locus-tag class description E3384_00005 PF00308 Bacterial dnaA protein E3384_00005 PF08299 Bacterial dnaA protein helix-turn-helix E3384_00005 PF11638 DnaA N-terminal domain E3384_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain E3384_00010 PF02767 DNA polymerase III beta subunit, central domain E3384_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain E3384_00015 PF02463 RecF/RecN/SMC N terminal domain E3384_00020 PF18053 DNA gyrase B subunit insert domain E3384_00020 PF00204 DNA gyrase B E3384_00020 PF01751 Toprim domain E3384_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_00020 PF00986 DNA gyrase B subunit, carboxyl terminus E3384_00025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_00025 PF03466 LysR substrate binding domain E3384_00030 PF13378 Enolase C-terminal domain-like E3384_00030 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain E3384_00035 PF07690 Major Facilitator Superfamily E3384_00045 PF07729 FCD domain E3384_00045 PF00392 Bacterial regulatory proteins, gntR family E3384_00050 PF05035 2-keto-3-deoxy-galactonokinase E3384_00055 PF01081 KDPG and KHG aldolase E3384_00060 PF13378 Enolase C-terminal domain-like E3384_00060 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain E3384_00065 PF07690 Major Facilitator Superfamily E3384_00070 PF01627 Hpt domain E3384_00070 PF00512 His Kinase A (phospho-acceptor) domain E3384_00070 PF00072 Response regulator receiver domain E3384_00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_00070 PF00672 HAMP domain E3384_00075 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family E3384_00080 PF00072 Response regulator receiver domain E3384_00080 PF00486 Transcriptional regulatory protein, C terminal E3384_00085 PF03264 NapC/NirT cytochrome c family, N-terminal region E3384_00090 PF00384 Molybdopterin oxidoreductase E3384_00090 PF18364 Molybdopterin oxidoreductase N-terminal domain E3384_00090 PF01568 Molydopterin dinucleotide binding domain E3384_00095 PF02613 Nitrate reductase delta subunit E3384_00100 PF14376 Haem-binding domain E3384_00100 PF00034 Cytochrome c E3384_00100 PF03150 Di-haem cytochrome c peroxidase E3384_00105 PF00005 ABC transporter E3384_00110 PF03379 CcmB protein E3384_00115 PF01578 Cytochrome C assembly protein E3384_00120 PF04995 Heme exporter protein D (CcmD) E3384_00125 PF03100 CcmE E3384_00130 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal E3384_00130 PF01578 Cytochrome C assembly protein E3384_00135 PF08534 Redoxin E3384_00140 PF03918 Cytochrome C biogenesis protein E3384_00145 PF07676 WD40-like Beta Propeller Repeat E3384_00145 PF12566 Protein of unknown function (DUF3748) E3384_00150 PF07119 Protein of unknown function (DUF1375) E3384_00155 PF00011 Hsp20/alpha crystallin family E3384_00160 PF00011 Hsp20/alpha crystallin family E3384_00165 PF06826 Predicted Permease Membrane Region E3384_00165 PF02080 TrkA-C domain E3384_00175 PF02656 Domain of unknown function (DUF202) E3384_00180 PF02656 Domain of unknown function (DUF202) E3384_00190 PF00291 Pyridoxal-phosphate dependent enzyme E3384_00195 PF02447 GntP family permease E3384_00200 PF03466 LysR substrate binding domain E3384_00200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_00210 PF07690 Major Facilitator Superfamily E3384_00220 PF13939 Toxin TisB, type I toxin-antitoxin system E3384_00230 PF08049 IlvB leader peptide E3384_00235 PF00205 Thiamine pyrophosphate enzyme, central domain E3384_00235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3384_00235 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3384_00240 PF01842 ACT domain E3384_00245 PF08220 DeoR-like helix-turn-helix domain E3384_00245 PF00455 DeoR C terminal sensor domain E3384_00250 PF00294 pfkB family carbohydrate kinase E3384_00255 PF07690 Major Facilitator Superfamily E3384_00265 PF00072 Response regulator receiver domain E3384_00265 PF00196 Bacterial regulatory proteins, luxR family E3384_00270 PF07730 Histidine kinase E3384_00270 PF05231 MASE1 E3384_00270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_00275 PF07690 Major Facilitator Superfamily E3384_00280 PF07690 Major Facilitator Superfamily E3384_00285 PF06711 Protein of unknown function (DUF1198) E3384_00295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3384_00295 PF08279 HTH domain E3384_00295 PF05043 Mga helix-turn-helix domain E3384_00295 PF00874 PRD domain E3384_00300 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3384_00305 PF03611 PTS system sugar-specific permease component E3384_00315 PF01116 Fructose-bisphosphate aldolase class-II E3384_00335 PF07690 Major Facilitator Superfamily E3384_00340 PF00232 Glycosyl hydrolase family 1 E3384_00350 PF00874 PRD domain E3384_00350 PF00158 Sigma-54 interaction domain E3384_00360 PF03610 PTS system fructose IIA component E3384_00360 PF03830 PTS system sorbose subfamily IIB component E3384_00365 PF03609 PTS system sorbose-specific iic component E3384_00370 PF03613 PTS system mannose/fructose/sorbose family IID component E3384_00375 PF03841 L-seryl-tRNA selenium transferase E3384_00380 PF07071 KDGP aldolase E3384_00385 PF04754 Putative transposase, YhgA-like E3384_00390 PF00892 EamA-like transporter family E3384_00395 PF02308 MgtC family E3384_00400 PF00690 Cation transporter/ATPase, N-terminus E3384_00400 PF00689 Cation transporting ATPase, C-terminus E3384_00415 PF00857 Isochorismatase family E3384_00425 PF00486 Transcriptional regulatory protein, C terminal E3384_00435 PF03797 Autotransporter beta-domain E3384_00440 PF00196 Bacterial regulatory proteins, luxR family E3384_00465 PF01055 Glycosyl hydrolases family 31 E3384_00465 PF13802 Galactose mutarotase-like E3384_00470 PF05170 AsmA family E3384_00475 PF00860 Permease family E3384_00480 PF03616 Sodium/glutamate symporter E3384_00485 PF00271 Helicase conserved C-terminal domain E3384_00485 PF00270 DEAD/DEAH box helicase E3384_00485 PF17191 RecG wedge domain E3384_00490 PF12105 SpoU, rRNA methylase, C-terminal E3384_00490 PF00588 SpoU rRNA Methylase family E3384_00495 PF02824 TGS domain E3384_00495 PF04607 Region found in RelA / SpoT proteins E3384_00495 PF13291 ACT domain E3384_00500 PF01192 RNA polymerase Rpb6 E3384_00505 PF00625 Guanylate kinase E3384_00510 PF01653 NAD-dependent DNA ligase adenylation domain E3384_00510 PF03120 NAD-dependent DNA ligase OB-fold domain E3384_00515 PF03458 UPF0126 domain E3384_00525 PF03466 LysR substrate binding domain E3384_00525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_00530 PF08340 Domain of unknown function (DUF1732) E3384_00530 PF03755 YicC-like family, N-terminal region E3384_00535 PF03725 3' exoribonuclease family, domain 2 E3384_00535 PF01138 3' exoribonuclease family, domain 1 E3384_00540 PF00156 Phosphoribosyl transferase domain E3384_00545 PF00440 Bacterial regulatory proteins, tetR family E3384_00550 PF00692 dUTPase E3384_00555 PF04127 DNA / pantothenate metabolism flavoprotein E3384_00555 PF02441 Flavoprotein E3384_00560 PF04002 RadC-like JAB domain E3384_00565 PF00830 Ribosomal L28 family E3384_00570 PF00471 Ribosomal protein L33 E3384_00575 PF06827 Zinc finger found in FPG and IleRS E3384_00575 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain E3384_00575 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain E3384_00580 PF01467 Cytidylyltransferase-like E3384_00585 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) E3384_00590 PF01075 Glycosyltransferase family 9 (heptosyltransferase) E3384_00595 PF13439 Glycosyltransferase Family 4 E3384_00595 PF00534 Glycosyl transferases group 1 E3384_00615 PF13439 Glycosyltransferase Family 4 E3384_00615 PF00534 Glycosyl transferases group 1 E3384_00620 PF08437 Glycosyl transferase family 8 C-terminal E3384_00620 PF01501 Glycosyl transferase family 8 E3384_00625 PF08437 Glycosyl transferase family 8 C-terminal E3384_00625 PF01501 Glycosyl transferase family 8 E3384_00630 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) E3384_00640 PF00534 Glycosyl transferases group 1 E3384_00645 PF04932 O-Antigen ligase E3384_00650 PF01075 Glycosyltransferase family 9 (heptosyltransferase) E3384_00655 PF01075 Glycosyltransferase family 9 (heptosyltransferase) E3384_00660 PF01370 NAD dependent epimerase/dehydratase family E3384_00665 PF00155 Aminotransferase class I and II E3384_00670 PF08240 Alcohol dehydrogenase GroES-like domain E3384_00670 PF00107 Zinc-binding dehydrogenase E3384_00680 PF00535 Glycosyl transferase family 2 E3384_00685 PF04748 Divergent polysaccharide deacetylase E3384_00690 PF01551 Peptidase family M23 E3384_00695 PF06415 BPG-independent PGAM N-terminus (iPGM_N) E3384_00695 PF01676 Metalloenzyme superfamily E3384_00700 PF00581 Rhodanese-like domain E3384_00705 PF00462 Glutaredoxin E3384_00710 PF02556 Preprotein translocase subunit SecB E3384_00715 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus E3384_00715 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus E3384_00720 PF06426 Serine acetyltransferase, N-terminal E3384_00720 PF00132 Bacterial transferase hexapeptide (six repeats) E3384_00725 PF07690 Major Facilitator Superfamily E3384_00730 PF13378 Enolase C-terminal domain-like E3384_00730 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain E3384_00735 PF00356 Bacterial regulatory proteins, lacI family E3384_00740 PF00588 SpoU rRNA Methylase family E3384_00745 PF01070 FMN-dependent dehydrogenase E3384_00750 PF07729 FCD domain E3384_00750 PF00392 Bacterial regulatory proteins, gntR family E3384_00755 PF02652 L-lactate permease E3384_00760 PF13018 Extended Signal Peptide of Type V secretion system E3384_00760 PF05662 Coiled stalk of trimeric autotransporter adhesin E3384_00760 PF05658 Head domain of trimeric autotransporter adhesin E3384_00760 PF03895 YadA-like membrane anchor domain E3384_00765 PF11622 Protein of unknown function (DUF3251) E3384_00770 PF10928 Protein of unknown function (DUF2810) E3384_00780 PF05068 Mannitol repressor E3384_00785 PF01232 Mannitol dehydrogenase Rossmann domain E3384_00785 PF08125 Mannitol dehydrogenase C-terminal domain E3384_00790 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3384_00790 PF02378 Phosphotransferase system, EIIC E3384_00790 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3384_00800 PF11742 Protein of unknown function (DUF3302) E3384_00805 PF00529 HlyD membrane-fusion protein of T1SS E3384_00805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3384_00810 PF13417 Glutathione S-transferase, N-terminal domain E3384_00810 PF00043 Glutathione S-transferase, C-terminal domain E3384_00815 PF03841 L-seryl-tRNA selenium transferase E3384_00815 PF12390 Selenocysteine synthase N terminal E3384_00820 PF09107 Elongation factor SelB, winged helix E3384_00820 PF00009 Elongation factor Tu GTP binding domain E3384_00820 PF03144 Elongation factor Tu domain 2 E3384_00820 PF09106 Elongation factor SelB, winged helix E3384_00825 PF00480 ROK family E3384_00830 PF00171 Aldehyde dehydrogenase family E3384_00835 PF07944 Beta-L-arabinofuranosidase, GH127 E3384_00845 PF00596 Class II Aldolase and Adducin N-terminal domain E3384_00850 PF01261 Xylose isomerase-like TIM barrel E3384_00855 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family E3384_00860 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E3384_00860 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E3384_00865 PF03480 Bacterial extracellular solute-binding protein, family 7 E3384_00870 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component E3384_00875 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component E3384_00880 PF16154 Domain of unknown function (DUF4862) E3384_00885 PF04074 YhcH/YjgK/YiaL E3384_00890 PF02615 Malate/L-lactate dehydrogenase E3384_00895 PF01614 Bacterial transcriptional regulator E3384_00895 PF09339 IclR helix-turn-helix domain E3384_00900 PF13247 4Fe-4S dicluster domain E3384_00905 PF00155 Aminotransferase class I and II E3384_00910 PF00128 Alpha amylase, catalytic domain E3384_00915 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase E3384_00920 PF12833 Helix-turn-helix domain E3384_00930 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E3384_00930 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E3384_00935 PF05360 yiaA/B two helix domain E3384_00940 PF01757 Acyltransferase family E3384_00950 PF13983 YsaB-like lipoprotein E3384_00955 PF02091 Glycyl-tRNA synthetase alpha subunit E3384_00960 PF02092 Glycyl-tRNA synthetase beta subunit E3384_00960 PF05746 DALR anticodon binding domain E3384_00965 PF13276 HTH-like domain E3384_00965 PF00665 Integrase core domain E3384_00965 PF13333 Integrase core domain E3384_00990 PF00313 'Cold-shock' DNA-binding domain E3384_00995 PF01381 Helix-turn-helix E3384_01000 PF11254 Protein of unknown function (DUF3053) E3384_01005 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3384_01005 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3384_01010 PF00691 OmpA family E3384_01010 PF13488 Glycine zipper E3384_01015 PF01568 Molydopterin dinucleotide binding domain E3384_01015 PF18364 Molybdopterin oxidoreductase N-terminal domain E3384_01015 PF00384 Molybdopterin oxidoreductase E3384_01020 PF00583 Acetyltransferase (GNAT) family E3384_01025 PF03352 Methyladenine glycosylase E3384_01030 PF03797 Autotransporter beta-domain E3384_01035 PF00419 Fimbrial protein E3384_01040 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3384_01040 PF02753 Pili assembly chaperone PapD, C-terminal domain E3384_01045 PF13953 PapC C-terminal domain E3384_01045 PF00577 Outer membrane usher protein E3384_01045 PF13954 PapC N-terminal domain E3384_01050 PF00419 Fimbrial protein E3384_01055 PF00419 Fimbrial protein E3384_01060 PF00884 Sulfatase E3384_01060 PF08019 Phosphoethanolamine transferase EptA/EptB E3384_01075 PF00356 Bacterial regulatory proteins, lacI family E3384_01085 PF00860 Permease family E3384_01090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3384_01095 PF00528 Binding-protein-dependent transport system inner membrane component E3384_01100 PF12911 N-terminal TM domain of oligopeptide transport permease C E3384_01100 PF00528 Binding-protein-dependent transport system inner membrane component E3384_01105 PF00005 ABC transporter E3384_01105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3384_01110 PF00005 ABC transporter E3384_01110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3384_01115 PF03222 Tryptophan/tyrosine permease family E3384_01125 PF13940 Toxin Ldr, type I toxin-antitoxin system E3384_01130 PF11658 Cellulose biosynthesis protein BcsG E3384_01135 PF11120 Cellulose biosynthesis protein BcsF E3384_01140 PF10995 Cellulose biosynthesis GIL E3384_01145 PF10945 Cellulose biosynthesis protein BcsR E3384_01150 PF06564 Cellulose biosynthesis protein BcsQ E3384_01155 PF00535 Glycosyl transferase family 2 E3384_01155 PF07238 PilZ domain E3384_01160 PF03170 Bacterial cellulose synthase subunit E3384_01165 PF01270 Glycosyl hydrolases family 8 E3384_01170 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) E3384_01170 PF13176 Tetratricopeptide repeat E3384_01175 PF17154 Gammaproteobacterial periplasmic sensor domain E3384_01175 PF00563 EAL domain E3384_01175 PF00990 Diguanylate cyclase, GGDEF domain E3384_01175 PF00672 HAMP domain E3384_01180 PF00375 Sodium:dicarboxylate symporter family E3384_01185 PF05193 Peptidase M16 inactive domain E3384_01185 PF00675 Insulinase (Peptidase family M16) E3384_01190 PF00294 pfkB family carbohydrate kinase E3384_01195 PF00563 EAL domain E3384_01200 PF05170 AsmA family E3384_01205 PF00083 Sugar (and other) transporter E3384_01205 PF07690 Major Facilitator Superfamily E3384_01210 PF03631 Virulence factor BrkB E3384_01215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_01215 PF03466 LysR substrate binding domain E3384_01220 PF00196 Bacterial regulatory proteins, luxR family E3384_01235 PF01204 Trehalase E3384_01240 PF07702 UTRA domain E3384_01240 PF00392 Bacterial regulatory proteins, gntR family E3384_01245 PF01380 SIS domain E3384_01250 PF00294 pfkB family carbohydrate kinase E3384_01255 PF03605 Anaerobic c4-dicarboxylate membrane transporter E3384_01260 PF17763 Glutaminase/Asparaginase C-terminal domain E3384_01260 PF00710 Asparaginase, N-terminal E3384_01265 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3384_01265 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3384_01270 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ E3384_01275 PF01569 PAP2 superfamily E3384_01280 PF01432 Peptidase family M3 E3384_01285 PF04445 Putative SAM-dependent methyltransferase E3384_01290 PF00854 POT family E3384_01295 PF00582 Universal stress protein family E3384_01300 PF10625 Universal stress protein B (UspB) E3384_01305 PF01384 Phosphate transporter family E3384_01315 PF13533 Biotin-lipoyl like E3384_01320 PF00005 ABC transporter E3384_01330 PF01402 Ribbon-helix-helix protein, copG family E3384_01330 PF08753 NikR C terminal nickel binding domain E3384_01335 PF01648 4'-phosphopantetheinyl transferase superfamily E3384_01340 PF01594 AI-2E family transporter E3384_01345 PF07690 Major Facilitator Superfamily E3384_01350 PF08786 DcrB E3384_01355 PF02592 Putative vitamin uptake transporter E3384_01360 PF01206 Sulfurtransferase TusA E3384_01365 PF02203 Tar ligand binding domain homologue E3384_01365 PF00672 HAMP domain E3384_01365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3384_01370 PF00403 Heavy-metal-associated domain E3384_01375 PF07947 YhhN family E3384_01380 PF10694 Protein of unknown function (DUF2500) E3384_01385 PF06611 Protein of unknown function (DUF1145) E3384_01395 PF02881 SRP54-type protein, helical bundle domain E3384_01395 PF00448 SRP54-type protein, GTPase domain E3384_01400 PF00005 ABC transporter E3384_01405 PF02687 FtsX-like permease family E3384_01405 PF18075 FtsX extracellular domain E3384_01410 PF04545 Sigma-70, region 4 E3384_01410 PF04542 Sigma-70 region 2 E3384_01415 PF13458 Periplasmic binding protein E3384_01425 PF12568 Acetyltransferase (GNAT) domain, PanZ E3384_01430 PF13458 Periplasmic binding protein E3384_01435 PF02653 Branched-chain amino acid transport system / permease component E3384_01440 PF02653 Branched-chain amino acid transport system / permease component E3384_01440 PF11862 Domain of unknown function (DUF3382) E3384_01445 PF00005 ABC transporter E3384_01445 PF12399 Branched-chain amino acid ATP-binding cassette transporter E3384_01450 PF00005 ABC transporter E3384_01460 PF13416 Bacterial extracellular solute-binding protein E3384_01465 PF00528 Binding-protein-dependent transport system inner membrane component E3384_01470 PF00528 Binding-protein-dependent transport system inner membrane component E3384_01475 PF17912 MalK OB fold domain E3384_01475 PF00005 ABC transporter E3384_01480 PF03009 Glycerophosphoryl diester phosphodiesterase family E3384_01485 PF10956 Protein of unknown function (DUF2756) E3384_01495 PF02126 Phosphotriesterase family E3384_01510 PF00294 pfkB family carbohydrate kinase E3384_01515 PF00583 Acetyltransferase (GNAT) family E3384_01520 PF02894 Oxidoreductase family, C-terminal alpha/beta domain E3384_01520 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E3384_01525 PF17954 Quercetinase C-terminal cupin domain E3384_01525 PF02678 Pirin E3384_01530 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family E3384_01530 PF00356 Bacterial regulatory proteins, lacI family E3384_01535 PF01202 Shikimate kinase E3384_01540 PF02447 GntP family permease E3384_01550 PF02774 Semialdehyde dehydrogenase, dimerisation domain E3384_01550 PF01118 Semialdehyde dehydrogenase, NAD binding domain E3384_01555 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) E3384_01555 PF02806 Alpha amylase, C-terminal all-beta domain E3384_01555 PF00128 Alpha amylase, catalytic domain E3384_01560 PF18390 Glycogen debranching enzyme C-terminal domain E3384_01560 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) E3384_01560 PF00128 Alpha amylase, catalytic domain E3384_01565 PF00483 Nucleotidyl transferase E3384_01570 PF00534 Glycosyl transferases group 1 E3384_01570 PF08323 Starch synthase catalytic domain E3384_01575 PF00343 Carbohydrate phosphorylase E3384_01580 PF01614 Bacterial transcriptional regulator E3384_01580 PF09339 IclR helix-turn-helix domain E3384_01585 PF00701 Dihydrodipicolinate synthetase family E3384_01590 PF00920 Dehydratase family E3384_01595 PF07690 Major Facilitator Superfamily E3384_01600 PF00465 Iron-containing alcohol dehydrogenase E3384_01615 PF16901 C-terminal domain of alpha-glycerophosphate oxidase E3384_01615 PF01266 FAD dependent oxidoreductase E3384_01620 PF00581 Rhodanese-like domain E3384_01625 PF01694 Rhomboid family E3384_01625 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease E3384_01630 PF00455 DeoR C terminal sensor domain E3384_01630 PF08220 DeoR-like helix-turn-helix domain E3384_01635 PF00158 Sigma-54 interaction domain E3384_01635 PF06956 Regulator of RNA terminal phosphate cyclase E3384_01645 PF01139 tRNA-splicing ligase RtcB E3384_01650 PF01137 RNA 3'-terminal phosphate cyclase E3384_01650 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain E3384_01655 PF04221 RelB antitoxin E3384_01660 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ E3384_01665 PF17874 MalT-like TPR region E3384_01665 PF00196 Bacterial regulatory proteins, luxR family E3384_01670 PF00343 Carbohydrate phosphorylase E3384_01675 PF02446 4-alpha-glucanotransferase E3384_01680 PF02447 GntP family permease E3384_01685 PF01521 Iron-sulphur cluster biosynthesis E3384_01685 PF01106 NifU-like domain E3384_01690 PF00156 Phosphoribosyl transferase domain E3384_01695 PF00561 alpha/beta hydrolase fold E3384_01700 PF04754 Putative transposase, YhgA-like E3384_01705 PF09012 FeoC like transcriptional regulator E3384_01710 PF07670 Nucleoside recognition E3384_01710 PF07664 Ferrous iron transport protein B C terminus E3384_01710 PF17910 FeoB cytosolic helical domain E3384_01710 PF02421 Ferrous iron transport protein B E3384_01715 PF04023 FeoA domain E3384_01720 PF16921 Tex protein YqgF-like domain E3384_01720 PF17674 HHH domain E3384_01720 PF00575 S1 RNA binding domain E3384_01720 PF09371 Tex-like protein N-terminal domain E3384_01725 PF03449 Transcription elongation factor, N-terminal E3384_01725 PF01272 Transcription elongation factor, GreA/GreB, C-term E3384_01730 PF00072 Response regulator receiver domain E3384_01730 PF00486 Transcriptional regulatory protein, C terminal E3384_01735 PF00672 HAMP domain E3384_01735 PF00512 His Kinase A (phospho-acceptor) domain E3384_01735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_01740 PF01293 Phosphoenolpyruvate carboxykinase E3384_01745 PF13687 Domain of unknown function (DUF4153) E3384_01750 PF01430 Hsp33 protein E3384_01755 PF01479 S4 domain E3384_01760 PF13419 Haloacid dehalogenase-like hydrolase E3384_01765 PF07095 Intracellular growth attenuator protein IgaA E3384_01770 PF00293 NUDIX domain E3384_01775 PF00905 Penicillin binding protein transpeptidase domain E3384_01775 PF00912 Transglycosylase E3384_01775 PF17092 Penicillin-binding protein OB-like domain E3384_01785 PF05137 Fimbrial assembly protein (PilN) E3384_01795 PF10748 DNA utilization proteins HofP E3384_01800 PF03958 Bacterial type II/III secretion system short domain E3384_01800 PF00263 Bacterial type II and III secretion system protein E3384_01805 PF01202 Shikimate kinase E3384_01810 PF01761 3-dehydroquinate synthase E3384_01815 PF05036 Sporulation related domain E3384_01820 PF02086 D12 class N6 adenine-specific DNA methyltransferase E3384_01825 PF00834 Ribulose-phosphate 3 epimerase family E3384_01830 PF13419 Haloacid dehalogenase-like hydrolase E3384_01835 PF00579 tRNA synthetases class I (W and Y) E3384_01840 PF13978 Protein of unknown function (DUF4223) E3384_01850 PF14824 Sirohaem biosynthesis protein central E3384_01850 PF10414 Sirohaem synthase dimerisation region E3384_01850 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3384_01855 PF01226 Formate/nitrite transporter E3384_01860 PF13806 Rieske-like [2Fe-2S] domain E3384_01865 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E3384_01865 PF04324 BFD-like [2Fe-2S] binding domain E3384_01865 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E3384_01865 PF18267 Rubredoxin NAD+ reductase C-terminal domain E3384_01865 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3384_01870 PF07690 Major Facilitator Superfamily E3384_01875 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD E3384_01880 PF10832 Protein of unknown function (DUF2559) E3384_01885 PF02661 Fic/DOC family E3384_01890 PF00117 Glutamine amidotransferase class-I E3384_01895 PF00202 Aminotransferase class-III E3384_01900 PF12805 FUSC-like inner membrane protein yccS E3384_01905 PF13545 Crp-like helix-turn-helix domain E3384_01905 PF00027 Cyclic nucleotide-binding domain E3384_01910 PF02566 OsmC-like protein E3384_01915 PF00485 Phosphoribulokinase / Uridine kinase family E3384_01920 PF06794 Uncharacterised protein family (UPF0270) E3384_01925 PF00561 alpha/beta hydrolase fold E3384_01930 PF08803 Putative mono-oxygenase ydhR E3384_01935 PF03466 LysR substrate binding domain E3384_01935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_01940 PF00005 ABC transporter E3384_01940 PF12848 ABC transporter E3384_01945 PF02525 Flavodoxin-like fold E3384_01950 PF02254 TrkA-N domain E3384_01950 PF00999 Sodium/hydrogen exchanger family E3384_01955 PF09526 Probable metal-binding protein (DUF2387) E3384_01960 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3384_01965 PF04102 SlyX E3384_01970 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3384_01970 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E3384_01975 PF08348 YheO-like PAS domain E3384_01975 PF13309 HTH domain E3384_01980 PF02635 DsrE/DsrF-like family E3384_01985 PF02635 DsrE/DsrF-like family E3384_01990 PF04077 DsrH like protein E3384_01995 PF00164 Ribosomal protein S12/S23 E3384_02000 PF00177 Ribosomal protein S7p/S5e E3384_02005 PF00679 Elongation factor G C-terminus E3384_02005 PF14492 Elongation Factor G, domain II E3384_02005 PF03144 Elongation factor Tu domain 2 E3384_02005 PF03764 Elongation factor G, domain IV E3384_02005 PF00009 Elongation factor Tu GTP binding domain E3384_02010 PF03143 Elongation factor Tu C-terminal domain E3384_02010 PF03144 Elongation factor Tu domain 2 E3384_02010 PF00009 Elongation factor Tu GTP binding domain E3384_02015 PF04324 BFD-like [2Fe-2S] binding domain E3384_02020 PF00210 Ferritin-like domain E3384_02025 PF01478 Type IV leader peptidase family E3384_02030 PF00338 Ribosomal protein S10p/S20e E3384_02035 PF00297 Ribosomal protein L3 E3384_02040 PF00573 Ribosomal protein L4/L1 family E3384_02045 PF00276 Ribosomal protein L23 E3384_02050 PF03947 Ribosomal Proteins L2, C-terminal domain E3384_02050 PF00181 Ribosomal Proteins L2, RNA binding domain E3384_02055 PF00203 Ribosomal protein S19 E3384_02060 PF00237 Ribosomal protein L22p/L17e E3384_02065 PF07650 KH domain E3384_02065 PF00189 Ribosomal protein S3, C-terminal domain E3384_02070 PF00252 Ribosomal protein L16p/L10e E3384_02075 PF00831 Ribosomal L29 protein E3384_02080 PF00366 Ribosomal protein S17 E3384_02085 PF00238 Ribosomal protein L14p/L23e E3384_02090 PF00467 KOW motif E3384_02090 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 E3384_02095 PF00281 Ribosomal protein L5 E3384_02095 PF00673 ribosomal L5P family C-terminus E3384_02100 PF00253 Ribosomal protein S14p/S29e E3384_02105 PF00410 Ribosomal protein S8 E3384_02110 PF00347 Ribosomal protein L6 E3384_02115 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast E3384_02120 PF03719 Ribosomal protein S5, C-terminal domain E3384_02120 PF00333 Ribosomal protein S5, N-terminal domain E3384_02125 PF00327 Ribosomal protein L30p/L7e E3384_02130 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A E3384_02135 PF00344 SecY translocase E3384_02140 PF00444 Ribosomal protein L36 E3384_02145 PF00416 Ribosomal protein S13/S18 E3384_02150 PF00411 Ribosomal protein S11 E3384_02155 PF00163 Ribosomal protein S4/S9 N-terminal domain E3384_02155 PF01479 S4 domain E3384_02160 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain E3384_02160 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain E3384_02160 PF01000 RNA polymerase Rpb3/RpoA insert domain E3384_02165 PF01196 Ribosomal protein L17 E3384_02170 PF09350 Domain of unknown function (DUF1992) E3384_02175 PF13411 MerR HTH family regulatory protein E3384_02180 PF03889 Alternative ribosome-rescue factor A E3384_02185 PF01741 Large-conductance mechanosensitive channel, MscL E3384_02190 PF02080 TrkA-C domain E3384_02190 PF02254 TrkA-N domain E3384_02195 PF01029 NusB family E3384_02195 PF01189 16S rRNA methyltransferase RsmB/F E3384_02200 PF02911 Formyl transferase, C-terminal domain E3384_02200 PF00551 Formyl transferase E3384_02205 PF01327 Polypeptide deformylase E3384_02210 PF02481 DNA recombination-mediator protein A E3384_02210 PF17782 DprA winged helix domain E3384_02215 PF04361 Protein of unknown function (DUF494) E3384_02220 PF01396 Topoisomerase DNA binding C4 zinc finger E3384_02225 PF01300 Telomere recombination E3384_02230 PF08501 Shikimate dehydrogenase substrate binding domain E3384_02230 PF18317 Shikimate 5'-dehydrogenase C-terminal domain E3384_02230 PF01488 Shikimate / quinate 5-dehydrogenase E3384_02235 PF07369 Protein of unknown function (DUF1488) E3384_02240 PF00132 Bacterial transferase hexapeptide (six repeats) E3384_02280 PF00873 AcrB/AcrD/AcrF family E3384_02285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3384_02285 PF00529 HlyD membrane-fusion protein of T1SS E3384_02290 PF00440 Bacterial regulatory proteins, tetR family E3384_02290 PF08361 MAATS-type transcriptional repressor, C-terminal region E3384_02295 PF03707 Bacterial signalling protein N terminal repeat E3384_02295 PF00990 Diguanylate cyclase, GGDEF domain E3384_02295 PF00563 EAL domain E3384_02300 PF10831 Protein of unknown function (DUF2556) E3384_02305 PF01555 DNA methylase E3384_02310 PF02954 Bacterial regulatory protein, Fis family E3384_02315 PF01207 Dihydrouridine synthase (Dus) E3384_02330 PF00474 Sodium:solute symporter family E3384_02335 PF06196 Protein of unknown function (DUF997) E3384_02340 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E3384_02340 PF00289 Biotin carboxylase, N-terminal domain E3384_02340 PF02785 Biotin carboxylase C-terminal domain E3384_02345 PF00364 Biotin-requiring enzyme E3384_02350 PF01794 Ferric reductase like transmembrane component E3384_02355 PF00174 Oxidoreductase molybdopterin binding domain E3384_02360 PF08240 Alcohol dehydrogenase GroES-like domain E3384_02360 PF00107 Zinc-binding dehydrogenase E3384_02365 PF00563 EAL domain E3384_02365 PF00990 Diguanylate cyclase, GGDEF domain E3384_02365 PF17157 Gammaproteobacterial periplasmic sensor domain E3384_02375 PF04085 rod shape-determining protein MreC E3384_02380 PF04093 rod shape-determining protein MreD E3384_02385 PF02545 Maf-like protein E3384_02390 PF10150 Ribonuclease E/G family E3384_02390 PF00575 S1 RNA binding domain E3384_02395 PF13502 AsmA-like C-terminal region E3384_02395 PF13116 Protein of unknown function E3384_02400 PF01523 Putative modulator of DNA gyrase E3384_02405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_02405 PF03466 LysR substrate binding domain E3384_02410 PF07869 Protein of unknown function (DUF1656) E3384_02415 PF13533 Biotin-lipoyl like E3384_02420 PF04632 Fusaric acid resistance protein family E3384_02425 PF01337 Barstar (barnase inhibitor) E3384_02430 PF07338 Protein of unknown function (DUF1471) E3384_02435 PF07338 Protein of unknown function (DUF1471) E3384_02440 PF02863 Arginine repressor, C-terminal domain E3384_02440 PF01316 Arginine repressor, DNA binding domain E3384_02445 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain E3384_02445 PF00056 lactate/malate dehydrogenase, NAD binding domain E3384_02460 PF00939 Sodium:sulfate symporter transmembrane region E3384_02465 PF05681 Fumarate hydratase (Fumerase) E3384_02470 PF05683 Fumarase C-terminus E3384_02475 PF04277 Oxaloacetate decarboxylase, gamma chain E3384_02480 PF02436 Conserved carboxylase domain E3384_02480 PF00364 Biotin-requiring enzyme E3384_02480 PF00682 HMGL-like E3384_02485 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit E3384_02490 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase E3384_02495 PF13180 PDZ domain E3384_02500 PF00595 PDZ domain E3384_02500 PF13180 PDZ domain E3384_02505 PF06295 Protein of unknown function (DUF1043) E3384_02510 PF03969 AFG1-like ATPase E3384_02515 PF00572 Ribosomal protein L13 E3384_02520 PF00380 Ribosomal protein S9/S16 E3384_02535 PF00043 Glutathione S-transferase, C-terminal domain E3384_02535 PF02798 Glutathione S-transferase, N-terminal domain E3384_02540 PF04386 Stringent starvation protein B E3384_02545 PF00392 Bacterial regulatory proteins, gntR family E3384_02545 PF07729 FCD domain E3384_02550 PF00701 Dihydrodipicolinate synthetase family E3384_02555 PF07690 Major Facilitator Superfamily E3384_02560 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase E3384_02565 PF00480 ROK family E3384_02570 PF04074 YhcH/YjgK/YiaL E3384_02575 PF07969 Amidohydrolase family E3384_02580 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin E3384_02585 PF06250 YhcG PDDEXK nuclease domain E3384_02585 PF17761 DUF1016 N-terminal domain E3384_02590 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3384_02590 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster E3384_02595 PF01493 GXGXG motif E3384_02595 PF01645 Conserved region in glutamate synthase E3384_02595 PF04898 Glutamate synthase central domain E3384_02595 PF00310 Glutamine amidotransferases class-II E3384_02600 PF16199 Radical_SAM C-terminal domain E3384_02600 PF04055 Radical SAM superfamily E3384_02605 PF01627 Hpt domain E3384_02605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_02605 PF00072 Response regulator receiver domain E3384_02605 PF18415 Histidine kinase receptor ArcB trans-membrane domain E3384_02605 PF00512 His Kinase A (phospho-acceptor) domain E3384_02605 PF00989 PAS fold E3384_02615 PF00912 Transglycosylase E3384_02620 PF10707 PhoP regulatory network protein YrbL E3384_02625 PF00381 PTS HPr component phosphorylation site E3384_02630 PF03668 P-loop ATPase protein family E3384_02635 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3384_02640 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein E3384_02645 PF00309 Sigma-54 factor, Activator interacting domain (AID) E3384_02645 PF04963 Sigma-54 factor, core binding domain E3384_02645 PF04552 Sigma-54, DNA binding domain E3384_02650 PF12399 Branched-chain amino acid ATP-binding cassette transporter E3384_02650 PF00005 ABC transporter E3384_02655 PF03968 OstA-like protein E3384_02660 PF06835 Lipopolysaccharide-assembly, LptC-related E3384_02670 PF00571 CBS domain E3384_02670 PF01380 SIS domain E3384_02675 PF01699 Sodium/calcium exchanger protein E3384_02680 PF00005 ABC transporter E3384_02685 PF02405 Permease MlaE E3384_02690 PF02470 MlaD protein E3384_02695 PF05494 MlaC protein E3384_02700 PF13466 STAS domain E3384_02705 PF01722 BolA-like protein E3384_02710 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E3384_02715 PF13693 Winged helix-turn-helix DNA-binding E3384_02720 PF00348 Polyprenyl synthetase E3384_02725 PF00829 Ribosomal prokaryotic L21 protein E3384_02730 PF01016 Ribosomal L27 protein E3384_02735 PF00892 EamA-like transporter family E3384_02740 PF01926 50S ribosome-binding GTPase E3384_02740 PF01018 GTP1/OBG E3384_02745 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family E3384_02750 PF03449 Transcription elongation factor, N-terminal E3384_02750 PF01272 Transcription elongation factor, GreA/GreB, C-term E3384_02755 PF01985 CRS1 / YhbY (CRM) domain E3384_02760 PF01728 FtsJ-like methyltransferase E3384_02765 PF06480 FtsH Extracellular E3384_02765 PF01434 Peptidase family M41 E3384_02765 PF00004 ATPase family associated with various cellular activities (AAA) E3384_02765 PF17862 AAA+ lid domain E3384_02770 PF00809 Pterin binding enzyme E3384_02775 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3384_02775 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3384_02775 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3384_02775 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3384_02780 PF03840 Preprotein translocase SecG subunit E3384_02795 PF00764 Arginosuccinate synthase E3384_02805 PF02576 RimP N-terminal domain E3384_02805 PF17384 RimP C-terminal SH3 domain E3384_02810 PF08529 NusA N-terminal domain E3384_02810 PF13184 NusA-like KH domain E3384_02815 PF00009 Elongation factor Tu GTP binding domain E3384_02815 PF08364 Bacterial translation initiation factor IF-2 associated region E3384_02815 PF04760 Translation initiation factor IF-2, N-terminal region E3384_02815 PF11987 Translation-initiation factor 2 E3384_02820 PF02033 Ribosome-binding factor A E3384_02825 PF16198 tRNA pseudouridylate synthase B C-terminal domain E3384_02825 PF01509 TruB family pseudouridylate synthase (N terminal domain) E3384_02825 PF09157 Pseudouridine synthase II TruB, C-terminal E3384_02830 PF00312 Ribosomal protein S15 E3384_02835 PF00575 S1 RNA binding domain E3384_02835 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain E3384_02835 PF01138 3' exoribonuclease family, domain 1 E3384_02835 PF03725 3' exoribonuclease family, domain 2 E3384_02835 PF00013 KH domain E3384_02840 PF07719 Tetratricopeptide repeat E3384_02840 PF13181 Tetratricopeptide repeat E3384_02850 PF03880 DbpA RNA binding domain E3384_02850 PF00271 Helicase conserved C-terminal domain E3384_02850 PF12343 Cold shock protein DEAD box A E3384_02850 PF00270 DEAD/DEAH box helicase E3384_02855 PF03222 Tryptophan/tyrosine permease family E3384_02865 PF03734 L,D-transpeptidase catalytic domain E3384_02870 PF00296 Luciferase-like monooxygenase E3384_02890 PF13508 Acetyltransferase (GNAT) domain E3384_02895 PF01541 GIY-YIG catalytic domain E3384_02905 PF01965 DJ-1/PfpI family E3384_02910 PF13460 NAD(P)H-binding E3384_02915 PF04972 BON domain E3384_02920 PF13580 SIS domain E3384_02925 PF02021 Uncharacterised protein family UPF0102 E3384_02930 PF04348 LppC putative lipoprotein E3384_02935 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3384_02940 PF08220 DeoR-like helix-turn-helix domain E3384_02945 PF08240 Alcohol dehydrogenase GroES-like domain E3384_02945 PF00107 Zinc-binding dehydrogenase E3384_02950 PF03611 PTS system sugar-specific permease component E3384_02955 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3384_02960 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3384_02965 PF08013 Tagatose 6 phosphate kinase E3384_02970 PF00381 PTS HPr component phosphorylation site E3384_02970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3384_02975 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3384_02975 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3384_02980 PF00294 pfkB family carbohydrate kinase E3384_02985 PF01116 Fructose-bisphosphate aldolase class-II E3384_02990 PF00455 DeoR C terminal sensor domain E3384_02990 PF08220 DeoR-like helix-turn-helix domain E3384_02995 PF00294 pfkB family carbohydrate kinase E3384_03000 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus E3384_03000 PF08666 SAF domain E3384_03005 PF03328 HpcH/HpaI aldolase/citrate lyase family E3384_03010 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E3384_03010 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E3384_03015 PF02595 Glycerate kinase family E3384_03025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_03025 PF03466 LysR substrate binding domain E3384_03030 PF00291 Pyridoxal-phosphate dependent enzyme E3384_03035 PF03222 Tryptophan/tyrosine permease family E3384_03040 PF00871 Acetokinase family E3384_03045 PF01228 Glycine radical E3384_03045 PF02901 Pyruvate formate lyase-like E3384_03050 PF03313 Serine dehydratase alpha chain E3384_03050 PF03315 Serine dehydratase beta chain E3384_03060 PF03313 Serine dehydratase alpha chain E3384_03070 PF02678 Pirin E3384_03070 PF17954 Quercetinase C-terminal cupin domain E3384_03075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_03075 PF03466 LysR substrate binding domain E3384_03080 PF05656 Protein of unknown function (DUF805) E3384_03085 PF13409 Glutathione S-transferase, N-terminal domain E3384_03090 PF07681 DoxX E3384_03095 PF13997 YqjK-like protein E3384_03100 PF07332 Putative Actinobacterial Holin-X, holin superfamily III E3384_03105 PF05957 Bacterial protein of unknown function (DUF883) E3384_03110 PF06476 Protein of unknown function (DUF1090) E3384_03115 PF13721 SecD export protein N-terminal TM region E3384_03120 PF09335 SNARE associated Golgi protein E3384_03125 PF00375 Sodium:dicarboxylate symporter family E3384_03130 PF03741 Integral membrane protein TerC family E3384_03135 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E3384_03140 PF02698 DUF218 domain E3384_03145 PF01863 Protein of unknown function DUF45 E3384_03155 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3384_03155 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E3384_03160 PF00202 Aminotransferase class-III E3384_03165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3384_03165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3384_03165 PF08447 PAS fold E3384_03165 PF08447 PAS fold E3384_03170 PF02203 Tar ligand binding domain homologue E3384_03170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3384_03170 PF00672 HAMP domain E3384_03175 PF03551 Transcriptional regulator PadR-like family E3384_03180 PF08021 Siderophore-interacting FAD-binding domain E3384_03180 PF04954 Siderophore-interacting protein E3384_03190 PF03167 Uracil DNA glycosylase superfamily E3384_03195 PF04539 Sigma-70 region 3 E3384_03195 PF04545 Sigma-70, region 4 E3384_03195 PF04546 Sigma-70, non-essential region E3384_03195 PF04542 Sigma-70 region 2 E3384_03195 PF00140 Sigma-70 factor, region 1.2 E3384_03195 PF03979 Sigma-70 factor, region 1.1 E3384_03200 PF10410 DnaB-helicase binding domain of primase E3384_03200 PF01807 CHC2 zinc finger E3384_03200 PF08275 DNA primase catalytic core, N-terminal domain E3384_03200 PF08278 DNA primase DnaG DnaB-binding E3384_03205 PF01165 Ribosomal protein S21 E3384_03210 PF00814 Glycoprotease family E3384_03225 PF02660 Glycerol-3-phosphate acyltransferase E3384_03230 PF02152 Dihydroneopterin aldolase E3384_03235 PF02673 Bacitracin resistance protein BacA E3384_03240 PF12627 Probable RNA and SrmB- binding site of polymerase A E3384_03240 PF01743 Poly A polymerase head domain E3384_03240 PF01966 HD domain E3384_03245 PF08239 Bacterial SH3 domain E3384_03250 PF01928 CYTH domain E3384_03255 PF03710 Glutamate-ammonia ligase adenylyltransferase E3384_03255 PF08335 GlnD PII-uridylyltransferase E3384_03260 PF00294 pfkB family carbohydrate kinase E3384_03260 PF01467 Cytidylyltransferase-like E3384_03270 PF15975 Flotillin E3384_03270 PF01145 SPFH domain / Band 7 family E3384_03275 PF07290 Protein of unknown function (DUF1449) E3384_03280 PF08971 Glycogen synthesis protein E3384_03285 PF04380 Membrane fusogenic activity E3384_03290 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase E3384_03295 PF02600 Disulfide bond formation protein DsbB E3384_03300 PF01323 DSBA-like thioredoxin domain E3384_03305 PF05935 Arylsulfotransferase (ASST) E3384_03305 PF17425 Arylsulfotransferase Ig-like domain E3384_03310 PF02535 ZIP Zinc transporter E3384_03315 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase E3384_03320 PF03738 Glutathionylspermidine synthase preATP-grasp E3384_03325 PF06693 Protein of unknown function (DUF1190) E3384_03330 PF02321 Outer membrane efflux protein E3384_03335 PF00293 NUDIX domain E3384_03340 PF06853 Protein of unknown function (DUF1249) E3384_03345 PF00149 Calcineurin-like phosphoesterase E3384_03350 PF05728 Uncharacterised protein family (UPF0227) E3384_03355 PF00986 DNA gyrase B subunit, carboxyl terminus E3384_03355 PF01751 Toprim domain E3384_03355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_03355 PF00204 DNA gyrase B E3384_03360 PF03992 Antibiotic biosynthesis monooxygenase E3384_03365 PF02525 Flavodoxin-like fold E3384_03370 PF00512 His Kinase A (phospho-acceptor) domain E3384_03370 PF08521 Two-component sensor kinase N-terminal E3384_03370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_03375 PF00486 Transcriptional regulatory protein, C terminal E3384_03375 PF00072 Response regulator receiver domain E3384_03380 PF04076 Bacterial OB fold (BOF) protein E3384_03385 PF06445 GyrI-like small molecule binding domain E3384_03390 PF03989 DNA gyrase C-terminal domain, beta-propeller E3384_03390 PF00521 DNA gyrase/topoisomerase IV, subunit A E3384_03395 PF01553 Acyltransferase E3384_03400 PF07732 Multicopper oxidase E3384_03400 PF07731 Multicopper oxidase E3384_03400 PF00394 Multicopper oxidase E3384_03405 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component E3384_03415 PF03480 Bacterial extracellular solute-binding protein, family 7 E3384_03420 PF04055 Radical SAM superfamily E3384_03420 PF11842 Domain of unknown function (DUF3362) E3384_03420 PF08497 Radical SAM N-terminal E3384_03435 PF00939 Sodium:sulfate symporter transmembrane region E3384_03440 PF00248 Aldo/keto reductase family E3384_03445 PF00465 Iron-containing alcohol dehydrogenase E3384_03450 PF12833 Helix-turn-helix domain E3384_03450 PF06719 AraC-type transcriptional regulator N-terminus E3384_03455 PF09335 SNARE associated Golgi protein E3384_03460 PF01053 Cys/Met metabolism PLP-dependent enzyme E3384_03465 PF01618 MotA/TolQ/ExbB proton channel family E3384_03470 PF02472 Biopolymer transport protein ExbD/TolR E3384_03495 PF03350 Uncharacterized protein family, UPF0114 E3384_03500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3384_03500 PF02203 Tar ligand binding domain homologue E3384_03500 PF00672 HAMP domain E3384_03505 PF11115 Protein of unknown function (DUF2623) E3384_03510 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E3384_03510 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal E3384_03515 PF13247 4Fe-4S dicluster domain E3384_03520 PF03916 Polysulphide reductase, NrfD E3384_03525 PF00374 Nickel-dependent hydrogenase E3384_03530 PF01750 Hydrogenase maturation protease E3384_03535 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE E3384_03540 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA E3384_03545 PF01455 HupF/HypC family E3384_03560 PF02798 Glutathione S-transferase, N-terminal domain E3384_03565 PF05257 CHAP domain E3384_03565 PF03738 Glutathionylspermidine synthase preATP-grasp E3384_03575 PF02614 Glucuronate isomerase E3384_03580 PF01232 Mannitol dehydrogenase Rossmann domain E3384_03580 PF08125 Mannitol dehydrogenase C-terminal domain E3384_03585 PF03786 D-mannonate dehydratase (UxuA) E3384_03590 PF07690 Major Facilitator Superfamily E3384_03600 PF01522 Polysaccharide deacetylase E3384_03610 PF04965 Gene 25-like lysozyme E3384_03615 PF00171 Aldehyde dehydrogenase family E3384_03620 PF01266 FAD dependent oxidoreductase E3384_03630 PF13520 Amino acid permease E3384_03640 PF00196 Bacterial regulatory proteins, luxR family E3384_03645 PF04055 Radical SAM superfamily E3384_03650 PF00884 Sulfatase E3384_03655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_03655 PF03466 LysR substrate binding domain E3384_03660 PF03328 HpcH/HpaI aldolase/citrate lyase family E3384_03665 PF01575 MaoC like domain E3384_03670 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain E3384_03670 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain E3384_03675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E3384_03685 PF04474 Protein of unknown function (DUF554) E3384_03690 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain E3384_03690 PF01276 Orn/Lys/Arg decarboxylase, major domain E3384_03690 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain E3384_03695 PF03825 Nucleoside H+ symporter E3384_03700 PF01464 Transglycosylase SLT domain E3384_03700 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain E3384_03705 PF04362 Bacterial Fe(2+) trafficking E3384_03710 PF14815 NUDIX domain E3384_03710 PF00730 HhH-GPD superfamily base excision DNA repair protein E3384_03710 PF00633 Helix-hairpin-helix motif E3384_03715 PF02390 Putative methyltransferase E3384_03720 PF04320 Protein with unknown function (DUF469) E3384_03725 PF11101 Protein of unknown function (DUF2884) E3384_03730 PF17763 Glutaminase/Asparaginase C-terminal domain E3384_03730 PF00710 Asparaginase, N-terminal E3384_03735 PF06717 Protein of unknown function (DUF1202) E3384_03740 PF06969 HemN C-terminal domain E3384_03740 PF04055 Radical SAM superfamily E3384_03745 PF01725 Ham1 family E3384_03750 PF02594 Uncharacterised ACR, YggU family COG1872 E3384_03755 PF02325 YGGT family E3384_03760 PF01168 Alanine racemase, N-terminal domain E3384_03765 PF00437 Type II/IV secretion system protein E3384_03775 PF03652 Holliday junction resolvase E3384_03780 PF02622 Uncharacterized ACR, COG1678 E3384_03785 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain E3384_03785 PF02951 Prokaryotic glutathione synthetase, N-terminal domain E3384_03790 PF04452 RNA methyltransferase E3384_03795 PF04231 Endonuclease I E3384_03800 PF17283 SprT-like zinc ribbon domain E3384_03800 PF10263 SprT-like family E3384_03805 PF00083 Sugar (and other) transporter E3384_03810 PF02773 S-adenosylmethionine synthetase, C-terminal domain E3384_03810 PF02772 S-adenosylmethionine synthetase, central domain E3384_03810 PF00438 S-adenosylmethionine synthetase, N-terminal domain E3384_03825 PF17810 Arginine decarboxylase helical bundle domain E3384_03825 PF17944 Arginine decarboxylase C-terminal helical extension E3384_03825 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E3384_03835 PF00392 Bacterial regulatory proteins, gntR family E3384_03835 PF07729 FCD domain E3384_03845 PF01232 Mannitol dehydrogenase Rossmann domain E3384_03845 PF08125 Mannitol dehydrogenase C-terminal domain E3384_03850 PF00107 Zinc-binding dehydrogenase E3384_03850 PF08240 Alcohol dehydrogenase GroES-like domain E3384_03855 PF02615 Malate/L-lactate dehydrogenase E3384_03860 PF04074 YhcH/YjgK/YiaL E3384_03865 PF12697 Alpha/beta hydrolase family E3384_03870 PF00491 Arginase family E3384_03875 PF01435 Peptidase family M48 E3384_03880 PF02779 Transketolase, pyrimidine binding domain E3384_03880 PF02780 Transketolase, C-terminal domain E3384_03880 PF00456 Transketolase, thiamine diphosphate binding domain E3384_03885 PF00005 ABC transporter E3384_03890 PF00005 ABC transporter E3384_03910 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E3384_03910 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E3384_03915 PF00162 Phosphoglycerate kinase E3384_03920 PF01116 Fructose-bisphosphate aldolase class-II E3384_03925 PF00924 Mechanosensitive ion channel E3384_03925 PF05552 Conserved TM helix E3384_03930 PF01810 LysE type translocator E3384_03935 PF04402 Protein of unknown function (DUF541) E3384_03940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_03940 PF03466 LysR substrate binding domain E3384_03945 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) E3384_03950 PF01842 ACT domain E3384_03950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3384_03950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3384_03955 PF01812 5-formyltetrahydrofolate cyclo-ligase family E3384_03965 PF05164 Cell division protein ZapA E3384_03970 PF03695 Uncharacterised protein family (UPF0149) E3384_03975 PF05195 Aminopeptidase P, N-terminal domain E3384_03975 PF00557 Metallopeptidase family M24 E3384_03980 PF01494 FAD binding domain E3384_03985 PF01494 FAD binding domain E3384_03990 PF01571 Aminomethyltransferase folate-binding domain E3384_03990 PF08669 Glycine cleavage T-protein C-terminal barrel domain E3384_03995 PF01597 Glycine cleavage H-protein E3384_04000 PF02347 Glycine cleavage system P-protein E3384_04015 PF00232 Glycosyl hydrolase family 1 E3384_04025 PF03006 Haemolysin-III related E3384_04030 PF01571 Aminomethyltransferase folate-binding domain E3384_04035 PF03937 Flavinator of succinate dehydrogenase E3384_04040 PF07254 Membrane-bound toxin component of toxin-antitoxin system E3384_04045 PF00258 Flavodoxin E3384_04050 PF00589 Phage integrase family E3384_04050 PF02899 Phage integrase, N-terminal SAM-like domain E3384_04055 PF10411 Disulfide bond isomerase protein N-terminus E3384_04055 PF13098 Thioredoxin-like domain E3384_04060 PF01368 DHH family E3384_04060 PF02272 DHHA1 domain E3384_04060 PF17768 RecJ OB domain E3384_04070 PF00152 tRNA synthetases class II (D, K and N) E3384_04070 PF01336 OB-fold nucleic acid binding domain E3384_04075 PF00293 NUDIX domain E3384_04085 PF01476 LysM domain E3384_04085 PF01551 Peptidase family M23 E3384_04095 PF13356 Arm DNA-binding domain E3384_04095 PF00589 Phage integrase family E3384_04095 PF14659 Phage integrase, N-terminal SAM-like domain E3384_04110 PF01022 Bacterial regulatory protein, arsR family E3384_04115 PF06953 Arsenical resistance operon trans-acting repressor ArsD E3384_04120 PF02374 Anion-transporting ATPase E3384_04125 PF02040 Arsenical pump membrane protein E3384_04130 PF03960 ArsC family E3384_04145 PF02374 Anion-transporting ATPase E3384_04150 PF06953 Arsenical resistance operon trans-acting repressor ArsD E3384_04160 PF03358 NADPH-dependent FMN reductase E3384_04195 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3384_04195 PF02753 Pili assembly chaperone PapD, C-terminal domain E3384_04200 PF13954 PapC N-terminal domain E3384_04200 PF00577 Outer membrane usher protein E3384_04200 PF13953 PapC C-terminal domain E3384_04210 PF02308 MgtC family E3384_04255 PF00300 Histidine phosphatase superfamily (branch 1) E3384_04260 PF14863 Alkyl sulfatase dimerisation E3384_04260 PF00753 Metallo-beta-lactamase superfamily E3384_04260 PF14864 Alkyl sulfatase C-terminal E3384_04265 PF00924 Mechanosensitive ion channel E3384_04265 PF12795 Mechanosensitive ion channel porin domain E3384_04265 PF12794 Mechanosensitive ion channel inner membrane domain 1 E3384_04270 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) E3384_04275 PF01926 50S ribosome-binding GTPase E3384_04280 PF08220 DeoR-like helix-turn-helix domain E3384_04280 PF13280 WYL domain E3384_04300 PF06006 Bacterial protein of unknown function (DUF905) E3384_04305 PF06067 Domain of unknown function (DUF932) E3384_04310 PF03230 Antirestriction protein E3384_04315 PF04002 RadC-like JAB domain E3384_04320 PF06174 Protein of unknown function (DUF987) E3384_04325 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A E3384_04330 PF06755 CbtA_toxin of type IV toxin-antitoxin system E3384_04350 PF13505 Outer membrane protein beta-barrel domain E3384_04360 PF00419 Fimbrial protein E3384_04365 PF00577 Outer membrane usher protein E3384_04365 PF13953 PapC C-terminal domain E3384_04365 PF13954 PapC N-terminal domain E3384_04370 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3384_04370 PF02753 Pili assembly chaperone PapD, C-terminal domain E3384_04390 PF03824 High-affinity nickel-transport protein E3384_04395 PF02583 Metal-sensitive transcriptional repressor E3384_04400 PF03222 Tryptophan/tyrosine permease family E3384_04410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_04410 PF03466 LysR substrate binding domain E3384_04415 PF02803 Thiolase, C-terminal domain E3384_04415 PF00108 Thiolase, N-terminal domain E3384_04420 PF04962 KduI/IolB family E3384_04430 PF00083 Sugar (and other) transporter E3384_04435 PF01177 Asp/Glu/Hydantoin racemase E3384_04440 PF03466 LysR substrate binding domain E3384_04440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_04445 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain E3384_04445 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E3384_04450 PF00356 Bacterial regulatory proteins, lacI family E3384_04455 PF00356 Bacterial regulatory proteins, lacI family E3384_04460 PF01553 Acyltransferase E3384_04460 PF00501 AMP-binding enzyme E3384_04465 PF07690 Major Facilitator Superfamily E3384_04470 PF00248 Aldo/keto reductase family E3384_04475 PF06004 Bacterial protein of unknown function (DUF903) E3384_04480 PF03741 Integral membrane protein TerC family E3384_04485 PF02976 DNA mismatch repair enzyme MutH E3384_04490 PF00293 NUDIX domain E3384_04495 PF02896 PEP-utilising enzyme, TIM barrel domain E3384_04495 PF01590 GAF domain E3384_04495 PF00391 PEP-utilising enzyme, mobile domain E3384_04495 PF05524 PEP-utilising enzyme, N-terminal E3384_04505 PF01790 Prolipoprotein diacylglyceryl transferase E3384_04510 PF00303 Thymidylate synthase E3384_04515 PF07963 Prokaryotic N-terminal methylation motif E3384_04520 PF07963 Prokaryotic N-terminal methylation motif E3384_04525 PF10713 Protein of unknown function (DUF2509) E3384_04530 PF12528 Type II secretion prepilin peptidase dependent protein C E3384_04530 PF07963 Prokaryotic N-terminal methylation motif E3384_04535 PF17946 RecC C-terminal domain E3384_04540 PF16187 Middle or third domain of peptidase_M16 E3384_04540 PF05193 Peptidase M16 inactive domain E3384_04540 PF00675 Insulinase (Peptidase family M16) E3384_04545 PF12705 PD-(D/E)XK nuclease superfamily E3384_04545 PF13361 UvrD-like helicase C-terminal domain E3384_04545 PF00580 UvrD/REP helicase N-terminal domain E3384_04550 PF13538 UvrD-like helicase C-terminal domain E3384_04555 PF00583 Acetyltransferase (GNAT) family E3384_04555 PF00696 Amino acid kinase family E3384_04560 PF11741 AMIN domain E3384_04560 PF01520 N-acetylmuramoyl-L-alanine amidase E3384_04575 PF03562 MltA specific insert domain E3384_04575 PF06725 3D domain E3384_04580 PF00899 ThiF family E3384_04585 PF00892 EamA-like transporter family E3384_04590 PF02657 Fe-S metabolism associated domain E3384_04595 PF00266 Aminotransferase class-V E3384_04600 PF06004 Bacterial protein of unknown function (DUF903) E3384_04605 PF03466 LysR substrate binding domain E3384_04605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_04610 PF04241 Protein of unknown function (DUF423) E3384_04615 PF18125 RlmM ferredoxin-like domain E3384_04615 PF01728 FtsJ-like methyltransferase E3384_04620 PF00455 DeoR C terminal sensor domain E3384_04620 PF08220 DeoR-like helix-turn-helix domain E3384_04625 PF05025 RbsD / FucU transport protein family E3384_04630 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E3384_04630 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E3384_04635 PF02952 L-fucose isomerase, C-terminal domain E3384_04635 PF07881 L-fucose isomerase, first N-terminal domain E3384_04635 PF07882 L-fucose isomerase, second N-terminal domain E3384_04640 PF07690 Major Facilitator Superfamily E3384_04645 PF00596 Class II Aldolase and Adducin N-terminal domain E3384_04650 PF00465 Iron-containing alcohol dehydrogenase E3384_04655 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain E3384_04655 PF01367 5'-3' exonuclease, C-terminal SAM fold E3384_04660 PF03315 Serine dehydratase beta chain E3384_04660 PF03313 Serine dehydratase alpha chain E3384_04670 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases E3384_04670 PF03641 Possible lysine decarboxylase E3384_04670 PF11892 Domain of unknown function (DUF3412) E3384_04675 PF14489 QueF-like protein E3384_04675 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term E3384_04680 PF07348 Syd protein (SUKH-2) E3384_04690 PF04287 tRNA pseudouridine synthase C E3384_04695 PF00849 RNA pseudouridylate synthase E3384_04700 PF00258 Flavodoxin E3384_04710 PF07690 Major Facilitator Superfamily E3384_04715 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain E3384_04715 PF13378 Enolase C-terminal domain-like E3384_04720 PF13378 Enolase C-terminal domain-like E3384_04725 PF02595 Glycerate kinase family E3384_04730 PF00512 His Kinase A (phospho-acceptor) domain E3384_04730 PF01627 Hpt domain E3384_04730 PF00672 HAMP domain E3384_04730 PF00072 Response regulator receiver domain E3384_04730 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) E3384_04730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_04735 PF01938 TRAM domain E3384_04735 PF05958 tRNA (Uracil-5-)-methyltransferase E3384_04740 PF02824 TGS domain E3384_04740 PF13291 ACT domain E3384_04740 PF04607 Region found in RelA / SpoT proteins E3384_04745 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH E3384_04765 PF00419 Fimbrial protein E3384_04775 PF00419 Fimbrial protein E3384_04780 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3384_04780 PF02753 Pili assembly chaperone PapD, C-terminal domain E3384_04785 PF13953 PapC C-terminal domain E3384_04785 PF13954 PapC N-terminal domain E3384_04785 PF00577 Outer membrane usher protein E3384_04790 PF00419 Fimbrial protein E3384_04795 PF03819 MazG nucleotide pyrophosphohydrolase domain E3384_04800 PF00117 Glutamine amidotransferase class-I E3384_04800 PF06418 CTP synthase N-terminus E3384_04805 PF03952 Enolase, N-terminal domain E3384_04805 PF00113 Enolase, C-terminal TIM barrel domain E3384_04810 PF04055 Radical SAM superfamily E3384_04815 PF12706 Beta-lactamase superfamily domain E3384_04815 PF03099 Biotin/lipoate A/B protein ligase family E3384_04820 PF01242 6-pyruvoyl tetrahydropterin synthase E3384_04825 PF00175 Oxidoreductase NAD-binding domain E3384_04825 PF00667 FAD binding domain E3384_04825 PF00258 Flavodoxin E3384_04830 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E3384_04830 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E3384_04835 PF01507 Phosphoadenosine phosphosulfate reductase family E3384_04840 PF11047 Salmonella outer protein D E3384_04845 PF00270 DEAD/DEAH box helicase E3384_04845 PF18019 HD domain E3384_04845 PF00271 Helicase conserved C-terminal domain E3384_04850 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) E3384_04860 PF09344 CT1975-like protein E3384_04865 PF09704 CRISPR-associated protein (Cas_Cas5) E3384_04875 PF01867 CRISPR associated protein Cas1 E3384_04880 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) E3384_04885 PF04389 Peptidase family M28 E3384_04890 PF01507 Phosphoadenosine phosphosulfate reductase family E3384_04895 PF00009 Elongation factor Tu GTP binding domain E3384_04905 PF12084 Protein of unknown function (DUF3561) E3384_04910 PF04977 Septum formation initiator E3384_04915 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase E3384_04920 PF02542 YgbB family E3384_04925 PF01142 tRNA pseudouridine synthase D (TruD) E3384_04930 PF01975 Survival protein SurE E3384_04940 PF01551 Peptidase family M23 E3384_04940 PF01476 LysM domain E3384_04945 PF04542 Sigma-70 region 2 E3384_04945 PF04539 Sigma-70 region 3 E3384_04945 PF00140 Sigma-70 factor, region 1.2 E3384_04945 PF04545 Sigma-70, region 4 E3384_04955 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase E3384_04960 PF02441 Flavoprotein E3384_04965 PF01047 MarR family E3384_04970 PF08220 DeoR-like helix-turn-helix domain E3384_04970 PF00455 DeoR C terminal sensor domain E3384_04975 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E3384_04975 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E3384_04980 PF07005 Sugar-binding N-terminal domain E3384_04980 PF17042 Nucleotide-binding C-terminal domain E3384_04985 PF00596 Class II Aldolase and Adducin N-terminal domain E3384_04990 PF01261 Xylose isomerase-like TIM barrel E3384_04995 PF01370 NAD dependent epimerase/dehydratase family E3384_05000 PF02447 GntP family permease E3384_05005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_05005 PF03466 LysR substrate binding domain E3384_05010 PF07690 Major Facilitator Superfamily E3384_05020 PF05192 MutS domain III E3384_05020 PF05190 MutS family domain IV E3384_05020 PF05188 MutS domain II E3384_05020 PF01624 MutS domain I E3384_05020 PF00488 MutS domain V E3384_05045 PF00149 Calcineurin-like phosphoesterase E3384_05085 PF04741 InvH outer membrane lipoprotein E3384_05090 PF12833 Helix-turn-helix domain E3384_05100 PF07201 HrpJ-like domain E3384_05105 PF00771 FHIPEP family E3384_05110 PF03519 Invasion protein B family E3384_05115 PF02874 ATP synthase alpha/beta family, beta-barrel domain E3384_05115 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3384_05115 PF18269 T3SS EscN ATPase C-terminal domain E3384_05120 PF02090 Salmonella surface presentation of antigen gene type M protein E3384_05125 PF02510 Surface presentation of antigens protein E3384_05130 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E3384_05135 PF00813 FliP family E3384_05140 PF01313 Bacterial export proteins, family 3 E3384_05145 PF01311 Bacterial export proteins, family 1 E3384_05150 PF01312 FlhB HrpN YscU SpaS Family E3384_05155 PF07720 Tetratricopeptide repeat E3384_05160 PF04888 Secretion system effector C (SseC) like family E3384_05160 PF16535 Type III cell invasion protein SipB E3384_05165 PF09599 Salmonella-Shigella invasin protein C (IpaC_SipC) E3384_05170 PF06511 Type III secretion systems tip complex components E3384_05175 PF09052 SipA N-terminal domain E3384_05180 PF00550 Phosphopantetheine attachment site E3384_05190 PF05932 Tir chaperone protein (CesT) family E3384_05195 PF03545 Yersinia virulence determinant (YopE) E3384_05195 PF00102 Protein-tyrosine phosphatase E3384_05195 PF09119 SicP binding E3384_05200 PF01464 Transglycosylase SLT domain E3384_05205 PF00486 Transcriptional regulatory protein, C terminal E3384_05210 PF12833 Helix-turn-helix domain E3384_05215 PF09480 Type III secretion system protein PrgH-EprH (PrgH) E3384_05220 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF E3384_05230 PF01514 Secretory protein of YscJ/FliF family E3384_05235 PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) E3384_05250 PF12833 Helix-turn-helix domain E3384_05265 PF00950 ABC 3 transport family E3384_05270 PF00950 ABC 3 transport family E3384_05275 PF00005 ABC transporter E3384_05280 PF01297 Zinc-uptake complex component A periplasmic E3384_05285 PF11756 Nitrous oxide-stimulated promoter E3384_05290 PF00158 Sigma-54 interaction domain E3384_05290 PF01590 GAF domain E3384_05290 PF02954 Bacterial regulatory protein, Fis family E3384_05295 PF00586 AIR synthase related protein, N-terminal domain E3384_05295 PF02769 AIR synthase related protein, C-terminal domain E3384_05300 PF01924 Hydrogenase formation hypA family E3384_05305 PF01455 HupF/HypC family E3384_05310 PF02492 CobW/HypB/UreG, nucleotide-binding domain E3384_05315 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA E3384_05320 PF11046 Transcriptional repressor of hyc and hyp operons E3384_05325 PF13247 4Fe-4S dicluster domain E3384_05330 PF00361 Proton-conducting membrane transporter E3384_05335 PF00146 NADH dehydrogenase E3384_05340 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit E3384_05340 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit E3384_05340 PF00374 Nickel-dependent hydrogenase E3384_05345 PF12838 4Fe-4S dicluster domain E3384_05350 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E3384_05355 PF07450 Formate hydrogenlyase maturation protein HycH E3384_05360 PF01750 Hydrogenase maturation protease E3384_05370 PF12800 4Fe-4S binding domain E3384_05370 PF13247 4Fe-4S dicluster domain E3384_05375 PF01300 Telomere recombination E3384_05375 PF00708 Acylphosphatase E3384_05375 PF17788 HypF Kae1-like domain E3384_05375 PF07503 HypF finger E3384_05380 PF18113 Rubredoxin binding C-terminal domain E3384_05380 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3384_05385 PF00753 Metallo-beta-lactamase superfamily E3384_05385 PF00301 Rubredoxin E3384_05385 PF00258 Flavodoxin E3384_05390 PF01590 GAF domain E3384_05390 PF00158 Sigma-54 interaction domain E3384_05395 PF00571 CBS domain E3384_05395 PF01380 SIS domain E3384_05400 PF08220 DeoR-like helix-turn-helix domain E3384_05400 PF00455 DeoR C terminal sensor domain E3384_05405 PF06923 Glucitol operon activator protein (GutM) E3384_05410 PF00106 short chain dehydrogenase E3384_05415 PF03829 PTS system glucitol/sorbitol-specific IIA component E3384_05420 PF07663 Sorbitol phosphotransferase enzyme II C-terminus E3384_05420 PF03612 Sorbitol phosphotransferase enzyme II N-terminus E3384_05425 PF03608 PTS system enzyme II sorbitol-specific factor E3384_05430 PF13406 Transglycosylase SLT domain E3384_05440 PF02464 Competence-damaged protein E3384_05445 PF00154 recA bacterial DNA recombination protein E3384_05450 PF02631 RecX family E3384_05460 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E3384_05460 PF01411 tRNA synthetases class II (A) E3384_05460 PF02272 DHHA1 domain E3384_05465 PF02599 Global regulator protein family E3384_05495 PF13419 Haloacid dehalogenase-like hydrolase E3384_05500 PF09335 SNARE associated Golgi protein E3384_05505 PF04262 Glutamate-cysteine ligase E3384_05510 PF02664 S-Ribosylhomocysteinase (LuxS) E3384_05520 PF07690 Major Facilitator Superfamily E3384_05525 PF00529 HlyD membrane-fusion protein of T1SS E3384_05525 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3384_05530 PF01047 MarR family E3384_05535 PF07690 Major Facilitator Superfamily E3384_05540 PF04069 Substrate binding domain of ABC-type glycine betaine transport system E3384_05545 PF00528 Binding-protein-dependent transport system inner membrane component E3384_05550 PF00571 CBS domain E3384_05550 PF00005 ABC transporter E3384_05555 PF00268 Ribonucleotide reductase, small chain E3384_05560 PF00317 Ribonucleotide reductase, all-alpha domain E3384_05560 PF02867 Ribonucleotide reductase, barrel domain E3384_05560 PF08343 Ribonucleotide reductase N-terminal E3384_05565 PF07972 NrdI Flavodoxin like E3384_05570 PF00462 Glutaredoxin E3384_05580 PF02627 Carboxymuconolactone decarboxylase family E3384_05585 PF00392 Bacterial regulatory proteins, gntR family E3384_05585 PF00155 Aminotransferase class I and II E3384_05590 PF05957 Bacterial protein of unknown function (DUF883) E3384_05595 PF09400 Protein of unknown function (DUF2002) E3384_05600 PF06610 L-alanine exporter E3384_05610 PF00816 H-NS histone family E3384_05620 PF00581 Rhodanese-like domain E3384_05620 PF11127 Protein of unknown function (DUF2892) E3384_05625 PF01022 Bacterial regulatory protein, arsR family E3384_05630 PF01679 Proteolipid membrane potential modulator E3384_05640 PF01476 LysM domain E3384_05640 PF04972 BON domain E3384_05645 PF07729 FCD domain E3384_05645 PF00392 Bacterial regulatory proteins, gntR family E3384_05650 PF00324 Amino acid permease E3384_05655 PF00202 Aminotransferase class-III E3384_05660 PF00171 Aldehyde dehydrogenase family E3384_05665 PF01266 FAD dependent oxidoreductase E3384_05670 PF08943 CsiD E3384_05675 PF01970 Tripartite tricarboxylate transporter TctA family E3384_05690 PF00072 Response regulator receiver domain E3384_05690 PF00486 Transcriptional regulatory protein, C terminal E3384_05695 PF08521 Two-component sensor kinase N-terminal E3384_05695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_05695 PF00512 His Kinase A (phospho-acceptor) domain E3384_05700 PF03824 High-affinity nickel-transport protein E3384_05715 PF04393 Protein of unknown function (DUF535) E3384_05720 PF00805 Pentapeptide repeats (8 copies) E3384_05730 PF07715 TonB-dependent Receptor Plug Domain E3384_05730 PF00593 TonB dependent receptor E3384_05735 PF00756 Putative esterase E3384_05745 PF00005 ABC transporter E3384_05745 PF00664 ABC transporter transmembrane region E3384_05750 PF06722 Protein of unknown function (DUF1205) E3384_05760 PF00239 Resolvase, N terminal domain E3384_05760 PF02796 Helix-turn-helix domain of resolvase E3384_05765 PF08884 Flagellin D3 domain E3384_05765 PF00700 Bacterial flagellin C-terminal helical region E3384_05765 PF00669 Bacterial flagellin N-terminal helical region E3384_05770 PF03614 Repressor of phase-1 flagellin E3384_05810 PF00589 Phage integrase family E3384_05810 PF13356 Arm DNA-binding domain E3384_05820 PF00529 HlyD membrane-fusion protein of T1SS E3384_05820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3384_05825 PF00664 ABC transporter transmembrane region E3384_05825 PF00005 ABC transporter E3384_05840 PF01668 SmpB protein E3384_05845 PF03364 Polyketide cyclase / dehydrase and lipid transport E3384_05850 PF03658 RnfH family Ubiquitin E3384_05855 PF04355 SmpA / OmlA family E3384_05860 PF02463 RecF/RecN/SMC N terminal domain E3384_05865 PF01513 ATP-NAD kinase E3384_05870 PF01025 GrpE E3384_05880 PF03471 Transporter associated domain E3384_05880 PF00571 CBS domain E3384_05880 PF01595 Cyclin M transmembrane N-terminal domain E3384_05885 PF01578 Cytochrome C assembly protein E3384_05890 PF02978 Signal peptide binding domain E3384_05890 PF00448 SRP54-type protein, GTPase domain E3384_05890 PF02881 SRP54-type protein, helical bundle domain E3384_05895 PF00886 Ribosomal protein S16 E3384_05900 PF01782 RimM N-terminal domain E3384_05900 PF05239 PRC-barrel domain E3384_05905 PF01746 tRNA (Guanine-1)-methyltransferase E3384_05910 PF01245 Ribosomal protein L19 E3384_05915 PF00990 Diguanylate cyclase, GGDEF domain E3384_05915 PF17152 Periplasmic sensor domain E3384_05920 PF13689 YfiR/HmsC-like E3384_05925 PF00793 DAHP synthetase I family E3384_05930 PF01817 Chorismate mutase type II E3384_05930 PF02153 Prephenate dehydrogenase E3384_05935 PF08450 SMP-30/Gluconolactonase/LRE-like region E3384_05940 PF01817 Chorismate mutase type II E3384_05940 PF00800 Prephenate dehydratase E3384_05950 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein E3384_05960 PF13525 Outer membrane lipoprotein E3384_05965 PF00849 RNA pseudouridylate synthase E3384_05965 PF01479 S4 domain E3384_05975 PF02861 Clp amino terminal domain, pathogenicity island component E3384_05975 PF17871 AAA lid domain E3384_05975 PF10431 C-terminal, D2-small domain, of ClpB protein E3384_05975 PF00004 ATPase family associated with various cellular activities (AAA) E3384_05975 PF07724 AAA domain (Cdc48 subfamily) E3384_06005 PF00083 Sugar (and other) transporter E3384_06010 PF10043 Predicted periplasmic lipoprotein (DUF2279) E3384_06015 PF13091 PLD-like domain E3384_06020 PF13607 Succinyl-CoA ligase like flavodoxin domain E3384_06020 PF13380 CoA binding domain E3384_06020 PF00583 Acetyltransferase (GNAT) family E3384_06030 PF00085 Thioredoxin E3384_06035 PF00588 SpoU rRNA Methylase family E3384_06035 PF08032 RNA 2'-O ribose methyltransferase substrate binding E3384_06040 PF03167 Uracil DNA glycosylase superfamily E3384_06045 PF01228 Glycine radical E3384_06050 PF01810 LysE type translocator E3384_06055 PF03466 LysR substrate binding domain E3384_06055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_06060 PF00270 DEAD/DEAH box helicase E3384_06060 PF00271 Helicase conserved C-terminal domain E3384_06065 PF05175 Methyltransferase small domain E3384_06070 PF00890 FAD binding domain E3384_06070 PF02910 Fumarate reductase flavoprotein C-term E3384_06085 PF08281 Sigma-70, region 4 E3384_06085 PF04542 Sigma-70 region 2 E3384_06090 PF03872 Anti sigma-E protein RseA, N-terminal domain E3384_06090 PF03873 Anti sigma-E protein RseA, C-terminal domain E3384_06095 PF17188 MucB/RseB C-terminal domain E3384_06095 PF03888 MucB/RseB N-terminal domain E3384_06105 PF06421 GTP-binding protein LepA C-terminus E3384_06105 PF03144 Elongation factor Tu domain 2 E3384_06105 PF00009 Elongation factor Tu GTP binding domain E3384_06105 PF00679 Elongation factor G C-terminus E3384_06110 PF10502 Signal peptidase, peptidase S26 E3384_06115 PF14622 Ribonuclease-III-like E3384_06115 PF00035 Double-stranded RNA binding motif E3384_06120 PF01926 50S ribosome-binding GTPase E3384_06120 PF07650 KH domain E3384_06125 PF02565 Recombination protein O C terminal E3384_06125 PF11967 Recombination protein O N terminal E3384_06130 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ E3384_06135 PF01648 4'-phosphopantetheinyl transferase superfamily E3384_06140 PF12838 4Fe-4S dicluster domain E3384_06145 PF03466 LysR substrate binding domain E3384_06145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_06150 PF07690 Major Facilitator Superfamily E3384_06155 PF08546 Ketopantoate reductase PanE/ApbA C terminal E3384_06155 PF02558 Ketopantoate reductase PanE/ApbA E3384_06160 PF01418 Helix-turn-helix domain, rpiR family E3384_06160 PF01380 SIS domain E3384_06165 PF01380 SIS domain E3384_06170 PF02378 Phosphotransferase system, EIIC E3384_06170 PF00367 phosphotransferase system, EIIB E3384_06180 PF14437 MafB19-like deaminase E3384_06185 PF01464 Transglycosylase SLT domain E3384_06185 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3384_06195 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain E3384_06195 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal E3384_06195 PF02769 AIR synthase related protein, C-terminal domain E3384_06200 PF00512 His Kinase A (phospho-acceptor) domain E3384_06200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_06205 PF13942 YfhG lipoprotein E3384_06210 PF00158 Sigma-54 interaction domain E3384_06210 PF00072 Response regulator receiver domain E3384_06215 PF00543 Nitrogen regulatory protein P-II E3384_06220 PF00854 POT family E3384_06225 PF01276 Orn/Lys/Arg decarboxylase, major domain E3384_06225 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain E3384_06225 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain E3384_06230 PF13520 Amino acid permease E3384_06235 PF18500 CadC C-terminal domain 1 E3384_06235 PF00486 Transcriptional regulatory protein, C terminal E3384_06240 PF00970 Oxidoreductase FAD-binding domain E3384_06240 PF00042 Globin E3384_06240 PF00175 Oxidoreductase NAD-binding domain E3384_06245 PF00464 Serine hydroxymethyltransferase E3384_06250 PF12832 MFS_1 like family E3384_06255 PF00874 PRD domain E3384_06265 PF03824 High-affinity nickel-transport protein E3384_06270 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E3384_06270 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E3384_06270 PF13187 4Fe-4S dicluster domain E3384_06275 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B E3384_06275 PF00175 Oxidoreductase NAD-binding domain E3384_06280 PF17179 4Fe-4S dicluster domain E3384_06285 PF12146 Serine aminopeptidase, S33 E3384_06290 PF00459 Inositol monophosphatase family E3384_06295 PF00588 SpoU rRNA Methylase family E3384_06300 PF02082 Transcriptional regulator E3384_06305 PF00266 Aminotransferase class-V E3384_06310 PF01592 NifU-like N terminal domain E3384_06315 PF01521 Iron-sulphur cluster biosynthesis E3384_06320 PF07743 HSCB C-terminal oligomerisation domain E3384_06325 PF00012 Hsp70 protein E3384_06330 PF00111 2Fe-2S iron-sulfur cluster binding domain E3384_06335 PF04384 Iron-sulphur cluster assembly E3384_06345 PF12404 Peptidase E3384_06345 PF00883 Cytosol aminopeptidase family, catalytic domain E3384_06350 PF14581 SseB protein C-terminal domain E3384_06350 PF07179 SseB protein N-terminal domain E3384_06360 PF00581 Rhodanese-like domain E3384_06365 PF11974 Bacterial alpha-2-macroglobulin MG3 domain E3384_06365 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain E3384_06365 PF07703 Alpha-2-macroglobulin bait region domain E3384_06365 PF00207 Alpha-2-macroglobulin family E3384_06365 PF01835 MG2 domain E3384_06365 PF17962 Bacterial macroglobulin domain 6 E3384_06365 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain E3384_06365 PF07678 A-macroglobulin TED domain E3384_06365 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain E3384_06370 PF00905 Penicillin binding protein transpeptidase domain E3384_06370 PF06832 Penicillin-Binding Protein C-terminus Family E3384_06370 PF00912 Transglycosylase E3384_06375 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3384_06375 PF01568 Molydopterin dinucleotide binding domain E3384_06375 PF00384 Molybdopterin oxidoreductase E3384_06380 PF12800 4Fe-4S binding domain E3384_06380 PF13247 4Fe-4S dicluster domain E3384_06395 PF00334 Nucleoside diphosphate kinase E3384_06400 PF04055 Radical SAM superfamily E3384_06405 PF13464 Domain of unknown function (DUF4115) E3384_06410 PF04551 GcpE protein E3384_06415 PF03129 Anticodon binding domain E3384_06415 PF13393 Histidyl-tRNA synthetase E3384_06420 PF09976 Tetratricopeptide repeat-like domain E3384_06425 PF13360 PQQ-like domain E3384_06430 PF01926 50S ribosome-binding GTPase E3384_06430 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal E3384_06435 PF07191 zinc-ribbons E3384_06440 PF07979 Intimin C-type lectin domain E3384_06440 PF02369 Bacterial Ig-like domain (group 1) E3384_06440 PF01476 LysM domain E3384_06440 PF02368 Bacterial Ig-like domain (group 2) E3384_06440 PF11924 Inverse autotransporter, beta-domain E3384_06465 PF03797 Autotransporter beta-domain E3384_06470 PF13742 OB-fold nucleic acid binding domain E3384_06470 PF02601 Exonuclease VII, large subunit E3384_06475 PF00478 IMP dehydrogenase / GMP reductase domain E3384_06475 PF00571 CBS domain E3384_06480 PF02540 NAD synthase E3384_06480 PF00958 GMP synthase C terminal domain E3384_06480 PF00117 Glutamine amidotransferase class-I E3384_06500 PF11119 Protein of unknown function (DUF2633) E3384_06510 PF05231 MASE1 E3384_06510 PF00563 EAL domain E3384_06515 PF02541 Ppx/GppA phosphatase family E3384_06520 PF17941 Polyphosphate kinase C-terminal domain 1 E3384_06520 PF02503 Polyphosphate kinase middle domain E3384_06520 PF13090 Polyphosphate kinase C-terminal domain 2 E3384_06520 PF13089 Polyphosphate kinase N-terminal domain E3384_06525 PF00551 Formyl transferase E3384_06530 PF00586 AIR synthase related protein, N-terminal domain E3384_06530 PF02769 AIR synthase related protein, C-terminal domain E3384_06540 PF00860 Permease family E3384_06545 PF00308 Bacterial dnaA protein E3384_06550 PF03960 ArsC family E3384_06555 PF01435 Peptidase family M48 E3384_06560 PF01594 AI-2E family transporter E3384_06565 PF05651 Putative sugar diacid recognition E3384_06565 PF17853 GGDEF-like domain E3384_06565 PF13556 PucR C-terminal helix-turn-helix domain E3384_06570 PF02447 GntP family permease E3384_06575 PF02595 Glycerate kinase family E3384_06580 PF00578 AhpC/TSA family E3384_06585 PF01842 ACT domain E3384_06590 PF00701 Dihydrodipicolinate synthetase family E3384_06595 PF06804 NlpB/DapX lipoprotein E3384_06600 PF01259 SAICAR synthetase E3384_06605 PF04228 Putative neutral zinc metallopeptidase E3384_06610 PF13718 GNAT acetyltransferase 2 E3384_06610 PF17176 tRNA-binding domain E3384_06610 PF05127 Helicase E3384_06610 PF08351 Domain of unknown function (DUF1726) E3384_06615 PF13980 Uncharacterised protein family (UPF0370) E3384_06620 PF07687 Peptidase dimerisation domain E3384_06620 PF01546 Peptidase family M20/M25/M40 E3384_06625 PF03960 ArsC family E3384_06635 PF00873 AcrB/AcrD/AcrF family E3384_06640 PF00672 HAMP domain E3384_06640 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term E3384_06640 PF07730 Histidine kinase E3384_06640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_06645 PF13247 4Fe-4S dicluster domain E3384_06645 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3384_06645 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster E3384_06650 PF00144 Beta-lactamase E3384_06655 PF00293 NUDIX domain E3384_06660 PF06674 Protein of unknown function (DUF1176) E3384_06670 PF02779 Transketolase, pyrimidine binding domain E3384_06670 PF00456 Transketolase, thiamine diphosphate binding domain E3384_06670 PF02780 Transketolase, C-terminal domain E3384_06675 PF00923 Transaldolase/Fructose-6-phosphate aldolase E3384_06680 PF01515 Phosphate acetyl/butaryl transferase E3384_06680 PF03949 Malic enzyme, NAD binding domain E3384_06680 PF00390 Malic enzyme, N-terminal domain E3384_06685 PF00936 BMC domain E3384_06690 PF10662 Ethanolamine utilisation - propanediol utilisation E3384_06695 PF06249 Ethanolamine utilisation protein EutQ E3384_06700 PF01923 Cobalamin adenosyltransferase E3384_06705 PF01515 Phosphate acetyl/butaryl transferase E3384_06710 PF00936 BMC domain E3384_06715 PF03319 Ethanolamine utilisation protein EutN/carboxysome E3384_06720 PF00171 Aldehyde dehydrogenase family E3384_06730 PF00465 Iron-containing alcohol dehydrogenase E3384_06735 PF04346 Ethanolamine utilisation protein, EutH E3384_06740 PF06277 Ethanolamine utilisation protein EutA E3384_06745 PF06751 Ethanolamine ammonia lyase large subunit (EutB) E3384_06750 PF05985 Ethanolamine ammonia-lyase light chain (EutC) E3384_06755 PF00936 BMC domain E3384_06760 PF16365 Ethanolamine utilization protein EutK C-terminus E3384_06760 PF00936 BMC domain E3384_06765 PF12833 Helix-turn-helix domain E3384_06770 PF09234 Domain of unknown function (DUF1963) E3384_06780 PF01218 Coproporphyrinogen III oxidase E3384_06785 PF01520 N-acetylmuramoyl-L-alanine amidase E3384_06790 PF00583 Acetyltransferase (GNAT) family E3384_06795 PF11143 Protein of unknown function (DUF2919) E3384_06800 PF06572 Protein of unknown function (DUF1131) E3384_06805 PF04261 Dyp-type peroxidase family E3384_06820 PF00528 Binding-protein-dependent transport system inner membrane component E3384_06825 PF00528 Binding-protein-dependent transport system inner membrane component E3384_06830 PF00005 ABC transporter E3384_06835 PF00291 Pyridoxal-phosphate dependent enzyme E3384_06840 PF00912 Transglycosylase E3384_06845 PF17263 Family of unknown function (DUF5329) E3384_06850 PF00117 Glutamine amidotransferase class-I E3384_06855 PF00392 Bacterial regulatory proteins, gntR family E3384_06855 PF00155 Aminotransferase class I and II E3384_06860 PF08543 Phosphomethylpyrimidine kinase E3384_06870 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 E3384_06875 PF05524 PEP-utilising enzyme, N-terminal E3384_06875 PF02896 PEP-utilising enzyme, TIM barrel domain E3384_06875 PF00391 PEP-utilising enzyme, mobile domain E3384_06880 PF00381 PTS HPr component phosphorylation site E3384_06885 PF00291 Pyridoxal-phosphate dependent enzyme E3384_06895 PF04354 ZipA, C-terminal FtsZ-binding domain E3384_06900 PF03120 NAD-dependent DNA ligase OB-fold domain E3384_06900 PF12826 Helix-hairpin-helix motif E3384_06900 PF03119 NAD-dependent DNA ligase C4 zinc finger domain E3384_06900 PF00533 BRCA1 C Terminus (BRCT) domain E3384_06900 PF01653 NAD-dependent DNA ligase adenylation domain E3384_06905 PF12843 Putative quorum-sensing-regulated virulence factor E3384_06910 PF13593 SBF-like CPA transporter family (DUF4137) E3384_06915 PF03466 LysR substrate binding domain E3384_06915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_06920 PF03502 Nucleoside-specific channel-forming protein, Tsx E3384_06925 PF01048 Phosphorylase superfamily E3384_06930 PF03825 Nucleoside H+ symporter E3384_06940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_06940 PF03466 LysR substrate binding domain E3384_06960 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3384_06965 PF07037 Putative transcription regulator (DUF1323) E3384_06970 PF07037 Putative transcription regulator (DUF1323) E3384_06985 PF05231 MASE1 E3384_06985 PF00563 EAL domain E3384_06990 PF01773 Na+ dependent nucleoside transporter N-terminus E3384_06990 PF07662 Na+ dependent nucleoside transporter C-terminus E3384_06990 PF07670 Nucleoside recognition E3384_06995 PF01566 Natural resistance-associated macrophage protein E3384_07000 PF10697 Protein of unknown function (DUF2502) E3384_07005 PF00248 Aldo/keto reductase family E3384_07010 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3384_07010 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3384_07010 PF00205 Thiamine pyrophosphate enzyme, central domain E3384_07015 PF00654 Voltage gated chloride channel E3384_07020 PF02685 Glucokinase E3384_07025 PF00155 Aminotransferase class I and II E3384_07035 PF03279 Bacterial lipid A biosynthesis acyltransferase E3384_07040 PF10810 Protein of unknown function (DUF2545) E3384_07045 PF07690 Major Facilitator Superfamily E3384_07055 PF00512 His Kinase A (phospho-acceptor) domain E3384_07055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_07055 PF00672 HAMP domain E3384_07060 PF00072 Response regulator receiver domain E3384_07060 PF14532 Sigma-54 interaction domain E3384_07060 PF02954 Bacterial regulatory protein, Fis family E3384_07065 PF01278 Omptin family E3384_07075 PF01226 Formate/nitrite transporter E3384_07080 PF04333 MlaA lipoprotein E3384_07085 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) E3384_07090 PF04175 Protein of unknown function (DUF406) E3384_07095 PF02803 Thiolase, C-terminal domain E3384_07095 PF00108 Thiolase, N-terminal domain E3384_07100 PF00378 Enoyl-CoA hydratase/isomerase E3384_07100 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E3384_07100 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E3384_07105 PF00300 Histidine phosphatase superfamily (branch 1) E3384_07110 PF01713 Smr domain E3384_07115 PF05175 Methyltransferase small domain E3384_07120 PF01264 Chorismate synthase E3384_07125 PF03411 Penicillin-insensitive murein endopeptidase E3384_07130 PF01925 Sulfite exporter TauE/SafE E3384_07135 PF04315 Elongation factor P hydroxylase E3384_07140 PF08891 YfcL protein E3384_07145 PF01266 FAD dependent oxidoreductase E3384_07145 PF05430 S-adenosyl-L-methionine-dependent methyltransferase E3384_07150 PF00109 Beta-ketoacyl synthase, N-terminal domain E3384_07150 PF02801 Beta-ketoacyl synthase, C-terminal domain E3384_07155 PF02517 CPBP intramembrane metalloprotease E3384_07170 PF13693 Winged helix-turn-helix DNA-binding E3384_07180 PF07690 Major Facilitator Superfamily E3384_07190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3384_07190 PF11890 Domain of unknown function (DUF3410) E3384_07190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3384_07195 PF01118 Semialdehyde dehydrogenase, NAD binding domain E3384_07195 PF02774 Semialdehyde dehydrogenase, dimerisation domain E3384_07200 PF01416 tRNA pseudouridine synthase E3384_07205 PF09335 SNARE associated Golgi protein E3384_07210 PF01039 Carboxyl transferase domain E3384_07210 PF17848 Acetyl-coA carboxylase zinc finger domain E3384_07215 PF08245 Mur ligase middle domain E3384_07215 PF02875 Mur ligase family, glutamate ligase domain E3384_07220 PF05036 Sporulation related domain E3384_07225 PF02674 Colicin V production protein E3384_07230 PF00156 Phosphoribosyl transferase domain E3384_07235 PF02954 Bacterial regulatory protein, Fis family E3384_07235 PF13426 PAS domain E3384_07235 PF00158 Sigma-54 interaction domain E3384_07240 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain E3384_07240 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E3384_07245 PF13520 Amino acid permease E3384_07250 PF01168 Alanine racemase, N-terminal domain E3384_07255 PF00324 Amino acid permease E3384_07260 PF02441 Flavoprotein E3384_07265 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3384_07270 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3384_07275 PF00528 Binding-protein-dependent transport system inner membrane component E3384_07280 PF00528 Binding-protein-dependent transport system inner membrane component E3384_07285 PF00005 ABC transporter E3384_07290 PF01370 NAD dependent epimerase/dehydratase family E3384_07290 PF08338 Domain of unknown function (DUF1731) E3384_07295 PF02798 Glutathione S-transferase, N-terminal domain E3384_07295 PF00043 Glutathione S-transferase, C-terminal domain E3384_07300 PF02798 Glutathione S-transferase, N-terminal domain E3384_07300 PF14834 Glutathione S-transferase, C-terminal domain E3384_07305 PF12850 Calcineurin-like phosphoesterase superfamily domain E3384_07310 PF00293 NUDIX domain E3384_07315 PF00356 Bacterial regulatory proteins, lacI family E3384_07320 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3384_07330 PF03611 PTS system sugar-specific permease component E3384_07335 PF00456 Transketolase, thiamine diphosphate binding domain E3384_07340 PF13292 1-deoxy-D-xylulose-5-phosphate synthase E3384_07340 PF02779 Transketolase, pyrimidine binding domain E3384_07340 PF02780 Transketolase, C-terminal domain E3384_07345 PF03606 C4-dicarboxylate anaerobic carrier E3384_07350 PF01515 Phosphate acetyl/butaryl transferase E3384_07350 PF07085 DRTGG domain E3384_07355 PF00871 Acetokinase family E3384_07360 PF04217 Protein of unknown function, DUF412 E3384_07365 PF03887 YfbU domain E3384_07370 PF13419 Haloacid dehalogenase-like hydrolase E3384_07375 PF03600 Citrate transporter E3384_07375 PF02080 TrkA-C domain E3384_07390 PF00155 Aminotransferase class I and II E3384_07395 PF03466 LysR substrate binding domain E3384_07395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_07405 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 E3384_07410 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E3384_07415 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit E3384_07415 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit E3384_07425 PF10531 SLBB domain E3384_07425 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region E3384_07425 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E3384_07430 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region E3384_07430 PF01568 Molydopterin dinucleotide binding domain E3384_07430 PF00384 Molybdopterin oxidoreductase E3384_07430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3384_07435 PF00146 NADH dehydrogenase E3384_07440 PF12838 4Fe-4S dicluster domain E3384_07445 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 E3384_07450 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L E3384_07455 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus E3384_07455 PF00361 Proton-conducting membrane transporter E3384_07460 PF00361 Proton-conducting membrane transporter E3384_07465 PF00361 Proton-conducting membrane transporter E3384_07470 PF01584 CheW-like domain E3384_07470 PF00072 Response regulator receiver domain E3384_07475 PF12706 Beta-lactamase superfamily domain E3384_07480 PF13673 Acetyltransferase (GNAT) domain E3384_07485 PF05957 Bacterial protein of unknown function (DUF883) E3384_07490 PF00425 chorismate binding enzyme E3384_07495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3384_07495 PF16582 Middle domain of thiamine pyrophosphate E3384_07495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3384_07500 PF12697 Alpha/beta hydrolase family E3384_07505 PF00378 Enoyl-CoA hydratase/isomerase E3384_07510 PF13378 Enolase C-terminal domain-like E3384_07515 PF00501 AMP-binding enzyme E3384_07515 PF13193 AMP-binding enzyme C-terminal domain E3384_07530 PF00892 EamA-like transporter family E3384_07535 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase E3384_07540 PF01522 Polysaccharide deacetylase E3384_07545 PF01370 NAD dependent epimerase/dehydratase family E3384_07545 PF00551 Formyl transferase E3384_07545 PF02911 Formyl transferase, C-terminal domain E3384_07550 PF00535 Glycosyl transferase family 2 E3384_07555 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E3384_07560 PF00300 Histidine phosphatase superfamily (branch 1) E3384_07565 PF00293 NUDIX domain E3384_07570 PF07437 YfaZ precursor E3384_07575 PF00994 Probable molybdopterin binding domain E3384_07580 PF09339 IclR helix-turn-helix domain E3384_07580 PF01614 Bacterial transcriptional regulator E3384_07585 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain E3384_07585 PF13378 Enolase C-terminal domain-like E3384_07590 PF07690 Major Facilitator Superfamily E3384_07595 PF03328 HpcH/HpaI aldolase/citrate lyase family E3384_07600 PF00994 Probable molybdopterin binding domain E3384_07610 PF02754 Cysteine-rich domain E3384_07610 PF13183 4Fe-4S dicluster domain E3384_07615 PF00890 FAD binding domain E3384_07620 PF04324 BFD-like [2Fe-2S] binding domain E3384_07620 PF01266 FAD dependent oxidoreductase E3384_07625 PF07690 Major Facilitator Superfamily E3384_07630 PF03009 Glycerophosphoryl diester phosphodiesterase family E3384_07635 PF03466 LysR substrate binding domain E3384_07635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_07640 PF07690 Major Facilitator Superfamily E3384_07645 PF00111 2Fe-2S iron-sulfur cluster binding domain E3384_07650 PF00268 Ribonucleotide reductase, small chain E3384_07655 PF02867 Ribonucleotide reductase, barrel domain E3384_07655 PF00317 Ribonucleotide reductase, all-alpha domain E3384_07655 PF03477 ATP cone domain E3384_07670 PF07690 Major Facilitator Superfamily E3384_07675 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain E3384_07675 PF13378 Enolase C-terminal domain-like E3384_07680 PF03989 DNA gyrase C-terminal domain, beta-propeller E3384_07680 PF00521 DNA gyrase/topoisomerase IV, subunit A E3384_07685 PF00072 Response regulator receiver domain E3384_07685 PF09456 RcsC Alpha-Beta-Loop (ABL) E3384_07685 PF00512 His Kinase A (phospho-acceptor) domain E3384_07685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_07690 PF00072 Response regulator receiver domain E3384_07690 PF00196 Bacterial regulatory proteins, luxR family E3384_07695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_07695 PF01627 Hpt domain E3384_07695 PF16359 RcsD-ABL domain E3384_07700 PF00267 Gram-negative porin E3384_07705 PF02424 ApbE family E3384_07710 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E3384_07710 PF12833 Helix-turn-helix domain E3384_07710 PF02805 Metal binding domain of Ada E3384_07710 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain E3384_07715 PF13532 2OG-Fe(II) oxygenase superfamily E3384_07720 PF00005 ABC transporter E3384_07725 PF03974 Ecotin E3384_07730 PF00037 4Fe-4S binding domain E3384_07730 PF12800 4Fe-4S binding domain E3384_07730 PF13187 4Fe-4S dicluster domain E3384_07735 PF03927 NapD protein E3384_07740 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3384_07740 PF00384 Molybdopterin oxidoreductase E3384_07740 PF01568 Molydopterin dinucleotide binding domain E3384_07745 PF12800 4Fe-4S binding domain E3384_07745 PF12838 4Fe-4S dicluster domain E3384_07750 PF13237 4Fe-4S dicluster domain E3384_07750 PF12801 4Fe-4S binding domain E3384_07755 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) E3384_07760 PF03264 NapC/NirT cytochrome c family, N-terminal region E3384_07765 PF00005 ABC transporter E3384_07770 PF03379 CcmB protein E3384_07775 PF01578 Cytochrome C assembly protein E3384_07780 PF04995 Heme exporter protein D (CcmD) E3384_07785 PF03100 CcmE E3384_07790 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal E3384_07790 PF01578 Cytochrome C assembly protein E3384_07795 PF08534 Redoxin E3384_07800 PF03918 Cytochrome C biogenesis protein E3384_07805 PF00196 Bacterial regulatory proteins, luxR family E3384_07805 PF00072 Response regulator receiver domain E3384_07820 PF07484 Phage Tail Collar Domain E3384_07820 PF03335 Phage tail fibre repeat E3384_07820 PF08400 Prophage tail fibre N-terminal E3384_07830 PF14496 C-terminal novel E3 ligase, LRR-interacting E3384_07830 PF12468 Type III secretion system leucine rich repeat protein E3384_07845 PF00884 Sulfatase E3384_07845 PF11893 Domain of unknown function (DUF3413) E3384_07850 PF07208 Protein of unknown function (DUF1414) E3384_07855 PF04245 37-kD nucleoid-associated bacterial protein E3384_07865 PF01386 Ribosomal L25p family E3384_07870 PF04851 Type III restriction enzyme, res subunit E3384_07870 PF00271 Helicase conserved C-terminal domain E3384_07875 PF00849 RNA pseudouridylate synthase E3384_07875 PF01479 S4 domain E3384_07880 PF07690 Major Facilitator Superfamily E3384_07885 PF13989 YejG-like protein E3384_07890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3384_07890 PF00005 ABC transporter E3384_07895 PF12911 N-terminal TM domain of oligopeptide transport permease C E3384_07895 PF00528 Binding-protein-dependent transport system inner membrane component E3384_07900 PF00528 Binding-protein-dependent transport system inner membrane component E3384_07905 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3384_07910 PF12792 CSS motif domain associated with EAL E3384_07910 PF00563 EAL domain E3384_07915 PF00877 NlpC/P60 family E3384_07920 PF01569 PAP2 superfamily E3384_07925 PF07683 Cobalamin synthesis protein cobW C-terminal domain E3384_07925 PF02492 CobW/HypB/UreG, nucleotide-binding domain E3384_07930 PF09285 Elongation factor P, C-terminal E3384_07930 PF01132 Elongation factor P (EF-P) OB domain E3384_07930 PF08207 Elongation factor P (EF-P) KOW-like domain E3384_07935 PF03692 Putative zinc- or iron-chelating domain E3384_07950 PF07690 Major Facilitator Superfamily E3384_07955 PF00381 PTS HPr component phosphorylation site E3384_07955 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3384_07960 PF00294 pfkB family carbohydrate kinase E3384_07965 PF02378 Phosphotransferase system, EIIC E3384_07965 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3384_07970 PF01261 Xylose isomerase-like TIM barrel E3384_07975 PF03601 Conserved hypothetical protein 698 E3384_07980 PF03466 LysR substrate binding domain E3384_07980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_07985 PF00324 Amino acid permease E3384_07990 PF07715 TonB-dependent Receptor Plug Domain E3384_07990 PF00593 TonB dependent receptor E3384_07995 PF07690 Major Facilitator Superfamily E3384_08000 PF18429 Domain of unknown function (DUF5609) E3384_08005 PF03315 Serine dehydratase beta chain E3384_08005 PF03313 Serine dehydratase alpha chain E3384_08015 PF00756 Putative esterase E3384_08020 PF01227 GTP cyclohydrolase I E3384_08025 PF04235 Protein of unknown function (DUF418) E3384_08030 PF00356 Bacterial regulatory proteins, lacI family E3384_08035 PF13407 Periplasmic binding protein domain E3384_08040 PF00005 ABC transporter E3384_08045 PF02653 Branched-chain amino acid transport system / permease component E3384_08050 PF01180 Dihydroorotate dehydrogenase E3384_08055 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster E3384_08055 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3384_08060 PF10808 Protein of unknown function (DUF2542) E3384_08065 PF02698 DUF218 domain E3384_08070 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region E3384_08070 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region E3384_08075 PF04172 LrgB-like family E3384_08080 PF03788 LrgA family E3384_08085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_08085 PF03466 LysR substrate binding domain E3384_08090 PF07690 Major Facilitator Superfamily E3384_08095 PF07883 Cupin domain E3384_08100 PF01557 Fumarylacetoacetate (FAA) hydrolase family E3384_08105 PF14497 Glutathione S-transferase, C-terminal domain E3384_08105 PF02798 Glutathione S-transferase, N-terminal domain E3384_08110 PF01494 FAD binding domain E3384_08115 PF01207 Dihydrouridine synthase (Dus) E3384_08125 PF02321 Outer membrane efflux protein E3384_08135 PF09335 SNARE associated Golgi protein E3384_08140 PF04893 Yip1 domain E3384_08145 PF00768 D-alanyl-D-alanine carboxypeptidase E3384_08150 PF01565 FAD binding domain E3384_08150 PF09330 D-lactate dehydrogenase, membrane binding E3384_08155 PF14310 Fibronectin type III-like domain E3384_08155 PF00933 Glycosyl hydrolase family 3 N terminal domain E3384_08155 PF01915 Glycosyl hydrolase family 3 C-terminal domain E3384_08160 PF04069 Substrate binding domain of ABC-type glycine betaine transport system E3384_08165 PF00528 Binding-protein-dependent transport system inner membrane component E3384_08170 PF00005 ABC transporter E3384_08175 PF00528 Binding-protein-dependent transport system inner membrane component E3384_08185 PF13411 MerR HTH family regulatory protein E3384_08190 PF06580 Histidine kinase E3384_08190 PF07694 5TMR of 5TMR-LYT E3384_08195 PF04397 LytTr DNA-binding domain E3384_08195 PF00072 Response regulator receiver domain E3384_08200 PF07308 Protein of unknown function (DUF1456) E3384_08210 PF06998 Protein of unknown function (DUF1307) E3384_08215 PF01588 Putative tRNA binding domain E3384_08215 PF09334 tRNA synthetases class I (M) E3384_08220 PF10609 NUBPL iron-transfer P-loop NTPase E3384_08235 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3384_08235 PF02753 Pili assembly chaperone PapD, C-terminal domain E3384_08240 PF13954 PapC N-terminal domain E3384_08240 PF13953 PapC C-terminal domain E3384_08240 PF00577 Outer membrane usher protein E3384_08245 PF00419 Fimbrial protein E3384_08250 PF11776 Nickel/cobalt transporter regulator E3384_08255 PF02110 Hydroxyethylthiazole kinase family E3384_08260 PF08543 Phosphomethylpyrimidine kinase E3384_08265 PF07702 UTRA domain E3384_08265 PF00392 Bacterial regulatory proteins, gntR family E3384_08270 PF00294 pfkB family carbohydrate kinase E3384_08275 PF03747 ADP-ribosylglycohydrolase E3384_08280 PF03825 Nucleoside H+ symporter E3384_08285 PF01791 DeoC/LacD family aldolase E3384_08290 PF00781 Diacylglycerol kinase catalytic domain E3384_08300 PF05932 Tir chaperone protein (CesT) family E3384_08330 PF00072 Response regulator receiver domain E3384_08330 PF00486 Transcriptional regulatory protein, C terminal E3384_08335 PF00672 HAMP domain E3384_08335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_08335 PF00512 His Kinase A (phospho-acceptor) domain E3384_08340 PF07690 Major Facilitator Superfamily E3384_08345 PF00873 AcrB/AcrD/AcrF family E3384_08350 PF00873 AcrB/AcrD/AcrF family E3384_08355 PF13533 Biotin-lipoyl like E3384_08365 PF00012 Hsp70 protein E3384_08370 PF00730 HhH-GPD superfamily base excision DNA repair protein E3384_08370 PF06029 AlkA N-terminal domain E3384_08375 PF00990 Diguanylate cyclase, GGDEF domain E3384_08375 PF13426 PAS domain E3384_08375 PF08448 PAS fold E3384_08375 PF05231 MASE1 E3384_08375 PF00563 EAL domain E3384_08375 PF08447 PAS fold E3384_08380 PF00485 Phosphoribulokinase / Uridine kinase family E3384_08385 PF00692 dUTPase E3384_08390 PF05170 AsmA family E3384_08395 PF03741 Integral membrane protein TerC family E3384_08395 PF03471 Transporter associated domain E3384_08395 PF00571 CBS domain E3384_08400 PF10531 SLBB domain E3384_08400 PF02563 Polysaccharide biosynthesis/export protein E3384_08400 PF18412 Outer-membrane lipoprotein Wza C-terminal domain E3384_08405 PF01451 Low molecular weight phosphotyrosine protein phosphatase E3384_08410 PF02706 Chain length determinant protein E3384_08410 PF13614 AAA domain E3384_08410 PF13807 G-rich domain on putative tyrosine kinase E3384_08415 PF00535 Glycosyl transferase family 2 E3384_08420 PF00132 Bacterial transferase hexapeptide (six repeats) E3384_08425 PF00534 Glycosyl transferases group 1 E3384_08425 PF13439 Glycosyltransferase Family 4 E3384_08435 PF00535 Glycosyl transferase family 2 E3384_08440 PF00132 Bacterial transferase hexapeptide (six repeats) E3384_08445 PF16363 GDP-mannose 4,6 dehydratase E3384_08450 PF01370 NAD dependent epimerase/dehydratase family E3384_08455 PF00293 NUDIX domain E3384_08460 PF00534 Glycosyl transferases group 1 E3384_08460 PF13579 Glycosyl transferase 4-like domain E3384_08465 PF01050 Mannose-6-phosphate isomerase E3384_08465 PF00483 Nucleotidyl transferase E3384_08470 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3384_08470 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3384_08470 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3384_08470 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3384_08475 PF02397 Bacterial sugar transferase E3384_08485 PF04230 Polysaccharide pyruvyl transferase E3384_08490 PF13439 Glycosyltransferase Family 4 E3384_08490 PF00534 Glycosyl transferases group 1 E3384_08500 PF00483 Nucleotidyl transferase E3384_08515 PF09318 Glycosyl transferase 1 domain A E3384_08515 PF00534 Glycosyl transferases group 1 E3384_08525 PF00483 Nucleotidyl transferase E3384_08525 PF01050 Mannose-6-phosphate isomerase E3384_08530 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3384_08530 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3384_08530 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3384_08530 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3384_08540 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E3384_08540 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain E3384_08545 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain E3384_08545 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain E3384_08550 PF02706 Chain length determinant protein E3384_08555 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase E3384_08555 PF01502 Phosphoribosyl-AMP cyclohydrolase E3384_08560 PF00977 Histidine biosynthesis protein E3384_08565 PF00977 Histidine biosynthesis protein E3384_08570 PF00117 Glutamine amidotransferase class-I E3384_08575 PF00475 Imidazoleglycerol-phosphate dehydratase E3384_08580 PF00155 Aminotransferase class I and II E3384_08585 PF00815 Histidinol dehydrogenase E3384_08590 PF01634 ATP phosphoribosyltransferase E3384_08590 PF08029 HisG, C-terminal domain E3384_08600 PF01370 NAD dependent epimerase/dehydratase family E3384_08605 PF03466 LysR substrate binding domain E3384_08605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_08615 PF13520 Amino acid permease E3384_08620 PF00929 Exonuclease E3384_08620 PF08411 Exonuclease C-terminal E3384_08625 PF13979 SopA-like catalytic domain E3384_08625 PF13981 SopA-like central domain E3384_08635 PF01568 Molydopterin dinucleotide binding domain E3384_08635 PF00384 Molybdopterin oxidoreductase E3384_08635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3384_08640 PF13247 4Fe-4S dicluster domain E3384_08640 PF12800 4Fe-4S binding domain E3384_08645 PF01292 Prokaryotic cytochrome b561 E3384_08650 PF00768 D-alanyl-D-alanine carboxypeptidase E3384_08650 PF07943 Penicillin-binding protein 5, C-terminal domain E3384_08655 PF06445 GyrI-like small molecule binding domain E3384_08660 PF04632 Fusaric acid resistance protein family E3384_08665 PF04363 Protein of unknown function (DUF496) E3384_08670 PF00288 GHMP kinases N terminal domain E3384_08675 PF00871 Acetokinase family E3384_08680 PF10662 Ethanolamine utilisation - propanediol utilisation E3384_08685 PF00936 BMC domain E3384_08695 PF13237 4Fe-4S dicluster domain E3384_08695 PF13375 RnfC Barrel sandwich hybrid domain E3384_08695 PF10531 SLBB domain E3384_08695 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E3384_08700 PF00465 Iron-containing alcohol dehydrogenase E3384_08700 PF00171 Aldehyde dehydrogenase family E3384_08705 PF00171 Aldehyde dehydrogenase family E3384_08710 PF01923 Cobalamin adenosyltransferase E3384_08715 PF03319 Ethanolamine utilisation protein EutN/carboxysome E3384_08725 PF06130 Phosphate propanoyltransferase E3384_08730 PF00936 BMC domain E3384_08735 PF00936 BMC domain E3384_08745 PF08841 Diol dehydratase reactivase ATPase-like domain E3384_08745 PF18427 DD-reactivating factor swiveling domain E3384_08750 PF02287 Dehydratase small subunit E3384_08755 PF02288 Dehydratase medium subunit E3384_08760 PF02286 Dehydratase large subunit E3384_08765 PF00936 BMC domain E3384_08770 PF00936 BMC domain E3384_08775 PF00230 Major intrinsic protein E3384_08780 PF12833 Helix-turn-helix domain E3384_08780 PF10114 Sensory domain found in PocR E3384_08785 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E3384_08785 PF07685 CobB/CobQ-like glutamine amidotransferase domain E3384_08790 PF03186 CobD/Cbib protein E3384_08795 PF02570 Precorrin-8X methylmutase E3384_08800 PF01888 CbiD E3384_08805 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3384_08810 PF05175 Methyltransferase small domain E3384_08815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3384_08820 PF11760 Cobalamin synthesis G N-terminal E3384_08820 PF11761 Cobalamin biosynthesis central region E3384_08820 PF01890 Cobalamin synthesis G C-terminus E3384_08825 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3384_08830 PF02571 Precorrin-6x reductase CbiJ/CobK E3384_08835 PF06180 Cobalt chelatase (CbiK) E3384_08840 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3384_08845 PF01891 Cobalt uptake substrate-specific transmembrane region E3384_08850 PF02553 Cobalt transport protein component CbiN E3384_08855 PF02361 Cobalt transport protein E3384_08860 PF00005 ABC transporter E3384_08865 PF07685 CobB/CobQ-like glutamine amidotransferase domain E3384_08870 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase E3384_08875 PF02654 Cobalamin-5-phosphate synthase E3384_08880 PF02277 Phosphoribosyltransferase E3384_08885 PF17969 L,D-transpeptidase C-terminal domain E3384_08885 PF03734 L,D-transpeptidase catalytic domain E3384_08895 PF01554 MatE E3384_08920 PF13358 DDE superfamily endonuclease E3384_08920 PF13592 Winged helix-turn helix E3384_08945 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus E3384_08945 PF01048 Phosphorylase superfamily E3384_08990 PF00589 Phage integrase family E3384_08990 PF13356 Arm DNA-binding domain E3384_09000 PF06167 Glucose-regulated metallo-peptidase M90 E3384_09020 PF00717 Peptidase S24-like E3384_09025 PF13438 Domain of unknown function (DUF4113) E3384_09025 PF00817 impB/mucB/samB family E3384_09025 PF11799 impB/mucB/samB family C-terminal domain E3384_09030 PF00313 'Cold-shock' DNA-binding domain E3384_09040 PF00267 Gram-negative porin E3384_09050 PF01966 HD domain E3384_09055 PF00145 C-5 cytosine-specific DNA methylase E3384_09055 PF18284 DNA methylase N-terminal domain E3384_09060 PF03852 DNA mismatch endonuclease Vsr E3384_09065 PF00892 EamA-like transporter family E3384_09070 PF05661 Protein of unknown function (DUF808) E3384_09075 PF09926 Uncharacterized small protein (DUF2158) E3384_09080 PF17151 Periplasmic sensor domain E3384_09080 PF00990 Diguanylate cyclase, GGDEF domain E3384_09090 PF10733 Protein of unknown function (DUF2525) E3384_09095 PF10781 Dextransucrase DSRB E3384_09100 PF00196 Bacterial regulatory proteins, luxR family E3384_09105 PF01311 Bacterial export proteins, family 1 E3384_09110 PF01313 Bacterial export proteins, family 3 E3384_09115 PF00813 FliP family E3384_09120 PF04347 Flagellar biosynthesis protein, FliO E3384_09125 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E3384_09125 PF16973 Flagellar motor switch protein FliN N-terminal E3384_09130 PF02154 Flagellar motor switch protein FliM E3384_09130 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E3384_09135 PF03748 Flagellar basal body-associated protein FliL E3384_09140 PF02120 Flagellar hook-length control protein FliK E3384_09145 PF02050 Flagellar FliJ protein E3384_09150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3384_09150 PF18269 T3SS EscN ATPase C-terminal domain E3384_09155 PF02108 Flagellar assembly protein FliH E3384_09160 PF14841 FliG middle domain E3384_09160 PF01706 FliG C-terminal domain E3384_09160 PF14842 FliG N-terminal domain E3384_09165 PF08345 Flagellar M-ring protein C-terminal E3384_09165 PF01514 Secretory protein of YscJ/FliF family E3384_09170 PF02049 Flagellar hook-basal body complex protein FliE E3384_09180 PF01206 Sulfurtransferase TusA E3384_09185 PF04143 Sulphur transport E3384_09190 PF13987 YedD-like protein E3384_09195 PF02806 Alpha amylase, C-terminal all-beta domain E3384_09195 PF00128 Alpha amylase, catalytic domain E3384_09200 PF05400 Flagellar protein FliT E3384_09205 PF02561 Flagellar protein FliS E3384_09210 PF07195 Flagellar hook-associated protein 2 C-terminus E3384_09210 PF07196 Flagellin hook IN motif E3384_09210 PF02465 Flagellar hook-associated protein 2 N-terminus E3384_09215 PF00669 Bacterial flagellin N-terminal helical region E3384_09215 PF08884 Flagellin D3 domain E3384_09215 PF00700 Bacterial flagellin C-terminal helical region E3384_09225 PF04545 Sigma-70, region 4 E3384_09225 PF04539 Sigma-70 region 3 E3384_09225 PF04542 Sigma-70 region 2 E3384_09230 PF02899 Phage integrase, N-terminal SAM-like domain E3384_09240 PF00291 Pyridoxal-phosphate dependent enzyme E3384_09255 PF00196 Bacterial regulatory proteins, luxR family E3384_09255 PF03472 Autoinducer binding domain E3384_09260 PF10769 Protein of unknown function (DUF2594) E3384_09270 PF00072 Response regulator receiver domain E3384_09270 PF00196 Bacterial regulatory proteins, luxR family E3384_09275 PF02151 UvrB/uvrC motif E3384_09275 PF01541 GIY-YIG catalytic domain E3384_09275 PF08459 UvrC Helix-hairpin-helix N-terminal E3384_09280 PF01066 CDP-alcohol phosphatidyltransferase E3384_09315 PF03695 Uncharacterised protein family (UPF0149) E3384_09315 PF02810 SEC-C motif E3384_09320 PF03222 Tryptophan/tyrosine permease family E3384_09325 PF10678 Protein of unknown function (DUF2492) E3384_09330 PF00210 Ferritin-like domain E3384_09335 PF13992 YecR-like lipoprotein E3384_09345 PF00210 Ferritin-like domain E3384_09360 PF02358 Trehalose-phosphatase E3384_09365 PF00982 Glycosyltransferase family 20 E3384_09370 PF00582 Universal stress protein family E3384_09380 PF05247 Flagellar transcriptional activator (FlhD) E3384_09385 PF05280 Flagellar transcriptional activator (FlhC) E3384_09390 PF01618 MotA/TolQ/ExbB proton channel family E3384_09395 PF00691 OmpA family E3384_09395 PF13677 Membrane MotB of proton-channel complex MotA/MotB E3384_09400 PF01627 Hpt domain E3384_09400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_09400 PF02895 Signal transducing histidine kinase, homodimeric domain E3384_09400 PF09078 CheY binding E3384_09400 PF01584 CheW-like domain E3384_09405 PF01584 CheW-like domain E3384_09410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3384_09410 PF00672 HAMP domain E3384_09410 PF02203 Tar ligand binding domain homologue E3384_09415 PF01739 CheR methyltransferase, SAM binding domain E3384_09415 PF03705 CheR methyltransferase, all-alpha domain E3384_09420 PF00072 Response regulator receiver domain E3384_09420 PF01339 CheB methylesterase E3384_09425 PF00072 Response regulator receiver domain E3384_09430 PF04344 Chemotaxis phosphatase, CheZ E3384_09435 PF01312 FlhB HrpN YscU SpaS Family E3384_09440 PF00771 FHIPEP family E3384_09445 PF06366 Flagellar protein FlhE E3384_09450 PF07470 Glycosyl Hydrolase Family 88 E3384_09455 PF00905 Penicillin binding protein transpeptidase domain E3384_09455 PF03717 Penicillin-binding Protein dimerisation domain E3384_09460 PF05746 DALR anticodon binding domain E3384_09460 PF00750 tRNA synthetases class I (R) E3384_09460 PF03485 Arginyl tRNA synthetase N terminal domain E3384_09465 PF06185 YecM protein E3384_09470 PF03932 CutC family E3384_09475 PF08003 Protein of unknown function (DUF1698) E3384_09480 PF13649 Methyltransferase domain E3384_09485 PF01124 MAPEG family E3384_09490 PF01904 Protein of unknown function DUF72 E3384_09495 PF00857 Isochorismatase family E3384_09500 PF02938 GAD domain E3384_09500 PF01336 OB-fold nucleic acid binding domain E3384_09500 PF00152 tRNA synthetases class II (D, K and N) E3384_09505 PF00293 NUDIX domain E3384_09510 PF01709 Transcriptional regulator E3384_09515 PF02075 Crossover junction endodeoxyribonuclease RuvC E3384_09525 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family E3384_09535 PF01330 RuvA N terminal domain E3384_09535 PF07499 RuvA, C-terminal domain E3384_09540 PF17864 RuvB AAA lid domain E3384_09540 PF05491 RuvB C-terminal winged helix domain E3384_09540 PF05496 Holliday junction DNA helicase RuvB P-loop domain E3384_09545 PF00950 ABC 3 transport family E3384_09550 PF00005 ABC transporter E3384_09555 PF01297 Zinc-uptake complex component A periplasmic E3384_09560 PF01476 LysM domain E3384_09560 PF08525 Opacity-associated protein A N-terminal motif E3384_09560 PF01551 Peptidase family M23 E3384_09565 PF03279 Bacterial lipid A biosynthesis acyltransferase E3384_09570 PF02887 Pyruvate kinase, alpha/beta domain E3384_09570 PF00224 Pyruvate kinase, barrel domain E3384_09580 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain E3384_09580 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain E3384_09585 PF00920 Dehydratase family E3384_09590 PF01081 KDPG and KHG aldolase E3384_09595 PF02222 ATP-grasp domain E3384_09600 PF07130 YebG protein E3384_09610 PF04391 Protein of unknown function (DUF533) E3384_09615 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain E3384_09615 PF00326 Prolyl oligopeptidase family E3384_09620 PF00929 Exonuclease E3384_09625 PF00795 Carbon-nitrogen hydrolase E3384_09630 PF06440 DNA polymerase III, theta subunit E3384_09635 PF04234 CopC domain E3384_09640 PF05425 Copper resistance protein D E3384_09645 PF10709 Protein of unknown function (DUF2511) E3384_09660 PF12684 PDDEXK-like domain of unknown function (DUF3799) E3384_09660 PF06630 Enterobacterial exodeoxyribonuclease VIII E3384_09670 PF10721 Protein of unknown function (DUF2514) E3384_09710 PF02040 Arsenical pump membrane protein E3384_09735 PF00892 EamA-like transporter family E3384_09760 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3384_09760 PF02824 TGS domain E3384_09760 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E3384_09760 PF03129 Anticodon binding domain E3384_09770 PF00583 Acetyltransferase (GNAT) family E3384_09780 PF07166 Protein of unknown function (DUF1398) E3384_09785 PF07487 SopE GEF domain E3384_09785 PF05364 Salmonella type III secretion SopE effector N-terminus E3384_09795 PF00149 Calcineurin-like phosphoesterase E3384_09800 PF07358 Protein of unknown function (DUF1482) E3384_09805 PF07351 Protein of unknown function (DUF1480) E3384_09810 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF E3384_09810 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF E3384_09810 PF01189 16S rRNA methyltransferase RsmB/F E3384_09815 PF02470 MlaD protein E3384_09820 PF04403 Paraquat-inducible protein A E3384_09825 PF13185 GAF domain E3384_09830 PF04352 ProQ/FINO family E3384_09830 PF17516 ProQ C-terminal domain E3384_09835 PF17804 Tail specific protease N-terminal domain E3384_09835 PF00595 PDZ domain E3384_09835 PF11818 C-terminal domain of tail specific protease (DUF3340) E3384_09835 PF03572 Peptidase family S41 E3384_09840 PF01435 Peptidase family M48 E3384_09845 PF07690 Major Facilitator Superfamily E3384_09850 PF01614 Bacterial transcriptional regulator E3384_09850 PF09339 IclR helix-turn-helix domain E3384_09855 PF13996 YobH-like protein E3384_09860 PF13998 MgrB protein E3384_09865 PF13974 YebO-like protein E3384_09870 PF10736 Protein of unknown function (DUF2627) E3384_09875 PF00313 'Cold-shock' DNA-binding domain E3384_09880 PF03717 Penicillin-binding Protein dimerisation domain E3384_09880 PF00905 Penicillin binding protein transpeptidase domain E3384_09885 PF13847 Methyltransferase domain E3384_09890 PF02659 Putative manganese efflux pump E3384_09895 PF06173 Protein of unknown function (DUF986) E3384_09900 PF03613 PTS system mannose/fructose/sorbose family IID component E3384_09905 PF03609 PTS system sorbose-specific iic component E3384_09910 PF03830 PTS system sorbose subfamily IIB component E3384_09910 PF03610 PTS system fructose IIA component E3384_09915 PF03741 Integral membrane protein TerC family E3384_09915 PF03471 Transporter associated domain E3384_09920 PF00563 EAL domain E3384_09920 PF12792 CSS motif domain associated with EAL E3384_09925 PF03315 Serine dehydratase beta chain E3384_09925 PF03313 Serine dehydratase alpha chain E3384_09930 PF00293 NUDIX domain E3384_09935 PF00425 chorismate binding enzyme E3384_09935 PF04715 Anthranilate synthase component I, N terminal region E3384_09940 PF03701 Uncharacterised protein family (UPF0181) E3384_09945 PF01042 Endoribonuclease L-PSP E3384_09950 PF04851 Type III restriction enzyme, res subunit E3384_09950 PF13307 Helicase C-terminal domain E3384_09955 PF00814 Glycoprotease family E3384_09960 PF03843 Outer membrane lipoprotein Slp family E3384_09965 PF00501 AMP-binding enzyme E3384_09965 PF13193 AMP-binding enzyme C-terminal domain E3384_09970 PF01612 3'-5' exonuclease E3384_09970 PF00570 HRDC domain E3384_09975 PF03776 Septum formation topological specificity factor MinE E3384_09980 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E3384_09985 PF05209 Septum formation inhibitor MinC, N-terminal domain E3384_09985 PF03775 Septum formation inhibitor MinC, C-terminal domain E3384_09990 PF05166 YcgL domain E3384_09995 PF01557 Fumarylacetoacetate (FAA) hydrolase family E3384_10000 PF03692 Putative zinc- or iron-chelating domain E3384_10010 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system E3384_10020 PF02600 Disulfide bond formation protein DsbB E3384_10025 PF06450 Bacterial Na+/H+ antiporter B (NhaB) E3384_10030 PF00392 Bacterial regulatory proteins, gntR family E3384_10030 PF07840 FadR C-terminal domain E3384_10035 PF04293 SpoVR like protein E3384_10040 PF01266 FAD dependent oxidoreductase E3384_10045 PF00842 Alanine racemase, C-terminal domain E3384_10045 PF01168 Alanine racemase, N-terminal domain E3384_10050 PF02080 TrkA-C domain E3384_10050 PF00999 Sodium/hydrogen exchanger family E3384_10050 PF03471 Transporter associated domain E3384_10055 PF02016 LD-carboxypeptidase N-terminal domain E3384_10055 PF17676 LD-carboxypeptidase C-terminal domain E3384_10060 PF01464 Transglycosylase SLT domain E3384_10065 PF07238 PilZ domain E3384_10065 PF07317 Flagellar regulator YcgR E3384_10070 PF04226 Transglycosylase associated protein E3384_10075 PF01204 Trehalase E3384_10080 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain E3384_10080 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase E3384_10085 PF08173 Membrane bound YbgT-like protein E3384_10090 PF02322 Cytochrome bd terminal oxidase subunit II E3384_10095 PF01654 Cytochrome bd terminal oxidase subunit I E3384_10100 PF04809 HupH hydrogenase expression protein, C-terminal conserved region E3384_10105 PF07449 Hydrogenase-1 expression protein HyaE E3384_10110 PF01750 Hydrogenase maturation protease E3384_10115 PF01292 Prokaryotic cytochrome b561 E3384_10120 PF00374 Nickel-dependent hydrogenase E3384_10125 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal E3384_10125 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E3384_10140 PF06071 Protein of unknown function (DUF933) E3384_10140 PF01926 50S ribosome-binding GTPase E3384_10145 PF01195 Peptidyl-tRNA hydrolase E3384_10150 PF10762 Protein of unknown function (DUF2583) E3384_10155 PF01740 STAS domain E3384_10155 PF00916 Sulfate permease family E3384_10160 PF14572 Phosphoribosyl synthetase-associated domain E3384_10160 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase E3384_10165 PF00288 GHMP kinases N terminal domain E3384_10165 PF08544 GHMP kinases C terminal E3384_10170 PF03550 Outer membrane lipoprotein LolB E3384_10175 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain E3384_10175 PF01488 Shikimate / quinate 5-dehydrogenase E3384_10175 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain E3384_10180 PF03462 PCRF domain E3384_10180 PF00472 RF-1 domain E3384_10185 PF13847 Methyltransferase domain E3384_10185 PF17827 PrmC N-terminal domain E3384_10190 PF04247 Invasion gene expression up-regulator, SirB E3384_10195 PF13369 Transglutaminase-like superfamily E3384_10200 PF00793 DAHP synthetase I family E3384_10205 PF01699 Sodium/calcium exchanger protein E3384_10210 PF06150 ChaB E3384_10215 PF02635 DsrE/DsrF-like family E3384_10220 PF11924 Inverse autotransporter, beta-domain E3384_10225 PF00196 Bacterial regulatory proteins, luxR family E3384_10225 PF00072 Response regulator receiver domain E3384_10230 PF00672 HAMP domain E3384_10230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_10230 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term E3384_10230 PF07730 Histidine kinase E3384_10235 PF07690 Major Facilitator Superfamily E3384_10240 PF00384 Molybdopterin oxidoreductase E3384_10240 PF01568 Molydopterin dinucleotide binding domain E3384_10240 PF14710 Respiratory nitrate reductase alpha N-terminal E3384_10245 PF13247 4Fe-4S dicluster domain E3384_10245 PF14711 Respiratory nitrate reductase beta C-terminal E3384_10250 PF02613 Nitrate reductase delta subunit E3384_10255 PF02665 Nitrate reductase gamma subunit E3384_10300 PF00551 Formyl transferase E3384_10300 PF01842 ACT domain E3384_10305 PF02810 SEC-C motif E3384_10310 PF01734 Patatin-like phospholipase E3384_10315 PF00072 Response regulator receiver domain E3384_10320 PF00483 Nucleotidyl transferase E3384_10325 PF00816 H-NS histone family E3384_10330 PF00265 Thymidine kinase E3384_10335 PF00171 Aldehyde dehydrogenase family E3384_10335 PF00465 Iron-containing alcohol dehydrogenase E3384_10340 PF01914 MarC family integral membrane protein E3384_10350 PF00528 Binding-protein-dependent transport system inner membrane component E3384_10355 PF12911 N-terminal TM domain of oligopeptide transport permease C E3384_10355 PF00528 Binding-protein-dependent transport system inner membrane component E3384_10360 PF00005 ABC transporter E3384_10360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3384_10365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3384_10365 PF00005 ABC transporter E3384_10370 PF00027 Cyclic nucleotide-binding domain E3384_10370 PF00520 Ion transport protein E3384_10375 PF04269 Protein of unknown function, DUF440 E3384_10380 PF13396 Phospholipase_D-nuclease N-terminal E3384_10380 PF13091 PLD-like domain E3384_10390 PF03795 YCII-related domain E3384_10395 PF03544 Gram-negative bacterial TonB protein C-terminal E3384_10405 PF04279 Intracellular septation protein A E3384_10415 PF03692 Putative zinc- or iron-chelating domain E3384_10420 PF03922 OmpW family E3384_10425 PF05067 Manganese containing catalase E3384_10435 PF05974 Domain of unknown function (DUF892) E3384_10440 PF10685 Stress-induced bacterial acidophilic repeat motif E3384_10445 PF00290 Tryptophan synthase alpha chain E3384_10450 PF00291 Pyridoxal-phosphate dependent enzyme E3384_10455 PF00218 Indole-3-glycerol phosphate synthase E3384_10455 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase E3384_10460 PF00117 Glutamine amidotransferase class-I E3384_10460 PF02885 Glycosyl transferase family, helical bundle domain E3384_10460 PF00591 Glycosyl transferase family, a/b domain E3384_10465 PF04715 Anthranilate synthase component I, N terminal region E3384_10465 PF00425 chorismate binding enzyme E3384_10470 PF08255 Trp-operon Leader Peptide E3384_10475 PF02811 PHP domain E3384_10480 PF01300 Telomere recombination E3384_10485 PF01479 S4 domain E3384_10485 PF00849 RNA pseudouridylate synthase E3384_10490 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP E3384_10495 PF00106 short chain dehydrogenase E3384_10500 PF01343 Peptidase family S49 E3384_10500 PF08496 Peptidase family S49 N-terminal E3384_10505 PF10692 Protein of unknown function (DUF2498) E3384_10510 PF01131 DNA topoisomerase E3384_10510 PF01751 Toprim domain E3384_10510 PF08272 Topoisomerase I zinc-ribbon-like E3384_10510 PF01396 Topoisomerase DNA binding C4 zinc finger E3384_10520 PF03466 LysR substrate binding domain E3384_10520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_10535 PF00694 Aconitase C-terminal domain E3384_10535 PF00330 Aconitase family (aconitate hydratase) E3384_10540 PF00925 GTP cyclohydrolase II E3384_10545 PF01569 PAP2 superfamily E3384_10550 PF06305 Lipopolysaccharide assembly protein A domain E3384_10555 PF18073 Rubredoxin metal binding domain E3384_10560 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family E3384_10565 PF01253 Translation initiation factor SUI1 E3384_10570 PF05433 Glycine zipper 2TM domain E3384_10575 PF00455 DeoR C terminal sensor domain E3384_10575 PF08220 DeoR-like helix-turn-helix domain E3384_10585 PF13426 PAS domain E3384_10585 PF00990 Diguanylate cyclase, GGDEF domain E3384_10585 PF00563 EAL domain E3384_10590 PF00575 S1 RNA binding domain E3384_10590 PF17876 Cold shock domain E3384_10590 PF08206 Ribonuclease B OB domain E3384_10590 PF00773 RNB domain E3384_10625 PF00005 ABC transporter E3384_10630 PF00005 ABC transporter E3384_10630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3384_10635 PF12911 N-terminal TM domain of oligopeptide transport permease C E3384_10635 PF00528 Binding-protein-dependent transport system inner membrane component E3384_10640 PF00528 Binding-protein-dependent transport system inner membrane component E3384_10645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3384_10650 PF00158 Sigma-54 interaction domain E3384_10650 PF02954 Bacterial regulatory protein, Fis family E3384_10655 PF04012 PspA/IM30 family E3384_10660 PF06667 Phage shock protein B E3384_10665 PF04024 PspC domain E3384_10670 PF09584 Phage shock protein PspD (Phageshock_PspD) E3384_10675 PF00581 Rhodanese-like domain E3384_10680 PF04317 YcjX-like family, DUF463 E3384_10685 PF05128 Domain of unknown function (DUF697) E3384_10690 PF00158 Sigma-54 interaction domain E3384_10690 PF18024 Helix-turn-helix domain E3384_10695 PF08534 Redoxin E3384_10700 PF13378 Enolase C-terminal domain-like E3384_10700 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain E3384_10705 PF00246 Zinc carboxypeptidase E3384_10710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3384_10720 PF03466 LysR substrate binding domain E3384_10720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_10725 PF00248 Aldo/keto reductase family E3384_10735 PF00440 Bacterial regulatory proteins, tetR family E3384_10750 PF06445 GyrI-like small molecule binding domain E3384_10750 PF12833 Helix-turn-helix domain E3384_10770 PF08534 Redoxin E3384_10790 PF00924 Mechanosensitive ion channel E3384_10795 PF10749 Protein of unknown function (DUF2534) E3384_10800 PF00582 Universal stress protein family E3384_10805 PF00027 Cyclic nucleotide-binding domain E3384_10805 PF13545 Crp-like helix-turn-helix domain E3384_10810 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E3384_10810 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain E3384_10815 PF01713 Smr domain E3384_10820 PF00672 HAMP domain E3384_10820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3384_10820 PF02203 Tar ligand binding domain homologue E3384_10825 PF01544 CorA-like Mg2+ transporter protein E3384_10835 PF00270 DEAD/DEAH box helicase E3384_10835 PF03880 DbpA RNA binding domain E3384_10835 PF00271 Helicase conserved C-terminal domain E3384_10840 PF01171 PP-loop family E3384_10850 PF00893 Small Multidrug Resistance protein E3384_10855 PF00582 Universal stress protein family E3384_10860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3384_10860 PF10371 Domain of unknown function E3384_10860 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase E3384_10860 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg E3384_10860 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II E3384_10870 PF03891 Domain of unknown function (DUF333) E3384_10875 PF03724 META domain E3384_10880 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3384_10880 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3384_10885 PF11739 Dicarboxylate transport E3384_10890 PF13617 YnbE-like lipoprotein E3384_10895 PF07027 Protein of unknown function (DUF1318) E3384_10905 PF02525 Flavodoxin-like fold E3384_10910 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold E3384_10910 PF00271 Helicase conserved C-terminal domain E3384_10910 PF00270 DEAD/DEAH box helicase E3384_10910 PF11898 Domain of unknown function (DUF3418) E3384_10910 PF04408 Helicase associated domain (HA2) E3384_10915 PF02698 DUF218 domain E3384_10920 PF01292 Prokaryotic cytochrome b561 E3384_10925 PF08242 Methyltransferase domain E3384_10935 PF00528 Binding-protein-dependent transport system inner membrane component E3384_10940 PF00005 ABC transporter E3384_10945 PF00528 Binding-protein-dependent transport system inner membrane component E3384_10950 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3384_10960 PF00657 GDSL-like Lipase/Acylhydrolase E3384_10960 PF06767 Sif protein E3384_10975 PF02583 Metal-sensitive transcriptional repressor E3384_10980 PF00107 Zinc-binding dehydrogenase E3384_10980 PF08240 Alcohol dehydrogenase GroES-like domain E3384_10985 PF00672 HAMP domain E3384_10985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3384_10985 PF02203 Tar ligand binding domain homologue E3384_10990 PF03466 LysR substrate binding domain E3384_10990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_10995 PF07063 Domain of unknown function (DUF1338) E3384_11000 PF00135 Carboxylesterase family E3384_11005 PF04349 Periplasmic glucan biosynthesis protein, MdoG E3384_11010 PF04264 YceI-like domain E3384_11015 PF01070 FMN-dependent dehydrogenase E3384_11020 PF00583 Acetyltransferase (GNAT) family E3384_11025 PF08220 DeoR-like helix-turn-helix domain E3384_11025 PF00455 DeoR C terminal sensor domain E3384_11030 PF00834 Ribulose-phosphate 3 epimerase family E3384_11035 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3384_11040 PF03437 BtpA family E3384_11045 PF03611 PTS system sugar-specific permease component E3384_11050 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3384_11055 PF05343 M42 glutamyl aminopeptidase E3384_11060 PF13302 Acetyltransferase (GNAT) domain E3384_11065 PF18836 Beta solenoid repeat from YDCK E3384_11070 PF03595 Voltage-dependent anion channel E3384_11075 PF03848 Tellurite resistance protein TehB E3384_11080 PF11769 Protein of unknown function (DUF3313) E3384_11085 PF03594 Benzoate membrane transport protein E3384_11090 PF01381 Helix-turn-helix E3384_11090 PF07883 Cupin domain E3384_11095 PF01136 Peptidase family U32 E3384_11095 PF12392 Collagenase E3384_11100 PF10829 Protein of unknown function (DUF2554) E3384_11105 PF06767 Sif protein E3384_11120 PF01427 D-ala-D-ala dipeptidase E3384_11125 PF00155 Aminotransferase class I and II E3384_11125 PF00392 Bacterial regulatory proteins, gntR family E3384_11130 PF00171 Aldehyde dehydrogenase family E3384_11140 PF10753 Toxin GhoT_OrtT E3384_11160 PF10735 Protein of unknown function (DUF2526) E3384_11165 PF04657 Putative inner membrane exporter, YdcZ E3384_11175 PF00107 Zinc-binding dehydrogenase E3384_11175 PF16884 N-terminal domain of oxidoreductase E3384_11180 PF07729 FCD domain E3384_11180 PF00392 Bacterial regulatory proteins, gntR family E3384_11185 PF07715 TonB-dependent Receptor Plug Domain E3384_11185 PF00593 TonB dependent receptor E3384_11195 PF06004 Bacterial protein of unknown function (DUF903) E3384_11200 PF00324 Amino acid permease E3384_11215 PF00797 N-acetyltransferase E3384_11220 PF02567 Phenazine biosynthesis-like protein E3384_11225 PF02665 Nitrate reductase gamma subunit E3384_11230 PF02613 Nitrate reductase delta subunit E3384_11235 PF13247 4Fe-4S dicluster domain E3384_11235 PF14711 Respiratory nitrate reductase beta C-terminal E3384_11240 PF14710 Respiratory nitrate reductase alpha N-terminal E3384_11240 PF01568 Molydopterin dinucleotide binding domain E3384_11240 PF00384 Molybdopterin oxidoreductase E3384_11245 PF07690 Major Facilitator Superfamily E3384_11250 PF00440 Bacterial regulatory proteins, tetR family E3384_11255 PF07690 Major Facilitator Superfamily E3384_11265 PF00267 Gram-negative porin E3384_11270 PF00892 EamA-like transporter family E3384_11280 PF12800 4Fe-4S binding domain E3384_11280 PF13247 4Fe-4S dicluster domain E3384_11280 PF09163 Formate dehydrogenase N, transmembrane E3384_11285 PF01292 Prokaryotic cytochrome b561 E3384_11290 PF00107 Zinc-binding dehydrogenase E3384_11290 PF08240 Alcohol dehydrogenase GroES-like domain E3384_11295 PF03949 Malic enzyme, NAD binding domain E3384_11295 PF00390 Malic enzyme, N-terminal domain E3384_11300 PF08136 30S ribosomal protein subunit S22 family E3384_11305 PF10684 Putative biofilm-dependent modulation protein E3384_11310 PF02566 OsmC-like protein E3384_11315 PF06411 HdeA/HdeB family E3384_11325 PF00128 Alpha amylase, catalytic domain E3384_11325 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) E3384_11325 PF11941 Domain of unknown function (DUF3459) E3384_11330 PF00128 Alpha amylase, catalytic domain E3384_11335 PF00128 Alpha amylase, catalytic domain E3384_11335 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) E3384_11340 PF00155 Aminotransferase class I and II E3384_11345 PF03553 Na+/H+ antiporter family E3384_11350 PF00356 Bacterial regulatory proteins, lacI family E3384_11395 PF01042 Endoribonuclease L-PSP E3384_11400 PF02547 Queuosine biosynthesis protein E3384_11410 PF01494 FAD binding domain E3384_11415 PF07690 Major Facilitator Superfamily E3384_11425 PF07690 Major Facilitator Superfamily E3384_11430 PF00107 Zinc-binding dehydrogenase E3384_11430 PF08240 Alcohol dehydrogenase GroES-like domain E3384_11435 PF00392 Bacterial regulatory proteins, gntR family E3384_11435 PF07729 FCD domain E3384_11445 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E3384_11445 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal E3384_11450 PF00374 Nickel-dependent hydrogenase E3384_11455 PF01292 Prokaryotic cytochrome b561 E3384_11460 PF01750 Hydrogenase maturation protease E3384_11465 PF01455 HupF/HypC family E3384_11475 PF04809 HupH hydrogenase expression protein, C-terminal conserved region E3384_11485 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA E3384_11490 PF00267 Gram-negative porin E3384_11500 PF01062 Bestrophin, RFP-TM, chloride channel E3384_11505 PF13811 Domain of unknown function (DUF4186) E3384_11510 PF04960 Glutaminase E3384_11515 PF00171 Aldehyde dehydrogenase family E3384_11520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_11520 PF03466 LysR substrate binding domain E3384_11525 PF07690 Major Facilitator Superfamily E3384_11530 PF01914 MarC family integral membrane protein E3384_11535 PF01047 MarR family E3384_11540 PF12833 Helix-turn-helix domain E3384_11545 PF13999 MarB protein E3384_11550 PF00892 EamA-like transporter family E3384_11555 PF07690 Major Facilitator Superfamily E3384_11565 PF04076 Bacterial OB fold (BOF) protein E3384_11570 PF02464 Competence-damaged protein E3384_11575 PF10685 Stress-induced bacterial acidophilic repeat motif E3384_11585 PF01432 Peptidase family M3 E3384_11590 PF00106 short chain dehydrogenase E3384_11595 PF07729 FCD domain E3384_11595 PF00392 Bacterial regulatory proteins, gntR family E3384_11600 PF14001 YdfZ protein E3384_11605 PF01232 Mannitol dehydrogenase Rossmann domain E3384_11605 PF08125 Mannitol dehydrogenase C-terminal domain E3384_11610 PF00083 Sugar (and other) transporter E3384_11610 PF07690 Major Facilitator Superfamily E3384_11615 PF00107 Zinc-binding dehydrogenase E3384_11615 PF08240 Alcohol dehydrogenase GroES-like domain E3384_11620 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain E3384_11620 PF13378 Enolase C-terminal domain-like E3384_11625 PF02694 Uncharacterised BCR, YnfA/UPF0060 family E3384_11630 PF06932 Protein of unknown function (DUF1283) E3384_11635 PF13302 Acetyltransferase (GNAT) domain E3384_11640 PF06788 Uncharacterised protein family (UPF0257) E3384_11645 PF06649 Protein of unknown function (DUF1161) E3384_11650 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3384_11650 PF01568 Molydopterin dinucleotide binding domain E3384_11650 PF00384 Molybdopterin oxidoreductase E3384_11655 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3384_11655 PF01568 Molydopterin dinucleotide binding domain E3384_11655 PF00384 Molybdopterin oxidoreductase E3384_11660 PF13247 4Fe-4S dicluster domain E3384_11660 PF12800 4Fe-4S binding domain E3384_11665 PF04976 DMSO reductase anchor subunit (DmsC) E3384_11670 PF02613 Nitrate reductase delta subunit E3384_11675 PF00528 Binding-protein-dependent transport system inner membrane component E3384_11680 PF04069 Substrate binding domain of ABC-type glycine betaine transport system E3384_11685 PF00528 Binding-protein-dependent transport system inner membrane component E3384_11690 PF00571 CBS domain E3384_11690 PF00005 ABC transporter E3384_11695 PF00654 Voltage gated chloride channel E3384_11705 PF00480 ROK family E3384_11710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_11710 PF03466 LysR substrate binding domain E3384_11715 PF07690 Major Facilitator Superfamily E3384_11725 PF00089 Trypsin E3384_11730 PF00893 Small Multidrug Resistance protein E3384_11735 PF00893 Small Multidrug Resistance protein E3384_11745 PF01594 AI-2E family transporter E3384_11750 PF02233 NAD(P) transhydrogenase beta subunit E3384_11755 PF01262 Alanine dehydrogenase/PNT, C-terminal domain E3384_11755 PF05222 Alanine dehydrogenase/PNT, N-terminal domain E3384_11755 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch E3384_11760 PF07338 Protein of unknown function (DUF1471) E3384_11765 PF13520 Amino acid permease E3384_11770 PF06942 GlpM protein E3384_11775 PF00486 Transcriptional regulatory protein, C terminal E3384_11775 PF00072 Response regulator receiver domain E3384_11785 PF00267 Gram-negative porin E3384_11790 PF01979 Amidohydrolase family E3384_11790 PF13382 Adenine deaminase C-terminal domain E3384_11795 PF00672 HAMP domain E3384_11795 PF00512 His Kinase A (phospho-acceptor) domain E3384_11795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_11800 PF05472 DNA replication terminus site-binding protein (Ter protein) E3384_11805 PF00206 Lyase E3384_11805 PF10415 Fumarase C C-terminus E3384_11810 PF05683 Fumarase C-terminus E3384_11810 PF05681 Fumarate hydratase (Fumerase) E3384_11815 PF01238 Phosphomannose isomerase type I E3384_11820 PF06097 Bacterial protein of unknown function (DUF945) E3384_11830 PF00155 Aminotransferase class I and II E3384_11835 PF00962 Adenosine/AMP deaminase E3384_11840 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E3384_11840 PF02894 Oxidoreductase family, C-terminal alpha/beta domain E3384_11850 PF05321 Haemolysin expression modulating protein E3384_11855 PF10754 Protein of unknown function (DUF2569) E3384_11860 PF02508 Rnf-Nqr subunit, membrane protein E3384_11865 PF04060 Putative Fe-S cluster E3384_11870 PF10531 SLBB domain E3384_11870 PF13375 RnfC Barrel sandwich hybrid domain E3384_11870 PF12838 4Fe-4S dicluster domain E3384_11870 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E3384_11875 PF03116 NQR2, RnfD, RnfE family E3384_11880 PF04205 FMN-binding domain E3384_11885 PF02508 Rnf-Nqr subunit, membrane protein E3384_11890 PF00633 Helix-hairpin-helix motif E3384_11890 PF00730 HhH-GPD superfamily base excision DNA repair protein E3384_11890 PF10576 Iron-sulfur binding domain of endonuclease III E3384_11895 PF00854 POT family E3384_11900 PF02798 Glutathione S-transferase, N-terminal domain E3384_11900 PF00043 Glutathione S-transferase, C-terminal domain E3384_11905 PF08543 Phosphomethylpyrimidine kinase E3384_11910 PF01479 S4 domain E3384_11910 PF00579 tRNA synthetases class I (W and Y) E3384_11915 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region E3384_11915 PF01243 Pyridoxamine 5'-phosphate oxidase E3384_11920 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme E3384_11925 PF03702 Anhydro-N-acetylmuramic acid kinase E3384_11930 PF05433 Glycine zipper 2TM domain E3384_11935 PF01047 MarR family E3384_11940 PF07869 Protein of unknown function (DUF1656) E3384_11945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3384_11945 PF00529 HlyD membrane-fusion protein of T1SS E3384_11950 PF04632 Fusaric acid resistance protein family E3384_11955 PF00080 Copper/zinc superoxide dismutase (SODC) E3384_11960 PF00248 Aldo/keto reductase family E3384_11965 PF06945 Protein of unknown function (DUF1289) E3384_11970 PF00440 Bacterial regulatory proteins, tetR family E3384_11970 PF16925 Tetracyclin repressor-like, C-terminal domain E3384_11975 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E3384_11980 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E3384_11985 PF00929 Exonuclease E3384_11995 PF00462 Glutaredoxin E3384_12000 PF00877 NlpC/P60 family E3384_12005 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain E3384_12005 PF02777 Iron/manganese superoxide dismutases, C-terminal domain E3384_12015 PF00356 Bacterial regulatory proteins, lacI family E3384_12020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_12020 PF03466 LysR substrate binding domain E3384_12025 PF07690 Major Facilitator Superfamily E3384_12035 PF00677 Lumazine binding domain E3384_12040 PF01554 MatE E3384_12055 PF01312 FlhB HrpN YscU SpaS Family E3384_12060 PF01311 Bacterial export proteins, family 1 E3384_12065 PF01313 Bacterial export proteins, family 3 E3384_12070 PF00813 FliP family E3384_12075 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E3384_12090 PF18269 T3SS EscN ATPase C-terminal domain E3384_12090 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3384_12095 PF00771 FHIPEP family E3384_12105 PF07201 HrpJ-like domain E3384_12120 PF01514 Secretory protein of YscJ/FliF family E3384_12160 PF05802 Enterobacterial EspB protein E3384_12165 PF04888 Secretion system effector C (SseC) like family E3384_12175 PF03433 EspA-like secreted protein E3384_12205 PF00672 HAMP domain E3384_12205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_12205 PF00512 His Kinase A (phospho-acceptor) domain E3384_12205 PF01627 Hpt domain E3384_12205 PF00072 Response regulator receiver domain E3384_12205 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) E3384_12210 PF00196 Bacterial regulatory proteins, luxR family E3384_12210 PF00072 Response regulator receiver domain E3384_12215 PF13411 MerR HTH family regulatory protein E3384_12220 PF08349 Protein of unknown function (DUF1722) E3384_12225 PF10965 Protein of unknown function (DUF2767) E3384_12230 PF00196 Bacterial regulatory proteins, luxR family E3384_12230 PF00072 Response regulator receiver domain E3384_12235 PF00512 His Kinase A (phospho-acceptor) domain E3384_12235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_12240 PF13247 4Fe-4S dicluster domain E3384_12245 PF03916 Polysulphide reductase, NrfD E3384_12250 PF00384 Molybdopterin oxidoreductase E3384_12250 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3384_12250 PF01568 Molydopterin dinucleotide binding domain E3384_12255 PF00294 pfkB family carbohydrate kinase E3384_12265 PF00561 alpha/beta hydrolase fold E3384_12270 PF00324 Amino acid permease E3384_12275 PF00224 Pyruvate kinase, barrel domain E3384_12275 PF02887 Pyruvate kinase, alpha/beta domain E3384_12280 PF04728 Lipoprotein leucine-zipper E3384_12285 PF04728 Lipoprotein leucine-zipper E3384_12290 PF04728 Lipoprotein leucine-zipper E3384_12295 PF03734 L,D-transpeptidase catalytic domain E3384_12295 PF01476 LysM domain E3384_12295 PF17969 L,D-transpeptidase C-terminal domain E3384_12300 PF02657 Fe-S metabolism associated domain E3384_12305 PF00266 Aminotransferase class-V E3384_12310 PF01458 Uncharacterized protein family (UPF0051) E3384_12315 PF00005 ABC transporter E3384_12320 PF01458 Uncharacterized protein family (UPF0051) E3384_12325 PF01521 Iron-sulphur cluster biosynthesis E3384_12335 PF15930 Domain of unknown function E3384_12340 PF03061 Thioesterase superfamily E3384_12345 PF02913 FAD linked oxidases, C-terminal domain E3384_12345 PF13183 4Fe-4S dicluster domain E3384_12345 PF01565 FAD binding domain E3384_12350 PF01594 AI-2E family transporter E3384_12360 PF08965 Domain of unknown function (DUF1870) E3384_12365 PF07690 Major Facilitator Superfamily E3384_12370 PF07690 Major Facilitator Superfamily E3384_12375 PF18317 Shikimate 5'-dehydrogenase C-terminal domain E3384_12375 PF08501 Shikimate dehydrogenase substrate binding domain E3384_12380 PF01487 Type I 3-dehydroquinase E3384_12385 PF01144 Coenzyme A transferase E3384_12390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3384_12390 PF02770 Acyl-CoA dehydrogenase, middle domain E3384_12390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3384_12395 PF12833 Helix-turn-helix domain E3384_12395 PF02311 AraC-like ligand binding domain E3384_12400 PF01012 Electron transfer flavoprotein domain E3384_12405 PF00766 Electron transfer flavoprotein FAD-binding domain E3384_12405 PF01012 Electron transfer flavoprotein domain E3384_12410 PF01494 FAD binding domain E3384_12420 PF13193 AMP-binding enzyme C-terminal domain E3384_12420 PF00501 AMP-binding enzyme E3384_12425 PF00391 PEP-utilising enzyme, mobile domain E3384_12425 PF02896 PEP-utilising enzyme, TIM barrel domain E3384_12425 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain E3384_12430 PF03618 Kinase/pyrophosphorylase E3384_12435 PF00793 DAHP synthetase I family E3384_12440 PF10636 Hemin uptake protein hemP E3384_12445 PF02696 Uncharacterized ACR, YdiU/UPF0061 family E3384_12450 PF00563 EAL domain E3384_12455 PF00877 NlpC/P60 family E3384_12460 PF00005 ABC transporter E3384_12465 PF00255 Glutathione peroxidase E3384_12470 PF01032 FecCD transport family E3384_12475 PF00216 Bacterial DNA-binding protein E3384_12480 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain E3384_12480 PF01588 Putative tRNA binding domain E3384_12480 PF03147 Ferredoxin-fold anticodon binding domain E3384_12480 PF03484 tRNA synthetase B5 domain E3384_12480 PF03483 B3/4 domain E3384_12485 PF01409 tRNA synthetases class II core domain (F) E3384_12485 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain E3384_12495 PF00453 Ribosomal protein L20 E3384_12500 PF01632 Ribosomal protein L35 E3384_12505 PF05198 Translation initiation factor IF-3, N-terminal domain E3384_12505 PF00707 Translation initiation factor IF-3, C-terminal domain E3384_12510 PF03129 Anticodon binding domain E3384_12510 PF02824 TGS domain E3384_12510 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E3384_12510 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3384_12515 PF01223 DNA/RNA non-specific endonuclease E3384_12530 PF04338 Protein of unknown function, DUF481 E3384_12535 PF00294 pfkB family carbohydrate kinase E3384_12540 PF11080 Endoribonuclease GhoS E3384_12550 PF14002 YniB-like protein E3384_12555 PF13419 Haloacid dehalogenase-like hydrolase E3384_12560 PF04307 LexA-binding, inner membrane-associated putative hydrolase E3384_12570 PF10729 Cell division activator CedA E3384_12575 PF00199 Catalase E3384_12575 PF06628 Catalase-related immune-responsive E3384_12575 PF18011 C-terminal domain found in long catalases E3384_12580 PF04794 YdjC-like protein E3384_12585 PF11975 Family 4 glycosyl hydrolase C-terminal domain E3384_12585 PF02056 Family 4 glycosyl hydrolase E3384_12590 PF07883 Cupin domain E3384_12590 PF12833 Helix-turn-helix domain E3384_12595 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit E3384_12600 PF02378 Phosphotransferase system, EIIC E3384_12605 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3384_12615 PF04355 SmpA / OmlA family E3384_12620 PF02540 NAD synthase E3384_12630 PF07813 LTXXQ motif family protein E3384_12635 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family E3384_12640 PF04996 Succinylarginine dihydrolase E3384_12645 PF00171 Aldehyde dehydrogenase family E3384_12650 PF04958 Arginine N-succinyltransferase beta subunit E3384_12655 PF00202 Aminotransferase class-III E3384_12660 PF03372 Endonuclease/Exonuclease/phosphatase family E3384_12665 PF00293 NUDIX domain E3384_12670 PF07383 Protein of unknown function (DUF1496) E3384_12675 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain E3384_12675 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase E3384_12680 PF01751 Toprim domain E3384_12680 PF01131 DNA topoisomerase E3384_12685 PF00586 AIR synthase related protein, N-terminal domain E3384_12685 PF02769 AIR synthase related protein, C-terminal domain E3384_12690 PF00881 Nitroreductase family E3384_12695 PF01343 Peptidase family S49 E3384_12700 PF00710 Asparaginase, N-terminal E3384_12700 PF17763 Glutaminase/Asparaginase C-terminal domain E3384_12705 PF00857 Isochorismatase family E3384_12710 PF00083 Sugar (and other) transporter E3384_12715 PF08220 DeoR-like helix-turn-helix domain E3384_12715 PF00455 DeoR C terminal sensor domain E3384_12720 PF00248 Aldo/keto reductase family E3384_12725 PF00294 pfkB family carbohydrate kinase E3384_12730 PF01116 Fructose-bisphosphate aldolase class-II E3384_12735 PF00107 Zinc-binding dehydrogenase E3384_12735 PF08240 Alcohol dehydrogenase GroES-like domain E3384_12740 PF00083 Sugar (and other) transporter E3384_12745 PF08240 Alcohol dehydrogenase GroES-like domain E3384_12745 PF00107 Zinc-binding dehydrogenase E3384_12750 PF07023 Protein of unknown function (DUF1315) E3384_12755 PF01641 SelR domain E3384_12760 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E3384_12760 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E3384_12765 PF01263 Aldose 1-epimerase E3384_12770 PF00248 Aldo/keto reductase family E3384_12775 PF13186 Iron-sulfur cluster-binding domain E3384_12775 PF04055 Radical SAM superfamily E3384_12780 PF06629 MltA-interacting protein MipA E3384_12785 PF08298 PrkA AAA domain E3384_12785 PF06798 PrkA serine protein kinase C-terminal domain E3384_12790 PF04285 Protein of unknown function (DUF444) E3384_12800 PF00990 Diguanylate cyclase, GGDEF domain E3384_12800 PF17155 Gammaproteobacterial periplasmic sensor domain E3384_12805 PF04073 Aminoacyl-tRNA editing domain E3384_12815 PF04284 Protein of unknown function (DUF441) E3384_12820 PF02311 AraC-like ligand binding domain E3384_12820 PF12833 Helix-turn-helix domain E3384_12825 PF07690 Major Facilitator Superfamily E3384_12830 PF04343 Protein of unknown function, DUF488 E3384_12840 PF03891 Domain of unknown function (DUF333) E3384_12850 PF04226 Transglycosylase associated protein E3384_12865 PF08956 Domain of unknown function (DUF1869) E3384_12870 PF09313 Domain of unknown function (DUF1971) E3384_12875 PF01810 LysE type translocator E3384_12880 PF01817 Chorismate mutase type II E3384_12895 PF09278 MerR, DNA binding E3384_12895 PF00376 MerR family regulatory protein E3384_12905 PF13427 Domain of unknown function (DUF4111) E3384_12905 PF01909 Nucleotidyltransferase domain E3384_12910 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment E3384_12925 PF00924 Mechanosensitive ion channel E3384_12930 PF00005 ABC transporter E3384_12935 PF00005 ABC transporter E3384_12940 PF12911 N-terminal TM domain of oligopeptide transport permease C E3384_12940 PF00528 Binding-protein-dependent transport system inner membrane component E3384_12945 PF00528 Binding-protein-dependent transport system inner membrane component E3384_12950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3384_12960 PF01292 Prokaryotic cytochrome b561 E3384_12975 PF00011 Hsp20/alpha crystallin family E3384_13000 PF06316 Enterobacterial Ail/Lom protein E3384_13015 PF00313 'Cold-shock' DNA-binding domain E3384_13020 PF00652 Ricin-type beta-trefoil lectin domain E3384_13025 PF06183 DinI-like family E3384_13045 PF00180 Isocitrate/isopropylmalate dehydrogenase E3384_13050 PF00849 RNA pseudouridylate synthase E3384_13060 PF00293 NUDIX domain E3384_13070 PF04356 Protein of unknown function (DUF489) E3384_13075 PF00206 Lyase E3384_13075 PF08328 Adenylosuccinate lyase C-terminal E3384_13080 PF00072 Response regulator receiver domain E3384_13080 PF00486 Transcriptional regulatory protein, C terminal E3384_13085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_13085 PF08918 PhoQ Sensor E3384_13090 PF08007 Cupin superfamily protein E3384_13100 PF01546 Peptidase family M20/M25/M40 E3384_13100 PF07687 Peptidase dimerisation domain E3384_13105 PF08402 TOBE domain E3384_13105 PF00005 ABC transporter E3384_13110 PF00528 Binding-protein-dependent transport system inner membrane component E3384_13115 PF06767 Sif protein E3384_13120 PF00528 Binding-protein-dependent transport system inner membrane component E3384_13125 PF13416 Bacterial extracellular solute-binding protein E3384_13130 PF02146 Sir2 family E3384_13135 PF00480 ROK family E3384_13140 PF02687 FtsX-like permease family E3384_13140 PF12704 MacB-like periplasmic core domain E3384_13145 PF00005 ABC transporter E3384_13150 PF02687 FtsX-like permease family E3384_13150 PF12704 MacB-like periplasmic core domain E3384_13155 PF17757 UvrB interaction domain E3384_13155 PF03461 TRCF domain E3384_13155 PF00271 Helicase conserved C-terminal domain E3384_13155 PF00270 DEAD/DEAH box helicase E3384_13155 PF02559 CarD-like/TRCF domain E3384_13160 PF03734 L,D-transpeptidase catalytic domain E3384_13160 PF01476 LysM domain E3384_13160 PF17969 L,D-transpeptidase C-terminal domain E3384_13165 PF07338 Protein of unknown function (DUF1471) E3384_13170 PF00440 Bacterial regulatory proteins, tetR family E3384_13175 PF05433 Glycine zipper 2TM domain E3384_13180 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3384_13185 PF05728 Uncharacterised protein family (UPF0227) E3384_13190 PF00933 Glycosyl hydrolase family 3 N terminal domain E3384_13195 PF01636 Phosphotransferase enzyme family E3384_13200 PF13036 Peptidoglycan-synthase activator LpoB E3384_13205 PF07233 Protein of unknown function (DUF1425) E3384_13210 PF01230 HIT domain E3384_13215 PF07715 TonB-dependent Receptor Plug Domain E3384_13215 PF00593 TonB dependent receptor E3384_13220 PF02378 Phosphotransferase system, EIIC E3384_13220 PF00367 phosphotransferase system, EIIB E3384_13225 PF01026 TatD related DNase E3384_13230 PF09115 DNA polymerase III, delta subunit, C terminal E3384_13235 PF02223 Thymidylate kinase E3384_13240 PF02618 YceG-like family E3384_13245 PF01063 Amino-transferase class IV E3384_13250 PF02801 Beta-ketoacyl synthase, C-terminal domain E3384_13250 PF00109 Beta-ketoacyl synthase, N-terminal domain E3384_13255 PF00550 Phosphopantetheine attachment site E3384_13265 PF00698 Acyl transferase domain E3384_13270 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal E3384_13270 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III E3384_13275 PF02504 Fatty acid synthesis protein E3384_13280 PF01783 Ribosomal L32p protein family E3384_13285 PF02620 Large ribosomal RNA subunit accumulation protein YceD E3384_13290 PF02545 Maf-like protein E3384_13305 PF01479 S4 domain E3384_13305 PF00849 RNA pseudouridylate synthase E3384_13315 PF12111 Polyribonucleotide phosphorylase C terminal E3384_13315 PF00575 S1 RNA binding domain E3384_13315 PF10150 Ribonuclease E/G family E3384_13320 PF00669 Bacterial flagellin N-terminal helical region E3384_13325 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3384_13325 PF00460 Flagella basal body rod protein E3384_13330 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase E3384_13330 PF10135 Rod binding protein E3384_13335 PF02119 Flagellar P-ring protein E3384_13340 PF02107 Flagellar L-ring protein E3384_13345 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3384_13345 PF00460 Flagella basal body rod protein E3384_13350 PF00460 Flagella basal body rod protein E3384_13350 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3384_13355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3384_13355 PF07559 Flagellar basal body protein FlaE E3384_13355 PF00460 Flagella basal body rod protein E3384_13360 PF13860 FlgD Ig-like domain E3384_13360 PF13861 FlgD Tudor-like domain E3384_13360 PF03963 Flagellar hook capping protein - N-terminal region E3384_13365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3384_13365 PF00460 Flagella basal body rod protein E3384_13370 PF00460 Flagella basal body rod protein E3384_13375 PF13144 Chaperone for flagella basal body P-ring formation E3384_13380 PF04316 Anti-sigma-28 factor, FlgM E3384_13385 PF05130 FlgN protein E3384_13390 PF03023 Lipid II flippase MurJ E3384_13395 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E3384_13400 PF04337 Protein of unknown function, DUF480 E3384_13405 PF13302 Acetyltransferase (GNAT) domain E3384_13410 PF07690 Major Facilitator Superfamily E3384_13415 PF13417 Glutathione S-transferase, N-terminal domain E3384_13415 PF04399 Glutaredoxin 2, C terminal domain E3384_13420 PF07273 Protein of unknown function (DUF1439) E3384_13425 PF01979 Amidohydrolase family E3384_13430 PF06183 DinI-like family E3384_13435 PF13991 BssS protein family E3384_13440 PF01266 FAD dependent oxidoreductase E3384_13445 PF10968 Protein of unknown function (DUF2770) E3384_13450 PF01292 Prokaryotic cytochrome b561 E3384_13455 PF04264 YceI-like domain E3384_13465 PF03279 Bacterial lipid A biosynthesis acyltransferase E3384_13470 PF07690 Major Facilitator Superfamily E3384_13475 PF13984 MsyB protein E3384_13480 PF07119 Protein of unknown function (DUF1375) E3384_13485 PF00535 Glycosyl transferase family 2 E3384_13490 PF04349 Periplasmic glucan biosynthesis protein, MdoG E3384_13500 PF01757 Acyltransferase family E3384_13505 PF13091 PLD-like domain E3384_13510 PF01661 Macro domain E3384_13520 PF10610 Thin aggregative fimbriae synthesis protein E3384_13525 PF07012 Curlin associated repeat E3384_13530 PF07012 Curlin associated repeat E3384_13535 PF00196 Bacterial regulatory proteins, luxR family E3384_13540 PF10627 Curli assembly protein CsgE E3384_13545 PF10614 Type VIII secretion system (T8SS), CsgF protein E3384_13550 PF03783 Curli production assembly/transport component CsgG E3384_13555 PF06496 Protein of unknown function (DUF1097) E3384_13560 PF02613 Nitrate reductase delta subunit E3384_13565 PF02811 PHP domain E3384_13570 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3384_13585 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E3384_13585 PF02894 Oxidoreductase family, C-terminal alpha/beta domain E3384_13590 PF07690 Major Facilitator Superfamily E3384_13595 PF06178 Oligogalacturonate-specific porin protein (KdgM) E3384_13600 PF01344 Kelch motif E3384_13605 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase E3384_13610 PF00474 Sodium:solute symporter family E3384_13615 PF01380 SIS domain E3384_13615 PF01418 Helix-turn-helix domain, rpiR family E3384_13620 PF02562 PhoH-like protein E3384_13625 PF00474 Sodium:solute symporter family E3384_13630 PF01619 Proline dehydrogenase E3384_13630 PF00171 Aldehyde dehydrogenase family E3384_13630 PF18327 Proline utilization A proline dehydrogenase N-terminal domain E3384_13630 PF14850 DNA-binding domain of Proline dehydrogenase E3384_13640 PF00440 Bacterial regulatory proteins, tetR family E3384_13640 PF08362 YcdC-like protein, C-terminal region E3384_13645 PF10685 Stress-induced bacterial acidophilic repeat motif E3384_13650 PF03358 NADPH-dependent FMN reductase E3384_13655 PF13993 YccJ-like protein E3384_13660 PF00328 Histidine phosphatase superfamily (branch 2) E3384_13665 PF00578 AhpC/TSA family E3384_13670 PF13462 Thioredoxin E3384_13670 PF06965 Na+/H+ antiporter 1 E3384_13675 PF11412 Disulphide bond corrector protein DsbC E3384_13675 PF13098 Thioredoxin-like domain E3384_13675 PF02683 Cytochrome C biogenesis protein transmembrane region E3384_13685 PF00226 DnaJ domain E3384_13685 PF01556 DnaJ C terminal domain E3384_13705 PF12706 Beta-lactamase superfamily domain E3384_13715 PF07690 Major Facilitator Superfamily E3384_13720 PF03328 HpcH/HpaI aldolase/citrate lyase family E3384_13725 PF01557 Fumarylacetoacetate (FAA) hydrolase family E3384_13730 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase E3384_13735 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase E3384_13740 PF00171 Aldehyde dehydrogenase family E3384_13745 PF01557 Fumarylacetoacetate (FAA) hydrolase family E3384_13750 PF01047 MarR family E3384_13755 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal E3384_13755 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal E3384_13760 PF01613 Flavin reductase like domain E3384_13765 PF00576 HIUase/Transthyretin family E3384_13770 PF00072 Response regulator receiver domain E3384_13770 PF00486 Transcriptional regulatory protein, C terminal E3384_13775 PF00512 His Kinase A (phospho-acceptor) domain E3384_13775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_13780 PF03577 Peptidase family C69 E3384_13790 PF13132 Domain of unknown function (DUF3950) E3384_13795 PF05925 Enterobacterial virulence protein IpgD E3384_13800 PF07824 Type III secretion chaperone domain E3384_13810 PF00805 Pentapeptide repeats (8 copies) E3384_13825 PF01027 Inhibitor of apoptosis-promoting Bax1 E3384_13830 PF04358 DsrC like protein E3384_13835 PF00708 Acylphosphatase E3384_13840 PF12833 Helix-turn-helix domain E3384_13845 PF01161 Phosphatidylethanolamine-binding protein E3384_13850 PF17785 PUA-like domain E3384_13850 PF10672 S-adenosylmethionine-dependent methyltransferase E3384_13855 PF08755 Hemimethylated DNA-binding protein YccV like E3384_13860 PF13380 CoA binding domain E3384_13865 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) E3384_13870 PF02142 MGS-like domain E3384_13875 PF00580 UvrD/REP helicase N-terminal domain E3384_13875 PF12462 DNA helicase IV / RNA helicase N terminal E3384_13875 PF13361 UvrD-like helicase C-terminal domain E3384_13880 PF03733 Inner membrane component domain E3384_13885 PF12805 FUSC-like inner membrane protein yccS E3384_13890 PF04994 TfoX C-terminal domain E3384_13890 PF04993 TfoX N-terminal domain E3384_13895 PF03846 Cell division inhibitor SulA E3384_13900 PF00691 OmpA family E3384_13900 PF01389 OmpA-like transmembrane domain E3384_13905 PF06303 MatP N-terminal domain E3384_13905 PF17414 MatP C-terminal ribbon-helix-helix domain E3384_13910 PF05362 Lon protease (S16) C-terminal proteolytic domain E3384_13910 PF13654 AAA domain E3384_13915 PF07977 FabA-like domain E3384_13920 PF04957 Ribosome modulation factor E3384_13925 PF03886 ABC-type transport auxiliary lipoprotein component E3384_13930 PF02470 MlaD protein E3384_13935 PF04403 Paraquat-inducible protein A E3384_13940 PF00005 ABC transporter E3384_13940 PF16326 ABC transporter C-terminal domain E3384_13940 PF12848 ABC transporter E3384_13945 PF01170 Putative RNA methylase family UPF0020 E3384_13945 PF02926 THUMP domain E3384_13945 PF10672 S-adenosylmethionine-dependent methyltransferase E3384_13950 PF00111 2Fe-2S iron-sulfur cluster binding domain E3384_13950 PF03476 MOSC N-terminal beta barrel domain E3384_13950 PF03473 MOSC domain E3384_13955 PF07126 Cell-division protein ZapC E3384_13960 PF01180 Dihydroorotate dehydrogenase E3384_13965 PF11940 Domain of unknown function (DUF3458) Ig-like fold E3384_13965 PF17432 Domain of unknown function (DUF3458_C) ARM repeats E3384_13965 PF01433 Peptidase family M1 domain E3384_13970 PF06183 DinI-like family E3384_13990 PF02413 Caudovirales tail fibre assembly protein, lambda gpK E3384_13995 PF03335 Phage tail fibre repeat E3384_13995 PF08400 Prophage tail fibre N-terminal E3384_13995 PF07484 Phage Tail Collar Domain E3384_14060 PF07282 Putative transposase DNA-binding domain E3384_14060 PF12323 Helix-turn-helix domain E3384_14060 PF01385 Probable transposase E3384_14075 PF03864 Phage major capsid protein E E3384_14085 PF01343 Peptidase family S49 E3384_14095 PF02831 gpW E3384_14100 PF02413 Caudovirales tail fibre assembly protein, lambda gpK E3384_14105 PF07471 Phage DNA packaging protein Nu1 E3384_14110 PF04151 Bacterial pre-peptidase C-terminal domain E3384_14115 PF03245 Bacteriophage Rz lysis protein E3384_14145 PF03589 Antitermination protein E3384_14185 PF01695 IstB-like ATP binding protein E3384_14230 PF12684 PDDEXK-like domain of unknown function (DUF3799) E3384_14230 PF06630 Enterobacterial exodeoxyribonuclease VIII E3384_14250 PF12167 Arm DNA-binding domain E3384_14250 PF00589 Phage integrase family E3384_14255 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain E3384_14255 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family E3384_14260 PF01235 Sodium:alanine symporter family E3384_14265 PF00291 Pyridoxal-phosphate dependent enzyme E3384_14275 PF01037 Lrp/AsnC ligand binding domain E3384_14275 PF13404 AsnC-type helix-turn-helix domain E3384_14280 PF01336 OB-fold nucleic acid binding domain E3384_14280 PF00152 tRNA synthetases class II (D, K and N) E3384_14285 PF00267 Gram-negative porin E3384_14290 PF00155 Aminotransferase class I and II E3384_14295 PF00753 Metallo-beta-lactamase superfamily E3384_14300 PF05951 Bacterial protein of unknown function (DUF882) E3384_14305 PF01471 Putative peptidoglycan binding domain E3384_14305 PF03734 L,D-transpeptidase catalytic domain E3384_14315 PF04310 MukB N-terminal E3384_14315 PF16330 MukB hinge domain E3384_14320 PF04288 MukE-like family E3384_14325 PF17192 MukF middle domain E3384_14325 PF17193 MukF C-terminal domain E3384_14325 PF03882 MukF winged-helix domain E3384_14330 PF13847 Methyltransferase domain E3384_14335 PF02698 DUF218 domain E3384_14340 PF01636 Phosphotransferase enzyme family E3384_14350 PF02348 Cytidylyltransferase E3384_14355 PF03966 Trm112p-like protein E3384_14360 PF06224 Winged helix DNA-binding domain E3384_14365 PF02606 Tetraacyldisaccharide-1-P 4'-kinase E3384_14370 PF00664 ABC transporter transmembrane region E3384_14370 PF00005 ABC transporter E3384_14375 PF00753 Metallo-beta-lactamase superfamily E3384_14375 PF03772 Competence protein E3384_14380 PF00216 Bacterial DNA-binding protein E3384_14385 PF00575 S1 RNA binding domain E3384_14390 PF02224 Cytidylate kinase E3384_14395 PF01435 Peptidase family M48 E3384_14400 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E3384_14405 PF00266 Aminotransferase class-V E3384_14410 PF04239 Protein of unknown function (DUF421) E3384_14415 PF18381 YcaO cyclodehydratase C-terminal domain E3384_14415 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding E3384_14420 PF01226 Formate/nitrite transporter E3384_14430 PF11047 Salmonella outer protein D E3384_14440 PF04055 Radical SAM superfamily E3384_14445 PF13520 Amino acid permease E3384_14450 PF07690 Major Facilitator Superfamily E3384_14455 PF04976 DMSO reductase anchor subunit (DmsC) E3384_14460 PF12800 4Fe-4S binding domain E3384_14460 PF13247 4Fe-4S dicluster domain E3384_14465 PF00384 Molybdopterin oxidoreductase E3384_14465 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3384_14465 PF01568 Molydopterin dinucleotide binding domain E3384_14470 PF02403 Seryl-tRNA synthetase N-terminal domain E3384_14470 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3384_14475 PF16193 AAA C-terminal domain E3384_14475 PF12002 MgsA AAA+ ATPase C terminal E3384_14475 PF00004 ATPase family associated with various cellular activities (AAA) E3384_14480 PF03548 Outer membrane lipoprotein carrier protein LolA E3384_14485 PF01580 FtsK/SpoIIIE family E3384_14485 PF13491 4TM region of DNA translocase FtsK/SpoIIIE E3384_14485 PF09397 Ftsk gamma domain E3384_14485 PF17854 FtsK alpha domain E3384_14490 PF01037 Lrp/AsnC ligand binding domain E3384_14495 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3384_14500 PF00664 ABC transporter transmembrane region E3384_14500 PF00005 ABC transporter E3384_14505 PF00664 ABC transporter transmembrane region E3384_14505 PF00005 ABC transporter E3384_14510 PF03588 Leucyl/phenylalanyl-tRNA protein transferase E3384_14520 PF01176 Translation initiation factor 1A / IF-1 E3384_14525 PF03466 LysR substrate binding domain E3384_14525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_14530 PF05726 Pirin C-terminal cupin domain E3384_14530 PF02678 Pirin E3384_14535 PF00857 Isochorismatase family E3384_14550 PF00004 ATPase family associated with various cellular activities (AAA) E3384_14550 PF07724 AAA domain (Cdc48 subfamily) E3384_14550 PF10431 C-terminal, D2-small domain, of ClpB protein E3384_14550 PF02861 Clp amino terminal domain, pathogenicity island component E3384_14550 PF17871 AAA lid domain E3384_14555 PF02617 ATP-dependent Clp protease adaptor protein ClpS E3384_14560 PF00313 'Cold-shock' DNA-binding domain E3384_14565 PF12704 MacB-like periplasmic core domain E3384_14565 PF00005 ABC transporter E3384_14565 PF02687 FtsX-like permease family E3384_14570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3384_14575 PF04393 Protein of unknown function (DUF535) E3384_14580 PF11398 Protein of unknown function (DUF2813) E3384_14585 PF03956 Lysine exporter LysO E3384_14590 PF03063 Prismane/CO dehydrogenase family E3384_14595 PF00111 2Fe-2S iron-sulfur cluster binding domain E3384_14595 PF00175 Oxidoreductase NAD-binding domain E3384_14595 PF00970 Oxidoreductase FAD-binding domain E3384_14600 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3384_14600 PF00205 Thiamine pyrophosphate enzyme, central domain E3384_14600 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3384_14605 PF01212 Beta-eliminating lyase E3384_14610 PF11066 Protein of unknown function (DUF2867) E3384_14610 PF13460 NAD(P)H-binding E3384_14615 PF01370 NAD dependent epimerase/dehydratase family E3384_14620 PF01510 N-acetylmuramoyl-L-alanine amidase E3384_14625 PF01906 Putative heavy-metal-binding E3384_14630 PF12883 Protein of unknown function (DUF3828) E3384_14635 PF00005 ABC transporter E3384_14640 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3384_14645 PF00528 Binding-protein-dependent transport system inner membrane component E3384_14650 PF00528 Binding-protein-dependent transport system inner membrane component E3384_14655 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3384_14670 PF03611 PTS system sugar-specific permease component E3384_14675 PF05958 tRNA (Uracil-5-)-methyltransferase E3384_14680 PF10767 Protein of unknown function (DUF2593) E3384_14685 PF00528 Binding-protein-dependent transport system inner membrane component E3384_14690 PF00528 Binding-protein-dependent transport system inner membrane component E3384_14695 PF00005 ABC transporter E3384_14695 PF08402 TOBE domain E3384_14700 PF13416 Bacterial extracellular solute-binding protein E3384_14705 PF10722 Putative bacterial sensory transduction regulator E3384_14710 PF08443 RimK-like ATP-grasp domain E3384_14710 PF18030 RimK PreATP-grasp domain E3384_14715 PF00881 Nitroreductase family E3384_14720 PF07214 Protein of unknown function (DUF1418) E3384_14725 PF00462 Glutaredoxin E3384_14730 PF11045 Putative inner membrane protein of Enterobacteriaceae E3384_14735 PF06826 Predicted Permease Membrane Region E3384_14735 PF02080 TrkA-C domain E3384_14745 PF00440 Bacterial regulatory proteins, tetR family E3384_14750 PF07690 Major Facilitator Superfamily E3384_14760 PF07690 Major Facilitator Superfamily E3384_14765 PF01569 PAP2 superfamily E3384_14770 PF08220 DeoR-like helix-turn-helix domain E3384_14770 PF00455 DeoR C terminal sensor domain E3384_14775 PF00768 D-alanyl-D-alanine carboxypeptidase E3384_14775 PF07943 Penicillin-binding protein 5, C-terminal domain E3384_14780 PF00043 Glutathione S-transferase, C-terminal domain E3384_14780 PF13417 Glutathione S-transferase, N-terminal domain E3384_14785 PF07995 Glucose / Sorbosone dehydrogenase E3384_14800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_14800 PF03466 LysR substrate binding domain E3384_14815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3384_14815 PF02770 Acyl-CoA dehydrogenase, middle domain E3384_14815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3384_14825 PF00766 Electron transfer flavoprotein FAD-binding domain E3384_14825 PF01012 Electron transfer flavoprotein domain E3384_14830 PF01012 Electron transfer flavoprotein domain E3384_14835 PF03328 HpcH/HpaI aldolase/citrate lyase family E3384_14840 PF10799 Biofilm formation protein (YliH/bssR) E3384_14845 PF18693 TRAM domain E3384_14845 PF04055 Radical SAM superfamily E3384_14845 PF00919 Uncharacterized protein family UPF0004 E3384_14850 PF12911 N-terminal TM domain of oligopeptide transport permease C E3384_14850 PF00528 Binding-protein-dependent transport system inner membrane component E3384_14855 PF00528 Binding-protein-dependent transport system inner membrane component E3384_14860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3384_14865 PF00005 ABC transporter E3384_14865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3384_14870 PF01112 Asparaginase E3384_14875 PF00994 Probable molybdopterin binding domain E3384_14875 PF03454 MoeA C-terminal region (domain IV) E3384_14875 PF03453 MoeA N-terminal region (domain I and II) E3384_14880 PF00899 ThiF family E3384_14885 PF04055 Radical SAM superfamily E3384_14900 PF07350 Protein of unknown function (DUF1479) E3384_14905 PF12848 ABC transporter E3384_14905 PF00005 ABC transporter E3384_14910 PF17969 L,D-transpeptidase C-terminal domain E3384_14910 PF03734 L,D-transpeptidase catalytic domain E3384_14915 PF03600 Citrate transporter E3384_14920 PF01325 Iron dependent repressor, N-terminal DNA binding domain E3384_14920 PF02742 Iron dependent repressor, metal binding and dimerisation domain E3384_14930 PF00884 Sulfatase E3384_14935 PF13505 Outer membrane protein beta-barrel domain E3384_14940 PF00892 EamA-like transporter family E3384_14945 PF00210 Ferritin-like domain E3384_14950 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3384_14955 PF00528 Binding-protein-dependent transport system inner membrane component E3384_14960 PF00005 ABC transporter E3384_14965 PF00924 Mechanosensitive ion channel E3384_14970 PF05971 RNA methyltransferase E3384_14975 PF01258 Prokaryotic dksA/traR C4-type zinc finger E3384_14980 PF07338 Protein of unknown function (DUF1471) E3384_14985 PF02885 Glycosyl transferase family, helical bundle domain E3384_14990 PF06733 DEAD_2 E3384_14990 PF13307 Helicase C-terminal domain E3384_14995 PF00270 DEAD/DEAH box helicase E3384_14995 PF00271 Helicase conserved C-terminal domain E3384_15000 PF09209 Tetracyclin repressor-like, C-terminal domain E3384_15000 PF00440 Bacterial regulatory proteins, tetR family E3384_15005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3384_15010 PF00005 ABC transporter E3384_15025 PF11076 Putative inner membrane protein YbhQ E3384_15030 PF03372 Endonuclease/Exonuclease/phosphatase family E3384_15035 PF13091 PLD-like domain E3384_15040 PF03706 Lysylphosphatidylglycerol synthase TM region E3384_15060 PF01027 Inhibitor of apoptosis-promoting Bax1 E3384_15065 PF02391 MoaE protein E3384_15070 PF02597 ThiS family E3384_15075 PF01967 MoaC family E3384_15080 PF00994 Probable molybdopterin binding domain E3384_15085 PF06463 Molybdenum Cofactor Synthesis C E3384_15085 PF04055 Radical SAM superfamily E3384_15090 PF01933 Uncharacterised protein family UPF0052 E3384_15095 PF12468 Type III secretion system leucine rich repeat protein E3384_15095 PF14496 C-terminal novel E3 ligase, LRR-interacting E3384_15105 PF02151 UvrB/uvrC motif E3384_15105 PF00271 Helicase conserved C-terminal domain E3384_15105 PF12344 Ultra-violet resistance protein B E3384_15105 PF17757 UvrB interaction domain E3384_15105 PF04851 Type III restriction enzyme, res subunit E3384_15120 PF08241 Methyltransferase domain E3384_15125 PF00155 Aminotransferase class I and II E3384_15130 PF04055 Radical SAM superfamily E3384_15130 PF06968 Biotin and Thiamin Synthesis associated domain E3384_15135 PF00202 Aminotransferase class-III E3384_15140 PF01161 Phosphatidylethanolamine-binding protein E3384_15145 PF00221 Aromatic amino acid lyase E3384_15150 PF01175 Urocanase Rossmann-like domain E3384_15150 PF17391 Urocanase N-terminal domain E3384_15150 PF17392 Urocanase C-terminal domain E3384_15155 PF00392 Bacterial regulatory proteins, gntR family E3384_15155 PF07702 UTRA domain E3384_15160 PF00491 Arginase family E3384_15165 PF01979 Amidohydrolase family E3384_15170 PF01095 Pectinesterase E3384_15175 PF10282 Lactonase, 7-bladed beta-propeller E3384_15185 PF00005 ABC transporter E3384_15185 PF03459 TOBE domain E3384_15190 PF00528 Binding-protein-dependent transport system inner membrane component E3384_15200 PF10766 Multidrug efflux pump-associated protein AcrZ E3384_15205 PF03459 TOBE domain E3384_15205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_15210 PF00005 ABC transporter E3384_15220 PF16363 GDP-mannose 4,6 dehydratase E3384_15225 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain E3384_15225 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain E3384_15230 PF00288 GHMP kinases N terminal domain E3384_15230 PF08544 GHMP kinases C terminal E3384_15230 PF10509 Galactokinase galactose-binding signature E3384_15235 PF01263 Aldose 1-epimerase E3384_15240 PF00300 Histidine phosphatase superfamily (branch 1) E3384_15245 PF00005 ABC transporter E3384_15250 PF01032 FecCD transport family E3384_15255 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase E3384_15265 PF00682 HMGL-like E3384_15265 PF02436 Conserved carboxylase domain E3384_15265 PF00364 Biotin-requiring enzyme E3384_15270 PF04277 Oxaloacetate decarboxylase, gamma chain E3384_15275 PF02080 TrkA-C domain E3384_15275 PF03600 Citrate transporter E3384_15280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_15280 PF03466 LysR substrate binding domain E3384_15285 PF03466 LysR substrate binding domain E3384_15285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_15290 PF05681 Fumarate hydratase (Fumerase) E3384_15295 PF05683 Fumarase C-terminus E3384_15295 PF05681 Fumarate hydratase (Fumerase) E3384_15300 PF00793 DAHP synthetase I family E3384_15305 PF13985 YbgS-like protein E3384_15310 PF01545 Cation efflux family E3384_15315 PF04973 Nicotinamide mononucleotide transporter E3384_15320 PF02445 Quinolinate synthetase A protein E3384_15350 PF16331 TolA binding protein trimerisation E3384_15350 PF13174 Tetratricopeptide repeat E3384_15355 PF00691 OmpA family E3384_15360 PF07676 WD40-like Beta Propeller Repeat E3384_15360 PF04052 TolB amino-terminal domain E3384_15365 PF06519 TolA C-terminal E3384_15370 PF02472 Biopolymer transport protein ExbD/TolR E3384_15375 PF01618 MotA/TolQ/ExbB proton channel family E3384_15380 PF03061 Thioesterase superfamily E3384_15385 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) E3384_15390 PF08173 Membrane bound YbgT-like protein E3384_15395 PF02322 Cytochrome bd terminal oxidase subunit II E3384_15400 PF01654 Cytochrome bd terminal oxidase subunit I E3384_15405 PF02629 CoA binding domain E3384_15405 PF00549 CoA-ligase E3384_15410 PF00549 CoA-ligase E3384_15410 PF08442 ATP-grasp domain E3384_15415 PF02817 e3 binding domain E3384_15415 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3384_15415 PF00364 Biotin-requiring enzyme E3384_15420 PF16870 2-oxoglutarate dehydrogenase C-terminal E3384_15420 PF00676 Dehydrogenase E1 component E3384_15420 PF16078 2-oxoglutarate dehydrogenase N-terminus E3384_15420 PF02779 Transketolase, pyrimidine binding domain E3384_15425 PF13085 2Fe-2S iron-sulfur cluster binding domain E3384_15430 PF02910 Fumarate reductase flavoprotein C-term E3384_15430 PF00890 FAD binding domain E3384_15435 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit E3384_15440 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit E3384_15445 PF00285 Citrate synthase, C-terminal domain E3384_15450 PF05145 Transition state regulatory protein AbrB E3384_15455 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain E3384_15455 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain E3384_15455 PF06827 Zinc finger found in FPG and IleRS E3384_15460 PF03746 LamB/YcsF family E3384_15465 PF02626 Carboxyltransferase domain, subdomain A and B E3384_15470 PF02682 Carboxyltransferase domain, subdomain C and D E3384_15475 PF01784 NIF3 (NGG1p interacting factor 3) E3384_15480 PF00854 POT family E3384_15485 PF00875 DNA photolyase E3384_15485 PF03441 FAD binding domain of DNA photolyase E3384_15490 PF10725 Protein of unknown function (DUF2517) E3384_15495 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) E3384_15500 PF03814 Potassium-transporting ATPase A subunit E3384_15510 PF02669 K+-transporting ATPase, c chain E3384_15515 PF02702 Osmosensitive K+ channel His kinase sensor domain E3384_15515 PF00512 His Kinase A (phospho-acceptor) domain E3384_15515 PF13492 GAF domain E3384_15515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_15515 PF13493 Domain of unknown function (DUF4118) E3384_15520 PF00072 Response regulator receiver domain E3384_15520 PF00486 Transcriptional regulatory protein, C terminal E3384_15530 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain E3384_15530 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain E3384_15530 PF01276 Orn/Lys/Arg decarboxylase, major domain E3384_15535 PF13520 Amino acid permease E3384_15545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3384_15545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3384_15545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3384_15545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3384_15550 PF03925 SeqA protein C-terminal domain E3384_15550 PF17206 SeqA protein N-terminal domain E3384_15555 PF12697 Alpha/beta hydrolase family E3384_15560 PF01402 Ribbon-helix-helix protein, copG family E3384_15565 PF00258 Flavodoxin E3384_15570 PF01475 Ferric uptake regulator family E3384_15575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_15575 PF03466 LysR substrate binding domain E3384_15580 PF00890 FAD binding domain E3384_15580 PF14537 Cytochrome c3 E3384_15590 PF07690 Major Facilitator Superfamily E3384_15595 PF13982 YbfN-like lipoprotein E3384_15600 PF03573 outer membrane porin, OprD family E3384_15605 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3384_15605 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain E3384_15610 PF02378 Phosphotransferase system, EIIC E3384_15610 PF00367 phosphotransferase system, EIIB E3384_15610 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 E3384_15615 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase E3384_15620 PF01979 Amidohydrolase family E3384_15625 PF00480 ROK family E3384_15625 PF01047 MarR family E3384_15630 PF13344 Haloacid dehalogenase-like hydrolase E3384_15635 PF13537 Glutamine amidotransferase domain E3384_15635 PF00733 Asparagine synthase E3384_15675 PF01494 FAD binding domain E3384_15680 PF04055 Radical SAM superfamily E3384_15680 PF00919 Uncharacterized protein family UPF0004 E3384_15680 PF01938 TRAM domain E3384_15685 PF02562 PhoH-like protein E3384_15690 PF02130 Uncharacterized protein family UPF0054 E3384_15695 PF03471 Transporter associated domain E3384_15695 PF00571 CBS domain E3384_15700 PF00795 Carbon-nitrogen hydrolase E3384_15705 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3384_15710 PF00528 Binding-protein-dependent transport system inner membrane component E3384_15715 PF00528 Binding-protein-dependent transport system inner membrane component E3384_15720 PF00005 ABC transporter E3384_15725 PF01156 Inosine-uridine preferring nucleoside hydrolase E3384_15735 PF00012 Hsp70 protein E3384_15745 PF06889 Protein of unknown function (DUF1266) E3384_15755 PF06889 Protein of unknown function (DUF1266) E3384_15765 PF07295 Zinc-ribbon containing domain E3384_15770 PF00158 Sigma-54 interaction domain E3384_15770 PF00989 PAS fold E3384_15770 PF02954 Bacterial regulatory protein, Fis family E3384_15775 PF03812 2-keto-3-deoxygluconate permease E3384_15780 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus E3384_15790 PF08264 Anticodon-binding domain of tRNA E3384_15790 PF00133 tRNA synthetases class I (I, L, M and V) E3384_15790 PF13603 Leucyl-tRNA synthetase, Domain 2 E3384_15795 PF04390 Lipopolysaccharide-assembly E3384_15800 PF14840 Processivity clamp loader gamma complex DNA pol III C-term E3384_15800 PF06144 DNA polymerase III, delta subunit E3384_15805 PF01467 Cytidylyltransferase-like E3384_15810 PF00155 Aminotransferase class I and II E3384_15815 PF00300 Histidine phosphatase superfamily (branch 1) E3384_15825 PF02590 Predicted SPOUT methyltransferase E3384_15830 PF00905 Penicillin binding protein transpeptidase domain E3384_15830 PF03717 Penicillin-binding Protein dimerisation domain E3384_15835 PF01098 Cell cycle protein E3384_15840 PF03330 Lytic transglycolase E3384_15840 PF05036 Sporulation related domain E3384_15845 PF00768 D-alanyl-D-alanine carboxypeptidase E3384_15845 PF07943 Penicillin-binding protein 5, C-terminal domain E3384_15850 PF04359 Protein of unknown function (DUF493) E3384_15855 PF03099 Biotin/lipoate A/B protein ligase family E3384_15860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_15860 PF03466 LysR substrate binding domain E3384_15865 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family E3384_15865 PF04055 Radical SAM superfamily E3384_15870 PF02416 mttA/Hcf106 family E3384_15875 PF00795 Carbon-nitrogen hydrolase E3384_15880 PF02537 CrcB-like protein, Camphor Resistance (CrcB) E3384_15885 PF00313 'Cold-shock' DNA-binding domain E3384_15890 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP E3384_15895 PF03606 C4-dicarboxylate anaerobic carrier E3384_15900 PF12431 Transcriptional regulator E3384_15900 PF00072 Response regulator receiver domain E3384_15905 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain E3384_15905 PF17203 Single cache domain 3 E3384_15905 PF00989 PAS fold E3384_15905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_15910 PF08218 Citrate lyase ligase C-terminal domain E3384_15915 PF06857 Malonate decarboxylase delta subunit (MdcD) E3384_15920 PF03328 HpcH/HpaI aldolase/citrate lyase family E3384_15925 PF04223 Citrate lyase, alpha subunit (CitF) E3384_15930 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase E3384_15935 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase E3384_15940 PF00939 Sodium:sulfate symporter transmembrane region E3384_15945 PF00445 Ribonuclease T2 family E3384_15950 PF14760 Rnk N-terminus E3384_15950 PF01272 Transcription elongation factor, GreA/GreB, C-term E3384_15955 PF08240 Alcohol dehydrogenase GroES-like domain E3384_15955 PF00107 Zinc-binding dehydrogenase E3384_15955 PF13823 Alcohol dehydrogenase GroES-associated E3384_15960 PF00582 Universal stress protein family E3384_15970 PF13247 4Fe-4S dicluster domain E3384_15975 PF01568 Molydopterin dinucleotide binding domain E3384_15975 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3384_15975 PF00384 Molybdopterin oxidoreductase E3384_15985 PF13192 Thioredoxin domain E3384_15985 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3384_15990 PF10417 C-terminal domain of 1-Cys peroxiredoxin E3384_15990 PF00578 AhpC/TSA family E3384_15995 PF13098 Thioredoxin-like domain E3384_16005 PF11922 Domain of unknown function (DUF3440) E3384_16005 PF01507 Phosphoadenosine phosphosulfate reductase family E3384_16010 PF02195 ParB-like nuclease domain E3384_16015 PF00155 Aminotransferase class I and II E3384_16020 PF00465 Iron-containing alcohol dehydrogenase E3384_16025 PF04328 Selenoprotein, putative E3384_16030 PF02554 Carbon starvation protein CstA E3384_16030 PF13722 5TM C-terminal transporter carbon starvation CstA E3384_16035 PF03061 Thioesterase superfamily E3384_16045 PF00550 Phosphopantetheine attachment site E3384_16045 PF00857 Isochorismatase family E3384_16050 PF00501 AMP-binding enzyme E3384_16050 PF13193 AMP-binding enzyme C-terminal domain E3384_16055 PF00425 chorismate binding enzyme E3384_16060 PF01497 Periplasmic binding protein E3384_16065 PF05977 Transmembrane secretion effector E3384_16070 PF01032 FecCD transport family E3384_16075 PF01032 FecCD transport family E3384_16080 PF00005 ABC transporter E3384_16085 PF02706 Chain length determinant protein E3384_16090 PF00668 Condensation domain E3384_16090 PF00975 Thioesterase domain E3384_16090 PF00501 AMP-binding enzyme E3384_16090 PF13193 AMP-binding enzyme C-terminal domain E3384_16090 PF00550 Phosphopantetheine attachment site E3384_16095 PF03621 MbtH-like protein E3384_16100 PF11806 Domain of unknown function (DUF3327) E3384_16100 PF00756 Putative esterase E3384_16105 PF00593 TonB dependent receptor E3384_16105 PF07715 TonB-dependent Receptor Plug Domain E3384_16110 PF01648 4'-phosphopantetheinyl transferase superfamily E3384_16110 PF17837 4'-phosphopantetheinyl transferase N-terminal domain E3384_16115 PF04107 Glutamate-cysteine ligase family 2(GCS2) E3384_16120 PF06643 Protein of unknown function (DUF1158) E3384_16125 PF12833 Helix-turn-helix domain E3384_16130 PF16295 Tetracyclin repressor-like, C-terminal domain E3384_16130 PF00440 Bacterial regulatory proteins, tetR family E3384_16135 PF04237 YjbR E3384_16140 PF00881 Nitroreductase family E3384_16150 PF03830 PTS system sorbose subfamily IIB component E3384_16160 PF03613 PTS system mannose/fructose/sorbose family IID component E3384_16170 PF01380 SIS domain E3384_16175 PF00158 Sigma-54 interaction domain E3384_16175 PF00874 PRD domain E3384_16175 PF03610 PTS system fructose IIA component E3384_16180 PF03797 Autotransporter beta-domain E3384_16180 PF00657 GDSL-like Lipase/Acylhydrolase E3384_16185 PF00924 Mechanosensitive ion channel E3384_16190 PF00324 Amino acid permease E3384_16200 PF04224 Protein of unknown function, DUF417 E3384_16205 PF07338 Protein of unknown function (DUF1471) E3384_16210 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3384_16210 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3384_16215 PF12852 Cupin E3384_16215 PF12833 Helix-turn-helix domain E3384_16220 PF00873 AcrB/AcrD/AcrF family E3384_16225 PF00672 HAMP domain E3384_16225 PF00512 His Kinase A (phospho-acceptor) domain E3384_16225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_16235 PF04138 GtrA-like protein E3384_16240 PF00535 Glycosyl transferase family 2 E3384_16265 PF00535 Glycosyl transferase family 2 E3384_16270 PF04138 GtrA-like protein E3384_16285 PF00589 Phage integrase family E3384_16300 PF00196 Bacterial regulatory proteins, luxR family E3384_16315 PF00196 Bacterial regulatory proteins, luxR family E3384_16315 PF00072 Response regulator receiver domain E3384_16320 PF00419 Fimbrial protein E3384_16325 PF00419 Fimbrial protein E3384_16330 PF13954 PapC N-terminal domain E3384_16330 PF13953 PapC C-terminal domain E3384_16330 PF00577 Outer membrane usher protein E3384_16335 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3384_16335 PF02753 Pili assembly chaperone PapD, C-terminal domain E3384_16345 PF00419 Fimbrial protein E3384_16355 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain E3384_16355 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain E3384_16365 PF04307 LexA-binding, inner membrane-associated putative hydrolase E3384_16380 PF01406 tRNA synthetases class I (C) catalytic domain E3384_16380 PF09190 DALR domain E3384_16385 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD E3384_16390 PF12850 Calcineurin-like phosphoesterase superfamily domain E3384_16395 PF00731 AIR carboxylase E3384_16400 PF02222 ATP-grasp domain E3384_16400 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain E3384_16405 PF00696 Amino acid kinase family E3384_16410 PF11392 Protein of unknown function (DUF2877) E3384_16415 PF06545 Protein of unknown function (DUF1116) E3384_16420 PF02629 CoA binding domain E3384_16420 PF00549 CoA-ligase E3384_16425 PF02615 Malate/L-lactate dehydrogenase E3384_16430 PF01546 Peptidase family M20/M25/M40 E3384_16435 PF05899 Protein of unknown function (DUF861) E3384_16435 PF07883 Cupin domain E3384_16440 PF02595 Glycerate kinase family E3384_16445 PF00860 Permease family E3384_16450 PF01979 Amidohydrolase family E3384_16455 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin E3384_16465 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E3384_16465 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E3384_16470 PF01261 Xylose isomerase-like TIM barrel E3384_16475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3384_16475 PF00205 Thiamine pyrophosphate enzyme, central domain E3384_16475 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3384_16480 PF01614 Bacterial transcriptional regulator E3384_16480 PF09339 IclR helix-turn-helix domain E3384_16485 PF04115 Ureidoglycolate lyase E3384_16490 PF03466 LysR substrate binding domain E3384_16490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_16500 PF00528 Binding-protein-dependent transport system inner membrane component E3384_16505 PF00005 ABC transporter E3384_16505 PF09383 NIL domain E3384_16510 PF03180 NLPA lipoprotein E3384_16525 PF00005 ABC transporter E3384_16530 PF13472 GDSL-like Lipase/Acylhydrolase family E3384_16535 PF00106 short chain dehydrogenase E3384_16540 PF00085 Thioredoxin E3384_16545 PF03649 Uncharacterised protein family (UPF0014) E3384_16550 PF00005 ABC transporter E3384_16555 PF01145 SPFH domain / Band 7 family E3384_16555 PF16200 C-terminal region of band_7 E3384_16560 PF01957 NfeD-like C-terminal, partner-binding E3384_16565 PF13411 MerR HTH family regulatory protein E3384_16570 PF00403 Heavy-metal-associated domain E3384_16580 PF01963 TraB family E3384_16585 PF04073 Aminoacyl-tRNA editing domain E3384_16590 PF00149 Calcineurin-like phosphoesterase E3384_16590 PF02872 5'-nucleotidase, C-terminal domain E3384_16595 PF07690 Major Facilitator Superfamily E3384_16600 PF00999 Sodium/hydrogen exchanger family E3384_16600 PF02254 TrkA-N domain E3384_16605 PF00294 pfkB family carbohydrate kinase E3384_16610 PF07859 alpha/beta hydrolase fold E3384_16615 PF00762 Ferrochelatase E3384_16620 PF05191 Adenylate kinase, active site lid E3384_16625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_16625 PF00183 Hsp90 protein E3384_16630 PF13662 Toprim domain E3384_16630 PF02132 RecR protein E3384_16635 PF02575 YbaB/EbfC DNA-binding family E3384_16640 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding E3384_16640 PF12170 DNA polymerase III tau subunit V interacting with alpha E3384_16640 PF12169 DNA polymerase III subunits gamma and tau domain III E3384_16645 PF00156 Phosphoribosyl transferase domain E3384_16650 PF04304 Protein of unknown function (DUF454) E3384_16655 PF07445 Primosomal replication protein priC E3384_16660 PF10689 Protein of unknown function (DUF2496) E3384_16665 PF04754 Putative transposase, YhgA-like E3384_16670 PF00924 Mechanosensitive ion channel E3384_16670 PF12795 Mechanosensitive ion channel porin domain E3384_16670 PF12794 Mechanosensitive ion channel inner membrane domain 1 E3384_16675 PF08361 MAATS-type transcriptional repressor, C-terminal region E3384_16675 PF00440 Bacterial regulatory proteins, tetR family E3384_16680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3384_16680 PF00529 HlyD membrane-fusion protein of T1SS E3384_16685 PF00873 AcrB/AcrD/AcrF family E3384_16690 PF10757 Biofilm formation regulator YbaJ E3384_16695 PF05321 Haemolysin expression modulating protein E3384_16700 PF12464 Maltose acetyltransferase E3384_16700 PF14602 Hexapeptide repeat of succinyl-transferase E3384_16705 PF10777 Inner membrane protein YlaC E3384_16710 PF00444 Ribosomal protein L36 E3384_16715 PF01197 Ribosomal protein L31 E3384_16720 PF00563 EAL domain E3384_16720 PF12792 CSS motif domain associated with EAL E3384_16730 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E3384_16735 PF09619 Type III secretion system lipoprotein chaperone (YscW) E3384_16745 PF00909 Ammonium Transporter Family E3384_16750 PF00543 Nitrogen regulatory protein P-II E3384_16755 PF00664 ABC transporter transmembrane region E3384_16755 PF00005 ABC transporter E3384_16760 PF00664 ABC transporter transmembrane region E3384_16760 PF00005 ABC transporter E3384_16765 PF01037 Lrp/AsnC ligand binding domain E3384_16765 PF13404 AsnC-type helix-turn-helix domain E3384_16780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3384_16780 PF12793 Sugar transport-related sRNA regulator N-term E3384_16785 PF06508 Queuosine biosynthesis protein QueC E3384_16800 PF13145 PPIC-type PPIASE domain E3384_16805 PF00216 Bacterial DNA-binding protein E3384_16810 PF00004 ATPase family associated with various cellular activities (AAA) E3384_16810 PF02190 ATP-dependent protease La (LON) substrate-binding domain E3384_16810 PF05362 Lon protease (S16) C-terminal proteolytic domain E3384_16815 PF07724 AAA domain (Cdc48 subfamily) E3384_16815 PF10431 C-terminal, D2-small domain, of ClpB protein E3384_16815 PF06689 ClpX C4-type zinc finger E3384_16820 PF00574 Clp protease E3384_16825 PF05698 Bacterial trigger factor protein (TF) C-terminus E3384_16825 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3384_16825 PF05697 Bacterial trigger factor protein (TF) E3384_16835 PF01722 BolA-like protein E3384_16840 PF03923 Uncharacterized lipoprotein E3384_16840 PF08139 Prokaryotic membrane lipoprotein lipid attachment site E3384_16845 PF07690 Major Facilitator Superfamily E3384_16850 PF00116 Cytochrome C oxidase subunit II, periplasmic domain E3384_16850 PF06481 COX Aromatic Rich Motif E3384_16855 PF00115 Cytochrome C and Quinol oxidase polypeptide I E3384_16860 PF00510 Cytochrome c oxidase subunit III E3384_16865 PF03626 Prokaryotic Cytochrome C oxidase subunit IV E3384_16870 PF01040 UbiA prenyltransferase family E3384_16885 PF07690 Major Facilitator Superfamily E3384_16890 PF04461 Protein of unknown function (DUF520) E3384_16895 PF02558 Ketopantoate reductase PanE/ApbA E3384_16895 PF08546 Ketopantoate reductase PanE/ApbA C terminal E3384_16900 PF01965 DJ-1/PfpI family E3384_16910 PF00266 Aminotransferase class-V E3384_16915 PF07702 UTRA domain E3384_16915 PF00392 Bacterial regulatory proteins, gntR family E3384_16920 PF01547 Bacterial extracellular solute-binding protein E3384_16925 PF08402 TOBE domain E3384_16925 PF00005 ABC transporter E3384_16930 PF00528 Binding-protein-dependent transport system inner membrane component E3384_16935 PF00528 Binding-protein-dependent transport system inner membrane component E3384_16940 PF02926 THUMP domain E3384_16940 PF02568 Thiamine biosynthesis protein (ThiI) E3384_16945 PF02609 Exonuclease VII small subunit E3384_16950 PF00348 Polyprenyl synthetase E3384_16955 PF13292 1-deoxy-D-xylulose-5-phosphate synthase E3384_16955 PF02779 Transketolase, pyrimidine binding domain E3384_16955 PF02780 Transketolase, C-terminal domain E3384_16960 PF00248 Aldo/keto reductase family E3384_16965 PF04608 Phosphatidylglycerophosphatase A E3384_16970 PF00586 AIR synthase related protein, N-terminal domain E3384_16970 PF02769 AIR synthase related protein, C-terminal domain E3384_16975 PF01029 NusB family E3384_16980 PF00885 6,7-dimethyl-8-ribityllumazine synthase E3384_16985 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region E3384_16985 PF01872 RibD C-terminal domain E3384_16990 PF03477 ATP cone domain E3384_16995 PF11622 Protein of unknown function (DUF3251) E3384_17000 PF03502 Nucleoside-specific channel-forming protein, Tsx E3384_17015 PF01844 HNH endonuclease E3384_17030 PF07549 SecD/SecF GG Motif E3384_17030 PF02355 Protein export membrane protein E3384_17035 PF02355 Protein export membrane protein E3384_17035 PF13721 SecD export protein N-terminal TM region E3384_17035 PF07549 SecD/SecF GG Motif E3384_17040 PF02699 Preprotein translocase subunit E3384_17045 PF01702 Queuine tRNA-ribosyltransferase E3384_17050 PF02547 Queuosine biosynthesis protein E3384_17055 PF04336 Acyl carrier protein phosphodiesterase E3384_17060 PF00578 AhpC/TSA family E3384_17060 PF10417 C-terminal domain of 1-Cys peroxiredoxin E3384_17065 PF00128 Alpha amylase, catalytic domain E3384_17065 PF02903 Alpha amylase, N-terminal ig-like domain E3384_17070 PF00324 Amino acid permease E3384_17075 PF05525 Branched-chain amino acid transport protein E3384_17080 PF11808 Phosphate regulon sensor protein PhoR E3384_17080 PF00989 PAS fold E3384_17080 PF00512 His Kinase A (phospho-acceptor) domain E3384_17080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_17085 PF00072 Response regulator receiver domain E3384_17085 PF00486 Transcriptional regulatory protein, C terminal E3384_17090 PF00149 Calcineurin-like phosphoesterase E3384_17090 PF12320 Type 5 capsule protein repressor C-terminal domain E3384_17095 PF13476 AAA domain E3384_17100 PF07690 Major Facilitator Superfamily E3384_17105 PF00480 ROK family E3384_17110 PF04381 Putative exonuclease, RdgC E3384_17115 PF06865 Pyrimidine/purine nucleoside phosphorylase E3384_17120 PF07302 AroM protein E3384_17125 PF16362 YaiA protein E3384_17130 PF01202 Shikimate kinase E3384_17135 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 E3384_17140 PF03807 NADP oxidoreductase coenzyme F420-dependent E3384_17140 PF14748 Pyrroline-5-carboxylate reductase dimerisation E3384_17145 PF05230 MASE2 domain E3384_17145 PF00990 Diguanylate cyclase, GGDEF domain E3384_17150 PF07769 psiF repeat E3384_17155 PF10796 Sigma-S stabilisation anti-adaptor protein E3384_17160 PF07690 Major Facilitator Superfamily E3384_17170 PF01820 D-ala D-ala ligase N-terminus E3384_17170 PF07478 D-ala D-ala ligase C-terminus E3384_17175 PF10953 Protein of unknown function (DUF2754) E3384_17180 PF10954 Protein of unknown function (DUF2755) E3384_17185 PF07759 Protein of unknown function (DUF1615) E3384_17190 PF05992 SbmA/BacA-like family E3384_17200 PF00144 Beta-lactamase E3384_17205 PF15977 Winged helix-turn-helix DNA binding E3384_17210 PF03797 Autotransporter beta-domain E3384_17215 PF00490 Delta-aminolevulinic acid dehydratase E3384_17220 PF16177 Acetyl-coenzyme A synthetase N-terminus E3384_17220 PF00501 AMP-binding enzyme E3384_17220 PF13193 AMP-binding enzyme C-terminal domain E3384_17225 PF03972 MmgE/PrpD family E3384_17230 PF00285 Citrate synthase, C-terminal domain E3384_17240 PF06506 Propionate catabolism activator E3384_17240 PF00158 Sigma-54 interaction domain E3384_17240 PF02954 Bacterial regulatory protein, Fis family E3384_17245 PF07338 Protein of unknown function (DUF1471) E3384_17250 PF01810 LysE type translocator E3384_17255 PF07715 TonB-dependent Receptor Plug Domain E3384_17255 PF00593 TonB dependent receptor E3384_17270 PF02322 Cytochrome bd terminal oxidase subunit II E3384_17275 PF01654 Cytochrome bd terminal oxidase subunit I E3384_17285 PF08774 VRR-NUC domain E3384_17285 PF04851 Type III restriction enzyme, res subunit E3384_17290 PF18273 Type III R-M EcoP15I C-terminal domain E3384_17290 PF01555 DNA methylase E3384_17295 PF07690 Major Facilitator Superfamily E3384_17305 PF00376 MerR family regulatory protein E3384_17305 PF09278 MerR, DNA binding E3384_17310 PF00403 Heavy-metal-associated domain E3384_17315 PF00529 HlyD membrane-fusion protein of T1SS E3384_17315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3384_17320 PF00873 AcrB/AcrD/AcrF family E3384_17325 PF02321 Outer membrane efflux protein E3384_17345 PF13505 Outer membrane protein beta-barrel domain E3384_17360 PF00563 EAL domain E3384_17360 PF12792 CSS motif domain associated with EAL E3384_17375 PF16970 Type-1 fimbrial protein, A E3384_17380 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3384_17380 PF02753 Pili assembly chaperone PapD, C-terminal domain E3384_17385 PF13953 PapC C-terminal domain E3384_17385 PF00577 Outer membrane usher protein E3384_17385 PF13954 PapC N-terminal domain E3384_17395 PF02753 Pili assembly chaperone PapD, C-terminal domain E3384_17395 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3384_17410 PF03466 LysR substrate binding domain E3384_17410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_17415 PF00561 alpha/beta hydrolase fold E3384_17420 PF01557 Fumarylacetoacetate (FAA) hydrolase family E3384_17425 PF00694 Aconitase C-terminal domain E3384_17430 PF00330 Aconitase family (aconitate hydratase) E3384_17435 PF07690 Major Facilitator Superfamily E3384_17440 PF08986 Domain of unknown function (DUF1889) E3384_17445 PF08841 Diol dehydratase reactivase ATPase-like domain E3384_17445 PF18427 DD-reactivating factor swiveling domain E3384_17450 PF18427 DD-reactivating factor swiveling domain E3384_17450 PF08841 Diol dehydratase reactivase ATPase-like domain E3384_17460 PF00589 Phage integrase family E3384_17460 PF13356 Arm DNA-binding domain E3384_17470 PF00171 Aldehyde dehydrogenase family E3384_17475 PF00696 Amino acid kinase family E3384_17475 PF01472 PUA domain E3384_17480 PF00267 Gram-negative porin E3384_17485 PF07417 Sigma factor-binding transcriptional regulator Crl E3384_17490 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) E3384_17495 PF00156 Phosphoribosyl transferase domain E3384_17500 PF07687 Peptidase dimerisation domain E3384_17500 PF01546 Peptidase family M20/M25/M40 E3384_17505 PF00472 RF-1 domain E3384_17515 PF11798 IMS family HHH motif E3384_17515 PF11799 impB/mucB/samB family C-terminal domain E3384_17515 PF00817 impB/mucB/samB family E3384_17520 PF03734 L,D-transpeptidase catalytic domain E3384_17525 PF13230 Glutamine amidotransferases class-II E3384_17530 PF13580 SIS domain E3384_17535 PF09317 Domain of unknown function (DUF1974) E3384_17535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3384_17535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3384_17535 PF02770 Acyl-CoA dehydrogenase, middle domain E3384_17540 PF00795 Carbon-nitrogen hydrolase E3384_17550 PF13505 Outer membrane protein beta-barrel domain E3384_17570 PF13404 AsnC-type helix-turn-helix domain E3384_17570 PF01037 Lrp/AsnC ligand binding domain E3384_17615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_17615 PF03466 LysR substrate binding domain E3384_17635 PF13954 PapC N-terminal domain E3384_17635 PF00577 Outer membrane usher protein E3384_17635 PF13953 PapC C-terminal domain E3384_17640 PF02753 Pili assembly chaperone PapD, C-terminal domain E3384_17640 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3384_17670 PF13148 Protein of unknown function (DUF3987) E3384_17700 PF01926 50S ribosome-binding GTPase E3384_17710 PF08220 DeoR-like helix-turn-helix domain E3384_17710 PF13280 WYL domain E3384_17740 PF06006 Bacterial protein of unknown function (DUF905) E3384_17745 PF06067 Domain of unknown function (DUF932) E3384_17760 PF03230 Antirestriction protein E3384_17765 PF04002 RadC-like JAB domain E3384_17775 PF06174 Protein of unknown function (DUF987) E3384_17785 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A E3384_17795 PF06755 CbtA_toxin of type IV toxin-antitoxin system E3384_17820 PF00929 Exonuclease E3384_17825 PF00075 RNase H E3384_17830 PF08241 Methyltransferase domain E3384_17835 PF16123 Hydroxyacylglutathione hydrolase C-terminus E3384_17835 PF00753 Metallo-beta-lactamase superfamily E3384_17840 PF01464 Transglycosylase SLT domain E3384_17840 PF01476 LysM domain E3384_17845 PF08241 Methyltransferase domain E3384_17850 PF03372 Endonuclease/Exonuclease/phosphatase family E3384_17855 PF07690 Major Facilitator Superfamily E3384_17860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_17860 PF03466 LysR substrate binding domain E3384_17865 PF00248 Aldo/keto reductase family E3384_17905 PF00005 ABC transporter E3384_17905 PF09383 NIL domain E3384_17910 PF00528 Binding-protein-dependent transport system inner membrane component E3384_17915 PF03180 NLPA lipoprotein E3384_17920 PF16358 RcsF lipoprotein E3384_17925 PF18389 TrmO C-terminal domain E3384_17925 PF01980 tRNA-methyltransferase O E3384_17930 PF04073 Aminoacyl-tRNA editing domain E3384_17930 PF03129 Anticodon binding domain E3384_17930 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3384_17935 PF04170 NlpE N-terminal domain E3384_17935 PF17185 NlpE C-terminal OB domain E3384_17940 PF00472 RF-1 domain E3384_17945 PF07152 YaeQ protein E3384_17950 PF06786 Uncharacterised protein family (UPF0253) E3384_17955 PF07073 Modulator of Rho-dependent transcription termination (ROF) E3384_17960 PF11734 TilS substrate C-terminal domain E3384_17960 PF01171 PP-loop family E3384_17960 PF09179 TilS substrate binding domain E3384_17965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E3384_17975 PF18416 N-acetylglucosamine binding protein domain 2 E3384_17975 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading E3384_17980 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit E3384_17985 PF07733 Bacterial DNA polymerase III alpha NTPase domain E3384_17985 PF14579 Helix-hairpin-helix motif E3384_17985 PF17657 Bacterial DNA polymerase III alpha subunit finger domain E3384_17985 PF02811 PHP domain E3384_17985 PF01336 OB-fold nucleic acid binding domain E3384_17990 PF01351 Ribonuclease HII E3384_17995 PF02684 Lipid-A-disaccharide synthetase E3384_18000 PF00132 Bacterial transferase hexapeptide (six repeats) E3384_18000 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 E3384_18005 PF07977 FabA-like domain E3384_18010 PF00132 Bacterial transferase hexapeptide (six repeats) E3384_18010 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD E3384_18015 PF03938 Outer membrane protein (OmpH-like) E3384_18020 PF01103 Surface antigen E3384_18020 PF07244 Surface antigen variable number repeat E3384_18025 PF02163 Peptidase family M50 E3384_18025 PF17820 PDZ domain E3384_18035 PF01255 Putative undecaprenyl diphosphate synthase E3384_18040 PF13288 DXP reductoisomerase C-terminal domain E3384_18040 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain E3384_18040 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase E3384_18045 PF01765 Ribosome recycling factor E3384_18050 PF00696 Amino acid kinase family E3384_18055 PF00889 Elongation factor TS E3384_18060 PF00318 Ribosomal protein S2 E3384_18065 PF00557 Metallopeptidase family M24 E3384_18070 PF01909 Nucleotidyltransferase domain E3384_18070 PF08335 GlnD PII-uridylyltransferase E3384_18070 PF01842 ACT domain E3384_18070 PF01966 HD domain E3384_18075 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal E3384_18075 PF00132 Bacterial transferase hexapeptide (six repeats) E3384_18075 PF14602 Hexapeptide repeat of succinyl-transferase E3384_18080 PF07690 Major Facilitator Superfamily E3384_18080 PF00083 Sugar (and other) transporter E3384_18085 PF11944 Protein of unknown function (DUF3461) E3384_18090 PF05651 Putative sugar diacid recognition E3384_18090 PF13556 PucR C-terminal helix-turn-helix domain E3384_18090 PF17853 GGDEF-like domain E3384_18095 PF00595 PDZ domain E3384_18100 PF13286 Phosphohydrolase-associated domain E3384_18100 PF01966 HD domain E3384_18105 PF01048 Phosphorylase superfamily E3384_18110 PF01497 Periplasmic binding protein E3384_18115 PF03458 UPF0126 domain E3384_18120 PF01521 Iron-sulphur cluster biosynthesis E3384_18125 PF00654 Voltage gated chloride channel E3384_18130 PF00202 Aminotransferase class-III E3384_18135 PF11245 Protein of unknown function (DUF2544) E3384_18140 PF00419 Fimbrial protein E3384_18145 PF00419 Fimbrial protein E3384_18150 PF00419 Fimbrial protein E3384_18155 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3384_18155 PF02753 Pili assembly chaperone PapD, C-terminal domain E3384_18160 PF13954 PapC N-terminal domain E3384_18160 PF13953 PapC C-terminal domain E3384_18160 PF00577 Outer membrane usher protein E3384_18175 PF01032 FecCD transport family E3384_18180 PF01497 Periplasmic binding protein E3384_18185 PF00005 ABC transporter E3384_18190 PF07715 TonB-dependent Receptor Plug Domain E3384_18190 PF00593 TonB dependent receptor E3384_18195 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal E3384_18195 PF00912 Transglycosylase E3384_18195 PF00905 Penicillin binding protein transpeptidase domain E3384_18195 PF14814 Bifunctional transglycosylase second domain E3384_18200 PF00270 DEAD/DEAH box helicase E3384_18200 PF08482 ATP-dependent helicase C-terminal E3384_18200 PF04408 Helicase associated domain (HA2) E3384_18200 PF00271 Helicase conserved C-terminal domain E3384_18205 PF02834 LigT like Phosphoesterase E3384_18210 PF17746 SfsA N-terminal OB domain E3384_18210 PF03749 Sugar fermentation stimulation protein RE domain E3384_18215 PF01258 Prokaryotic dksA/traR C4-type zinc finger E3384_18220 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3384_18225 PF12627 Probable RNA and SrmB- binding site of polymerase A E3384_18225 PF01743 Poly A polymerase head domain E3384_18225 PF12626 Polymerase A arginine-rich C-terminus E3384_18230 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) E3384_18235 PF02548 Ketopantoate hydroxymethyltransferase E3384_18240 PF02569 Pantoate-beta-alanine ligase E3384_18245 PF02261 Aspartate decarboxylase E3384_18255 PF02753 Pili assembly chaperone PapD, C-terminal domain E3384_18255 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3384_18260 PF13954 PapC N-terminal domain E3384_18260 PF00577 Outer membrane usher protein E3384_18260 PF13953 PapC C-terminal domain E3384_18265 PF00419 Fimbrial protein E3384_18285 PF01522 Polysaccharide deacetylase E3384_18290 PF03610 PTS system fructose IIA component E3384_18300 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3384_18300 PF02753 Pili assembly chaperone PapD, C-terminal domain E3384_18305 PF13953 PapC C-terminal domain E3384_18305 PF00577 Outer membrane usher protein E3384_18305 PF13954 PapC N-terminal domain E3384_18310 PF00419 Fimbrial protein E3384_18315 PF01061 ABC-2 type transporter E3384_18320 PF00005 ABC transporter E3384_18325 PF00484 Carbonic anhydrase E3384_18330 PF00156 Phosphoribosyl transferase domain E3384_18335 PF01011 PQQ enzyme repeat E3384_18340 PF00394 Multicopper oxidase E3384_18340 PF07731 Multicopper oxidase E3384_18340 PF07732 Multicopper oxidase E3384_18345 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) E3384_18350 PF17284 Spermidine synthase tetramerisation domain E3384_18355 PF02675 S-adenosylmethionine decarboxylase E3384_18360 PF00455 DeoR C terminal sensor domain E3384_18360 PF08220 DeoR-like helix-turn-helix domain E3384_18365 PF04166 Pyridoxal phosphate biosynthetic protein PdxA E3384_18370 PF17042 Nucleotide-binding C-terminal domain E3384_18370 PF07005 Sugar-binding N-terminal domain E3384_18375 PF03812 2-keto-3-deoxygluconate permease E3384_18380 PF06062 Uncharacterised protein family (UPF0231) E3384_18395 PF11791 Aconitate B N-terminal domain E3384_18395 PF00330 Aconitase family (aconitate hydratase) E3384_18395 PF06434 Aconitate hydratase 2 N-terminus E3384_18425 PF06434 Aconitate hydratase 2 N-terminus E3384_18425 PF00330 Aconitase family (aconitate hydratase) E3384_18425 PF11791 Aconitate B N-terminal domain E3384_18430 PF11737 Protein of unknown function (DUF3300) E3384_18445 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3384_18445 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3384_18450 PF00364 Biotin-requiring enzyme E3384_18450 PF02817 e3 binding domain E3384_18450 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3384_18455 PF17831 Pyruvate dehydrogenase E1 component middle domain E3384_18455 PF00456 Transketolase, thiamine diphosphate binding domain E3384_18460 PF00392 Bacterial regulatory proteins, gntR family E3384_18460 PF07729 FCD domain E3384_18465 PF00324 Amino acid permease E3384_18475 PF04616 Glycosyl hydrolases family 43 E3384_18475 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain E3384_18480 PF17113 Regulatory signalling modulator protein AmpE E3384_18485 PF01510 N-acetylmuramoyl-L-alanine amidase E3384_18490 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain E3384_18490 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain E3384_18500 PF07963 Prokaryotic N-terminal methylation motif E3384_18505 PF00437 Type II/IV secretion system protein E3384_18505 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain E3384_18510 PF00482 Type II secretion system (T2SS), protein F E3384_18515 PF00478 IMP dehydrogenase / GMP reductase domain E3384_18520 PF01121 Dephospho-CoA kinase E3384_18525 PF07072 Cell division protein E3384_18530 PF03884 DNA gyrase inhibitor YacG E3384_18545 PF00293 NUDIX domain E3384_18550 PF02810 SEC-C motif E3384_18550 PF01043 SecA preprotein cross-linking domain E3384_18550 PF07516 SecA Wing and Scaffold domain E3384_18550 PF07517 SecA DEAD-like domain E3384_18555 PF06558 Secretion monitor precursor protein (SecM) E3384_18560 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase E3384_18565 PF12327 FtsZ family, C-terminal domain E3384_18565 PF00091 Tubulin/FtsZ family, GTPase domain E3384_18570 PF02491 SHS2 domain inserted in FTSA E3384_18575 PF08478 POTRA domain, FtsQ-type E3384_18575 PF03799 Cell division protein FtsQ E3384_18580 PF07478 D-ala D-ala ligase C-terminus E3384_18580 PF01820 D-ala D-ala ligase N-terminus E3384_18585 PF01225 Mur ligase family, catalytic domain E3384_18585 PF02875 Mur ligase family, glutamate ligase domain E3384_18585 PF08245 Mur ligase middle domain E3384_18590 PF03033 Glycosyltransferase family 28 N-terminal domain E3384_18590 PF04101 Glycosyltransferase family 28 C-terminal domain E3384_18595 PF01098 Cell cycle protein E3384_18600 PF02875 Mur ligase family, glutamate ligase domain E3384_18600 PF08245 Mur ligase middle domain E3384_18605 PF00953 Glycosyl transferase family 4 E3384_18605 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 E3384_18610 PF02875 Mur ligase family, glutamate ligase domain E3384_18610 PF01225 Mur ligase family, catalytic domain E3384_18610 PF08245 Mur ligase middle domain E3384_18615 PF01225 Mur ligase family, catalytic domain E3384_18615 PF08245 Mur ligase middle domain E3384_18615 PF02875 Mur ligase family, glutamate ligase domain E3384_18620 PF03717 Penicillin-binding Protein dimerisation domain E3384_18620 PF00905 Penicillin binding protein transpeptidase domain E3384_18625 PF04999 Cell division protein FtsL E3384_18630 PF01795 MraW methylase family E3384_18635 PF02381 MraZ protein, putative antitoxin-like E3384_18640 PF00356 Bacterial regulatory proteins, lacI family E3384_18640 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family E3384_18645 PF10369 Small subunit of acetolactate synthase E3384_18650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3384_18650 PF00205 Thiamine pyrophosphate enzyme, central domain E3384_18650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3384_18655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_18655 PF03466 LysR substrate binding domain E3384_18660 PF08054 Leucine operon leader peptide E3384_18665 PF00682 HMGL-like E3384_18665 PF08502 LeuA allosteric (dimerisation) domain E3384_18670 PF00180 Isocitrate/isopropylmalate dehydrogenase E3384_18675 PF00330 Aconitase family (aconitate hydratase) E3384_18680 PF00694 Aconitase C-terminal domain E3384_18690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3384_18690 PF12793 Sugar transport-related sRNA regulator N-term E3384_18700 PF00528 Binding-protein-dependent transport system inner membrane component E3384_18705 PF00005 ABC transporter E3384_18710 PF09335 SNARE associated Golgi protein E3384_18715 PF12833 Helix-turn-helix domain E3384_18715 PF02311 AraC-like ligand binding domain E3384_18720 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E3384_18725 PF11762 L-arabinose isomerase C-terminal domain E3384_18725 PF02610 L-arabinose isomerase E3384_18730 PF00596 Class II Aldolase and Adducin N-terminal domain E3384_18750 PF00136 DNA polymerase family B E3384_18750 PF03104 DNA polymerase family B, exonuclease domain E3384_18755 PF18337 RapA N-terminal Tudor like domain E3384_18755 PF00176 SNF2 family N-terminal domain E3384_18755 PF00271 Helicase conserved C-terminal domain E3384_18755 PF12137 RNA polymerase recycling family C-terminal E3384_18755 PF18339 RapA N-terminal Tudor like domain 1 E3384_18760 PF00849 RNA pseudouridylate synthase E3384_18765 PF00226 DnaJ domain E3384_18765 PF05099 Tellurite resistance protein TerB E3384_18770 PF03968 OstA-like protein E3384_18770 PF04453 LPS transport system D E3384_18775 PF00639 PPIC-type PPIASE domain E3384_18775 PF09312 SurA N-terminal domain E3384_18780 PF04166 Pyridoxal phosphate biosynthetic protein PdxA E3384_18785 PF00398 Ribosomal RNA adenine dimethylase E3384_18790 PF04379 ApaG domain E3384_18795 PF00149 Calcineurin-like phosphoesterase E3384_18800 PF00186 Dihydrofolate reductase E3384_18805 PF00999 Sodium/hydrogen exchanger family E3384_18805 PF02254 TrkA-N domain E3384_18810 PF02525 Flavodoxin-like fold E3384_18835 PF06004 Bacterial protein of unknown function (DUF903) E3384_18840 PF00083 Sugar (and other) transporter E3384_18850 PF01494 FAD binding domain E3384_18855 PF00766 Electron transfer flavoprotein FAD-binding domain E3384_18855 PF01012 Electron transfer flavoprotein domain E3384_18860 PF01012 Electron transfer flavoprotein domain E3384_18870 PF02028 BCCT, betaine/carnitine/choline family transporter E3384_18875 PF02770 Acyl-CoA dehydrogenase, middle domain E3384_18875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3384_18875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3384_18880 PF02515 CoA-transferase family III E3384_18885 PF13193 AMP-binding enzyme C-terminal domain E3384_18885 PF00501 AMP-binding enzyme E3384_18890 PF00378 Enoyl-CoA hydratase/isomerase E3384_18895 PF00132 Bacterial transferase hexapeptide (six repeats) E3384_18900 PF07180 CaiF/GrlA transcriptional regulator E3384_18905 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E3384_18905 PF02142 MGS-like domain E3384_18905 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain E3384_18910 PF00117 Glutamine amidotransferase class-I E3384_18910 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain E3384_18920 PF05173 Dihydrodipicolinate reductase, C-terminus E3384_18920 PF01113 Dihydrodipicolinate reductase, N-terminus E3384_18925 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase E3384_18930 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase E3384_18935 PF04223 Citrate lyase, alpha subunit (CitF) E3384_18940 PF03328 HpcH/HpaI aldolase/citrate lyase family E3384_18945 PF06857 Malonate decarboxylase delta subunit (MdcD) E3384_18950 PF08218 Citrate lyase ligase C-terminal domain E3384_18950 PF00583 Acetyltransferase (GNAT) family E3384_18955 PF03390 2-hydroxycarboxylate transporter family E3384_18960 PF04277 Oxaloacetate decarboxylase, gamma chain E3384_18965 PF00682 HMGL-like E3384_18965 PF02436 Conserved carboxylase domain E3384_18965 PF00364 Biotin-requiring enzyme E3384_18970 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit E3384_18975 PF17203 Single cache domain 3 E3384_18975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_18980 PF00072 Response regulator receiver domain E3384_18980 PF12431 Transcriptional regulator E3384_18985 PF01156 Inosine-uridine preferring nucleoside hydrolase E3384_18995 PF02401 LytB protein E3384_19000 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3384_19005 PF01252 Signal peptidase (SPase) II E3384_19010 PF06827 Zinc finger found in FPG and IleRS E3384_19010 PF00133 tRNA synthetases class I (I, L, M and V) E3384_19010 PF08264 Anticodon-binding domain of tRNA E3384_19015 PF01687 Riboflavin kinase E3384_19015 PF06574 FAD synthetase E3384_19020 PF10837 Protein of unknown function (DUF2575) E3384_19025 PF01649 Ribosomal protein S20 E3384_19040 PF03466 LysR substrate binding domain E3384_19040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_19045 PF06965 Na+/H+ antiporter 1 E3384_19060 PF04055 Radical SAM superfamily E3384_19060 PF13186 Iron-sulfur cluster-binding domain E3384_19065 PF00884 Sulfatase E3384_19065 PF16385 Domain of unknown function E3384_19075 PF00149 Calcineurin-like phosphoesterase E3384_19075 PF02872 5'-nucleotidase, C-terminal domain E3384_19090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_19090 PF03466 LysR substrate binding domain E3384_19110 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3384_19110 PF02753 Pili assembly chaperone PapD, C-terminal domain E3384_19115 PF16970 Type-1 fimbrial protein, A E3384_19120 PF00419 Fimbrial protein E3384_19125 PF00419 Fimbrial protein E3384_19130 PF00577 Outer membrane usher protein E3384_19130 PF13954 PapC N-terminal domain E3384_19130 PF13953 PapC C-terminal domain E3384_19135 PF02753 Pili assembly chaperone PapD, C-terminal domain E3384_19135 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3384_19140 PF00419 Fimbrial protein E3384_19155 PF00704 Glycosyl hydrolases family 18 E3384_19175 PF03466 LysR substrate binding domain E3384_19175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_19180 PF00226 DnaJ domain E3384_19180 PF01556 DnaJ C terminal domain E3384_19180 PF00684 DnaJ central domain E3384_19185 PF00012 Hsp70 protein E3384_19190 PF10807 Protein of unknown function (DUF2541) E3384_19195 PF13099 Domain of unknown function (DUF3944) E3384_19195 PF03981 Ubiquinol-cytochrome C chaperone E3384_19200 PF01184 GPR1/FUN34/yaaH family E3384_19205 PF00994 Probable molybdopterin binding domain E3384_19210 PF00923 Transaldolase/Fructose-6-phosphate aldolase E3384_19215 PF01235 Sodium:alanine symporter family E3384_19220 PF03883 Peroxide stress protein YaaA E3384_19225 PF14821 Threonine synthase N terminus E3384_19225 PF00291 Pyridoxal-phosphate dependent enzyme E3384_19230 PF08544 GHMP kinases C terminal E3384_19230 PF00288 GHMP kinases N terminal domain E3384_19235 PF13840 ACT domain E3384_19235 PF01842 ACT domain E3384_19235 PF00742 Homoserine dehydrogenase E3384_19235 PF00696 Amino acid kinase family E3384_19235 PF03447 Homoserine dehydrogenase, NAD binding domain E3384_19240 PF08254 Threonine leader peptide E3384_19245 PF00588 SpoU rRNA Methylase family E3384_19255 PF00072 Response regulator receiver domain E3384_19255 PF00486 Transcriptional regulatory protein, C terminal E3384_19265 PF15977 Winged helix-turn-helix DNA binding E3384_19275 PF02753 Pili assembly chaperone PapD, C-terminal domain E3384_19275 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3384_19280 PF13953 PapC C-terminal domain E3384_19280 PF13954 PapC N-terminal domain E3384_19280 PF00577 Outer membrane usher protein E3384_19295 PF06123 Inner membrane protein CreD E3384_19300 PF00512 His Kinase A (phospho-acceptor) domain E3384_19300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_19300 PF00672 HAMP domain E3384_19305 PF00072 Response regulator receiver domain E3384_19305 PF00486 Transcriptional regulatory protein, C terminal E3384_19310 PF05981 CreA protein E3384_19315 PF06445 GyrI-like small molecule binding domain E3384_19315 PF12833 Helix-turn-helix domain E3384_19320 PF00300 Histidine phosphatase superfamily (branch 1) E3384_19325 PF01931 Protein of unknown function DUF84 E3384_19330 PF01371 Trp repressor protein E3384_19335 PF01464 Transglycosylase SLT domain E3384_19335 PF14718 Soluble lytic murein transglycosylase L domain E3384_19340 PF00005 ABC transporter E3384_19340 PF12848 ABC transporter E3384_19345 PF01381 Helix-turn-helix E3384_19345 PF13521 AAA domain E3384_19350 PF18073 Rubredoxin metal binding domain E3384_19355 PF18429 Domain of unknown function (DUF5609) E3384_19360 PF10144 Bacterial virulence factor haemolysin E3384_19365 PF03099 Biotin/lipoate A/B protein ligase family E3384_19365 PF10437 Bacterial lipoate protein ligase C-terminus E3384_19375 PF06551 Protein of unknown function (DUF1120) E3384_19380 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3384_19385 PF13953 PapC C-terminal domain E3384_19385 PF00577 Outer membrane usher protein E3384_19385 PF13954 PapC N-terminal domain E3384_19395 PF01048 Phosphorylase superfamily E3384_19400 PF01676 Metalloenzyme superfamily E3384_19405 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain E3384_19405 PF00591 Glycosyl transferase family, a/b domain E3384_19405 PF02885 Glycosyl transferase family, helical bundle domain E3384_19410 PF01791 DeoC/LacD family aldolase E3384_19415 PF11230 Protein of unknown function (DUF3029) E3384_19420 PF04055 Radical SAM superfamily E3384_19425 PF01026 TatD related DNase E3384_19430 PF01734 Patatin-like phospholipase E3384_19435 PF07043 Protein of unknown function (DUF1328) E3384_19440 PF04972 BON domain E3384_19445 PF00009 Elongation factor Tu GTP binding domain E3384_19445 PF16658 Class II release factor RF3, C-terminal domain E3384_19445 PF03144 Elongation factor Tu domain 2 E3384_19450 PF13419 Haloacid dehalogenase-like hydrolase E3384_19455 PF00583 Acetyltransferase (GNAT) family E3384_19460 PF03603 DNA polymerase III psi subunit E3384_19465 PF08468 Methyltransferase small domain N-terminal E3384_19465 PF05175 Methyltransferase small domain E3384_19485 PF07256 Protein of unknown function (DUF1435) E3384_19490 PF00990 Diguanylate cyclase, GGDEF domain E3384_19490 PF05230 MASE2 domain E3384_19495 PF06276 Ferric iron reductase FhuF-like transporter E3384_19495 PF11575 FhuF 2Fe-2S C-terminal domain E3384_19500 PF04073 Aminoacyl-tRNA editing domain E3384_19505 PF00196 Bacterial regulatory proteins, luxR family E3384_19510 PF00196 Bacterial regulatory proteins, luxR family E3384_19515 PF06738 Putative threonine/serine exporter E3384_19520 PF12821 Threonine/Serine exporter, ThrE E3384_19525 PF17948 DnaT DNA-binding domain E3384_19530 PF01695 IstB-like ATP binding protein E3384_19535 PF10696 Protein of unknown function (DUF2501) E3384_19540 PF00884 Sulfatase E3384_19545 PF02203 Tar ligand binding domain homologue E3384_19545 PF00672 HAMP domain E3384_19545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3384_19550 PF13722 5TM C-terminal transporter carbon starvation CstA E3384_19550 PF02554 Carbon starvation protein CstA E3384_19555 PF04328 Selenoprotein, putative E3384_19560 PF02492 CobW/HypB/UreG, nucleotide-binding domain E3384_19560 PF07683 Cobalamin synthesis protein cobW C-terminal domain E3384_19595 PF02384 N-6 DNA Methylase E3384_19595 PF12161 HsdM N-terminal domain E3384_19605 PF02384 N-6 DNA Methylase E3384_19610 PF01420 Type I restriction modification DNA specificity domain E3384_19615 PF11867 Domain of unknown function (DUF3387) E3384_19615 PF18766 SWI2/SNF2 ATPase E3384_19615 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) E3384_19635 PF00171 Aldehyde dehydrogenase family E3384_19640 PF04754 Putative transposase, YhgA-like E3384_19645 PF07690 Major Facilitator Superfamily E3384_19650 PF04286 Protein of unknown function (DUF445) E3384_19655 PF06779 Uncharacterised MFS-type transporter YbfB E3384_19660 PF07670 Nucleoside recognition E3384_19665 PF07670 Nucleoside recognition E3384_19670 PF01979 Amidohydrolase family E3384_19675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_19675 PF03466 LysR substrate binding domain E3384_19680 PF01177 Asp/Glu/Hydantoin racemase E3384_19690 PF00579 tRNA synthetases class I (W and Y) E3384_19695 PF07729 FCD domain E3384_19695 PF00392 Bacterial regulatory proteins, gntR family E3384_19700 PF01738 Dienelactone hydrolase family E3384_19705 PF03625 Domain of unknown function DUF302 E3384_19705 PF02537 CrcB-like protein, Camphor Resistance (CrcB) E3384_19725 PF09857 Putative toxin of bacterial toxin-antitoxin pair E3384_19730 PF13847 Methyltransferase domain E3384_19735 PF01709 Transcriptional regulator E3384_19765 PF17345 Family of unknown function (DUF5375) E3384_19795 PF04606 Ogr/Delta-like zinc finger E3384_19810 PF09225 Restriction endonuclease PvuII E3384_19815 PF01381 Helix-turn-helix E3384_19820 PF01555 DNA methylase E3384_19825 PF13356 Arm DNA-binding domain E3384_19825 PF00589 Phage integrase family E3384_19835 PF00107 Zinc-binding dehydrogenase E3384_19835 PF08240 Alcohol dehydrogenase GroES-like domain E3384_19840 PF01202 Shikimate kinase E3384_19845 PF08240 Alcohol dehydrogenase GroES-like domain E3384_19845 PF00107 Zinc-binding dehydrogenase E3384_19850 PF00106 short chain dehydrogenase E3384_19855 PF02447 GntP family permease E3384_19860 PF00356 Bacterial regulatory proteins, lacI family E3384_19865 PF03739 Lipopolysaccharide export system permease LptF/LptG E3384_19870 PF03739 Lipopolysaccharide export system permease LptF/LptG E3384_19875 PF00883 Cytosol aminopeptidase family, catalytic domain E3384_19875 PF02789 Cytosol aminopeptidase family, N-terminal domain E3384_19880 PF04364 DNA polymerase III chi subunit, HolC E3384_19885 PF00133 tRNA synthetases class I (I, L, M and V) E3384_19885 PF10458 Valyl tRNA synthetase tRNA binding arm E3384_19885 PF08264 Anticodon-binding domain of tRNA E3384_19890 PF05987 Bacterial protein of unknown function (DUF898) E3384_19895 PF00583 Acetyltransferase (GNAT) family E3384_19905 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) E3384_19910 PF06877 Regulator of ribonuclease activity B E3384_19915 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E3384_19915 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E3384_19920 PF04074 YhcH/YjgK/YiaL E3384_19930 PF00696 Amino acid kinase family E3384_19935 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E3384_19935 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E3384_19940 PF03606 C4-dicarboxylate anaerobic carrier E3384_19945 PF02863 Arginine repressor, C-terminal domain E3384_19945 PF01316 Arginine repressor, DNA binding domain E3384_19955 PF08052 PyrBI operon leader peptide E3384_19960 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E3384_19960 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E3384_19965 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain E3384_19965 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain E3384_19970 PF01042 Endoribonuclease L-PSP E3384_19975 PF00689 Cation transporting ATPase, C-terminus E3384_19975 PF00690 Cation transporter/ATPase, N-terminus E3384_19980 PF17059 MgtA leader peptide E3384_19985 PF00356 Bacterial regulatory proteins, lacI family E3384_19990 PF00367 phosphotransferase system, EIIB E3384_19990 PF02378 Phosphotransferase system, EIIC E3384_19995 PF11941 Domain of unknown function (DUF3459) E3384_19995 PF00128 Alpha amylase, catalytic domain E3384_20000 PF13597 Anaerobic ribonucleoside-triphosphate reductase E3384_20000 PF03477 ATP cone domain E3384_20010 PF05016 ParE toxin of type II toxin-antitoxin system, parDE E3384_20015 PF04221 RelB antitoxin E3384_20020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3384_20020 PF08279 HTH domain E3384_20020 PF00874 PRD domain E3384_20020 PF05043 Mga helix-turn-helix domain E3384_20025 PF07071 KDGP aldolase E3384_20030 PF03841 L-seryl-tRNA selenium transferase E3384_20035 PF01979 Amidohydrolase family E3384_20065 PF07361 Cytochrome b562 E3384_20070 PF01523 Putative modulator of DNA gyrase E3384_20075 PF04751 Protein of unknown function (DUF615) E3384_20080 PF01261 Xylose isomerase-like TIM barrel E3384_20090 PF07690 Major Facilitator Superfamily E3384_20095 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E3384_20095 PF02894 Oxidoreductase family, C-terminal alpha/beta domain E3384_20100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3384_20100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3384_20100 PF00205 Thiamine pyrophosphate enzyme, central domain E3384_20105 PF00294 pfkB family carbohydrate kinase E3384_20110 PF07690 Major Facilitator Superfamily E3384_20115 PF01261 Xylose isomerase-like TIM barrel E3384_20120 PF17189 Glycosyl hydrolase family 30 beta sandwich domain E3384_20125 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E3384_20125 PF02894 Oxidoreductase family, C-terminal alpha/beta domain E3384_20130 PF01261 Xylose isomerase-like TIM barrel E3384_20145 PF00171 Aldehyde dehydrogenase family E3384_20150 PF04962 KduI/IolB family E3384_20155 PF00083 Sugar (and other) transporter E3384_20160 PF00083 Sugar (and other) transporter E3384_20165 PF02685 Glucokinase E3384_20165 PF01418 Helix-turn-helix domain, rpiR family E3384_20165 PF01380 SIS domain E3384_20170 PF02875 Mur ligase family, glutamate ligase domain E3384_20170 PF08245 Mur ligase middle domain E3384_20170 PF01225 Mur ligase family, catalytic domain E3384_20175 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain E3384_20180 PF00719 Inorganic pyrophosphatase E3384_20185 PF01979 Amidohydrolase family E3384_20190 PF07690 Major Facilitator Superfamily E3384_20195 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like E3384_20200 PF04357 TamB, inner membrane protein subunit of TAM complex E3384_20205 PF01103 Surface antigen E3384_20205 PF07244 Surface antigen variable number repeat E3384_20205 PF17243 POTRA domain TamA domain 1 E3384_20210 PF01625 Peptide methionine sulfoxide reductase E3384_20215 PF00571 CBS domain E3384_20215 PF03471 Transporter associated domain E3384_20215 PF01595 Cyclin M transmembrane N-terminal domain E3384_20220 PF06526 Protein of unknown function (DUF1107) E3384_20225 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) E3384_20230 PF00459 Inositol monophosphatase family E3384_20235 PF02872 5'-nucleotidase, C-terminal domain E3384_20235 PF00149 Calcineurin-like phosphoesterase E3384_20240 PF01638 HxlR-like helix-turn-helix E3384_20245 PF05368 NmrA-like family E3384_20250 PF00892 EamA-like transporter family E3384_20255 PF04405 Domain of Unknown function (DUF542) E3384_20255 PF01814 Hemerythrin HHE cation binding domain E3384_20260 PF00324 Amino acid permease E3384_20265 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E3384_20265 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3384_20270 PF08525 Opacity-associated protein A N-terminal motif E3384_20270 PF04225 Opacity-associated protein A LysM-like domain E3384_20280 PF01281 Ribosomal protein L9, N-terminal domain E3384_20280 PF03948 Ribosomal protein L9, C-terminal domain E3384_20285 PF01084 Ribosomal protein S18 E3384_20290 PF00436 Single-strand binding protein family E3384_20295 PF01250 Ribosomal protein S6 E3384_20310 PF07338 Protein of unknown function (DUF1471) E3384_20315 PF00596 Class II Aldolase and Adducin N-terminal domain E3384_20320 PF01261 Xylose isomerase-like TIM barrel E3384_20325 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family E3384_20330 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3384_20335 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3384_20340 PF03611 PTS system sugar-specific permease component E3384_20350 PF08220 DeoR-like helix-turn-helix domain E3384_20350 PF00455 DeoR C terminal sensor domain E3384_20355 PF00326 Prolyl oligopeptidase family E3384_20360 PF07338 Protein of unknown function (DUF1471) E3384_20365 PF07338 Protein of unknown function (DUF1471) E3384_20370 PF18158 Adaptive response protein AidB N-terminal domain E3384_20370 PF02770 Acyl-CoA dehydrogenase, middle domain E3384_20370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3384_20375 PF03738 Glutathionylspermidine synthase preATP-grasp E3384_20380 PF06693 Protein of unknown function (DUF1190) E3384_20385 PF03994 Domain of Unknown Function (DUF350) E3384_20390 PF10679 Protein of unknown function (DUF2491) E3384_20400 PF04012 PspA/IM30 family E3384_20405 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) E3384_20410 PF08032 RNA 2'-O ribose methyltransferase substrate binding E3384_20410 PF00588 SpoU rRNA Methylase family E3384_20415 PF00773 RNB domain E3384_20415 PF00575 S1 RNA binding domain E3384_20415 PF17876 Cold shock domain E3384_20415 PF08461 Ribonuclease R winged-helix domain E3384_20415 PF08206 Ribonuclease B OB domain E3384_20420 PF02082 Transcriptional regulator E3384_20425 PF00709 Adenylosuccinate synthetase E3384_20430 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) E3384_20435 PF01145 SPFH domain / Band 7 family E3384_20440 PF12221 Bacterial membrane protein N terminal E3384_20440 PF01145 SPFH domain / Band 7 family E3384_20445 PF13167 GTP-binding GTPase N-terminal E3384_20445 PF01926 50S ribosome-binding GTPase E3384_20445 PF16360 GTP-binding GTPase Middle Region E3384_20450 PF17209 Hfq protein E3384_20460 PF01119 DNA mismatch repair protein, C-terminal domain E3384_20460 PF08676 MutL C terminal dimerisation domain E3384_20465 PF01520 N-acetylmuramoyl-L-alanine amidase E3384_20470 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE E3384_20475 PF03853 YjeF-related protein N-terminus E3384_20475 PF01256 Carbohydrate kinase E3384_20480 PF08331 Domain of unknown function (DUF1730) E3384_20500 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3384_20505 PF00929 Exonuclease E3384_20510 PF03193 RsgA GTPase E3384_20515 PF02666 Phosphatidylserine decarboxylase E3384_20520 PF12794 Mechanosensitive ion channel inner membrane domain 1 E3384_20520 PF12795 Mechanosensitive ion channel porin domain E3384_20520 PF00924 Mechanosensitive ion channel E3384_20525 PF10840 Protein of unknown function (DUF2645) E3384_20530 PF13520 Amino acid permease E3384_20535 PF00152 tRNA synthetases class II (D, K and N) E3384_20540 PF00890 FAD binding domain E3384_20540 PF02910 Fumarate reductase flavoprotein C-term E3384_20545 PF13183 4Fe-4S dicluster domain E3384_20545 PF13085 2Fe-2S iron-sulfur cluster binding domain E3384_20550 PF02300 Fumarate reductase subunit C E3384_20555 PF02313 Fumarate reductase subunit D E3384_20560 PF08212 Lipocalin-like domain E3384_20565 PF00893 Small Multidrug Resistance protein E3384_20570 PF00196 Bacterial regulatory proteins, luxR family E3384_20575 PF08085 Entericidin EcnA/B family E3384_20580 PF08085 Entericidin EcnA/B family E3384_20585 PF08207 Elongation factor P (EF-P) KOW-like domain E3384_20585 PF01132 Elongation factor P (EF-P) OB domain E3384_20585 PF09285 Elongation factor P, C-terminal E3384_20590 PF04055 Radical SAM superfamily E3384_20595 PF15922 YjeJ-like E3384_20600 PF13698 Domain of unknown function (DUF4156) E3384_20605 PF00118 TCP-1/cpn60 chaperonin family E3384_20610 PF00166 Chaperonin 10 Kd subunit E3384_20615 PF13520 Amino acid permease E3384_20620 PF04186 FxsA cytoplasmic membrane protein E3384_20625 PF10415 Fumarase C C-terminus E3384_20625 PF00206 Lyase E3384_20630 PF03605 Anaerobic c4-dicarboxylate membrane transporter E3384_20635 PF03091 CutA1 divalent ion tolerance protein E3384_20640 PF11412 Disulphide bond corrector protein DsbC E3384_20640 PF02683 Cytochrome C biogenesis protein transmembrane region E3384_20660 PF01569 PAP2 superfamily E3384_20665 PF06977 SdiA-regulated E3384_20690 PF02432 Fimbrial, major and minor subunit E3384_20705 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3384_20710 PF00577 Outer membrane usher protein E3384_20710 PF13954 PapC N-terminal domain E3384_20720 PF03333 Adhesin biosynthesis transcription regulatory protein E3384_20750 PF12833 Helix-turn-helix domain E3384_20755 PF00196 Bacterial regulatory proteins, luxR family E3384_20755 PF00072 Response regulator receiver domain E3384_20770 PF06977 SdiA-regulated E3384_20780 PF02613 Nitrate reductase delta subunit E3384_20785 PF04976 DMSO reductase anchor subunit (DmsC) E3384_20790 PF12800 4Fe-4S binding domain E3384_20790 PF13247 4Fe-4S dicluster domain E3384_20795 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3384_20795 PF01568 Molydopterin dinucleotide binding domain E3384_20795 PF00384 Molybdopterin oxidoreductase E3384_20800 PF00989 PAS fold E3384_20800 PF17203 Single cache domain 3 E3384_20800 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain E3384_20800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_20805 PF00072 Response regulator receiver domain E3384_20815 PF03605 Anaerobic c4-dicarboxylate membrane transporter E3384_20820 PF05681 Fumarate hydratase (Fumerase) E3384_20820 PF05683 Fumarase C-terminus E3384_20830 PF02056 Family 4 glycosyl hydrolase E3384_20830 PF11975 Family 4 glycosyl hydrolase C-terminal domain E3384_20835 PF12833 Helix-turn-helix domain E3384_20840 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain E3384_20840 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain E3384_20840 PF01276 Orn/Lys/Arg decarboxylase, major domain E3384_20845 PF12833 Helix-turn-helix domain E3384_20850 PF13520 Amino acid permease E3384_20855 PF00884 Sulfatase E3384_20855 PF08019 Phosphoethanolamine transferase EptA/EptB E3384_20860 PF00486 Transcriptional regulatory protein, C terminal E3384_20860 PF00072 Response regulator receiver domain E3384_20865 PF00512 His Kinase A (phospho-acceptor) domain E3384_20865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_20875 PF00083 Sugar (and other) transporter E3384_20875 PF08946 Osmosensory transporter coiled coil E3384_20880 PF08274 PhnA Zinc-Ribbon E3384_20880 PF03831 PhnA domain E3384_20885 PF06983 3-demethylubiquinone-9 3-methyltransferase E3384_20890 PF00583 Acetyltransferase (GNAT) family E3384_20905 PF08238 Sel1 repeat E3384_20910 PF00375 Sodium:dicarboxylate symporter family E3384_20920 PF03918 Cytochrome C biogenesis protein E3384_20925 PF01578 Cytochrome C assembly protein E3384_20925 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal E3384_20930 PF03916 Polysulphide reductase, NrfD E3384_20935 PF00037 4Fe-4S binding domain E3384_20935 PF13247 4Fe-4S dicluster domain E3384_20940 PF13435 Cytochrome c554 and c-prime E3384_20940 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) E3384_20945 PF02335 Cytochrome c552 E3384_20950 PF13193 AMP-binding enzyme C-terminal domain E3384_20950 PF00501 AMP-binding enzyme E3384_20950 PF16177 Acetyl-coenzyme A synthetase N-terminus E3384_20955 PF04341 Protein of unknown function, DUF485 E3384_20960 PF00474 Sodium:solute symporter family E3384_20965 PF04172 LrgB-like family E3384_20970 PF03788 LrgA family E3384_20975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_20975 PF03466 LysR substrate binding domain E3384_20980 PF00999 Sodium/hydrogen exchanger family E3384_20985 PF00860 Permease family E3384_20995 PF00376 MerR family regulatory protein E3384_20995 PF09278 MerR, DNA binding E3384_21000 PF12833 Helix-turn-helix domain E3384_21005 PF12792 CSS motif domain associated with EAL E3384_21005 PF00563 EAL domain E3384_21010 PF15940 Family of unknown function E3384_21015 PF00664 ABC transporter transmembrane region E3384_21015 PF00005 ABC transporter E3384_21045 PF00436 Single-strand binding protein family E3384_21050 PF17755 UvrA DNA-binding domain E3384_21050 PF00005 ABC transporter E3384_21050 PF17760 UvrA interaction domain E3384_21065 PF04237 YjbR E3384_21070 PF01894 Uncharacterised protein family UPF0047 E3384_21075 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) E3384_21080 PF00155 Aminotransferase class I and II E3384_21085 PF01168 Alanine racemase, N-terminal domain E3384_21085 PF00842 Alanine racemase, C-terminal domain E3384_21090 PF00772 DnaB-like helicase N terminal domain E3384_21090 PF03796 DnaB-like helicase C terminal domain E3384_21095 PF08240 Alcohol dehydrogenase GroES-like domain E3384_21095 PF00107 Zinc-binding dehydrogenase E3384_21100 PF09583 Phage shock protein G (Phageshock_PspG) E3384_21105 PF01207 Dihydrouridine synthase (Dus) E3384_21115 PF01475 Ferric uptake regulator family E3384_21120 PF05532 CsbD-like E3384_21130 PF01554 MatE E3384_21135 PF00717 Peptidase S24-like E3384_21135 PF01726 LexA DNA binding domain E3384_21140 PF01219 Prokaryotic diacylglycerol kinase E3384_21145 PF01553 Acyltransferase E3384_21150 PF01040 UbiA prenyltransferase family E3384_21155 PF04345 Chorismate lyase E3384_21160 PF07148 Maltose operon periplasmic protein precursor (MalM) E3384_21165 PF02264 LamB porin E3384_21170 PF17912 MalK OB fold domain E3384_21170 PF00005 ABC transporter E3384_21180 PF01547 Bacterial extracellular solute-binding protein E3384_21185 PF14785 Maltose transport system permease protein MalF P2 domain E3384_21185 PF00528 Binding-protein-dependent transport system inner membrane component E3384_21190 PF00528 Binding-protein-dependent transport system inner membrane component E3384_21195 PF06146 Phosphate-starvation-inducible E E3384_21200 PF06082 Exopolysaccharide biosynthesis protein YbjH E3384_21205 PF06251 Capsule biosynthesis GfcC E3384_21210 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF E3384_21220 PF00342 Phosphoglucose isomerase E3384_21225 PF00696 Amino acid kinase family E3384_21225 PF01842 ACT domain E3384_21230 PF08765 Mor transcription activator family E3384_21260 PF08220 DeoR-like helix-turn-helix domain E3384_21260 PF00455 DeoR C terminal sensor domain E3384_21265 PF11656 YjbD family (DUF3811) E3384_21270 PF00849 RNA pseudouridylate synthase E3384_21270 PF01479 S4 domain E3384_21275 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) E3384_21285 PF03575 Peptidase family S51 E3384_21290 PF02690 Na+/Pi-cotransporter E3384_21295 PF02965 Vitamin B12 dependent methionine synthase, activation domain E3384_21295 PF02574 Homocysteine S-methyltransferase E3384_21295 PF02310 B12 binding domain E3384_21295 PF02607 B12 binding domain E3384_21295 PF00809 Pterin binding enzyme E3384_21300 PF09339 IclR helix-turn-helix domain E3384_21300 PF01614 Bacterial transcriptional regulator E3384_21310 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) E3384_21315 PF00463 Isocitrate lyase family E3384_21320 PF01274 Malate synthase E3384_21325 PF04204 Homoserine O-succinyltransferase E3384_21330 PF13673 Acetyltransferase (GNAT) domain E3384_21355 PF01808 AICARFT/IMPCHase bienzyme E3384_21355 PF02142 MGS-like domain E3384_21360 PF02843 Phosphoribosylglycinamide synthetase, C domain E3384_21360 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain E3384_21360 PF02844 Phosphoribosylglycinamide synthetase, N domain E3384_21365 PF02954 Bacterial regulatory protein, Fis family E3384_21365 PF00072 Response regulator receiver domain E3384_21365 PF00158 Sigma-54 interaction domain E3384_21370 PF00512 His Kinase A (phospho-acceptor) domain E3384_21370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_21375 PF13801 Heavy-metal resistance E3384_21380 PF07356 Protein of unknown function (DUF1481) E3384_21385 PF00216 Bacterial DNA-binding protein E3384_21390 PF04222 Protein of unknown function (DUF416) E3384_21395 PF04493 Endonuclease V E3384_21400 PF01208 Uroporphyrinogen decarboxylase (URO-D) E3384_21405 PF09297 NADH pyrophosphatase zinc ribbon domain E3384_21405 PF00293 NUDIX domain E3384_21410 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ E3384_21415 PF13667 ThiC-associated domain E3384_21415 PF01964 Radical SAM ThiC family E3384_21420 PF02581 Thiamine monophosphate synthase E3384_21425 PF00899 ThiF family E3384_21430 PF02597 ThiS family E3384_21435 PF05690 Thiazole biosynthesis protein ThiG E3384_21440 PF04055 Radical SAM superfamily E3384_21440 PF06968 Biotin and Thiamin Synthesis associated domain E3384_21465 PF05000 RNA polymerase Rpb1, domain 4 E3384_21465 PF04997 RNA polymerase Rpb1, domain 1 E3384_21465 PF04983 RNA polymerase Rpb1, domain 3 E3384_21465 PF04998 RNA polymerase Rpb1, domain 5 E3384_21465 PF00623 RNA polymerase Rpb1, domain 2 E3384_21470 PF04561 RNA polymerase Rpb2, domain 2 E3384_21470 PF04565 RNA polymerase Rpb2, domain 3 E3384_21470 PF10385 RNA polymerase beta subunit external 1 domain E3384_21470 PF04560 RNA polymerase Rpb2, domain 7 E3384_21470 PF04563 RNA polymerase beta subunit E3384_21470 PF00562 RNA polymerase Rpb2, domain 6 E3384_21475 PF16320 Ribosomal protein L7/L12 dimerisation domain E3384_21475 PF00542 Ribosomal protein L7/L12 C-terminal domain E3384_21480 PF00466 Ribosomal protein L10 E3384_21485 PF00687 Ribosomal protein L1p/L10e family E3384_21490 PF00298 Ribosomal protein L11, RNA binding domain E3384_21490 PF03946 Ribosomal protein L11, N-terminal domain E3384_21495 PF02357 Transcription termination factor nusG E3384_21495 PF00467 KOW motif E3384_21500 PF00584 SecE/Sec61-gamma subunits of protein translocation complex E3384_21505 PF00009 Elongation factor Tu GTP binding domain E3384_21505 PF03144 Elongation factor Tu domain 2 E3384_21505 PF03143 Elongation factor Tu C-terminal domain E3384_21535 PF00485 Phosphoribulokinase / Uridine kinase family E3384_21540 PF02237 Biotin protein ligase C terminal domain E3384_21540 PF03099 Biotin/lipoate A/B protein ligase family E3384_21540 PF08279 HTH domain E3384_21545 PF01565 FAD binding domain E3384_21545 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain E3384_21575 PF01177 Asp/Glu/Hydantoin racemase E3384_21580 PF07715 TonB-dependent Receptor Plug Domain E3384_21580 PF00593 TonB dependent receptor E3384_21585 PF05958 tRNA (Uracil-5-)-methyltransferase E3384_21590 PF07226 Protein of unknown function (DUF1422) E3384_21595 PF00440 Bacterial regulatory proteins, tetR family E3384_21600 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3384_21600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3384_21605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_21605 PF03466 LysR substrate binding domain E3384_21615 PF00206 Lyase E3384_21615 PF14698 Argininosuccinate lyase C-terminal E3384_21620 PF00696 Amino acid kinase family E3384_21625 PF01118 Semialdehyde dehydrogenase, NAD binding domain E3384_21625 PF02774 Semialdehyde dehydrogenase, dimerisation domain E3384_21630 PF01546 Peptidase family M20/M25/M40 E3384_21630 PF07687 Peptidase dimerisation domain E3384_21635 PF00311 Phosphoenolpyruvate carboxylase E3384_21640 PF00884 Sulfatase E3384_21645 PF12833 Helix-turn-helix domain E3384_21650 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3384_21655 PF04055 Radical SAM superfamily E3384_21665 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3384_21675 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3384_21675 PF00391 PEP-utilising enzyme, mobile domain E3384_21675 PF02896 PEP-utilising enzyme, TIM barrel domain E3384_21675 PF00381 PTS HPr component phosphorylation site E3384_21675 PF05524 PEP-utilising enzyme, N-terminal E3384_21680 PF00923 Transaldolase/Fructose-6-phosphate aldolase E3384_21685 PF00465 Iron-containing alcohol dehydrogenase E3384_21690 PF06940 Domain of unknown function (DUF1287) E3384_21695 PF00141 Peroxidase E3384_21700 PF02219 Methylenetetrahydrofolate reductase E3384_21705 PF02872 5'-nucleotidase, C-terminal domain E3384_21705 PF00149 Calcineurin-like phosphoesterase E3384_21705 PF17936 Bacterial Ig domain E3384_21720 PF05552 Conserved TM helix E3384_21720 PF00924 Mechanosensitive ion channel E3384_21725 PF00742 Homoserine dehydrogenase E3384_21725 PF03447 Homoserine dehydrogenase, NAD binding domain E3384_21725 PF00696 Amino acid kinase family E3384_21730 PF01053 Cys/Met metabolism PLP-dependent enzyme E3384_21735 PF01340 Met Apo-repressor, MetJ E3384_21740 PF05935 Arylsulfotransferase (ASST) E3384_21740 PF17425 Arylsulfotransferase Ig-like domain E3384_21750 PF01197 Ribosomal protein L31 E3384_21755 PF18074 Primosomal protein N C-terminal domain E3384_21755 PF17764 3′ DNA-binding domain (3′BD) E3384_21755 PF00271 Helicase conserved C-terminal domain E3384_21755 PF00270 DEAD/DEAH box helicase E3384_21755 PF18319 PriA DNA helicase Cys-rich region (CRR) domain E3384_21760 PF00356 Bacterial regulatory proteins, lacI family E3384_21765 PF05036 Sporulation related domain E3384_21770 PF00227 Proteasome subunit E3384_21775 PF10431 C-terminal, D2-small domain, of ClpB protein E3384_21775 PF00004 ATPase family associated with various cellular activities (AAA) E3384_21775 PF07724 AAA domain (Cdc48 subfamily) E3384_21780 PF01040 UbiA prenyltransferase family E3384_21785 PF03737 Aldolase/RraA E3384_21790 PF06005 Cell division protein ZapB E3384_21795 PF00230 Major intrinsic protein E3384_21800 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E3384_21800 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E3384_21805 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded E3384_21810 PF00175 Oxidoreductase NAD-binding domain E3384_21810 PF00970 Oxidoreductase FAD-binding domain E3384_21815 PF05656 Protein of unknown function (DUF805) E3384_21820 PF07305 Protein of unknown function (DUF1454) E3384_21825 PF00121 Triosephosphate isomerase E3384_21830 PF00834 Ribulose-phosphate 3 epimerase family E3384_21835 PF03992 Antibiotic biosynthesis monooxygenase E3384_21840 PF01791 DeoC/LacD family aldolase E3384_21845 PF13407 Periplasmic binding protein domain E3384_21850 PF02653 Branched-chain amino acid transport system / permease component E3384_21855 PF02653 Branched-chain amino acid transport system / permease component E3384_21860 PF00005 ABC transporter E3384_21865 PF04198 Putative sugar-binding domain E3384_21870 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E3384_21870 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E3384_21880 PF02611 CDP-diacylglycerol pyrophosphatase E3384_21890 PF00392 Bacterial regulatory proteins, gntR family E3384_21890 PF00155 Aminotransferase class I and II E3384_21900 PF00294 pfkB family carbohydrate kinase E3384_21910 PF02611 CDP-diacylglycerol pyrophosphatase E3384_21920 PF00365 Phosphofructokinase E3384_21925 PF16916 Dimerisation domain of Zinc Transporter E3384_21925 PF01545 Cation efflux family E3384_21930 PF07813 LTXXQ motif family protein E3384_21935 PF00072 Response regulator receiver domain E3384_21935 PF00486 Transcriptional regulatory protein, C terminal E3384_21940 PF00512 His Kinase A (phospho-acceptor) domain E3384_21940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_21940 PF00672 HAMP domain E3384_21940 PF16527 Two-component sensor protein CpxA, periplasmic domain E3384_21950 PF03475 3-alpha domain E3384_21950 PF03473 MOSC domain E3384_21955 PF02777 Iron/manganese superoxide dismutases, C-terminal domain E3384_21955 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain E3384_21960 PF03480 Bacterial extracellular solute-binding protein, family 7 E3384_21965 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component E3384_21970 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component E3384_21975 PF06178 Oligogalacturonate-specific porin protein (KdgM) E3384_21980 PF06379 L-rhamnose-proton symport protein (RhaT) E3384_21985 PF02311 AraC-like ligand binding domain E3384_21985 PF12833 Helix-turn-helix domain E3384_21990 PF02311 AraC-like ligand binding domain E3384_21990 PF12833 Helix-turn-helix domain E3384_21995 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E3384_21995 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E3384_22000 PF06134 L-rhamnose isomerase (RhaA) E3384_22005 PF00596 Class II Aldolase and Adducin N-terminal domain E3384_22010 PF00465 Iron-containing alcohol dehydrogenase E3384_22015 PF05336 L-rhamnose mutarotase E3384_22025 PF03591 AzlC protein E3384_22035 PF12889 Protein of unknown function (DUF3829) E3384_22040 PF12889 Protein of unknown function (DUF3829) E3384_22045 PF02634 FdhD/NarQ family E3384_22055 PF09163 Formate dehydrogenase N, transmembrane E3384_22055 PF13247 4Fe-4S dicluster domain E3384_22060 PF01292 Prokaryotic cytochrome b561 E3384_22065 PF04216 Protein involved in formate dehydrogenase formation E3384_22075 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system E3384_22080 PF07859 alpha/beta hydrolase fold E3384_22085 PF00583 Acetyltransferase (GNAT) family E3384_22085 PF09500 Putative thioesterase (yiiD_Cterm) E3384_22090 PF02580 D-Tyr-tRNA(Tyr) deacylase E3384_22095 PF03631 Virulence factor BrkB E3384_22100 PF13419 Haloacid dehalogenase-like hydrolase E3384_22105 PF08220 DeoR-like helix-turn-helix domain E3384_22105 PF00455 DeoR C terminal sensor domain E3384_22110 PF00294 pfkB family carbohydrate kinase E3384_22115 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E3384_22115 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E3384_22120 PF01791 DeoC/LacD family aldolase E3384_22130 PF01263 Aldose 1-epimerase E3384_22135 PF01055 Glycosyl hydrolases family 31 E3384_22150 PF06178 Oligogalacturonate-specific porin protein (KdgM) E3384_22170 PF04055 Radical SAM superfamily E3384_22190 PF03951 Glutamine synthetase, beta-Grasp domain E3384_22190 PF00120 Glutamine synthetase, catalytic domain E3384_22195 PF00512 His Kinase A (phospho-acceptor) domain E3384_22195 PF00989 PAS fold E3384_22195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3384_22200 PF02954 Bacterial regulatory protein, Fis family E3384_22200 PF00072 Response regulator receiver domain E3384_22200 PF00158 Sigma-54 interaction domain E3384_22210 PF04055 Radical SAM superfamily E3384_22210 PF06969 HemN C-terminal domain E3384_22215 PF04220 Der GTPase activator (YihI) E3384_22225 PF01926 50S ribosome-binding GTPase E3384_22230 PF01367 5'-3' exonuclease, C-terminal SAM fold E3384_22230 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain E3384_22230 PF00476 DNA polymerase family A E3384_22230 PF01612 3'-5' exonuclease E3384_22235 PF01553 Acyltransferase E3384_22240 PF01323 DSBA-like thioredoxin domain E3384_22245 PF01636 Phosphotransferase enzyme family E3384_22250 PF06288 Protein of unknown function (DUF1040) E3384_22255 PF12804 MobA-like NTP transferase domain E3384_22260 PF03205 Molybdopterin guanine dinucleotide synthesis protein B E3384_22290 PF12724 Flavodoxin domain E3384_22295 PF02386 Cation transport protein E3384_22300 PF01205 Uncharacterized protein family UPF0029 E3384_22300 PF09186 Domain of unknown function (DUF1949) E3384_22305 PF00557 Metallopeptidase family M24 E3384_22310 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E3384_22310 PF00378 Enoyl-CoA hydratase/isomerase E3384_22310 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E3384_22315 PF00108 Thiolase, N-terminal domain E3384_22315 PF02803 Thiolase, C-terminal domain E3384_22320 PF17425 Arylsulfotransferase Ig-like domain E3384_22320 PF05935 Arylsulfotransferase (ASST) E3384_22325 PF00970 Oxidoreductase FAD-binding domain E3384_22325 PF00175 Oxidoreductase NAD-binding domain E3384_22330 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase E3384_22335 PF02357 Transcription termination factor nusG E3384_22340 PF01026 TatD related DNase E3384_22345 PF00902 Sec-independent protein translocase protein (TatC) E3384_22355 PF02416 mttA/Hcf106 family E3384_22360 PF03109 ABC1 family E3384_22365 PF02036 SCP-2 sterol transfer family E3384_22370 PF01209 ubiE/COQ5 methyltransferase family E3384_22375 PF02646 RmuC family E3384_22380 PF01048 Phosphorylase superfamily E3384_22385 PF01738 Dienelactone hydrolase family E3384_22390 PF13186 Iron-sulfur cluster-binding domain E3384_22390 PF04055 Radical SAM superfamily E3384_22400 PF08267 Cobalamin-independent synthase, N-terminal domain E3384_22400 PF01717 Cobalamin-independent synthase, Catalytic domain E3384_22405 PF03466 LysR substrate binding domain E3384_22405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_22410 PF00892 EamA-like transporter family E3384_22420 PF12146 Serine aminopeptidase, S33 E3384_22425 PF01810 LysE type translocator E3384_22430 PF01810 LysE type translocator E3384_22435 PF00570 HRDC domain E3384_22435 PF16124 RecQ zinc-binding E3384_22435 PF00271 Helicase conserved C-terminal domain E3384_22435 PF09382 RQC domain E3384_22435 PF00270 DEAD/DEAH box helicase E3384_22440 PF02253 Phospholipase A1 E3384_22445 PF03061 Thioesterase superfamily E3384_22450 PF00892 EamA-like transporter family E3384_22460 PF10947 Protein of unknown function (DUF2628) E3384_22465 PF01544 CorA-like Mg2+ transporter protein E3384_22470 PF13361 UvrD-like helicase C-terminal domain E3384_22470 PF00580 UvrD/REP helicase N-terminal domain E3384_22475 PF13419 Haloacid dehalogenase-like hydrolase E3384_22480 PF02899 Phage integrase, N-terminal SAM-like domain E3384_22480 PF00589 Phage integrase family E3384_22485 PF04340 Protein of unknown function, DUF484 E3384_22490 PF01678 Diaminopimelate epimerase E3384_22495 PF13627 Prokaryotic lipoprotein-attachment site E3384_22510 PF01491 Frataxin-like domain E3384_22530 PF12633 Adenylate cyclase NT domain E3384_22530 PF01295 Adenylate cyclase, class-I E3384_22535 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain E3384_22535 PF03900 Porphobilinogen deaminase, C-terminal domain E3384_22540 PF02602 Uroporphyrinogen-III synthase HemD E3384_22545 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase E3384_22550 PF07719 Tetratricopeptide repeat E3384_22550 PF07219 HemY protein N-terminus E3384_22575 PF00324 Amino acid permease E3384_22580 PF03808 Glycosyl transferase WecB/TagA/CpsF family E3384_22585 PF06899 WzyE protein, O-antigen assembly polymerase E3384_22590 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 E3384_22595 PF01943 Polysaccharide biosynthesis protein E3384_22600 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E3384_22610 PF00483 Nucleotidyl transferase E3384_22615 PF16363 GDP-mannose 4,6 dehydratase E3384_22620 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain E3384_22620 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain E3384_22620 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain E3384_22625 PF02350 UDP-N-acetylglucosamine 2-epimerase E3384_22630 PF02706 Chain length determinant protein E3384_22635 PF00953 Glycosyl transferase family 4 E3384_22645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3384_22645 PF07498 Rho termination factor, N-terminal domain E3384_22645 PF07497 Rho termination factor, RNA-binding domain E3384_22655 PF00085 Thioredoxin E3384_22660 PF00271 Helicase conserved C-terminal domain E3384_22660 PF00270 DEAD/DEAH box helicase E3384_22665 PF02541 Ppx/GppA phosphatase family E3384_22670 PF00580 UvrD/REP helicase N-terminal domain E3384_22670 PF13361 UvrD-like helicase C-terminal domain E3384_22675 PF04973 Nicotinamide mononucleotide transporter E3384_22690 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain E3384_22690 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain E3384_22695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_22695 PF03466 LysR substrate binding domain E3384_22710 PF00291 Pyridoxal-phosphate dependent enzyme E3384_22710 PF00585 C-terminal regulatory domain of Threonine dehydratase E3384_22715 PF00920 Dehydratase family E3384_22720 PF01063 Amino-transferase class IV E3384_22730 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3384_22730 PF00205 Thiamine pyrophosphate enzyme, central domain E3384_22730 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3384_22735 PF08046 IlvGEDA operon leader peptide E3384_22740 PF13335 Magnesium chelatase, subunit ChlI C-terminal E3384_22740 PF01078 Magnesium chelatase, subunit ChlI E3384_22745 PF04219 Protein of unknown function, DUF E3384_22750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_22750 PF03466 LysR substrate binding domain E3384_22785 PF07729 FCD domain E3384_22785 PF00392 Bacterial regulatory proteins, gntR family E3384_22790 PF07690 Major Facilitator Superfamily E3384_22795 PF00356 Bacterial regulatory proteins, lacI family E3384_22800 PF00294 pfkB family carbohydrate kinase E3384_22805 PF13407 Periplasmic binding protein domain E3384_22810 PF02653 Branched-chain amino acid transport system / permease component E3384_22815 PF00005 ABC transporter E3384_22820 PF05025 RbsD / FucU transport protein family E3384_22825 PF02705 K+ potassium transporter E3384_22830 PF17868 AAA lid domain E3384_22830 PF12592 Protein of unknown function (DUF3763) E3384_22830 PF07728 AAA domain (dynein-related subfamily) E3384_22835 PF05762 VWA domain containing CoxE-like protein E3384_22840 PF03590 Aspartate-ammonia ligase E3384_22845 PF01037 Lrp/AsnC ligand binding domain E3384_22850 PF00258 Flavodoxin E3384_22855 PF01134 Glucose inhibited division protein A E3384_22855 PF13932 GidA associated domain E3384_22860 PF02527 rRNA small subunit methyltransferase G E3384_22865 PF03899 ATP synthase I chain E3384_22870 PF00119 ATP synthase A chain E3384_22875 PF00137 ATP synthase subunit C E3384_22880 PF00430 ATP synthase B/B' CF(0) E3384_22885 PF00213 ATP synthase delta (OSCP) subunit E3384_22890 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3384_22890 PF00306 ATP synthase alpha/beta chain, C terminal domain E3384_22890 PF02874 ATP synthase alpha/beta family, beta-barrel domain E3384_22895 PF00231 ATP synthase E3384_22900 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3384_22900 PF02874 ATP synthase alpha/beta family, beta-barrel domain E3384_22905 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain E3384_22905 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain E3384_22915 PF12804 MobA-like NTP transferase domain E3384_22915 PF00132 Bacterial transferase hexapeptide (six repeats) E3384_22920 PF01380 SIS domain E3384_22925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3384_22925 PF12793 Sugar transport-related sRNA regulator N-term E3384_22930 PF08501 Shikimate dehydrogenase substrate binding domain E3384_22935 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3384_22935 PF02378 Phosphotransferase system, EIIC E3384_22940 PF12849 PBP superfamily domain E3384_22945 PF00528 Binding-protein-dependent transport system inner membrane component E3384_22950 PF00528 Binding-protein-dependent transport system inner membrane component E3384_22955 PF00005 ABC transporter E3384_22960 PF01895 PhoU domain E3384_22965 PF13419 Haloacid dehalogenase-like hydrolase E3384_22970 PF00860 Permease family E3384_22975 PF03358 NADPH-dependent FMN reductase E3384_22985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3384_22985 PF03466 LysR substrate binding domain E3384_22990 PF07690 Major Facilitator Superfamily E3384_22995 PF10396 GTP-binding protein TrmE N-terminus E3384_22995 PF12631 MnmE helical domain E3384_22995 PF01926 50S ribosome-binding GTPase E3384_23000 PF14849 YidC periplasmic domain E3384_23000 PF02096 60Kd inner membrane protein E3384_23005 PF01809 Putative membrane protein insertion efficiency factor E3384_23010 PF00825 Ribonuclease P E3384_23015 PF00468 Ribosomal protein L34 E3384_23020 PF06986 Type-1V conjugative transfer system mating pair stabilisation E3384_23030 PF13728 F plasmid transfer operon protein E3384_23035 PF06122 Conjugative relaxosome accessory transposon protein E3384_23040 PF07916 TraG-like protein, N-terminal region E3384_23050 PF05818 Enterobacterial TraT complement resistance protein E3384_23055 PF12615 F sex factor protein N terminal E3384_23055 PF10412 Type IV secretion-system coupling protein DNA-binding domain E3384_23060 PF18340 DNA relaxase TraI 2B/2B-like domain E3384_23060 PF07057 DNA helicase TraI E3384_23060 PF08751 TrwC relaxase E3384_23060 PF18272 single-stranded DNA binding TraI N-terminal subdomain E3384_23070 PF05857 TraX protein E3384_23080 PF10723 Replication regulatory protein RepB E3384_23090 PF02387 IncFII RepA protein family E3384_23120 PF12833 Helix-turn-helix domain E3384_23170 PF13953 PapC C-terminal domain E3384_23170 PF13954 PapC N-terminal domain E3384_23170 PF00577 Outer membrane usher protein E3384_23175 PF02753 Pili assembly chaperone PapD, C-terminal domain E3384_23175 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3384_23180 PF00872 Transposase, Mutator family E3384_23190 PF01476 LysM domain E3384_23190 PF02368 Bacterial Ig-like domain (group 2) E3384_23190 PF07979 Intimin C-type lectin domain E3384_23190 PF11924 Inverse autotransporter, beta-domain E3384_23190 PF02369 Bacterial Ig-like domain (group 1) E3384_23200 PF03472 Autoinducer binding domain E3384_23200 PF00196 Bacterial regulatory proteins, luxR family E3384_23210 PF07362 Post-segregation antitoxin CcdA E3384_23215 PF01845 CcdB protein E3384_23220 PF00589 Phage integrase family E3384_23225 PF04754 Putative transposase, YhgA-like E3384_23235 PF13614 AAA domain E3384_23235 PF18607 ParA helix turn helix domain E3384_23240 PF08775 ParB family E3384_23240 PF02195 ParB-like nuclease domain E3384_23245 PF00817 impB/mucB/samB family E3384_23245 PF13438 Domain of unknown function (DUF4113) E3384_23245 PF11799 impB/mucB/samB family C-terminal domain E3384_23255 PF02586 SOS response associated peptidase (SRAP) E3384_23260 PF01555 DNA methylase E3384_23270 PF07128 Protein of unknown function (DUF1380) E3384_23305 PF00436 Single-strand binding protein family E3384_23310 PF06006 Bacterial protein of unknown function (DUF905) E3384_23315 PF02195 ParB-like nuclease domain E3384_23320 PF06290 Plasmid SOS inhibition protein (PsiB) E3384_23325 PF06952 PsiA protein E3384_23360 PF03230 Antirestriction protein E3384_23365 PF01464 Transglycosylase SLT domain E3384_23370 PF05261 TraM protein, DNA-binding E3384_23380 PF05509 TraY domain E3384_23385 PF05513 TraA E3384_23390 PF07178 TraL protein E3384_23395 PF05309 TraE protein E3384_23405 PF03743 Bacterial conjugation TrbI-like protein E3384_23420 PF09676 Type IV conjugative transfer system lipoprotein (TraV) E3384_23425 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer E3384_23430 PF09677 Type-F conjugative transfer system protein (TrbI_Ftype) E3384_23435 PF12477 Sex factor F TraW protein N terminal E3384_23440 PF06834 TraU protein E3384_23450 PF09673 Type-F conjugative transfer system pilin assembly protein