1006 AMJ96_CH00980 ec3c65e54f85154ef7f08268b7546c8f 126 Pfam PF06170 Protein of unknown function (DUF983) 31 115 8.5E-34 T 12-10-2018 IPR009325 Protein of unknown function DUF983 AMJ96_CH04195 c769f9f74fc8ba9e653e0efa44145948 253 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 105 125 5.1E-57 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH04195 c769f9f74fc8ba9e653e0efa44145948 253 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 209 233 5.1E-57 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH04195 c769f9f74fc8ba9e653e0efa44145948 253 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 126 146 5.1E-57 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH04195 c769f9f74fc8ba9e653e0efa44145948 253 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 67 87 5.1E-57 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH04195 c769f9f74fc8ba9e653e0efa44145948 253 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 50 67 5.1E-57 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH04195 c769f9f74fc8ba9e653e0efa44145948 253 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 161 187 5.1E-57 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH04195 c769f9f74fc8ba9e653e0efa44145948 253 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 52 233 3.4E-83 T 12-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH04195 c769f9f74fc8ba9e653e0efa44145948 253 Pfam PF01578 Cytochrome C assembly protein 15 189 3.1E-34 T 12-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AMJ96_CH03426 6ac8b51cf6ff52db2f0c06b775903c24 153 Pfam PF08660 Oligosaccharide biosynthesis protein Alg14 like 61 143 2.4E-11 T 12-10-2018 IPR013969 Oligosaccharide biosynthesis protein Alg14-like GO:0006488 Reactome: R-HSA-446193|Reactome: R-HSA-5633231 AMJ96_CH03426 6ac8b51cf6ff52db2f0c06b775903c24 153 Gene3D G3DSA:3.40.50.2000 6 145 7.7E-6 T 12-10-2018 AMJ96_PA00010 4b78ddfa4e351f57eee536a3ea6c2435 344 SUPERFAMILY SSF51679 13 334 3.66E-47 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_PA00010 4b78ddfa4e351f57eee536a3ea6c2435 344 Pfam PF00296 Luciferase-like monooxygenase 15 291 4.3E-27 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMJ96_PA00010 4b78ddfa4e351f57eee536a3ea6c2435 344 Gene3D G3DSA:3.20.20.30 19 306 1.4E-47 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_PD00243 1383b84e2c3a4e6d31d0eba98517d242 199 Pfam PF04955 HupE / UreJ protein 13 193 8.5E-55 T 12-10-2018 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein AMJ96_PD00243 1383b84e2c3a4e6d31d0eba98517d242 199 PIRSF PIRSF016919 2 198 6.7E-55 T 12-10-2018 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein AMJ96_CH03389 ee7eb4c55a29cfd983554731fce6a514 180 Pfam PF13673 Acetyltransferase (GNAT) domain 98 171 3.0E-10 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH03389 ee7eb4c55a29cfd983554731fce6a514 180 Gene3D G3DSA:3.40.630.30 2 180 8.0E-25 T 12-10-2018 AMJ96_CH03389 ee7eb4c55a29cfd983554731fce6a514 180 SUPERFAMILY SSF55729 7 178 9.12E-25 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH04151 5dfc7e848303ec1eeee624167b339043 97 SUPERFAMILY SSF54909 1 92 4.02E-27 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel AMJ96_CH04151 5dfc7e848303ec1eeee624167b339043 97 Pfam PF03795 YCII-related domain 1 89 5.2E-24 T 12-10-2018 IPR005545 YCII-related AMJ96_CH04151 5dfc7e848303ec1eeee624167b339043 97 Gene3D G3DSA:3.30.70.1060 1 96 2.6E-29 T 12-10-2018 AMJ96_PA00206 0fcb308cc9a65e098d5e69a5be0aff93 365 Gene3D G3DSA:3.40.50.2300 51 144 2.9E-14 T 12-10-2018 AMJ96_PA00206 0fcb308cc9a65e098d5e69a5be0aff93 365 Pfam PF13407 Periplasmic binding protein domain 59 321 3.1E-23 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_PA00206 0fcb308cc9a65e098d5e69a5be0aff93 365 Gene3D G3DSA:3.40.50.2300 154 342 5.7E-12 T 12-10-2018 AMJ96_PA00206 0fcb308cc9a65e098d5e69a5be0aff93 365 SUPERFAMILY SSF53822 57 337 3.37E-34 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_CH03541 be2b8f8fe04bd6b4688a2f2fece096c5 300 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 284 2.6E-51 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH01553 8b0a660a859dd8647bc2982cff5fa772 158 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 145 1.2E-44 T 12-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 AMJ96_CH01553 8b0a660a859dd8647bc2982cff5fa772 158 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 154 82.154 T 12-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 AMJ96_CH01553 8b0a660a859dd8647bc2982cff5fa772 158 Pfam PF03477 ATP cone domain 50 134 2.3E-14 T 12-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 AMJ96_CH04247 7c359cd83b2af60981759e50c99b0376 412 PIRSF PIRSF028704 2 398 5.0E-98 T 12-10-2018 IPR014550 Uncharacterised conserved protein UCP028704, OpgC AMJ96_CH04247 7c359cd83b2af60981759e50c99b0376 412 Pfam PF10129 OpgC protein 23 377 2.9E-108 T 12-10-2018 IPR014550 Uncharacterised conserved protein UCP028704, OpgC AMJ96_PB00251 175d6dbc68f69b48462fdb549c35b529 117 Pfam PF12762 ISXO2-like transposase domain 4 67 6.5E-10 T 12-10-2018 IPR024445 ISXO2-like transposase domain AMJ96_CH00600 5b22d0988db303b6c050369262792e30 172 Gene3D G3DSA:1.10.1220.10 1 59 8.4E-18 T 12-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AMJ96_CH00600 5b22d0988db303b6c050369262792e30 172 Pfam PF03869 Arc-like DNA binding domain 11 49 3.2E-13 T 12-10-2018 IPR005569 Arc-like DNA binding domain GO:0003677 AMJ96_CH00600 5b22d0988db303b6c050369262792e30 172 SUPERFAMILY SSF47598 9 53 2.56E-11 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 AMJ96_CH02039 2283f9493500f48993e3022b219569ca 687 SUPERFAMILY SSF53067 3 355 2.72E-8 T 12-10-2018 AMJ96_CH02039 2283f9493500f48993e3022b219569ca 687 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 4 181 4.6E-49 T 12-10-2018 IPR008040 Hydantoinaseoxoprolinase, N-terminal Reactome: R-HSA-174403|Reactome: R-HSA-5578998 AMJ96_CH02039 2283f9493500f48993e3022b219569ca 687 Pfam PF01968 Hydantoinase/oxoprolinase 202 495 4.4E-81 T 12-10-2018 IPR002821 Hydantoinase A/oxoprolinase GO:0016787 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 AMJ96_CH03876 bb5a4b2adb19b398a51c2e3f36a7da7d 164 Gene3D G3DSA:3.40.630.30 10 147 6.6E-23 T 12-10-2018 AMJ96_CH03876 bb5a4b2adb19b398a51c2e3f36a7da7d 164 SUPERFAMILY SSF55729 11 135 9.47E-22 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH03876 bb5a4b2adb19b398a51c2e3f36a7da7d 164 Pfam PF00583 Acetyltransferase (GNAT) family 25 128 5.7E-13 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH01077 12fb71ff6c2fe1efdff213e68e9d6b94 568 SUPERFAMILY SSF55073 5 172 2.83E-41 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH01077 12fb71ff6c2fe1efdff213e68e9d6b94 568 Pfam PF07719 Tetratricopeptide repeat 407 436 4.6E-5 T 12-10-2018 IPR013105 Tetratricopeptide repeat 2 AMJ96_CH01077 12fb71ff6c2fe1efdff213e68e9d6b94 568 Gene3D G3DSA:1.25.40.10 301 548 3.4E-28 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01077 12fb71ff6c2fe1efdff213e68e9d6b94 568 SUPERFAMILY SSF48452 344 536 1.39E-18 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01077 12fb71ff6c2fe1efdff213e68e9d6b94 568 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 12 140 2.9E-11 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 AMJ96_CH01077 12fb71ff6c2fe1efdff213e68e9d6b94 568 SMART SM00028 437 470 200.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH01077 12fb71ff6c2fe1efdff213e68e9d6b94 568 SMART SM00028 472 505 56.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH01077 12fb71ff6c2fe1efdff213e68e9d6b94 568 SMART SM00028 403 436 0.0036 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AMJ96_CH01077 12fb71ff6c2fe1efdff213e68e9d6b94 568 Gene3D G3DSA:3.30.70.1230 5 179 4.4E-50 T 12-10-2018 IPR029787 Nucleotide cyclase AMJ96_CH03219 3a6794a82e1428cd323fd6dc74659e19 312 SUPERFAMILY SSF56300 12 287 4.34E-39 T 12-10-2018 AMJ96_CH03219 3a6794a82e1428cd323fd6dc74659e19 312 Pfam PF00149 Calcineurin-like phosphoesterase 12 240 3.7E-12 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AMJ96_CH03219 3a6794a82e1428cd323fd6dc74659e19 312 Gene3D G3DSA:3.60.21.10 11 256 7.2E-26 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like AMJ96_CH00636 f3b017408fa5ed38ed813b9dcb525eec 105 Gene3D G3DSA:1.10.790.20 1 104 3.5E-26 T 12-10-2018 AMJ96_CH00636 f3b017408fa5ed38ed813b9dcb525eec 105 PIRSF PIRSF031780 1 104 4.9E-20 T 12-10-2018 IPR009945 Protein of unknown function DUF1476 AMJ96_CH00636 f3b017408fa5ed38ed813b9dcb525eec 105 Pfam PF07345 Domain of unknown function (DUF1476) 1 99 8.3E-29 T 12-10-2018 IPR009945 Protein of unknown function DUF1476 AMJ96_CH02694 53534f6f5c451ab3114e148192af592b 346 Pfam PF11294 Protein of unknown function (DUF3095) 246 333 7.7E-31 T 12-10-2018 IPR021445 Protein of unknown function DUF3095 AMJ96_CH02694 53534f6f5c451ab3114e148192af592b 346 Pfam PF11294 Protein of unknown function (DUF3095) 14 240 1.3E-73 T 12-10-2018 IPR021445 Protein of unknown function DUF3095 AMJ96_CH04164 4dc1bda33d60dd9ea05e6b48ea493f0d 168 Gene3D G3DSA:3.40.630.30 7 168 8.2E-35 T 12-10-2018 AMJ96_CH04164 4dc1bda33d60dd9ea05e6b48ea493f0d 168 SUPERFAMILY SSF55729 6 146 2.06E-26 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH04164 4dc1bda33d60dd9ea05e6b48ea493f0d 168 Pfam PF00583 Acetyltransferase (GNAT) family 50 144 1.7E-13 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH03392 b176b0b665bfeba9e89e9d0ebdb3a308 332 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 320 1.7E-42 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH01576 4601d02759fd234e0f7f8b434b27475f 745 Gene3D G3DSA:1.25.40.10 298 489 1.2E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01576 4601d02759fd234e0f7f8b434b27475f 745 SUPERFAMILY SSF48452 432 718 1.55E-10 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH01576 4601d02759fd234e0f7f8b434b27475f 745 Gene3D G3DSA:1.25.40.10 587 738 3.8E-10 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH00208 bb7cc313b7cbfc3497927770f1878157 61 Pfam PF04964 Flp/Fap pilin component 8 53 1.7E-20 T 12-10-2018 IPR007047 Flp/Fap pilin component AMJ96_CH01574 a2b1ce49f672fb264268173ebebe1463 810 Pfam PF03170 Bacterial cellulose synthase subunit 93 689 1.9E-114 T 12-10-2018 IPR018513 Cellulose synthase BcsB, bacterial GO:0006011|GO:0016020 AMJ96_CH01574 a2b1ce49f672fb264268173ebebe1463 810 Gene3D G3DSA:2.60.120.260 93 224 1.4E-32 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily AMJ96_CH01574 a2b1ce49f672fb264268173ebebe1463 810 Gene3D G3DSA:2.60.120.260 381 524 1.1E-30 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily AMJ96_CH03614 4e552a7e5907c134b94e25c20d668ee7 164 Pfam PF03713 Domain of unknown function (DUF305) 106 155 8.6E-11 T 12-10-2018 IPR005183 Domain of unknown function DUF305 AMJ96_CH03614 4e552a7e5907c134b94e25c20d668ee7 164 Gene3D G3DSA:1.20.1260.10 52 160 3.2E-11 T 12-10-2018 IPR012347 Ferritin-like AMJ96_PB00421 c7d5590c2106d7c0aae638f575d5ff21 183 SUPERFAMILY SSF53098 22 173 1.07E-36 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily AMJ96_PB00421 c7d5590c2106d7c0aae638f575d5ff21 183 Gene3D G3DSA:3.30.420.10 19 152 2.0E-21 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 AMJ96_PB00421 c7d5590c2106d7c0aae638f575d5ff21 183 Pfam PF13683 Integrase core domain 104 169 1.5E-27 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 AMJ96_CH04362 cb1fbd55c2fb8fc6652a918fbdc31ab0 462 SUPERFAMILY SSF103473 32 459 1.28E-29 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH04362 cb1fbd55c2fb8fc6652a918fbdc31ab0 462 Gene3D G3DSA:1.20.1250.20 26 455 1.4E-20 T 12-10-2018 AMJ96_CH04362 cb1fbd55c2fb8fc6652a918fbdc31ab0 462 Pfam PF11700 Vacuole effluxer Atg22 like 64 148 5.7E-7 T 12-10-2018 IPR024671 Autophagy-related protein 22-like AMJ96_CH04362 cb1fbd55c2fb8fc6652a918fbdc31ab0 462 Pfam PF11700 Vacuole effluxer Atg22 like 152 455 3.9E-28 T 12-10-2018 IPR024671 Autophagy-related protein 22-like AMJ96_CH01295 8c68f219cafc7957b6c4047d8d39bc15 162 ProDom PD102069 BLL3070 ATU0920 MEMBRANE AGR_C_1676P PRECURSOR TRANSMEMBRANE R01001 MLL7648 SIGNAL 1 93 9.0E-19 T 12-10-2018 IPR035220 Protein of unknown function DUF5330 AMJ96_CH01295 8c68f219cafc7957b6c4047d8d39bc15 162 Pfam PF17264 Family of unknown function (DUF5330) 33 94 5.9E-28 T 12-10-2018 IPR035220 Protein of unknown function DUF5330 AMJ96_CH04299 327be48fe6b89740c60de0677360f5d7 392 Pfam PF00534 Glycosyl transferases group 1 191 316 3.5E-12 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 AMJ96_CH04299 327be48fe6b89740c60de0677360f5d7 392 SUPERFAMILY SSF53756 112 382 6.8E-29 T 12-10-2018 AMJ96_CH04299 327be48fe6b89740c60de0677360f5d7 392 Gene3D G3DSA:3.40.50.2000 167 389 3.4E-32 T 12-10-2018 AMJ96_CH00241 e15e88e9e23b9871a3017bf152f5073d 212 Gene3D G3DSA:3.40.630.30 32 176 1.2E-14 T 12-10-2018 AMJ96_CH00241 e15e88e9e23b9871a3017bf152f5073d 212 SUPERFAMILY SSF55729 32 170 9.17E-12 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH00241 e15e88e9e23b9871a3017bf152f5073d 212 Pfam PF13302 Acetyltransferase (GNAT) domain 33 168 2.2E-6 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH03880 57f0b63235ddd76c052ba112d7e28e66 196 SUPERFAMILY SSF55729 18 147 1.06E-18 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH03880 57f0b63235ddd76c052ba112d7e28e66 196 Pfam PF00583 Acetyltransferase (GNAT) family 45 144 8.3E-10 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH03880 57f0b63235ddd76c052ba112d7e28e66 196 Gene3D G3DSA:3.40.630.30 11 186 3.0E-35 T 12-10-2018 AMJ96_CH02221 d22d00682091f63b75b9ea34cecdd35d 273 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 59 102 0.0021 T 12-10-2018 IPR010221 VCBS repeat AMJ96_CH00039 c321b4f07fc94c164b9cd33bb4815506 203 Gene3D G3DSA:2.60.120.590 2 202 2.5E-54 T 12-10-2018 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily AMJ96_CH00039 c321b4f07fc94c164b9cd33bb4815506 203 SUPERFAMILY SSF51197 4 202 1.25E-55 T 12-10-2018 AMJ96_CH00039 c321b4f07fc94c164b9cd33bb4815506 203 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 7 199 4.4E-56 T 12-10-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like AMJ96_PD00202 04942de20474ff6cfc151344a3b4837f 376 Pfam PF01757 Acyltransferase family 39 353 4.4E-22 T 12-10-2018 IPR002656 Acyltransferase 3 GO:0016747 AMJ96_PC00343 71ae08c62c61e1d36bbef44a0fbaa95d 225 SUPERFAMILY SSF53335 36 210 1.21E-28 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_PC00343 71ae08c62c61e1d36bbef44a0fbaa95d 225 Gene3D G3DSA:3.40.50.150 46 223 2.8E-26 T 12-10-2018 AMJ96_CH02540 d963c4d680d7bc4581d9638317457781 310 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 10 304 2.0E-40 T 12-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AMJ96_CH03104 9d1fd6734294724ac57f7cf1859f17ef 202 Pfam PF06037 Bacterial protein of unknown function (DUF922) 37 195 5.4E-50 T 12-10-2018 IPR010321 Protein of unknown function DUF922 AMJ96_CH03104 9d1fd6734294724ac57f7cf1859f17ef 202 PIRSF PIRSF010521 1 202 2.8E-68 T 12-10-2018 IPR010321 Protein of unknown function DUF922 AMJ96_CH00441 9fae3f2281e9e2132647dbcd7aed0a7e 238 Gene3D G3DSA:1.10.150.450 29 96 1.1E-31 T 12-10-2018 AMJ96_CH00441 9fae3f2281e9e2132647dbcd7aed0a7e 238 SUPERFAMILY SSF56784 19 203 7.82E-27 T 12-10-2018 IPR036412 HAD-like superfamily AMJ96_CH00441 9fae3f2281e9e2132647dbcd7aed0a7e 238 TIGRFAM TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 18 195 7.4E-68 T 12-10-2018 IPR010237 Pyrimidine 5-nucleotidase AMJ96_CH00441 9fae3f2281e9e2132647dbcd7aed0a7e 238 Pfam PF13419 Haloacid dehalogenase-like hydrolase 20 195 2.4E-8 T 12-10-2018 AMJ96_CH00441 9fae3f2281e9e2132647dbcd7aed0a7e 238 Gene3D G3DSA:3.40.50.1000 21 200 1.1E-31 T 12-10-2018 IPR023214 HAD superfamily AMJ96_CH00441 9fae3f2281e9e2132647dbcd7aed0a7e 238 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 20 195 3.6E-9 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 AMJ96_CH00640 ec4beb137b24e2f46fd9df8182b2a451 130 SUPERFAMILY SSF55298 6 129 2.51E-36 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMJ96_CH00640 ec4beb137b24e2f46fd9df8182b2a451 130 Pfam PF01042 Endoribonuclease L-PSP 14 127 7.7E-29 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 AMJ96_CH00640 ec4beb137b24e2f46fd9df8182b2a451 130 Gene3D G3DSA:3.30.1330.40 1 130 1.2E-41 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMJ96_CH01869 467d81e6be8308ff36646eee9535d772 1053 Pfam PF05036 Sporulation related domain 973 1051 6.3E-13 T 12-10-2018 IPR007730 Sporulation-like domain GO:0042834 AMJ96_CH04161 d0ad86e7aca8da859d8510a17e5521fd 106 Pfam PF02325 YGGT family 20 97 1.1E-21 T 12-10-2018 IPR003425 CCB3/YggT GO:0016020 AMJ96_PC00313 1b369fd20df82ad1d69e582349ede5c1 1202 Pfam PF01968 Hydantoinase/oxoprolinase 205 494 1.0E-116 T 12-10-2018 IPR002821 Hydantoinase A/oxoprolinase GO:0016787 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 AMJ96_PC00313 1b369fd20df82ad1d69e582349ede5c1 1202 Pfam PF02538 Hydantoinase B/oxoprolinase 690 1202 3.2E-192 T 12-10-2018 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 AMJ96_PC00313 1b369fd20df82ad1d69e582349ede5c1 1202 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 7 186 5.5E-60 T 12-10-2018 IPR008040 Hydantoinaseoxoprolinase, N-terminal Reactome: R-HSA-174403|Reactome: R-HSA-5578998 AMJ96_PB00234 31e6c5e2ff0bb278f5e088cde0534b3a 81 ProDom PD019155 PLASMID TRAH Y4DP RIORF115 DTR CONJUGAL TRANSFER TIORF112 SYSTEM PROTEIN 1 68 3.0E-18 T 12-10-2018 AMJ96_PB00234 31e6c5e2ff0bb278f5e088cde0534b3a 81 Pfam PF06871 TraH_2 2 76 4.1E-25 T 12-10-2018 IPR010680 TraH-2 AMJ96_CH03454 9e481eef8e9b997bdd555a8b76d67ee5 375 Pfam PF12698 ABC-2 family transporter protein 28 367 3.9E-46 T 12-10-2018 AMJ96_CH00257 ed9a8ae93fe5cf6d03783d2d7eb951dc 76 Pfam PF07362 Post-segregation antitoxin CcdA 6 76 1.4E-25 T 12-10-2018 IPR009956 Post-segregation antitoxin CcdA AMJ96_CH02712 3bca82970297eed50be5d5b7d16ceaef 121 Pfam PF13316 Protein of unknown function (DUF4087) 18 113 3.7E-33 T 12-10-2018 IPR025145 Protein of unknown function DUF4087 AMJ96_CH02732 6dd781491de902db2b285d68dc34a11c 290 Pfam PF11769 Protein of unknown function (DUF3313) 30 220 2.3E-45 T 12-10-2018 IPR021747 Protein of unknown function DUF3313 AMJ96_CH02700 1130bafb5a17c5d2e223ea5c1715c091 442 Pfam PF06904 Extensin-like protein C-terminus 263 441 3.8E-52 T 12-10-2018 IPR009683 Extensin-like, C-terminal AMJ96_PD00636 7f4bc075fc0e706ebb6952a43a7727f3 214 ProDom PD095314 PLASMID MEMBRANE MLL6193 PRECURSOR TRANSMEMBRANE Y4JG SIGNAL 87 200 1.0E-17 T 12-10-2018 IPR020232 Uncharacterised protein family, Y4jG, transmembrane AMJ96_CH01974 b14c5f4b58efcdeaef6e85d3df5e92dc 156 SUPERFAMILY SSF55298 4 154 8.01E-54 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMJ96_CH01974 b14c5f4b58efcdeaef6e85d3df5e92dc 156 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 8 152 8.0E-36 T 12-10-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AMJ96_CH01974 b14c5f4b58efcdeaef6e85d3df5e92dc 156 Gene3D G3DSA:3.30.1330.40 1 155 7.7E-64 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMJ96_CH00823 850d9e1fb8f8338dbeb8c8a1a5911fb8 99 Pfam PF06568 Domain of unknown function (DUF1127) 38 64 6.6E-6 T 12-10-2018 IPR009506 Protein of unknown function DUF1127 AMJ96_PC00181 9c95ea9ff076507248c1afcfca182750 249 Pfam PF07812 TfuA-like protein 46 165 3.8E-40 T 12-10-2018 IPR012924 TfuA-like, core AMJ96_CH01645 9e61f897546d7c1f15db47f3a7e040b5 204 Gene3D G3DSA:1.20.120.1200 4 170 5.3E-43 T 12-10-2018 AMJ96_CH01645 9e61f897546d7c1f15db47f3a7e040b5 204 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 18 168 6.6E-38 T 12-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AMJ96_CH01304 89462d2269f1e162417c83d19cdf8afc 183 PIRSF PIRSF010244 1 181 1.7E-59 T 12-10-2018 IPR014456 Uncharacterised conserved protein UCP010244, integral membrane protein AMJ96_CH03735 82b199e56d3f5fa81a8e3d81dda84cf8 125 Pfam PF05164 Cell division protein ZapA 4 97 1.3E-21 T 12-10-2018 IPR007838 Cell division protein ZapA-like AMJ96_CH03735 82b199e56d3f5fa81a8e3d81dda84cf8 125 SUPERFAMILY SSF102829 3 88 5.89E-22 T 12-10-2018 IPR036192 Cell division protein ZapA-like superfamily AMJ96_CH00316 2c999d1910cbdfe0f84330a39200bca6 512 PIRSF PIRSF028099 4 512 3.5E-178 T 12-10-2018 IPR010538 Di-haem oxidoreductase, putative peroxidase AMJ96_CH00316 2c999d1910cbdfe0f84330a39200bca6 512 SUPERFAMILY SSF46626 371 512 3.48E-25 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_CH00316 2c999d1910cbdfe0f84330a39200bca6 512 Gene3D G3DSA:1.10.760.10 367 512 6.5E-9 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 AMJ96_CH00316 2c999d1910cbdfe0f84330a39200bca6 512 Pfam PF06537 Di-haem oxidoreductase, putative peroxidase 66 512 2.0E-131 T 12-10-2018 IPR010538 Di-haem oxidoreductase, putative peroxidase AMJ96_CH00153 7286617ff411bc46fae1d94143fcdc46 228 SMART SM00287 23 85 2.7E-6 T 12-10-2018 IPR003646 SH3-like domain, bacterial-type AMJ96_CH00153 7286617ff411bc46fae1d94143fcdc46 228 Pfam PF08239 Bacterial SH3 domain 31 82 8.3E-12 T 12-10-2018 IPR003646 SH3-like domain, bacterial-type AMJ96_CH00153 7286617ff411bc46fae1d94143fcdc46 228 Gene3D G3DSA:2.30.30.40 27 83 2.3E-14 T 12-10-2018 AMJ96_PD00176 a2c9a3c3eeb6c25b4acbaa358a1cf475 362 Pfam PF13524 Glycosyl transferases group 1 255 346 1.4E-20 T 12-10-2018 AMJ96_PD00176 a2c9a3c3eeb6c25b4acbaa358a1cf475 362 SUPERFAMILY SSF53756 2 352 3.24E-10 T 12-10-2018 AMJ96_PD00337 35bd5f4b7d1a1612cc3540c8e76e361c 305 SUPERFAMILY SSF103481 51 151 6.28E-14 T 12-10-2018 AMJ96_PD00337 35bd5f4b7d1a1612cc3540c8e76e361c 305 Pfam PF00892 EamA-like transporter family 16 148 8.3E-13 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_PD00337 35bd5f4b7d1a1612cc3540c8e76e361c 305 Pfam PF00892 EamA-like transporter family 159 285 6.7E-11 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AMJ96_PD00337 35bd5f4b7d1a1612cc3540c8e76e361c 305 SUPERFAMILY SSF103481 190 289 6.8E-13 T 12-10-2018 AMJ96_PD00011 9ea2122d6d2b8fc9374111b901a5b170 191 Gene3D G3DSA:2.30.110.10 1 190 6.0E-39 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 AMJ96_PD00011 9ea2122d6d2b8fc9374111b901a5b170 191 SUPERFAMILY SSF50475 9 186 1.36E-27 T 12-10-2018 AMJ96_PD00011 9ea2122d6d2b8fc9374111b901a5b170 191 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 23 100 1.2E-11 T 12-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AMJ96_PB00242 614b5907558031193282682e7bea7834 628 Pfam PF05947 Type VI secretion system, TssF 6 626 3.7E-210 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like AMJ96_PB00242 614b5907558031193282682e7bea7834 628 PIRSF PIRSF028304 1 628 2.2E-174 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like AMJ96_PB00242 614b5907558031193282682e7bea7834 628 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 5 627 2.2E-186 T 12-10-2018 IPR010272 Type VI secretion system, TssF-like AMJ96_CH03937 a97c40427c943dbd4d62a54ab5d1f205 290 SUPERFAMILY SSF161098 55 278 2.35E-49 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03937 a97c40427c943dbd4d62a54ab5d1f205 290 Gene3D G3DSA:1.10.3720.10 49 288 1.6E-54 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03937 a97c40427c943dbd4d62a54ab5d1f205 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 288 9.8E-10 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PC00469 29f6c775406aa95ed7c07f2721a98825 404 Pfam PF03428 Replication protein C N-terminal domain 13 186 4.7E-71 T 12-10-2018 IPR005090 Replication protein C AMJ96_PC00469 29f6c775406aa95ed7c07f2721a98825 404 Pfam PF11800 Replication protein C C-terminal region 195 396 8.5E-82 T 12-10-2018 IPR021760 Replication protein-C C-terminal AMJ96_CH03686 81278fb6939f7654c617ab423a889ef3 275 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 59 110 4.4E-10 T 12-10-2018 IPR010221 VCBS repeat AMJ96_PD00060 a4078b7a21002f2c8ae5c13601f4b01f 214 Pfam PF06532 Protein of unknown function (DUF1109) 11 214 2.5E-63 T 12-10-2018 IPR009495 Anti-sigma-F factor NrsF AMJ96_CH03078 63513cb348722e5743f5a4f4d08bee7d 247 Gene3D G3DSA:3.40.50.12500 1 243 1.9E-84 T 12-10-2018 AMJ96_CH03078 63513cb348722e5743f5a4f4d08bee7d 247 Pfam PF01177 Asp/Glu/Hydantoin racemase 5 209 1.8E-13 T 12-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AMJ96_PD00460 ad74f026f243328bc72d8f139b1227ef 233 Gene3D G3DSA:3.40.50.12500 47 232 3.2E-9 T 12-10-2018 AMJ96_CH02065 c821bd7e4c43866a9a7d39bda0508d6f 168 Pfam PF01936 NYN domain 1 58 9.5E-10 T 12-10-2018 IPR021139 NYN domain, limkain-b1-type AMJ96_CH02065 c821bd7e4c43866a9a7d39bda0508d6f 168 Gene3D G3DSA:3.40.50.1010 1 66 1.0E-5 T 12-10-2018 AMJ96_CH04215 329f4957f58acd2bcee76ee8486ea0e2 173 SUPERFAMILY SSF141523 131 172 3.66E-5 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like AMJ96_PB00200 a14eb2f738ded37bdc21ae60363cc669 192 Pfam PF13470 PIN domain 9 115 1.3E-12 T 12-10-2018 IPR002716 PIN domain AMJ96_PB00149 04b352370f0cb6c877c7ca5c7347db7b 399 Pfam PF13407 Periplasmic binding protein domain 75 297 3.0E-36 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_PB00149 04b352370f0cb6c877c7ca5c7347db7b 399 Gene3D G3DSA:3.40.50.2300 73 185 1.7E-14 T 12-10-2018 AMJ96_PB00149 04b352370f0cb6c877c7ca5c7347db7b 399 SUPERFAMILY SSF53822 72 343 9.76E-42 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PB00149 04b352370f0cb6c877c7ca5c7347db7b 399 Gene3D G3DSA:3.40.50.2300 186 300 8.8E-20 T 12-10-2018 AMJ96_PC00218 dbb8c7defc95a9e7a516d9ce63b5a0d1 78 Pfam PF11373 Protein of unknown function (DUF3175) 1 74 6.4E-37 T 12-10-2018 IPR021513 Ralstonia phage RSL1, Orf186 AMJ96_CH01585 eec312d9ba349e00485bb99c5dbaa038 585 SUPERFAMILY SSF48208 165 574 1.87E-35 T 12-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 AMJ96_CH03936 aa39301e3fdb71ace815e95fff6cdaa6 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 268 7.7E-19 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH03936 aa39301e3fdb71ace815e95fff6cdaa6 276 Gene3D G3DSA:1.10.3720.10 2 268 5.5E-52 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03936 aa39301e3fdb71ace815e95fff6cdaa6 276 SUPERFAMILY SSF161098 10 276 1.18E-61 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH01148 5e27fdeb725bff45cd613e60ea4acfc6 230 Pfam PF08889 WbqC-like protein family 8 223 6.9E-80 T 12-10-2018 IPR014985 WbqC-like protein family AMJ96_CH00160 3ec2a3670d61ca30fdcd122f0bcbc7e2 168 SUPERFAMILY SSF81301 6 164 1.08E-43 T 12-10-2018 AMJ96_CH00160 3ec2a3670d61ca30fdcd122f0bcbc7e2 168 Gene3D G3DSA:3.30.460.10 1 167 1.9E-43 T 12-10-2018 AMJ96_CH00160 3ec2a3670d61ca30fdcd122f0bcbc7e2 168 Pfam PF04229 GrpB protein 4 161 4.8E-39 T 12-10-2018 IPR007344 GrpB/Dephospho-CoA kinase AMJ96_CH03304 4c802fc07f3a934e86b1893146a87275 461 Pfam PF00083 Sugar (and other) transporter 69 459 6.7E-51 T 12-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AMJ96_CH03304 4c802fc07f3a934e86b1893146a87275 461 Gene3D G3DSA:1.20.1250.20 31 460 1.3E-89 T 12-10-2018 AMJ96_CH03304 4c802fc07f3a934e86b1893146a87275 461 SUPERFAMILY SSF103473 22 458 2.62E-83 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_CH03304 4c802fc07f3a934e86b1893146a87275 461 ProSitePatterns PS00217 Sugar transport proteins signature 2. 133 158 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMJ96_CH02392 0d1a109eb003467209cff0b3ba4fffd6 269 Pfam PF06353 Protein of unknown function (DUF1062) 98 230 4.2E-45 T 12-10-2018 IPR009412 Protein of unknown function DUF1062 AMJ96_CH02040 b4bf2cefb6fe0861c5242a7a7318e801 558 Pfam PF02538 Hydantoinase B/oxoprolinase 10 520 1.8E-143 T 12-10-2018 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 AMJ96_CH02332 18e0ff1606de31c398ee1a7b78c05180 241 Pfam PF10016 Predicted secreted protein (DUF2259) 43 240 2.3E-45 T 12-10-2018 IPR018725 Protein of unknown function DUF2259, secreted AMJ96_CH02401 e4edc24cdff975ecef6029600e426bfd 208 PIRSF PIRSF010521 2 204 1.4E-61 T 12-10-2018 IPR010321 Protein of unknown function DUF922 AMJ96_CH02401 e4edc24cdff975ecef6029600e426bfd 208 Pfam PF06037 Bacterial protein of unknown function (DUF922) 36 195 1.1E-51 T 12-10-2018 IPR010321 Protein of unknown function DUF922 AMJ96_PA00082 fa108ae4b0396f5279238ecd453dd09f 536 SUPERFAMILY SSF52096 275 527 4.23E-82 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_PA00082 fa108ae4b0396f5279238ecd453dd09f 536 SUPERFAMILY SSF52096 25 267 1.34E-71 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily AMJ96_PA00082 fa108ae4b0396f5279238ecd453dd09f 536 Gene3D G3DSA:3.90.226.10 1 271 6.1E-97 T 12-10-2018 AMJ96_PA00082 fa108ae4b0396f5279238ecd453dd09f 536 Pfam PF01039 Carboxyl transferase domain 48 524 7.7E-146 T 12-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 AMJ96_PA00082 fa108ae4b0396f5279238ecd453dd09f 536 Gene3D G3DSA:3.90.226.10 273 536 4.0E-97 T 12-10-2018 AMJ96_PB00227 661c665e39219a857d29fde67408158b 64 SUPERFAMILY SSF47413 17 62 4.64E-5 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 AMJ96_CH02421 c4cfd84998c08228dc0ac14feccaa643 123 SUPERFAMILY SSF54593 16 118 1.04E-11 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_CH02421 c4cfd84998c08228dc0ac14feccaa643 123 Gene3D G3DSA:3.10.180.10 5 118 1.1E-20 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AMJ96_PD00676 d7807a7a5c86814fb40f4c8e0ceab245 310 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 39 252 6.0E-51 T 12-10-2018 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 AMJ96_CH01557 19897de521a771ea42ce263a65a7075b 167 Gene3D G3DSA:2.60.120.10 20 154 1.5E-34 T 12-10-2018 IPR014710 RmlC-like jelly roll fold AMJ96_CH01557 19897de521a771ea42ce263a65a7075b 167 Pfam PF07883 Cupin domain 47 115 1.4E-17 T 12-10-2018 IPR013096 Cupin 2, conserved barrel AMJ96_CH01557 19897de521a771ea42ce263a65a7075b 167 SUPERFAMILY SSF51182 7 135 5.4E-22 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily AMJ96_PD00398 9bfb0ef4d5cd37792f757611a3f15d9a 294 Gene3D G3DSA:1.10.3720.10 16 283 9.5E-61 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00398 9bfb0ef4d5cd37792f757611a3f15d9a 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 286 2.3E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00398 9bfb0ef4d5cd37792f757611a3f15d9a 294 SUPERFAMILY SSF161098 22 288 2.22E-66 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH04112 a0c8518d9608c48cbcbe77931a1a9d90 268 SUPERFAMILY SSF161098 64 247 1.83E-24 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH04112 a0c8518d9608c48cbcbe77931a1a9d90 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 257 2.5E-24 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH04112 a0c8518d9608c48cbcbe77931a1a9d90 268 Gene3D G3DSA:1.10.3720.10 63 258 1.3E-20 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PB00269 f53c8522ffd34f95b5329dd960aa77e9 892 Gene3D G3DSA:3.40.395.10 536 742 1.3E-67 T 12-10-2018 AMJ96_PB00269 f53c8522ffd34f95b5329dd960aa77e9 892 Pfam PF02902 Ulp1 protease family, C-terminal catalytic domain 557 723 5.0E-9 T 12-10-2018 IPR003653 Ulp1 protease family, C-terminal catalytic domain GO:0006508|GO:0008234 AMJ96_PB00269 f53c8522ffd34f95b5329dd960aa77e9 892 SUPERFAMILY SSF54001 545 717 4.32E-25 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily AMJ96_CH02360 fb3b913d5364ae02434f33bd1e987f73 297 Pfam PF04444 Catechol dioxygenase N terminus 22 91 1.7E-19 T 12-10-2018 IPR007535 Catechol dioxygenase, N-terminal GO:0005506|GO:0009712|GO:0018576|GO:0055114 AMJ96_CH02360 fb3b913d5364ae02434f33bd1e987f73 297 SUPERFAMILY SSF49482 4 287 3.4E-82 T 12-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMJ96_CH02360 fb3b913d5364ae02434f33bd1e987f73 297 Pfam PF00775 Dioxygenase 103 264 1.6E-40 T 12-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 AMJ96_CH02360 fb3b913d5364ae02434f33bd1e987f73 297 Gene3D G3DSA:2.60.130.10 2 287 3.7E-97 T 12-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 AMJ96_CH02216 c1a93845d80fc95b712a8fafa0c820e1 262 Pfam PF01925 Sulfite exporter TauE/SafE 9 258 9.0E-44 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMJ96_CH01783 e8dcf262e4a32e63bc96c2a2d996699f 132 Pfam PF06823 Protein of unknown function (DUF1236) 70 132 1.1E-20 T 12-10-2018 IPR009642 Protein of unknown function DUF1236 AMJ96_CH03749 0ae6f71a78127fe460e32f18bad7a494 171 Gene3D G3DSA:1.10.8.930 14 145 1.6E-46 T 12-10-2018 IPR038301 AraC-like superfamily AMJ96_CH03749 0ae6f71a78127fe460e32f18bad7a494 171 Pfam PF07323 Protein of unknown function (DUF1465) 14 168 1.7E-60 T 12-10-2018 IPR010848 Protein of unknown function DUF1465 AMJ96_CH01887 918fe0df4175f7894b37703fa897d61b 128 Gene3D G3DSA:3.40.1230.10 12 128 1.9E-38 T 12-10-2018 IPR036748 MTH938-like superfamily AMJ96_CH01887 918fe0df4175f7894b37703fa897d61b 128 Pfam PF04430 Protein of unknown function (DUF498/DUF598) 18 126 9.4E-30 T 12-10-2018 IPR007523 NDUFAF3/Mth938 domain-containing protein AMJ96_CH01887 918fe0df4175f7894b37703fa897d61b 128 SUPERFAMILY SSF64076 5 127 1.7E-39 T 12-10-2018 IPR036748 MTH938-like superfamily AMJ96_CH00315 133c350298b938a8a398b534b8a18541 366 Gene3D G3DSA:1.20.1420.20 28 366 4.7E-72 T 12-10-2018 IPR038352 Imelysin-like domain superfamily AMJ96_CH00315 133c350298b938a8a398b534b8a18541 366 Pfam PF09375 Imelysin 48 332 1.9E-46 T 12-10-2018 IPR018976 Imelysin-like domain AMJ96_PD00403 1e862c9a7700098a101eb926e14286ea 92 Gene3D G3DSA:3.30.2310.20 1 92 1.6E-13 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily AMJ96_PD00403 1e862c9a7700098a101eb926e14286ea 92 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 3 90 1.4E-15 T 12-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family AMJ96_CH00712 db36b6e7f29963509d1b2c52eb128dcc 302 Gene3D G3DSA:1.20.1330.10 44 177 1.2E-16 T 12-10-2018 AMJ96_CH00712 db36b6e7f29963509d1b2c52eb128dcc 302 Gene3D G3DSA:1.20.58.1830 4 32 1.2E-16 T 12-10-2018 AMJ96_CH00712 db36b6e7f29963509d1b2c52eb128dcc 302 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 137 9.8E-30 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMJ96_CH00712 db36b6e7f29963509d1b2c52eb128dcc 302 Pfam PF00700 Bacterial flagellin C-terminal helical region 216 299 6.0E-17 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AMJ96_CH00712 db36b6e7f29963509d1b2c52eb128dcc 302 SUPERFAMILY SSF64518 1 301 8.5E-65 T 12-10-2018 AMJ96_CH00712 db36b6e7f29963509d1b2c52eb128dcc 302 PRINTS PR00207 Flagellin signature 36 53 6.5E-5 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AMJ96_CH00712 db36b6e7f29963509d1b2c52eb128dcc 302 PRINTS PR00207 Flagellin signature 107 130 6.5E-5 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AMJ96_CH02425 a05bb13b66e071541395b9c29ec9bda8 229 TIGRFAM TIGR02476 BluB: 5,6-dimethylbenzimidazole synthase 15 219 5.8E-87 T 12-10-2018 IPR012825 5,6-dimethylbenzimidazole synthase BluB KEGG: 00740+1.13.11.79|MetaCyc: PWY-5523 AMJ96_CH02425 a05bb13b66e071541395b9c29ec9bda8 229 Gene3D G3DSA:3.40.109.10 2 201 5.0E-56 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMJ96_CH02425 a05bb13b66e071541395b9c29ec9bda8 229 SUPERFAMILY SSF55469 23 225 6.67E-49 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AMJ96_CH02425 a05bb13b66e071541395b9c29ec9bda8 229 Pfam PF00881 Nitroreductase family 27 193 4.5E-27 T 12-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AMJ96_PB00164 3a2a9acd85fb148fd6c0ac3d4ea3fec8 373 Pfam PF00296 Luciferase-like monooxygenase 21 342 1.4E-73 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AMJ96_PB00164 3a2a9acd85fb148fd6c0ac3d4ea3fec8 373 SUPERFAMILY SSF51679 17 371 1.44E-81 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_PB00164 3a2a9acd85fb148fd6c0ac3d4ea3fec8 373 Gene3D G3DSA:3.20.20.30 17 370 4.6E-83 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 AMJ96_CH02941 542adabc29a88f11016a06a323cf3a5d 162 Pfam PF02082 Transcriptional regulator 1 83 1.9E-22 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type AMJ96_CH02941 542adabc29a88f11016a06a323cf3a5d 162 Gene3D G3DSA:1.10.10.10 1 148 1.7E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH02941 542adabc29a88f11016a06a323cf3a5d 162 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 138 3.4E-29 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type AMJ96_CH02941 542adabc29a88f11016a06a323cf3a5d 162 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 12-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site AMJ96_CH02941 542adabc29a88f11016a06a323cf3a5d 162 SUPERFAMILY SSF46785 4 141 2.78E-29 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH03616 0a39a87a8067be9ffcc9d3449cc9527d 100 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 7 95 6.2E-24 T 12-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like AMJ96_CH03616 0a39a87a8067be9ffcc9d3449cc9527d 100 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 100 20.094 T 12-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 AMJ96_PD00006 8d50f50c564950805216547e3decad9c 352 Pfam PF01548 Transposase 9 148 6.1E-25 T 12-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AMJ96_PD00006 8d50f50c564950805216547e3decad9c 352 Pfam PF02371 Transposase IS116/IS110/IS902 family 190 272 1.6E-20 T 12-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AMJ96_PB00208 ddf95c6a8be2974bf7d0e2c415a7790f 135 SMART SM00773 40 118 8.6E-31 T 12-10-2018 IPR008893 WGR domain AMJ96_PB00208 ddf95c6a8be2974bf7d0e2c415a7790f 135 SUPERFAMILY SSF142921 38 114 9.55E-25 T 12-10-2018 IPR036930 WGR domain superfamily AMJ96_PB00208 ddf95c6a8be2974bf7d0e2c415a7790f 135 Gene3D G3DSA:2.20.140.10 25 122 1.7E-10 T 12-10-2018 IPR036930 WGR domain superfamily AMJ96_PB00208 ddf95c6a8be2974bf7d0e2c415a7790f 135 Pfam PF05406 WGR domain 40 116 3.3E-26 T 12-10-2018 IPR008893 WGR domain AMJ96_PC00285 e07f81ed48b0a556a7e5bbdf628d973b 317 Gene3D G3DSA:3.40.190.290 97 291 8.1E-35 T 12-10-2018 AMJ96_PC00285 e07f81ed48b0a556a7e5bbdf628d973b 317 SUPERFAMILY SSF53850 96 295 9.05E-39 T 12-10-2018 AMJ96_PC00285 e07f81ed48b0a556a7e5bbdf628d973b 317 Gene3D G3DSA:1.10.10.10 7 94 3.4E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_PC00285 e07f81ed48b0a556a7e5bbdf628d973b 317 SUPERFAMILY SSF46785 3 117 3.14E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_PC00285 e07f81ed48b0a556a7e5bbdf628d973b 317 Pfam PF03466 LysR substrate binding domain 95 292 6.5E-34 T 12-10-2018 IPR005119 LysR, substrate-binding AMJ96_PC00285 e07f81ed48b0a556a7e5bbdf628d973b 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 3.3E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AMJ96_PD00565 13102a99497bfe524080f8b4f59b2a52 338 Pfam PF13407 Periplasmic binding protein domain 31 290 3.1E-43 T 12-10-2018 IPR025997 Periplasmic binding protein AMJ96_PD00565 13102a99497bfe524080f8b4f59b2a52 338 SUPERFAMILY SSF53822 29 309 6.16E-44 T 12-10-2018 IPR028082 Periplasmic binding protein-like I AMJ96_PD00565 13102a99497bfe524080f8b4f59b2a52 338 Gene3D G3DSA:3.40.50.2300 24 123 4.4E-17 T 12-10-2018 AMJ96_PD00565 13102a99497bfe524080f8b4f59b2a52 338 Gene3D G3DSA:3.40.50.2300 129 317 1.8E-21 T 12-10-2018 AMJ96_PD00101 d3596a0bc1c876d95a256ed55d4d9666 434 SUPERFAMILY SSF53850 47 432 4.67E-52 T 12-10-2018 AMJ96_PD00101 d3596a0bc1c876d95a256ed55d4d9666 434 Pfam PF13416 Bacterial extracellular solute-binding protein 63 369 8.0E-32 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein AMJ96_PD00101 d3596a0bc1c876d95a256ed55d4d9666 434 Gene3D G3DSA:3.40.190.10 42 433 3.2E-55 T 12-10-2018 AMJ96_CH02134 5feee0eda6eec4d3f9f1cc774de03ad3 400 Pfam PF02687 FtsX-like permease family 306 393 5.2E-9 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AMJ96_CH02134 5feee0eda6eec4d3f9f1cc774de03ad3 400 Pfam PF12704 MacB-like periplasmic core domain 20 239 1.8E-41 T 12-10-2018 IPR025857 MacB-like periplasmic core domain AMJ96_PB00341 9d7975ed03bce12b968cda6bf8f300e8 123 Pfam PF11089 Exopolysaccharide production repressor 53 90 1.4E-13 T 12-10-2018 IPR024239 Exopolysaccharide production repressor AMJ96_PB00341 9d7975ed03bce12b968cda6bf8f300e8 123 ProDom PD594998 EXOPOLYSACCHARIDE REPRESSOR PLASMID PRODUCTION TRANSMEMBRANE MEMBRANE NODULATION SYNTHESIS SYRA PSIA 38 91 4.0E-22 T 12-10-2018 IPR024239 Exopolysaccharide production repressor AMJ96_CH03672 35c190beb52f720679d5265a83cf2f18 69 Pfam PF09489 Probable cobalt transporter subunit (CbtB) 21 69 8.7E-14 T 12-10-2018 IPR012667 Cobalt transporter subunit CbtB, putative AMJ96_CH03665 06c480b9e222f449a068e0f28a9b65a9 153 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 12 144 8.8E-19 T 12-10-2018 IPR009936 Protein of unknown function DUF1468 AMJ96_CH02100 a1fabafec2c3f3e96f206ab26977653d 159 Pfam PF11158 Protein of unknown function (DUF2938) 9 157 3.0E-66 T 12-10-2018 IPR021329 Protein of unknown function DUF2938 AMJ96_CH01503 429e5edcbe46572ad91e26a75c28ecb9 776 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 11 766 16.935 T 12-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 AMJ96_CH01503 429e5edcbe46572ad91e26a75c28ecb9 776 Pfam PF04453 Organic solvent tolerance protein 310 690 4.1E-77 T 12-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 AMJ96_PB00086 0c805302a138b77027a367ccaa8e8b75 72 Gene3D G3DSA:3.30.450.20 34 72 3.7E-9 T 12-10-2018 AMJ96_PD00388 96d9a057d10b961df2638dd6058b0cec 348 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 167 340 1.1E-16 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00388 96d9a057d10b961df2638dd6058b0cec 348 SUPERFAMILY SSF161098 20 348 6.13E-64 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00170 a438be977bc8c4394da6e1e3654fb729 302 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 110 149 1.6E-9 T 12-10-2018 IPR031571 Flp pilus assembly protein RcpC/CpaB domain AMJ96_PC00170 a438be977bc8c4394da6e1e3654fb729 302 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 217 284 5.2E-11 T 12-10-2018 IPR031571 Flp pilus assembly protein RcpC/CpaB domain AMJ96_CH02884 3c8724a14d1bf00755a763b1d337af46 256 SUPERFAMILY SSF55811 108 251 8.67E-9 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 AMJ96_CH02884 3c8724a14d1bf00755a763b1d337af46 256 Gene3D G3DSA:3.90.79.10 112 248 9.7E-7 T 12-10-2018 AMJ96_CH03519 5af57386be714b8ed2322dd806073cf1 223 Pfam PF09601 Protein of unknown function (DUF2459) 44 211 4.2E-47 T 12-10-2018 IPR011727 Conserved hypothetical protein CHP02117 AMJ96_CH03519 5af57386be714b8ed2322dd806073cf1 223 TIGRFAM TIGR02117 chp_urease_rgn: conserved hypothetical protein 12 219 1.4E-84 T 12-10-2018 IPR011727 Conserved hypothetical protein CHP02117 AMJ96_PD00579 6c01312e6af77685dc17ad0f13c7d3d2 137 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 7 24 3.3E-6 T 12-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AMJ96_PD00579 6c01312e6af77685dc17ad0f13c7d3d2 137 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 66 83 3.3E-6 T 12-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AMJ96_PD00579 6c01312e6af77685dc17ad0f13c7d3d2 137 Gene3D G3DSA:3.40.50.720 1 136 5.5E-32 T 12-10-2018 AMJ96_PD00579 6c01312e6af77685dc17ad0f13c7d3d2 137 SUPERFAMILY SSF51735 1 134 1.55E-28 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PD00579 6c01312e6af77685dc17ad0f13c7d3d2 137 Pfam PF13460 NAD(P)H-binding 7 126 1.4E-13 T 12-10-2018 IPR016040 NAD(P)-binding domain AMJ96_CH02902 389ee1e739584f84d456dba7a8192a04 247 TIGRFAM TIGR04290 meth_Rta_06860: methyltransferase, Rta_06860 family 7 230 1.5E-114 T 12-10-2018 IPR027554 Methyltransferase, Rta_06860 family AMJ96_CH02902 389ee1e739584f84d456dba7a8192a04 247 Pfam PF08003 Protein of unknown function (DUF1698) 2 219 5.2E-20 T 12-10-2018 IPR027555 tRNA (mo5U34)-methyltransferase-like AMJ96_CH02902 389ee1e739584f84d456dba7a8192a04 247 Gene3D G3DSA:3.40.50.150 39 231 5.5E-25 T 12-10-2018 AMJ96_CH02902 389ee1e739584f84d456dba7a8192a04 247 SUPERFAMILY SSF53335 41 221 2.69E-27 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH01122 95a63ad6f67d57745ca37c045dbd4053 523 Gene3D G3DSA:3.40.50.300 7 208 8.4E-43 T 12-10-2018 AMJ96_CH01895 60f10a4546634ca6ab19c102418dd5ac 364 Pfam PF09925 Predicted membrane protein (DUF2157) 13 149 1.0E-30 T 12-10-2018 IPR018677 Domain of unknown function DUF2157 AMJ96_CH02805 65e500527f1a4c3bde375ee35ec5ecbf 277 SUPERFAMILY SSF51658 10 188 1.06E-12 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily AMJ96_CH02805 65e500527f1a4c3bde375ee35ec5ecbf 277 Gene3D G3DSA:3.20.20.150 7 224 3.9E-12 T 12-10-2018 AMJ96_CH00657 8a74c9f99cbbd15e4e4db5a8e1bc9a2a 76 Pfam PF09954 Uncharacterized protein conserved in bacteria (DUF2188) 6 45 1.7E-8 T 12-10-2018 IPR018691 Protein of unknown function DUF2188 AMJ96_CH02097 0baf0dcbb48d581f7a8a1a89decea6f5 338 Gene3D G3DSA:3.40.190.10 37 327 3.8E-48 T 12-10-2018 AMJ96_CH02097 0baf0dcbb48d581f7a8a1a89decea6f5 338 Gene3D G3DSA:3.40.190.10 113 212 3.8E-48 T 12-10-2018 AMJ96_CH02097 0baf0dcbb48d581f7a8a1a89decea6f5 338 SUPERFAMILY SSF53850 30 258 8.07E-24 T 12-10-2018 AMJ96_CH02097 0baf0dcbb48d581f7a8a1a89decea6f5 338 Pfam PF09084 NMT1/THI5 like 42 243 2.7E-28 T 12-10-2018 IPR015168 SsuA/THI5-like AMJ96_CH03482 bb617f411bef76bcf87232af81b6f3d1 326 Pfam PF05621 Bacterial TniB protein 21 292 3.5E-17 T 12-10-2018 IPR008868 Bacterial TniB AMJ96_CH03482 bb617f411bef76bcf87232af81b6f3d1 326 SUPERFAMILY SSF52540 97 304 4.4E-8 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH00981 967d91ea7a25b93171898ae36468a19f 251 Pfam PF02104 SURF1 family 23 231 9.8E-39 T 12-10-2018 IPR002994 Surfeit locus 1/Shy1 GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AMJ96_CH00385 aa9db94ac5bd12dec3d4844aed081ecf 218 Pfam PF10041 Uncharacterized conserved protein (DUF2277) 5 77 3.0E-31 T 12-10-2018 IPR018735 Protein of unknown function DUF2277 AMJ96_PA00163 d1a969967f8c9fe7ead0ea2c5527b67c 372 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 167 363 1.5E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PA00163 d1a969967f8c9fe7ead0ea2c5527b67c 372 Gene3D G3DSA:1.10.3720.10 125 368 7.3E-57 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PA00163 d1a969967f8c9fe7ead0ea2c5527b67c 372 SUPERFAMILY SSF161098 129 351 4.32E-46 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH03736 02a9e268be94f2201140ece15e9e9d8f 91 Pfam PF13747 Domain of unknown function (DUF4164) 6 91 2.6E-33 T 12-10-2018 IPR025310 Protein of unknown function DUF4164 AMJ96_PB00346 409ee9a52256908afb7c3de7db355f34 70 Gene3D G3DSA:3.40.50.1980 1 69 8.0E-23 T 12-10-2018 AMJ96_CH01070 711f4f7cfb092e0fc693d74e4aa983b8 298 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 22 142 3.7E-14 T 12-10-2018 IPR002654 Glycosyl transferase, family 25 AMJ96_PA00068 366dbb89d9733b5b7dc271d4ca6f1904 471 Gene3D G3DSA:3.20.20.120 185 419 2.7E-18 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_PA00068 366dbb89d9733b5b7dc271d4ca6f1904 471 SUPERFAMILY SSF51604 213 340 2.4E-9 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily AMJ96_CH02626 3242d1f4eb8beb3ea158c7495334ff2f 115 Gene3D G3DSA:1.25.40.880 5 110 8.3E-33 T 12-10-2018 IPR038536 Alkyl/aryl-sulfatase, dimerisation domain superfamily AMJ96_CH02626 3242d1f4eb8beb3ea158c7495334ff2f 115 SUPERFAMILY SSF56281 7 108 1.7E-23 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like AMJ96_CH02626 3242d1f4eb8beb3ea158c7495334ff2f 115 Pfam PF14863 Alkyl sulfatase dimerisation 11 108 5.0E-31 T 12-10-2018 IPR029228 Alkyl sulfatase dimerisation domain GO:0046983 AMJ96_CH01112 18b60c77fb6a07eb29dc8f899e76b1ac 176 Gene3D G3DSA:1.10.10.690 2 169 5.8E-24 T 12-10-2018 IPR027405 YidB-like AMJ96_CH01112 18b60c77fb6a07eb29dc8f899e76b1ac 176 SUPERFAMILY SSF140804 57 159 1.18E-27 T 12-10-2018 IPR027405 YidB-like AMJ96_CH01112 18b60c77fb6a07eb29dc8f899e76b1ac 176 Pfam PF06078 Bacterial protein of unknown function (DUF937) 32 150 7.6E-12 T 12-10-2018 IPR009282 Protein of unknown function DUF937 AMJ96_PC00239 4c787af60bb3d5c467e503afc8330057 271 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 40 257 1.1E-9 T 12-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase AMJ96_PC00239 4c787af60bb3d5c467e503afc8330057 271 Gene3D G3DSA:3.60.10.10 38 269 4.6E-33 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMJ96_PC00239 4c787af60bb3d5c467e503afc8330057 271 SUPERFAMILY SSF56219 38 267 2.36E-32 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMJ96_CH03290 07d24e8d558461a7ac3c4253978f84fc 379 Pfam PF04012 PspA/IM30 family 168 293 1.6E-15 T 12-10-2018 IPR007157 PspA/IM30 AMJ96_CH01383 f6c1fffd85ba43f2543c062488766e27 76 Pfam PF06568 Domain of unknown function (DUF1127) 32 65 4.5E-9 T 12-10-2018 IPR009506 Protein of unknown function DUF1127 AMJ96_CH00007 d198997a467a206ffc8943cf12c0d694 168 Pfam PF04186 FxsA cytoplasmic membrane protein 9 115 1.3E-29 T 12-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 AMJ96_CH03291 2979d340b047ee19edb057a6709eba04 215 Pfam PF07290 Protein of unknown function (DUF1449) 9 198 4.3E-68 T 12-10-2018 IPR010840 Protein of unknown function DUF1449 AMJ96_CH02886 82359208253bb44f9acd842996ce1031 140 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 23 91 6.0E-5 T 12-10-2018 AMJ96_CH02886 82359208253bb44f9acd842996ce1031 140 Pfam PF13827 Domain of unknown function (DUF4189) 25 104 5.4E-11 T 12-10-2018 IPR025240 Domain of unknown function DUF4189 AMJ96_CH04194 ef9cb64e0c7cb11b1b831d5741556ae3 219 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 4 215 3.9E-86 T 12-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria AMJ96_CH04194 ef9cb64e0c7cb11b1b831d5741556ae3 219 PIRSF PIRSF002764 1 219 3.8E-65 T 12-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria AMJ96_CH04194 ef9cb64e0c7cb11b1b831d5741556ae3 219 Pfam PF03379 CcmB protein 1 215 4.0E-84 T 12-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AMJ96_CH04194 ef9cb64e0c7cb11b1b831d5741556ae3 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 74 97 3.6E-62 T 12-10-2018 AMJ96_CH04194 ef9cb64e0c7cb11b1b831d5741556ae3 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 99 117 3.6E-62 T 12-10-2018 AMJ96_CH04194 ef9cb64e0c7cb11b1b831d5741556ae3 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 154 173 3.6E-62 T 12-10-2018 AMJ96_CH04194 ef9cb64e0c7cb11b1b831d5741556ae3 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 25 46 3.6E-62 T 12-10-2018 AMJ96_CH04194 ef9cb64e0c7cb11b1b831d5741556ae3 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 51 68 3.6E-62 T 12-10-2018 AMJ96_CH04194 ef9cb64e0c7cb11b1b831d5741556ae3 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 192 215 3.6E-62 T 12-10-2018 AMJ96_CH02853 c40014e01a96ce8561486c5a2a71edf3 162 SUPERFAMILY SSF55298 12 160 2.51E-46 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMJ96_CH02853 c40014e01a96ce8561486c5a2a71edf3 162 Gene3D G3DSA:3.30.1330.40 9 160 5.3E-50 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 AMJ96_CH02853 c40014e01a96ce8561486c5a2a71edf3 162 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 13 159 3.1E-26 T 12-10-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AMJ96_CH03374 e4ece4f5f4546ffea7f9f77e7aeb17e5 147 Pfam PF07681 DoxX 30 104 8.4E-13 T 12-10-2018 IPR032808 DoxX family AMJ96_CH00841 b32473e9edda622b60632b7baedf24e2 118 Gene3D G3DSA:1.20.1260.10 58 118 1.2E-21 T 12-10-2018 IPR012347 Ferritin-like AMJ96_CH00841 b32473e9edda622b60632b7baedf24e2 118 Pfam PF03713 Domain of unknown function (DUF305) 28 113 1.5E-21 T 12-10-2018 IPR005183 Domain of unknown function DUF305 AMJ96_CH02291 3d244218284f28fe16b597d71613d116 130 Pfam PF07681 DoxX 15 89 3.7E-14 T 12-10-2018 IPR032808 DoxX family AMJ96_CH02480 9f32e760a297042c3010c70f8804fd5f 726 Pfam PF00691 OmpA family 610 707 3.3E-19 T 12-10-2018 IPR006665 OmpA-like domain AMJ96_CH02480 9f32e760a297042c3010c70f8804fd5f 726 SUPERFAMILY SSF103088 600 713 1.02E-24 T 12-10-2018 IPR036737 OmpA-like domain superfamily AMJ96_CH02480 9f32e760a297042c3010c70f8804fd5f 726 Gene3D G3DSA:3.30.1330.60 582 719 4.4E-27 T 12-10-2018 IPR036737 OmpA-like domain superfamily AMJ96_CH02480 9f32e760a297042c3010c70f8804fd5f 726 PRINTS PR01021 OMPA domain signature 660 676 8.3E-6 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMJ96_CH02480 9f32e760a297042c3010c70f8804fd5f 726 PRINTS PR01021 OMPA domain signature 645 660 8.3E-6 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AMJ96_CH02663 c65543e2b3f8592f1c1e9eb9cdb65d02 498 Pfam PF09823 Domain of unknown function (DUF2357) 148 292 2.0E-7 T 12-10-2018 IPR018633 Domain of unknown function DUF2357 AMJ96_CH00504 437d7d83915aab6bcdc2ec66d0f308cc 302 SUPERFAMILY SSF53850 23 301 3.64E-54 T 12-10-2018 AMJ96_CH00504 437d7d83915aab6bcdc2ec66d0f308cc 302 Gene3D G3DSA:3.40.190.120 126 239 1.4E-90 T 12-10-2018 AMJ96_CH00504 437d7d83915aab6bcdc2ec66d0f308cc 302 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 23 297 1.4E-51 T 12-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 AMJ96_CH00504 437d7d83915aab6bcdc2ec66d0f308cc 302 Gene3D G3DSA:3.40.190.10 25 299 1.4E-90 T 12-10-2018 AMJ96_PC00460 f00556eee6b9c57c8d51be1d90378a01 256 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 5 242 8.8E-67 T 12-10-2018 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 AMJ96_CH01359 1350e8a4e119dd70018f0e5dd9c1249c 499 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 55 216 5.3E-23 T 12-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like AMJ96_PC00027 9cd41cfb00b50918ea7a9b4010eea257 397 Pfam PF01757 Acyltransferase family 8 313 2.3E-31 T 12-10-2018 IPR002656 Acyltransferase 3 GO:0016747 AMJ96_CH04342 113c03bba0351ce284b031eb85cf95ce 68 Pfam PF08410 Domain of unknown function (DUF1737) 1 52 1.2E-28 T 12-10-2018 IPR013619 Domain of unknown function DUF1737 AMJ96_CH02281 d395582c50641a625637240960077b6b 114 Pfam PF04191 Phospholipid methyltransferase 8 94 3.9E-6 T 12-10-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 AMJ96_CH02281 d395582c50641a625637240960077b6b 114 Gene3D G3DSA:1.20.120.1630 1 113 2.4E-10 T 12-10-2018 AMJ96_CH03949 493a083e2a3248260dc76055d9334cdc 316 Pfam PF02653 Branched-chain amino acid transport system / permease component 38 302 4.0E-45 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH04059 54834a9ecd6bda258a1d8c0a0313bc1b 259 Pfam PF11306 Protein of unknown function (DUF3108) 16 255 3.4E-32 T 12-10-2018 IPR021457 Protein of unknown function DUF3108 AMJ96_CH01871 1bcf2bfe124e4c896adfd9f9ca12601b 270 Pfam PF02616 Segregation and condensation protein ScpA 36 252 1.9E-11 T 12-10-2018 IPR003768 Segregation and condensation protein A AMJ96_CH02484 1331921cfdb1b9b1d5fa744f4b8834c4 88 Pfam PF06233 Usg-like family 8 86 9.6E-42 T 12-10-2018 IPR009354 Usg-like AMJ96_CH00869 a2155f60a06391ec86ea46f87de3db97 76 Pfam PF09866 Uncharacterized protein conserved in bacteria (DUF2093) 23 62 3.3E-22 T 12-10-2018 IPR018661 Protein of unknown function DUF2093 AMJ96_CH01049 2aac8c4d9829f03253b95ee905d900be 397 Gene3D G3DSA:1.20.1250.20 1 384 2.0E-64 T 12-10-2018 AMJ96_CH01049 2aac8c4d9829f03253b95ee905d900be 397 ProSitePatterns PS00216 Sugar transport proteins signature 1. 61 77 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AMJ96_CH01049 2aac8c4d9829f03253b95ee905d900be 397 Pfam PF07690 Major Facilitator Superfamily 8 350 2.3E-46 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AMJ96_CH01049 2aac8c4d9829f03253b95ee905d900be 397 PRINTS PR01035 Tetracycline resistance protein signature 299 319 2.1E-94 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH01049 2aac8c4d9829f03253b95ee905d900be 397 PRINTS PR01035 Tetracycline resistance protein signature 334 357 2.1E-94 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH01049 2aac8c4d9829f03253b95ee905d900be 397 PRINTS PR01035 Tetracycline resistance protein signature 274 295 2.1E-94 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH01049 2aac8c4d9829f03253b95ee905d900be 397 PRINTS PR01035 Tetracycline resistance protein signature 364 383 2.1E-94 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH01049 2aac8c4d9829f03253b95ee905d900be 397 PRINTS PR01035 Tetracycline resistance protein signature 43 62 2.1E-94 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH01049 2aac8c4d9829f03253b95ee905d900be 397 PRINTS PR01035 Tetracycline resistance protein signature 14 30 2.1E-94 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH01049 2aac8c4d9829f03253b95ee905d900be 397 PRINTS PR01035 Tetracycline resistance protein signature 217 234 2.1E-94 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH01049 2aac8c4d9829f03253b95ee905d900be 397 PRINTS PR01035 Tetracycline resistance protein signature 246 266 2.1E-94 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH01049 2aac8c4d9829f03253b95ee905d900be 397 PRINTS PR01035 Tetracycline resistance protein signature 131 153 2.1E-94 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH01049 2aac8c4d9829f03253b95ee905d900be 397 PRINTS PR01035 Tetracycline resistance protein signature 159 179 2.1E-94 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH01049 2aac8c4d9829f03253b95ee905d900be 397 PRINTS PR01035 Tetracycline resistance protein signature 74 98 2.1E-94 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH01049 2aac8c4d9829f03253b95ee905d900be 397 PRINTS PR01035 Tetracycline resistance protein signature 101 122 2.1E-94 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AMJ96_CH01049 2aac8c4d9829f03253b95ee905d900be 397 SUPERFAMILY SSF103473 3 388 1.27E-57 T 12-10-2018 IPR036259 MFS transporter superfamily AMJ96_PB00216 6c0376b0ad0e2f519135c5d9f0da3420 337 SUPERFAMILY SSF53335 104 226 1.08E-5 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH03791 aedf83c67fb88b2e21da57ac2dfadc2a 87 Hamap MF_00797 UPF0335 protein . 3 80 22.59 T 12-10-2018 IPR018753 Azospirillum phage Cd, Gp10 AMJ96_CH03791 aedf83c67fb88b2e21da57ac2dfadc2a 87 Pfam PF10073 Uncharacterized protein conserved in bacteria (DUF2312) 8 79 2.2E-35 T 12-10-2018 IPR018753 Azospirillum phage Cd, Gp10 AMJ96_CH03087 50f9be4c255baf9b6d2e14cf4a2bf920 79 Pfam PF11154 Protein of unknown function (DUF2934) 5 40 2.1E-13 T 12-10-2018 IPR021327 Protein of unknown function DUF2934 AMJ96_CH00144 cabcf820a9f8975640c820b737f0d948 157 Pfam PF00583 Acetyltransferase (GNAT) family 50 132 2.2E-10 T 12-10-2018 IPR000182 GNAT domain AMJ96_CH00144 cabcf820a9f8975640c820b737f0d948 157 SUPERFAMILY SSF55729 9 153 1.86E-22 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase AMJ96_CH00144 cabcf820a9f8975640c820b737f0d948 157 Gene3D G3DSA:3.40.630.30 2 155 5.2E-21 T 12-10-2018 AMJ96_PB00327 2198a5ad00693f39734d1d0b4f15e943 116 Pfam PF05717 IS66 Orf2 like protein 9 107 7.6E-35 T 12-10-2018 IPR008878 Transposase IS66, Orf2 AMJ96_CH03224 485db01eb3b45816aacf0e70be02e362 399 Pfam PF03594 Benzoate membrane transport protein 4 384 7.4E-105 T 12-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 AMJ96_CH03224 485db01eb3b45816aacf0e70be02e362 399 TIGRFAM TIGR00843 benE: benzoate transporter 7 382 2.2E-75 T 12-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 AMJ96_PD00340 0cd11114c131084cd76d2166800705b5 319 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 13 289 1.5E-11 T 12-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD AMJ96_PB00046 fad6430e5aaebb99f6de793278e2c210 215 SMART SM00749 7 68 11.0 T 12-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria AMJ96_PB00046 fad6430e5aaebb99f6de793278e2c210 215 SMART SM00749 153 215 0.0011 T 12-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria AMJ96_PB00046 fad6430e5aaebb99f6de793278e2c210 215 Gene3D G3DSA:3.40.1520.20 102 209 3.2E-5 T 12-10-2018 AMJ96_PB00046 fad6430e5aaebb99f6de793278e2c210 215 Pfam PF04972 BON domain 2 69 1.1E-16 T 12-10-2018 IPR007055 BON domain AMJ96_PB00046 fad6430e5aaebb99f6de793278e2c210 215 Pfam PF04972 BON domain 151 214 7.5E-13 T 12-10-2018 IPR007055 BON domain AMJ96_PB00046 fad6430e5aaebb99f6de793278e2c210 215 Pfam PF04972 BON domain 77 145 1.4E-15 T 12-10-2018 IPR007055 BON domain AMJ96_CH02640 247f56f04b410d7048f000127a180e0c 335 Pfam PF14281 PD-(D/E)XK nuclease superfamily 35 169 1.1E-4 T 12-10-2018 IPR029470 PD-(D/E)XK nuclease superfamily 4 AMJ96_CH03320 9b3a36278c4f5621f119166609dae8db 403 Pfam PF02653 Branched-chain amino acid transport system / permease component 55 393 3.8E-47 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_PD00157 f0408b34f130287e82391ebec015dcbb 175 Pfam PF13628 Domain of unknown function (DUF4142) 37 173 1.3E-44 T 12-10-2018 IPR025419 Domain of unknown function DUF4142 AMJ96_CH01564 efe22d471a34e4b67a1cfd04a8803184 183 Pfam PF02620 Uncharacterized ACR, COG1399 65 178 9.2E-13 T 12-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD AMJ96_CH03540 990bc945a5a3075f59f97e54bf817952 463 Pfam PF11862 Domain of unknown function (DUF3382) 20 117 2.1E-16 T 12-10-2018 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal AMJ96_CH03540 990bc945a5a3075f59f97e54bf817952 463 Pfam PF02653 Branched-chain amino acid transport system / permease component 136 430 1.4E-48 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03824 9101489d3a39ca6dee8c8b1d6d5e4b40 237 SUPERFAMILY SSF50199 135 227 4.97E-6 T 12-10-2018 AMJ96_CH01189 a772549ddaf742ffd683940128466a8a 266 Pfam PF06182 ABC-2 family transporter protein 40 265 3.0E-15 T 12-10-2018 IPR010390 Protein of unknown function DUF990 AMJ96_CH03984 d64e3d49ebf3fce52505b996200dd1f4 376 Pfam PF01699 Sodium/calcium exchanger protein 234 373 2.7E-12 T 12-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 AMJ96_CH03984 d64e3d49ebf3fce52505b996200dd1f4 376 Pfam PF01699 Sodium/calcium exchanger protein 48 201 1.0E-18 T 12-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 AMJ96_CH03769 ca5a075f623bf8b50f5244dfc7f806f7 580 Gene3D G3DSA:1.10.287.950 281 496 2.6E-6 T 12-10-2018 AMJ96_CH03769 ca5a075f623bf8b50f5244dfc7f806f7 580 SUPERFAMILY SSF58104 283 508 1.31E-7 T 12-10-2018 AMJ96_PC00175 46c4012f3cbff225a8c59d37b1ce8ccd 187 Pfam PF01478 Type IV leader peptidase family 17 117 4.5E-13 T 12-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 AMJ96_PC00175 46c4012f3cbff225a8c59d37b1ce8ccd 187 Gene3D G3DSA:1.20.120.1220 11 146 3.0E-8 T 12-10-2018 AMJ96_CH00324 59bcbe62eb71b729cbed209f07e0464b 48 Gene3D G3DSA:3.40.50.1010 15 46 5.1E-10 T 12-10-2018 AMJ96_PB00265 64d511f07a3ae1755c953ce4c6371687 119 SUPERFAMILY SSF51735 20 116 5.96E-5 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily AMJ96_PA00244 9a143cf9c7ebee822aaf7274f85bcf62 332 Pfam PF02653 Branched-chain amino acid transport system / permease component 43 313 1.9E-48 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH04271 fc5f689a528458f5644e88e433efb938 51 Pfam PF11752 Protein of unknown function (DUF3309) 3 51 1.6E-24 T 12-10-2018 IPR021738 Protein of unknown function DUF3309 AMJ96_CH02248 08a006c0d85203803e7867799b97611f 379 Pfam PF13449 Esterase-like activity of phytase 62 360 1.8E-84 T 12-10-2018 IPR027372 Phytase-like domain AMJ96_CH02055 64a1baecb3bb221368ad31b4abc3a798 320 Pfam PF03547 Membrane transport protein 164 306 2.5E-17 T 12-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AMJ96_CH02055 64a1baecb3bb221368ad31b4abc3a798 320 Pfam PF03547 Membrane transport protein 5 112 9.6E-9 T 12-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 AMJ96_CH03334 632c2cb5670bfc2117846c0aa70360ca 351 Pfam PF14130 Domain of unknown function (DUF4297) 13 217 7.4E-33 T 12-10-2018 IPR025382 Domain of unknown function DUF4297 AMJ96_CH04297 2757b3ab00f8f30cecefea1bb9582124 320 Pfam PF08893 Domain of unknown function (DUF1839) 10 317 1.6E-140 T 12-10-2018 IPR014989 Protein of unknown function DUF1839 AMJ96_PD00292 8b5186facdcb565ca7b0fd7081c45230 130 Pfam PF13430 Domain of unknown function (DUF4112) 18 118 4.4E-30 T 12-10-2018 IPR025187 Protein of unknown function DUF4112 AMJ96_PB00176 319279beb224f1b038573226f5b95f9f 328 Pfam PF02653 Branched-chain amino acid transport system / permease component 55 317 1.7E-33 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH02118 2714301b9ccfdc9d97a17c00bcc4fe21 342 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 338 9.4E-45 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_CH02118 2714301b9ccfdc9d97a17c00bcc4fe21 342 SUPERFAMILY SSF161098 93 325 2.88E-22 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_CH00791 021ee8a8f96cf0301ee483bf8b394d07 291 Pfam PF01061 ABC-2 type transporter 39 252 7.3E-22 T 12-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 AMJ96_CH01315 8444dfc14729de8b2a79fa71a5ebc52b 122 Pfam PF06170 Protein of unknown function (DUF983) 28 112 1.4E-31 T 12-10-2018 IPR009325 Protein of unknown function DUF983 AMJ96_CH01975 383e9d9cbb703ac1e4a1a388a6b8a028 278 Pfam PF08904 Domain of unknown function (DUF1849) 28 271 1.2E-91 T 12-10-2018 IPR015000 Protein of unknown function DUF1849 AMJ96_CH00104 f9105b79e0748406a20dc2cb3907a03a 240 Pfam PF06912 Protein of unknown function (DUF1275) 23 212 1.7E-30 T 12-10-2018 IPR010699 Protein of unknown function DUF1275 AMJ96_CH02345 851457225a465fd30fed099dc18b5f81 84 Pfam PF06568 Domain of unknown function (DUF1127) 38 73 2.2E-10 T 12-10-2018 IPR009506 Protein of unknown function DUF1127 AMJ96_PD00615 419abc8a122dc8b579c91cda0fbb5cd5 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 303 1.2E-36 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 AMJ96_PD00615 419abc8a122dc8b579c91cda0fbb5cd5 305 SUPERFAMILY SSF161098 93 290 2.29E-17 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PD00615 419abc8a122dc8b579c91cda0fbb5cd5 305 Gene3D G3DSA:1.10.3720.10 84 298 1.4E-19 T 12-10-2018 IPR035906 MetI-like superfamily AMJ96_PC00058 d0cfde5c6361cf747c49a73399349a54 299 Pfam PF06271 RDD family 27 173 5.7E-23 T 12-10-2018 IPR010432 RDD AMJ96_CH03174 ee39c140b8c0c6f92479ad59a96bc826 166 Pfam PF10722 Putative bacterial sensory transduction regulator 14 143 7.6E-28 T 12-10-2018 IPR019660 Putative sensory transduction regulator YbjN AMJ96_PB00107 f3779c317fad289187645c3c6251b5b5 304 SUPERFAMILY SSF51126 119 297 2.09E-52 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor AMJ96_PB00107 f3779c317fad289187645c3c6251b5b5 304 Gene3D G3DSA:2.160.20.10 106 302 3.8E-60 T 12-10-2018 IPR012334 Pectin lyase fold AMJ96_PB00107 f3779c317fad289187645c3c6251b5b5 304 Pfam PF03211 Pectate lyase 116 284 2.7E-46 T 12-10-2018 IPR004898 Pectate lyase PlyH/PlyE-like GO:0005576|GO:0030570 KEGG: 00040+4.2.2.2 AMJ96_CH01155 4da15995c05a27633d885dc8ef98c4f2 126 Pfam PF04138 GtrA-like protein 3 116 1.1E-13 T 12-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 AMJ96_CH02685 2a7a324cc5df402bf2c0d4bb50a69241 341 SUPERFAMILY SSF52540 61 305 3.8E-11 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH02685 2a7a324cc5df402bf2c0d4bb50a69241 341 Pfam PF13401 AAA domain 49 202 4.8E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain AMJ96_PB00167 0cc7e41f561103c8e383b6de5916e52d 132 SUPERFAMILY SSF51316 1 130 7.01E-35 T 12-10-2018 IPR011057 Mss4-like superfamily AMJ96_PB00167 0cc7e41f561103c8e383b6de5916e52d 132 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 25 113 1.3E-17 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AMJ96_PB00167 0cc7e41f561103c8e383b6de5916e52d 132 Gene3D G3DSA:2.170.150.70 3 115 1.4E-16 T 12-10-2018 AMJ96_PC00417 f18a5142e12e6c1c5f530b33e0114120 48 Pfam PF06568 Domain of unknown function (DUF1127) 3 39 3.1E-16 T 12-10-2018 IPR009506 Protein of unknown function DUF1127 AMJ96_CH04321 bce6ebd26628209130904083e94a7d57 300 Gene3D G3DSA:3.60.10.10 1 288 7.0E-50 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMJ96_CH04321 bce6ebd26628209130904083e94a7d57 300 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 279 1.4E-10 T 12-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase AMJ96_CH04321 bce6ebd26628209130904083e94a7d57 300 SUPERFAMILY SSF56219 2 286 1.57E-36 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily AMJ96_CH00888 4c13c0bf2b83b809e1a0a78e151e68a0 163 Pfam PF00430 ATP synthase B/B' CF(0) 12 138 2.7E-22 T 12-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AMJ96_CH00888 4c13c0bf2b83b809e1a0a78e151e68a0 163 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 140 11.914 T 12-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AMJ96_CH04061 ed7a93d07f733f12efb0730fbbe8d35a 211 Pfam PF02592 Putative vitamin uptake transporter 83 195 5.7E-18 T 12-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 AMJ96_CH04061 ed7a93d07f733f12efb0730fbbe8d35a 211 Pfam PF02592 Putative vitamin uptake transporter 43 86 2.8E-9 T 12-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 AMJ96_CH04061 ed7a93d07f733f12efb0730fbbe8d35a 211 Hamap MF_02088 Probable queuosine precursor transporter. 1 209 14.803 T 12-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 AMJ96_CH00073 07b511d1e21e855eee9e4377ca81105e 172 Pfam PF06191 Protein of unknown function (DUF995) 16 151 1.4E-55 T 12-10-2018 IPR009337 Protein of unknown function DUF995 AMJ96_CH01641 4905135685bf3d58d897cb5b50ab8ead 233 Gene3D G3DSA:1.10.150.20 163 226 5.7E-5 T 12-10-2018 AMJ96_CH04175 66413d7d2aa0754c0e2ec07f3fbcb5a7 292 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 258 1.1E-31 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH00762 9140cfbb0b5df9edef0c9e7b3dfb9597 630 Pfam PF05170 AsmA family 25 200 1.5E-9 T 12-10-2018 IPR007844 AsmA AMJ96_CH00762 9140cfbb0b5df9edef0c9e7b3dfb9597 630 Pfam PF13502 AsmA-like C-terminal region 408 590 8.9E-15 T 12-10-2018 IPR032712 AsmA-like, C-terminal AMJ96_CH04063 2dac6d1c6412d7359f278c6c5f0e6ce1 341 Pfam PF13449 Esterase-like activity of phytase 66 317 4.8E-34 T 12-10-2018 IPR027372 Phytase-like domain AMJ96_CH04063 2dac6d1c6412d7359f278c6c5f0e6ce1 341 PIRSF PIRSF031900 1 332 4.2E-124 T 12-10-2018 IPR014567 Uncharacterised conserved protein UCP031900 AMJ96_CH00420 07c53efcb7c7f2bfb9328cccf1f895fd 221 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 75 208 3.1E-7 T 12-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related AMJ96_CH00564 8177ff014520d76278ae357d1b98a430 210 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 26 197 1.2E-25 T 12-10-2018 IPR003740 Uncharacterised membrane protein YitT AMJ96_CH02070 d2b6204a35a1757744ad2c1e031545e6 259 Pfam PF13643 Domain of unknown function (DUF4145) 134 210 6.1E-15 T 12-10-2018 IPR025285 Domain of unknown function DUF4145 AMJ96_CH04196 2d4d84b5d6b696200c307728d2066129 55 Pfam PF04995 Heme exporter protein D (CcmD) 1 43 5.7E-15 T 12-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 AMJ96_CH04196 2d4d84b5d6b696200c307728d2066129 55 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 1 43 1.7E-10 T 12-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 AMJ96_PC00290 1c993c40ae22e45edc3660f74c555058 295 Pfam PF02653 Branched-chain amino acid transport system / permease component 17 283 1.0E-40 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_PA00226 367f6305208fb09048ca649219a0058b 326 Pfam PF09084 NMT1/THI5 like 43 254 7.4E-21 T 12-10-2018 IPR015168 SsuA/THI5-like AMJ96_PA00226 367f6305208fb09048ca649219a0058b 326 SUPERFAMILY SSF53850 25 281 6.53E-35 T 12-10-2018 AMJ96_PA00226 367f6305208fb09048ca649219a0058b 326 Gene3D G3DSA:3.40.190.10 153 319 7.1E-20 T 12-10-2018 AMJ96_PA00226 367f6305208fb09048ca649219a0058b 326 Gene3D G3DSA:3.40.190.10 23 152 5.5E-10 T 12-10-2018 AMJ96_CH00923 1b81e15f0157e34d55a32d0024b80c06 155 Pfam PF07886 BA14K-like protein 123 152 2.1E-15 T 12-10-2018 IPR012413 BA14k family GO:0009405 AMJ96_CH02439 41ec05ab788d1fc6524d999d099c6595 191 Pfam PF09832 Uncharacterized protein conserved in bacteria (DUF2059) 95 153 1.9E-18 T 12-10-2018 IPR018637 Domain of unknown function DUF2059 AMJ96_CH02336 5b013434ad4163998950a7454fce4f0a 159 Pfam PF04120 Low affinity iron permease 5 129 5.7E-49 T 12-10-2018 IPR007251 Low affinity iron permease, Fet4 GO:0055085 AMJ96_CH02949 4c9dad845b651dd9e65884ea4888dca4 158 Pfam PF10027 Predicted integral membrane protein (DUF2269) 6 153 4.0E-56 T 12-10-2018 IPR018729 Protein of unknown function DUF2269, transmembrane AMJ96_CH01288 c2bc036c4a040510a76a698e8cb1af6e 121 Pfam PF03779 SPW repeat 16 59 8.0E-12 T 12-10-2018 IPR005530 SPW repeat AMJ96_CH01288 c2bc036c4a040510a76a698e8cb1af6e 121 Pfam PF03779 SPW repeat 66 111 8.7E-17 T 12-10-2018 IPR005530 SPW repeat AMJ96_PC00029 3c5607f9d63e4d1d29fcef027867cf34 133 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 26 122 5.1E-33 T 12-10-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 AMJ96_PC00029 3c5607f9d63e4d1d29fcef027867cf34 133 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 34 105 2.4E-15 T 12-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 AMJ96_PC00034 dd3378d40aad4327e614adff7cbbdbc4 177 SUPERFAMILY SSF53474 53 151 4.23E-11 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PC00034 dd3378d40aad4327e614adff7cbbdbc4 177 Gene3D G3DSA:3.40.50.1820 7 169 1.1E-10 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold AMJ96_PD00010 2dbe0d93be45525227c90d7ffc17e735 185 Pfam PF11736 Protein of unknown function (DUF3299) 67 163 2.1E-21 T 12-10-2018 IPR021727 Protein of unknown function DUF3299 AMJ96_PD00010 2dbe0d93be45525227c90d7ffc17e735 185 Gene3D G3DSA:2.40.50.870 27 170 1.0E-24 T 12-10-2018 AMJ96_CH03229 292975a7416ebd05ed7ce2f97153c7ea 226 Pfam PF09929 Putative PD-(D/E)XK phosphodiesterase (DUF2161) 100 209 4.9E-38 T 12-10-2018 IPR018679 Putative PD-(D/E)XK phosphodiesterase (DUF2161) AMJ96_CH01287 99d480364c8763684f93d93e7235a246 169 Gene3D G3DSA:2.60.40.790 22 168 1.0E-37 T 12-10-2018 IPR008978 HSP20-like chaperone AMJ96_CH01287 99d480364c8763684f93d93e7235a246 169 SUPERFAMILY SSF49764 47 167 5.49E-37 T 12-10-2018 IPR008978 HSP20-like chaperone AMJ96_CH01287 99d480364c8763684f93d93e7235a246 169 Pfam PF00011 Hsp20/alpha crystallin family 69 167 5.2E-24 T 12-10-2018 IPR002068 Alpha crystallin/Hsp20 domain AMJ96_CH01878 aeaaae60984b6ff39909157faa8954af 217 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 13 210 1.4E-39 T 12-10-2018 AMJ96_CH01878 aeaaae60984b6ff39909157faa8954af 217 SUPERFAMILY SSF53335 18 212 3.56E-36 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AMJ96_CH01878 aeaaae60984b6ff39909157faa8954af 217 Gene3D G3DSA:3.40.50.150 3 214 1.3E-49 T 12-10-2018 AMJ96_PD00429 9e3d15163effd6f5400a15d1a03a2210 65 Gene3D G3DSA:1.20.1270.360 19 63 3.2E-8 T 12-10-2018 AMJ96_CH03289 e911587b1da6b95eb389f281c7be294b 203 Gene3D G3DSA:1.20.120.1760 7 202 7.6E-21 T 12-10-2018 AMJ96_CH03289 e911587b1da6b95eb389f281c7be294b 203 Pfam PF01066 CDP-alcohol phosphatidyltransferase 27 94 4.3E-7 T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AMJ96_CH02557 f0966163426a33ce8be42e83990c2ba4 1367 TIGRFAM TIGR02257 cobalto_cobN: cobaltochelatase, CobN subunit 276 1360 0.0 T 12-10-2018 IPR011953 Cobaltochelatase, CobN subunit GO:0009236|GO:0051116 AMJ96_CH02557 f0966163426a33ce8be42e83990c2ba4 1367 Pfam PF02514 CobN/Magnesium Chelatase 139 1351 0.0 T 12-10-2018 IPR003672 CobN/magnesium chelatase GO:0009058 AMJ96_PC00444 1dadb6223d986a2f68f17e4de8c8b2c9 247 Pfam PF07812 TfuA-like protein 50 169 7.9E-39 T 12-10-2018 IPR012924 TfuA-like, core AMJ96_PB00028 56b6f7d72693f1c5dc9c05e8e28ae3bc 160 Pfam PF10002 Predicted membrane protein (DUF2243) 16 157 1.3E-52 T 12-10-2018 IPR018719 Protein of unknown function DUF2243, membrane AMJ96_CH00233 dd87d20ec9cb31977dd51bc429d2300b 548 Pfam PF13807 G-rich domain on putative tyrosine kinase 447 519 9.8E-8 T 12-10-2018 IPR032807 Tyrosine kinase, G-rich domain AMJ96_PB00228 db818316758346a2d461788fa19c425f 58 Pfam PF12244 Protein of unknown function (DUF3606) 5 55 2.5E-15 T 12-10-2018 IPR022037 Protein of unknown function DUF3606 AMJ96_CH03084 16f54b25fefd84d6a7b389b8130e66bd 136 Pfam PF13778 Domain of unknown function (DUF4174) 23 133 1.6E-15 T 12-10-2018 IPR025232 Domain of unknown function DUF4174 AMJ96_PC00046 f1305a4eae09d9c0c3f8c8f6b80a800a 391 Pfam PF11294 Protein of unknown function (DUF3095) 9 379 9.7E-140 T 12-10-2018 IPR021445 Protein of unknown function DUF3095 AMJ96_PC00318 92bdc2a98d54c1323c646a715760902d 176 Gene3D G3DSA:1.20.120.1220 2 150 4.0E-6 T 12-10-2018 AMJ96_PC00318 92bdc2a98d54c1323c646a715760902d 176 Pfam PF01478 Type IV leader peptidase family 13 123 3.5E-9 T 12-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 AMJ96_CH03441 880e814a01983f0fcf6769b156559aff 80 Pfam PF13619 KTSC domain 20 76 5.2E-14 T 12-10-2018 IPR025309 KTSC domain AMJ96_CH00731 a10692a5f0091a5e93ac1999a355f5a7 187 Pfam PF10135 Rod binding protein 93 138 4.4E-10 T 12-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal AMJ96_CH00807 358e2c69168169c9fdba56df6d5d990b 323 SUPERFAMILY SSF53448 3 241 1.74E-21 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases AMJ96_CH00051 c95efb9f5f563a7cc64df23f3d9eea5e 315 Pfam PF07182 Protein of unknown function (DUF1402) 19 315 7.6E-156 T 12-10-2018 IPR009842 Protein of unknown function DUF1402 AMJ96_PD00079 0d420b32788d8f189db4807659a2eb2d 145 Pfam PF07012 Curlin associated repeat 78 111 1.5E-8 T 12-10-2018 IPR009742 Curlin associated GO:0007155|GO:0009289 AMJ96_PD00079 0d420b32788d8f189db4807659a2eb2d 145 Pfam PF07012 Curlin associated repeat 26 56 6.4E-5 T 12-10-2018 IPR009742 Curlin associated GO:0007155|GO:0009289 AMJ96_CH03370 a8903b9ffbb69b3c197a17f7c1ae66b5 733 Pfam PF12728 Helix-turn-helix domain 366 415 1.7E-6 T 12-10-2018 AMJ96_CH03370 a8903b9ffbb69b3c197a17f7c1ae66b5 733 Pfam PF06527 TniQ 65 130 6.6E-10 T 12-10-2018 IPR009492 TniQ AMJ96_CH01482 d11964426325f1a8a5b01fb9d36f1868 211 PIRSF PIRSF006324 3 211 3.4E-67 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMJ96_CH01482 d11964426325f1a8a5b01fb9d36f1868 211 Pfam PF01810 LysE type translocator 18 209 3.0E-32 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMJ96_CH04270 29763f28fc6bf30b5f5b902b4ff12ce8 86 Pfam PF13488 Glycine zipper 24 65 1.6E-8 T 12-10-2018 IPR039567 Glycine zipper domain AMJ96_CH03494 9ca782317a9153f4bd90a056a7e605a5 1140 ProDom PD144061 ECS5259 GENOME STY4851 YJIT 77 311 2.0E-22 T 12-10-2018 AMJ96_CH02749 d5b4e67c1fd76af5a7e0ad23ca16cbee 245 Pfam PF09992 Phosphodiester glycosidase 68 227 1.6E-15 T 12-10-2018 IPR018711 Phosphodiester glycosidase AMJ96_CH03207 08a3bd20e24e14c16cb459560ff162a9 61 Pfam PF06348 Protein of unknown function (DUF1059) 1 56 1.0E-21 T 12-10-2018 IPR009409 Protein of unknown function DUF1059 AMJ96_CH03852 84b40358565e1e2c5356b5b7ee23c6fb 337 Pfam PF04773 FecR protein 55 154 3.9E-12 T 12-10-2018 IPR006860 FecR protein AMJ96_PA00205 a7964c26dd359b75722b64b51812770e 346 Pfam PF02653 Branched-chain amino acid transport system / permease component 62 319 1.9E-31 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH00652 b7b2729e64eb1887e40e67da99b7c39c 316 Pfam PF02653 Branched-chain amino acid transport system / permease component 30 300 3.5E-52 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH01492 ad595f0382bcde7c534f813d8efe9ed1 347 Gene3D G3DSA:3.20.20.100 1 346 3.6E-118 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH01492 ad595f0382bcde7c534f813d8efe9ed1 347 SUPERFAMILY SSF51430 1 345 4.85E-100 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily AMJ96_CH01492 ad595f0382bcde7c534f813d8efe9ed1 347 Pfam PF00248 Aldo/keto reductase family 15 339 1.1E-69 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain AMJ96_CH00945 7ac49a025985544cb44b596ab5b4b8e8 68 Gene3D G3DSA:1.10.10.10 20 68 2.3E-12 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily AMJ96_CH00945 7ac49a025985544cb44b596ab5b4b8e8 68 SMART SM00421 13 66 3.2E-4 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00945 7ac49a025985544cb44b596ab5b4b8e8 68 Pfam PF00196 Bacterial regulatory proteins, luxR family 23 65 6.6E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AMJ96_CH00945 7ac49a025985544cb44b596ab5b4b8e8 68 SUPERFAMILY SSF46894 22 67 4.42E-12 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AMJ96_CH03266 b34844f49a1b614c5650048f6ab7262c 329 SUPERFAMILY SSF88713 21 320 2.78E-24 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AMJ96_CH03266 b34844f49a1b614c5650048f6ab7262c 329 Gene3D G3DSA:3.20.20.370 47 325 4.6E-23 T 12-10-2018 AMJ96_CH01967 0ff52ae60561779bfa777bb9372e841a 67 Pfam PF11324 Protein of unknown function (DUF3126) 5 66 2.0E-30 T 12-10-2018 IPR021473 Protein of unknown function DUF3126 AMJ96_CH02779 ca6f1896e3706c5767088022afafd109 307 Pfam PF03690 Uncharacterised protein family (UPF0160) 6 298 3.1E-72 T 12-10-2018 IPR003226 Metal-dependent protein hydrolase AMJ96_CH02306 2159040199c4678a5c18b9dba7750be5 101 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 46 96 7.7E-6 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AMJ96_CH02306 2159040199c4678a5c18b9dba7750be5 101 Pfam PF00460 Flagella basal body rod protein 8 36 1.3E-5 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AMJ96_CH02835 4981ffe0f1569579d252bb734665a4c7 406 SUPERFAMILY SSF46785 332 385 2.98E-5 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily AMJ96_CH01262 56fc1b70be8c1fc871ff85a91ac56050 79 Pfam PF06568 Domain of unknown function (DUF1127) 27 56 1.0E-7 T 12-10-2018 IPR009506 Protein of unknown function DUF1127 AMJ96_CH01090 5e7e12f3065fc68aeb5e995cd391770f 509 Pfam PF00916 Sulfate permease family 8 367 8.3E-57 T 12-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 AMJ96_CH03894 33bece6df9905fc686e895776213d20b 133 Pfam PF07681 DoxX 13 87 6.5E-9 T 12-10-2018 IPR032808 DoxX family AMJ96_PC00204 b9b3091ed9173be3cce747ada0e49f8f 356 Pfam PF01757 Acyltransferase family 13 333 2.6E-13 T 12-10-2018 IPR002656 Acyltransferase 3 GO:0016747 AMJ96_CH01547 49629cf7e49a84080d467e806769ed9f 152 Pfam PF06271 RDD family 22 144 2.3E-16 T 12-10-2018 IPR010432 RDD AMJ96_CH00249 084489984b55eed6bb3268f06d9a8b24 96 Pfam PF06169 Protein of unknown function (DUF982) 16 79 1.0E-18 T 12-10-2018 IPR010385 Protein of unknown function DUF982 AMJ96_PC00174 45d70f40ee9828e7c1ae09aa675a1ebb 265 Pfam PF07811 TadE-like protein 73 112 2.2E-5 T 12-10-2018 IPR012495 TadE-like AMJ96_CH03331 9eae1ca6b70a6e0113ae28eb318a436e 437 Pfam PF02653 Branched-chain amino acid transport system / permease component 63 426 1.1E-35 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH01519 0694f1fad9722545513766f1367af857 298 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 288 7.5E-24 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_PB00259 a00d42504aaf0c0b4d8e08e01784d20d 80 Pfam PF13289 SIR2-like domain 13 66 1.2E-6 T 12-10-2018 IPR039444 SIR2-like domain AMJ96_CH04230 6f59aaad62e8b9817afad1acbd34c40b 79 Pfam PF11154 Protein of unknown function (DUF2934) 5 39 2.9E-13 T 12-10-2018 IPR021327 Protein of unknown function DUF2934 AMJ96_CH03682 d476177c7159430eaf4f8696928ee1b8 287 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 274 1.2E-31 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH01926 a9c1b367c407d78a340470c353296631 132 Pfam PF05071 NADH ubiquinone oxidoreductase subunit NDUFA12 27 130 1.2E-26 T 12-10-2018 IPR007763 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 GO:0008137|GO:0009055|GO:0016020 Reactome: R-HSA-6799198 AMJ96_CH03383 e1647b6c65dce3565869257808b76d67 645 Pfam PF01757 Acyltransferase family 4 319 2.6E-24 T 12-10-2018 IPR002656 Acyltransferase 3 GO:0016747 AMJ96_PB00344 8bc0099c3390f70c56a5cb54aa789179 236 Pfam PF04891 NifQ 58 214 1.8E-50 T 12-10-2018 IPR006975 NifQ GO:0009399|GO:0030151 AMJ96_CH03733 1aaee410ff757678590cfee052522992 490 Pfam PF13449 Esterase-like activity of phytase 56 454 1.3E-37 T 12-10-2018 IPR027372 Phytase-like domain AMJ96_CH03417 375f95b8331bb9fdb3e4e8b9fedea551 300 Pfam PF04230 Polysaccharide pyruvyl transferase 37 185 2.4E-7 T 12-10-2018 IPR007345 Polysaccharide pyruvyl transferase AMJ96_CH00800 1d8df3ea887d130263ec233ee401dc7e 233 Pfam PF08889 WbqC-like protein family 9 226 3.8E-63 T 12-10-2018 IPR014985 WbqC-like protein family AMJ96_CH03489 fabafde6c506a4f1d8fa5b5737cfe716 573 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 407 479 7.0E-15 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AMJ96_CH03489 fabafde6c506a4f1d8fa5b5737cfe716 573 SUPERFAMILY SSF52540 218 500 5.78E-16 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AMJ96_CH01857 2dc8fbd559c9d6e52f7832831e91e755 320 Pfam PF04116 Fatty acid hydroxylase superfamily 118 252 2.0E-31 T 12-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 AMJ96_CH02810 0b3bc93a60ac20f7c4b1622d810eaf01 186 SUPERFAMILY SSF55874 66 148 3.87E-5 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily AMJ96_CH00924 a8eb38c7c5f29115c105d4831c976442 87 Pfam PF06169 Protein of unknown function (DUF982) 10 81 4.7E-23 T 12-10-2018 IPR010385 Protein of unknown function DUF982 AMJ96_PB00139 e37ab3aa2dee021ce3b9c49edc7df666 87 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 7 81 2.3E-10 T 12-10-2018 IPR000477 Reverse transcriptase domain AMJ96_PB00139 e37ab3aa2dee021ce3b9c49edc7df666 87 SUPERFAMILY SSF56672 7 83 3.74E-13 T 12-10-2018 AMJ96_CH03919 1fadc11ff24dea3a1f6207a6c7760bf4 147 Pfam PF07681 DoxX 15 93 5.3E-11 T 12-10-2018 IPR032808 DoxX family AMJ96_PD00338 4ad5ec4600f146547c77673fb0b34e24 415 Pfam PF05559 Protein of unknown function (DUF763) 6 337 6.1E-128 T 12-10-2018 IPR008482 Protein of unknown function DUF763 AMJ96_PB00194 058086b52f78eee154e44e30af8d2d92 310 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 39 252 4.4E-52 T 12-10-2018 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 AMJ96_CH02580 cf00585b4b98bf4c872be17f66ec0dea 215 Pfam PF01914 MarC family integral membrane protein 14 204 1.5E-22 T 12-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AMJ96_CH00486 fba7d0fa092b5c540740ceb7675af5ad 354 Pfam PF02653 Branched-chain amino acid transport system / permease component 71 343 1.5E-47 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH02147 07e46ec48b6e2566fb78061e506aa14c 322 Pfam PF02653 Branched-chain amino acid transport system / permease component 35 304 8.5E-41 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH00251 1d06605244a25f41545533c7621f187f 135 Pfam PF07886 BA14K-like protein 102 131 3.7E-13 T 12-10-2018 IPR012413 BA14k family GO:0009405 AMJ96_CH02577 3089bd2218913936b1279bbb6c6a65bf 607 Gene3D G3DSA:1.25.40.10 318 596 2.8E-19 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_CH02577 3089bd2218913936b1279bbb6c6a65bf 607 SUPERFAMILY SSF48452 362 556 2.16E-18 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 AMJ96_PD00567 39cf50a858511662aad11060b2675d67 316 Pfam PF02653 Branched-chain amino acid transport system / permease component 42 299 5.3E-33 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH00966 28748f322e88a7c50b34893cc0fd1428 337 Pfam PF01384 Phosphate transporter family 24 323 7.3E-94 T 12-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 AMJ96_CH04168 fa233e8b9e71c46db51ed6431089faec 213 Pfam PF01810 LysE type translocator 15 200 7.1E-17 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMJ96_CH01361 162fefd8b2a3d00fc5e4ea9b203dc2f2 497 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 55 216 8.1E-19 T 12-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like AMJ96_CH03930 ffe091e86d6b83de2c229358a84240aa 237 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 10 214 4.7E-24 T 12-10-2018 AMJ96_PC00206 4489bce74da61b9ac4ee40e4627ccb6e 504 Pfam PF13440 Polysaccharide biosynthesis protein 48 335 4.0E-62 T 12-10-2018 AMJ96_PC00206 4489bce74da61b9ac4ee40e4627ccb6e 504 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 339 475 1.9E-8 T 12-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain AMJ96_CH02081 cec972333e40b04ff39c63c2c10b61fb 93 Pfam PF06169 Protein of unknown function (DUF982) 7 76 8.3E-17 T 12-10-2018 IPR010385 Protein of unknown function DUF982 AMJ96_PD00503 e9944d8f7f8961b355245ef8acfcb422 115 Pfam PF04343 Protein of unknown function, DUF488 5 111 9.4E-33 T 12-10-2018 IPR007438 Protein of unknown function DUF488 AMJ96_CH00688 0f735a7c19ef90d8b83188382244a3a4 146 PIRSF PIRSF034217 1 144 2.9E-72 T 12-10-2018 IPR017024 Uncharacterised conserved protein UCP034217 AMJ96_CH03465 9124a962960665430ff3b885aa3d4bae 135 Pfam PF10087 Uncharacterized protein conserved in bacteria (DUF2325) 36 127 1.3E-23 T 12-10-2018 IPR016772 Uncharacterised conserved protein UCP020408 AMJ96_CH01219 d2cbe11492be79495a3ed4c5f125db29 155 Pfam PF07617 Protein of unknown function (DUF1579) 8 153 1.7E-50 T 12-10-2018 IPR011473 Protein of unknown function DUF1579 AMJ96_CH00302 0e0a2133862707990217617697ad7b48 133 Pfam PF11512 Agrobacterium tumefaciens protein Atu4866 57 132 3.9E-40 T 12-10-2018 IPR020955 Uncharacterised protein family Atu4866 AMJ96_CH00302 0e0a2133862707990217617697ad7b48 133 Gene3D G3DSA:2.40.128.290 56 133 2.6E-40 T 12-10-2018 IPR038646 Atu4866-like superfamily AMJ96_PB00188 03ee9230374e350811e63064c5b4d0ae 219 Pfam PF01464 Transglycosylase SLT domain 8 111 2.0E-7 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 AMJ96_PD00682 a2a2ee5ae05ff8431cfd0ebba95c608f 214 Pfam PF01464 Transglycosylase SLT domain 8 110 1.7E-6 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 AMJ96_PA00297 ee4ca446ed68df935b3bdaf8cecf9886 419 Pfam PF02653 Branched-chain amino acid transport system / permease component 72 403 1.5E-33 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH02146 128701c0c48c79521bcf7b538b5accf4 334 Pfam PF02653 Branched-chain amino acid transport system / permease component 47 312 1.6E-39 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_CH03830 fb303a06941b2139538a3834f18ea583 163 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 20 154 2.6E-20 T 12-10-2018 IPR009936 Protein of unknown function DUF1468 AMJ96_PD00681 34124d9c8ed7b52a850651f7c99c625d 99 Pfam PF04956 TrbC/VIRB2 family 6 96 6.9E-25 T 12-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 AMJ96_CH03954 d90ff9b587351caf8a3350e50c7da7bb 131 Pfam PF07681 DoxX 7 88 1.4E-6 T 12-10-2018 IPR032808 DoxX family AMJ96_CH01891 58bc8cac882cf5f22ccbf28ce361c165 49 Pfam PF06568 Domain of unknown function (DUF1127) 7 41 1.5E-13 T 12-10-2018 IPR009506 Protein of unknown function DUF1127 AMJ96_PA00232 4c892c0e53a12be6ab68775e8ca81930 320 Pfam PF02653 Branched-chain amino acid transport system / permease component 55 306 2.1E-37 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 AMJ96_PB00375 61040de746064fdf0fb6e1a8ab0ca515 50 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 2 50 2.9E-19 T 12-10-2018 IPR008621 Cbb3-type cytochrome oxidase component AMJ96_CH03419 f7bbe7a05f49e358a3f21ef99bdcea24 343 Pfam PF04230 Polysaccharide pyruvyl transferase 41 293 1.7E-27 T 12-10-2018 IPR007345 Polysaccharide pyruvyl transferase AMJ96_CH02229 dfc01fc99f4028587754d8240a2ea6de 84 Pfam PF04226 Transglycosylase associated protein 36 84 2.6E-14 T 12-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 AMJ96_CH01480 4b98022e087ac6f6b75c10b965b710e5 205 Pfam PF02674 Colicin V production protein 6 148 1.6E-29 T 12-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 AMJ96_PC00147 39be86e9ea602eb66a4a463665b0ab1b 103 Pfam PF06169 Protein of unknown function (DUF982) 10 81 1.8E-23 T 12-10-2018 IPR010385 Protein of unknown function DUF982 AMJ96_CH01896 ae1fbf3852d227129351abea9d08378a 196 Pfam PF14345 GDYXXLXY protein 25 183 4.0E-39 T 12-10-2018 IPR025833 GDYXXLXY protein AMJ96_PD00122 50544923e488a99a105fe3f457a6ac9d 128 Pfam PF11154 Protein of unknown function (DUF2934) 46 81 5.0E-15 T 12-10-2018 IPR021327 Protein of unknown function DUF2934 AMJ96_CH04006 b5a9e8a9f5c99a8693c655949a649b53 55 Pfam PF04964 Flp/Fap pilin component 7 51 7.2E-14 T 12-10-2018 IPR007047 Flp/Fap pilin component AMJ96_CH00445 7a98a71657b5191aa28dc66abaf99488 312 Pfam PF00487 Fatty acid desaturase 47 251 5.2E-7 T 12-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 AMJ96_CH04081 0d027bfb917d11c9b8ab80f17f32b447 171 Pfam PF11157 Protein of unknown function (DUF2937) 4 164 7.6E-48 T 12-10-2018 IPR022584 Protein of unknown function DUF2937 AMJ96_PC00384 9f279135a3d61526f7730af1974cb2e5 146 Pfam PF04657 Putative inner membrane exporter, YdcZ 3 134 2.9E-22 T 12-10-2018 IPR006750 Putative inner membrane exporter, YdcZ AMJ96_CH03772 51426f20e0cb8f8b0bb51cc4df423365 254 Pfam PF01925 Sulfite exporter TauE/SafE 13 245 1.7E-29 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMJ96_CH02168 86aea702a3a22e9c3dc4f15afc8ff4c8 215 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 7 202 9.7E-53 T 12-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AMJ96_CH02168 86aea702a3a22e9c3dc4f15afc8ff4c8 215 Pfam PF01914 MarC family integral membrane protein 6 206 2.0E-55 T 12-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AMJ96_PC00205 bfd8435b3e0378c70ce9db15abe1ff81 362 Pfam PF04230 Polysaccharide pyruvyl transferase 79 294 1.5E-18 T 12-10-2018 IPR007345 Polysaccharide pyruvyl transferase AMJ96_CH03995 a550790b6e0ef328cd247fb677f45bfc 242 Pfam PF13763 Domain of unknown function (DUF4167) 24 98 1.8E-30 T 12-10-2018 IPR025430 Domain of unknown function DUF4167 AMJ96_CH01928 7430a18725aa1f35c993ef087b96fbbc 308 Pfam PF09935 Protein of unknown function (DUF2167) 45 290 6.1E-88 T 12-10-2018 IPR018682 Protein of unknown function DUF2167, membrane AMJ96_PD00668 7cecaec8c7c1f0d561a26ee6484341c3 392 Pfam PF06666 Protein of unknown function (DUF1173) 2 383 6.3E-155 T 12-10-2018 IPR009553 Protein of unknown function DUF1173 AMJ96_CH03860 94e1634ac7c5c5d8d38363be4c5eec20 132 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 45 129 5.3E-34 T 12-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AMJ96_PB00204 10c7d815e92e6bb0cdade16e1d10c906 88 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 14 48 1.2E-5 T 12-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM AMJ96_CH01362 7c873814014201ff0b32d9f4ccfc2d4b 320 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 25 290 1.2E-14 T 12-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD AMJ96_PD00413 8499a5454b708087a11eaafaf6074561 282 SUPERFAMILY SSF49785 135 260 5.46E-6 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily AMJ96_CH01598 1fed51266aaa8472707bd06703604dae 263 Pfam PF01925 Sulfite exporter TauE/SafE 27 252 1.1E-19 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMJ96_PA00130 65f17267428d2ecec5dfc866423eb5ca 50 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 2 50 7.6E-22 T 12-10-2018 IPR008621 Cbb3-type cytochrome oxidase component AMJ96_CH02773 1bd4c72eef82eab6db02ef16d5747c7e 121 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 30 99 1.0E-11 T 12-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 AMJ96_CH00230 fef1d84dd75e3daa19ec68a60762183b 338 Pfam PF01757 Acyltransferase family 4 318 2.2E-26 T 12-10-2018 IPR002656 Acyltransferase 3 GO:0016747 AMJ96_CH04129 9ab77e024e1749e09a7d6ee33ef86aab 358 Pfam PF01963 TraB family 85 355 4.2E-69 T 12-10-2018 IPR002816 Pheromone shutdown, TraB AMJ96_CH03829 bc4bdaf4d15af9362c28d815355d508d 505 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 438 2.3E-142 T 12-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane AMJ96_CH00217 7b9f818cb56f4705a6cde14e7e90cbcc 210 Pfam PF01810 LysE type translocator 16 205 1.2E-35 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AMJ96_CH03381 c1f6c80a94e3b4d274a9b0009a033c71 85 Pfam PF04752 ChaC-like protein 6 77 3.1E-11 T 12-10-2018 IPR006840 Glutathione-specific gamma-glutamylcyclotransferase GO:0003839|GO:0006751 KEGG: 00480+4.3.2.7|MetaCyc: PWY-7942|Reactome: R-HSA-174403 AMJ96_CH02687 eee807da128e09c9d745e5550e52cbd6 103 Pfam PF01527 Transposase 18 71 7.4E-10 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 AMJ96_CH02379 387723e603ad7710a326342c2e6e56d4 679 Pfam PF13515 Fusaric acid resistance protein-like 371 495 3.5E-17 T 12-10-2018 AMJ96_PD00187 b3b8fff66ffd0a3fc1c636b4f8c83b85 297 Pfam PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) 45 282 1.6E-53 T 12-10-2018 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related AMJ96_CH02555 40519cd97fc88d9b349dead546db54c0 261 Pfam PF01925 Sulfite exporter TauE/SafE 13 247 1.0E-44 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AMJ96_CH02705 57ed7b1733775e7fd85ae12756787caa 503 Pfam PF08811 Protein of unknown function (DUF1800) 9 502 2.4E-122 T 12-10-2018 IPR014917 Protein of unknown function DUF1800 AMJ96_CH03353 175add750e8bd6ef8b375429397da19a 261 Pfam PF06114 IrrE N-terminal-like domain 58 158 2.1E-12 T 12-10-2018 IPR010359 IrrE N-terminal-like domain AMJ96_CH04094 bd3808b1bd5be0a3a7e1ed65e442e93b 85 Pfam PF13441 YMGG-like Gly-zipper 20 61 2.4E-9 T 12-10-2018 IPR027367 YMGG-like Gly-zipper AMJ96_CH02761 a1b4ca36eab4ad3d41c7671233315e07 140 TIGRFAM TIGR02594 TIGR02594: TIGR02594 family protein 43 139 9.0E-22 T 12-10-2018 IPR013423 Conserved hypothetical protein CHP02594 AMJ96_CH03388 53a7a5e17dfcd0ae7e83a2932fbf719f 89 Pfam PF04972 BON domain 24 82 1.4E-7 T 12-10-2018 IPR007055 BON domain AMJ96_CH03827 97dbdf1962b2125cce981118ab7d1204 362 Pfam PF04332 Protein of unknown function (DUF475) 61 348 6.6E-106 T 12-10-2018 IPR007427 Protein of unknown function DUF475 AMJ96_CH01272 0bc940b515a659b447a681180604923c 388 Pfam PF01594 AI-2E family transporter 56 376 4.9E-33 T 12-10-2018 IPR002549 Transmembrane protein TqsA-like AMJ96_CH01159 daf85ea3707da046a255c198f5c80bd4 563 Pfam PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase 91 247 1.6E-4 T 12-10-2018 IPR003342 Glycosyl transferase family 39/83 GO:0000030|GO:0006493|GO:0016020 Reactome: R-HSA-5173105