A3858_00060 SM00829 Enoylreductase A3858_00070 SM00382 ATPases associated with a variety of cellular activities A3858_00075 SM00382 ATPases associated with a variety of cellular activities A3858_00115 SM00382 ATPases associated with a variety of cellular activities A3858_00135 SM00420 helix_turn_helix, Deoxyribose operon repressor A3858_00135 SM01134 A3858_00135 A3858_00160 SM00382 ATPases associated with a variety of cellular activities A3858_00230 SM00478 endonuclease III A3858_00290 SM00382 ATPases associated with a variety of cellular activities A3858_00320 SM00487 DEAD-like helicases superfamily A3858_00320 SM00490 helicase superfamily c-terminal domain A3858_00345 SM00464 Found in ATP-dependent protease La (LON) A3858_00370 SM00843 A3858_00370 A3858_00385 SM00992 Hemimethylated DNA-binding protein YccV like A3858_00480 SM00996 S-adenosyl-L-homocysteine hydrolase A3858_00480 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain A3858_00495 SM00528 Domain in histone-like proteins of HNS family A3858_00500 SM00448 cheY-homologous receiver domain A3858_00510 SM00387 Histidine kinase-like ATPases A3858_00510 SM00388 His Kinase A (phosphoacceptor) domain A3858_00560 SM00382 ATPases associated with a variety of cellular activities A3858_00560 SM01086 C-terminal, D2-small domain, of ClpB protein A3858_00615 SM00382 ATPases associated with a variety of cellular activities A3858_00655 SM00346 helix_turn_helix isocitrate lyase regulation A3858_00695 SM01329 A3858_00695 A3858_00725 SM01034 Sensors of blue-light using FAD A3858_00735 SM00091 PAS domain A3858_00735 SM00387 Histidine kinase-like ATPases A3858_00735 SM00388 His Kinase A (phosphoacceptor) domain A3858_00735 SM00448 cheY-homologous receiver domain A3858_00740 SM01230 A3858_00740 A3858_00755 SM01001 AIR carboxylase A3858_00790 SM00344 helix_turn_helix ASNC type A3858_00820 SM00448 cheY-homologous receiver domain A3858_00825 SM00073 Histidine Phosphotransfer domain A3858_00825 SM00260 Two component signalling adaptor domain A3858_00825 SM00387 Histidine kinase-like ATPases A3858_00825 SM01231 A3858_00825 A3858_00830 SM00260 Two component signalling adaptor domain A3858_00835 SM00260 Two component signalling adaptor domain A3858_00840 SM00138 Methyltransferase, chemotaxis proteins A3858_00845 SM00448 cheY-homologous receiver domain A3858_00860 SM00382 ATPases associated with a variety of cellular activities A3858_00860 SM00448 cheY-homologous receiver domain A3858_00875 SM00919 Malic enzyme, NAD binding domain A3858_00875 SM01274 A3858_00875 A3858_00885 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain A3858_00945 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_00945 SM00895 A3858_00945 A3858_00950 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_00950 SM00895 A3858_00950 A3858_00965 SM00858 A3858_00965 A3858_00970 SM00387 Histidine kinase-like ATPases A3858_00975 SM00382 ATPases associated with a variety of cellular activities A3858_00975 SM00448 cheY-homologous receiver domain A3858_01035 SM00911 HWE histidine kinase A3858_01040 SM00448 cheY-homologous receiver domain A3858_01150 SM00507 HNH nucleases A3858_01195 SM00470 ParB-like nuclease domain A3858_01215 SM00354 helix_turn _helix lactose operon repressor A3858_01245 SM01409 A3858_01245 A3858_01250 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. A3858_01250 SM00954 Region found in RelA / SpoT proteins A3858_01275 SM00358 Double-stranded RNA binding motif A3858_01275 SM00535 Ribonuclease III family A3858_01305 SM00448 cheY-homologous receiver domain A3858_01305 SM00862 Transcriptional regulatory protein, C terminal A3858_01310 SM00387 Histidine kinase-like ATPases A3858_01310 SM00388 His Kinase A (phosphoacceptor) domain A3858_01350 SM00893 Electron transfer flavoprotein domain A3858_01355 SM00893 Electron transfer flavoprotein domain A3858_01370 SM00822 A3858_01370 A3858_01375 SM00287 Bacterial SH3 domain homologues A3858_01380 SM00434 DNA Topoisomerase IV A3858_01410 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. A3858_01410 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. A3858_01415 SM00649 Ribosomal protein L11/L12 A3858_01440 SM00663 RNA polymerase I subunit A N-terminus A3858_01460 SM00838 Elongation factor G C-terminus A3858_01460 SM00889 Elongation factor G, domain IV A3858_01470 SM01403 A3858_01470 A3858_01490 SM01382 A3858_01490 A3858_01490 SM01383 A3858_01490 A3858_01505 SM00322 K homology RNA-binding domain A3858_01525 SM01374 A3858_01525 A3858_01530 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. A3858_01595 SM00662 RNA polymerases D A3858_01605 SM00421 helix_turn_helix, Lux Regulon A3858_01610 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. A3858_01615 SM00382 ATPases associated with a variety of cellular activities A3858_01625 SM00363 S4 RNA-binding domain A3858_01635 SM00062 Bacterial periplasmic substrate-binding proteins A3858_01650 SM00382 ATPases associated with a variety of cellular activities A3858_01705 SM00873 B3/4 domain A3858_01705 SM00874 tRNA synthetase B5 domain A3858_01705 SM00896 Ferredoxin-fold anticodon binding domain A3858_01750 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain A3858_01765 SM00871 Bacterial transcription activator, effector binding domain A3858_01830 SM00448 cheY-homologous receiver domain A3858_01835 SM00354 helix_turn _helix lactose operon repressor A3858_01860 SM00422 helix_turn_helix, mercury resistance A3858_01890 SM01323 A3858_01890 A3858_01910 SM00382 ATPases associated with a variety of cellular activities A3858_01965 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. A3858_01990 SM00382 ATPases associated with a variety of cellular activities A3858_02005 SM00899 A3858_02005 A3858_02010 SM00899 A3858_02010 A3858_02030 SM00852 Probable molybdopterin binding domain A3858_02035 SM00829 Enoylreductase A3858_02105 SM00903 Flavin reductase like domain A3858_02130 SM00382 ATPases associated with a variety of cellular activities A3858_02130 SM00962 SRP54-type protein, GTPase domain A3858_02130 SM00963 SRP54-type protein, helical bundle domain A3858_02150 SM01209 A3858_02150 A3858_02150 SM01210 A3858_02150 A3858_02165 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. A3858_02220 SM00905 Dihydroneopterin aldolase A3858_02245 SM00344 helix_turn_helix ASNC type A3858_02250 SM00344 helix_turn_helix ASNC type A3858_02275 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_02275 SM00895 A3858_02275 A3858_02290 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain A3858_02325 SM00382 ATPases associated with a variety of cellular activities A3858_02370 SM00829 Enoylreductase A3858_02375 SM00530 Helix-turn-helix XRE-family like proteins A3858_02400 SM00116 Domain in cystathionine beta-synthase and other proteins. A3858_02400 SM00924 MgtE intracellular N domain A3858_02425 SM00028 Tetratricopeptide repeats A3858_02460 SM00858 A3858_02460 A3858_02485 SM00882 Coenzyme A transferase A3858_02490 SM00882 Coenzyme A transferase A3858_02545 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_02550 SM00729 Elongator protein 3, MiaB family, Radical SAM A3858_02550 SM00876 Biotin and Thiamin Synthesis associated domain A3858_02560 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_02560 SM00895 A3858_02560 A3858_02590 SM00382 ATPases associated with a variety of cellular activities A3858_02595 SM00327 von Willebrand factor (vWF) type A domain A3858_02660 SM00344 helix_turn_helix ASNC type A3858_02695 SM00357 Cold shock protein domain A3858_02700 SM00100 Cyclic nucleotide-monophosphate binding domain A3858_02775 SM00474 3'-5' exonuclease A3858_02800 SM00327 von Willebrand factor (vWF) type A domain A3858_02820 SM00271 DnaJ molecular chaperone homology domain A3858_02845 SM00563 Phosphate acyltransferases A3858_02860 SM00845 GatB domain A3858_02880 SM00344 helix_turn_helix ASNC type A3858_02920 SM00852 Probable molybdopterin binding domain A3858_02995 SM00487 DEAD-like helicases superfamily A3858_02995 SM00490 helicase superfamily c-terminal domain A3858_02995 SM00847 Helicase associated domain (HA2) Add an annotation A3858_03005 SM00382 ATPases associated with a variety of cellular activities A3858_03055 SM00357 Cold shock protein domain A3858_03060 SM00342 helix_turn_helix, arabinose operon control protein A3858_03080 SM00911 HWE histidine kinase A3858_03125 SM00822 A3858_03125 A3858_03270 SM00507 HNH nucleases A3858_03305 SM00530 Helix-turn-helix XRE-family like proteins A3858_03330 SM00470 ParB-like nuclease domain A3858_03360 SM00487 DEAD-like helicases superfamily A3858_03360 SM00490 helicase superfamily c-terminal domain A3858_03390 SM00838 Elongation factor G C-terminus A3858_03400 SM00878 Biotin carboxylase C-terminal domain A3858_03515 SM00842 Cell division protein FtsA A3858_03520 SM00864 Tubulin/FtsZ family, GTPase domain A3858_03520 SM00865 Tubulin/FtsZ family, C-terminal domain A3858_03555 SM01018 B12 binding domain A3858_03560 SM00729 Elongator protein 3, MiaB family, Radical SAM A3858_03585 SM01211 A3858_03585 A3858_03590 SM00387 Histidine kinase-like ATPases A3858_03590 SM00388 His Kinase A (phosphoacceptor) domain A3858_03595 SM00382 ATPases associated with a variety of cellular activities A3858_03595 SM00448 cheY-homologous receiver domain A3858_03690 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain A3858_03740 SM00382 ATPases associated with a variety of cellular activities A3858_03750 SM00014 Acid phosphatase homologues A3858_03765 SM00344 helix_turn_helix ASNC type A3858_03815 SM00382 ATPases associated with a variety of cellular activities A3858_03830 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain A3858_03830 SM00437 Bacterial DNA topoisomerase I DNA-binding domain A3858_03830 SM00493 A3858_03830 A3858_03835 SM00382 ATPases associated with a variety of cellular activities A3858_03865 SM00318 Staphylococcal nuclease homologues A3858_03870 SM00530 Helix-turn-helix XRE-family like proteins A3858_03905 SM00878 Biotin carboxylase C-terminal domain A3858_03955 SM00422 helix_turn_helix, mercury resistance A3858_03960 SM00422 helix_turn_helix, mercury resistance A3858_04005 SM00382 ATPases associated with a variety of cellular activities A3858_04025 SM00932 Scaffold protein Nfu/NifU N terminal A3858_04060 SM00998 Adenylosuccinate lyase C-terminus A3858_04085 SM00642 Alpha-amylase domain A3858_04100 SM00091 PAS domain A3858_04100 SM00138 Methyltransferase, chemotaxis proteins A3858_04100 SM00911 HWE histidine kinase A3858_04105 SM00448 cheY-homologous receiver domain A3858_04115 SM00986 Uracil DNA glycosylase superfamily A3858_04115 SM00987 UreE urease accessory protein, C-terminal domain A3858_04120 SM00729 Elongator protein 3, MiaB family, Radical SAM A3858_04130 SM00347 helix_turn_helix multiple antibiotic resistance protein A3858_04155 SM00967 RNA 2'-O ribose methyltransferase substrate binding A3858_04160 SM00881 CoA binding domain A3858_04195 SM00838 Elongation factor G C-terminus A3858_04195 SM00889 Elongation factor G, domain IV A3858_04225 SM00382 ATPases associated with a variety of cellular activities A3858_04290 SM00363 S4 RNA-binding domain A3858_04300 SM00849 Metallo-beta-lactamase superfamily A3858_04325 SM00644 A3858_04325 A3858_04340 SM00382 ATPases associated with a variety of cellular activities A3858_04360 SM00382 ATPases associated with a variety of cellular activities A3858_04375 SM00387 Histidine kinase-like ATPases A3858_04375 SM00448 cheY-homologous receiver domain A3858_04380 SM00448 cheY-homologous receiver domain A3858_04380 SM00862 Transcriptional regulatory protein, C terminal A3858_04395 SM00363 S4 RNA-binding domain A3858_04395 SM01390 A3858_04395 A3858_04445 SM00382 ATPases associated with a variety of cellular activities A3858_04445 SM01086 C-terminal, D2-small domain, of ClpB protein A3858_04450 SM00849 Metallo-beta-lactamase superfamily A3858_04475 SM00382 ATPases associated with a variety of cellular activities A3858_04485 SM01400 A3858_04485 A3858_04500 SM00904 Riboflavin kinase A3858_04515 SM01131 A3858_04515 A3858_04525 SM00883 Chaperonin 10 Kd subunit A3858_04570 SM01230 A3858_04570 A3858_04630 SM00917 LeuA allosteric (dimerisation) domain A3858_04640 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. A3858_04685 SM00729 Elongator protein 3, MiaB family, Radical SAM A3858_04715 SM00357 Cold shock protein domain A3858_04780 SM00507 HNH nucleases A3858_04810 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_04810 SM00866 A3858_04810 A3858_04820 SM01007 Class II Aldolase and Adducin N-terminal domain A3858_04830 SM00382 ATPases associated with a variety of cellular activities A3858_04850 SM00822 A3858_04850 A3858_04880 SM00829 Enoylreductase A3858_04895 SM01060 A3858_04895 A3858_05005 SM00382 ATPases associated with a variety of cellular activities A3858_05030 SM00382 ATPases associated with a variety of cellular activities A3858_05040 SM00387 Histidine kinase-like ATPases A3858_05040 SM00388 His Kinase A (phosphoacceptor) domain A3858_05040 SM00448 cheY-homologous receiver domain A3858_05090 SM00460 Transglutaminase/protease-like homologues A3858_05110 SM00028 Tetratricopeptide repeats A3858_05120 SM00490 helicase superfamily c-terminal domain A3858_05125 SM00363 S4 RNA-binding domain A3858_05135 SM01058 CarD-like/TRCF domain A3858_05175 SM00448 cheY-homologous receiver domain A3858_05180 SM00138 Methyltransferase, chemotaxis proteins A3858_05185 SM00260 Two component signalling adaptor domain A3858_05190 SM00073 Histidine Phosphotransfer domain A3858_05190 SM00260 Two component signalling adaptor domain A3858_05190 SM00387 Histidine kinase-like ATPases A3858_05190 SM01231 A3858_05190 A3858_05195 SM00448 cheY-homologous receiver domain A3858_05220 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). A3858_05220 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain A3858_05225 SM00448 cheY-homologous receiver domain A3858_05235 SM00642 Alpha-amylase domain A3858_05240 SM00642 Alpha-amylase domain A3858_05245 SM00642 Alpha-amylase domain A3858_05250 SM00642 Alpha-amylase domain A3858_05255 SM00642 Alpha-amylase domain A3858_05265 SM00642 Alpha-amylase domain A3858_05285 SM00382 ATPases associated with a variety of cellular activities A3858_05295 SM00382 ATPases associated with a variety of cellular activities A3858_05305 SM01005 Alanine racemase, C-terminal domain A3858_05310 SM00822 A3858_05310 A3858_05320 SM00825 Beta-ketoacyl synthase A3858_05415 SM00971 Serine acetyltransferase, N-terminal A3858_05425 SM00861 Transketolase, pyrimidine binding domain A3858_05440 SM01133 A3858_05440 A3858_05480 SM01192 A3858_05480 A3858_05480 SM01193 A3858_05480 A3858_05565 SM00878 Biotin carboxylase C-terminal domain A3858_05610 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region A3858_05620 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region A3858_05680 SM00849 Metallo-beta-lactamase superfamily A3858_05685 SM00487 DEAD-like helicases superfamily A3858_05685 SM00490 helicase superfamily c-terminal domain A3858_05700 SM00382 ATPases associated with a variety of cellular activities A3858_05720 SM00382 ATPases associated with a variety of cellular activities A3858_05725 SM00257 Lysin motif A3858_05795 SM00382 ATPases associated with a variety of cellular activities A3858_05855 SM00100 Cyclic nucleotide-monophosphate binding domain A3858_05855 SM00419 helix_turn_helix, cAMP Regulatory protein A3858_05885 SM00564 beta-propeller repeat A3858_05895 SM00062 Bacterial periplasmic substrate-binding proteins A3858_05925 SM00382 ATPases associated with a variety of cellular activities A3858_05940 SM00849 Metallo-beta-lactamase superfamily A3858_05950 SM00421 helix_turn_helix, Lux Regulon A3858_05950 SM00448 cheY-homologous receiver domain A3858_05955 SM00897 FIST N domain A3858_05955 SM01204 A3858_05955 A3858_05960 SM00387 Histidine kinase-like ATPases A3858_05960 SM00388 His Kinase A (phosphoacceptor) domain A3858_05960 SM00448 cheY-homologous receiver domain A3858_05975 SM00382 ATPases associated with a variety of cellular activities A3858_05990 SM00448 cheY-homologous receiver domain A3858_05990 SM00862 Transcriptional regulatory protein, C terminal A3858_06000 SM00382 ATPases associated with a variety of cellular activities A3858_06025 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor A3858_06030 SM00903 Flavin reductase like domain A3858_06050 SM00422 helix_turn_helix, mercury resistance A3858_06055 SM00411 bacterial (prokaryotic) histone like domain A3858_06105 SM00448 cheY-homologous receiver domain A3858_06105 SM00862 Transcriptional regulatory protein, C terminal A3858_06110 SM00292 breast cancer carboxy-terminal domain A3858_06110 SM00532 Ligase N family A3858_06115 SM00487 DEAD-like helicases superfamily A3858_06115 SM00490 helicase superfamily c-terminal domain A3858_06140 SM00434 DNA Topoisomerase IV A3858_06255 SM00382 ATPases associated with a variety of cellular activities A3858_06285 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. A3858_06325 SM00382 ATPases associated with a variety of cellular activities A3858_06350 SM00564 beta-propeller repeat A3858_06365 SM00749 bacterial OsmY and nodulation domain A3858_06370 SM00448 cheY-homologous receiver domain A3858_06400 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. A3858_06410 SM00732 Likely ribonuclease with RNase H fold. A3858_06465 SM00382 ATPases associated with a variety of cellular activities A3858_06475 SM00564 beta-propeller repeat A3858_06485 SM00382 ATPases associated with a variety of cellular activities A3858_06535 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. A3858_06545 SM00935 Outer membrane protein (OmpH-like) A3858_06570 SM00382 ATPases associated with a variety of cellular activities A3858_06580 SM00344 helix_turn_helix ASNC type A3858_06600 SM00917 LeuA allosteric (dimerisation) domain A3858_06620 SM00478 endonuclease III A3858_06630 SM00507 HNH nucleases A3858_06635 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor A3858_06675 SM00450 Rhodanese Homology Domain A3858_06875 SM00825 Beta-ketoacyl synthase A3858_06885 SM01060 A3858_06885 A3858_06905 SM00729 Elongator protein 3, MiaB family, Radical SAM A3858_07005 SM00487 DEAD-like helicases superfamily A3858_07005 SM00490 helicase superfamily c-terminal domain A3858_07005 SM00982 A3858_07005 A3858_07005 SM01058 CarD-like/TRCF domain A3858_07015 SM01004 Delta-aminolevulinic acid dehydratase A3858_07055 SM00382 ATPases associated with a variety of cellular activities A3858_07055 SM00448 cheY-homologous receiver domain A3858_07060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain A3858_07060 SM00387 Histidine kinase-like ATPases A3858_07060 SM00388 His Kinase A (phosphoacceptor) domain A3858_07065 SM00382 ATPases associated with a variety of cellular activities A3858_07065 SM00448 cheY-homologous receiver domain A3858_07070 SM00091 PAS domain A3858_07070 SM00387 Histidine kinase-like ATPases A3858_07070 SM00388 His Kinase A (phosphoacceptor) domain A3858_07130 SM00833 Cobalamin synthesis protein cobW C-terminal domain A3858_07205 SM00116 Domain in cystathionine beta-synthase and other proteins. A3858_07205 SM01091 Transporter associated domain A3858_07235 SM00382 ATPases associated with a variety of cellular activities A3858_07260 SM00382 ATPases associated with a variety of cellular activities A3858_07260 SM00464 Found in ATP-dependent protease La (LON) A3858_07295 SM00382 ATPases associated with a variety of cellular activities A3858_07300 SM00829 Enoylreductase A3858_07365 SM00116 Domain in cystathionine beta-synthase and other proteins. A3858_07365 SM01240 A3858_07365 A3858_07375 SM00382 ATPases associated with a variety of cellular activities A3858_07405 SM01092 CO dehydrogenase flavoprotein C-terminal domain A3858_07410 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain A3858_07425 SM00387 Histidine kinase-like ATPases A3858_07425 SM00388 His Kinase A (phosphoacceptor) domain A3858_07425 SM00448 cheY-homologous receiver domain A3858_07430 SM00897 FIST N domain A3858_07430 SM01204 A3858_07430 A3858_07435 SM00421 helix_turn_helix, Lux Regulon A3858_07435 SM00448 cheY-homologous receiver domain A3858_07445 SM00642 Alpha-amylase domain A3858_07470 SM00422 helix_turn_helix, mercury resistance A3858_07485 SM00562 A3858_07485 A3858_07490 SM00382 ATPases associated with a variety of cellular activities A3858_07540 SM00650 Ribosomal RNA adenine dimethylases A3858_07555 SM00937 A3858_07555 A3858_07590 SM00387 Histidine kinase-like ATPases A3858_07590 SM00388 His Kinase A (phosphoacceptor) domain A3858_07610 SM00072 Guanylate kinase homologues. A3858_07630 SM00342 helix_turn_helix, arabinose operon control protein A3858_07640 SM00382 ATPases associated with a variety of cellular activities A3858_07645 SM00382 ATPases associated with a variety of cellular activities A3858_07680 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_07680 SM00866 A3858_07680 A3858_07705 SM00481 DNA polymerase alpha chain like domain A3858_07745 SM00836 DALR anticodon binding domain A3858_07745 SM01016 Arginyl tRNA synthetase N terminal dom A3858_07765 SM00859 Semialdehyde dehydrogenase, NAD binding domain A3858_07810 SM00861 Transketolase, pyrimidine binding domain A3858_07825 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain A3858_07835 SM00116 Domain in cystathionine beta-synthase and other proteins. A3858_07850 SM00100 Cyclic nucleotide-monophosphate binding domain A3858_07850 SM00419 helix_turn_helix, cAMP Regulatory protein A3858_07915 SM00937 A3858_07915 A3858_07925 SM00646 A3858_07925 A3858_08015 SM00857 Resolvase, N terminal domain A3858_08070 SM00382 ATPases associated with a variety of cellular activities A3858_08085 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_08120 SM00858 A3858_08120 A3858_08135 SM00822 A3858_08135 A3858_08145 SM00052 Putative diguanylate phosphodiesterase A3858_08145 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) A3858_08145 SM00091 PAS domain A3858_08145 SM00267 diguanylate cyclase A3858_08180 SM00858 A3858_08180 A3858_08195 SM00671 Sel1-like repeats. A3858_08230 SM00073 Histidine Phosphotransfer domain A3858_08230 SM00260 Two component signalling adaptor domain A3858_08235 SM00448 cheY-homologous receiver domain A3858_08240 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). A3858_08240 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain A3858_08250 SM00260 Two component signalling adaptor domain A3858_08255 SM00448 cheY-homologous receiver domain A3858_08260 SM00138 Methyltransferase, chemotaxis proteins A3858_08265 SM00260 Two component signalling adaptor domain A3858_08265 SM00387 Histidine kinase-like ATPases A3858_08265 SM01231 A3858_08265 A3858_08275 SM00382 ATPases associated with a variety of cellular activities A3858_08300 SM00382 ATPases associated with a variety of cellular activities A3858_08380 SM00382 ATPases associated with a variety of cellular activities A3858_08450 SM00091 PAS domain A3858_08450 SM00387 Histidine kinase-like ATPases A3858_08450 SM00388 His Kinase A (phosphoacceptor) domain A3858_08450 SM00448 cheY-homologous receiver domain A3858_08460 SM00421 helix_turn_helix, Lux Regulon A3858_08460 SM00448 cheY-homologous receiver domain A3858_08495 SM00382 ATPases associated with a variety of cellular activities A3858_08500 SM00822 A3858_08500 A3858_08550 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region A3858_08555 SM00926 Molybdopterin oxidoreductase Fe4S4 domain A3858_08555 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region A3858_08595 SM00155 Phospholipase D. Active site motifs. A3858_08625 SM00014 Acid phosphatase homologues A3858_08635 SM00421 helix_turn_helix, Lux Regulon A3858_08640 SM00421 helix_turn_helix, Lux Regulon A3858_08680 SM00382 ATPases associated with a variety of cellular activities A3858_08680 SM00930 A3858_08680 A3858_08705 SM00885 D5 N terminal like A3858_08760 SM00938 Nitrogen regulatory protein P-II A3858_08765 SM01230 A3858_08765 A3858_08770 SM00387 Histidine kinase-like ATPases A3858_08770 SM00448 cheY-homologous receiver domain A3858_08770 SM00911 HWE histidine kinase A3858_08775 SM00448 cheY-homologous receiver domain A3858_08780 SM00387 Histidine kinase-like ATPases A3858_08780 SM00388 His Kinase A (phosphoacceptor) domain A3858_08785 SM00382 ATPases associated with a variety of cellular activities A3858_08880 SM00387 Histidine kinase-like ATPases A3858_08880 SM00388 His Kinase A (phosphoacceptor) domain A3858_08890 SM00448 cheY-homologous receiver domain A3858_08895 SM00530 Helix-turn-helix XRE-family like proteins A3858_08985 SM00878 Biotin carboxylase C-terminal domain A3858_09010 SM00382 ATPases associated with a variety of cellular activities A3858_09010 SM00994 ClpX C4-type zinc finger A3858_09010 SM01086 C-terminal, D2-small domain, of ClpB protein A3858_09035 SM00382 ATPases associated with a variety of cellular activities A3858_09050 SM00849 Metallo-beta-lactamase superfamily A3858_09135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). A3858_09160 SM00487 DEAD-like helicases superfamily A3858_09160 SM00490 helicase superfamily c-terminal domain A3858_09195 SM00235 Zinc-dependent metalloprotease A3858_09215 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). A3858_09225 SM00729 Elongator protein 3, MiaB family, Radical SAM A3858_09250 SM01002 Alanine dehydrogenase/PNT, C-terminal domain A3858_09250 SM01003 Alanine dehydrogenase/PNT, N-terminal domain A3858_09280 SM00382 ATPases associated with a variety of cellular activities A3858_09290 SM00841 Elongation factor P, C-terminal A3858_09290 SM01185 A3858_09290 A3858_09320 SM00861 Transketolase, pyrimidine binding domain A3858_09415 SM00382 ATPases associated with a variety of cellular activities A3858_09420 SM00327 von Willebrand factor (vWF) type A domain A3858_09450 SM00989 A3858_09450 A3858_09455 SM00729 Elongator protein 3, MiaB family, Radical SAM A3858_09460 SM00091 PAS domain A3858_09540 SM00382 ATPases associated with a variety of cellular activities A3858_09545 SM00382 ATPases associated with a variety of cellular activities A3858_09575 SM00988 UreE urease accessory protein, N-terminal domain A3858_09640 SM00421 helix_turn_helix, Lux Regulon A3858_09645 SM00729 Elongator protein 3, MiaB family, Radical SAM A3858_09665 SM00327 von Willebrand factor (vWF) type A domain A3858_09695 SM00100 Cyclic nucleotide-monophosphate binding domain A3858_09695 SM00419 helix_turn_helix, cAMP Regulatory protein A3858_09705 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. A3858_09705 SM00267 diguanylate cyclase A3858_09730 SM00052 Putative diguanylate phosphodiesterase A3858_09730 SM00267 diguanylate cyclase A3858_09740 SM00046 Diacylglycerol kinase catalytic domain (presumed) A3858_09770 SM00382 ATPases associated with a variety of cellular activities A3858_09795 SM00382 ATPases associated with a variety of cellular activities A3858_09825 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. A3858_09830 SM00244 prohibitin homologues A3858_09835 SM00244 prohibitin homologues A3858_09875 SM00788 Adenylosuccinate synthetase A3858_09900 SM00382 ATPases associated with a variety of cellular activities A3858_09905 SM00062 Bacterial periplasmic substrate-binding proteins A3858_09905 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. A3858_09920 SM01230 A3858_09920 A3858_09930 SM01230 A3858_09930 A3858_09970 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain A3858_09975 SM00357 Cold shock protein domain A3858_10025 SM00400 zinc finger A3858_10025 SM00493 A3858_10025 A3858_10030 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase A3858_10080 SM00267 diguanylate cyclase A3858_10095 SM00880 A3858_10095 A3858_10100 SM00267 diguanylate cyclase A3858_10125 SM00267 diguanylate cyclase A3858_10125 SM00448 cheY-homologous receiver domain A3858_10145 SM00054 EF-hand, calcium binding motif A3858_10190 SM00100 Cyclic nucleotide-monophosphate binding domain A3858_10205 SM00382 ATPases associated with a variety of cellular activities A3858_10240 SM00382 ATPases associated with a variety of cellular activities A3858_10275 SM01329 A3858_10275 A3858_10285 SM00838 Elongation factor G C-terminus A3858_10300 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain A3858_10305 SM00382 ATPases associated with a variety of cellular activities A3858_10315 SM00387 Histidine kinase-like ATPases A3858_10315 SM00388 His Kinase A (phosphoacceptor) domain A3858_10315 SM00448 cheY-homologous receiver domain A3858_10325 SM00420 helix_turn_helix, Deoxyribose operon repressor A3858_10325 SM01134 A3858_10325 A3858_10330 SM00953 A3858_10330 A3858_10405 SM00155 Phospholipase D. Active site motifs. A3858_10420 SM01007 Class II Aldolase and Adducin N-terminal domain A3858_10435 SM00841 Elongation factor P, C-terminal A3858_10435 SM01185 A3858_10435 A3858_10480 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_10480 SM00895 A3858_10480 A3858_10490 SM00091 PAS domain A3858_10490 SM00387 Histidine kinase-like ATPases A3858_10490 SM00388 His Kinase A (phosphoacceptor) domain A3858_10570 SM00448 cheY-homologous receiver domain A3858_10590 SM00450 Rhodanese Homology Domain A3858_10595 SM00421 helix_turn_helix, Lux Regulon A3858_10595 SM00448 cheY-homologous receiver domain A3858_10600 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) A3858_10600 SM00091 PAS domain A3858_10600 SM00387 Histidine kinase-like ATPases A3858_10600 SM00388 His Kinase A (phosphoacceptor) domain A3858_10600 SM00448 cheY-homologous receiver domain A3858_10645 SM00829 Enoylreductase A3858_10655 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen A3858_10660 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen A3858_10780 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. A3858_10780 SM00382 ATPases associated with a variety of cellular activities A3858_10785 SM00450 Rhodanese Homology Domain A3858_10795 SM00936 Penicillin-binding protein 5, C-terminal domain A3858_10815 SM00382 ATPases associated with a variety of cellular activities A3858_10825 SM00278 Helix-hairpin-helix DNA-binding motif class 1 A3858_10850 SM00487 DEAD-like helicases superfamily A3858_10850 SM00490 helicase superfamily c-terminal domain A3858_10915 SM00479 A3858_10915 A3858_10920 SM00448 cheY-homologous receiver domain A3858_10930 SM00100 Cyclic nucleotide-monophosphate binding domain A3858_10930 SM00116 Domain in cystathionine beta-synthase and other proteins. A3858_10990 SM00382 ATPases associated with a variety of cellular activities A3858_11010 SM00357 Cold shock protein domain A3858_11065 SM00855 Phosphoglycerate mutase family A3858_11075 SM00487 DEAD-like helicases superfamily A3858_11100 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor A3858_11110 SM00829 Enoylreductase A3858_11115 SM00342 helix_turn_helix, arabinose operon control protein A3858_11135 SM00487 DEAD-like helicases superfamily A3858_11135 SM00490 helicase superfamily c-terminal domain A3858_11180 SM00226 Low molecular weight phosphatase family A3858_11250 SM00530 Helix-turn-helix XRE-family like proteins A3858_11260 SM00387 Histidine kinase-like ATPases A3858_11270 SM00382 ATPases associated with a variety of cellular activities A3858_11310 SM00984 UDP binding domain A3858_11335 SM00487 DEAD-like helicases superfamily A3858_11335 SM00490 helicase superfamily c-terminal domain A3858_11345 SM00850 LytTr DNA-binding domain A3858_11355 SM00830 Chorismate mutase type II A3858_11370 SM00382 ATPases associated with a variety of cellular activities A3858_11420 SM00382 ATPases associated with a variety of cellular activities A3858_11545 SM00100 Cyclic nucleotide-monophosphate binding domain A3858_11545 SM00419 helix_turn_helix, cAMP Regulatory protein A3858_11550 SM00729 Elongator protein 3, MiaB family, Radical SAM A3858_11560 SM00382 ATPases associated with a variety of cellular activities A3858_11610 SM00382 ATPases associated with a variety of cellular activities A3858_11620 SM00493 A3858_11620 A3858_11640 SM00829 Enoylreductase A3858_11670 SM00344 helix_turn_helix ASNC type A3858_11675 SM01002 Alanine dehydrogenase/PNT, C-terminal domain A3858_11675 SM01003 Alanine dehydrogenase/PNT, N-terminal domain A3858_11725 SM00382 ATPases associated with a variety of cellular activities A3858_11735 SM00563 Phosphate acyltransferases A3858_11775 SM00849 Metallo-beta-lactamase superfamily A3858_11800 SM00822 A3858_11800 A3858_11885 SM00347 helix_turn_helix multiple antibiotic resistance protein A3858_11895 SM00530 Helix-turn-helix XRE-family like proteins A3858_11920 SM00421 helix_turn_helix, Lux Regulon A3858_11930 SM00387 Histidine kinase-like ATPases A3858_11930 SM00433 TopoisomeraseII A3858_11940 SM00316 Ribosomal protein S1-like RNA-binding domain A3858_11940 SM00732 Likely ribonuclease with RNase H fold. A3858_11950 SM00382 ATPases associated with a variety of cellular activities A3858_11995 SM00271 DnaJ molecular chaperone homology domain A3858_12020 SM00729 Elongator protein 3, MiaB family, Radical SAM A3858_12075 SM00849 Metallo-beta-lactamase superfamily A3858_12080 SM01152 A3858_12080 A3858_12095 SM00382 ATPases associated with a variety of cellular activities A3858_12100 SM00382 ATPases associated with a variety of cellular activities A3858_12140 SM00448 cheY-homologous receiver domain A3858_12165 SM00851 MGS-like domain A3858_12165 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain A3858_12170 SM00487 DEAD-like helicases superfamily A3858_12170 SM00490 helicase superfamily c-terminal domain A3858_12230 SM00116 Domain in cystathionine beta-synthase and other proteins. A3858_12315 SM00448 cheY-homologous receiver domain A3858_12315 SM00862 Transcriptional regulatory protein, C terminal A3858_12380 SM01329 A3858_12380 A3858_12500 SM01130 A3858_12500 A3858_12510 SM00450 Rhodanese Homology Domain A3858_12525 SM00938 Nitrogen regulatory protein P-II A3858_12545 SM00382 ATPases associated with a variety of cellular activities A3858_12610 SM00382 ATPases associated with a variety of cellular activities A3858_12625 SM00421 helix_turn_helix, Lux Regulon A3858_12625 SM00448 cheY-homologous receiver domain A3858_12630 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) A3858_12630 SM00091 PAS domain A3858_12630 SM00387 Histidine kinase-like ATPases A3858_12630 SM00388 His Kinase A (phosphoacceptor) domain A3858_12655 SM00822 A3858_12655 A3858_12745 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. A3858_12745 SM00245 tail specific protease A3858_12760 SM00729 Elongator protein 3, MiaB family, Radical SAM A3858_12775 SM00642 Alpha-amylase domain A3858_12795 SM00382 ATPases associated with a variety of cellular activities A3858_12850 SM00460 Transglutaminase/protease-like homologues A3858_12860 SM00460 Transglutaminase/protease-like homologues A3858_12885 SM00382 ATPases associated with a variety of cellular activities A3858_12890 SM00829 Enoylreductase A3858_12915 SM00861 Transketolase, pyrimidine binding domain A3858_12920 SM00881 CoA binding domain A3858_12995 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_12995 SM00895 A3858_12995 A3858_13035 SM00382 ATPases associated with a variety of cellular activities A3858_13100 SM00986 Uracil DNA glycosylase superfamily A3858_13100 SM00987 UreE urease accessory protein, C-terminal domain A3858_13115 SM01207 A3858_13115 A3858_13160 SM01091 Transporter associated domain A3858_13170 SM00327 von Willebrand factor (vWF) type A domain A3858_13180 SM00020 Trypsin-like serine protease A3858_13240 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs A3858_13240 SM00474 3'-5' exonuclease A3858_13240 SM00475 5'-3' exonuclease A3858_13240 SM00482 DNA polymerase A domain A3858_13255 SM00478 endonuclease III A3858_13255 SM00525 A3858_13255 A3858_13260 SM00342 helix_turn_helix, arabinose operon control protein A3858_13270 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_13270 SM00895 A3858_13270 A3858_13300 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor A3858_13345 SM00830 Chorismate mutase type II A3858_13365 SM00382 ATPases associated with a variety of cellular activities A3858_13365 SM00962 SRP54-type protein, GTPase domain A3858_13365 SM00963 SRP54-type protein, helical bundle domain A3858_13385 SM00387 Histidine kinase-like ATPases A3858_13385 SM00388 His Kinase A (phosphoacceptor) domain A3858_13410 SM01234 A3858_13410 A3858_13420 SM00052 Putative diguanylate phosphodiesterase A3858_13420 SM00267 diguanylate cyclase A3858_13455 SM00855 Phosphoglycerate mutase family A3858_13475 SM00278 Helix-hairpin-helix DNA-binding motif class 1 A3858_13475 SM00465 GIY-YIG type nucleases (URI domain) A3858_13505 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region A3858_13510 SM00926 Molybdopterin oxidoreductase Fe4S4 domain A3858_13510 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region A3858_13535 SM00448 cheY-homologous receiver domain A3858_13535 SM00862 Transcriptional regulatory protein, C terminal A3858_13540 SM00773 Proposed nucleic acid binding domain A3858_13545 SM01002 Alanine dehydrogenase/PNT, C-terminal domain A3858_13545 SM01003 Alanine dehydrogenase/PNT, N-terminal domain A3858_13590 SM00853 MutL C terminal dimerisation domain A3858_13590 SM01340 A3858_13590 A3858_13615 SM00798 AICARFT/IMPCHase bienzyme A3858_13615 SM00851 MGS-like domain A3858_13665 SM01387 A3858_13665 A3858_13670 SM00316 Ribosomal protein S1-like RNA-binding domain A3858_13670 SM00322 K homology RNA-binding domain A3858_13705 SM00382 ATPases associated with a variety of cellular activities A3858_13725 SM00481 DNA polymerase alpha chain like domain A3858_13735 SM00316 Ribosomal protein S1-like RNA-binding domain A3858_13735 SM00955 A3858_13735 A3858_13775 SM00861 Transketolase, pyrimidine binding domain A3858_13795 SM00448 cheY-homologous receiver domain A3858_13795 SM00862 Transcriptional regulatory protein, C terminal A3858_13800 SM00347 helix_turn_helix multiple antibiotic resistance protein A3858_13865 SM00474 3'-5' exonuclease A3858_13870 SM00116 Domain in cystathionine beta-synthase and other proteins. A3858_13885 SM00382 ATPases associated with a variety of cellular activities A3858_13920 SM00316 Ribosomal protein S1-like RNA-binding domain A3858_13950 SM00957 SecA DEAD-like domain A3858_13950 SM00958 SecA preprotein cross-linking domain A3858_13965 SM00271 DnaJ molecular chaperone homology domain A3858_13995 SM00382 ATPases associated with a variety of cellular activities A3858_14060 SM00347 helix_turn_helix multiple antibiotic resistance protein A3858_14110 SM00382 ATPases associated with a variety of cellular activities A3858_14115 SM00382 ATPases associated with a variety of cellular activities A3858_14140 SM00331 Sigma factor PP2C-like phosphatases A3858_14140 SM00448 cheY-homologous receiver domain A3858_14180 SM00919 Malic enzyme, NAD binding domain A3858_14180 SM01274 A3858_14180 A3858_14185 SM00533 DNA-binding domain of DNA mismatch repair MUTS family A3858_14185 SM00534 ATPase domain of DNA mismatch repair MUTS family A3858_14215 SM00729 Elongator protein 3, MiaB family, Radical SAM A3858_14225 SM00470 ParB-like nuclease domain A3858_14240 SM01228 A3858_14240 A3858_14250 SM00357 Cold shock protein domain A3858_14250 SM00382 ATPases associated with a variety of cellular activities A3858_14250 SM00959 Rho termination factor, N-terminal domain A3858_14275 SM00479 A3858_14275 A3858_14290 SM00978 A3858_14290 A3858_14295 SM00925 MltA specific insert domain A3858_14300 SM00463 Small MutS-related domain A3858_14310 SM00354 helix_turn _helix lactose operon repressor A3858_14325 SM00382 ATPases associated with a variety of cellular activities A3858_14400 SM01034 Sensors of blue-light using FAD A3858_14405 SM00448 cheY-homologous receiver domain A3858_14430 SM00387 Histidine kinase-like ATPases A3858_14430 SM00388 His Kinase A (phosphoacceptor) domain A3858_14435 SM00448 cheY-homologous receiver domain A3858_14435 SM00862 Transcriptional regulatory protein, C terminal A3858_14445 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain A3858_14460 SM00448 cheY-homologous receiver domain A3858_14495 SM00382 ATPases associated with a variety of cellular activities A3858_14500 SM00961 Ribulose bisphosphate carboxylase, small chain A3858_14530 SM00382 ATPases associated with a variety of cellular activities A3858_14535 SM00382 ATPases associated with a variety of cellular activities A3858_14565 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. A3858_14570 SM00861 Transketolase, pyrimidine binding domain A3858_14635 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) A3858_14635 SM00091 PAS domain A3858_14635 SM00387 Histidine kinase-like ATPases A3858_14635 SM00388 His Kinase A (phosphoacceptor) domain A3858_14635 SM00448 cheY-homologous receiver domain A3858_14725 SM00858 A3858_14725 A3858_14760 SM00382 ATPases associated with a variety of cellular activities A3858_14800 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain A3858_14800 SM01232 A3858_14800 A3858_14815 SM00382 ATPases associated with a variety of cellular activities A3858_14815 SM00760 Bacterial dnaA protein helix-turn-helix domain A3858_14820 SM00480 DNA polymerase III beta subunit A3858_14825 SM00382 ATPases associated with a variety of cellular activities A3858_14835 SM00387 Histidine kinase-like ATPases A3858_14835 SM00433 TopoisomeraseII A3858_14880 SM00223 APPLE domain A3858_14880 SM01359 A3858_14880 A3858_14880 SM01360 A3858_14880 A3858_14885 SM00387 Histidine kinase-like ATPases A3858_14885 SM00388 His Kinase A (phosphoacceptor) domain A3858_14885 SM00448 cheY-homologous receiver domain A3858_14895 SM00341 Helicase and RNase D C-terminal A3858_14895 SM00487 DEAD-like helicases superfamily A3858_14895 SM00490 helicase superfamily c-terminal domain A3858_14895 SM00956 A3858_14895 A3858_14945 SM00822 A3858_14945 A3858_14955 SM00642 Alpha-amylase domain A3858_14980 SM00859 Semialdehyde dehydrogenase, NAD binding domain A3858_14985 SM00947 Carbonic anhydrase A3858_15035 SM00411 bacterial (prokaryotic) histone like domain A3858_15060 SM00382 ATPases associated with a variety of cellular activities A3858_15110 SM00244 prohibitin homologues A3858_15125 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family A3858_15140 SM00382 ATPases associated with a variety of cellular activities A3858_15140 SM01086 C-terminal, D2-small domain, of ClpB protein A3858_15145 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. A3858_15220 SM00857 Resolvase, N terminal domain A3858_15225 SM00470 ParB-like nuclease domain A3858_15230 SM00470 ParB-like nuclease domain A3858_15270 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase A3858_15295 SM00563 Phosphate acyltransferases A3858_15385 SM00327 von Willebrand factor (vWF) type A domain A3858_15425 SM00903 Flavin reductase like domain A3858_15465 SM00346 helix_turn_helix isocitrate lyase regulation A3858_15470 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_15485 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_15485 SM00895 A3858_15485 A3858_15500 SM00382 ATPases associated with a variety of cellular activities A3858_15505 SM00382 ATPases associated with a variety of cellular activities A3858_15520 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain A3858_15545 SM00382 ATPases associated with a variety of cellular activities A3858_15550 SM00421 helix_turn_helix, Lux Regulon A3858_15555 SM00387 Histidine kinase-like ATPases A3858_15555 SM00388 His Kinase A (phosphoacceptor) domain A3858_15555 SM00448 cheY-homologous receiver domain A3858_15560 SM00448 cheY-homologous receiver domain A3858_15560 SM00862 Transcriptional regulatory protein, C terminal A3858_15580 SM00852 Probable molybdopterin binding domain A3858_15585 SM00729 Elongator protein 3, MiaB family, Radical SAM A3858_15615 SM00347 helix_turn_helix multiple antibiotic resistance protein A3858_15625 SM00382 ATPases associated with a variety of cellular activities A3858_15660 SM00420 helix_turn_helix, Deoxyribose operon repressor A3858_15660 SM01134 A3858_15660 A3858_15745 SM00382 ATPases associated with a variety of cellular activities A3858_15755 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). A3858_15755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain A3858_15775 SM00387 Histidine kinase-like ATPases A3858_15775 SM00388 His Kinase A (phosphoacceptor) domain A3858_15780 SM00448 cheY-homologous receiver domain A3858_15780 SM00862 Transcriptional regulatory protein, C terminal A3858_15845 SM00052 Putative diguanylate phosphodiesterase A3858_15845 SM00267 diguanylate cyclase A3858_15875 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) A3858_15875 SM00091 PAS domain A3858_15875 SM00911 HWE histidine kinase A3858_15895 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). A3858_15895 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain A3858_15900 SM00347 helix_turn_helix multiple antibiotic resistance protein A3858_15985 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor A3858_16005 SM00220 Serine/Threonine protein kinases, catalytic domain A3858_16010 SM00240 Forkhead associated domain A3858_16015 SM00382 ATPases associated with a variety of cellular activities A3858_16035 SM00219 Tyrosine kinase, catalytic domain A3858_16135 SM00382 ATPases associated with a variety of cellular activities A3858_16160 SM00382 ATPases associated with a variety of cellular activities A3858_16180 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain A3858_16190 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_16190 SM00895 A3858_16190 A3858_16200 SM00382 ATPases associated with a variety of cellular activities A3858_16245 SM00825 Beta-ketoacyl synthase A3858_16260 SM00460 Transglutaminase/protease-like homologues A3858_16325 SM00849 Metallo-beta-lactamase superfamily A3858_16350 SM00900 A3858_16350 A3858_16380 SM00342 helix_turn_helix, arabinose operon control protein A3858_16385 SM00342 helix_turn_helix, arabinose operon control protein A3858_16395 SM01092 CO dehydrogenase flavoprotein C-terminal domain A3858_16400 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain A3858_16425 SM00382 ATPases associated with a variety of cellular activities A3858_16465 SM00387 Histidine kinase-like ATPases A3858_16465 SM00388 His Kinase A (phosphoacceptor) domain A3858_16480 SM00382 ATPases associated with a variety of cellular activities A3858_16490 SM00387 Histidine kinase-like ATPases A3858_16490 SM00911 HWE histidine kinase A3858_16540 SM00382 ATPases associated with a variety of cellular activities A3858_16555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain A3858_16555 SM00387 Histidine kinase-like ATPases A3858_16555 SM00388 His Kinase A (phosphoacceptor) domain A3858_16560 SM00448 cheY-homologous receiver domain A3858_16560 SM00862 Transcriptional regulatory protein, C terminal A3858_16565 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. A3858_16590 SM00382 ATPases associated with a variety of cellular activities A3858_16605 SM00382 ATPases associated with a variety of cellular activities A3858_16630 SM01012 A3858_16630 A3858_16680 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain A3858_16745 SM00382 ATPases associated with a variety of cellular activities A3858_16785 SM00382 ATPases associated with a variety of cellular activities A3858_16790 SM00382 ATPases associated with a variety of cellular activities A3858_16825 SM00448 cheY-homologous receiver domain A3858_16830 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). A3858_16830 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain A3858_16850 SM00773 Proposed nucleic acid binding domain A3858_16865 SM00342 helix_turn_helix, arabinose operon control protein A3858_16940 SM00382 ATPases associated with a variety of cellular activities A3858_16950 SM00421 helix_turn_helix, Lux Regulon A3858_16960 SM00226 Low molecular weight phosphatase family A3858_17025 SM00382 ATPases associated with a variety of cellular activities A3858_17030 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_17030 SM00895 A3858_17030 A3858_17055 SM00267 diguanylate cyclase A3858_17165 SM00267 diguanylate cyclase A3858_17165 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain A3858_17195 SM00382 ATPases associated with a variety of cellular activities A3858_17230 SM00829 Enoylreductase A3858_17245 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain A3858_17265 SM01329 A3858_17265 A3858_17270 SM01329 A3858_17270 A3858_17275 SM00382 ATPases associated with a variety of cellular activities A3858_17300 SM00382 ATPases associated with a variety of cellular activities A3858_17325 SM00267 diguanylate cyclase A3858_17330 SM00052 Putative diguanylate phosphodiesterase A3858_17330 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. A3858_17330 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) A3858_17330 SM00091 PAS domain A3858_17330 SM00267 diguanylate cyclase A3858_17345 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_17345 SM00895 A3858_17345 A3858_17360 SM01130 A3858_17360 A3858_17385 SM00382 ATPases associated with a variety of cellular activities A3858_17420 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). A3858_17470 SM00448 cheY-homologous receiver domain A3858_17470 SM00862 Transcriptional regulatory protein, C terminal A3858_17475 SM00387 Histidine kinase-like ATPases A3858_17475 SM00388 His Kinase A (phosphoacceptor) domain A3858_17480 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). A3858_17480 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain A3858_17545 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_17545 SM00895 A3858_17545 A3858_17560 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_17560 SM00895 A3858_17560 A3858_17565 SM00797 Allophanate hydrolase subunit 2 A3858_17570 SM00796 Allophanate hydrolase subunit 1 A3858_17600 SM01130 A3858_17600 A3858_17605 SM00062 Bacterial periplasmic substrate-binding proteins A3858_17610 SM00382 ATPases associated with a variety of cellular activities A3858_17645 SM00903 Flavin reductase like domain A3858_17685 SM00382 ATPases associated with a variety of cellular activities A3858_17685 SM01086 C-terminal, D2-small domain, of ClpB protein A3858_17730 SM00240 Forkhead associated domain A3858_17775 SM00331 Sigma factor PP2C-like phosphatases A3858_17775 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain A3858_17805 SM00671 Sel1-like repeats. A3858_17820 SM01007 Class II Aldolase and Adducin N-terminal domain A3858_17840 SM00382 ATPases associated with a variety of cellular activities A3858_17875 SM00448 cheY-homologous receiver domain A3858_17875 SM00862 Transcriptional regulatory protein, C terminal A3858_17880 SM00387 Histidine kinase-like ATPases A3858_17885 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. A3858_17885 SM00267 diguanylate cyclase A3858_17890 SM00342 helix_turn_helix, arabinose operon control protein A3858_17900 SM00382 ATPases associated with a variety of cellular activities A3858_17920 SM00382 ATPases associated with a variety of cellular activities A3858_17995 SM00829 Enoylreductase A3858_18065 SM00481 DNA polymerase alpha chain like domain A3858_18075 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain A3858_18085 SM00382 ATPases associated with a variety of cellular activities A3858_18120 SM00641 Glycosyl hydrolases family 25 A3858_18135 SM00382 ATPases associated with a variety of cellular activities A3858_18215 SM00382 ATPases associated with a variety of cellular activities A3858_18250 SM00411 bacterial (prokaryotic) histone like domain A3858_18255 SM00316 Ribosomal protein S1-like RNA-binding domain A3858_18290 SM00116 Domain in cystathionine beta-synthase and other proteins. A3858_18290 SM01091 Transporter associated domain A3858_18305 SM00729 Elongator protein 3, MiaB family, Radical SAM A3858_18315 SM00382 ATPases associated with a variety of cellular activities A3858_18330 SM00450 Rhodanese Homology Domain A3858_18365 SM00470 ParB-like nuclease domain A3858_18425 SM01068 Putative carbohydrate binding domain A3858_18445 SM00100 Cyclic nucleotide-monophosphate binding domain A3858_18445 SM00419 helix_turn_helix, cAMP Regulatory protein A3858_18470 SM00357 Cold shock protein domain A3858_18475 SM00357 Cold shock protein domain A3858_18635 SM01130 A3858_18635 A3858_18675 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_18675 SM00895 A3858_18675 A3858_18685 SM00421 helix_turn_helix, Lux Regulon A3858_18690 SM00710 Parallel beta-helix repeats A3858_18730 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_18730 SM00895 A3858_18730 A3858_18735 SM00382 ATPases associated with a variety of cellular activities A3858_18765 SM00421 helix_turn_helix, Lux Regulon A3858_18780 SM00354 helix_turn _helix lactose operon repressor A3858_18790 SM00382 ATPases associated with a variety of cellular activities A3858_18830 SM00382 ATPases associated with a variety of cellular activities A3858_18850 SM00354 helix_turn _helix lactose operon repressor A3858_18860 SM00382 ATPases associated with a variety of cellular activities A3858_18885 SM00100 Cyclic nucleotide-monophosphate binding domain A3858_18890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). A3858_18890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain A3858_18965 SM00387 Histidine kinase-like ATPases A3858_18995 SM01134 A3858_18995 A3858_19005 SM00382 ATPases associated with a variety of cellular activities A3858_19030 SM01133 A3858_19030 A3858_19040 SM00062 Bacterial periplasmic substrate-binding proteins A3858_19055 SM00382 ATPases associated with a variety of cellular activities A3858_19090 SM00953 A3858_19090 A3858_19255 SM00760 Bacterial dnaA protein helix-turn-helix domain A3858_19285 SM00530 Helix-turn-helix XRE-family like proteins A3858_19420 SM00470 ParB-like nuclease domain A3858_19515 SM00382 ATPases associated with a variety of cellular activities A3858_19670 SM00530 Helix-turn-helix XRE-family like proteins A3858_19740 SM00382 ATPases associated with a variety of cellular activities A3858_19955 SM00470 ParB-like nuclease domain A3858_19975 SM00857 Resolvase, N terminal domain A3858_19985 SM00052 Putative diguanylate phosphodiesterase A3858_19985 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. A3858_19985 SM00267 diguanylate cyclase A3858_19995 SM00387 Histidine kinase-like ATPases A3858_20000 SM00448 cheY-homologous receiver domain A3858_20025 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor A3858_20060 SM00226 Low molecular weight phosphatase family A3858_20060 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor A3858_20065 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain A3858_20170 SM00382 ATPases associated with a variety of cellular activities A3858_20265 SM00342 helix_turn_helix, arabinose operon control protein A3858_20270 SM00422 helix_turn_helix, mercury resistance A3858_20290 SM00965 Secretin and TonB N terminus short domain A3858_20305 SM00382 ATPases associated with a variety of cellular activities A3858_20320 SM00342 helix_turn_helix, arabinose operon control protein A3858_20340 SM00422 helix_turn_helix, mercury resistance A3858_20375 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_20375 SM00895 A3858_20375 A3858_20405 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain A3858_20420 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain A3858_20425 SM00382 ATPases associated with a variety of cellular activities A3858_20430 SM00382 ATPases associated with a variety of cellular activities A3858_20465 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_20465 SM00895 A3858_20465 A3858_20495 SM00382 ATPases associated with a variety of cellular activities A3858_20550 SM00382 ATPases associated with a variety of cellular activities A3858_20555 SM00344 helix_turn_helix ASNC type A3858_20565 SM00237 Domains in Na-Ca exchangers and integrin-beta4 A3858_20575 SM00028 Tetratricopeptide repeats A3858_20580 SM00382 ATPases associated with a variety of cellular activities A3858_20645 SM00470 ParB-like nuclease domain A3858_20650 SM00382 ATPases associated with a variety of cellular activities A3858_20720 SM01034 Sensors of blue-light using FAD A3858_20730 SM00530 Helix-turn-helix XRE-family like proteins A3858_20745 SM00528 Domain in histone-like proteins of HNS family A3858_20750 SM00528 Domain in histone-like proteins of HNS family A3858_20785 SM00421 helix_turn_helix, Lux Regulon A3858_20790 SM00421 helix_turn_helix, Lux Regulon A3858_20790 SM00448 cheY-homologous receiver domain A3858_20800 SM00421 helix_turn_helix, Lux Regulon A3858_20800 SM00448 cheY-homologous receiver domain A3858_20825 SM00773 Proposed nucleic acid binding domain A3858_20830 SM00382 ATPases associated with a variety of cellular activities A3858_20890 SM00926 Molybdopterin oxidoreductase Fe4S4 domain A3858_20915 SM00052 Putative diguanylate phosphodiesterase A3858_20915 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. A3858_20915 SM00267 diguanylate cyclase A3858_20925 SM00857 Resolvase, N terminal domain A3858_20930 SM00470 ParB-like nuclease domain A3858_20970 SM00857 Resolvase, N terminal domain A3858_21030 SM00226 Low molecular weight phosphatase family A3858_21055 SM00953 A3858_21055 A3858_21065 SM00028 Tetratricopeptide repeats A3858_21070 SM00831 Cation transporter/ATPase, N-terminus A3858_21095 SM00530 Helix-turn-helix XRE-family like proteins A3858_21195 SM00911 HWE histidine kinase A3858_21200 SM01248 A3858_21200 A3858_21205 SM00382 ATPases associated with a variety of cellular activities A3858_21270 SM00342 helix_turn_helix, arabinose operon control protein A3858_21285 SM00382 ATPases associated with a variety of cellular activities A3858_21290 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_21290 SM00895 A3858_21290 A3858_21295 SM01130 A3858_21295 A3858_21310 SM00822 A3858_21310 A3858_21320 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain A3858_21370 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_21375 SM00267 diguanylate cyclase A3858_21400 SM00470 ParB-like nuclease domain A3858_21425 SM00710 Parallel beta-helix repeats A3858_21440 SM01133 A3858_21440 A3858_21445 SM01329 A3858_21445 A3858_21455 SM00829 Enoylreductase A3858_21460 SM00382 ATPases associated with a variety of cellular activities A3858_21480 SM00420 helix_turn_helix, Deoxyribose operon repressor A3858_21480 SM01134 A3858_21480 A3858_21495 SM00354 helix_turn _helix lactose operon repressor A3858_21535 SM00382 ATPases associated with a variety of cellular activities A3858_21540 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_21540 SM00866 A3858_21540 A3858_21545 SM00870 A3858_21545 A3858_21550 SM00382 ATPases associated with a variety of cellular activities A3858_21555 SM00062 Bacterial periplasmic substrate-binding proteins A3858_21585 SM00903 Flavin reductase like domain A3858_21590 SM00822 A3858_21590 A3858_21605 SM00822 A3858_21605 A3858_21620 SM00382 ATPases associated with a variety of cellular activities A3858_21625 SM00382 ATPases associated with a variety of cellular activities A3858_21655 SM00345 helix_turn_helix gluconate operon transcriptional repressor A3858_21655 SM00895 A3858_21655 A3858_21665 SM00344 helix_turn_helix ASNC type A3858_21730 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain