locus-tag class description A3858_00055 PF16867 Dimethlysulfonioproprionate lyase A3858_00060 PF00107 Zinc-binding dehydrogenase A3858_00060 PF08240 Alcohol dehydrogenase GroES-like domain A3858_00065 PF00440 Bacterial regulatory proteins, tetR family A3858_00065 PF16925 Tetracyclin repressor-like, C-terminal domain A3858_00070 PF00005 ABC transporter A3858_00075 PF00005 ABC transporter A3858_00080 PF01032 FecCD transport family A3858_00085 PF01497 Periplasmic binding protein A3858_00090 PF00593 TonB dependent receptor A3858_00090 PF07715 TonB-dependent Receptor Plug Domain A3858_00095 PF00480 ROK family A3858_00105 PF00528 Binding-protein-dependent transport system inner membrane component A3858_00110 PF00528 Binding-protein-dependent transport system inner membrane component A3858_00115 PF17912 MalK OB fold domain A3858_00115 PF00005 ABC transporter A3858_00120 PF01869 BadF/BadG/BcrA/BcrD ATPase family A3858_00130 PF01212 Beta-eliminating lyase A3858_00135 PF00455 DeoR C terminal sensor domain A3858_00135 PF08220 DeoR-like helix-turn-helix domain A3858_00140 PF00459 Inositol monophosphatase family A3858_00150 PF00528 Binding-protein-dependent transport system inner membrane component A3858_00155 PF12911 N-terminal TM domain of oligopeptide transport permease C A3858_00155 PF00528 Binding-protein-dependent transport system inner membrane component A3858_00160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A3858_00160 PF00005 ABC transporter A3858_00165 PF01546 Peptidase family M20/M25/M40 A3858_00205 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) A3858_00210 PF02606 Tetraacyldisaccharide-1-P 4'-kinase A3858_00215 PF02515 CoA-transferase family III A3858_00230 PF14815 NUDIX domain A3858_00230 PF00730 HhH-GPD superfamily base excision DNA repair protein A3858_00230 PF10576 Iron-sulfur binding domain of endonuclease III A3858_00230 PF00633 Helix-hairpin-helix motif A3858_00235 PF00487 Fatty acid desaturase A3858_00240 PF18755 Restriction Enzyme Adenine Methylase Associated A3858_00240 PF01555 DNA methylase A3858_00245 PF01351 Ribonuclease HII A3858_00270 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain A3858_00275 PF16653 Saccharopine dehydrogenase C-terminal domain A3858_00275 PF03435 Saccharopine dehydrogenase NADP binding domain A3858_00280 PF00403 Heavy-metal-associated domain A3858_00290 PF00005 ABC transporter A3858_00290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A3858_00295 PF12911 N-terminal TM domain of oligopeptide transport permease C A3858_00295 PF00528 Binding-protein-dependent transport system inner membrane component A3858_00300 PF00528 Binding-protein-dependent transport system inner membrane component A3858_00305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A3858_00320 PF00270 DEAD/DEAH box helicase A3858_00320 PF00271 Helicase conserved C-terminal domain A3858_00325 PF00440 Bacterial regulatory proteins, tetR family A3858_00330 PF07237 Protein of unknown function (DUF1428) A3858_00340 PF00085 Thioredoxin A3858_00350 PF03966 Trm112p-like protein A3858_00355 PF01494 FAD binding domain A3858_00360 PF01425 Amidase A3858_00365 PF00155 Aminotransferase class I and II A3858_00370 PF13491 4TM region of DNA translocase FtsK/SpoIIIE A3858_00370 PF17854 FtsK alpha domain A3858_00370 PF09397 Ftsk gamma domain A3858_00370 PF01580 FtsK/SpoIIIE family A3858_00420 PF00849 RNA pseudouridylate synthase A3858_00430 PF00171 Aldehyde dehydrogenase family A3858_00455 PF00814 Glycoprotease family A3858_00460 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus A3858_00460 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus A3858_00475 PF00291 Pyridoxal-phosphate dependent enzyme A3858_00480 PF05221 S-adenosyl-L-homocysteine hydrolase A3858_00480 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain A3858_00485 PF01501 Glycosyl transferase family 8 A3858_00485 PF08759 Glycosyltransferase GT-D fold A3858_00490 PF01966 HD domain A3858_00495 PF00816 H-NS histone family A3858_00500 PF00072 Response regulator receiver domain A3858_00505 PF02630 SCO1/SenC A3858_00510 PF00512 His Kinase A (phospho-acceptor) domain A3858_00510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_00515 PF00512 His Kinase A (phospho-acceptor) domain A3858_00515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_00520 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE A3858_00525 PF01636 Phosphotransferase enzyme family A3858_00530 PF12804 MobA-like NTP transferase domain A3858_00535 PF12705 PD-(D/E)XK nuclease superfamily A3858_00540 PF00580 UvrD/REP helicase N-terminal domain A3858_00540 PF12705 PD-(D/E)XK nuclease superfamily A3858_00540 PF13361 UvrD-like helicase C-terminal domain A3858_00545 PF00085 Thioredoxin A3858_00555 PF00227 Proteasome subunit A3858_00560 PF07724 AAA domain (Cdc48 subfamily) A3858_00560 PF07728 AAA domain (dynein-related subfamily) A3858_00565 PF03062 MBOAT, membrane-bound O-acyltransferase family A3858_00595 PF00483 Nucleotidyl transferase A3858_00600 PF00535 Glycosyl transferase family 2 A3858_00615 PF00005 ABC transporter A3858_00635 PF00210 Ferritin-like domain A3858_00650 PF04391 Protein of unknown function (DUF533) A3858_00655 PF01614 Bacterial transcriptional regulator A3858_00655 PF09339 IclR helix-turn-helix domain A3858_00665 PF04115 Ureidoglycolate lyase A3858_00670 PF07883 Cupin domain A3858_00670 PF05899 Protein of unknown function (DUF861) A3858_00680 PF00576 HIUase/Transthyretin family A3858_00685 PF00556 Antenna complex alpha/beta subunit A3858_00690 PF00556 Antenna complex alpha/beta subunit A3858_00695 PF00180 Isocitrate/isopropylmalate dehydrogenase A3858_00700 PF08546 Ketopantoate reductase PanE/ApbA C terminal A3858_00700 PF02558 Ketopantoate reductase PanE/ApbA A3858_00705 PF13193 AMP-binding enzyme C-terminal domain A3858_00705 PF00501 AMP-binding enzyme A3858_00710 PF01557 Fumarylacetoacetate (FAA) hydrolase family A3858_00715 PF00296 Luciferase-like monooxygenase A3858_00720 PF01594 AI-2E family transporter A3858_00735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_00735 PF17149 Periplasmic sensor domain found in signal transduction proteins A3858_00735 PF00512 His Kinase A (phospho-acceptor) domain A3858_00735 PF00672 HAMP domain A3858_00735 PF01627 Hpt domain A3858_00735 PF00072 Response regulator receiver domain A3858_00740 PF00120 Glutamine synthetase, catalytic domain A3858_00745 PF00202 Aminotransferase class-III A3858_00750 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain A3858_00750 PF02222 ATP-grasp domain A3858_00755 PF00731 AIR carboxylase A3858_00765 PF00011 Hsp20/alpha crystallin family A3858_00775 PF01292 Prokaryotic cytochrome b561 A3858_00780 PF01747 ATP-sulfurylase A3858_00780 PF14306 PUA-like domain A3858_00785 PF07992 Pyridine nucleotide-disulphide oxidoreductase A3858_00790 PF01037 Lrp/AsnC ligand binding domain A3858_00805 PF01790 Prolipoprotein diacylglyceryl transferase A3858_00820 PF00072 Response regulator receiver domain A3858_00825 PF01627 Hpt domain A3858_00825 PF02895 Signal transducing histidine kinase, homodimeric domain A3858_00825 PF09078 CheY binding A3858_00825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_00825 PF01584 CheW-like domain A3858_00830 PF01584 CheW-like domain A3858_00835 PF01584 CheW-like domain A3858_00840 PF01739 CheR methyltransferase, SAM binding domain A3858_00840 PF03705 CheR methyltransferase, all-alpha domain A3858_00845 PF00072 Response regulator receiver domain A3858_00845 PF01339 CheB methylesterase A3858_00855 PF13409 Glutathione S-transferase, N-terminal domain A3858_00860 PF00072 Response regulator receiver domain A3858_00860 PF00158 Sigma-54 interaction domain A3858_00860 PF02954 Bacterial regulatory protein, Fis family A3858_00870 PF00501 AMP-binding enzyme A3858_00870 PF13193 AMP-binding enzyme C-terminal domain A3858_00870 PF16177 Acetyl-coenzyme A synthetase N-terminus A3858_00875 PF03949 Malic enzyme, NAD binding domain A3858_00875 PF01515 Phosphate acetyl/butaryl transferase A3858_00875 PF00390 Malic enzyme, N-terminal domain A3858_00880 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region A3858_00885 PF02885 Glycosyl transferase family, helical bundle domain A3858_00885 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain A3858_00885 PF00591 Glycosyl transferase family, a/b domain A3858_00890 PF01676 Metalloenzyme superfamily A3858_00895 PF00962 Adenosine/AMP deaminase A3858_00915 PF13193 AMP-binding enzyme C-terminal domain A3858_00915 PF00501 AMP-binding enzyme A3858_00925 PF08241 Methyltransferase domain A3858_00930 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component A3858_00940 PF03480 Bacterial extracellular solute-binding protein, family 7 A3858_00945 PF07729 FCD domain A3858_00945 PF00392 Bacterial regulatory proteins, gntR family A3858_00950 PF00392 Bacterial regulatory proteins, gntR family A3858_00950 PF07729 FCD domain A3858_00955 PF08240 Alcohol dehydrogenase GroES-like domain A3858_00955 PF00107 Zinc-binding dehydrogenase A3858_00960 PF01232 Mannitol dehydrogenase Rossmann domain A3858_00960 PF08125 Mannitol dehydrogenase C-terminal domain A3858_00965 PF08666 SAF domain A3858_00965 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus A3858_00970 PF00512 His Kinase A (phospho-acceptor) domain A3858_00970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_00975 PF00158 Sigma-54 interaction domain A3858_00975 PF02954 Bacterial regulatory protein, Fis family A3858_00975 PF00072 Response regulator receiver domain A3858_00980 PF16868 NMT1-like family A3858_01035 PF13581 Histidine kinase-like ATPase domain A3858_01035 PF13426 PAS domain A3858_01035 PF07536 HWE histidine kinase A3858_01040 PF00196 Bacterial regulatory proteins, luxR family A3858_01040 PF00072 Response regulator receiver domain A3858_01120 PF01925 Sulfite exporter TauE/SafE A3858_01190 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) A3858_01215 PF00356 Bacterial regulatory proteins, lacI family A3858_01215 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family A3858_01230 PF02401 LytB protein A3858_01240 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) A3858_01245 PF01192 RNA polymerase Rpb6 A3858_01250 PF02824 TGS domain A3858_01250 PF04607 Region found in RelA / SpoT proteins A3858_01250 PF13291 ACT domain A3858_01260 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ A3858_01265 PF01648 4'-phosphopantetheinyl transferase superfamily A3858_01270 PF10502 Signal peptidase, peptidase S26 A3858_01275 PF00035 Double-stranded RNA binding motif A3858_01275 PF14622 Ribonuclease-III-like A3858_01280 PF01926 50S ribosome-binding GTPase A3858_01280 PF07650 KH domain A3858_01290 PF11967 Recombination protein O N terminal A3858_01290 PF02565 Recombination protein O C terminal A3858_01295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A3858_01295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A3858_01295 PF02770 Acyl-CoA dehydrogenase, middle domain A3858_01300 PF01293 Phosphoenolpyruvate carboxykinase A3858_01305 PF00486 Transcriptional regulatory protein, C terminal A3858_01305 PF00072 Response regulator receiver domain A3858_01310 PF00512 His Kinase A (phospho-acceptor) domain A3858_01310 PF13755 Sensor N-terminal transmembrane domain A3858_01310 PF00672 HAMP domain A3858_01310 PF13756 Stimulus-sensing domain A3858_01310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_01320 PF03668 P-loop ATPase protein family A3858_01330 PF00381 PTS HPr component phosphorylation site A3858_01335 PF01757 Acyltransferase family A3858_01340 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain A3858_01340 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain A3858_01350 PF00766 Electron transfer flavoprotein FAD-binding domain A3858_01350 PF01012 Electron transfer flavoprotein domain A3858_01355 PF01012 Electron transfer flavoprotein domain A3858_01360 PF01923 Cobalamin adenosyltransferase A3858_01370 PF00106 short chain dehydrogenase A3858_01380 PF00521 DNA gyrase/topoisomerase IV, subunit A A3858_01380 PF03989 DNA gyrase C-terminal domain, beta-propeller A3858_01390 PF03144 Elongation factor Tu domain 2 A3858_01390 PF03143 Elongation factor Tu C-terminal domain A3858_01390 PF00009 Elongation factor Tu GTP binding domain A3858_01410 PF00467 KOW motif A3858_01410 PF02357 Transcription termination factor nusG A3858_01415 PF00298 Ribosomal protein L11, RNA binding domain A3858_01415 PF03946 Ribosomal protein L11, N-terminal domain A3858_01420 PF00687 Ribosomal protein L1p/L10e family A3858_01425 PF00466 Ribosomal protein L10 A3858_01430 PF16320 Ribosomal protein L7/L12 dimerisation domain A3858_01430 PF00542 Ribosomal protein L7/L12 C-terminal domain A3858_01435 PF00562 RNA polymerase Rpb2, domain 6 A3858_01435 PF04560 RNA polymerase Rpb2, domain 7 A3858_01435 PF10385 RNA polymerase beta subunit external 1 domain A3858_01435 PF04563 RNA polymerase beta subunit A3858_01435 PF04561 RNA polymerase Rpb2, domain 2 A3858_01435 PF04565 RNA polymerase Rpb2, domain 3 A3858_01440 PF00623 RNA polymerase Rpb1, domain 2 A3858_01440 PF04997 RNA polymerase Rpb1, domain 1 A3858_01440 PF04998 RNA polymerase Rpb1, domain 5 A3858_01440 PF05000 RNA polymerase Rpb1, domain 4 A3858_01440 PF04983 RNA polymerase Rpb1, domain 3 A3858_01445 PF00892 EamA-like transporter family A3858_01450 PF00164 Ribosomal protein S12/S23 A3858_01455 PF00177 Ribosomal protein S7p/S5e A3858_01460 PF03764 Elongation factor G, domain IV A3858_01460 PF00009 Elongation factor Tu GTP binding domain A3858_01460 PF03144 Elongation factor Tu domain 2 A3858_01460 PF14492 Elongation Factor G, domain II A3858_01460 PF00679 Elongation factor G C-terminus A3858_01465 PF00009 Elongation factor Tu GTP binding domain A3858_01465 PF03144 Elongation factor Tu domain 2 A3858_01465 PF03143 Elongation factor Tu C-terminal domain A3858_01470 PF00338 Ribosomal protein S10p/S20e A3858_01475 PF00297 Ribosomal protein L3 A3858_01480 PF00573 Ribosomal protein L4/L1 family A3858_01485 PF00276 Ribosomal protein L23 A3858_01490 PF00181 Ribosomal Proteins L2, RNA binding domain A3858_01490 PF03947 Ribosomal Proteins L2, C-terminal domain A3858_01495 PF00203 Ribosomal protein S19 A3858_01500 PF00237 Ribosomal protein L22p/L17e A3858_01505 PF00189 Ribosomal protein S3, C-terminal domain A3858_01505 PF07650 KH domain A3858_01510 PF00252 Ribosomal protein L16p/L10e A3858_01515 PF00831 Ribosomal L29 protein A3858_01520 PF00366 Ribosomal protein S17 A3858_01525 PF00238 Ribosomal protein L14p/L23e A3858_01530 PF00467 KOW motif A3858_01530 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 A3858_01535 PF00281 Ribosomal protein L5 A3858_01535 PF00673 ribosomal L5P family C-terminus A3858_01540 PF00253 Ribosomal protein S14p/S29e A3858_01545 PF00410 Ribosomal protein S8 A3858_01550 PF00347 Ribosomal protein L6 A3858_01555 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast A3858_01560 PF03719 Ribosomal protein S5, C-terminal domain A3858_01560 PF00333 Ribosomal protein S5, N-terminal domain A3858_01565 PF00327 Ribosomal protein L30p/L7e A3858_01570 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A A3858_01575 PF00344 SecY translocase A3858_01580 PF05191 Adenylate kinase, active site lid A3858_01585 PF00416 Ribosomal protein S13/S18 A3858_01590 PF00411 Ribosomal protein S11 A3858_01595 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain A3858_01595 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain A3858_01595 PF01000 RNA polymerase Rpb3/RpoA insert domain A3858_01600 PF01196 Ribosomal protein L17 A3858_01610 PF00595 PDZ domain A3858_01615 PF00004 ATPase family associated with various cellular activities (AAA) A3858_01615 PF16193 AAA C-terminal domain A3858_01615 PF12002 MgsA AAA+ ATPase C terminal A3858_01620 PF02537 CrcB-like protein, Camphor Resistance (CrcB) A3858_01625 PF00849 RNA pseudouridylate synthase A3858_01635 PF00497 Bacterial extracellular solute-binding proteins, family 3 A3858_01640 PF00528 Binding-protein-dependent transport system inner membrane component A3858_01645 PF00528 Binding-protein-dependent transport system inner membrane component A3858_01650 PF00005 ABC transporter A3858_01655 PF00111 2Fe-2S iron-sulfur cluster binding domain A3858_01660 PF01321 Creatinase/Prolidase N-terminal domain A3858_01660 PF00557 Metallopeptidase family M24 A3858_01680 PF02548 Ketopantoate hydroxymethyltransferase A3858_01685 PF02569 Pantoate-beta-alanine ligase A3858_01690 PF07687 Peptidase dimerisation domain A3858_01690 PF01546 Peptidase family M20/M25/M40 A3858_01700 PF07509 Protein of unknown function (DUF1523) A3858_01705 PF03483 B3/4 domain A3858_01705 PF01588 Putative tRNA binding domain A3858_01705 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain A3858_01705 PF03147 Ferredoxin-fold anticodon binding domain A3858_01705 PF03484 tRNA synthetase B5 domain A3858_01720 PF01409 tRNA synthetases class II core domain (F) A3858_01720 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain A3858_01725 PF00453 Ribosomal protein L20 A3858_01730 PF01632 Ribosomal protein L35 A3858_01735 PF02887 Pyruvate kinase, alpha/beta domain A3858_01735 PF00224 Pyruvate kinase, barrel domain A3858_01745 PF01063 Amino-transferase class IV A3858_01750 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain A3858_01750 PF13378 Enolase C-terminal domain-like A3858_01760 PF03328 HpcH/HpaI aldolase/citrate lyase family A3858_01770 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit A3858_01775 PF00893 Small Multidrug Resistance protein A3858_01780 PF07995 Glucose / Sorbosone dehydrogenase A3858_01790 PF01272 Transcription elongation factor, GreA/GreB, C-term A3858_01790 PF03449 Transcription elongation factor, N-terminal A3858_01805 PF08544 GHMP kinases C terminal A3858_01805 PF00288 GHMP kinases N terminal domain A3858_01815 PF07995 Glucose / Sorbosone dehydrogenase A3858_01840 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 A3858_01840 PF00381 PTS HPr component phosphorylation site A3858_01840 PF05524 PEP-utilising enzyme, N-terminal A3858_01840 PF02896 PEP-utilising enzyme, TIM barrel domain A3858_01840 PF00391 PEP-utilising enzyme, mobile domain A3858_01845 PF00294 pfkB family carbohydrate kinase A3858_01850 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit A3858_01855 PF02694 Uncharacterised BCR, YnfA/UPF0060 family A3858_01860 PF13411 MerR HTH family regulatory protein A3858_01865 PF00403 Heavy-metal-associated domain A3858_01870 PF00436 Single-strand binding protein family A3858_01875 PF01464 Transglycosylase SLT domain A3858_01880 PF02403 Seryl-tRNA synthetase N-terminal domain A3858_01880 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A3858_01885 PF00080 Copper/zinc superoxide dismutase (SODC) A3858_01890 PF02699 Preprotein translocase subunit A3858_01895 PF02355 Protein export membrane protein A3858_01900 PF07549 SecD/SecF GG Motif A3858_01900 PF02355 Protein export membrane protein A3858_01905 PF04430 Protein of unknown function (DUF498/DUF598) A3858_01910 PF00005 ABC transporter A3858_01915 PF03379 CcmB protein A3858_01920 PF01578 Cytochrome C assembly protein A3858_01925 PF04995 Heme exporter protein D (CcmD) A3858_01930 PF08534 Redoxin A3858_01935 PF00694 Aconitase C-terminal domain A3858_01935 PF00330 Aconitase family (aconitate hydratase) A3858_01950 PF00579 tRNA synthetases class I (W and Y) A3858_01960 PF03023 Lipid II flippase MurJ A3858_01965 PF01966 HD domain A3858_01965 PF08335 GlnD PII-uridylyltransferase A3858_01975 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A3858_01980 PF02021 Uncharacterised protein family UPF0102 A3858_01985 PF02951 Prokaryotic glutathione synthetase, N-terminal domain A3858_01985 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain A3858_01990 PF01078 Magnesium chelatase, subunit ChlI A3858_01990 PF13335 Magnesium chelatase, subunit ChlI C-terminal A3858_02000 PF07670 Nucleoside recognition A3858_02000 PF02421 Ferrous iron transport protein B A3858_02000 PF07664 Ferrous iron transport protein B C terminus A3858_02000 PF17910 FeoB cytosolic helical domain A3858_02005 PF04023 FeoA domain A3858_02015 PF05974 Domain of unknown function (DUF892) A3858_02020 PF00384 Molybdopterin oxidoreductase A3858_02025 PF02540 NAD synthase A3858_02030 PF00994 Probable molybdopterin binding domain A3858_02035 PF08240 Alcohol dehydrogenase GroES-like domain A3858_02035 PF00107 Zinc-binding dehydrogenase A3858_02040 PF01523 Putative modulator of DNA gyrase A3858_02045 PF00116 Cytochrome C oxidase subunit II, periplasmic domain A3858_02045 PF02790 Cytochrome C oxidase subunit II, transmembrane domain A3858_02050 PF01040 UbiA prenyltransferase family A3858_02055 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 A3858_02060 PF00510 Cytochrome c oxidase subunit III A3858_02070 PF00291 Pyridoxal-phosphate dependent enzyme A3858_02070 PF14821 Threonine synthase N terminus A3858_02075 PF00675 Insulinase (Peptidase family M16) A3858_02075 PF05193 Peptidase M16 inactive domain A3858_02095 PF00156 Phosphoribosyl transferase domain A3858_02100 PF01048 Phosphorylase superfamily A3858_02105 PF01613 Flavin reductase like domain A3858_02120 PF04279 Intracellular septation protein A A3858_02130 PF00448 SRP54-type protein, GTPase domain A3858_02130 PF02881 SRP54-type protein, helical bundle domain A3858_02140 PF13742 OB-fold nucleic acid binding domain A3858_02140 PF02601 Exonuclease VII, large subunit A3858_02150 PF02844 Phosphoribosylglycinamide synthetase, N domain A3858_02150 PF02843 Phosphoribosylglycinamide synthetase, C domain A3858_02150 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain A3858_02155 PF02887 Pyruvate kinase, alpha/beta domain A3858_02155 PF00224 Pyruvate kinase, barrel domain A3858_02160 PF13840 ACT domain A3858_02160 PF01842 ACT domain A3858_02160 PF00696 Amino acid kinase family A3858_02165 PF05524 PEP-utilising enzyme, N-terminal A3858_02165 PF02896 PEP-utilising enzyme, TIM barrel domain A3858_02165 PF00391 PEP-utilising enzyme, mobile domain A3858_02170 PF01053 Cys/Met metabolism PLP-dependent enzyme A3858_02175 PF02649 Type I GTP cyclohydrolase folE2 A3858_02180 PF02386 Cation transport protein A3858_02185 PF02386 Cation transport protein A3858_02195 PF02091 Glycyl-tRNA synthetase alpha subunit A3858_02205 PF02092 Glycyl-tRNA synthetase beta subunit A3858_02205 PF05746 DALR anticodon binding domain A3858_02210 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain A3858_02210 PF00391 PEP-utilising enzyme, mobile domain A3858_02210 PF02896 PEP-utilising enzyme, TIM barrel domain A3858_02220 PF02152 Dihydroneopterin aldolase A3858_02225 PF00809 Pterin binding enzyme A3858_02230 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain A3858_02230 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III A3858_02230 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II A3858_02230 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I A3858_02240 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain A3858_02240 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain A3858_02245 PF01037 Lrp/AsnC ligand binding domain A3858_02250 PF13404 AsnC-type helix-turn-helix domain A3858_02250 PF01037 Lrp/AsnC ligand binding domain A3858_02260 PF01494 FAD binding domain A3858_02275 PF00392 Bacterial regulatory proteins, gntR family A3858_02275 PF07729 FCD domain A3858_02290 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain A3858_02290 PF00117 Glutamine amidotransferase class-I A3858_02305 PF00115 Cytochrome C and Quinol oxidase polypeptide I A3858_02310 PF03099 Biotin/lipoate A/B protein ligase family A3858_02325 PF00005 ABC transporter A3858_02325 PF08402 TOBE domain A3858_02335 PF00528 Binding-protein-dependent transport system inner membrane component A3858_02340 PF00528 Binding-protein-dependent transport system inner membrane component A3858_02345 PF00471 Ribosomal protein L33 A3858_02355 PF01027 Inhibitor of apoptosis-promoting Bax1 A3858_02365 PF03466 LysR substrate binding domain A3858_02365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_02370 PF00698 Acyl transferase domain A3858_02370 PF08659 KR domain A3858_02370 PF16197 Ketoacyl-synthetase C-terminal extension A3858_02370 PF00550 Phosphopantetheine attachment site A3858_02370 PF00109 Beta-ketoacyl synthase, N-terminal domain A3858_02370 PF00107 Zinc-binding dehydrogenase A3858_02370 PF14765 Polyketide synthase dehydratase A3858_02370 PF08240 Alcohol dehydrogenase GroES-like domain A3858_02370 PF02801 Beta-ketoacyl synthase, C-terminal domain A3858_02375 PF01381 Helix-turn-helix A3858_02380 PF00459 Inositol monophosphatase family A3858_02385 PF07486 Cell Wall Hydrolase A3858_02390 PF00924 Mechanosensitive ion channel A3858_02395 PF01979 Amidohydrolase family A3858_02400 PF01769 Divalent cation transporter A3858_02400 PF00571 CBS domain A3858_02400 PF03448 MgtE intracellular N domain A3858_02405 PF01812 5-formyltetrahydrofolate cyclo-ligase family A3858_02440 PF00437 Type II/IV secretion system protein A3858_02450 PF05736 OprF membrane domain A3858_02450 PF00691 OmpA family A3858_02455 PF00263 Bacterial type II and III secretion system protein A3858_02455 PF13629 Pilus formation protein N terminal region A3858_02455 PF04972 BON domain A3858_02475 PF01464 Transglycosylase SLT domain A3858_02485 PF01144 Coenzyme A transferase A3858_02490 PF01144 Coenzyme A transferase A3858_02500 PF03466 LysR substrate binding domain A3858_02500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_02510 PF01323 DSBA-like thioredoxin domain A3858_02530 PF08543 Phosphomethylpyrimidine kinase A3858_02535 PF03475 3-alpha domain A3858_02535 PF03473 MOSC domain A3858_02545 PF00392 Bacterial regulatory proteins, gntR family A3858_02545 PF00155 Aminotransferase class I and II A3858_02550 PF04055 Radical SAM superfamily A3858_02550 PF06968 Biotin and Thiamin Synthesis associated domain A3858_02555 PF02632 BioY family A3858_02565 PF01207 Dihydrouridine synthase (Dus) A3858_02570 PF01925 Sulfite exporter TauE/SafE A3858_02575 PF03796 DnaB-like helicase C terminal domain A3858_02575 PF00772 DnaB-like helicase N terminal domain A3858_02580 PF00156 Phosphoribosyl transferase domain A3858_02585 PF01979 Amidohydrolase family A3858_02610 PF02625 XdhC and CoxI family A3858_02610 PF13478 XdhC Rossmann domain A3858_02620 PF00707 Translation initiation factor IF-3, C-terminal domain A3858_02620 PF05198 Translation initiation factor IF-3, N-terminal domain A3858_02630 PF00970 Oxidoreductase FAD-binding domain A3858_02630 PF00175 Oxidoreductase NAD-binding domain A3858_02640 PF01507 Phosphoadenosine phosphosulfate reductase family A3858_02645 PF01077 Nitrite and sulphite reductase 4Fe-4S domain A3858_02645 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain A3858_02655 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A3858_02655 PF10414 Sirohaem synthase dimerisation region A3858_02655 PF14824 Sirohaem biosynthesis protein central A3858_02660 PF01037 Lrp/AsnC ligand binding domain A3858_02665 PF00067 Cytochrome P450 A3858_02670 PF00121 Triosephosphate isomerase A3858_02675 PF01521 Iron-sulphur cluster biosynthesis A3858_02680 PF01883 Iron-sulfur cluster assembly protein A3858_02695 PF00313 'Cold-shock' DNA-binding domain A3858_02700 PF00027 Cyclic nucleotide-binding domain A3858_02700 PF13545 Crp-like helix-turn-helix domain A3858_02725 PF05717 IS66 Orf2 like protein A3858_02765 PF00586 AIR synthase related protein, N-terminal domain A3858_02765 PF02769 AIR synthase related protein, C-terminal domain A3858_02770 PF00551 Formyl transferase A3858_02775 PF00570 HRDC domain A3858_02775 PF01612 3'-5' exonuclease A3858_02785 PF02657 Fe-S metabolism associated domain A3858_02795 PF01321 Creatinase/Prolidase N-terminal domain A3858_02795 PF00557 Metallopeptidase family M24 A3858_02800 PF06213 Cobalamin biosynthesis protein CobT A3858_02800 PF11775 Cobalamin biosynthesis protein CobT VWA domain A3858_02815 PF07728 AAA domain (dynein-related subfamily) A3858_02815 PF08406 CbbQ/NirQ/NorQ C-terminal A3858_02815 PF12556 Cobaltochelatase CobS subunit N terminal A3858_02820 PF00684 DnaJ central domain A3858_02820 PF01556 DnaJ C terminal domain A3858_02820 PF00226 DnaJ domain A3858_02830 PF01274 Malate synthase A3858_02840 PF01433 Peptidase family M1 domain A3858_02840 PF17432 Domain of unknown function (DUF3458_C) ARM repeats A3858_02840 PF11940 Domain of unknown function (DUF3458) Ig-like fold A3858_02845 PF01553 Acyltransferase A3858_02850 PF00155 Aminotransferase class I and II A3858_02860 PF02637 GatB domain A3858_02860 PF02934 GatB/GatE catalytic domain A3858_02875 PF00133 tRNA synthetases class I (I, L, M and V) A3858_02875 PF08264 Anticodon-binding domain of tRNA A3858_02875 PF10458 Valyl tRNA synthetase tRNA binding arm A3858_02885 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain A3858_02885 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain A3858_02900 PF00285 Citrate synthase, C-terminal domain A3858_02905 PF00749 tRNA synthetases class I (E and Q), catalytic domain A3858_02910 PF03772 Competence protein A3858_02910 PF13567 Domain of unknown function (DUF4131) A3858_02910 PF00753 Metallo-beta-lactamase superfamily A3858_02915 PF00717 Peptidase S24-like A3858_02915 PF01726 LexA DNA binding domain A3858_02920 PF03453 MoeA N-terminal region (domain I and II) A3858_02920 PF03454 MoeA C-terminal region (domain IV) A3858_02920 PF00994 Probable molybdopterin binding domain A3858_02925 PF01967 MoaC family A3858_02930 PF00218 Indole-3-glycerol phosphate synthase A3858_02935 PF00591 Glycosyl transferase family, a/b domain A3858_02935 PF02885 Glycosyl transferase family, helical bundle domain A3858_02940 PF00117 Glutamine amidotransferase class-I A3858_02950 PF04715 Anthranilate synthase component I, N terminal region A3858_02950 PF00425 chorismate binding enzyme A3858_02970 PF00202 Aminotransferase class-III A3858_02975 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain A3858_02975 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain A3858_02985 PF01272 Transcription elongation factor, GreA/GreB, C-term A3858_02985 PF03449 Transcription elongation factor, N-terminal A3858_02995 PF08482 ATP-dependent helicase C-terminal A3858_02995 PF00271 Helicase conserved C-terminal domain A3858_02995 PF04408 Helicase associated domain (HA2) A3858_02995 PF00270 DEAD/DEAH box helicase A3858_03010 PF00830 Ribosomal L28 family A3858_03040 PF09086 Domain of unknown function (DUF1924) A3858_03055 PF00313 'Cold-shock' DNA-binding domain A3858_03060 PF14525 AraC-binding-like domain A3858_03060 PF12833 Helix-turn-helix domain A3858_03065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_03065 PF03466 LysR substrate binding domain A3858_03075 PF00106 short chain dehydrogenase A3858_03080 PF13426 PAS domain A3858_03080 PF07536 HWE histidine kinase A3858_03080 PF08447 PAS fold A3858_03255 PF04860 Phage portal protein A3858_03325 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) A3858_03360 PF02151 UvrB/uvrC motif A3858_03360 PF04851 Type III restriction enzyme, res subunit A3858_03360 PF00271 Helicase conserved C-terminal domain A3858_03360 PF17757 UvrB interaction domain A3858_03360 PF12344 Ultra-violet resistance protein B A3858_03390 PF06421 GTP-binding protein LepA C-terminus A3858_03390 PF00009 Elongation factor Tu GTP binding domain A3858_03390 PF00679 Elongation factor G C-terminus A3858_03400 PF02785 Biotin carboxylase C-terminal domain A3858_03400 PF00289 Biotin carboxylase, N-terminal domain A3858_03400 PF00364 Biotin-requiring enzyme A3858_03400 PF00682 HMGL-like A3858_03400 PF02436 Conserved carboxylase domain A3858_03400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A3858_03405 PF00580 UvrD/REP helicase N-terminal domain A3858_03405 PF13361 UvrD-like helicase C-terminal domain A3858_03410 PF03594 Benzoate membrane transport protein A3858_03420 PF10609 NUBPL iron-transfer P-loop NTPase A3858_03425 PF02381 MraZ protein, putative antitoxin-like A3858_03430 PF01795 MraW methylase family A3858_03440 PF00905 Penicillin binding protein transpeptidase domain A3858_03440 PF03717 Penicillin-binding Protein dimerisation domain A3858_03445 PF02875 Mur ligase family, glutamate ligase domain A3858_03445 PF08245 Mur ligase middle domain A3858_03445 PF01225 Mur ligase family, catalytic domain A3858_03450 PF01225 Mur ligase family, catalytic domain A3858_03450 PF02875 Mur ligase family, glutamate ligase domain A3858_03450 PF08245 Mur ligase middle domain A3858_03455 PF00953 Glycosyl transferase family 4 A3858_03455 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 A3858_03465 PF08245 Mur ligase middle domain A3858_03465 PF02875 Mur ligase family, glutamate ligase domain A3858_03480 PF01098 Cell cycle protein A3858_03485 PF03033 Glycosyltransferase family 28 N-terminal domain A3858_03485 PF04101 Glycosyltransferase family 28 C-terminal domain A3858_03490 PF02875 Mur ligase family, glutamate ligase domain A3858_03490 PF01225 Mur ligase family, catalytic domain A3858_03490 PF08245 Mur ligase middle domain A3858_03500 PF01565 FAD binding domain A3858_03500 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain A3858_03505 PF01820 D-ala D-ala ligase N-terminus A3858_03505 PF07478 D-ala D-ala ligase C-terminus A3858_03510 PF08478 POTRA domain, FtsQ-type A3858_03510 PF03799 Cell division protein FtsQ A3858_03515 PF02491 SHS2 domain inserted in FTSA A3858_03520 PF00091 Tubulin/FtsZ family, GTPase domain A3858_03520 PF12327 FtsZ family, C-terminal domain A3858_03525 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase A3858_03530 PF13525 Outer membrane lipoprotein A3858_03535 PF02463 RecF/RecN/SMC N terminal domain A3858_03545 PF01565 FAD binding domain A3858_03545 PF02913 FAD linked oxidases, C-terminal domain A3858_03555 PF02607 B12 binding domain A3858_03555 PF02310 B12 binding domain A3858_03560 PF04055 Radical SAM superfamily A3858_03565 PF02574 Homocysteine S-methyltransferase A3858_03565 PF00809 Pterin binding enzyme A3858_03565 PF02965 Vitamin B12 dependent methionine synthase, activation domain A3858_03565 PF02310 B12 binding domain A3858_03565 PF02607 B12 binding domain A3858_03575 PF01259 SAICAR synthetase A3858_03580 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase A3858_03590 PF02743 Cache domain A3858_03590 PF00512 His Kinase A (phospho-acceptor) domain A3858_03590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_03595 PF00072 Response regulator receiver domain A3858_03595 PF02954 Bacterial regulatory protein, Fis family A3858_03595 PF00158 Sigma-54 interaction domain A3858_03610 PF02683 Cytochrome C biogenesis protein transmembrane region A3858_03630 PF00206 Lyase A3858_03630 PF10415 Fumarase C C-terminus A3858_03650 PF13416 Bacterial extracellular solute-binding protein A3858_03655 PF00266 Aminotransferase class-V A3858_03660 PF00875 DNA photolyase A3858_03660 PF03441 FAD binding domain of DNA photolyase A3858_03675 PF00293 NUDIX domain A3858_03680 PF00291 Pyridoxal-phosphate dependent enzyme A3858_03680 PF00571 CBS domain A3858_03685 PF00924 Mechanosensitive ion channel A3858_03685 PF12795 Mechanosensitive ion channel porin domain A3858_03685 PF12794 Mechanosensitive ion channel inner membrane domain 1 A3858_03690 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain A3858_03690 PF01411 tRNA synthetases class II (A) A3858_03690 PF02272 DHHA1 domain A3858_03695 PF00535 Glycosyl transferase family 2 A3858_03725 PF00528 Binding-protein-dependent transport system inner membrane component A3858_03740 PF00005 ABC transporter A3858_03740 PF08402 TOBE domain A3858_03765 PF01037 Lrp/AsnC ligand binding domain A3858_03770 PF01619 Proline dehydrogenase A3858_03770 PF00171 Aldehyde dehydrogenase family A3858_03770 PF14850 DNA-binding domain of Proline dehydrogenase A3858_03770 PF18327 Proline utilization A proline dehydrogenase N-terminal domain A3858_03785 PF00459 Inositol monophosphatase family A3858_03790 PF01384 Phosphate transporter family A3858_03795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_03795 PF03466 LysR substrate binding domain A3858_03800 PF02219 Methylenetetrahydrofolate reductase A3858_03805 PF02632 BioY family A3858_03810 PF02361 Cobalt transport protein A3858_03815 PF00005 ABC transporter A3858_03825 PF02481 DNA recombination-mediator protein A A3858_03830 PF01396 Topoisomerase DNA binding C4 zinc finger A3858_03830 PF01131 DNA topoisomerase A3858_03830 PF01751 Toprim domain A3858_03830 PF13368 Topoisomerase C-terminal repeat A3858_03835 PF00571 CBS domain A3858_03835 PF00005 ABC transporter A3858_03840 PF00528 Binding-protein-dependent transport system inner membrane component A3858_03845 PF04069 Substrate binding domain of ABC-type glycine betaine transport system A3858_03850 PF00440 Bacterial regulatory proteins, tetR family A3858_03850 PF13977 BetI-type transcriptional repressor, C-terminal A3858_03855 PF00171 Aldehyde dehydrogenase family A3858_03860 PF00732 GMC oxidoreductase A3858_03860 PF05199 GMC oxidoreductase A3858_03870 PF06114 IrrE N-terminal-like domain A3858_03870 PF09856 Predicted transcriptional regulator (DUF2083) A3858_03870 PF01381 Helix-turn-helix A3858_03875 PF07690 Major Facilitator Superfamily A3858_03885 PF01039 Carboxyl transferase domain A3858_03905 PF02785 Biotin carboxylase C-terminal domain A3858_03905 PF00289 Biotin carboxylase, N-terminal domain A3858_03905 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A3858_03920 PF08669 Glycine cleavage T-protein C-terminal barrel domain A3858_03920 PF01571 Aminomethyltransferase folate-binding domain A3858_03925 PF01597 Glycine cleavage H-protein A3858_03930 PF02347 Glycine cleavage system P-protein A3858_03935 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain A3858_03935 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain A3858_03935 PF00378 Enoyl-CoA hydratase/isomerase A3858_03940 PF00108 Thiolase, N-terminal domain A3858_03940 PF02803 Thiolase, C-terminal domain A3858_03950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A3858_03950 PF02770 Acyl-CoA dehydrogenase, middle domain A3858_03950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A3858_03950 PF12806 Acetyl-CoA dehydrogenase C-terminal like A3858_03955 PF09278 MerR, DNA binding A3858_03955 PF00376 MerR family regulatory protein A3858_03960 PF00376 MerR family regulatory protein A3858_03960 PF09278 MerR, DNA binding A3858_03975 PF01554 MatE A3858_03985 PF01925 Sulfite exporter TauE/SafE A3858_03990 PF01048 Phosphorylase superfamily A3858_04020 PF00814 Glycoprotease family A3858_04025 PF01106 NifU-like domain A3858_04035 PF01063 Amino-transferase class IV A3858_04040 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily A3858_04045 PF01476 LysM domain A3858_04045 PF03734 L,D-transpeptidase catalytic domain A3858_04060 PF10397 Adenylosuccinate lyase C-terminus A3858_04060 PF00206 Lyase A3858_04065 PF03891 Domain of unknown function (DUF333) A3858_04070 PF00873 AcrB/AcrD/AcrF family A3858_04075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A3858_04085 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) A3858_04085 PF00128 Alpha amylase, catalytic domain A3858_04090 PF00483 Nucleotidyl transferase A3858_04095 PF07536 HWE histidine kinase A3858_04095 PF08447 PAS fold A3858_04095 PF13426 PAS domain A3858_04100 PF01739 CheR methyltransferase, SAM binding domain A3858_04100 PF08448 PAS fold A3858_04100 PF01339 CheB methylesterase A3858_04100 PF03705 CheR methyltransferase, all-alpha domain A3858_04115 PF03167 Uracil DNA glycosylase superfamily A3858_04135 PF13533 Biotin-lipoyl like A3858_04140 PF07690 Major Facilitator Superfamily A3858_04155 PF00588 SpoU rRNA Methylase family A3858_04155 PF08032 RNA 2'-O ribose methyltransferase substrate binding A3858_04160 PF13380 CoA binding domain A3858_04165 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase A3858_04170 PF00977 Histidine biosynthesis protein A3858_04175 PF00977 Histidine biosynthesis protein A3858_04185 PF00117 Glutamine amidotransferase class-I A3858_04190 PF00475 Imidazoleglycerol-phosphate dehydratase A3858_04195 PF14492 Elongation Factor G, domain II A3858_04195 PF03764 Elongation factor G, domain IV A3858_04195 PF00679 Elongation factor G C-terminus A3858_04195 PF00009 Elongation factor Tu GTP binding domain A3858_04200 PF07690 Major Facilitator Superfamily A3858_04210 PF00561 alpha/beta hydrolase fold A3858_04215 PF00291 Pyridoxal-phosphate dependent enzyme A3858_04220 PF00561 alpha/beta hydrolase fold A3858_04225 PF00664 ABC transporter transmembrane region A3858_04225 PF00005 ABC transporter A3858_04230 PF13193 AMP-binding enzyme C-terminal domain A3858_04230 PF00501 AMP-binding enzyme A3858_04235 PF02580 D-Tyr-tRNA(Tyr) deacylase A3858_04240 PF00294 pfkB family carbohydrate kinase A3858_04245 PF01259 SAICAR synthetase A3858_04280 PF05816 Toxic anion resistance protein (TelA) A3858_04290 PF00849 RNA pseudouridylate synthase A3858_04290 PF01479 S4 domain A3858_04295 PF14437 MafB19-like deaminase A3858_04310 PF02686 Glu-tRNAGln amidotransferase C subunit A3858_04315 PF01425 Amidase A3858_04325 PF01510 N-acetylmuramoyl-L-alanine amidase A3858_04335 PF14535 AMP-binding enzyme C-terminal domain A3858_04335 PF00501 AMP-binding enzyme A3858_04340 PF00005 ABC transporter A3858_04355 PF02653 Branched-chain amino acid transport system / permease component A3858_04360 PF00005 ABC transporter A3858_04360 PF12399 Branched-chain amino acid ATP-binding cassette transporter A3858_04370 PF00501 AMP-binding enzyme A3858_04375 PF00072 Response regulator receiver domain A3858_04375 PF13188 PAS domain A3858_04375 PF08448 PAS fold A3858_04375 PF00512 His Kinase A (phospho-acceptor) domain A3858_04375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_04380 PF00072 Response regulator receiver domain A3858_04380 PF00486 Transcriptional regulatory protein, C terminal A3858_04395 PF01479 S4 domain A3858_04395 PF00163 Ribosomal protein S4/S9 N-terminal domain A3858_04400 PF00155 Aminotransferase class I and II A3858_04405 PF02153 Prephenate dehydrogenase A3858_04420 PF04752 ChaC-like protein A3858_04445 PF00004 ATPase family associated with various cellular activities (AAA) A3858_04445 PF07724 AAA domain (Cdc48 subfamily) A3858_04445 PF17871 AAA lid domain A3858_04445 PF10431 C-terminal, D2-small domain, of ClpB protein A3858_04445 PF02861 Clp amino terminal domain, pathogenicity island component A3858_04450 PF00753 Metallo-beta-lactamase superfamily A3858_04450 PF16123 Hydroxyacylglutathione hydrolase C-terminus A3858_04455 PF08241 Methyltransferase domain A3858_04460 PF00213 ATP synthase delta (OSCP) subunit A3858_04465 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A3858_04465 PF02874 ATP synthase alpha/beta family, beta-barrel domain A3858_04465 PF00306 ATP synthase alpha/beta chain, C terminal domain A3858_04470 PF00231 ATP synthase A3858_04475 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A3858_04475 PF02874 ATP synthase alpha/beta family, beta-barrel domain A3858_04480 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain A3858_04485 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase A3858_04485 PF14572 Phosphoribosyl synthetase-associated domain A3858_04490 PF01212 Beta-eliminating lyase A3858_04495 PF03692 Putative zinc- or iron-chelating domain A3858_04500 PF01687 Riboflavin kinase A3858_04500 PF06574 FAD synthetase A3858_04505 PF01575 MaoC like domain A3858_04515 PF02833 DHHA2 domain A3858_04515 PF01368 DHH family A3858_04525 PF00166 Chaperonin 10 Kd subunit A3858_04530 PF00118 TCP-1/cpn60 chaperonin family A3858_04540 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain A3858_04540 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A3858_04545 PF00248 Aldo/keto reductase family A3858_04555 PF01266 FAD dependent oxidoreductase A3858_04560 PF00465 Iron-containing alcohol dehydrogenase A3858_04565 PF00171 Aldehyde dehydrogenase family A3858_04570 PF00120 Glutamine synthetase, catalytic domain A3858_04570 PF03951 Glutamine synthetase, beta-Grasp domain A3858_04575 PF03480 Bacterial extracellular solute-binding protein, family 7 A3858_04580 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component A3858_04600 PF01098 Cell cycle protein A3858_04605 PF03717 Penicillin-binding Protein dimerisation domain A3858_04605 PF00905 Penicillin binding protein transpeptidase domain A3858_04615 PF04085 rod shape-determining protein MreC A3858_04625 PF00842 Alanine racemase, C-terminal domain A3858_04625 PF01168 Alanine racemase, N-terminal domain A3858_04625 PF01757 Acyltransferase family A3858_04630 PF08502 LeuA allosteric (dimerisation) domain A3858_04630 PF00682 HMGL-like A3858_04635 PF00127 Copper binding proteins, plastocyanin/azurin family A3858_04645 PF00795 Carbon-nitrogen hydrolase A3858_04645 PF02540 NAD synthase A3858_04650 PF00294 pfkB family carbohydrate kinase A3858_04655 PF03358 NADPH-dependent FMN reductase A3858_04685 PF18693 TRAM domain A3858_04685 PF04055 Radical SAM superfamily A3858_04685 PF00919 Uncharacterized protein family UPF0004 A3858_04690 PF00155 Aminotransferase class I and II A3858_04695 PF00156 Phosphoribosyl transferase domain A3858_04710 PF01243 Pyridoxamine 5'-phosphate oxidase A3858_04710 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region A3858_04715 PF00313 'Cold-shock' DNA-binding domain A3858_04810 PF00392 Bacterial regulatory proteins, gntR family A3858_04810 PF07702 UTRA domain A3858_04820 PF00596 Class II Aldolase and Adducin N-terminal domain A3858_04830 PF00005 ABC transporter A3858_04835 PF02653 Branched-chain amino acid transport system / permease component A3858_04840 PF02653 Branched-chain amino acid transport system / permease component A3858_04845 PF00294 pfkB family carbohydrate kinase A3858_04855 PF00171 Aldehyde dehydrogenase family A3858_04870 PF02696 Uncharacterized ACR, YdiU/UPF0061 family A3858_04875 PF00155 Aminotransferase class I and II A3858_04880 PF00107 Zinc-binding dehydrogenase A3858_04880 PF08240 Alcohol dehydrogenase GroES-like domain A3858_04885 PF00067 Cytochrome P450 A3858_04895 PF18011 C-terminal domain found in long catalases A3858_04895 PF00199 Catalase A3858_04895 PF06628 Catalase-related immune-responsive A3858_04905 PF02245 Methylpurine-DNA glycosylase (MPG) A3858_04935 PF06146 Phosphate-starvation-inducible E A3858_04940 PF01008 Initiation factor 2 subunit family A3858_04955 PF00255 Glutathione peroxidase A3858_04960 PF00850 Histone deacetylase domain A3858_04980 PF00034 Cytochrome c A3858_04980 PF03150 Di-haem cytochrome c peroxidase A3858_04990 PF13416 Bacterial extracellular solute-binding protein A3858_04995 PF00528 Binding-protein-dependent transport system inner membrane component A3858_05000 PF00528 Binding-protein-dependent transport system inner membrane component A3858_05005 PF00005 ABC transporter A3858_05005 PF08402 TOBE domain A3858_05010 PF01425 Amidase A3858_05015 PF00593 TonB dependent receptor A3858_05015 PF07715 TonB-dependent Receptor Plug Domain A3858_05025 PF01032 FecCD transport family A3858_05030 PF00005 ABC transporter A3858_05040 PF00072 Response regulator receiver domain A3858_05040 PF00512 His Kinase A (phospho-acceptor) domain A3858_05040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_05040 PF09308 LuxQ, periplasmic A3858_05050 PF00849 RNA pseudouridylate synthase A3858_05055 PF04545 Sigma-70, region 4 A3858_05055 PF00140 Sigma-70 factor, region 1.2 A3858_05055 PF04542 Sigma-70 region 2 A3858_05070 PF04679 ATP dependent DNA ligase C terminal region A3858_05070 PF04675 DNA ligase N terminus A3858_05070 PF01068 ATP dependent DNA ligase domain A3858_05080 PF14403 Circularly permuted ATP-grasp type 2 A3858_05085 PF14403 Circularly permuted ATP-grasp type 2 A3858_05085 PF04168 A predicted alpha-helical domain with a conserved ER motif. A3858_05130 PF11953 Domain of unknown function (DUF3470) A3858_05130 PF00037 4Fe-4S binding domain A3858_05135 PF02559 CarD-like/TRCF domain A3858_05140 PF02654 Cobalamin-5-phosphate synthase A3858_05145 PF02277 Phosphoribosyltransferase A3858_05150 PF02254 TrkA-N domain A3858_05150 PF00999 Sodium/hydrogen exchanger family A3858_05160 PF04402 Protein of unknown function (DUF541) A3858_05165 PF01053 Cys/Met metabolism PLP-dependent enzyme A3858_05175 PF00072 Response regulator receiver domain A3858_05180 PF03705 CheR methyltransferase, all-alpha domain A3858_05180 PF01739 CheR methyltransferase, SAM binding domain A3858_05185 PF01584 CheW-like domain A3858_05190 PF01627 Hpt domain A3858_05190 PF01584 CheW-like domain A3858_05190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_05190 PF02895 Signal transducing histidine kinase, homodimeric domain A3858_05195 PF00072 Response regulator receiver domain A3858_05205 PF03975 CheD chemotactic sensory transduction A3858_05220 PF02203 Tar ligand binding domain homologue A3858_05220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A3858_05220 PF00672 HAMP domain A3858_05225 PF00072 Response regulator receiver domain A3858_05235 PF11896 Domain of unknown function (DUF3416) A3858_05235 PF00128 Alpha amylase, catalytic domain A3858_05240 PF00128 Alpha amylase, catalytic domain A3858_05240 PF16657 Maltogenic Amylase, C-terminal domain A3858_05245 PF02806 Alpha amylase, C-terminal all-beta domain A3858_05245 PF00128 Alpha amylase, catalytic domain A3858_05245 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) A3858_05250 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) A3858_05250 PF00128 Alpha amylase, catalytic domain A3858_05255 PF11941 Domain of unknown function (DUF3459) A3858_05255 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) A3858_05255 PF00128 Alpha amylase, catalytic domain A3858_05260 PF02446 4-alpha-glucanotransferase A3858_05265 PF00128 Alpha amylase, catalytic domain A3858_05270 PF00106 short chain dehydrogenase A3858_05275 PF13537 Glutamine amidotransferase domain A3858_05275 PF00156 Phosphoribosyl transferase domain A3858_05285 PF18073 Rubredoxin metal binding domain A3858_05285 PF06745 KaiC A3858_05295 PF00005 ABC transporter A3858_05300 PF02405 Permease MlaE A3858_05305 PF01168 Alanine racemase, N-terminal domain A3858_05305 PF00842 Alanine racemase, C-terminal domain A3858_05315 PF00550 Phosphopantetheine attachment site A3858_05320 PF02801 Beta-ketoacyl synthase, C-terminal domain A3858_05320 PF00109 Beta-ketoacyl synthase, N-terminal domain A3858_05325 PF02618 YceG-like family A3858_05340 PF04860 Phage portal protein A3858_05415 PF00132 Bacterial transferase hexapeptide (six repeats) A3858_05415 PF06426 Serine acetyltransferase, N-terminal A3858_05420 PF02817 e3 binding domain A3858_05420 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) A3858_05420 PF00364 Biotin-requiring enzyme A3858_05425 PF00364 Biotin-requiring enzyme A3858_05425 PF02779 Transketolase, pyrimidine binding domain A3858_05425 PF02780 Transketolase, C-terminal domain A3858_05430 PF00676 Dehydrogenase E1 component A3858_05435 PF04977 Septum formation initiator A3858_05440 PF01791 DeoC/LacD family aldolase A3858_05445 PF00162 Phosphoglycerate kinase A3858_05450 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD A3858_05455 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD A3858_05460 PF00579 tRNA synthetases class I (W and Y) A3858_05465 PF03702 Anhydro-N-acetylmuramic acid kinase A3858_05480 PF00113 Enolase, C-terminal TIM barrel domain A3858_05480 PF03952 Enolase, N-terminal domain A3858_05485 PF00892 EamA-like transporter family A3858_05490 PF01475 Ferric uptake regulator family A3858_05495 PF08471 Class II vitamin B12-dependent ribonucleotide reductase A3858_05495 PF02867 Ribonucleotide reductase, barrel domain A3858_05525 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain A3858_05525 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain A3858_05530 PF01380 SIS domain A3858_05535 PF00132 Bacterial transferase hexapeptide (six repeats) A3858_05535 PF12804 MobA-like NTP transferase domain A3858_05540 PF13419 Haloacid dehalogenase-like hydrolase A3858_05550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A3858_05550 PF02770 Acyl-CoA dehydrogenase, middle domain A3858_05550 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A3858_05555 PF03922 OmpW family A3858_05560 PF01039 Carboxyl transferase domain A3858_05565 PF02785 Biotin carboxylase C-terminal domain A3858_05565 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A3858_05565 PF00289 Biotin carboxylase, N-terminal domain A3858_05565 PF00364 Biotin-requiring enzyme A3858_05570 PF00682 HMGL-like A3858_05575 PF00378 Enoyl-CoA hydratase/isomerase A3858_05580 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 A3858_05585 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit A3858_05590 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit A3858_05595 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit A3858_05610 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit A3858_05610 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region A3858_05610 PF10531 SLBB domain A3858_05620 PF00384 Molybdopterin oxidoreductase A3858_05620 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal A3858_05620 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region A3858_05630 PF00146 NADH dehydrogenase A3858_05635 PF12838 4Fe-4S dicluster domain A3858_05640 PF02627 Carboxymuconolactone decarboxylase family A3858_05645 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 A3858_05650 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L A3858_05655 PF00361 Proton-conducting membrane transporter A3858_05655 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus A3858_05660 PF00361 Proton-conducting membrane transporter A3858_05660 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus A3858_05665 PF00361 Proton-conducting membrane transporter A3858_05670 PF02237 Biotin protein ligase C terminal domain A3858_05670 PF03099 Biotin/lipoate A/B protein ligase family A3858_05675 PF03309 Type III pantothenate kinase A3858_05680 PF17770 Ribonuclease J C-terminal domain A3858_05680 PF12706 Beta-lactamase superfamily domain A3858_05680 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain A3858_05685 PF00271 Helicase conserved C-terminal domain A3858_05685 PF00270 DEAD/DEAH box helicase A3858_05690 PF03144 Elongation factor Tu domain 2 A3858_05690 PF00009 Elongation factor Tu GTP binding domain A3858_05690 PF16658 Class II release factor RF3, C-terminal domain A3858_05700 PF00005 ABC transporter A3858_05700 PF08402 TOBE domain A3858_05705 PF02416 mttA/Hcf106 family A3858_05710 PF02416 mttA/Hcf106 family A3858_05715 PF00902 Sec-independent protein translocase protein (TatC) A3858_05725 PF01476 LysM domain A3858_05725 PF01551 Peptidase family M23 A3858_05735 PF01975 Survival protein SurE A3858_05740 PF02397 Bacterial sugar transferase A3858_05755 PF00722 Glycosyl hydrolases family 16 A3858_05760 PF00535 Glycosyl transferase family 2 A3858_05765 PF00535 Glycosyl transferase family 2 A3858_05795 PF00005 ABC transporter A3858_05795 PF00664 ABC transporter transmembrane region A3858_05805 PF13807 G-rich domain on putative tyrosine kinase A3858_05805 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain A3858_05805 PF02706 Chain length determinant protein A3858_05815 PF00535 Glycosyl transferase family 2 A3858_05825 PF00483 Nucleotidyl transferase A3858_05830 PF04321 RmlD substrate binding domain A3858_05840 PF16363 GDP-mannose 4,6 dehydratase A3858_05845 PF01965 DJ-1/PfpI family A3858_05850 PF00296 Luciferase-like monooxygenase A3858_05855 PF00027 Cyclic nucleotide-binding domain A3858_05855 PF13545 Crp-like helix-turn-helix domain A3858_05870 PF04828 Glutathione-dependent formaldehyde-activating enzyme A3858_05875 PF08240 Alcohol dehydrogenase GroES-like domain A3858_05875 PF00107 Zinc-binding dehydrogenase A3858_05880 PF00034 Cytochrome c A3858_05885 PF13360 PQQ-like domain A3858_05895 PF00497 Bacterial extracellular solute-binding proteins, family 3 A3858_05925 PF00005 ABC transporter A3858_05950 PF00072 Response regulator receiver domain A3858_05950 PF00196 Bacterial regulatory proteins, luxR family A3858_05960 PF00672 HAMP domain A3858_05960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_05960 PF00072 Response regulator receiver domain A3858_05960 PF00512 His Kinase A (phospho-acceptor) domain A3858_05960 PF01627 Hpt domain A3858_05975 PF00005 ABC transporter A3858_05985 PF00528 Binding-protein-dependent transport system inner membrane component A3858_05990 PF00072 Response regulator receiver domain A3858_05990 PF00486 Transcriptional regulatory protein, C terminal A3858_05995 PF01895 PhoU domain A3858_06000 PF00005 ABC transporter A3858_06005 PF00528 Binding-protein-dependent transport system inner membrane component A3858_06010 PF00528 Binding-protein-dependent transport system inner membrane component A3858_06025 PF01022 Bacterial regulatory protein, arsR family A3858_06030 PF01613 Flavin reductase like domain A3858_06035 PF01544 CorA-like Mg2+ transporter protein A3858_06040 PF00692 dUTPase A3858_06050 PF13411 MerR HTH family regulatory protein A3858_06055 PF00216 Bacterial DNA-binding protein A3858_06060 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III A3858_06060 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal A3858_06065 PF02504 Fatty acid synthesis protein A3858_06070 PF01783 Ribosomal L32p protein family A3858_06085 PF01641 SelR domain A3858_06105 PF00486 Transcriptional regulatory protein, C terminal A3858_06105 PF00072 Response regulator receiver domain A3858_06110 PF00533 BRCA1 C Terminus (BRCT) domain A3858_06110 PF12826 Helix-hairpin-helix motif A3858_06110 PF03119 NAD-dependent DNA ligase C4 zinc finger domain A3858_06110 PF03120 NAD-dependent DNA ligase OB-fold domain A3858_06110 PF01653 NAD-dependent DNA ligase adenylation domain A3858_06115 PF00271 Helicase conserved C-terminal domain A3858_06115 PF00270 DEAD/DEAH box helicase A3858_06115 PF17191 RecG wedge domain A3858_06125 PF01502 Phosphoribosyl-AMP cyclohydrolase A3858_06130 PF00749 tRNA synthetases class I (E and Q), catalytic domain A3858_06135 PF01134 Glucose inhibited division protein A A3858_06140 PF03989 DNA gyrase C-terminal domain, beta-propeller A3858_06140 PF00521 DNA gyrase/topoisomerase IV, subunit A A3858_06145 PF06233 Usg-like family A3858_06150 PF00491 Arginase family A3858_06155 PF01578 Cytochrome C assembly protein A3858_06155 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal A3858_06160 PF03918 Cytochrome C biogenesis protein A3858_06165 PF00378 Enoyl-CoA hydratase/isomerase A3858_06170 PF01842 ACT domain A3858_06170 PF10369 Small subunit of acetolactate synthase A3858_06175 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain A3858_06175 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain A3858_06175 PF00205 Thiamine pyrophosphate enzyme, central domain A3858_06180 PF01699 Sodium/calcium exchanger protein A3858_06185 PF04377 Arginine-tRNA-protein transferase, C terminus A3858_06185 PF04376 Arginine-tRNA-protein transferase, N terminus A3858_06205 PF08335 GlnD PII-uridylyltransferase A3858_06205 PF03710 Glutamate-ammonia ligase adenylyltransferase A3858_06215 PF01081 KDPG and KHG aldolase A3858_06220 PF00920 Dehydratase family A3858_06255 PF02861 Clp amino terminal domain, pathogenicity island component A3858_06255 PF00004 ATPase family associated with various cellular activities (AAA) A3858_06255 PF07724 AAA domain (Cdc48 subfamily) A3858_06255 PF17871 AAA lid domain A3858_06255 PF10431 C-terminal, D2-small domain, of ClpB protein A3858_06260 PF01258 Prokaryotic dksA/traR C4-type zinc finger A3858_06265 PF01494 FAD binding domain A3858_06280 PF01521 Iron-sulphur cluster biosynthesis A3858_06285 PF01966 HD domain A3858_06285 PF13286 Phosphohydrolase-associated domain A3858_06290 PF03631 Virulence factor BrkB A3858_06300 PF00370 FGGY family of carbohydrate kinases, N-terminal domain A3858_06300 PF02782 FGGY family of carbohydrate kinases, C-terminal domain A3858_06315 PF00528 Binding-protein-dependent transport system inner membrane component A3858_06320 PF00528 Binding-protein-dependent transport system inner membrane component A3858_06325 PF00005 ABC transporter A3858_06325 PF08402 TOBE domain A3858_06335 PF16901 C-terminal domain of alpha-glycerophosphate oxidase A3858_06335 PF01266 FAD dependent oxidoreductase A3858_06350 PF01011 PQQ enzyme repeat A3858_06375 PF02308 MgtC family A3858_06385 PF01068 ATP dependent DNA ligase domain A3858_06385 PF04679 ATP dependent DNA ligase C terminal region A3858_06385 PF13298 DNA polymerase Ligase (LigD) A3858_06395 PF04542 Sigma-70 region 2 A3858_06395 PF08281 Sigma-70, region 4 A3858_06400 PF00698 Acyl transferase domain A3858_06410 PF03652 Holliday junction resolvase A3858_06420 PF01266 FAD dependent oxidoreductase A3858_06435 PF01571 Aminomethyltransferase folate-binding domain A3858_06435 PF08669 Glycine cleavage T-protein C-terminal barrel domain A3858_06435 PF17806 Sarcosine oxidase A3 domain A3858_06435 PF07992 Pyridine nucleotide-disulphide oxidoreductase A3858_06445 PF01757 Acyltransferase family A3858_06450 PF02777 Iron/manganese superoxide dismutases, C-terminal domain A3858_06450 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain A3858_06455 PF03641 Possible lysine decarboxylase A3858_06465 PF00005 ABC transporter A3858_06465 PF00664 ABC transporter transmembrane region A3858_06480 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal A3858_06480 PF01926 50S ribosome-binding GTPase A3858_06485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A3858_06485 PF00005 ABC transporter A3858_06490 PF12911 N-terminal TM domain of oligopeptide transport permease C A3858_06490 PF00528 Binding-protein-dependent transport system inner membrane component A3858_06495 PF00528 Binding-protein-dependent transport system inner membrane component A3858_06510 PF00696 Amino acid kinase family A3858_06515 PF01765 Ribosome recycling factor A3858_06520 PF01255 Putative undecaprenyl diphosphate synthase A3858_06530 PF13288 DXP reductoisomerase C-terminal domain A3858_06530 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase A3858_06530 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain A3858_06535 PF17820 PDZ domain A3858_06535 PF02163 Peptidase family M50 A3858_06540 PF01103 Surface antigen A3858_06540 PF07244 Surface antigen variable number repeat A3858_06550 PF07977 FabA-like domain A3858_06555 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 A3858_06555 PF00132 Bacterial transferase hexapeptide (six repeats) A3858_06560 PF17930 LpxI N-terminal domain A3858_06560 PF06230 LpxI C-terminal domain A3858_06565 PF02684 Lipid-A-disaccharide synthetase A3858_06595 PF01406 tRNA synthetases class I (C) catalytic domain A3858_06600 PF08502 LeuA allosteric (dimerisation) domain A3858_06600 PF00682 HMGL-like A3858_06615 PF07690 Major Facilitator Superfamily A3858_06620 PF06029 AlkA N-terminal domain A3858_06620 PF00730 HhH-GPD superfamily base excision DNA repair protein A3858_06645 PF03358 NADPH-dependent FMN reductase A3858_06655 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain A3858_06655 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain A3858_06660 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase A3858_06665 PF00342 Phosphoglucose isomerase A3858_06670 PF01042 Endoribonuclease L-PSP A3858_06675 PF00581 Rhodanese-like domain A3858_06680 PF04143 Sulphur transport A3858_06685 PF07995 Glucose / Sorbosone dehydrogenase A3858_06690 PF00034 Cytochrome c A3858_06710 PF17103 Stealth protein CR4, conserved region 4 A3858_06710 PF11380 Stealth protein CR2, conserved region 2 A3858_06710 PF00534 Glycosyl transferases group 1 A3858_06710 PF17102 Stealth protein CR3, conserved region 3 A3858_06710 PF17101 Stealth protein CR1, conserved region 1 A3858_06720 PF13439 Glycosyltransferase Family 4 A3858_06720 PF00534 Glycosyl transferases group 1 A3858_06730 PF00589 Phage integrase family A3858_06730 PF13356 Arm DNA-binding domain A3858_06835 PF02219 Methylenetetrahydrofolate reductase A3858_06845 PF02541 Ppx/GppA phosphatase family A3858_06850 PF01728 FtsJ-like methyltransferase A3858_06855 PF05951 Bacterial protein of unknown function (DUF882) A3858_06865 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD A3858_06865 PF00132 Bacterial transferase hexapeptide (six repeats) A3858_06870 PF00550 Phosphopantetheine attachment site A3858_06875 PF00109 Beta-ketoacyl synthase, N-terminal domain A3858_06875 PF02801 Beta-ketoacyl synthase, C-terminal domain A3858_06885 PF00199 Catalase A3858_06885 PF06628 Catalase-related immune-responsive A3858_06890 PF03466 LysR substrate binding domain A3858_06890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_06895 PF08534 Redoxin A3858_06900 PF00230 Major intrinsic protein A3858_06905 PF04055 Radical SAM superfamily A3858_06910 PF00034 Cytochrome c A3858_06915 PF01322 Cytochrome C' A3858_06925 PF03364 Polyketide cyclase / dehydrase and lipid transport A3858_06935 PF00834 Ribulose-phosphate 3 epimerase family A3858_06945 PF00889 Elongation factor TS A3858_06950 PF00318 Ribosomal protein S2 A3858_06960 PF04227 Indigoidine synthase A like protein A3858_06970 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A3858_06980 PF00873 AcrB/AcrD/AcrF family A3858_06990 PF18665 Tetracyclin repressor-like, C-terminal domain A3858_06990 PF00440 Bacterial regulatory proteins, tetR family A3858_06995 PF01323 DSBA-like thioredoxin domain A3858_07000 PF07690 Major Facilitator Superfamily A3858_07005 PF02559 CarD-like/TRCF domain A3858_07005 PF00271 Helicase conserved C-terminal domain A3858_07005 PF17757 UvrB interaction domain A3858_07005 PF00270 DEAD/DEAH box helicase A3858_07005 PF03461 TRCF domain A3858_07015 PF00490 Delta-aminolevulinic acid dehydratase A3858_07025 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase A3858_07025 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase A3858_07030 PF01804 Penicillin amidase A3858_07035 PF01926 50S ribosome-binding GTPase A3858_07035 PF13167 GTP-binding GTPase N-terminal A3858_07035 PF16360 GTP-binding GTPase Middle Region A3858_07040 PF17209 Hfq protein A3858_07050 PF02254 TrkA-N domain A3858_07050 PF02080 TrkA-C domain A3858_07055 PF02954 Bacterial regulatory protein, Fis family A3858_07055 PF00158 Sigma-54 interaction domain A3858_07055 PF00072 Response regulator receiver domain A3858_07060 PF00512 His Kinase A (phospho-acceptor) domain A3858_07060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_07060 PF00989 PAS fold A3858_07060 PF00672 HAMP domain A3858_07065 PF14532 Sigma-54 interaction domain A3858_07065 PF02954 Bacterial regulatory protein, Fis family A3858_07065 PF00072 Response regulator receiver domain A3858_07070 PF00512 His Kinase A (phospho-acceptor) domain A3858_07070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_07075 PF01207 Dihydrouridine synthase (Dus) A3858_07080 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase A3858_07085 PF02542 YgbB family A3858_07095 PF02464 Competence-damaged protein A3858_07095 PF00994 Probable molybdopterin binding domain A3858_07095 PF18146 Damage-inducible protein CinA KH domain A3858_07115 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP A3858_07130 PF07683 Cobalamin synthesis protein cobW C-terminal domain A3858_07130 PF02492 CobW/HypB/UreG, nucleotide-binding domain A3858_07135 PF02514 CobN/Magnesium Chelatase A3858_07140 PF02570 Precorrin-8X methylmutase A3858_07145 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A3858_07150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A3858_07155 PF02571 Precorrin-6x reductase CbiJ/CobK A3858_07160 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A3858_07170 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A3858_07175 PF10414 Sirohaem synthase dimerisation region A3858_07175 PF14824 Sirohaem biosynthesis protein central A3858_07175 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A3858_07180 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A3858_07185 PF01761 3-dehydroquinate synthase A3858_07190 PF01202 Shikimate kinase A3858_07200 PF02899 Phage integrase, N-terminal SAM-like domain A3858_07200 PF00589 Phage integrase family A3858_07205 PF01595 Cyclin M transmembrane N-terminal domain A3858_07205 PF00571 CBS domain A3858_07205 PF03471 Transporter associated domain A3858_07220 PF06253 Trimethylamine methyltransferase (MTTB) A3858_07235 PF00005 ABC transporter A3858_07240 PF02405 Permease MlaE A3858_07260 PF05362 Lon protease (S16) C-terminal proteolytic domain A3858_07260 PF02190 ATP-dependent protease La (LON) substrate-binding domain A3858_07260 PF00004 ATPase family associated with various cellular activities (AAA) A3858_07265 PF00724 NADH:flavin oxidoreductase / NADH oxidase family A3858_07270 PF01702 Queuine tRNA-ribosyltransferase A3858_07275 PF00873 AcrB/AcrD/AcrF family A3858_07295 PF02954 Bacterial regulatory protein, Fis family A3858_07295 PF13426 PAS domain A3858_07295 PF00158 Sigma-54 interaction domain A3858_07300 PF08240 Alcohol dehydrogenase GroES-like domain A3858_07300 PF00107 Zinc-binding dehydrogenase A3858_07305 PF00118 TCP-1/cpn60 chaperonin family A3858_07310 PF01883 Iron-sulfur cluster assembly protein A3858_07310 PF10609 NUBPL iron-transfer P-loop NTPase A3858_07320 PF02406 MmoB/DmpM family A3858_07325 PF02332 Methane/Phenol/Toluene Hydroxylase A3858_07330 PF00111 2Fe-2S iron-sulfur cluster binding domain A3858_07330 PF00175 Oxidoreductase NAD-binding domain A3858_07330 PF00970 Oxidoreductase FAD-binding domain A3858_07335 PF02332 Methane/Phenol/Toluene Hydroxylase A3858_07360 PF04963 Sigma-54 factor, core binding domain A3858_07360 PF00309 Sigma-54 factor, Activator interacting domain (AID) A3858_07360 PF04552 Sigma-54, DNA binding domain A3858_07365 PF00478 IMP dehydrogenase / GMP reductase domain A3858_07365 PF00571 CBS domain A3858_07375 PF17912 MalK OB fold domain A3858_07375 PF03459 TOBE domain A3858_07375 PF00005 ABC transporter A3858_07380 PF00528 Binding-protein-dependent transport system inner membrane component A3858_07385 PF00528 Binding-protein-dependent transport system inner membrane component A3858_07390 PF01547 Bacterial extracellular solute-binding protein A3858_07395 PF00232 Glycosyl hydrolase family 1 A3858_07400 PF02685 Glucokinase A3858_07405 PF00941 FAD binding domain in molybdopterin dehydrogenase A3858_07405 PF03450 CO dehydrogenase flavoprotein C-terminal domain A3858_07410 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase A3858_07410 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain A3858_07415 PF01799 [2Fe-2S] binding domain A3858_07415 PF00111 2Fe-2S iron-sulfur cluster binding domain A3858_07425 PF01627 Hpt domain A3858_07425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_07425 PF00512 His Kinase A (phospho-acceptor) domain A3858_07425 PF00072 Response regulator receiver domain A3858_07435 PF00196 Bacterial regulatory proteins, luxR family A3858_07435 PF00072 Response regulator receiver domain A3858_07440 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II A3858_07440 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I A3858_07440 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain A3858_07440 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III A3858_07445 PF00128 Alpha amylase, catalytic domain A3858_07445 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) A3858_07450 PF08323 Starch synthase catalytic domain A3858_07450 PF00534 Glycosyl transferases group 1 A3858_07455 PF00483 Nucleotidyl transferase A3858_07460 PF00343 Carbohydrate phosphorylase A3858_07465 PF02082 Transcriptional regulator A3858_07470 PF09278 MerR, DNA binding A3858_07470 PF00376 MerR family regulatory protein A3858_07475 PF00403 Heavy-metal-associated domain A3858_07485 PF00334 Nucleoside diphosphate kinase A3858_07490 PF00005 ABC transporter A3858_07490 PF12848 ABC transporter A3858_07495 PF01914 MarC family integral membrane protein A3858_07510 PF00883 Cytosol aminopeptidase family, catalytic domain A3858_07515 PF03739 Lipopolysaccharide export system permease LptF/LptG A3858_07525 PF04453 LPS transport system D A3858_07525 PF03968 OstA-like protein A3858_07530 PF00639 PPIC-type PPIASE domain A3858_07530 PF09312 SurA N-terminal domain A3858_07535 PF04166 Pyridoxal phosphate biosynthetic protein PdxA A3858_07540 PF00398 Ribosomal RNA adenine dimethylase A3858_07550 PF17827 PrmC N-terminal domain A3858_07550 PF05175 Methyltransferase small domain A3858_07555 PF00472 RF-1 domain A3858_07555 PF03462 PCRF domain A3858_07565 PF00491 Arginase family A3858_07575 PF03819 MazG nucleotide pyrophosphohydrolase domain A3858_07580 PF13416 Bacterial extracellular solute-binding protein A3858_07585 PF01156 Inosine-uridine preferring nucleoside hydrolase A3858_07590 PF16736 Single Cache-like A3858_07590 PF00989 PAS fold A3858_07590 PF00512 His Kinase A (phospho-acceptor) domain A3858_07590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_07600 PF01053 Cys/Met metabolism PLP-dependent enzyme A3858_07605 PF00132 Bacterial transferase hexapeptide (six repeats) A3858_07610 PF00625 Guanylate kinase A3858_07615 PF03755 YicC-like family, N-terminal region A3858_07615 PF08340 Domain of unknown function (DUF1732) A3858_07625 PF01474 Class-II DAHP synthetase family A3858_07630 PF01965 DJ-1/PfpI family A3858_07630 PF12833 Helix-turn-helix domain A3858_07635 PF13458 Periplasmic binding protein A3858_07640 PF12399 Branched-chain amino acid ATP-binding cassette transporter A3858_07640 PF00005 ABC transporter A3858_07645 PF00005 ABC transporter A3858_07650 PF02653 Branched-chain amino acid transport system / permease component A3858_07675 PF02600 Disulfide bond formation protein DsbB A3858_07680 PF00392 Bacterial regulatory proteins, gntR family A3858_07680 PF07702 UTRA domain A3858_07690 PF01979 Amidohydrolase family A3858_07695 PF00221 Aromatic amino acid lyase A3858_07700 PF01175 Urocanase Rossmann-like domain A3858_07700 PF17392 Urocanase C-terminal domain A3858_07700 PF17391 Urocanase N-terminal domain A3858_07705 PF02811 PHP domain A3858_07705 PF14791 DNA polymerase beta thumb A3858_07705 PF14716 Helix-hairpin-helix domain A3858_07710 PF06299 Protein of unknown function (DUF1045) A3858_07725 PF04079 Segregation and condensation complex subunit ScpB A3858_07730 PF02616 Segregation and condensation protein ScpA A3858_07735 PF00933 Glycosyl hydrolase family 3 N terminal domain A3858_07745 PF05746 DALR anticodon binding domain A3858_07745 PF00750 tRNA synthetases class I (R) A3858_07745 PF03485 Arginyl tRNA synthetase N terminal domain A3858_07760 PF03100 CcmE A3858_07765 PF01118 Semialdehyde dehydrogenase, NAD binding domain A3858_07765 PF02774 Semialdehyde dehydrogenase, dimerisation domain A3858_07770 PF01177 Asp/Glu/Hydantoin racemase A3858_07780 PF03466 LysR substrate binding domain A3858_07780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_07785 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain A3858_07785 PF02769 AIR synthase related protein, C-terminal domain A3858_07785 PF00586 AIR synthase related protein, N-terminal domain A3858_07795 PF00462 Glutaredoxin A3858_07810 PF02780 Transketolase, C-terminal domain A3858_07810 PF02779 Transketolase, pyrimidine binding domain A3858_07810 PF00456 Transketolase, thiamine diphosphate binding domain A3858_07820 PF05661 Protein of unknown function (DUF808) A3858_07825 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain A3858_07825 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain A3858_07830 PF01467 Cytidylyltransferase-like A3858_07845 PF00171 Aldehyde dehydrogenase family A3858_07860 PF00005 ABC transporter A3858_07860 PF17755 UvrA DNA-binding domain A3858_07860 PF17760 UvrA interaction domain A3858_07870 PF07992 Pyridine nucleotide-disulphide oxidoreductase A3858_07870 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A3858_07880 PF07690 Major Facilitator Superfamily A3858_07885 PF02547 Queuosine biosynthesis protein A3858_07895 PF00578 AhpC/TSA family A3858_07900 PF01464 Transglycosylase SLT domain A3858_07900 PF01551 Peptidase family M23 A3858_07900 PF10145 Phage-related minor tail protein A3858_07915 PF00472 RF-1 domain A3858_07915 PF03462 PCRF domain A3858_07920 PF00905 Penicillin binding protein transpeptidase domain A3858_07920 PF17092 Penicillin-binding protein OB-like domain A3858_07920 PF00912 Transglycosylase A3858_07925 PF01520 N-acetylmuramoyl-L-alanine amidase A3858_07940 PF04551 GcpE protein A3858_07950 PF00155 Aminotransferase class I and II A3858_07980 PF02678 Pirin A3858_07980 PF05726 Pirin C-terminal cupin domain A3858_08015 PF07508 Recombinase A3858_08015 PF13408 Recombinase zinc beta ribbon domain A3858_08015 PF00239 Resolvase, N terminal domain A3858_08025 PF00958 GMP synthase C terminal domain A3858_08025 PF00117 Glutamine amidotransferase class-I A3858_08025 PF02540 NAD synthase A3858_08050 PF04204 Homoserine O-succinyltransferase A3858_08055 PF00561 alpha/beta hydrolase fold A3858_08060 PF03976 Polyphosphate kinase 2 (PPK2) A3858_08070 PF00005 ABC transporter A3858_08070 PF08402 TOBE domain A3858_08075 PF00528 Binding-protein-dependent transport system inner membrane component A3858_08080 PF00528 Binding-protein-dependent transport system inner membrane component A3858_08085 PF00155 Aminotransferase class I and II A3858_08100 PF00380 Ribosomal protein S9/S16 A3858_08105 PF00572 Ribosomal protein L13 A3858_08115 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase A3858_08120 PF01408 Oxidoreductase family, NAD-binding Rossmann fold A3858_08120 PF02894 Oxidoreductase family, C-terminal alpha/beta domain A3858_08140 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain A3858_08140 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain A3858_08145 PF08448 PAS fold A3858_08145 PF00563 EAL domain A3858_08145 PF00990 Diguanylate cyclase, GGDEF domain A3858_08145 PF08447 PAS fold A3858_08155 PF04542 Sigma-70 region 2 A3858_08155 PF04539 Sigma-70 region 3 A3858_08155 PF04545 Sigma-70, region 4 A3858_08165 PF00771 FHIPEP family A3858_08220 PF02561 Flagellar protein FliS A3858_08230 PF02895 Signal transducing histidine kinase, homodimeric domain A3858_08230 PF01584 CheW-like domain A3858_08230 PF01627 Hpt domain A3858_08230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_08235 PF01339 CheB methylesterase A3858_08235 PF00072 Response regulator receiver domain A3858_08240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A3858_08240 PF02203 Tar ligand binding domain homologue A3858_08240 PF00672 HAMP domain A3858_08245 PF13614 AAA domain A3858_08250 PF01584 CheW-like domain A3858_08255 PF00072 Response regulator receiver domain A3858_08255 PF01339 CheB methylesterase A3858_08260 PF01739 CheR methyltransferase, SAM binding domain A3858_08260 PF03705 CheR methyltransferase, all-alpha domain A3858_08265 PF01584 CheW-like domain A3858_08265 PF09078 CheY binding A3858_08265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_08265 PF01627 Hpt domain A3858_08265 PF02895 Signal transducing histidine kinase, homodimeric domain A3858_08275 PF00158 Sigma-54 interaction domain A3858_08275 PF02954 Bacterial regulatory protein, Fis family A3858_08280 PF02049 Flagellar hook-basal body complex protein FliE A3858_08285 PF08345 Flagellar M-ring protein C-terminal A3858_08285 PF01514 Secretory protein of YscJ/FliF family A3858_08290 PF14842 FliG N-terminal domain A3858_08290 PF01706 FliG C-terminal domain A3858_08290 PF14841 FliG middle domain A3858_08300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A3858_08300 PF18269 T3SS EscN ATPase C-terminal domain A3858_08320 PF02154 Flagellar motor switch protein FliM A3858_08320 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term A3858_08325 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term A3858_08335 PF00813 FliP family A3858_08340 PF01313 Bacterial export proteins, family 3 A3858_08345 PF01311 Bacterial export proteins, family 1 A3858_08350 PF01312 FlhB HrpN YscU SpaS Family A3858_08365 PF00309 Sigma-54 factor, Activator interacting domain (AID) A3858_08365 PF04552 Sigma-54, DNA binding domain A3858_08365 PF04963 Sigma-54 factor, core binding domain A3858_08370 PF00669 Bacterial flagellin N-terminal helical region A3858_08370 PF07196 Flagellin hook IN motif A3858_08370 PF00700 Bacterial flagellin C-terminal helical region A3858_08375 PF07195 Flagellar hook-associated protein 2 C-terminus A3858_08375 PF02465 Flagellar hook-associated protein 2 N-terminus A3858_08380 PF00158 Sigma-54 interaction domain A3858_08380 PF01590 GAF domain A3858_08395 PF00460 Flagella basal body rod protein A3858_08395 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A3858_08405 PF02119 Flagellar P-ring protein A3858_08410 PF02107 Flagellar L-ring protein A3858_08415 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A3858_08415 PF00460 Flagella basal body rod protein A3858_08420 PF00460 Flagella basal body rod protein A3858_08420 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A3858_08425 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A3858_08425 PF00460 Flagella basal body rod protein A3858_08425 PF07559 Flagellar basal body protein FlaE A3858_08430 PF13860 FlgD Ig-like domain A3858_08430 PF03963 Flagellar hook capping protein - N-terminal region A3858_08430 PF13861 FlgD Tudor-like domain A3858_08435 PF00460 Flagella basal body rod protein A3858_08435 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A3858_08450 PF17149 Periplasmic sensor domain found in signal transduction proteins A3858_08450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_08450 PF00512 His Kinase A (phospho-acceptor) domain A3858_08450 PF01627 Hpt domain A3858_08450 PF00072 Response regulator receiver domain A3858_08450 PF00672 HAMP domain A3858_08460 PF00072 Response regulator receiver domain A3858_08460 PF00196 Bacterial regulatory proteins, luxR family A3858_08465 PF05974 Domain of unknown function (DUF892) A3858_08470 PF13419 Haloacid dehalogenase-like hydrolase A3858_08475 PF04198 Putative sugar-binding domain A3858_08485 PF00528 Binding-protein-dependent transport system inner membrane component A3858_08490 PF00528 Binding-protein-dependent transport system inner membrane component A3858_08495 PF08402 TOBE domain A3858_08495 PF00005 ABC transporter A3858_08505 PF08125 Mannitol dehydrogenase C-terminal domain A3858_08505 PF01232 Mannitol dehydrogenase Rossmann domain A3858_08515 PF03480 Bacterial extracellular solute-binding protein, family 7 A3858_08520 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component A3858_08530 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 A3858_08535 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit A3858_08540 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit A3858_08540 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit A3858_08550 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit A3858_08550 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region A3858_08550 PF10531 SLBB domain A3858_08555 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region A3858_08555 PF00384 Molybdopterin oxidoreductase A3858_08555 PF04879 Molybdopterin oxidoreductase Fe4S4 domain A3858_08560 PF00146 NADH dehydrogenase A3858_08565 PF12838 4Fe-4S dicluster domain A3858_08570 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 A3858_08575 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L A3858_08580 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus A3858_08580 PF00361 Proton-conducting membrane transporter A3858_08585 PF00361 Proton-conducting membrane transporter A3858_08590 PF00361 Proton-conducting membrane transporter A3858_08595 PF13091 PLD-like domain A3858_08605 PF00034 Cytochrome c A3858_08615 PF00115 Cytochrome C and Quinol oxidase polypeptide I A3858_08625 PF01569 PAP2 superfamily A3858_08640 PF00196 Bacterial regulatory proteins, luxR family A3858_08640 PF03472 Autoinducer binding domain A3858_08645 PF00765 Autoinducer synthase A3858_08655 PF04349 Periplasmic glucan biosynthesis protein, MdoG A3858_08665 PF13632 Glycosyl transferase family group 2 A3858_08680 PF00005 ABC transporter A3858_08680 PF09383 NIL domain A3858_08685 PF00528 Binding-protein-dependent transport system inner membrane component A3858_08690 PF03180 NLPA lipoprotein A3858_08720 PF01250 Ribosomal protein S6 A3858_08725 PF01084 Ribosomal protein S18 A3858_08730 PF01281 Ribosomal protein L9, N-terminal domain A3858_08730 PF03948 Ribosomal protein L9, C-terminal domain A3858_08735 PF05697 Bacterial trigger factor protein (TF) A3858_08735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase A3858_08735 PF05698 Bacterial trigger factor protein (TF) C-terminus A3858_08750 PF01256 Carbohydrate kinase A3858_08750 PF03853 YjeF-related protein N-terminus A3858_08755 PF03853 YjeF-related protein N-terminus A3858_08760 PF00543 Nitrogen regulatory protein P-II A3858_08765 PF03951 Glutamine synthetase, beta-Grasp domain A3858_08765 PF00120 Glutamine synthetase, catalytic domain A3858_08770 PF13581 Histidine kinase-like ATPase domain A3858_08770 PF07568 Histidine kinase A3858_08770 PF13426 PAS domain A3858_08775 PF00072 Response regulator receiver domain A3858_08780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_08780 PF00672 HAMP domain A3858_08780 PF00512 His Kinase A (phospho-acceptor) domain A3858_08800 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase A3858_08800 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase A3858_08830 PF16363 GDP-mannose 4,6 dehydratase A3858_08835 PF16363 GDP-mannose 4,6 dehydratase A3858_08855 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) A3858_08880 PF00672 HAMP domain A3858_08880 PF00512 His Kinase A (phospho-acceptor) domain A3858_08880 PF13426 PAS domain A3858_08880 PF14827 Double sensory domain of two-component sensor kinase A3858_08880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_08890 PF00486 Transcriptional regulatory protein, C terminal A3858_08890 PF00072 Response regulator receiver domain A3858_08895 PF06114 IrrE N-terminal-like domain A3858_08895 PF01381 Helix-turn-helix A3858_08895 PF09856 Predicted transcriptional regulator (DUF2083) A3858_08900 PF01557 Fumarylacetoacetate (FAA) hydrolase family A3858_08910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A3858_08910 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain A3858_08915 PF00920 Dehydratase family A3858_08920 PF02913 FAD linked oxidases, C-terminal domain A3858_08920 PF01565 FAD binding domain A3858_08925 PF09084 NMT1/THI5 like A3858_08930 PF00528 Binding-protein-dependent transport system inner membrane component A3858_08935 PF00528 Binding-protein-dependent transport system inner membrane component A3858_08945 PF01979 Amidohydrolase family A3858_08950 PF07687 Peptidase dimerisation domain A3858_08950 PF01546 Peptidase family M20/M25/M40 A3858_08955 PF00440 Bacterial regulatory proteins, tetR family A3858_08955 PF08362 YcdC-like protein, C-terminal region A3858_08960 PF00440 Bacterial regulatory proteins, tetR family A3858_08960 PF08362 YcdC-like protein, C-terminal region A3858_08965 PF01180 Dihydroorotate dehydrogenase A3858_08975 PF07992 Pyridine nucleotide-disulphide oxidoreductase A3858_08975 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster A3858_08980 PF00364 Biotin-requiring enzyme A3858_08985 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A3858_08985 PF02785 Biotin carboxylase C-terminal domain A3858_08985 PF00289 Biotin carboxylase, N-terminal domain A3858_08990 PF03588 Leucyl/phenylalanyl-tRNA protein transferase A3858_09010 PF10431 C-terminal, D2-small domain, of ClpB protein A3858_09010 PF06689 ClpX C4-type zinc finger A3858_09010 PF07724 AAA domain (Cdc48 subfamily) A3858_09015 PF00574 Clp protease A3858_09030 PF00528 Binding-protein-dependent transport system inner membrane component A3858_09035 PF00005 ABC transporter A3858_09040 PF00188 Cysteine-rich secretory protein family A3858_09135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A3858_09135 PF00672 HAMP domain A3858_09135 PF02743 Cache domain A3858_09175 PF02797 Chalcone and stilbene synthases, C-terminal domain A3858_09175 PF00195 Chalcone and stilbene synthases, N-terminal domain A3858_09180 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family A3858_09185 PF07690 Major Facilitator Superfamily A3858_09195 PF00413 Matrixin A3858_09195 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) A3858_09195 PF08548 Peptidase M10 serralysin C terminal A3858_09205 PF00691 OmpA family A3858_09210 PF01618 MotA/TolQ/ExbB proton channel family A3858_09215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A3858_09215 PF02203 Tar ligand binding domain homologue A3858_09215 PF00672 HAMP domain A3858_09225 PF06463 Molybdenum Cofactor Synthesis C A3858_09225 PF04055 Radical SAM superfamily A3858_09230 PF01266 FAD dependent oxidoreductase A3858_09235 PF07687 Peptidase dimerisation domain A3858_09235 PF01546 Peptidase family M20/M25/M40 A3858_09245 PF02233 NAD(P) transhydrogenase beta subunit A3858_09250 PF01262 Alanine dehydrogenase/PNT, C-terminal domain A3858_09250 PF05222 Alanine dehydrogenase/PNT, N-terminal domain A3858_09250 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch A3858_09260 PF00266 Aminotransferase class-V A3858_09265 PF17969 L,D-transpeptidase C-terminal domain A3858_09265 PF03734 L,D-transpeptidase catalytic domain A3858_09270 PF07722 Peptidase C26 A3858_09275 PF00266 Aminotransferase class-V A3858_09280 PF00664 ABC transporter transmembrane region A3858_09280 PF00005 ABC transporter A3858_09290 PF09285 Elongation factor P, C-terminal A3858_09290 PF08207 Elongation factor P (EF-P) KOW-like domain A3858_09290 PF01132 Elongation factor P (EF-P) OB domain A3858_09315 PF01266 FAD dependent oxidoreductase A3858_09320 PF02780 Transketolase, C-terminal domain A3858_09320 PF02779 Transketolase, pyrimidine binding domain A3858_09320 PF13292 1-deoxy-D-xylulose-5-phosphate synthase A3858_09325 PF11511 Intrinsic membrane protein PufX A3858_09330 PF00124 Photosynthetic reaction centre protein A3858_09335 PF00124 Photosynthetic reaction centre protein A3858_09340 PF00556 Antenna complex alpha/beta subunit A3858_09345 PF00556 Antenna complex alpha/beta subunit A3858_09350 PF05398 PufQ cytochrome subunit A3858_09355 PF08369 Proto-chlorophyllide reductase 57 kD subunit A3858_09355 PF00148 Nitrogenase component 1 type Oxidoreductase A3858_09360 PF00148 Nitrogenase component 1 type Oxidoreductase A3858_09365 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family A3858_09375 PF16864 Dimerisation domain A3858_09375 PF00891 O-methyltransferase domain A3858_09380 PF00348 Polyprenyl synthetase A3858_09385 PF01593 Flavin containing amine oxidoreductase A3858_09395 PF03073 TspO/MBR family A3858_09405 PF01593 Flavin containing amine oxidoreductase A3858_09415 PF17863 AAA lid domain A3858_09415 PF01078 Magnesium chelatase, subunit ChlI A3858_09420 PF17863 AAA lid domain A3858_09430 PF00293 NUDIX domain A3858_09440 PF03209 PUCC protein A3858_09445 PF01040 UbiA prenyltransferase family A3858_09450 PF02830 V4R domain A3858_09455 PF02310 B12 binding domain A3858_09455 PF04055 Radical SAM superfamily A3858_09460 PF13188 PAS domain A3858_09460 PF02954 Bacterial regulatory protein, Fis family A3858_09460 PF13426 PAS domain A3858_09465 PF02310 B12 binding domain A3858_09470 PF07284 2-vinyl bacteriochlorophyllide hydratase (BCHF) A3858_09475 PF00148 Nitrogenase component 1 type Oxidoreductase A3858_09480 PF00148 Nitrogenase component 1 type Oxidoreductase A3858_09480 PF08369 Proto-chlorophyllide reductase 57 kD subunit A3858_09485 PF02514 CobN/Magnesium Chelatase A3858_09485 PF11965 Domain of unknown function (DUF3479) A3858_09490 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family A3858_09495 PF05175 Methyltransferase small domain A3858_09495 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus A3858_09500 PF03209 PUCC protein A3858_09505 PF05239 PRC-barrel domain A3858_09505 PF03967 Photosynthetic reaction centre, H-chain N-terminal region A3858_09510 PF03703 Bacterial PH domain A3858_09525 PF02915 Rubrerythrin A3858_09530 PF12291 Protein of unknown function (DUF3623) A3858_09540 PF00005 ABC transporter A3858_09545 PF12399 Branched-chain amino acid ATP-binding cassette transporter A3858_09545 PF00005 ABC transporter A3858_09550 PF02653 Branched-chain amino acid transport system / permease component A3858_09555 PF02653 Branched-chain amino acid transport system / permease component A3858_09565 PF02492 CobW/HypB/UreG, nucleotide-binding domain A3858_09570 PF01730 UreF A3858_09575 PF05194 UreE urease accessory protein, C-terminal domain A3858_09575 PF02814 UreE urease accessory protein, N-terminal domain A3858_09585 PF00449 Urease alpha-subunit, N-terminal domain A3858_09585 PF01979 Amidohydrolase family A3858_09600 PF00699 Urease beta subunit A3858_09605 PF00547 Urease, gamma subunit A3858_09610 PF01774 UreD urease accessory protein A3858_09620 PF00202 Aminotransferase class-III A3858_09625 PF00556 Antenna complex alpha/beta subunit A3858_09630 PF00556 Antenna complex alpha/beta subunit A3858_09635 PF03209 PUCC protein A3858_09640 PF00196 Bacterial regulatory proteins, luxR family A3858_09640 PF00072 Response regulator receiver domain A3858_09645 PF04055 Radical SAM superfamily A3858_09665 PF00092 von Willebrand factor type A domain A3858_09670 PF08406 CbbQ/NirQ/NorQ C-terminal A3858_09670 PF07728 AAA domain (dynein-related subfamily) A3858_09675 PF00115 Cytochrome C and Quinol oxidase polypeptide I A3858_09680 PF00034 Cytochrome c A3858_09705 PF00990 Diguanylate cyclase, GGDEF domain A3858_09720 PF07238 PilZ domain A3858_09720 PF03170 Bacterial cellulose synthase subunit A3858_09720 PF00535 Glycosyl transferase family 2 A3858_09730 PF03707 Bacterial signalling protein N terminal repeat A3858_09730 PF00990 Diguanylate cyclase, GGDEF domain A3858_09730 PF00563 EAL domain A3858_09740 PF00781 Diacylglycerol kinase catalytic domain A3858_09755 PF07969 Amidohydrolase family A3858_09765 PF02653 Branched-chain amino acid transport system / permease component A3858_09795 PF00005 ABC transporter A3858_09795 PF08402 TOBE domain A3858_09805 PF00248 Aldo/keto reductase family A3858_09810 PF00111 2Fe-2S iron-sulfur cluster binding domain A3858_09815 PF01336 OB-fold nucleic acid binding domain A3858_09815 PF02811 PHP domain A3858_09815 PF14579 Helix-hairpin-helix motif A3858_09815 PF17657 Bacterial DNA polymerase III alpha subunit finger domain A3858_09815 PF07733 Bacterial DNA polymerase III alpha NTPase domain A3858_09825 PF13180 PDZ domain A3858_09830 PF01145 SPFH domain / Band 7 family A3858_09835 PF01145 SPFH domain / Band 7 family A3858_09840 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A3858_09840 PF07992 Pyridine nucleotide-disulphide oxidoreductase A3858_09845 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) A3858_09850 PF03315 Serine dehydratase beta chain A3858_09850 PF03313 Serine dehydratase alpha chain A3858_09855 PF00892 EamA-like transporter family A3858_09875 PF00709 Adenylosuccinate synthetase A3858_09880 PF03840 Preprotein translocase SecG subunit A3858_09885 PF00117 Glutamine amidotransferase class-I A3858_09885 PF06418 CTP synthase N-terminus A3858_09900 PF00005 ABC transporter A3858_09905 PF00497 Bacterial extracellular solute-binding proteins, family 3 A3858_09910 PF00528 Binding-protein-dependent transport system inner membrane component A3858_09915 PF00528 Binding-protein-dependent transport system inner membrane component A3858_09920 PF00120 Glutamine synthetase, catalytic domain A3858_09925 PF00958 GMP synthase C terminal domain A3858_09925 PF02540 NAD synthase A3858_09925 PF00117 Glutamine amidotransferase class-I A3858_09930 PF00120 Glutamine synthetase, catalytic domain A3858_09935 PF01266 FAD dependent oxidoreductase A3858_09940 PF00202 Aminotransferase class-III A3858_09955 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus A3858_09955 PF00561 alpha/beta hydrolase fold A3858_09970 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain A3858_09970 PF03129 Anticodon binding domain A3858_09970 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A3858_09970 PF02824 TGS domain A3858_09975 PF00313 'Cold-shock' DNA-binding domain A3858_09990 PF00186 Dihydrofolate reductase A3858_09995 PF00303 Thymidylate synthase A3858_10000 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily A3858_10005 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region A3858_10005 PF01872 RibD C-terminal domain A3858_10010 PF03477 ATP cone domain A3858_10020 PF03979 Sigma-70 factor, region 1.1 A3858_10020 PF00140 Sigma-70 factor, region 1.2 A3858_10020 PF04546 Sigma-70, non-essential region A3858_10020 PF04542 Sigma-70 region 2 A3858_10020 PF04545 Sigma-70, region 4 A3858_10020 PF04539 Sigma-70 region 3 A3858_10025 PF01807 CHC2 zinc finger A3858_10025 PF08278 DNA primase DnaG DnaB-binding A3858_10025 PF13662 Toprim domain A3858_10025 PF10410 DnaB-helicase binding domain of primase A3858_10025 PF08275 DNA primase catalytic core, N-terminal domain A3858_10030 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase A3858_10030 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain A3858_10060 PF00742 Homoserine dehydrogenase A3858_10060 PF03447 Homoserine dehydrogenase, NAD binding domain A3858_10060 PF01842 ACT domain A3858_10065 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded A3858_10070 PF02272 DHHA1 domain A3858_10070 PF17768 RecJ OB domain A3858_10070 PF01368 DHH family A3858_10080 PF00990 Diguanylate cyclase, GGDEF domain A3858_10080 PF07694 5TMR of 5TMR-LYT A3858_10085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain A3858_10085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A3858_10100 PF03707 Bacterial signalling protein N terminal repeat A3858_10100 PF00990 Diguanylate cyclase, GGDEF domain A3858_10100 PF00563 EAL domain A3858_10110 PF13687 Domain of unknown function (DUF4153) A3858_10115 PF13419 Haloacid dehalogenase-like hydrolase A3858_10125 PF17158 Membrane-associated sensor, integral membrane domain A3858_10125 PF00990 Diguanylate cyclase, GGDEF domain A3858_10140 PF08281 Sigma-70, region 4 A3858_10140 PF04542 Sigma-70 region 2 A3858_10175 PF00248 Aldo/keto reductase family A3858_10185 PF09334 tRNA synthetases class I (M) A3858_10190 PF00999 Sodium/hydrogen exchanger family A3858_10205 PF00005 ABC transporter A3858_10215 PF03186 CobD/Cbib protein A3858_10220 PF00266 Aminotransferase class-V A3858_10235 PF01458 Uncharacterized protein family (UPF0051) A3858_10240 PF00005 ABC transporter A3858_10245 PF01906 Putative heavy-metal-binding A3858_10250 PF01458 Uncharacterized protein family (UPF0051) A3858_10255 PF00266 Aminotransferase class-V A3858_10260 PF02082 Transcriptional regulator A3858_10265 PF02129 X-Pro dipeptidyl-peptidase (S15 family) A3858_10275 PF00180 Isocitrate/isopropylmalate dehydrogenase A3858_10290 PF13230 Glutamine amidotransferases class-II A3858_10300 PF02272 DHHA1 domain A3858_10300 PF01411 tRNA synthetases class II (A) A3858_10300 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain A3858_10305 PF00154 recA bacterial DNA recombination protein A3858_10315 PF00072 Response regulator receiver domain A3858_10315 PF13188 PAS domain A3858_10315 PF08448 PAS fold A3858_10315 PF00512 His Kinase A (phospho-acceptor) domain A3858_10315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_10320 PF01189 16S rRNA methyltransferase RsmB/F A3858_10320 PF01029 NusB family A3858_10325 PF00455 DeoR C terminal sensor domain A3858_10325 PF08220 DeoR-like helix-turn-helix domain A3858_10335 PF09722 Protein of unknown function (DUF2384) A3858_10345 PF00873 AcrB/AcrD/AcrF family A3858_10350 PF13533 Biotin-lipoyl like A3858_10355 PF16916 Dimerisation domain of Zinc Transporter A3858_10355 PF01545 Cation efflux family A3858_10375 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase A3858_10380 PF02441 Flavoprotein A3858_10385 PF01266 FAD dependent oxidoreductase A3858_10405 PF13091 PLD-like domain A3858_10410 PF01322 Cytochrome C' A3858_10420 PF00596 Class II Aldolase and Adducin N-terminal domain A3858_10430 PF00152 tRNA synthetases class II (D, K and N) A3858_10435 PF09285 Elongation factor P, C-terminal A3858_10435 PF08207 Elongation factor P (EF-P) KOW-like domain A3858_10435 PF01132 Elongation factor P (EF-P) OB domain A3858_10440 PF01232 Mannitol dehydrogenase Rossmann domain A3858_10440 PF08125 Mannitol dehydrogenase C-terminal domain A3858_10450 PF04962 KduI/IolB family A3858_10455 PF07883 Cupin domain A3858_10460 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component A3858_10470 PF03480 Bacterial extracellular solute-binding protein, family 7 A3858_10475 PF02614 Glucuronate isomerase A3858_10480 PF00392 Bacterial regulatory proteins, gntR family A3858_10480 PF07729 FCD domain A3858_10490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_10490 PF00512 His Kinase A (phospho-acceptor) domain A3858_10495 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit A3858_10495 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal A3858_10500 PF00374 Nickel-dependent hydrogenase A3858_10505 PF01300 Telomere recombination A3858_10505 PF00708 Acylphosphatase A3858_10505 PF17788 HypF Kae1-like domain A3858_10505 PF07503 HypF finger A3858_10510 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal A3858_10510 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit A3858_10515 PF00374 Nickel-dependent hydrogenase A3858_10530 PF01750 Hydrogenase maturation protease A3858_10535 PF01455 HupF/HypC family A3858_10540 PF07449 Hydrogenase-1 expression protein HyaE A3858_10545 PF04809 HupH hydrogenase expression protein, C-terminal conserved region A3858_10550 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE A3858_10550 PF00301 Rubredoxin A3858_10560 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA A3858_10565 PF02492 CobW/HypB/UreG, nucleotide-binding domain A3858_10570 PF00158 Sigma-54 interaction domain A3858_10570 PF00072 Response regulator receiver domain A3858_10570 PF02954 Bacterial regulatory protein, Fis family A3858_10575 PF01455 HupF/HypC family A3858_10580 PF01924 Hydrogenase formation hypA family A3858_10585 PF02769 AIR synthase related protein, C-terminal domain A3858_10585 PF00586 AIR synthase related protein, N-terminal domain A3858_10595 PF00196 Bacterial regulatory proteins, luxR family A3858_10595 PF00072 Response regulator receiver domain A3858_10600 PF00989 PAS fold A3858_10600 PF00512 His Kinase A (phospho-acceptor) domain A3858_10600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_10610 PF01370 NAD dependent epimerase/dehydratase family A3858_10635 PF16363 GDP-mannose 4,6 dehydratase A3858_10640 PF01370 NAD dependent epimerase/dehydratase family A3858_10645 PF08240 Alcohol dehydrogenase GroES-like domain A3858_10645 PF00107 Zinc-binding dehydrogenase A3858_10650 PF02894 Oxidoreductase family, C-terminal alpha/beta domain A3858_10650 PF01408 Oxidoreductase family, NAD-binding Rossmann fold A3858_10655 PF02735 Ku70/Ku80 beta-barrel domain A3858_10660 PF02735 Ku70/Ku80 beta-barrel domain A3858_10665 PF03006 Haemolysin-III related A3858_10675 PF04963 Sigma-54 factor, core binding domain A3858_10675 PF00309 Sigma-54 factor, Activator interacting domain (AID) A3858_10675 PF04552 Sigma-54, DNA binding domain A3858_10680 PF03206 Nitrogen fixation protein NifW A3858_10685 PF00682 HMGL-like A3858_10690 PF00266 Aminotransferase class-V A3858_10695 PF01106 NifU-like domain A3858_10695 PF01592 NifU-like N terminal domain A3858_10700 PF01521 Iron-sulphur cluster biosynthesis A3858_10705 PF04891 NifQ A3858_10710 PF13237 4Fe-4S dicluster domain A3858_10715 PF03270 Protein of unknown function, DUF269 A3858_10720 PF02579 Dinitrogenase iron-molybdenum cofactor A3858_10725 PF00148 Nitrogenase component 1 type Oxidoreductase A3858_10730 PF00148 Nitrogenase component 1 type Oxidoreductase A3858_10735 PF00148 Nitrogenase component 1 type Oxidoreductase A3858_10735 PF11844 Domain of unknown function (DUF3364) A3858_10740 PF00148 Nitrogenase component 1 type Oxidoreductase A3858_10745 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family A3858_10755 PF06988 NifT/FixU protein A3858_10760 PF04319 NifZ domain A3858_10765 PF01816 Leucine rich repeat variant A3858_10765 PF05484 LRV protein FeS4 cluster A3858_10770 PF12838 4Fe-4S dicluster domain A3858_10775 PF02579 Dinitrogenase iron-molybdenum cofactor A3858_10775 PF04055 Radical SAM superfamily A3858_10780 PF13185 GAF domain A3858_10780 PF02954 Bacterial regulatory protein, Fis family A3858_10780 PF00158 Sigma-54 interaction domain A3858_10795 PF00768 D-alanyl-D-alanine carboxypeptidase A3858_10795 PF07943 Penicillin-binding protein 5, C-terminal domain A3858_10800 PF02223 Thymidylate kinase A3858_10810 PF00893 Small Multidrug Resistance protein A3858_10815 PF05496 Holliday junction DNA helicase RuvB P-loop domain A3858_10815 PF05491 RuvB C-terminal winged helix domain A3858_10815 PF17864 RuvB AAA lid domain A3858_10820 PF01435 Peptidase family M48 A3858_10825 PF07499 RuvA, C-terminal domain A3858_10825 PF01330 RuvA N terminal domain A3858_10830 PF02075 Crossover junction endodeoxyribonuclease RuvC A3858_10845 PF01625 Peptide methionine sulfoxide reductase A3858_10850 PF00270 DEAD/DEAH box helicase A3858_10850 PF18319 PriA DNA helicase Cys-rich region (CRR) domain A3858_10850 PF17764 3′ DNA-binding domain (3′BD) A3858_10850 PF18074 Primosomal protein N C-terminal domain A3858_10855 PF00923 Transaldolase/Fructose-6-phosphate aldolase A3858_10865 PF02899 Phage integrase, N-terminal SAM-like domain A3858_10865 PF00589 Phage integrase family A3858_10875 PF01066 CDP-alcohol phosphatidyltransferase A3858_10885 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain A3858_10885 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain A3858_10895 PF00133 tRNA synthetases class I (I, L, M and V) A3858_10895 PF08264 Anticodon-binding domain of tRNA A3858_10900 PF05128 Domain of unknown function (DUF697) A3858_10905 PF04317 YcjX-like family, DUF463 A3858_10910 PF01416 tRNA pseudouridine synthase A3858_10915 PF00929 Exonuclease A3858_10920 PF00072 Response regulator receiver domain A3858_10920 PF00486 Transcriptional regulatory protein, C terminal A3858_10930 PF00571 CBS domain A3858_10935 PF00474 Sodium:solute symporter family A3858_10945 PF05191 Adenylate kinase, active site lid A3858_10950 PF00501 AMP-binding enzyme A3858_10950 PF16177 Acetyl-coenzyme A synthetase N-terminus A3858_10950 PF13193 AMP-binding enzyme C-terminal domain A3858_10975 PF01921 tRNA synthetases class I (K) A3858_10980 PF02566 OsmC-like protein A3858_10985 PF01467 Cytidylyltransferase-like A3858_10990 PF00005 ABC transporter A3858_10990 PF12848 ABC transporter A3858_11010 PF00313 'Cold-shock' DNA-binding domain A3858_11015 PF07859 alpha/beta hydrolase fold A3858_11020 PF12411 Choline sulfatase enzyme C terminal A3858_11020 PF00884 Sulfatase A3858_11030 PF01432 Peptidase family M3 A3858_11035 PF00899 ThiF family A3858_11040 PF00692 dUTPase A3858_11045 PF02441 Flavoprotein A3858_11045 PF04127 DNA / pantothenate metabolism flavoprotein A3858_11055 PF04545 Sigma-70, region 4 A3858_11055 PF04542 Sigma-70 region 2 A3858_11055 PF00140 Sigma-70 factor, region 1.2 A3858_11060 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase A3858_11075 PF18019 HD domain A3858_11075 PF00270 DEAD/DEAH box helicase A3858_11075 PF00271 Helicase conserved C-terminal domain A3858_11080 PF02627 Carboxymuconolactone decarboxylase family A3858_11085 PF08281 Sigma-70, region 4 A3858_11085 PF04542 Sigma-70 region 2 A3858_11085 PF12680 SnoaL-like domain A3858_11100 PF01638 HxlR-like helix-turn-helix A3858_11110 PF14765 Polyketide synthase dehydratase A3858_11110 PF00550 Phosphopantetheine attachment site A3858_11110 PF09277 Erythronolide synthase, docking A3858_11110 PF16197 Ketoacyl-synthetase C-terminal extension A3858_11110 PF08240 Alcohol dehydrogenase GroES-like domain A3858_11110 PF08659 KR domain A3858_11110 PF02801 Beta-ketoacyl synthase, C-terminal domain A3858_11110 PF00698 Acyl transferase domain A3858_11110 PF00109 Beta-ketoacyl synthase, N-terminal domain A3858_11110 PF08990 Erythronolide synthase docking A3858_11135 PF00270 DEAD/DEAH box helicase A3858_11135 PF16124 RecQ zinc-binding A3858_11135 PF00570 HRDC domain A3858_11135 PF09382 RQC domain A3858_11135 PF00271 Helicase conserved C-terminal domain A3858_11145 PF03884 DNA gyrase inhibitor YacG A3858_11150 PF10150 Ribonuclease E/G family A3858_11155 PF02545 Maf-like protein A3858_11160 PF01176 Translation initiation factor 1A / IF-1 A3858_11165 PF00583 Acetyltransferase (GNAT) family A3858_11165 PF00795 Carbon-nitrogen hydrolase A3858_11180 PF01451 Low molecular weight phosphotyrosine protein phosphatase A3858_11185 PF06793 Uncharacterised protein family (UPF0262) A3858_11200 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) A3858_11215 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component A3858_11215 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component A3858_11235 PF01266 FAD dependent oxidoreductase A3858_11240 PF02538 Hydantoinase B/oxoprolinase A3858_11245 PF05378 Hydantoinase/oxoprolinase N-terminal region A3858_11245 PF01968 Hydantoinase/oxoprolinase A3858_11250 PF01381 Helix-turn-helix A3858_11250 PF08671 Anti-repressor SinI A3858_11260 PF07568 Histidine kinase A3858_11260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_11260 PF12282 Signal transduction histidine kinase A3858_11265 PF00528 Binding-protein-dependent transport system inner membrane component A3858_11270 PF00005 ABC transporter A3858_11275 PF09084 NMT1/THI5 like A3858_11280 PF08543 Phosphomethylpyrimidine kinase A3858_11285 PF02581 Thiamine monophosphate synthase A3858_11290 PF02110 Hydroxyethylthiazole kinase family A3858_11295 PF01464 Transglycosylase SLT domain A3858_11295 PF10145 Phage-related minor tail protein A3858_11295 PF01551 Peptidase family M23 A3858_11300 PF00459 Inositol monophosphatase family A3858_11305 PF16363 GDP-mannose 4,6 dehydratase A3858_11310 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain A3858_11310 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain A3858_11310 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain A3858_11315 PF00892 EamA-like transporter family A3858_11320 PF01709 Transcriptional regulator A3858_11325 PF02080 TrkA-C domain A3858_11325 PF03600 Citrate transporter A3858_11330 PF13277 YmdB-like protein A3858_11335 PF00271 Helicase conserved C-terminal domain A3858_11335 PF08494 DEAD/H associated A3858_11335 PF00270 DEAD/DEAH box helicase A3858_11350 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain A3858_11350 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain A3858_11360 PF01268 Formate--tetrahydrofolate ligase A3858_11370 PF01434 Peptidase family M41 A3858_11370 PF17862 AAA+ lid domain A3858_11370 PF00004 ATPase family associated with various cellular activities (AAA) A3858_11370 PF06480 FtsH Extracellular A3858_11375 PF01171 PP-loop family A3858_11385 PF00691 OmpA family A3858_11390 PF04052 TolB amino-terminal domain A3858_11390 PF07676 WD40-like Beta Propeller Repeat A3858_11400 PF02472 Biopolymer transport protein ExbD/TolR A3858_11405 PF01618 MotA/TolQ/ExbB proton channel family A3858_11410 PF03061 Thioesterase superfamily A3858_11420 PF09115 DNA polymerase III, delta subunit, C terminal A3858_11425 PF01026 TatD related DNase A3858_11450 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain A3858_11450 PF03900 Porphobilinogen deaminase, C-terminal domain A3858_11455 PF01208 Uroporphyrinogen decarboxylase (URO-D) A3858_11465 PF01218 Coproporphyrinogen III oxidase A3858_11480 PF08468 Methyltransferase small domain N-terminal A3858_11480 PF05175 Methyltransferase small domain A3858_11485 PF02617 ATP-dependent Clp protease adaptor protein ClpS A3858_11495 PF00768 D-alanyl-D-alanine carboxypeptidase A3858_11495 PF07943 Penicillin-binding protein 5, C-terminal domain A3858_11500 PF03597 Cytochrome oxidase maturation protein cbb3-type A3858_11505 PF00403 Heavy-metal-associated domain A3858_11515 PF13746 4Fe-4S dicluster domain A3858_11515 PF12801 4Fe-4S binding domain A3858_11515 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase A3858_11520 PF13442 Cytochrome C oxidase, cbb3-type, subunit III A3858_11520 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP A3858_11535 PF00115 Cytochrome C and Quinol oxidase polypeptide I A3858_11545 PF00027 Cyclic nucleotide-binding domain A3858_11545 PF13545 Crp-like helix-turn-helix domain A3858_11550 PF04055 Radical SAM superfamily A3858_11555 PF00534 Glycosyl transferases group 1 A3858_11555 PF13439 Glycosyltransferase Family 4 A3858_11560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A3858_11560 PF00005 ABC transporter A3858_11565 PF12911 N-terminal TM domain of oligopeptide transport permease C A3858_11565 PF00528 Binding-protein-dependent transport system inner membrane component A3858_11570 PF00528 Binding-protein-dependent transport system inner membrane component A3858_11580 PF00034 Cytochrome c A3858_11585 PF00800 Prephenate dehydratase A3858_11585 PF01817 Chorismate mutase type II A3858_11585 PF01842 ACT domain A3858_11595 PF00293 NUDIX domain A3858_11595 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain A3858_11595 PF09297 NADH pyrophosphatase zinc ribbon domain A3858_11610 PF12170 DNA polymerase III tau subunit V interacting with alpha A3858_11610 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding A3858_11610 PF12169 DNA polymerase III subunits gamma and tau domain III A3858_11615 PF02575 YbaB/EbfC DNA-binding family A3858_11620 PF02132 RecR protein A3858_11620 PF13662 Toprim domain A3858_11635 PF00445 Ribonuclease T2 family A3858_11650 PF01165 Ribosomal protein S21 A3858_11655 PF02666 Phosphatidylserine decarboxylase A3858_11660 PF01066 CDP-alcohol phosphatidyltransferase A3858_11665 PF08241 Methyltransferase domain A3858_11670 PF01037 Lrp/AsnC ligand binding domain A3858_11675 PF05222 Alanine dehydrogenase/PNT, N-terminal domain A3858_11675 PF01262 Alanine dehydrogenase/PNT, C-terminal domain A3858_11680 PF01741 Large-conductance mechanosensitive channel, MscL A3858_11685 PF08534 Redoxin A3858_11690 PF00206 Lyase A3858_11690 PF14698 Argininosuccinate lyase C-terminal A3858_11710 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain A3858_11710 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain A3858_11725 PF00005 ABC transporter A3858_11745 PF03205 Molybdopterin guanine dinucleotide synthesis protein B A3858_11750 PF12804 MobA-like NTP transferase domain A3858_11780 PF12806 Acetyl-CoA dehydrogenase C-terminal like A3858_11780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A3858_11780 PF02770 Acyl-CoA dehydrogenase, middle domain A3858_11780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A3858_11785 PF01300 Telomere recombination A3858_11785 PF03481 Putative GTP-binding controlling metal-binding A3858_11790 PF03352 Methyladenine glycosylase A3858_11795 PF00108 Thiolase, N-terminal domain A3858_11795 PF02803 Thiolase, C-terminal domain A3858_11800 PF00106 short chain dehydrogenase A3858_11805 PF05175 Methyltransferase small domain A3858_11815 PF00348 Polyprenyl synthetase A3858_11850 PF01029 NusB family A3858_11855 PF00885 6,7-dimethyl-8-ribityllumazine synthase A3858_11860 PF00925 GTP cyclohydrolase II A3858_11860 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase A3858_11875 PF00677 Lumazine binding domain A3858_11880 PF10531 SLBB domain A3858_11880 PF18412 Outer-membrane lipoprotein Wza C-terminal domain A3858_11880 PF02563 Polysaccharide biosynthesis/export protein A3858_11885 PF12802 MarR family A3858_11895 PF00717 Peptidase S24-like A3858_11895 PF01381 Helix-turn-helix A3858_11905 PF01554 MatE A3858_11915 PF03976 Polyphosphate kinase 2 (PPK2) A3858_11920 PF00561 alpha/beta hydrolase fold A3858_11930 PF01751 Toprim domain A3858_11930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_11930 PF00204 DNA gyrase B A3858_11930 PF00986 DNA gyrase B subunit, carboxyl terminus A3858_11935 PF03786 D-mannonate dehydratase (UxuA) A3858_11940 PF16921 Tex protein YqgF-like domain A3858_11940 PF00575 S1 RNA binding domain A3858_11940 PF17674 HHH domain A3858_11940 PF09371 Tex-like protein N-terminal domain A3858_11950 PF00005 ABC transporter A3858_11955 PF12704 MacB-like periplasmic core domain A3858_11955 PF02687 FtsX-like permease family A3858_11960 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A3858_11960 PF03129 Anticodon binding domain A3858_11965 PF01594 AI-2E family transporter A3858_11975 PF13090 Polyphosphate kinase C-terminal domain 2 A3858_11975 PF17941 Polyphosphate kinase C-terminal domain 1 A3858_11975 PF13089 Polyphosphate kinase N-terminal domain A3858_11975 PF02503 Polyphosphate kinase middle domain A3858_11980 PF02541 Ppx/GppA phosphatase family A3858_11990 PF00583 Acetyltransferase (GNAT) family A3858_11995 PF00226 DnaJ domain A3858_11995 PF05099 Tellurite resistance protein TerB A3858_12015 PF00155 Aminotransferase class I and II A3858_12020 PF04055 Radical SAM superfamily A3858_12020 PF13186 Iron-sulfur cluster-binding domain A3858_12025 PF05402 Coenzyme PQQ synthesis protein D (PqqD) A3858_12030 PF03070 TENA/THI-4/PQQC family A3858_12035 PF12706 Beta-lactamase superfamily domain A3858_12040 PF08042 PqqA family A3858_12045 PF03466 LysR substrate binding domain A3858_12045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_12055 PF07685 CobB/CobQ-like glutamine amidotransferase domain A3858_12055 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain A3858_12065 PF00749 tRNA synthetases class I (E and Q), catalytic domain A3858_12075 PF00753 Metallo-beta-lactamase superfamily A3858_12080 PF02594 Uncharacterised ACR, YggU family COG1872 A3858_12085 PF00850 Histone deacetylase domain A3858_12090 PF01244 Membrane dipeptidase (Peptidase family M19) A3858_12095 PF00005 ABC transporter A3858_12095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A3858_12100 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A3858_12100 PF00005 ABC transporter A3858_12110 PF00528 Binding-protein-dependent transport system inner membrane component A3858_12115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A3858_12150 PF00152 tRNA synthetases class II (D, K and N) A3858_12150 PF01336 OB-fold nucleic acid binding domain A3858_12150 PF02938 GAD domain A3858_12160 PF00425 chorismate binding enzyme A3858_12160 PF04715 Anthranilate synthase component I, N terminal region A3858_12165 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain A3858_12165 PF02142 MGS-like domain A3858_12165 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A3858_12170 PF00270 DEAD/DEAH box helicase A3858_12170 PF00271 Helicase conserved C-terminal domain A3858_12185 PF12697 Alpha/beta hydrolase family A3858_12195 PF00464 Serine hydroxymethyltransferase A3858_12200 PF01513 ATP-NAD kinase A3858_12205 PF01195 Peptidyl-tRNA hydrolase A3858_12215 PF14693 Ribosomal protein TL5, C-terminal domain A3858_12215 PF01386 Ribosomal L25p family A3858_12225 PF01070 FMN-dependent dehydrogenase A3858_12235 PF00290 Tryptophan synthase alpha chain A3858_12240 PF06071 Protein of unknown function (DUF933) A3858_12240 PF01926 50S ribosome-binding GTPase A3858_12245 PF00483 Nucleotidyl transferase A3858_12245 PF01050 Mannose-6-phosphate isomerase A3858_12250 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain A3858_12250 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I A3858_12250 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III A3858_12250 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II A3858_12260 PF01593 Flavin containing amine oxidoreductase A3858_12280 PF00133 tRNA synthetases class I (I, L, M and V) A3858_12280 PF08264 Anticodon-binding domain of tRNA A3858_12280 PF09334 tRNA synthetases class I (M) A3858_12280 PF13603 Leucyl-tRNA synthetase, Domain 2 A3858_12285 PF12100 Domain of unknown function (DUF3576) A3858_12300 PF01168 Alanine racemase, N-terminal domain A3858_12310 PF00925 GTP cyclohydrolase II A3858_12315 PF00486 Transcriptional regulatory protein, C terminal A3858_12315 PF00072 Response regulator receiver domain A3858_12325 PF00440 Bacterial regulatory proteins, tetR family A3858_12325 PF18665 Tetracyclin repressor-like, C-terminal domain A3858_12335 PF03547 Membrane transport protein A3858_12340 PF00756 Putative esterase A3858_12345 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 A3858_12350 PF02423 Ornithine cyclodeaminase/mu-crystallin family A3858_12365 PF13649 Methyltransferase domain A3858_12375 PF00892 EamA-like transporter family A3858_12380 PF00180 Isocitrate/isopropylmalate dehydrogenase A3858_12395 PF00694 Aconitase C-terminal domain A3858_12405 PF00330 Aconitase family (aconitate hydratase) A3858_12420 PF02590 Predicted SPOUT methyltransferase A3858_12425 PF00075 RNase H A3858_12445 PF00155 Aminotransferase class I and II A3858_12450 PF01327 Polypeptide deformylase A3858_12455 PF01327 Polypeptide deformylase A3858_12460 PF01327 Polypeptide deformylase A3858_12465 PF00551 Formyl transferase A3858_12465 PF02911 Formyl transferase, C-terminal domain A3858_12470 PF02463 RecF/RecN/SMC N terminal domain A3858_12485 PF01266 FAD dependent oxidoreductase A3858_12485 PF05430 S-adenosyl-L-methionine-dependent methyltransferase A3858_12495 PF01464 Transglycosylase SLT domain A3858_12495 PF14718 Soluble lytic murein transglycosylase L domain A3858_12500 PF00701 Dihydrodipicolinate synthetase family A3858_12505 PF01668 SmpB protein A3858_12510 PF00581 Rhodanese-like domain A3858_12515 PF00155 Aminotransferase class I and II A3858_12520 PF00909 Ammonium Transporter Family A3858_12525 PF00543 Nitrogen regulatory protein P-II A3858_12540 PF04333 MlaA lipoprotein A3858_12545 PF00664 ABC transporter transmembrane region A3858_12545 PF00005 ABC transporter A3858_12550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A3858_12550 PF00529 HlyD membrane-fusion protein of T1SS A3858_12560 PF03009 Glycerophosphoryl diester phosphodiesterase family A3858_12575 PF01329 Pterin 4 alpha carbinolamine dehydratase A3858_12580 PF08534 Redoxin A3858_12585 PF07992 Pyridine nucleotide-disulphide oxidoreductase A3858_12585 PF14759 Reductase C-terminal A3858_12595 PF13419 Haloacid dehalogenase-like hydrolase A3858_12605 PF01297 Zinc-uptake complex component A periplasmic A3858_12610 PF00005 ABC transporter A3858_12615 PF00950 ABC 3 transport family A3858_12620 PF00950 ABC 3 transport family A3858_12625 PF00196 Bacterial regulatory proteins, luxR family A3858_12625 PF00072 Response regulator receiver domain A3858_12630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_12630 PF00512 His Kinase A (phospho-acceptor) domain A3858_12630 PF00989 PAS fold A3858_12635 PF03480 Bacterial extracellular solute-binding protein, family 7 A3858_12640 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component A3858_12645 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component A3858_12650 PF00378 Enoyl-CoA hydratase/isomerase A3858_12665 PF01523 Putative modulator of DNA gyrase A3858_12670 PF00459 Inositol monophosphatase family A3858_12685 PF01618 MotA/TolQ/ExbB proton channel family A3858_12690 PF02472 Biopolymer transport protein ExbD/TolR A3858_12715 PF04972 BON domain A3858_12715 PF00691 OmpA family A3858_12720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_12720 PF03466 LysR substrate binding domain A3858_12730 PF17848 Acetyl-coA carboxylase zinc finger domain A3858_12730 PF01039 Carboxyl transferase domain A3858_12735 PF08245 Mur ligase middle domain A3858_12735 PF02875 Mur ligase family, glutamate ligase domain A3858_12740 PF00293 NUDIX domain A3858_12745 PF03572 Peptidase family S41 A3858_12745 PF13180 PDZ domain A3858_12755 PF01676 Metalloenzyme superfamily A3858_12755 PF06415 BPG-independent PGAM N-terminus (iPGM_N) A3858_12760 PF00919 Uncharacterized protein family UPF0004 A3858_12760 PF04055 Radical SAM superfamily A3858_12765 PF01678 Diaminopimelate epimerase A3858_12775 PF16657 Maltogenic Amylase, C-terminal domain A3858_12775 PF00128 Alpha amylase, catalytic domain A3858_12795 PF00005 ABC transporter A3858_12805 PF00202 Aminotransferase class-III A3858_12810 PF00551 Formyl transferase A3858_12835 PF00982 Glycosyltransferase family 20 A3858_12840 PF02358 Trehalose-phosphatase A3858_12845 PF01546 Peptidase family M20/M25/M40 A3858_12850 PF01841 Transglutaminase-like superfamily A3858_12850 PF08379 Bacterial transglutaminase-like N-terminal region A3858_12855 PF14403 Circularly permuted ATP-grasp type 2 A3858_12855 PF04168 A predicted alpha-helical domain with a conserved ER motif. A3858_12865 PF02872 5'-nucleotidase, C-terminal domain A3858_12865 PF00149 Calcineurin-like phosphoesterase A3858_12875 PF01180 Dihydroorotate dehydrogenase A3858_12900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A3858_12900 PF07992 Pyridine nucleotide-disulphide oxidoreductase A3858_12910 PF00364 Biotin-requiring enzyme A3858_12910 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) A3858_12910 PF02817 e3 binding domain A3858_12915 PF16870 2-oxoglutarate dehydrogenase C-terminal A3858_12915 PF16078 2-oxoglutarate dehydrogenase N-terminus A3858_12915 PF00676 Dehydrogenase E1 component A3858_12915 PF02779 Transketolase, pyrimidine binding domain A3858_12920 PF00549 CoA-ligase A3858_12920 PF02629 CoA binding domain A3858_12925 PF08442 ATP-grasp domain A3858_12925 PF00549 CoA-ligase A3858_12930 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain A3858_12930 PF00056 lactate/malate dehydrogenase, NAD binding domain A3858_12940 PF03328 HpcH/HpaI aldolase/citrate lyase family A3858_12955 PF01575 MaoC like domain A3858_12960 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit A3858_12970 PF02910 Fumarate reductase flavoprotein C-term A3858_12970 PF00890 FAD binding domain A3858_12985 PF13237 4Fe-4S dicluster domain A3858_12985 PF13085 2Fe-2S iron-sulfur cluster binding domain A3858_12995 PF07729 FCD domain A3858_12995 PF00392 Bacterial regulatory proteins, gntR family A3858_13020 PF13382 Adenine deaminase C-terminal domain A3858_13020 PF01979 Amidohydrolase family A3858_13035 PF00005 ABC transporter A3858_13040 PF02653 Branched-chain amino acid transport system / permease component A3858_13045 PF13407 Periplasmic binding protein domain A3858_13055 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter A3858_13055 PF13244 Domain of unknown function (DUF4040) A3858_13055 PF00361 Proton-conducting membrane transporter A3858_13055 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus A3858_13060 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L A3858_13065 PF00361 Proton-conducting membrane transporter A3858_13070 PF01899 Na+/H+ ion antiporter subunit A3858_13075 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) A3858_13080 PF03334 Na+/H+ antiporter subunit A3858_13085 PF03600 Citrate transporter A3858_13090 PF02622 Uncharacterized ACR, COG1678 A3858_13100 PF03167 Uracil DNA glycosylase superfamily A3858_13105 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain A3858_13105 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain A3858_13110 PF01979 Amidohydrolase family A3858_13115 PF02660 Glycerol-3-phosphate acyltransferase A3858_13135 PF01040 UbiA prenyltransferase family A3858_13155 PF00171 Aldehyde dehydrogenase family A3858_13160 PF01595 Cyclin M transmembrane N-terminal domain A3858_13160 PF00571 CBS domain A3858_13160 PF03471 Transporter associated domain A3858_13170 PF12450 von Willebrand factor A3858_13170 PF12034 Domain of unknown function (DUF3520) A3858_13170 PF00092 von Willebrand factor type A domain A3858_13175 PF00011 Hsp20/alpha crystallin family A3858_13185 PF13183 4Fe-4S dicluster domain A3858_13185 PF02754 Cysteine-rich domain A3858_13190 PF01565 FAD binding domain A3858_13195 PF01565 FAD binding domain A3858_13195 PF02913 FAD linked oxidases, C-terminal domain A3858_13220 PF07726 ATPase family associated with various cellular activities (AAA) A3858_13220 PF17863 AAA lid domain A3858_13240 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain A3858_13240 PF01612 3'-5' exonuclease A3858_13240 PF00476 DNA polymerase family A A3858_13240 PF01367 5'-3' exonuclease, C-terminal SAM fold A3858_13245 PF01230 HIT domain A3858_13250 PF00294 pfkB family carbohydrate kinase A3858_13255 PF00730 HhH-GPD superfamily base excision DNA repair protein A3858_13255 PF10576 Iron-sulfur binding domain of endonuclease III A3858_13255 PF00633 Helix-hairpin-helix motif A3858_13260 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain A3858_13260 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain A3858_13265 PF00691 OmpA family A3858_13265 PF13488 Glycine zipper A3858_13270 PF07729 FCD domain A3858_13270 PF00392 Bacterial regulatory proteins, gntR family A3858_13275 PF00430 ATP synthase B/B' CF(0) A3858_13280 PF00430 ATP synthase B/B' CF(0) A3858_13285 PF00137 ATP synthase subunit C A3858_13290 PF00119 ATP synthase A chain A3858_13295 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter A3858_13300 PF01022 Bacterial regulatory protein, arsR family A3858_13305 PF00501 AMP-binding enzyme A3858_13305 PF13193 AMP-binding enzyme C-terminal domain A3858_13310 PF13614 AAA domain A3858_13315 PF01197 Ribosomal protein L31 A3858_13320 PF01245 Ribosomal protein L19 A3858_13325 PF01746 tRNA (Guanine-1)-methyltransferase A3858_13335 PF01782 RimM N-terminal domain A3858_13335 PF05239 PRC-barrel domain A3858_13340 PF00886 Ribosomal protein S16 A3858_13365 PF00448 SRP54-type protein, GTPase domain A3858_13365 PF02881 SRP54-type protein, helical bundle domain A3858_13365 PF02978 Signal peptide binding domain A3858_13385 PF00512 His Kinase A (phospho-acceptor) domain A3858_13385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_13385 PF00989 PAS fold A3858_13390 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A3858_13390 PF07992 Pyridine nucleotide-disulphide oxidoreductase A3858_13400 PF00468 Ribosomal protein L34 A3858_13405 PF00825 Ribonuclease P A3858_13410 PF01809 Putative membrane protein insertion efficiency factor A3858_13415 PF01171 PP-loop family A3858_13420 PF00990 Diguanylate cyclase, GGDEF domain A3858_13420 PF00563 EAL domain A3858_13420 PF03707 Bacterial signalling protein N terminal repeat A3858_13425 PF02096 60Kd inner membrane protein A3858_13425 PF14849 YidC periplasmic domain A3858_13435 PF01926 50S ribosome-binding GTPase A3858_13445 PF00696 Amino acid kinase family A3858_13460 PF02391 MoaE protein A3858_13470 PF01066 CDP-alcohol phosphatidyltransferase A3858_13475 PF08459 UvrC Helix-hairpin-helix N-terminal A3858_13475 PF01541 GIY-YIG catalytic domain A3858_13475 PF12826 Helix-hairpin-helix motif A3858_13475 PF02151 UvrB/uvrC motif A3858_13490 PF01343 Peptidase family S49 A3858_13490 PF06965 Na+/H+ antiporter 1 A3858_13495 PF03466 LysR substrate binding domain A3858_13495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_13505 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region A3858_13505 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit A3858_13505 PF00037 4Fe-4S binding domain A3858_13510 PF00384 Molybdopterin oxidoreductase A3858_13510 PF01568 Molydopterin dinucleotide binding domain A3858_13510 PF12838 4Fe-4S dicluster domain A3858_13510 PF04879 Molybdopterin oxidoreductase Fe4S4 domain A3858_13510 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region A3858_13515 PF02634 FdhD/NarQ family A3858_13530 PF13439 Glycosyltransferase Family 4 A3858_13530 PF00534 Glycosyl transferases group 1 A3858_13535 PF00486 Transcriptional regulatory protein, C terminal A3858_13535 PF00072 Response regulator receiver domain A3858_13550 PF00106 short chain dehydrogenase A3858_13575 PF04545 Sigma-70, region 4 A3858_13575 PF04542 Sigma-70 region 2 A3858_13580 PF12973 ChrR Cupin-like domain A3858_13585 PF02646 RmuC family A3858_13590 PF08676 MutL C terminal dimerisation domain A3858_13590 PF01119 DNA mismatch repair protein, C-terminal domain A3858_13595 PF05193 Peptidase M16 inactive domain A3858_13600 PF00675 Insulinase (Peptidase family M16) A3858_13600 PF05193 Peptidase M16 inactive domain A3858_13610 PF01252 Signal peptidase (SPase) II A3858_13615 PF01808 AICARFT/IMPCHase bienzyme A3858_13615 PF02142 MGS-like domain A3858_13625 PF01029 NusB family A3858_13625 PF01189 16S rRNA methyltransferase RsmB/F A3858_13635 PF05173 Dihydrodipicolinate reductase, C-terminus A3858_13635 PF01113 Dihydrodipicolinate reductase, N-terminus A3858_13640 PF02033 Ribosome-binding factor A A3858_13650 PF01509 TruB family pseudouridylate synthase (N terminal domain) A3858_13650 PF16198 tRNA pseudouridylate synthase B C-terminal domain A3858_13655 PF00291 Pyridoxal-phosphate dependent enzyme A3858_13665 PF00312 Ribosomal protein S15 A3858_13670 PF03725 3' exoribonuclease family, domain 2 A3858_13670 PF00575 S1 RNA binding domain A3858_13670 PF01138 3' exoribonuclease family, domain 1 A3858_13670 PF00013 KH domain A3858_13670 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain A3858_13690 PF13439 Glycosyltransferase Family 4 A3858_13705 PF00005 ABC transporter A3858_13705 PF00664 ABC transporter transmembrane region A3858_13710 PF00529 HlyD membrane-fusion protein of T1SS A3858_13715 PF00132 Bacterial transferase hexapeptide (six repeats) A3858_13715 PF14602 Hexapeptide repeat of succinyl-transferase A3858_13715 PF12464 Maltose acetyltransferase A3858_13725 PF02811 PHP domain A3858_13725 PF01336 OB-fold nucleic acid binding domain A3858_13725 PF07733 Bacterial DNA polymerase III alpha NTPase domain A3858_13725 PF17657 Bacterial DNA polymerase III alpha subunit finger domain A3858_13725 PF14579 Helix-hairpin-helix motif A3858_13730 PF13406 Transglycosylase SLT domain A3858_13735 PF00773 RNB domain A3858_13735 PF08206 Ribonuclease B OB domain A3858_13735 PF08461 Ribonuclease R winged-helix domain A3858_13735 PF17876 Cold shock domain A3858_13735 PF00575 S1 RNA binding domain A3858_13745 PF07687 Peptidase dimerisation domain A3858_13745 PF01546 Peptidase family M20/M25/M40 A3858_13755 PF04239 Protein of unknown function (DUF421) A3858_13760 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal A3858_13760 PF14602 Hexapeptide repeat of succinyl-transferase A3858_13760 PF00132 Bacterial transferase hexapeptide (six repeats) A3858_13775 PF02780 Transketolase, C-terminal domain A3858_13775 PF02779 Transketolase, pyrimidine binding domain A3858_13775 PF13292 1-deoxy-D-xylulose-5-phosphate synthase A3858_13780 PF00348 Polyprenyl synthetase A3858_13785 PF02609 Exonuclease VII small subunit A3858_13790 PF00850 Histone deacetylase domain A3858_13795 PF00072 Response regulator receiver domain A3858_13795 PF00486 Transcriptional regulatory protein, C terminal A3858_13800 PF12802 MarR family A3858_13805 PF01063 Amino-transferase class IV A3858_13815 PF08331 Domain of unknown function (DUF1730) A3858_13820 PF00043 Glutathione S-transferase, C-terminal domain A3858_13820 PF13417 Glutathione S-transferase, N-terminal domain A3858_13825 PF00912 Transglycosylase A3858_13830 PF01645 Conserved region in glutamate synthase A3858_13830 PF00310 Glutamine amidotransferases class-II A3858_13830 PF01493 GXGXG motif A3858_13830 PF04898 Glutamate synthase central domain A3858_13845 PF07992 Pyridine nucleotide-disulphide oxidoreductase A3858_13845 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster A3858_13850 PF02673 Bacitracin resistance protein BacA A3858_13870 PF00571 CBS domain A3858_13870 PF01380 SIS domain A3858_13885 PF00005 ABC transporter A3858_13890 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein A3858_13890 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus A3858_13895 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 A3858_13900 PF00483 Nucleotidyl transferase A3858_13905 PF02348 Cytidylyltransferase A3858_13910 PF00459 Inositol monophosphatase family A3858_13915 PF02576 RimP N-terminal domain A3858_13915 PF17384 RimP C-terminal SH3 domain A3858_13920 PF13184 NusA-like KH domain A3858_13920 PF00575 S1 RNA binding domain A3858_13920 PF08529 NusA N-terminal domain A3858_13930 PF04760 Translation initiation factor IF-2, N-terminal region A3858_13930 PF00009 Elongation factor Tu GTP binding domain A3858_13930 PF11987 Translation-initiation factor 2 A3858_13930 PF08364 Bacterial translation initiation factor IF-2 associated region A3858_13935 PF00293 NUDIX domain A3858_13940 PF01960 ArgJ family A3858_13945 PF05698 Bacterial trigger factor protein (TF) C-terminus A3858_13950 PF02810 SEC-C motif A3858_13950 PF07516 SecA Wing and Scaffold domain A3858_13950 PF07517 SecA DEAD-like domain A3858_13950 PF01043 SecA preprotein cross-linking domain A3858_13960 PF04002 RadC-like JAB domain A3858_13965 PF00226 DnaJ domain A3858_13965 PF01556 DnaJ C terminal domain A3858_13965 PF00684 DnaJ central domain A3858_13970 PF00012 Hsp70 protein A3858_13975 PF00561 alpha/beta hydrolase fold A3858_13990 PF00370 FGGY family of carbohydrate kinases, N-terminal domain A3858_13990 PF02782 FGGY family of carbohydrate kinases, C-terminal domain A3858_13995 PF00005 ABC transporter A3858_14000 PF02653 Branched-chain amino acid transport system / permease component A3858_14005 PF13407 Periplasmic binding protein domain A3858_14010 PF00480 ROK family A3858_14015 PF17243 POTRA domain TamA domain 1 A3858_14015 PF07244 Surface antigen variable number repeat A3858_14015 PF01103 Surface antigen A3858_14020 PF04357 TamB, inner membrane protein subunit of TAM complex A3858_14025 PF03631 Virulence factor BrkB A3858_14040 PF06082 Exopolysaccharide biosynthesis protein YbjH A3858_14045 PF02719 Polysaccharide biosynthesis protein A3858_14050 PF02397 Bacterial sugar transferase A3858_14065 PF00795 Carbon-nitrogen hydrolase A3858_14070 PF00462 Glutaredoxin A3858_14075 PF00156 Phosphoribosyl transferase domain A3858_14080 PF13649 Methyltransferase domain A3858_14085 PF00762 Ferrochelatase A3858_14090 PF03734 L,D-transpeptidase catalytic domain A3858_14100 PF03734 L,D-transpeptidase catalytic domain A3858_14105 PF05958 tRNA (Uracil-5-)-methyltransferase A3858_14110 PF00664 ABC transporter transmembrane region A3858_14110 PF00005 ABC transporter A3858_14115 PF00005 ABC transporter A3858_14115 PF00664 ABC transporter transmembrane region A3858_14120 PF12627 Probable RNA and SrmB- binding site of polymerase A A3858_14120 PF01743 Poly A polymerase head domain A3858_14120 PF13735 tRNA nucleotidyltransferase domain 2 putative A3858_14125 PF00293 NUDIX domain A3858_14130 PF01430 Hsp33 protein A3858_14135 PF00293 NUDIX domain A3858_14140 PF00486 Transcriptional regulatory protein, C terminal A3858_14140 PF00072 Response regulator receiver domain A3858_14155 PF00764 Arginosuccinate synthase A3858_14170 PF01063 Amino-transferase class IV A3858_14175 PF01467 Cytidylyltransferase-like A3858_14175 PF00294 pfkB family carbohydrate kinase A3858_14180 PF03949 Malic enzyme, NAD binding domain A3858_14180 PF01515 Phosphate acetyl/butaryl transferase A3858_14180 PF00390 Malic enzyme, N-terminal domain A3858_14185 PF00488 MutS domain V A3858_14185 PF01624 MutS domain I A3858_14185 PF05188 MutS domain II A3858_14185 PF05190 MutS family domain IV A3858_14185 PF05192 MutS domain III A3858_14190 PF01025 GrpE A3858_14195 PF01628 HrcA protein C terminal domain A3858_14200 PF03725 3' exoribonuclease family, domain 2 A3858_14200 PF01138 3' exoribonuclease family, domain 1 A3858_14205 PF01725 Ham1 family A3858_14210 PF01042 Endoribonuclease L-PSP A3858_14215 PF04055 Radical SAM superfamily A3858_14215 PF06969 HemN C-terminal domain A3858_14220 PF04304 Protein of unknown function (DUF454) A3858_14225 PF02195 ParB-like nuclease domain A3858_14225 PF17762 HTH domain found in ParB protein A3858_14230 PF13614 AAA domain A3858_14235 PF02527 rRNA small subunit methyltransferase G A3858_14240 PF13932 GidA associated domain A3858_14240 PF01134 Glucose inhibited division protein A A3858_14245 PF10396 GTP-binding protein TrmE N-terminus A3858_14245 PF12631 MnmE helical domain A3858_14245 PF01926 50S ribosome-binding GTPase A3858_14250 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A3858_14250 PF07498 Rho termination factor, N-terminal domain A3858_14250 PF07497 Rho termination factor, RNA-binding domain A3858_14260 PF02545 Maf-like protein A3858_14265 PF18317 Shikimate 5'-dehydrogenase C-terminal domain A3858_14265 PF01488 Shikimate / quinate 5-dehydrogenase A3858_14265 PF08501 Shikimate dehydrogenase substrate binding domain A3858_14270 PF01121 Dephospho-CoA kinase A3858_14275 PF00929 Exonuclease A3858_14280 PF02556 Preprotein translocase subunit SecB A3858_14285 PF04186 FxsA cytoplasmic membrane protein A3858_14300 PF01713 Smr domain A3858_14310 PF00356 Bacterial regulatory proteins, lacI family A3858_14320 PF02894 Oxidoreductase family, C-terminal alpha/beta domain A3858_14320 PF01408 Oxidoreductase family, NAD-binding Rossmann fold A3858_14325 PF00005 ABC transporter A3858_14330 PF02653 Branched-chain amino acid transport system / permease component A3858_14335 PF13407 Periplasmic binding protein domain A3858_14365 PF00871 Acetokinase family A3858_14370 PF01515 Phosphate acetyl/butaryl transferase A3858_14380 PF00561 alpha/beta hydrolase fold A3858_14380 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus A3858_14385 PF08386 TAP-like protein A3858_14385 PF00561 alpha/beta hydrolase fold A3858_14400 PF00563 EAL domain A3858_14400 PF04940 Sensors of blue-light using FAD A3858_14415 PF03814 Potassium-transporting ATPase A subunit A3858_14425 PF02669 K+-transporting ATPase, c chain A3858_14430 PF02702 Osmosensitive K+ channel His kinase sensor domain A3858_14430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_14430 PF13492 GAF domain A3858_14430 PF13493 Domain of unknown function (DUF4118) A3858_14430 PF00512 His Kinase A (phospho-acceptor) domain A3858_14435 PF00486 Transcriptional regulatory protein, C terminal A3858_14435 PF00072 Response regulator receiver domain A3858_14440 PF05532 CsbD-like A3858_14445 PF12282 Signal transduction histidine kinase A3858_14445 PF07568 Histidine kinase A3858_14445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_14450 PF08281 Sigma-70, region 4 A3858_14450 PF04542 Sigma-70 region 2 A3858_14460 PF00072 Response regulator receiver domain A3858_14470 PF00027 Cyclic nucleotide-binding domain A3858_14470 PF13545 Crp-like helix-turn-helix domain A3858_14485 PF13419 Haloacid dehalogenase-like hydrolase A3858_14490 PF13419 Haloacid dehalogenase-like hydrolase A3858_14495 PF17866 AAA lid domain A3858_14495 PF00004 ATPase family associated with various cellular activities (AAA) A3858_14500 PF00101 Ribulose bisphosphate carboxylase, small chain A3858_14505 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain A3858_14505 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain A3858_14510 PF01116 Fructose-bisphosphate aldolase class-II A3858_14515 PF00485 Phosphoribulokinase / Uridine kinase family A3858_14520 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain A3858_14525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_14525 PF03466 LysR substrate binding domain A3858_14530 PF00005 ABC transporter A3858_14535 PF00005 ABC transporter A3858_14535 PF12399 Branched-chain amino acid ATP-binding cassette transporter A3858_14545 PF02653 Branched-chain amino acid transport system / permease component A3858_14550 PF13458 Periplasmic binding protein A3858_14560 PF00171 Aldehyde dehydrogenase family A3858_14565 PF14765 Polyketide synthase dehydratase A3858_14565 PF08659 KR domain A3858_14565 PF00550 Phosphopantetheine attachment site A3858_14565 PF00698 Acyl transferase domain A3858_14565 PF16197 Ketoacyl-synthetase C-terminal extension A3858_14565 PF00109 Beta-ketoacyl synthase, N-terminal domain A3858_14565 PF02801 Beta-ketoacyl synthase, C-terminal domain A3858_14570 PF02780 Transketolase, C-terminal domain A3858_14570 PF02779 Transketolase, pyrimidine binding domain A3858_14575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A3858_14575 PF02770 Acyl-CoA dehydrogenase, middle domain A3858_14575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A3858_14580 PF03466 LysR substrate binding domain A3858_14580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_14585 PF01979 Amidohydrolase family A3858_14610 PF13677 Membrane MotB of proton-channel complex MotA/MotB A3858_14610 PF00691 OmpA family A3858_14615 PF07559 Flagellar basal body protein FlaE A3858_14615 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A3858_14615 PF00460 Flagella basal body rod protein A3858_14630 PF02119 Flagellar P-ring protein A3858_14635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_14635 PF13426 PAS domain A3858_14635 PF00072 Response regulator receiver domain A3858_14645 PF00813 FliP family A3858_14650 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term A3858_14660 PF08345 Flagellar M-ring protein C-terminal A3858_14660 PF01514 Secretory protein of YscJ/FliF family A3858_14680 PF01618 MotA/TolQ/ExbB proton channel family A3858_14695 PF00771 FHIPEP family A3858_14705 PF01312 FlhB HrpN YscU SpaS Family A3858_14720 PF02107 Flagellar L-ring protein A3858_14730 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A3858_14730 PF00460 Flagella basal body rod protein A3858_14735 PF00460 Flagella basal body rod protein A3858_14735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A3858_14740 PF01313 Bacterial export proteins, family 3 A3858_14745 PF02049 Flagellar hook-basal body complex protein FliE A3858_14750 PF00460 Flagella basal body rod protein A3858_14750 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A3858_14755 PF00460 Flagella basal body rod protein A3858_14760 PF02874 ATP synthase alpha/beta family, beta-barrel domain A3858_14760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A3858_14760 PF18269 T3SS EscN ATPase C-terminal domain A3858_14785 PF03963 Flagellar hook capping protein - N-terminal region A3858_14790 PF03109 ABC1 family A3858_14795 PF01209 ubiE/COQ5 methyltransferase family A3858_14800 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain A3858_14800 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain A3858_14805 PF00378 Enoyl-CoA hydratase/isomerase A3858_14810 PF01649 Ribosomal protein S20 A3858_14815 PF00308 Bacterial dnaA protein A3858_14815 PF08299 Bacterial dnaA protein helix-turn-helix A3858_14815 PF11638 DnaA N-terminal domain A3858_14820 PF02767 DNA polymerase III beta subunit, central domain A3858_14820 PF00712 DNA polymerase III beta subunit, N-terminal domain A3858_14820 PF02768 DNA polymerase III beta subunit, C-terminal domain A3858_14825 PF02463 RecF/RecN/SMC N terminal domain A3858_14835 PF01751 Toprim domain A3858_14835 PF00986 DNA gyrase B subunit, carboxyl terminus A3858_14835 PF00204 DNA gyrase B A3858_14835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_14840 PF10011 Predicted membrane protein (DUF2254) A3858_14845 PF03969 AFG1-like ATPase A3858_14855 PF00266 Aminotransferase class-V A3858_14860 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A3858_14860 PF01842 ACT domain A3858_14860 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain A3858_14865 PF00149 Calcineurin-like phosphoesterase A3858_14870 PF00108 Thiolase, N-terminal domain A3858_14870 PF02803 Thiolase, C-terminal domain A3858_14875 PF06832 Penicillin-Binding Protein C-terminus Family A3858_14875 PF00912 Transglycosylase A3858_14875 PF00905 Penicillin binding protein transpeptidase domain A3858_14880 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain A3858_14880 PF17962 Bacterial macroglobulin domain 6 A3858_14880 PF11974 Bacterial alpha-2-macroglobulin MG3 domain A3858_14880 PF01835 MG2 domain A3858_14880 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain A3858_14880 PF00207 Alpha-2-macroglobulin family A3858_14880 PF07678 A-macroglobulin TED domain A3858_14880 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain A3858_14880 PF07703 Alpha-2-macroglobulin bait region domain A3858_14885 PF00072 Response regulator receiver domain A3858_14885 PF01627 Hpt domain A3858_14885 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) A3858_14885 PF00512 His Kinase A (phospho-acceptor) domain A3858_14885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_14885 PF00672 HAMP domain A3858_14890 PF03883 Peroxide stress protein YaaA A3858_14895 PF09382 RQC domain A3858_14895 PF00271 Helicase conserved C-terminal domain A3858_14895 PF00570 HRDC domain A3858_14895 PF16124 RecQ zinc-binding A3858_14895 PF00270 DEAD/DEAH box helicase A3858_14915 PF03411 Penicillin-insensitive murein endopeptidase A3858_14925 PF02592 Putative vitamin uptake transporter A3858_14930 PF00472 RF-1 domain A3858_14935 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain A3858_14935 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family A3858_14940 PF00857 Isochorismatase family A3858_14950 PF05035 2-keto-3-deoxy-galactonokinase A3858_14955 PF00128 Alpha amylase, catalytic domain A3858_14960 PF07690 Major Facilitator Superfamily A3858_14970 PF00534 Glycosyl transferases group 1 A3858_14980 PF02774 Semialdehyde dehydrogenase, dimerisation domain A3858_14980 PF01118 Semialdehyde dehydrogenase, NAD binding domain A3858_14985 PF00484 Carbonic anhydrase A3858_14995 PF02789 Cytosol aminopeptidase family, N-terminal domain A3858_14995 PF00883 Cytosol aminopeptidase family, catalytic domain A3858_15000 PF00877 NlpC/P60 family A3858_15005 PF06224 Winged helix DNA-binding domain A3858_15010 PF04055 Radical SAM superfamily A3858_15030 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus A3858_15030 PF01048 Phosphorylase superfamily A3858_15040 PF00892 EamA-like transporter family A3858_15045 PF01264 Chorismate synthase A3858_15055 PF00528 Binding-protein-dependent transport system inner membrane component A3858_15060 PF00005 ABC transporter A3858_15065 PF02167 Cytochrome C1 family A3858_15070 PF00033 Cytochrome b/b6/petB A3858_15070 PF00032 Cytochrome b(C-terminal)/b6/petD A3858_15075 PF00355 Rieske [2Fe-2S] domain A3858_15075 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal A3858_15080 PF13417 Glutathione S-transferase, N-terminal domain A3858_15080 PF00043 Glutathione S-transferase, C-terminal domain A3858_15090 PF00444 Ribosomal protein L36 A3858_15105 PF00817 impB/mucB/samB family A3858_15105 PF11799 impB/mucB/samB family C-terminal domain A3858_15110 PF01145 SPFH domain / Band 7 family A3858_15125 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family A3858_15130 PF00480 ROK family A3858_15140 PF02861 Clp amino terminal domain, pathogenicity island component A3858_15140 PF17871 AAA lid domain A3858_15140 PF07724 AAA domain (Cdc48 subfamily) A3858_15140 PF00004 ATPase family associated with various cellular activities (AAA) A3858_15140 PF10431 C-terminal, D2-small domain, of ClpB protein A3858_15145 PF02469 Fasciclin domain A3858_15150 PF00174 Oxidoreductase molybdopterin binding domain A3858_15205 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH A3858_15250 PF00829 Ribosomal prokaryotic L21 protein A3858_15255 PF01016 Ribosomal L27 protein A3858_15265 PF01018 GTP1/OBG A3858_15265 PF01926 50S ribosome-binding GTPase A3858_15270 PF01472 PUA domain A3858_15270 PF00696 Amino acid kinase family A3858_15275 PF00171 Aldehyde dehydrogenase family A3858_15280 PF10090 Histidine phosphotransferase C-terminal domain A3858_15300 PF02581 Thiamine monophosphate synthase A3858_15315 PF02628 Cytochrome oxidase assembly protein A3858_15320 PF02074 Carboxypeptidase Taq (M32) metallopeptidase A3858_15330 PF00378 Enoyl-CoA hydratase/isomerase A3858_15350 PF01979 Amidohydrolase family A3858_15400 PF13005 zinc-finger binding domain of transposase IS66 A3858_15400 PF13007 Transposase C of IS166 homeodomain A3858_15400 PF13817 IS66 C-terminal element A3858_15400 PF03050 Transposase IS66 family A3858_15410 PF03328 HpcH/HpaI aldolase/citrate lyase family A3858_15415 PF05853 beta-keto acid cleavage enzyme A3858_15425 PF01613 Flavin reductase like domain A3858_15430 PF08028 Acyl-CoA dehydrogenase, C-terminal domain A3858_15460 PF02525 Flavodoxin-like fold A3858_15470 PF00392 Bacterial regulatory proteins, gntR family A3858_15470 PF00155 Aminotransferase class I and II A3858_15475 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase A3858_15475 PF12801 4Fe-4S binding domain A3858_15475 PF13746 4Fe-4S dicluster domain A3858_15480 PF00155 Aminotransferase class I and II A3858_15485 PF00392 Bacterial regulatory proteins, gntR family A3858_15485 PF07729 FCD domain A3858_15490 PF00528 Binding-protein-dependent transport system inner membrane component A3858_15500 PF00005 ABC transporter A3858_15500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A3858_15505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A3858_15505 PF00005 ABC transporter A3858_15515 PF07690 Major Facilitator Superfamily A3858_15520 PF02129 X-Pro dipeptidyl-peptidase (S15 family) A3858_15520 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain A3858_15530 PF00528 Binding-protein-dependent transport system inner membrane component A3858_15535 PF00528 Binding-protein-dependent transport system inner membrane component A3858_15545 PF00005 ABC transporter A3858_15545 PF08402 TOBE domain A3858_15555 PF01627 Hpt domain A3858_15555 PF17149 Periplasmic sensor domain found in signal transduction proteins A3858_15555 PF00072 Response regulator receiver domain A3858_15555 PF00672 HAMP domain A3858_15555 PF00512 His Kinase A (phospho-acceptor) domain A3858_15555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_15560 PF00072 Response regulator receiver domain A3858_15560 PF00486 Transcriptional regulatory protein, C terminal A3858_15565 PF03264 NapC/NirT cytochrome c family, N-terminal region A3858_15575 PF01568 Molydopterin dinucleotide binding domain A3858_15575 PF18364 Molybdopterin oxidoreductase N-terminal domain A3858_15575 PF00384 Molybdopterin oxidoreductase A3858_15580 PF03453 MoeA N-terminal region (domain I and II) A3858_15580 PF03454 MoeA C-terminal region (domain IV) A3858_15580 PF00994 Probable molybdopterin binding domain A3858_15585 PF04055 Radical SAM superfamily A3858_15585 PF06463 Molybdenum Cofactor Synthesis C A3858_15600 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily A3858_15605 PF01738 Dienelactone hydrolase family A3858_15625 PF00571 CBS domain A3858_15625 PF00005 ABC transporter A3858_15630 PF00528 Binding-protein-dependent transport system inner membrane component A3858_15655 PF13193 AMP-binding enzyme C-terminal domain A3858_15655 PF00501 AMP-binding enzyme A3858_15660 PF00455 DeoR C terminal sensor domain A3858_15660 PF08220 DeoR-like helix-turn-helix domain A3858_15670 PF07690 Major Facilitator Superfamily A3858_15685 PF03358 NADPH-dependent FMN reductase A3858_15690 PF05161 MOFRL family A3858_15690 PF13660 Domain of unknown function (DUF4147) A3858_15700 PF07995 Glucose / Sorbosone dehydrogenase A3858_15705 PF03734 L,D-transpeptidase catalytic domain A3858_15710 PF00920 Dehydratase family A3858_15715 PF03781 Sulfatase-modifying factor enzyme 1 A3858_15715 PF12867 DinB superfamily A3858_15720 PF10017 Histidine-specific methyltransferase, SAM-dependent A3858_15725 PF04244 Deoxyribodipyrimidine photo-lyase-related protein A3858_15735 PF01497 Periplasmic binding protein A3858_15740 PF02028 BCCT, betaine/carnitine/choline family transporter A3858_15745 PF00005 ABC transporter A3858_15745 PF00664 ABC transporter transmembrane region A3858_15755 PF02203 Tar ligand binding domain homologue A3858_15755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A3858_15755 PF00672 HAMP domain A3858_15765 PF08019 Phosphoethanolamine transferase EptA/EptB A3858_15765 PF00884 Sulfatase A3858_15770 PF01219 Prokaryotic diacylglycerol kinase A3858_15775 PF00512 His Kinase A (phospho-acceptor) domain A3858_15775 PF08521 Two-component sensor kinase N-terminal A3858_15775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_15780 PF00072 Response regulator receiver domain A3858_15780 PF00486 Transcriptional regulatory protein, C terminal A3858_15790 PF08274 PhnA Zinc-Ribbon A3858_15790 PF03831 PhnA domain A3858_15805 PF01027 Inhibitor of apoptosis-promoting Bax1 A3858_15815 PF08281 Sigma-70, region 4 A3858_15815 PF04542 Sigma-70 region 2 A3858_15825 PF00115 Cytochrome C and Quinol oxidase polypeptide I A3858_15845 PF08447 PAS fold A3858_15845 PF08448 PAS fold A3858_15845 PF00563 EAL domain A3858_15845 PF00990 Diguanylate cyclase, GGDEF domain A3858_15855 PF02416 mttA/Hcf106 family A3858_15870 PF08240 Alcohol dehydrogenase GroES-like domain A3858_15870 PF00107 Zinc-binding dehydrogenase A3858_15870 PF13823 Alcohol dehydrogenase GroES-associated A3858_15875 PF07536 HWE histidine kinase A3858_15875 PF13426 PAS domain A3858_15875 PF13581 Histidine kinase-like ATPase domain A3858_15885 PF02583 Metal-sensitive transcriptional repressor A3858_15895 PF16591 Helical bimodular sensor domain A3858_15895 PF00672 HAMP domain A3858_15895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A3858_15920 PF01266 FAD dependent oxidoreductase A3858_15925 PF15887 Putative zinc-binding metallo-peptidase A3858_15925 PF10005 zinc-ribbon domain A3858_15935 PF01594 AI-2E family transporter A3858_15945 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment A3858_15970 PF13409 Glutathione S-transferase, N-terminal domain A3858_15975 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase A3858_15980 PF03466 LysR substrate binding domain A3858_15980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_15990 PF01758 Sodium Bile acid symporter family A3858_15995 PF03960 ArsC family A3858_16005 PF00069 Protein kinase domain A3858_16010 PF13180 PDZ domain A3858_16015 PF00005 ABC transporter A3858_16015 PF03459 TOBE domain A3858_16025 PF03781 Sulfatase-modifying factor enzyme 1 A3858_16035 PF00069 Protein kinase domain A3858_16050 PF13454 FAD-NAD(P)-binding A3858_16055 PF08450 SMP-30/Gluconolactonase/LRE-like region A3858_16075 PF00474 Sodium:solute symporter family A3858_16085 PF03601 Conserved hypothetical protein 698 A3858_16090 PF05681 Fumarate hydratase (Fumerase) A3858_16090 PF05683 Fumarase C-terminus A3858_16100 PF02910 Fumarate reductase flavoprotein C-term A3858_16100 PF00890 FAD binding domain A3858_16115 PF13085 2Fe-2S iron-sulfur cluster binding domain A3858_16115 PF13183 4Fe-4S dicluster domain A3858_16130 PF00528 Binding-protein-dependent transport system inner membrane component A3858_16135 PF00005 ABC transporter A3858_16140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain A3858_16140 PF00205 Thiamine pyrophosphate enzyme, central domain A3858_16140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain A3858_16145 PF03466 LysR substrate binding domain A3858_16145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_16160 PF00005 ABC transporter A3858_16165 PF13533 Biotin-lipoyl like A3858_16170 PF03706 Lysylphosphatidylglycerol synthase TM region A3858_16180 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase A3858_16185 PF00111 2Fe-2S iron-sulfur cluster binding domain A3858_16185 PF01799 [2Fe-2S] binding domain A3858_16190 PF00392 Bacterial regulatory proteins, gntR family A3858_16190 PF07729 FCD domain A3858_16195 PF00528 Binding-protein-dependent transport system inner membrane component A3858_16200 PF00005 ABC transporter A3858_16210 PF01557 Fumarylacetoacetate (FAA) hydrolase family A3858_16215 PF03737 Aldolase/RraA A3858_16220 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase A3858_16220 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase A3858_16225 PF01925 Sulfite exporter TauE/SafE A3858_16230 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin A3858_16245 PF02801 Beta-ketoacyl synthase, C-terminal domain A3858_16245 PF00109 Beta-ketoacyl synthase, N-terminal domain A3858_16250 PF07977 FabA-like domain A3858_16255 PF01475 Ferric uptake regulator family A3858_16265 PF02515 CoA-transferase family III A3858_16270 PF02770 Acyl-CoA dehydrogenase, middle domain A3858_16270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A3858_16270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A3858_16275 PF00106 short chain dehydrogenase A3858_16280 PF02803 Thiolase, C-terminal domain A3858_16280 PF00108 Thiolase, N-terminal domain A3858_16285 PF07685 CobB/CobQ-like glutamine amidotransferase domain A3858_16285 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain A3858_16300 PF04349 Periplasmic glucan biosynthesis protein, MdoG A3858_16305 PF02424 ApbE family A3858_16315 PF00037 4Fe-4S binding domain A3858_16320 PF00111 2Fe-2S iron-sulfur cluster binding domain A3858_16325 PF00258 Flavodoxin A3858_16325 PF00753 Metallo-beta-lactamase superfamily A3858_16330 PF02508 Rnf-Nqr subunit, membrane protein A3858_16335 PF04060 Putative Fe-S cluster A3858_16340 PF10531 SLBB domain A3858_16340 PF13237 4Fe-4S dicluster domain A3858_16340 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit A3858_16340 PF13375 RnfC Barrel sandwich hybrid domain A3858_16345 PF03116 NQR2, RnfD, RnfE family A3858_16350 PF04205 FMN-binding domain A3858_16355 PF02508 Rnf-Nqr subunit, membrane protein A3858_16360 PF03658 RnfH family Ubiquitin A3858_16370 PF00012 Hsp70 protein A3858_16375 PF00248 Aldo/keto reductase family A3858_16380 PF06719 AraC-type transcriptional regulator N-terminus A3858_16380 PF12833 Helix-turn-helix domain A3858_16385 PF01965 DJ-1/PfpI family A3858_16385 PF12833 Helix-turn-helix domain A3858_16395 PF03450 CO dehydrogenase flavoprotein C-terminal domain A3858_16395 PF00941 FAD binding domain in molybdopterin dehydrogenase A3858_16400 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase A3858_16400 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain A3858_16410 PF13190 PDGLE domain A3858_16410 PF01891 Cobalt uptake substrate-specific transmembrane region A3858_16425 PF00005 ABC transporter A3858_16430 PF02322 Cytochrome bd terminal oxidase subunit II A3858_16435 PF01654 Cytochrome bd terminal oxidase subunit I A3858_16445 PF13514 AAA domain A3858_16450 PF00149 Calcineurin-like phosphoesterase A3858_16455 PF00881 Nitroreductase family A3858_16465 PF00072 Response regulator receiver domain A3858_16465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_16465 PF01627 Hpt domain A3858_16465 PF00672 HAMP domain A3858_16465 PF00512 His Kinase A (phospho-acceptor) domain A3858_16465 PF17149 Periplasmic sensor domain found in signal transduction proteins A3858_16470 PF01032 FecCD transport family A3858_16475 PF01032 FecCD transport family A3858_16480 PF00005 ABC transporter A3858_16485 PF00593 TonB dependent receptor A3858_16485 PF07715 TonB-dependent Receptor Plug Domain A3858_16495 PF02146 Sir2 family A3858_16500 PF12544 Lysine-2,3-aminomutase A3858_16500 PF04055 Radical SAM superfamily A3858_16510 PF13406 Transglycosylase SLT domain A3858_16520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A3858_16525 PF00528 Binding-protein-dependent transport system inner membrane component A3858_16530 PF12911 N-terminal TM domain of oligopeptide transport permease C A3858_16530 PF00528 Binding-protein-dependent transport system inner membrane component A3858_16540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A3858_16540 PF00005 ABC transporter A3858_16545 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily A3858_16555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_16555 PF00512 His Kinase A (phospho-acceptor) domain A3858_16555 PF00672 HAMP domain A3858_16560 PF00486 Transcriptional regulatory protein, C terminal A3858_16560 PF00072 Response regulator receiver domain A3858_16565 PF13180 PDZ domain A3858_16580 PF00144 Beta-lactamase A3858_16580 PF07930 D-aminopeptidase, domain B A3858_16585 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A3858_16590 PF00005 ABC transporter A3858_16590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A3858_16600 PF00528 Binding-protein-dependent transport system inner membrane component A3858_16605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A3858_16605 PF00005 ABC transporter A3858_16610 PF03069 Acetamidase/Formamidase family A3858_16615 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A3858_16620 PF00528 Binding-protein-dependent transport system inner membrane component A3858_16625 PF12911 N-terminal TM domain of oligopeptide transport permease C A3858_16625 PF00528 Binding-protein-dependent transport system inner membrane component A3858_16640 PF00202 Aminotransferase class-III A3858_16650 PF00127 Copper binding proteins, plastocyanin/azurin family A3858_16655 PF13442 Cytochrome C oxidase, cbb3-type, subunit III A3858_16655 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP A3858_16665 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain A3858_16670 PF00485 Phosphoribulokinase / Uridine kinase family A3858_16680 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain A3858_16680 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain A3858_16725 PF02894 Oxidoreductase family, C-terminal alpha/beta domain A3858_16725 PF01408 Oxidoreductase family, NAD-binding Rossmann fold A3858_16730 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain A3858_16730 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain A3858_16730 PF00205 Thiamine pyrophosphate enzyme, central domain A3858_16735 PF01261 Xylose isomerase-like TIM barrel A3858_16740 PF04962 KduI/IolB family A3858_16745 PF08402 TOBE domain A3858_16745 PF00005 ABC transporter A3858_16750 PF00528 Binding-protein-dependent transport system inner membrane component A3858_16755 PF00528 Binding-protein-dependent transport system inner membrane component A3858_16760 PF13416 Bacterial extracellular solute-binding protein A3858_16765 PF02690 Na+/Pi-cotransporter A3858_16770 PF05199 GMC oxidoreductase A3858_16770 PF00732 GMC oxidoreductase A3858_16780 PF02653 Branched-chain amino acid transport system / permease component A3858_16785 PF00005 ABC transporter A3858_16790 PF00005 ABC transporter A3858_16790 PF12399 Branched-chain amino acid ATP-binding cassette transporter A3858_16820 PF01081 KDPG and KHG aldolase A3858_16825 PF00486 Transcriptional regulatory protein, C terminal A3858_16825 PF00072 Response regulator receiver domain A3858_16830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A3858_16830 PF00672 HAMP domain A3858_16830 PF02203 Tar ligand binding domain homologue A3858_16840 PF03109 ABC1 family A3858_16860 PF00892 EamA-like transporter family A3858_16925 PF17754 MftR C-terminal domain A3858_16925 PF00440 Bacterial regulatory proteins, tetR family A3858_16930 PF00873 AcrB/AcrD/AcrF family A3858_16935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A3858_16935 PF00529 HlyD membrane-fusion protein of T1SS A3858_16940 PF01590 GAF domain A3858_16940 PF02954 Bacterial regulatory protein, Fis family A3858_16940 PF00158 Sigma-54 interaction domain A3858_16950 PF17874 MalT-like TPR region A3858_16950 PF00196 Bacterial regulatory proteins, luxR family A3858_16955 PF01943 Polysaccharide biosynthesis protein A3858_16960 PF01451 Low molecular weight phosphotyrosine protein phosphatase A3858_16985 PF03600 Citrate transporter A3858_16985 PF02080 TrkA-C domain A3858_16995 PF04172 LrgB-like family A3858_17005 PF01177 Asp/Glu/Hydantoin racemase A3858_17015 PF00528 Binding-protein-dependent transport system inner membrane component A3858_17025 PF00005 ABC transporter A3858_17025 PF08402 TOBE domain A3858_17035 PF02082 Transcriptional regulator A3858_17040 PF00892 EamA-like transporter family A3858_17045 PF00210 Ferritin-like domain A3858_17055 PF08448 PAS fold A3858_17055 PF00990 Diguanylate cyclase, GGDEF domain A3858_17060 PF01594 AI-2E family transporter A3858_17140 PF03807 NADP oxidoreductase coenzyme F420-dependent A3858_17140 PF14748 Pyrroline-5-carboxylate reductase dimerisation A3858_17145 PF01588 Putative tRNA binding domain A3858_17150 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A3858_17150 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain A3858_17165 PF08448 PAS fold A3858_17165 PF00990 Diguanylate cyclase, GGDEF domain A3858_17170 PF01425 Amidase A3858_17175 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component A3858_17185 PF03480 Bacterial extracellular solute-binding protein, family 7 A3858_17190 PF00005 ABC transporter A3858_17190 PF02687 FtsX-like permease family A3858_17190 PF12704 MacB-like periplasmic core domain A3858_17195 PF02687 FtsX-like permease family A3858_17195 PF00005 ABC transporter A3858_17195 PF12704 MacB-like periplasmic core domain A3858_17205 PF01220 Dehydroquinase class II A3858_17230 PF00107 Zinc-binding dehydrogenase A3858_17230 PF08240 Alcohol dehydrogenase GroES-like domain A3858_17240 PF04199 Putative cyclase A3858_17245 PF13378 Enolase C-terminal domain-like A3858_17250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_17250 PF03466 LysR substrate binding domain A3858_17255 PF03401 Tripartite tricarboxylate transporter family receptor A3858_17260 PF01970 Tripartite tricarboxylate transporter TctA family A3858_17265 PF00180 Isocitrate/isopropylmalate dehydrogenase A3858_17270 PF00180 Isocitrate/isopropylmalate dehydrogenase A3858_17275 PF00005 ABC transporter A3858_17280 PF01032 FecCD transport family A3858_17290 PF00528 Binding-protein-dependent transport system inner membrane component A3858_17295 PF00528 Binding-protein-dependent transport system inner membrane component A3858_17300 PF08402 TOBE domain A3858_17300 PF00005 ABC transporter A3858_17310 PF03737 Aldolase/RraA A3858_17315 PF00795 Carbon-nitrogen hydrolase A3858_17320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_17320 PF03466 LysR substrate binding domain A3858_17325 PF00990 Diguanylate cyclase, GGDEF domain A3858_17330 PF03707 Bacterial signalling protein N terminal repeat A3858_17330 PF00990 Diguanylate cyclase, GGDEF domain A3858_17330 PF00563 EAL domain A3858_17340 PF07005 Sugar-binding N-terminal domain A3858_17340 PF17042 Nucleotide-binding C-terminal domain A3858_17350 PF04166 Pyridoxal phosphate biosynthetic protein PdxA A3858_17355 PF01842 ACT domain A3858_17355 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain A3858_17355 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A3858_17360 PF00701 Dihydrodipicolinate synthetase family A3858_17370 PF03401 Tripartite tricarboxylate transporter family receptor A3858_17380 PF00465 Iron-containing alcohol dehydrogenase A3858_17385 PF00005 ABC transporter A3858_17390 PF01032 FecCD transport family A3858_17395 PF01032 FecCD transport family A3858_17405 PF07715 TonB-dependent Receptor Plug Domain A3858_17405 PF00593 TonB dependent receptor A3858_17420 PF00672 HAMP domain A3858_17420 PF02203 Tar ligand binding domain homologue A3858_17420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A3858_17435 PF03372 Endonuclease/Exonuclease/phosphatase family A3858_17450 PF03738 Glutathionylspermidine synthase preATP-grasp A3858_17470 PF00072 Response regulator receiver domain A3858_17470 PF00486 Transcriptional regulatory protein, C terminal A3858_17475 PF00512 His Kinase A (phospho-acceptor) domain A3858_17475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_17475 PF08521 Two-component sensor kinase N-terminal A3858_17480 PF00672 HAMP domain A3858_17480 PF16591 Helical bimodular sensor domain A3858_17480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A3858_17485 PF01402 Ribbon-helix-helix protein, copG family A3858_17485 PF08753 NikR C terminal nickel binding domain A3858_17500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_17500 PF03466 LysR substrate binding domain A3858_17505 PF00155 Aminotransferase class I and II A3858_17525 PF03737 Aldolase/RraA A3858_17530 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A3858_17535 PF03069 Acetamidase/Formamidase family A3858_17540 PF00557 Metallopeptidase family M24 A3858_17540 PF01321 Creatinase/Prolidase N-terminal domain A3858_17545 PF07729 FCD domain A3858_17545 PF00392 Bacterial regulatory proteins, gntR family A3858_17550 PF07687 Peptidase dimerisation domain A3858_17550 PF01546 Peptidase family M20/M25/M40 A3858_17555 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain A3858_17555 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A3858_17555 PF01842 ACT domain A3858_17560 PF00392 Bacterial regulatory proteins, gntR family A3858_17560 PF07729 FCD domain A3858_17565 PF02626 Carboxyltransferase domain, subdomain A and B A3858_17570 PF02682 Carboxyltransferase domain, subdomain C and D A3858_17575 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component A3858_17585 PF03480 Bacterial extracellular solute-binding protein, family 7 A3858_17590 PF03746 LamB/YcsF family A3858_17595 PF01063 Amino-transferase class IV A3858_17600 PF00701 Dihydrodipicolinate synthetase family A3858_17605 PF00497 Bacterial extracellular solute-binding proteins, family 3 A3858_17610 PF00005 ABC transporter A3858_17615 PF00528 Binding-protein-dependent transport system inner membrane component A3858_17620 PF00528 Binding-protein-dependent transport system inner membrane component A3858_17625 PF00795 Carbon-nitrogen hydrolase A3858_17630 PF01979 Amidohydrolase family A3858_17630 PF00449 Urease alpha-subunit, N-terminal domain A3858_17635 PF01177 Asp/Glu/Hydantoin racemase A3858_17640 PF03466 LysR substrate binding domain A3858_17640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_17645 PF01613 Flavin reductase like domain A3858_17685 PF07724 AAA domain (Cdc48 subfamily) A3858_17685 PF17871 AAA lid domain A3858_17685 PF10431 C-terminal, D2-small domain, of ClpB protein A3858_17685 PF00004 ATPase family associated with various cellular activities (AAA) A3858_17690 PF00069 Protein kinase domain A3858_17710 PF05638 Type VI secretion system effector, Hcp A3858_17760 PF16671 Actin cross-linking domain A3858_17760 PF04717 Type VI secretion system, phage-baseplate injector A3858_17820 PF00596 Class II Aldolase and Adducin N-terminal domain A3858_17825 PF13407 Periplasmic binding protein domain A3858_17830 PF02653 Branched-chain amino acid transport system / permease component A3858_17835 PF02653 Branched-chain amino acid transport system / permease component A3858_17840 PF00005 ABC transporter A3858_17845 PF04198 Putative sugar-binding domain A3858_17850 PF00370 FGGY family of carbohydrate kinases, N-terminal domain A3858_17850 PF02782 FGGY family of carbohydrate kinases, C-terminal domain A3858_17875 PF00072 Response regulator receiver domain A3858_17875 PF00486 Transcriptional regulatory protein, C terminal A3858_17880 PF00512 His Kinase A (phospho-acceptor) domain A3858_17880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_17885 PF07694 5TMR of 5TMR-LYT A3858_17885 PF00990 Diguanylate cyclase, GGDEF domain A3858_17900 PF00005 ABC transporter A3858_17900 PF08402 TOBE domain A3858_17905 PF00528 Binding-protein-dependent transport system inner membrane component A3858_17910 PF00528 Binding-protein-dependent transport system inner membrane component A3858_17915 PF05544 Proline racemase A3858_17920 PF00005 ABC transporter A3858_17920 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A3858_17925 PF12911 N-terminal TM domain of oligopeptide transport permease C A3858_17925 PF00528 Binding-protein-dependent transport system inner membrane component A3858_17930 PF00528 Binding-protein-dependent transport system inner membrane component A3858_17935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A3858_17940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A3858_17945 PF01425 Amidase A3858_17950 PF00850 Histone deacetylase domain A3858_17970 PF13193 AMP-binding enzyme C-terminal domain A3858_17970 PF00501 AMP-binding enzyme A3858_17975 PF00171 Aldehyde dehydrogenase family A3858_17980 PF00202 Aminotransferase class-III A3858_17985 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain A3858_17985 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain A3858_17985 PF00378 Enoyl-CoA hydratase/isomerase A3858_17990 PF00108 Thiolase, N-terminal domain A3858_17990 PF02803 Thiolase, C-terminal domain A3858_17995 PF00107 Zinc-binding dehydrogenase A3858_17995 PF16884 N-terminal domain of oxidoreductase A3858_18035 PF02867 Ribonucleotide reductase, barrel domain A3858_18035 PF00317 Ribonucleotide reductase, all-alpha domain A3858_18035 PF03477 ATP cone domain A3858_18045 PF01634 ATP phosphoribosyltransferase A3858_18050 PF13393 Histidyl-tRNA synthetase A3858_18055 PF13393 Histidyl-tRNA synthetase A3858_18055 PF03129 Anticodon binding domain A3858_18065 PF14579 Helix-hairpin-helix motif A3858_18065 PF07733 Bacterial DNA polymerase III alpha NTPase domain A3858_18065 PF17657 Bacterial DNA polymerase III alpha subunit finger domain A3858_18065 PF02811 PHP domain A3858_18075 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain A3858_18075 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase A3858_18100 PF02608 ABC transporter substrate-binding protein PnrA-like A3858_18105 PF07992 Pyridine nucleotide-disulphide oxidoreductase A3858_18110 PF01266 FAD dependent oxidoreductase A3858_18120 PF01183 Glycosyl hydrolases family 25 A3858_18125 PF08669 Glycine cleavage T-protein C-terminal barrel domain A3858_18125 PF01571 Aminomethyltransferase folate-binding domain A3858_18130 PF00950 ABC 3 transport family A3858_18135 PF00005 ABC transporter A3858_18145 PF01297 Zinc-uptake complex component A periplasmic A3858_18155 PF00741 Gas vesicle protein A3858_18160 PF00221 Aromatic amino acid lyase A3858_18165 PF05121 Gas vesicle protein K A3858_18165 PF00741 Gas vesicle protein A3858_18175 PF00741 Gas vesicle protein A3858_18200 PF00011 Hsp20/alpha crystallin family A3858_18205 PF00741 Gas vesicle protein A3858_18215 PF07728 AAA domain (dynein-related subfamily) A3858_18230 PF00291 Pyridoxal-phosphate dependent enzyme A3858_18240 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase A3858_18250 PF00216 Bacterial DNA-binding protein A3858_18255 PF00575 S1 RNA binding domain A3858_18260 PF02224 Cytidylate kinase A3858_18265 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) A3858_18270 PF02390 Putative methyltransferase A3858_18280 PF02772 S-adenosylmethionine synthetase, central domain A3858_18280 PF00438 S-adenosylmethionine synthetase, N-terminal domain A3858_18280 PF02773 S-adenosylmethionine synthetase, C-terminal domain A3858_18285 PF00795 Carbon-nitrogen hydrolase A3858_18290 PF00571 CBS domain A3858_18290 PF03471 Transporter associated domain A3858_18295 PF02130 Uncharacterized protein family UPF0054 A3858_18300 PF02562 PhoH-like protein A3858_18305 PF00919 Uncharacterized protein family UPF0004 A3858_18305 PF01938 TRAM domain A3858_18305 PF04055 Radical SAM superfamily A3858_18310 PF13472 GDSL-like Lipase/Acylhydrolase family A3858_18315 PF00005 ABC transporter A3858_18330 PF00581 Rhodanese-like domain A3858_18335 PF14759 Reductase C-terminal A3858_18335 PF07992 Pyridine nucleotide-disulphide oxidoreductase A3858_18340 PF04963 Sigma-54 factor, core binding domain A3858_18340 PF04552 Sigma-54, DNA binding domain A3858_18340 PF00309 Sigma-54 factor, Activator interacting domain (AID) A3858_18345 PF01968 Hydantoinase/oxoprolinase A3858_18345 PF05378 Hydantoinase/oxoprolinase N-terminal region A3858_18370 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) A3858_18425 PF10091 Putative glucoamylase A3858_18425 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain A3858_18425 PF06165 Glycosyltransferase family 36 A3858_18435 PF00118 TCP-1/cpn60 chaperonin family A3858_18470 PF00313 'Cold-shock' DNA-binding domain A3858_18475 PF00313 'Cold-shock' DNA-binding domain A3858_18575 PF01966 HD domain A3858_18575 PF13286 Phosphohydrolase-associated domain A3858_18615 PF06610 L-alanine exporter A3858_18635 PF00701 Dihydrodipicolinate synthetase family A3858_18640 PF00171 Aldehyde dehydrogenase family A3858_18645 PF03737 Aldolase/RraA A3858_18650 PF03328 HpcH/HpaI aldolase/citrate lyase family A3858_18655 PF00795 Carbon-nitrogen hydrolase A3858_18660 PF03480 Bacterial extracellular solute-binding protein, family 7 A3858_18665 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component A3858_18670 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component A3858_18675 PF00392 Bacterial regulatory proteins, gntR family A3858_18675 PF07729 FCD domain A3858_18685 PF03472 Autoinducer binding domain A3858_18685 PF00196 Bacterial regulatory proteins, luxR family A3858_18690 PF03504 Chlamydia cysteine-rich outer membrane protein 6 A3858_18690 PF01345 Domain of unknown function DUF11 A3858_18700 PF02894 Oxidoreductase family, C-terminal alpha/beta domain A3858_18700 PF01408 Oxidoreductase family, NAD-binding Rossmann fold A3858_18705 PF01261 Xylose isomerase-like TIM barrel A3858_18710 PF00528 Binding-protein-dependent transport system inner membrane component A3858_18715 PF00528 Binding-protein-dependent transport system inner membrane component A3858_18725 PF07859 alpha/beta hydrolase fold A3858_18730 PF07729 FCD domain A3858_18730 PF00392 Bacterial regulatory proteins, gntR family A3858_18735 PF17912 MalK OB fold domain A3858_18735 PF00005 ABC transporter A3858_18740 PF08021 Siderophore-interacting FAD-binding domain A3858_18740 PF04954 Siderophore-interacting protein A3858_18755 PF00724 NADH:flavin oxidoreductase / NADH oxidase family A3858_18765 PF00196 Bacterial regulatory proteins, luxR family A3858_18780 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family A3858_18780 PF00356 Bacterial regulatory proteins, lacI family A3858_18785 PF13407 Periplasmic binding protein domain A3858_18790 PF00005 ABC transporter A3858_18795 PF02653 Branched-chain amino acid transport system / permease component A3858_18800 PF02126 Phosphotriesterase family A3858_18810 PF00294 pfkB family carbohydrate kinase A3858_18825 PF01546 Peptidase family M20/M25/M40 A3858_18825 PF07687 Peptidase dimerisation domain A3858_18830 PF00005 ABC transporter A3858_18830 PF12857 TOBE-like domain A3858_18840 PF00528 Binding-protein-dependent transport system inner membrane component A3858_18845 PF00528 Binding-protein-dependent transport system inner membrane component A3858_18850 PF00356 Bacterial regulatory proteins, lacI family A3858_18860 PF00005 ABC transporter A3858_18865 PF02653 Branched-chain amino acid transport system / permease component A3858_18870 PF00106 short chain dehydrogenase A3858_18875 PF00370 FGGY family of carbohydrate kinases, N-terminal domain A3858_18875 PF02782 FGGY family of carbohydrate kinases, C-terminal domain A3858_18885 PF07992 Pyridine nucleotide-disulphide oxidoreductase A3858_18890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A3858_18890 PF00672 HAMP domain A3858_18890 PF12729 Four helix bundle sensory module for signal transduction A3858_18900 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) A3858_18905 PF01899 Na+/H+ ion antiporter subunit A3858_18910 PF00361 Proton-conducting membrane transporter A3858_18915 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L A3858_18920 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter A3858_18920 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus A3858_18920 PF00361 Proton-conducting membrane transporter A3858_18920 PF13244 Domain of unknown function (DUF4040) A3858_18925 PF02769 AIR synthase related protein, C-terminal domain A3858_18925 PF00586 AIR synthase related protein, N-terminal domain A3858_18935 PF00732 GMC oxidoreductase A3858_18935 PF05199 GMC oxidoreductase A3858_18965 PF07568 Histidine kinase A3858_18965 PF12282 Signal transduction histidine kinase A3858_18965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_18970 PF00350 Dynamin family A3858_18975 PF00350 Dynamin family A3858_18980 PF02525 Flavodoxin-like fold A3858_18990 PF02798 Glutathione S-transferase, N-terminal domain A3858_18995 PF08220 DeoR-like helix-turn-helix domain A3858_18995 PF00455 DeoR C terminal sensor domain A3858_19000 PF13407 Periplasmic binding protein domain A3858_19005 PF00005 ABC transporter A3858_19010 PF02653 Branched-chain amino acid transport system / permease component A3858_19015 PF02653 Branched-chain amino acid transport system / permease component A3858_19025 PF00294 pfkB family carbohydrate kinase A3858_19025 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) A3858_19030 PF01791 DeoC/LacD family aldolase A3858_19035 PF00171 Aldehyde dehydrogenase family A3858_19040 PF00497 Bacterial extracellular solute-binding proteins, family 3 A3858_19045 PF00491 Arginase family A3858_19050 PF00528 Binding-protein-dependent transport system inner membrane component A3858_19055 PF00005 ABC transporter A3858_19070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_19070 PF03466 LysR substrate binding domain A3858_19075 PF00144 Beta-lactamase A3858_19100 PF02463 RecF/RecN/SMC N terminal domain A3858_19110 PF00145 C-5 cytosine-specific DNA methylase A3858_19170 PF01906 Putative heavy-metal-binding A3858_19345 PF00589 Phage integrase family A3858_19345 PF02899 Phage integrase, N-terminal SAM-like domain A3858_19360 PF00202 Aminotransferase class-III A3858_19365 PF00582 Universal stress protein family A3858_19375 PF16868 NMT1-like family A3858_19385 PF01522 Polysaccharide deacetylase A3858_19400 PF01970 Tripartite tricarboxylate transporter TctA family A3858_19410 PF03401 Tripartite tricarboxylate transporter family receptor A3858_19425 PF13614 AAA domain A3858_19455 PF06122 Conjugative relaxosome accessory transposon protein A3858_19495 PF10881 Protein of unknown function (DUF2726) A3858_19505 PF06965 Na+/H+ antiporter 1 A3858_19505 PF13462 Thioredoxin A3858_19515 PF17841 BID domain of Bartonella effector protein (Bep) A3858_19515 PF01443 Viral (Superfamily 1) RNA helicase A3858_19515 PF03389 MobA/MobL family A3858_19540 PF06067 Domain of unknown function (DUF932) A3858_19590 PF03743 Bacterial conjugation TrbI-like protein A3858_19625 PF06834 TraU protein A3858_19635 PF06986 Type-1V conjugative transfer system mating pair stabilisation A3858_19655 PF06122 Conjugative relaxosome accessory transposon protein A3858_19665 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) A3858_19665 PF06594 Haemolysin-type calcium binding protein related domain A3858_19710 PF01746 tRNA (Guanine-1)-methyltransferase A3858_19715 PF10881 Protein of unknown function (DUF2726) A3858_19730 PF13462 Thioredoxin A3858_19730 PF06965 Na+/H+ antiporter 1 A3858_19740 PF17841 BID domain of Bartonella effector protein (Bep) A3858_19740 PF03389 MobA/MobL family A3858_19740 PF01443 Viral (Superfamily 1) RNA helicase A3858_19820 PF13817 IS66 C-terminal element A3858_19820 PF13005 zinc-finger binding domain of transposase IS66 A3858_19820 PF13007 Transposase C of IS166 homeodomain A3858_19820 PF03050 Transposase IS66 family A3858_19825 PF01810 LysE type translocator A3858_19855 PF00682 HMGL-like A3858_19865 PF01053 Cys/Met metabolism PLP-dependent enzyme A3858_19880 PF13005 zinc-finger binding domain of transposase IS66 A3858_19880 PF13817 IS66 C-terminal element A3858_19880 PF13007 Transposase C of IS166 homeodomain A3858_19880 PF03050 Transposase IS66 family A3858_19890 PF01527 Transposase A3858_19910 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system A3858_19945 PF13817 IS66 C-terminal element A3858_19945 PF13007 Transposase C of IS166 homeodomain A3858_19945 PF03050 Transposase IS66 family A3858_19945 PF13005 zinc-finger binding domain of transposase IS66 A3858_19960 PF13614 AAA domain A3858_19975 PF00239 Resolvase, N terminal domain A3858_19985 PF03707 Bacterial signalling protein N terminal repeat A3858_19985 PF00563 EAL domain A3858_19985 PF00990 Diguanylate cyclase, GGDEF domain A3858_19995 PF12282 Signal transduction histidine kinase A3858_19995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3858_19995 PF07568 Histidine kinase A3858_20000 PF00072 Response regulator receiver domain A3858_20000 PF03861 ANTAR domain A3858_20005 PF00916 Sulfate permease family A3858_20005 PF01740 STAS domain A3858_20010 PF00582 Universal stress protein family A3858_20015 PF01258 Prokaryotic dksA/traR C4-type zinc finger A3858_20025 PF01022 Bacterial regulatory protein, arsR family A3858_20030 PF03773 Predicted permease A3858_20045 PF00694 Aconitase C-terminal domain A3858_20045 PF00330 Aconitase family (aconitate hydratase) A3858_20065 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain A3858_20065 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain A3858_20125 PF03743 Bacterial conjugation TrbI-like protein A3858_20160 PF06834 TraU protein A3858_20170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A3858_20170 PF02874 ATP synthase alpha/beta family, beta-barrel domain A3858_20175 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain A3858_20190 PF00119 ATP synthase A chain A3858_20195 PF00137 ATP synthase subunit C A3858_20205 PF00306 ATP synthase alpha/beta chain, C terminal domain A3858_20205 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A3858_20210 PF00231 ATP synthase A3858_20250 PF13817 IS66 C-terminal element A3858_20250 PF13007 Transposase C of IS166 homeodomain A3858_20250 PF13005 zinc-finger binding domain of transposase IS66 A3858_20250 PF03050 Transposase IS66 family A3858_20265 PF02311 AraC-like ligand binding domain A3858_20265 PF12833 Helix-turn-helix domain A3858_20270 PF09278 MerR, DNA binding A3858_20270 PF00376 MerR family regulatory protein A3858_20275 PF01545 Cation efflux family A3858_20290 PF07715 TonB-dependent Receptor Plug Domain A3858_20290 PF00593 TonB dependent receptor A3858_20300 PF01032 FecCD transport family A3858_20305 PF00005 ABC transporter A3858_20325 PF01810 LysE type translocator A3858_20335 PF12697 Alpha/beta hydrolase family A3858_20340 PF09278 MerR, DNA binding A3858_20340 PF00376 MerR family regulatory protein A3858_20345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_20345 PF03466 LysR substrate binding domain A3858_20355 PF00582 Universal stress protein family A3858_20360 PF01740 STAS domain A3858_20360 PF00916 Sulfate permease family A3858_20370 PF14760 Rnk N-terminus A3858_20370 PF01272 Transcription elongation factor, GreA/GreB, C-term A3858_20375 PF00392 Bacterial regulatory proteins, gntR family A3858_20375 PF07729 FCD domain A3858_20380 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A3858_20385 PF00528 Binding-protein-dependent transport system inner membrane component A3858_20390 PF00528 Binding-protein-dependent transport system inner membrane component A3858_20390 PF12911 N-terminal TM domain of oligopeptide transport permease C A3858_20405 PF13378 Enolase C-terminal domain-like A3858_20405 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain A3858_20410 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family A3858_20420 PF13378 Enolase C-terminal domain-like A3858_20420 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain A3858_20425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A3858_20425 PF00005 ABC transporter A3858_20430 PF00005 ABC transporter A3858_20430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A3858_20440 PF07378 Flagellar protein FlbT A3858_20450 PF00700 Bacterial flagellin C-terminal helical region A3858_20450 PF00669 Bacterial flagellin N-terminal helical region A3858_20465 PF07729 FCD domain A3858_20465 PF00392 Bacterial regulatory proteins, gntR family A3858_20470 PF03459 TOBE domain A3858_20470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_20475 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain A3858_20475 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain A3858_20490 PF00528 Binding-protein-dependent transport system inner membrane component A3858_20495 PF00005 ABC transporter A3858_20495 PF03459 TOBE domain A3858_20505 PF02627 Carboxymuconolactone decarboxylase family A3858_20515 PF02082 Transcriptional regulator A3858_20530 PF03466 LysR substrate binding domain A3858_20530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_20540 PF00528 Binding-protein-dependent transport system inner membrane component A3858_20545 PF00528 Binding-protein-dependent transport system inner membrane component A3858_20550 PF12857 TOBE-like domain A3858_20550 PF00005 ABC transporter A3858_20555 PF01037 Lrp/AsnC ligand binding domain A3858_20555 PF13404 AsnC-type helix-turn-helix domain A3858_20560 PF03458 UPF0126 domain A3858_20580 PF03412 Peptidase C39 family A3858_20580 PF00664 ABC transporter transmembrane region A3858_20580 PF00005 ABC transporter A3858_20595 PF00793 DAHP synthetase I family A3858_20610 PF00483 Nucleotidyl transferase A3858_20615 PF04321 RmlD substrate binding domain A3858_20620 PF16363 GDP-mannose 4,6 dehydratase A3858_20625 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase A3858_20635 PF10134 Replication initiator protein A A3858_20640 PF00376 MerR family regulatory protein A3858_20640 PF13614 AAA domain A3858_20650 PF00005 ABC transporter A3858_20665 PF14307 Glycosyltransferase WbsX A3858_20665 PF05045 Rhamnan synthesis protein F A3858_20720 PF04940 Sensors of blue-light using FAD A3858_20720 PF00563 EAL domain A3858_20725 PF07804 HipA-like C-terminal domain A3858_20725 PF13657 HipA N-terminal domain A3858_20745 PF00816 H-NS histone family A3858_20760 PF01050 Mannose-6-phosphate isomerase A3858_20760 PF00483 Nucleotidyl transferase A3858_20765 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III A3858_20765 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain A3858_20765 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I A3858_20765 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II A3858_20790 PF00196 Bacterial regulatory proteins, luxR family A3858_20790 PF00072 Response regulator receiver domain A3858_20800 PF00196 Bacterial regulatory proteins, luxR family A3858_20800 PF00072 Response regulator receiver domain A3858_20830 PF00004 ATPase family associated with various cellular activities (AAA) A3858_20830 PF02190 ATP-dependent protease La (LON) substrate-binding domain A3858_20830 PF05362 Lon protease (S16) C-terminal proteolytic domain A3858_20880 PF03264 NapC/NirT cytochrome c family, N-terminal region A3858_20885 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) A3858_20890 PF00384 Molybdopterin oxidoreductase A3858_20890 PF04879 Molybdopterin oxidoreductase Fe4S4 domain A3858_20890 PF01568 Molydopterin dinucleotide binding domain A3858_20895 PF03927 NapD protein A3858_20905 PF06796 Periplasmic nitrate reductase protein NapE A3858_20915 PF00563 EAL domain A3858_20915 PF03707 Bacterial signalling protein N terminal repeat A3858_20915 PF00990 Diguanylate cyclase, GGDEF domain A3858_20925 PF00239 Resolvase, N terminal domain A3858_20935 PF13614 AAA domain A3858_20960 PF16363 GDP-mannose 4,6 dehydratase A3858_20965 PF01370 NAD dependent epimerase/dehydratase family A3858_20970 PF07508 Recombinase A3858_20970 PF13408 Recombinase zinc beta ribbon domain A3858_20970 PF00239 Resolvase, N terminal domain A3858_21005 PF14602 Hexapeptide repeat of succinyl-transferase A3858_21005 PF12464 Maltose acetyltransferase A3858_21025 PF18412 Outer-membrane lipoprotein Wza C-terminal domain A3858_21025 PF10531 SLBB domain A3858_21025 PF02563 Polysaccharide biosynthesis/export protein A3858_21030 PF01451 Low molecular weight phosphotyrosine protein phosphatase A3858_21035 PF02706 Chain length determinant protein A3858_21035 PF13807 G-rich domain on putative tyrosine kinase A3858_21035 PF13614 AAA domain A3858_21045 PF01757 Acyltransferase family A3858_21070 PF00689 Cation transporting ATPase, C-terminus A3858_21070 PF00690 Cation transporter/ATPase, N-terminus A3858_21075 PF01850 PIN domain A3858_21080 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin A3858_21170 PF03466 LysR substrate binding domain A3858_21170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_21175 PF00355 Rieske [2Fe-2S] domain A3858_21175 PF00848 Ring hydroxylating alpha subunit (catalytic domain) A3858_21195 PF13581 Histidine kinase-like ATPase domain A3858_21195 PF13426 PAS domain A3858_21195 PF07536 HWE histidine kinase A3858_21200 PF07689 KaiB domain A3858_21205 PF06745 KaiC A3858_21230 PF01370 NAD dependent epimerase/dehydratase family A3858_21250 PF04239 Protein of unknown function (DUF421) A3858_21270 PF01965 DJ-1/PfpI family A3858_21270 PF12833 Helix-turn-helix domain A3858_21275 PF04069 Substrate binding domain of ABC-type glycine betaine transport system A3858_21280 PF00528 Binding-protein-dependent transport system inner membrane component A3858_21285 PF00571 CBS domain A3858_21285 PF00005 ABC transporter A3858_21295 PF00701 Dihydrodipicolinate synthetase family A3858_21300 PF00171 Aldehyde dehydrogenase family A3858_21320 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain A3858_21320 PF13378 Enolase C-terminal domain-like A3858_21325 PF06253 Trimethylamine methyltransferase (MTTB) A3858_21330 PF01515 Phosphate acetyl/butaryl transferase A3858_21335 PF03601 Conserved hypothetical protein 698 A3858_21340 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain A3858_21340 PF00205 Thiamine pyrophosphate enzyme, central domain A3858_21340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain A3858_21345 PF01266 FAD dependent oxidoreductase A3858_21355 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component A3858_21365 PF03480 Bacterial extracellular solute-binding protein, family 7 A3858_21370 PF00392 Bacterial regulatory proteins, gntR family A3858_21370 PF00155 Aminotransferase class I and II A3858_21375 PF08448 PAS fold A3858_21375 PF00990 Diguanylate cyclase, GGDEF domain A3858_21385 PF03466 LysR substrate binding domain A3858_21385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_21390 PF00206 Lyase A3858_21390 PF10415 Fumarase C C-terminus A3858_21395 PF11800 Replication protein C C-terminal region A3858_21395 PF03428 Replication protein C N-terminal domain A3858_21400 PF07506 RepB plasmid partitioning protein A3858_21400 PF02195 ParB-like nuclease domain A3858_21405 PF13614 AAA domain A3858_21415 PF07690 Major Facilitator Superfamily A3858_21420 PF05145 Transition state regulatory protein AbrB A3858_21430 PF01757 Acyltransferase family A3858_21435 PF00294 pfkB family carbohydrate kinase A3858_21440 PF01791 DeoC/LacD family aldolase A3858_21445 PF00180 Isocitrate/isopropylmalate dehydrogenase A3858_21450 PF00171 Aldehyde dehydrogenase family A3858_21455 PF00107 Zinc-binding dehydrogenase A3858_21455 PF08240 Alcohol dehydrogenase GroES-like domain A3858_21460 PF08402 TOBE domain A3858_21460 PF00005 ABC transporter A3858_21465 PF00528 Binding-protein-dependent transport system inner membrane component A3858_21470 PF00528 Binding-protein-dependent transport system inner membrane component A3858_21480 PF00455 DeoR C terminal sensor domain A3858_21480 PF08220 DeoR-like helix-turn-helix domain A3858_21495 PF00356 Bacterial regulatory proteins, lacI family A3858_21510 PF00528 Binding-protein-dependent transport system inner membrane component A3858_21515 PF00528 Binding-protein-dependent transport system inner membrane component A3858_21525 PF00294 pfkB family carbohydrate kinase A3858_21530 PF01266 FAD dependent oxidoreductase A3858_21535 PF17912 MalK OB fold domain A3858_21535 PF03459 TOBE domain A3858_21535 PF00005 ABC transporter A3858_21540 PF07702 UTRA domain A3858_21540 PF00392 Bacterial regulatory proteins, gntR family A3858_21545 PF17763 Glutaminase/Asparaginase C-terminal domain A3858_21545 PF00710 Asparaginase, N-terminal A3858_21550 PF00005 ABC transporter A3858_21560 PF00528 Binding-protein-dependent transport system inner membrane component A3858_21565 PF00528 Binding-protein-dependent transport system inner membrane component A3858_21575 PF14698 Argininosuccinate lyase C-terminal A3858_21575 PF00206 Lyase A3858_21585 PF01613 Flavin reductase like domain A3858_21600 PF03466 LysR substrate binding domain A3858_21600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3858_21610 PF12146 Serine aminopeptidase, S33 A3858_21620 PF00005 ABC transporter A3858_21625 PF00005 ABC transporter A3858_21625 PF12399 Branched-chain amino acid ATP-binding cassette transporter A3858_21630 PF02653 Branched-chain amino acid transport system / permease component A3858_21630 PF11862 Domain of unknown function (DUF3382) A3858_21635 PF02653 Branched-chain amino acid transport system / permease component A3858_21645 PF05853 beta-keto acid cleavage enzyme A3858_21650 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain A3858_21650 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain A3858_21655 PF00392 Bacterial regulatory proteins, gntR family A3858_21655 PF07729 FCD domain A3858_21665 PF01037 Lrp/AsnC ligand binding domain A3858_21720 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain A3858_21720 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain A3858_21725 PF01116 Fructose-bisphosphate aldolase class-II A3858_21730 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain A3858_21730 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain A3858_21740 PF00485 Phosphoribulokinase / Uridine kinase family