locus-tag class description CS348_00005 PF00308 Bacterial dnaA protein CS348_00005 PF08299 Bacterial dnaA protein helix-turn-helix CS348_00005 PF11638 DnaA N-terminal domain CS348_00010 PF02767 DNA polymerase III beta subunit, central domain CS348_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CS348_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CS348_00015 PF02463 RecF/RecN/SMC N terminal domain CS348_00020 PF18053 DNA gyrase B subunit insert domain CS348_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_00020 PF01751 Toprim domain CS348_00020 PF00986 DNA gyrase B subunit, carboxyl terminus CS348_00020 PF00204 DNA gyrase B CS348_00055 PF01627 Hpt domain CS348_00055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_00055 PF00672 HAMP domain CS348_00055 PF00072 Response regulator receiver domain CS348_00055 PF00512 His Kinase A (phospho-acceptor) domain CS348_00060 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CS348_00065 PF00072 Response regulator receiver domain CS348_00065 PF00486 Transcriptional regulatory protein, C terminal CS348_00070 PF03264 NapC/NirT cytochrome c family, N-terminal region CS348_00075 PF01568 Molydopterin dinucleotide binding domain CS348_00075 PF18364 Molybdopterin oxidoreductase N-terminal domain CS348_00075 PF00384 Molybdopterin oxidoreductase CS348_00080 PF02613 Nitrate reductase delta subunit CS348_00085 PF14376 Haem-binding domain CS348_00085 PF03150 Di-haem cytochrome c peroxidase CS348_00085 PF00034 Cytochrome c CS348_00090 PF00005 ABC transporter CS348_00095 PF03379 CcmB protein CS348_00100 PF01578 Cytochrome C assembly protein CS348_00105 PF04995 Heme exporter protein D (CcmD) CS348_00110 PF03100 CcmE CS348_00115 PF01578 Cytochrome C assembly protein CS348_00115 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CS348_00120 PF08534 Redoxin CS348_00125 PF03918 Cytochrome C biogenesis protein CS348_00130 PF07676 WD40-like Beta Propeller Repeat CS348_00130 PF12566 Protein of unknown function (DUF3748) CS348_00135 PF07119 Protein of unknown function (DUF1375) CS348_00140 PF00011 Hsp20/alpha crystallin family CS348_00145 PF00011 Hsp20/alpha crystallin family CS348_00150 PF02080 TrkA-C domain CS348_00150 PF06826 Predicted Permease Membrane Region CS348_00155 PF02656 Domain of unknown function (DUF202) CS348_00160 PF02656 Domain of unknown function (DUF202) CS348_00170 PF00291 Pyridoxal-phosphate dependent enzyme CS348_00175 PF02447 GntP family permease CS348_00180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_00180 PF03466 LysR substrate binding domain CS348_00190 PF07690 Major Facilitator Superfamily CS348_00200 PF13939 Toxin TisB, type I toxin-antitoxin system CS348_00210 PF08049 IlvB leader peptide CS348_00215 PF00205 Thiamine pyrophosphate enzyme, central domain CS348_00215 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CS348_00215 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CS348_00220 PF01842 ACT domain CS348_00225 PF00455 DeoR C terminal sensor domain CS348_00225 PF08220 DeoR-like helix-turn-helix domain CS348_00230 PF00294 pfkB family carbohydrate kinase CS348_00235 PF07690 Major Facilitator Superfamily CS348_00245 PF00196 Bacterial regulatory proteins, luxR family CS348_00245 PF00072 Response regulator receiver domain CS348_00250 PF07730 Histidine kinase CS348_00250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_00250 PF05231 MASE1 CS348_00255 PF07690 Major Facilitator Superfamily CS348_00260 PF07690 Major Facilitator Superfamily CS348_00265 PF06711 Protein of unknown function (DUF1198) CS348_00275 PF00874 PRD domain CS348_00275 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CS348_00275 PF05043 Mga helix-turn-helix domain CS348_00275 PF08279 HTH domain CS348_00280 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CS348_00285 PF03611 PTS system sugar-specific permease component CS348_00295 PF01116 Fructose-bisphosphate aldolase class-II CS348_00320 PF07690 Major Facilitator Superfamily CS348_00325 PF00232 Glycosyl hydrolase family 1 CS348_00335 PF00874 PRD domain CS348_00335 PF00158 Sigma-54 interaction domain CS348_00345 PF03830 PTS system sorbose subfamily IIB component CS348_00345 PF03610 PTS system fructose IIA component CS348_00350 PF03609 PTS system sorbose-specific iic component CS348_00355 PF03613 PTS system mannose/fructose/sorbose family IID component CS348_00360 PF03841 L-seryl-tRNA selenium transferase CS348_00365 PF07071 KDGP aldolase CS348_00370 PF04754 Putative transposase, YhgA-like CS348_00375 PF00892 EamA-like transporter family CS348_00380 PF02308 MgtC family CS348_00385 PF00689 Cation transporting ATPase, C-terminus CS348_00385 PF00690 Cation transporter/ATPase, N-terminus CS348_00405 PF00857 Isochorismatase family CS348_00415 PF00486 Transcriptional regulatory protein, C terminal CS348_00425 PF03797 Autotransporter beta-domain CS348_00430 PF00196 Bacterial regulatory proteins, luxR family CS348_00470 PF01055 Glycosyl hydrolases family 31 CS348_00470 PF13802 Galactose mutarotase-like CS348_00475 PF05170 AsmA family CS348_00480 PF00860 Permease family CS348_00485 PF03616 Sodium/glutamate symporter CS348_00490 PF00270 DEAD/DEAH box helicase CS348_00490 PF17191 RecG wedge domain CS348_00490 PF00271 Helicase conserved C-terminal domain CS348_00495 PF00588 SpoU rRNA Methylase family CS348_00495 PF12105 SpoU, rRNA methylase, C-terminal CS348_00500 PF13291 ACT domain CS348_00500 PF02824 TGS domain CS348_00500 PF04607 Region found in RelA / SpoT proteins CS348_00505 PF01192 RNA polymerase Rpb6 CS348_00510 PF00625 Guanylate kinase CS348_00515 PF01653 NAD-dependent DNA ligase adenylation domain CS348_00515 PF03120 NAD-dependent DNA ligase OB-fold domain CS348_00520 PF03458 UPF0126 domain CS348_00530 PF03466 LysR substrate binding domain CS348_00530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_00535 PF03755 YicC-like family, N-terminal region CS348_00535 PF08340 Domain of unknown function (DUF1732) CS348_00545 PF01138 3' exoribonuclease family, domain 1 CS348_00545 PF03725 3' exoribonuclease family, domain 2 CS348_00550 PF00156 Phosphoribosyl transferase domain CS348_00555 PF00440 Bacterial regulatory proteins, tetR family CS348_00560 PF00692 dUTPase CS348_00565 PF02441 Flavoprotein CS348_00565 PF04127 DNA / pantothenate metabolism flavoprotein CS348_00570 PF04002 RadC-like JAB domain CS348_00575 PF00830 Ribosomal L28 family CS348_00580 PF00471 Ribosomal protein L33 CS348_00585 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CS348_00585 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CS348_00585 PF06827 Zinc finger found in FPG and IleRS CS348_00590 PF01467 Cytidylyltransferase-like CS348_00595 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CS348_00600 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CS348_00605 PF00534 Glycosyl transferases group 1 CS348_00605 PF13439 Glycosyltransferase Family 4 CS348_00615 PF07922 Glycosyltransferase family 52 CS348_00620 PF13439 Glycosyltransferase Family 4 CS348_00620 PF00534 Glycosyl transferases group 1 CS348_00625 PF01501 Glycosyl transferase family 8 CS348_00625 PF08437 Glycosyl transferase family 8 C-terminal CS348_00630 PF01501 Glycosyl transferase family 8 CS348_00630 PF08437 Glycosyl transferase family 8 C-terminal CS348_00635 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) CS348_00645 PF00534 Glycosyl transferases group 1 CS348_00650 PF04932 O-Antigen ligase CS348_00655 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CS348_00660 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CS348_00665 PF01370 NAD dependent epimerase/dehydratase family CS348_00670 PF00155 Aminotransferase class I and II CS348_00675 PF08240 Alcohol dehydrogenase GroES-like domain CS348_00675 PF00107 Zinc-binding dehydrogenase CS348_00680 PF00535 Glycosyl transferase family 2 CS348_00685 PF04748 Divergent polysaccharide deacetylase CS348_00690 PF01551 Peptidase family M23 CS348_00695 PF01676 Metalloenzyme superfamily CS348_00695 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CS348_00700 PF00581 Rhodanese-like domain CS348_00705 PF00462 Glutaredoxin CS348_00710 PF02556 Preprotein translocase subunit SecB CS348_00715 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CS348_00715 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CS348_00720 PF06426 Serine acetyltransferase, N-terminal CS348_00720 PF00132 Bacterial transferase hexapeptide (six repeats) CS348_00725 PF00588 SpoU rRNA Methylase family CS348_00730 PF01070 FMN-dependent dehydrogenase CS348_00735 PF00392 Bacterial regulatory proteins, gntR family CS348_00735 PF07729 FCD domain CS348_00740 PF02652 L-lactate permease CS348_00745 PF03895 YadA-like membrane anchor domain CS348_00745 PF05658 Head domain of trimeric autotransporter adhesin CS348_00745 PF13018 Extended Signal Peptide of Type V secretion system CS348_00745 PF05662 Coiled stalk of trimeric autotransporter adhesin CS348_00750 PF11622 Protein of unknown function (DUF3251) CS348_00760 PF10928 Protein of unknown function (DUF2810) CS348_00770 PF05068 Mannitol repressor CS348_00775 PF08125 Mannitol dehydrogenase C-terminal domain CS348_00775 PF01232 Mannitol dehydrogenase Rossmann domain CS348_00780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CS348_00780 PF02378 Phosphotransferase system, EIIC CS348_00780 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CS348_00785 PF00043 Glutathione S-transferase, C-terminal domain CS348_00785 PF13417 Glutathione S-transferase, N-terminal domain CS348_00790 PF12390 Selenocysteine synthase N terminal CS348_00790 PF03841 L-seryl-tRNA selenium transferase CS348_00795 PF09107 Elongation factor SelB, winged helix CS348_00795 PF09106 Elongation factor SelB, winged helix CS348_00795 PF03144 Elongation factor Tu domain 2 CS348_00795 PF00009 Elongation factor Tu GTP binding domain CS348_00800 PF00465 Iron-containing alcohol dehydrogenase CS348_00805 PF00480 ROK family CS348_00810 PF00171 Aldehyde dehydrogenase family CS348_00815 PF07944 Beta-L-arabinofuranosidase, GH127 CS348_00825 PF00596 Class II Aldolase and Adducin N-terminal domain CS348_00830 PF01261 Xylose isomerase-like TIM barrel CS348_00835 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CS348_00840 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CS348_00840 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CS348_00845 PF03480 Bacterial extracellular solute-binding protein, family 7 CS348_00850 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CS348_00855 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CS348_00860 PF16154 Domain of unknown function (DUF4862) CS348_00865 PF04074 YhcH/YjgK/YiaL CS348_00870 PF02615 Malate/L-lactate dehydrogenase CS348_00875 PF01614 Bacterial transcriptional regulator CS348_00875 PF09339 IclR helix-turn-helix domain CS348_00880 PF13247 4Fe-4S dicluster domain CS348_00885 PF00155 Aminotransferase class I and II CS348_00890 PF00128 Alpha amylase, catalytic domain CS348_00895 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CS348_00900 PF12833 Helix-turn-helix domain CS348_00915 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CS348_00915 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CS348_00920 PF05360 yiaA/B two helix domain CS348_00925 PF01757 Acyltransferase family CS348_00935 PF13983 YsaB-like lipoprotein CS348_00940 PF02091 Glycyl-tRNA synthetase alpha subunit CS348_00945 PF05746 DALR anticodon binding domain CS348_00945 PF02092 Glycyl-tRNA synthetase beta subunit CS348_00950 PF13276 HTH-like domain CS348_00950 PF00665 Integrase core domain CS348_00950 PF13333 Integrase core domain CS348_00990 PF00313 'Cold-shock' DNA-binding domain CS348_00995 PF01381 Helix-turn-helix CS348_01000 PF11254 Protein of unknown function (DUF3053) CS348_01005 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CS348_01005 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CS348_01010 PF13488 Glycine zipper CS348_01010 PF00691 OmpA family CS348_01015 PF00384 Molybdopterin oxidoreductase CS348_01015 PF01568 Molydopterin dinucleotide binding domain CS348_01015 PF18364 Molybdopterin oxidoreductase N-terminal domain CS348_01020 PF00583 Acetyltransferase (GNAT) family CS348_01025 PF03352 Methyladenine glycosylase CS348_01030 PF03797 Autotransporter beta-domain CS348_01035 PF08019 Phosphoethanolamine transferase EptA/EptB CS348_01035 PF00884 Sulfatase CS348_01065 PF00860 Permease family CS348_01070 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CS348_01075 PF00528 Binding-protein-dependent transport system inner membrane component CS348_01080 PF00528 Binding-protein-dependent transport system inner membrane component CS348_01080 PF12911 N-terminal TM domain of oligopeptide transport permease C CS348_01085 PF00005 ABC transporter CS348_01085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CS348_01090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CS348_01090 PF00005 ABC transporter CS348_01095 PF03222 Tryptophan/tyrosine permease family CS348_01105 PF13940 Toxin Ldr, type I toxin-antitoxin system CS348_01110 PF11658 Cellulose biosynthesis protein BcsG CS348_01115 PF11120 Cellulose biosynthesis protein BcsF CS348_01120 PF10995 Cellulose biosynthesis GIL CS348_01125 PF10945 Cellulose biosynthesis protein BcsR CS348_01130 PF06564 Cellulose biosynthesis protein BcsQ CS348_01135 PF03552 Cellulose synthase CS348_01135 PF00535 Glycosyl transferase family 2 CS348_01135 PF07238 PilZ domain CS348_01140 PF03170 Bacterial cellulose synthase subunit CS348_01145 PF01270 Glycosyl hydrolases family 8 CS348_01150 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) CS348_01150 PF13176 Tetratricopeptide repeat CS348_01160 PF17154 Gammaproteobacterial periplasmic sensor domain CS348_01160 PF00990 Diguanylate cyclase, GGDEF domain CS348_01160 PF00672 HAMP domain CS348_01160 PF00563 EAL domain CS348_01165 PF00375 Sodium:dicarboxylate symporter family CS348_01170 PF05193 Peptidase M16 inactive domain CS348_01170 PF00675 Insulinase (Peptidase family M16) CS348_01175 PF00294 pfkB family carbohydrate kinase CS348_01180 PF00563 EAL domain CS348_01185 PF05170 AsmA family CS348_01190 PF07690 Major Facilitator Superfamily CS348_01190 PF00083 Sugar (and other) transporter CS348_01195 PF03631 Virulence factor BrkB CS348_01200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_01200 PF03466 LysR substrate binding domain CS348_01205 PF00196 Bacterial regulatory proteins, luxR family CS348_01220 PF01204 Trehalase CS348_01225 PF00392 Bacterial regulatory proteins, gntR family CS348_01225 PF07702 UTRA domain CS348_01230 PF01380 SIS domain CS348_01235 PF00294 pfkB family carbohydrate kinase CS348_01240 PF03605 Anaerobic c4-dicarboxylate membrane transporter CS348_01245 PF00710 Asparaginase, N-terminal CS348_01245 PF17763 Glutaminase/Asparaginase C-terminal domain CS348_01250 PF07992 Pyridine nucleotide-disulphide oxidoreductase CS348_01250 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CS348_01255 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CS348_01260 PF01569 PAP2 superfamily CS348_01265 PF01432 Peptidase family M3 CS348_01270 PF04445 Putative SAM-dependent methyltransferase CS348_01275 PF00854 POT family CS348_01280 PF00582 Universal stress protein family CS348_01285 PF10625 Universal stress protein B (UspB) CS348_01290 PF01384 Phosphate transporter family CS348_01300 PF13533 Biotin-lipoyl like CS348_01305 PF00005 ABC transporter CS348_01315 PF01402 Ribbon-helix-helix protein, copG family CS348_01315 PF08753 NikR C terminal nickel binding domain CS348_01320 PF01648 4'-phosphopantetheinyl transferase superfamily CS348_01325 PF01594 AI-2E family transporter CS348_01330 PF07690 Major Facilitator Superfamily CS348_01335 PF08786 DcrB CS348_01340 PF02592 Putative vitamin uptake transporter CS348_01345 PF01206 Sulfurtransferase TusA CS348_01350 PF00672 HAMP domain CS348_01350 PF02203 Tar ligand binding domain homologue CS348_01350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CS348_01355 PF00403 Heavy-metal-associated domain CS348_01360 PF07947 YhhN family CS348_01365 PF10694 Protein of unknown function (DUF2500) CS348_01370 PF06611 Protein of unknown function (DUF1145) CS348_01380 PF02881 SRP54-type protein, helical bundle domain CS348_01380 PF00448 SRP54-type protein, GTPase domain CS348_01385 PF00005 ABC transporter CS348_01390 PF02687 FtsX-like permease family CS348_01390 PF18075 FtsX extracellular domain CS348_01395 PF04542 Sigma-70 region 2 CS348_01395 PF04545 Sigma-70, region 4 CS348_01400 PF13458 Periplasmic binding protein CS348_01410 PF12568 Acetyltransferase (GNAT) domain, PanZ CS348_01415 PF13458 Periplasmic binding protein CS348_01420 PF02653 Branched-chain amino acid transport system / permease component CS348_01425 PF02653 Branched-chain amino acid transport system / permease component CS348_01425 PF11862 Domain of unknown function (DUF3382) CS348_01430 PF12399 Branched-chain amino acid ATP-binding cassette transporter CS348_01430 PF00005 ABC transporter CS348_01435 PF00005 ABC transporter CS348_01440 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CS348_01450 PF13416 Bacterial extracellular solute-binding protein CS348_01455 PF00528 Binding-protein-dependent transport system inner membrane component CS348_01460 PF00528 Binding-protein-dependent transport system inner membrane component CS348_01465 PF17912 MalK OB fold domain CS348_01465 PF00005 ABC transporter CS348_01470 PF03009 Glycerophosphoryl diester phosphodiesterase family CS348_01475 PF10956 Protein of unknown function (DUF2756) CS348_01485 PF02126 Phosphotriesterase family CS348_01500 PF00294 pfkB family carbohydrate kinase CS348_01505 PF00583 Acetyltransferase (GNAT) family CS348_01515 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CS348_01515 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CS348_01520 PF02678 Pirin CS348_01520 PF17954 Quercetinase C-terminal cupin domain CS348_01525 PF00356 Bacterial regulatory proteins, lacI family CS348_01525 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CS348_01530 PF01202 Shikimate kinase CS348_01535 PF02447 GntP family permease CS348_01545 PF02774 Semialdehyde dehydrogenase, dimerisation domain CS348_01545 PF01118 Semialdehyde dehydrogenase, NAD binding domain CS348_01550 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CS348_01550 PF00128 Alpha amylase, catalytic domain CS348_01550 PF02806 Alpha amylase, C-terminal all-beta domain CS348_01555 PF18390 Glycogen debranching enzyme C-terminal domain CS348_01555 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CS348_01555 PF00128 Alpha amylase, catalytic domain CS348_01560 PF00483 Nucleotidyl transferase CS348_01565 PF00534 Glycosyl transferases group 1 CS348_01565 PF08323 Starch synthase catalytic domain CS348_01570 PF00343 Carbohydrate phosphorylase CS348_01575 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CS348_01575 PF01266 FAD dependent oxidoreductase CS348_01580 PF00581 Rhodanese-like domain CS348_01585 PF01694 Rhomboid family CS348_01585 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CS348_01590 PF08220 DeoR-like helix-turn-helix domain CS348_01590 PF00455 DeoR C terminal sensor domain CS348_01595 PF00196 Bacterial regulatory proteins, luxR family CS348_01595 PF17874 MalT-like TPR region CS348_01600 PF00343 Carbohydrate phosphorylase CS348_01605 PF02446 4-alpha-glucanotransferase CS348_01610 PF02447 GntP family permease CS348_01615 PF01106 NifU-like domain CS348_01615 PF01521 Iron-sulphur cluster biosynthesis CS348_01620 PF00156 Phosphoribosyl transferase domain CS348_01625 PF00561 alpha/beta hydrolase fold CS348_01630 PF04754 Putative transposase, YhgA-like CS348_01635 PF09012 FeoC like transcriptional regulator CS348_01640 PF07670 Nucleoside recognition CS348_01640 PF02421 Ferrous iron transport protein B CS348_01640 PF17910 FeoB cytosolic helical domain CS348_01640 PF07664 Ferrous iron transport protein B C terminus CS348_01645 PF04023 FeoA domain CS348_01655 PF17674 HHH domain CS348_01655 PF00575 S1 RNA binding domain CS348_01655 PF09371 Tex-like protein N-terminal domain CS348_01655 PF16921 Tex protein YqgF-like domain CS348_01660 PF03449 Transcription elongation factor, N-terminal CS348_01660 PF01272 Transcription elongation factor, GreA/GreB, C-term CS348_01665 PF00486 Transcriptional regulatory protein, C terminal CS348_01665 PF00072 Response regulator receiver domain CS348_01670 PF00672 HAMP domain CS348_01670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_01670 PF00512 His Kinase A (phospho-acceptor) domain CS348_01675 PF01293 Phosphoenolpyruvate carboxykinase CS348_01680 PF13687 Domain of unknown function (DUF4153) CS348_01685 PF01430 Hsp33 protein CS348_01690 PF01479 S4 domain CS348_01695 PF13419 Haloacid dehalogenase-like hydrolase CS348_01700 PF07095 Intracellular growth attenuator protein IgaA CS348_01705 PF00293 NUDIX domain CS348_01710 PF00905 Penicillin binding protein transpeptidase domain CS348_01710 PF00912 Transglycosylase CS348_01710 PF17092 Penicillin-binding protein OB-like domain CS348_01720 PF05137 Fimbrial assembly protein (PilN) CS348_01730 PF10748 DNA utilization proteins HofP CS348_01735 PF03958 Bacterial type II/III secretion system short domain CS348_01735 PF00263 Bacterial type II and III secretion system protein CS348_01750 PF01202 Shikimate kinase CS348_01755 PF01761 3-dehydroquinate synthase CS348_01760 PF05036 Sporulation related domain CS348_01765 PF02086 D12 class N6 adenine-specific DNA methyltransferase CS348_01770 PF00834 Ribulose-phosphate 3 epimerase family CS348_01775 PF13419 Haloacid dehalogenase-like hydrolase CS348_01780 PF00579 tRNA synthetases class I (W and Y) CS348_01785 PF13978 Protein of unknown function (DUF4223) CS348_01795 PF14824 Sirohaem biosynthesis protein central CS348_01795 PF10414 Sirohaem synthase dimerisation region CS348_01795 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CS348_01800 PF01226 Formate/nitrite transporter CS348_01805 PF13806 Rieske-like [2Fe-2S] domain CS348_01810 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CS348_01810 PF07992 Pyridine nucleotide-disulphide oxidoreductase CS348_01810 PF18267 Rubredoxin NAD+ reductase C-terminal domain CS348_01810 PF04324 BFD-like [2Fe-2S] binding domain CS348_01810 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CS348_01815 PF07690 Major Facilitator Superfamily CS348_01820 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CS348_01825 PF10832 Protein of unknown function (DUF2559) CS348_01830 PF02661 Fic/DOC family CS348_01835 PF00117 Glutamine amidotransferase class-I CS348_01840 PF00202 Aminotransferase class-III CS348_01845 PF12805 FUSC-like inner membrane protein yccS CS348_01850 PF13545 Crp-like helix-turn-helix domain CS348_01850 PF00027 Cyclic nucleotide-binding domain CS348_01855 PF02566 OsmC-like protein CS348_01860 PF00485 Phosphoribulokinase / Uridine kinase family CS348_01865 PF06794 Uncharacterised protein family (UPF0270) CS348_01870 PF00561 alpha/beta hydrolase fold CS348_01875 PF08803 Putative mono-oxygenase ydhR CS348_01880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_01880 PF03466 LysR substrate binding domain CS348_01885 PF12848 ABC transporter CS348_01885 PF00005 ABC transporter CS348_01890 PF02525 Flavodoxin-like fold CS348_01895 PF00999 Sodium/hydrogen exchanger family CS348_01895 PF02254 TrkA-N domain CS348_01900 PF09526 Probable metal-binding protein (DUF2387) CS348_01905 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CS348_01910 PF04102 SlyX CS348_01915 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CS348_01915 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CS348_01925 PF01797 Transposase IS200 like CS348_01935 PF13309 HTH domain CS348_01935 PF08348 YheO-like PAS domain CS348_01940 PF02635 DsrE/DsrF-like family CS348_01945 PF02635 DsrE/DsrF-like family CS348_01950 PF04077 DsrH like protein CS348_01955 PF00164 Ribosomal protein S12/S23 CS348_01960 PF00177 Ribosomal protein S7p/S5e CS348_01965 PF00679 Elongation factor G C-terminus CS348_01965 PF03764 Elongation factor G, domain IV CS348_01965 PF03144 Elongation factor Tu domain 2 CS348_01965 PF14492 Elongation Factor G, domain II CS348_01965 PF00009 Elongation factor Tu GTP binding domain CS348_01970 PF03144 Elongation factor Tu domain 2 CS348_01970 PF00009 Elongation factor Tu GTP binding domain CS348_01970 PF03143 Elongation factor Tu C-terminal domain CS348_01985 PF04324 BFD-like [2Fe-2S] binding domain CS348_01990 PF00210 Ferritin-like domain CS348_01995 PF01478 Type IV leader peptidase family CS348_02005 PF00338 Ribosomal protein S10p/S20e CS348_02010 PF00297 Ribosomal protein L3 CS348_02015 PF00573 Ribosomal protein L4/L1 family CS348_02020 PF00276 Ribosomal protein L23 CS348_02025 PF00181 Ribosomal Proteins L2, RNA binding domain CS348_02025 PF03947 Ribosomal Proteins L2, C-terminal domain CS348_02030 PF00203 Ribosomal protein S19 CS348_02035 PF00237 Ribosomal protein L22p/L17e CS348_02040 PF00189 Ribosomal protein S3, C-terminal domain CS348_02040 PF07650 KH domain CS348_02045 PF00252 Ribosomal protein L16p/L10e CS348_02050 PF00831 Ribosomal L29 protein CS348_02055 PF00366 Ribosomal protein S17 CS348_02060 PF00238 Ribosomal protein L14p/L23e CS348_02065 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CS348_02065 PF00467 KOW motif CS348_02070 PF00281 Ribosomal protein L5 CS348_02070 PF00673 ribosomal L5P family C-terminus CS348_02075 PF00253 Ribosomal protein S14p/S29e CS348_02080 PF00410 Ribosomal protein S8 CS348_02085 PF00347 Ribosomal protein L6 CS348_02090 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CS348_02095 PF00333 Ribosomal protein S5, N-terminal domain CS348_02095 PF03719 Ribosomal protein S5, C-terminal domain CS348_02100 PF00327 Ribosomal protein L30p/L7e CS348_02105 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CS348_02110 PF00344 SecY translocase CS348_02115 PF00444 Ribosomal protein L36 CS348_02120 PF00416 Ribosomal protein S13/S18 CS348_02125 PF00411 Ribosomal protein S11 CS348_02130 PF00163 Ribosomal protein S4/S9 N-terminal domain CS348_02130 PF01479 S4 domain CS348_02135 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CS348_02135 PF01000 RNA polymerase Rpb3/RpoA insert domain CS348_02135 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CS348_02140 PF01196 Ribosomal protein L17 CS348_02145 PF09350 Domain of unknown function (DUF1992) CS348_02150 PF13411 MerR HTH family regulatory protein CS348_02155 PF03889 Alternative ribosome-rescue factor A CS348_02160 PF01741 Large-conductance mechanosensitive channel, MscL CS348_02165 PF02080 TrkA-C domain CS348_02165 PF02254 TrkA-N domain CS348_02170 PF01189 16S rRNA methyltransferase RsmB/F CS348_02170 PF01029 NusB family CS348_02175 PF00551 Formyl transferase CS348_02175 PF02911 Formyl transferase, C-terminal domain CS348_02180 PF01327 Polypeptide deformylase CS348_02185 PF17782 DprA winged helix domain CS348_02185 PF02481 DNA recombination-mediator protein A CS348_02190 PF04361 Protein of unknown function (DUF494) CS348_02195 PF01396 Topoisomerase DNA binding C4 zinc finger CS348_02200 PF01300 Telomere recombination CS348_02205 PF08501 Shikimate dehydrogenase substrate binding domain CS348_02205 PF01488 Shikimate / quinate 5-dehydrogenase CS348_02205 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CS348_02210 PF07369 Protein of unknown function (DUF1488) CS348_02215 PF00132 Bacterial transferase hexapeptide (six repeats) CS348_02255 PF00873 AcrB/AcrD/AcrF family CS348_02260 PF00529 HlyD membrane-fusion protein of T1SS CS348_02260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CS348_02265 PF00440 Bacterial regulatory proteins, tetR family CS348_02265 PF08361 MAATS-type transcriptional repressor, C-terminal region CS348_02270 PF03707 Bacterial signalling protein N terminal repeat CS348_02270 PF00990 Diguanylate cyclase, GGDEF domain CS348_02270 PF00563 EAL domain CS348_02275 PF10831 Protein of unknown function (DUF2556) CS348_02280 PF01555 DNA methylase CS348_02285 PF02954 Bacterial regulatory protein, Fis family CS348_02290 PF01207 Dihydrouridine synthase (Dus) CS348_02305 PF00474 Sodium:solute symporter family CS348_02310 PF06196 Protein of unknown function (DUF997) CS348_02315 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CS348_02315 PF00289 Biotin carboxylase, N-terminal domain CS348_02315 PF02785 Biotin carboxylase C-terminal domain CS348_02320 PF00364 Biotin-requiring enzyme CS348_02325 PF01794 Ferric reductase like transmembrane component CS348_02330 PF00174 Oxidoreductase molybdopterin binding domain CS348_02335 PF08240 Alcohol dehydrogenase GroES-like domain CS348_02335 PF00107 Zinc-binding dehydrogenase CS348_02340 PF00563 EAL domain CS348_02340 PF17157 Gammaproteobacterial periplasmic sensor domain CS348_02340 PF00990 Diguanylate cyclase, GGDEF domain CS348_02360 PF04085 rod shape-determining protein MreC CS348_02365 PF04093 rod shape-determining protein MreD CS348_02370 PF02545 Maf-like protein CS348_02375 PF10150 Ribonuclease E/G family CS348_02375 PF00575 S1 RNA binding domain CS348_02380 PF13502 AsmA-like C-terminal region CS348_02380 PF13116 Protein of unknown function CS348_02385 PF01523 Putative modulator of DNA gyrase CS348_02390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_02390 PF03466 LysR substrate binding domain CS348_02395 PF07869 Protein of unknown function (DUF1656) CS348_02400 PF13533 Biotin-lipoyl like CS348_02405 PF04632 Fusaric acid resistance protein family CS348_02410 PF01337 Barstar (barnase inhibitor) CS348_02415 PF07338 Protein of unknown function (DUF1471) CS348_02420 PF07338 Protein of unknown function (DUF1471) CS348_02425 PF01316 Arginine repressor, DNA binding domain CS348_02425 PF02863 Arginine repressor, C-terminal domain CS348_02430 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CS348_02430 PF00056 lactate/malate dehydrogenase, NAD binding domain CS348_02445 PF00939 Sodium:sulfate symporter transmembrane region CS348_02450 PF05681 Fumarate hydratase (Fumerase) CS348_02455 PF05683 Fumarase C-terminus CS348_02460 PF04277 Oxaloacetate decarboxylase, gamma chain CS348_02465 PF00364 Biotin-requiring enzyme CS348_02465 PF00682 HMGL-like CS348_02465 PF02436 Conserved carboxylase domain CS348_02470 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CS348_02475 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CS348_02480 PF13180 PDZ domain CS348_02485 PF13180 PDZ domain CS348_02485 PF00595 PDZ domain CS348_02490 PF06295 Protein of unknown function (DUF1043) CS348_02495 PF03969 AFG1-like ATPase CS348_02500 PF00572 Ribosomal protein L13 CS348_02505 PF00380 Ribosomal protein S9/S16 CS348_02515 PF00043 Glutathione S-transferase, C-terminal domain CS348_02515 PF02798 Glutathione S-transferase, N-terminal domain CS348_02520 PF04386 Stringent starvation protein B CS348_02525 PF07729 FCD domain CS348_02525 PF00392 Bacterial regulatory proteins, gntR family CS348_02530 PF00701 Dihydrodipicolinate synthetase family CS348_02535 PF07690 Major Facilitator Superfamily CS348_02540 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CS348_02545 PF00480 ROK family CS348_02550 PF04074 YhcH/YjgK/YiaL CS348_02555 PF07969 Amidohydrolase family CS348_02560 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CS348_02565 PF17761 DUF1016 N-terminal domain CS348_02565 PF06250 YhcG PDDEXK nuclease domain CS348_02570 PF07992 Pyridine nucleotide-disulphide oxidoreductase CS348_02570 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CS348_02575 PF04898 Glutamate synthase central domain CS348_02575 PF01645 Conserved region in glutamate synthase CS348_02575 PF01493 GXGXG motif CS348_02575 PF00310 Glutamine amidotransferases class-II CS348_02585 PF16199 Radical_SAM C-terminal domain CS348_02585 PF04055 Radical SAM superfamily CS348_02590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_02590 PF00072 Response regulator receiver domain CS348_02590 PF00989 PAS fold CS348_02590 PF01627 Hpt domain CS348_02590 PF18415 Histidine kinase receptor ArcB trans-membrane domain CS348_02590 PF00512 His Kinase A (phospho-acceptor) domain CS348_02600 PF00912 Transglycosylase CS348_02605 PF10707 PhoP regulatory network protein YrbL CS348_02615 PF00381 PTS HPr component phosphorylation site CS348_02620 PF03668 P-loop ATPase protein family CS348_02625 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CS348_02630 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CS348_02635 PF04552 Sigma-54, DNA binding domain CS348_02635 PF04963 Sigma-54 factor, core binding domain CS348_02635 PF00309 Sigma-54 factor, Activator interacting domain (AID) CS348_02640 PF00005 ABC transporter CS348_02640 PF12399 Branched-chain amino acid ATP-binding cassette transporter CS348_02645 PF03968 OstA-like protein CS348_02650 PF06835 Lipopolysaccharide-assembly, LptC-related CS348_02660 PF00571 CBS domain CS348_02660 PF01380 SIS domain CS348_02665 PF01699 Sodium/calcium exchanger protein CS348_02670 PF00005 ABC transporter CS348_02675 PF02405 Permease MlaE CS348_02680 PF02470 MlaD protein CS348_02685 PF05494 MlaC protein CS348_02690 PF13466 STAS domain CS348_02695 PF01722 BolA-like protein CS348_02700 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CS348_02705 PF13693 Winged helix-turn-helix DNA-binding CS348_02710 PF00348 Polyprenyl synthetase CS348_02715 PF00829 Ribosomal prokaryotic L21 protein CS348_02720 PF01016 Ribosomal L27 protein CS348_02725 PF00892 EamA-like transporter family CS348_02730 PF01018 GTP1/OBG CS348_02730 PF01926 50S ribosome-binding GTPase CS348_02735 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CS348_02740 PF01272 Transcription elongation factor, GreA/GreB, C-term CS348_02740 PF03449 Transcription elongation factor, N-terminal CS348_02745 PF01985 CRS1 / YhbY (CRM) domain CS348_02750 PF01728 FtsJ-like methyltransferase CS348_02760 PF17862 AAA+ lid domain CS348_02760 PF06480 FtsH Extracellular CS348_02760 PF01434 Peptidase family M41 CS348_02760 PF00004 ATPase family associated with various cellular activities (AAA) CS348_02765 PF00809 Pterin binding enzyme CS348_02770 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CS348_02770 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CS348_02770 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CS348_02770 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CS348_02775 PF03840 Preprotein translocase SecG subunit CS348_02790 PF00764 Arginosuccinate synthase CS348_02800 PF02576 RimP N-terminal domain CS348_02800 PF17384 RimP C-terminal SH3 domain CS348_02805 PF13184 NusA-like KH domain CS348_02805 PF08529 NusA N-terminal domain CS348_02810 PF11987 Translation-initiation factor 2 CS348_02810 PF04760 Translation initiation factor IF-2, N-terminal region CS348_02810 PF08364 Bacterial translation initiation factor IF-2 associated region CS348_02810 PF00009 Elongation factor Tu GTP binding domain CS348_02815 PF02033 Ribosome-binding factor A CS348_02820 PF16198 tRNA pseudouridylate synthase B C-terminal domain CS348_02820 PF01509 TruB family pseudouridylate synthase (N terminal domain) CS348_02820 PF09157 Pseudouridine synthase II TruB, C-terminal CS348_02825 PF00312 Ribosomal protein S15 CS348_02830 PF00013 KH domain CS348_02830 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CS348_02830 PF01138 3' exoribonuclease family, domain 1 CS348_02830 PF03725 3' exoribonuclease family, domain 2 CS348_02830 PF00575 S1 RNA binding domain CS348_02835 PF07719 Tetratricopeptide repeat CS348_02835 PF13181 Tetratricopeptide repeat CS348_02840 PF03880 DbpA RNA binding domain CS348_02840 PF00270 DEAD/DEAH box helicase CS348_02840 PF00271 Helicase conserved C-terminal domain CS348_02840 PF12343 Cold shock protein DEAD box A CS348_02845 PF03222 Tryptophan/tyrosine permease family CS348_02850 PF00296 Luciferase-like monooxygenase CS348_02870 PF13508 Acetyltransferase (GNAT) domain CS348_02875 PF01541 GIY-YIG catalytic domain CS348_02885 PF01965 DJ-1/PfpI family CS348_02890 PF13460 NAD(P)H-binding CS348_02895 PF04972 BON domain CS348_02900 PF13580 SIS domain CS348_02905 PF02021 Uncharacterised protein family UPF0102 CS348_02910 PF04348 LppC putative lipoprotein CS348_02915 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CS348_02920 PF08220 DeoR-like helix-turn-helix domain CS348_02925 PF08240 Alcohol dehydrogenase GroES-like domain CS348_02925 PF00107 Zinc-binding dehydrogenase CS348_02930 PF03611 PTS system sugar-specific permease component CS348_02935 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CS348_02940 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CS348_02945 PF08013 Tagatose 6 phosphate kinase CS348_02950 PF01116 Fructose-bisphosphate aldolase class-II CS348_02955 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CS348_02955 PF08666 SAF domain CS348_02960 PF03328 HpcH/HpaI aldolase/citrate lyase family CS348_02965 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CS348_02965 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CS348_02970 PF02595 Glycerate kinase family CS348_02995 PF03466 LysR substrate binding domain CS348_02995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_03000 PF00291 Pyridoxal-phosphate dependent enzyme CS348_03005 PF03222 Tryptophan/tyrosine permease family CS348_03010 PF00871 Acetokinase family CS348_03015 PF01228 Glycine radical CS348_03015 PF02901 Pyruvate formate lyase-like CS348_03020 PF03315 Serine dehydratase beta chain CS348_03020 PF03313 Serine dehydratase alpha chain CS348_03030 PF03313 Serine dehydratase alpha chain CS348_03040 PF02678 Pirin CS348_03040 PF17954 Quercetinase C-terminal cupin domain CS348_03045 PF03466 LysR substrate binding domain CS348_03045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_03050 PF05656 Protein of unknown function (DUF805) CS348_03055 PF13409 Glutathione S-transferase, N-terminal domain CS348_03060 PF07681 DoxX CS348_03065 PF13997 YqjK-like protein CS348_03070 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CS348_03075 PF05957 Bacterial protein of unknown function (DUF883) CS348_03080 PF06476 Protein of unknown function (DUF1090) CS348_03085 PF13721 SecD export protein N-terminal TM region CS348_03090 PF09335 SNARE associated Golgi protein CS348_03100 PF00375 Sodium:dicarboxylate symporter family CS348_03105 PF03741 Integral membrane protein TerC family CS348_03110 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CS348_03115 PF02698 DUF218 domain CS348_03120 PF01863 Protein of unknown function DUF45 CS348_03125 PF05175 Methyltransferase small domain CS348_03130 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CS348_03130 PF07992 Pyridine nucleotide-disulphide oxidoreductase CS348_03135 PF00202 Aminotransferase class-III CS348_03145 PF08447 PAS fold CS348_03145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CS348_03150 PF00672 HAMP domain CS348_03150 PF02203 Tar ligand binding domain homologue CS348_03150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CS348_03155 PF03551 Transcriptional regulator PadR-like family CS348_03160 PF08021 Siderophore-interacting FAD-binding domain CS348_03160 PF04954 Siderophore-interacting protein CS348_03170 PF03167 Uracil DNA glycosylase superfamily CS348_03175 PF04546 Sigma-70, non-essential region CS348_03175 PF04542 Sigma-70 region 2 CS348_03175 PF04545 Sigma-70, region 4 CS348_03175 PF04539 Sigma-70 region 3 CS348_03175 PF03979 Sigma-70 factor, region 1.1 CS348_03175 PF00140 Sigma-70 factor, region 1.2 CS348_03180 PF01807 CHC2 zinc finger CS348_03180 PF08275 DNA primase catalytic core, N-terminal domain CS348_03180 PF08278 DNA primase DnaG DnaB-binding CS348_03180 PF10410 DnaB-helicase binding domain of primase CS348_03185 PF01165 Ribosomal protein S21 CS348_03190 PF00814 Glycoprotease family CS348_03195 PF05681 Fumarate hydratase (Fumerase) CS348_03200 PF02660 Glycerol-3-phosphate acyltransferase CS348_03205 PF02152 Dihydroneopterin aldolase CS348_03210 PF02673 Bacitracin resistance protein BacA CS348_03215 PF01966 HD domain CS348_03215 PF01743 Poly A polymerase head domain CS348_03215 PF12627 Probable RNA and SrmB- binding site of polymerase A CS348_03220 PF08239 Bacterial SH3 domain CS348_03225 PF01928 CYTH domain CS348_03230 PF08335 GlnD PII-uridylyltransferase CS348_03230 PF03710 Glutamate-ammonia ligase adenylyltransferase CS348_03235 PF00294 pfkB family carbohydrate kinase CS348_03235 PF01467 Cytidylyltransferase-like CS348_03245 PF01145 SPFH domain / Band 7 family CS348_03245 PF15975 Flotillin CS348_03255 PF08971 Glycogen synthesis protein CS348_03260 PF04380 Membrane fusogenic activity CS348_03265 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CS348_03270 PF02600 Disulfide bond formation protein DsbB CS348_03275 PF01323 DSBA-like thioredoxin domain CS348_03280 PF17425 Arylsulfotransferase Ig-like domain CS348_03280 PF05935 Arylsulfotransferase (ASST) CS348_03290 PF02535 ZIP Zinc transporter CS348_03295 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CS348_03300 PF03738 Glutathionylspermidine synthase preATP-grasp CS348_03305 PF06693 Protein of unknown function (DUF1190) CS348_03315 PF02321 Outer membrane efflux protein CS348_03320 PF00293 NUDIX domain CS348_03325 PF06853 Protein of unknown function (DUF1249) CS348_03330 PF00149 Calcineurin-like phosphoesterase CS348_03335 PF05728 Uncharacterised protein family (UPF0227) CS348_03340 PF00204 DNA gyrase B CS348_03340 PF00986 DNA gyrase B subunit, carboxyl terminus CS348_03340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_03340 PF01751 Toprim domain CS348_03345 PF03992 Antibiotic biosynthesis monooxygenase CS348_03350 PF02525 Flavodoxin-like fold CS348_03355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_03355 PF08521 Two-component sensor kinase N-terminal CS348_03355 PF00512 His Kinase A (phospho-acceptor) domain CS348_03360 PF00072 Response regulator receiver domain CS348_03360 PF00486 Transcriptional regulatory protein, C terminal CS348_03365 PF04076 Bacterial OB fold (BOF) protein CS348_03370 PF06445 GyrI-like small molecule binding domain CS348_03375 PF00521 DNA gyrase/topoisomerase IV, subunit A CS348_03375 PF03989 DNA gyrase C-terminal domain, beta-propeller CS348_03380 PF01553 Acyltransferase CS348_03385 PF07732 Multicopper oxidase CS348_03385 PF07731 Multicopper oxidase CS348_03385 PF00394 Multicopper oxidase CS348_03410 PF11842 Domain of unknown function (DUF3362) CS348_03410 PF04055 Radical SAM superfamily CS348_03410 PF08497 Radical SAM N-terminal CS348_03420 PF04728 Lipoprotein leucine-zipper CS348_03435 PF07969 Amidohydrolase family CS348_03440 PF04728 Lipoprotein leucine-zipper CS348_03445 PF12883 Protein of unknown function (DUF3828) CS348_03455 PF00939 Sodium:sulfate symporter transmembrane region CS348_03460 PF00248 Aldo/keto reductase family CS348_03465 PF00465 Iron-containing alcohol dehydrogenase CS348_03470 PF06719 AraC-type transcriptional regulator N-terminus CS348_03470 PF12833 Helix-turn-helix domain CS348_03475 PF09335 SNARE associated Golgi protein CS348_03480 PF01053 Cys/Met metabolism PLP-dependent enzyme CS348_03490 PF01618 MotA/TolQ/ExbB proton channel family CS348_03495 PF02472 Biopolymer transport protein ExbD/TolR CS348_03520 PF03350 Uncharacterized protein family, UPF0114 CS348_03525 PF00672 HAMP domain CS348_03525 PF02203 Tar ligand binding domain homologue CS348_03525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CS348_03530 PF11115 Protein of unknown function (DUF2623) CS348_03540 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CS348_03540 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CS348_03545 PF13247 4Fe-4S dicluster domain CS348_03550 PF03916 Polysulphide reductase, NrfD CS348_03555 PF00374 Nickel-dependent hydrogenase CS348_03560 PF01750 Hydrogenase maturation protease CS348_03565 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE CS348_03570 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CS348_03575 PF01455 HupF/HypC family CS348_03590 PF02798 Glutathione S-transferase, N-terminal domain CS348_03595 PF05257 CHAP domain CS348_03595 PF03738 Glutathionylspermidine synthase preATP-grasp CS348_03605 PF02614 Glucuronate isomerase CS348_03610 PF08125 Mannitol dehydrogenase C-terminal domain CS348_03610 PF01232 Mannitol dehydrogenase Rossmann domain CS348_03615 PF03786 D-mannonate dehydratase (UxuA) CS348_03625 PF07690 Major Facilitator Superfamily CS348_03630 PF03573 outer membrane porin, OprD family CS348_03640 PF00703 Glycosyl hydrolases family 2 CS348_03640 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CS348_03640 PF02837 Glycosyl hydrolases family 2, sugar binding domain CS348_03645 PF00440 Bacterial regulatory proteins, tetR family CS348_03655 PF01522 Polysaccharide deacetylase CS348_03665 PF04965 Gene 25-like lysozyme CS348_03670 PF00171 Aldehyde dehydrogenase family CS348_03675 PF01266 FAD dependent oxidoreductase CS348_03685 PF13520 Amino acid permease CS348_03695 PF00196 Bacterial regulatory proteins, luxR family CS348_03700 PF04055 Radical SAM superfamily CS348_03705 PF00884 Sulfatase CS348_03710 PF03466 LysR substrate binding domain CS348_03710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_03715 PF03328 HpcH/HpaI aldolase/citrate lyase family CS348_03720 PF01575 MaoC like domain CS348_03725 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CS348_03725 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CS348_03730 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CS348_03735 PF13614 AAA domain CS348_03750 PF00772 DnaB-like helicase N terminal domain CS348_03750 PF03796 DnaB-like helicase C terminal domain CS348_03760 PF01258 Prokaryotic dksA/traR C4-type zinc finger CS348_03795 PF01131 DNA topoisomerase CS348_03795 PF01751 Toprim domain CS348_03810 PF00436 Single-strand binding protein family CS348_03815 PF04754 Putative transposase, YhgA-like CS348_03820 PF01661 Macro domain CS348_03850 PF00437 Type II/IV secretion system protein CS348_03865 PF01464 Transglycosylase SLT domain CS348_03875 PF04917 Bacterial shufflon protein, N-terminal constant region CS348_03885 PF00589 Phage integrase family CS348_04050 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CS348_04050 PF08479 POTRA domain, ShlB-type CS348_04085 PF11922 Domain of unknown function (DUF3440) CS348_04085 PF01507 Phosphoadenosine phosphosulfate reductase family CS348_04095 PF02195 ParB-like nuclease domain CS348_04130 PF00419 Fimbrial protein CS348_04135 PF00577 Outer membrane usher protein CS348_04135 PF13954 PapC N-terminal domain CS348_04135 PF13953 PapC C-terminal domain CS348_04140 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CS348_04140 PF02753 Pili assembly chaperone PapD, C-terminal domain CS348_04310 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CS348_04310 PF03625 Domain of unknown function DUF302 CS348_04315 PF07690 Major Facilitator Superfamily CS348_04320 PF01042 Endoribonuclease L-PSP CS348_04330 PF08348 YheO-like PAS domain CS348_04330 PF13309 HTH domain CS348_04345 PF00717 Peptidase S24-like CS348_04350 PF00580 UvrD/REP helicase N-terminal domain CS348_04350 PF13361 UvrD-like helicase C-terminal domain CS348_04360 PF00589 Phage integrase family CS348_04370 PF04474 Protein of unknown function (DUF554) CS348_04380 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CS348_04380 PF01276 Orn/Lys/Arg decarboxylase, major domain CS348_04380 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CS348_04385 PF03825 Nucleoside H+ symporter CS348_04390 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CS348_04390 PF01464 Transglycosylase SLT domain CS348_04395 PF04362 Bacterial Fe(2+) trafficking CS348_04400 PF14815 NUDIX domain CS348_04400 PF00730 HhH-GPD superfamily base excision DNA repair protein CS348_04400 PF00633 Helix-hairpin-helix motif CS348_04410 PF02390 Putative methyltransferase CS348_04415 PF04320 Protein with unknown function (DUF469) CS348_04420 PF11101 Protein of unknown function (DUF2884) CS348_04425 PF00710 Asparaginase, N-terminal CS348_04425 PF17763 Glutaminase/Asparaginase C-terminal domain CS348_04430 PF06717 Protein of unknown function (DUF1202) CS348_04435 PF04055 Radical SAM superfamily CS348_04435 PF06969 HemN C-terminal domain CS348_04440 PF01725 Ham1 family CS348_04445 PF02594 Uncharacterised ACR, YggU family COG1872 CS348_04450 PF02325 YGGT family CS348_04455 PF01168 Alanine racemase, N-terminal domain CS348_04460 PF00437 Type II/IV secretion system protein CS348_04470 PF03652 Holliday junction resolvase CS348_04475 PF02622 Uncharacterized ACR, COG1678 CS348_04480 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CS348_04480 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CS348_04485 PF04452 RNA methyltransferase CS348_04490 PF04231 Endonuclease I CS348_04495 PF10263 SprT-like family CS348_04495 PF17283 SprT-like zinc ribbon domain CS348_04500 PF00083 Sugar (and other) transporter CS348_04505 PF00438 S-adenosylmethionine synthetase, N-terminal domain CS348_04505 PF02773 S-adenosylmethionine synthetase, C-terminal domain CS348_04505 PF02772 S-adenosylmethionine synthetase, central domain CS348_04525 PF17944 Arginine decarboxylase C-terminal helical extension CS348_04525 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CS348_04525 PF17810 Arginine decarboxylase helical bundle domain CS348_04530 PF00491 Arginase family CS348_04535 PF01435 Peptidase family M48 CS348_04540 PF02779 Transketolase, pyrimidine binding domain CS348_04540 PF02780 Transketolase, C-terminal domain CS348_04540 PF00456 Transketolase, thiamine diphosphate binding domain CS348_04545 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CS348_04550 PF02378 Phosphotransferase system, EIIC CS348_04550 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CS348_04555 PF08240 Alcohol dehydrogenase GroES-like domain CS348_04555 PF00107 Zinc-binding dehydrogenase CS348_04560 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CS348_04565 PF05068 Mannitol repressor CS348_04575 PF00005 ABC transporter CS348_04580 PF00005 ABC transporter CS348_04605 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CS348_04605 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CS348_04610 PF00162 Phosphoglycerate kinase CS348_04615 PF01116 Fructose-bisphosphate aldolase class-II CS348_04620 PF05552 Conserved TM helix CS348_04620 PF00924 Mechanosensitive ion channel CS348_04625 PF01810 LysE type translocator CS348_04630 PF04402 Protein of unknown function (DUF541) CS348_04635 PF03466 LysR substrate binding domain CS348_04635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_04640 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CS348_04645 PF01842 ACT domain CS348_04645 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CS348_04645 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CS348_04650 PF01812 5-formyltetrahydrofolate cyclo-ligase family CS348_04660 PF05164 Cell division protein ZapA CS348_04670 PF03695 Uncharacterised protein family (UPF0149) CS348_04675 PF00557 Metallopeptidase family M24 CS348_04675 PF05195 Aminopeptidase P, N-terminal domain CS348_04680 PF01494 FAD binding domain CS348_04685 PF01494 FAD binding domain CS348_04690 PF01571 Aminomethyltransferase folate-binding domain CS348_04690 PF08669 Glycine cleavage T-protein C-terminal barrel domain CS348_04695 PF01597 Glycine cleavage H-protein CS348_04700 PF02347 Glycine cleavage system P-protein CS348_04715 PF00232 Glycosyl hydrolase family 1 CS348_04725 PF03006 Haemolysin-III related CS348_04735 PF01571 Aminomethyltransferase folate-binding domain CS348_04745 PF03937 Flavinator of succinate dehydrogenase CS348_04750 PF07254 Membrane-bound toxin component of toxin-antitoxin system CS348_04755 PF00258 Flavodoxin CS348_04760 PF02899 Phage integrase, N-terminal SAM-like domain CS348_04760 PF00589 Phage integrase family CS348_04765 PF10411 Disulfide bond isomerase protein N-terminus CS348_04765 PF13098 Thioredoxin-like domain CS348_04770 PF17768 RecJ OB domain CS348_04770 PF01368 DHH family CS348_04770 PF02272 DHHA1 domain CS348_04780 PF00152 tRNA synthetases class II (D, K and N) CS348_04780 PF01336 OB-fold nucleic acid binding domain CS348_04785 PF00293 NUDIX domain CS348_04795 PF01551 Peptidase family M23 CS348_04795 PF01476 LysM domain CS348_04810 PF01850 PIN domain CS348_04825 PF13505 Outer membrane protein beta-barrel domain CS348_04835 PF00419 Fimbrial protein CS348_04840 PF13953 PapC C-terminal domain CS348_04840 PF13954 PapC N-terminal domain CS348_04840 PF00577 Outer membrane usher protein CS348_04845 PF02753 Pili assembly chaperone PapD, C-terminal domain CS348_04845 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CS348_04865 PF03824 High-affinity nickel-transport protein CS348_04870 PF02583 Metal-sensitive transcriptional repressor CS348_04875 PF03222 Tryptophan/tyrosine permease family CS348_04885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_04885 PF03466 LysR substrate binding domain CS348_04890 PF00108 Thiolase, N-terminal domain CS348_04890 PF02803 Thiolase, C-terminal domain CS348_04900 PF04962 KduI/IolB family CS348_04915 PF00083 Sugar (and other) transporter CS348_04920 PF01177 Asp/Glu/Hydantoin racemase CS348_04925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_04925 PF03466 LysR substrate binding domain CS348_04930 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CS348_04930 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CS348_04935 PF00356 Bacterial regulatory proteins, lacI family CS348_04940 PF00356 Bacterial regulatory proteins, lacI family CS348_04945 PF00501 AMP-binding enzyme CS348_04945 PF01553 Acyltransferase CS348_04950 PF07690 Major Facilitator Superfamily CS348_04955 PF00248 Aldo/keto reductase family CS348_04960 PF06004 Bacterial protein of unknown function (DUF903) CS348_04965 PF03741 Integral membrane protein TerC family CS348_04970 PF02976 DNA mismatch repair enzyme MutH CS348_04975 PF00293 NUDIX domain CS348_04980 PF02896 PEP-utilising enzyme, TIM barrel domain CS348_04980 PF00391 PEP-utilising enzyme, mobile domain CS348_04980 PF05524 PEP-utilising enzyme, N-terminal CS348_04980 PF01590 GAF domain CS348_04985 PF01790 Prolipoprotein diacylglyceryl transferase CS348_04990 PF00303 Thymidylate synthase CS348_05000 PF07963 Prokaryotic N-terminal methylation motif CS348_05005 PF07963 Prokaryotic N-terminal methylation motif CS348_05010 PF10713 Protein of unknown function (DUF2509) CS348_05015 PF12528 Type II secretion prepilin peptidase dependent protein C CS348_05015 PF07963 Prokaryotic N-terminal methylation motif CS348_05020 PF17946 RecC C-terminal domain CS348_05025 PF16187 Middle or third domain of peptidase_M16 CS348_05025 PF00675 Insulinase (Peptidase family M16) CS348_05025 PF05193 Peptidase M16 inactive domain CS348_05030 PF00580 UvrD/REP helicase N-terminal domain CS348_05030 PF12705 PD-(D/E)XK nuclease superfamily CS348_05030 PF13361 UvrD-like helicase C-terminal domain CS348_05035 PF13538 UvrD-like helicase C-terminal domain CS348_05040 PF00696 Amino acid kinase family CS348_05040 PF00583 Acetyltransferase (GNAT) family CS348_05045 PF11741 AMIN domain CS348_05045 PF01520 N-acetylmuramoyl-L-alanine amidase CS348_05060 PF03562 MltA specific insert domain CS348_05060 PF06725 3D domain CS348_05065 PF00899 ThiF family CS348_05070 PF00892 EamA-like transporter family CS348_05075 PF02657 Fe-S metabolism associated domain CS348_05080 PF00266 Aminotransferase class-V CS348_05085 PF06004 Bacterial protein of unknown function (DUF903) CS348_05090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_05090 PF03466 LysR substrate binding domain CS348_05095 PF04241 Protein of unknown function (DUF423) CS348_05100 PF18125 RlmM ferredoxin-like domain CS348_05100 PF01728 FtsJ-like methyltransferase CS348_05105 PF08220 DeoR-like helix-turn-helix domain CS348_05105 PF00455 DeoR C terminal sensor domain CS348_05110 PF05025 RbsD / FucU transport protein family CS348_05115 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CS348_05115 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CS348_05120 PF02952 L-fucose isomerase, C-terminal domain CS348_05120 PF07881 L-fucose isomerase, first N-terminal domain CS348_05120 PF07882 L-fucose isomerase, second N-terminal domain CS348_05125 PF07690 Major Facilitator Superfamily CS348_05130 PF00596 Class II Aldolase and Adducin N-terminal domain CS348_05135 PF00465 Iron-containing alcohol dehydrogenase CS348_05140 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CS348_05140 PF01367 5'-3' exonuclease, C-terminal SAM fold CS348_05150 PF03315 Serine dehydratase beta chain CS348_05150 PF03313 Serine dehydratase alpha chain CS348_05160 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CS348_05160 PF03641 Possible lysine decarboxylase CS348_05160 PF11892 Domain of unknown function (DUF3412) CS348_05165 PF14489 QueF-like protein CS348_05165 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CS348_05170 PF07348 Syd protein (SUKH-2) CS348_05180 PF04287 tRNA pseudouridine synthase C CS348_05185 PF00849 RNA pseudouridylate synthase CS348_05190 PF00258 Flavodoxin CS348_05200 PF07690 Major Facilitator Superfamily CS348_05205 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CS348_05205 PF13378 Enolase C-terminal domain-like CS348_05210 PF13378 Enolase C-terminal domain-like CS348_05215 PF02595 Glycerate kinase family CS348_05220 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CS348_05220 PF00072 Response regulator receiver domain CS348_05220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_05220 PF00672 HAMP domain CS348_05220 PF00512 His Kinase A (phospho-acceptor) domain CS348_05220 PF01627 Hpt domain CS348_05225 PF01938 TRAM domain CS348_05225 PF05958 tRNA (Uracil-5-)-methyltransferase CS348_05230 PF02824 TGS domain CS348_05230 PF13291 ACT domain CS348_05230 PF04607 Region found in RelA / SpoT proteins CS348_05235 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CS348_05250 PF03819 MazG nucleotide pyrophosphohydrolase domain CS348_05255 PF00117 Glutamine amidotransferase class-I CS348_05255 PF06418 CTP synthase N-terminus CS348_05260 PF00113 Enolase, C-terminal TIM barrel domain CS348_05260 PF03952 Enolase, N-terminal domain CS348_05265 PF04055 Radical SAM superfamily CS348_05270 PF03099 Biotin/lipoate A/B protein ligase family CS348_05270 PF12706 Beta-lactamase superfamily domain CS348_05275 PF01242 6-pyruvoyl tetrahydropterin synthase CS348_05285 PF00175 Oxidoreductase NAD-binding domain CS348_05285 PF00667 FAD binding domain CS348_05285 PF00258 Flavodoxin CS348_05290 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CS348_05290 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CS348_05300 PF01507 Phosphoadenosine phosphosulfate reductase family CS348_05305 PF11047 Salmonella outer protein D CS348_05310 PF18019 HD domain CS348_05310 PF00270 DEAD/DEAH box helicase CS348_05310 PF00271 Helicase conserved C-terminal domain CS348_05325 PF09344 CT1975-like protein CS348_05330 PF09704 CRISPR-associated protein (Cas_Cas5) CS348_05340 PF01867 CRISPR associated protein Cas1 CS348_05345 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) CS348_05350 PF04389 Peptidase family M28 CS348_05355 PF01507 Phosphoadenosine phosphosulfate reductase family CS348_05360 PF00009 Elongation factor Tu GTP binding domain CS348_05370 PF12084 Protein of unknown function (DUF3561) CS348_05375 PF04977 Septum formation initiator CS348_05380 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CS348_05385 PF02542 YgbB family CS348_05390 PF01142 tRNA pseudouridine synthase D (TruD) CS348_05395 PF01975 Survival protein SurE CS348_05405 PF01476 LysM domain CS348_05405 PF01551 Peptidase family M23 CS348_05410 PF04545 Sigma-70, region 4 CS348_05410 PF00140 Sigma-70 factor, region 1.2 CS348_05410 PF04539 Sigma-70 region 3 CS348_05410 PF04542 Sigma-70 region 2 CS348_05420 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CS348_05425 PF02441 Flavoprotein CS348_05430 PF01047 MarR family CS348_05435 PF08220 DeoR-like helix-turn-helix domain CS348_05435 PF00455 DeoR C terminal sensor domain CS348_05440 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CS348_05440 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CS348_05445 PF07005 Sugar-binding N-terminal domain CS348_05445 PF17042 Nucleotide-binding C-terminal domain CS348_05450 PF00596 Class II Aldolase and Adducin N-terminal domain CS348_05455 PF01261 Xylose isomerase-like TIM barrel CS348_05460 PF01370 NAD dependent epimerase/dehydratase family CS348_05465 PF02447 GntP family permease CS348_05470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_05470 PF03466 LysR substrate binding domain CS348_05475 PF07690 Major Facilitator Superfamily CS348_05485 PF00488 MutS domain V CS348_05485 PF01624 MutS domain I CS348_05485 PF05188 MutS domain II CS348_05485 PF05192 MutS domain III CS348_05485 PF05190 MutS family domain IV CS348_05495 PF00149 Calcineurin-like phosphoesterase CS348_05520 PF04741 InvH outer membrane lipoprotein CS348_05525 PF12833 Helix-turn-helix domain CS348_05535 PF07201 HrpJ-like domain CS348_05540 PF00771 FHIPEP family CS348_05545 PF03519 Invasion protein B family CS348_05550 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CS348_05550 PF02874 ATP synthase alpha/beta family, beta-barrel domain CS348_05550 PF18269 T3SS EscN ATPase C-terminal domain CS348_05555 PF02090 Salmonella surface presentation of antigen gene type M protein CS348_05560 PF02510 Surface presentation of antigens protein CS348_05565 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CS348_05570 PF00813 FliP family CS348_05575 PF01313 Bacterial export proteins, family 3 CS348_05580 PF01311 Bacterial export proteins, family 1 CS348_05585 PF01312 FlhB HrpN YscU SpaS Family CS348_05590 PF07720 Tetratricopeptide repeat CS348_05595 PF04888 Secretion system effector C (SseC) like family CS348_05595 PF16535 Type III cell invasion protein SipB CS348_05600 PF09599 Salmonella-Shigella invasin protein C (IpaC_SipC) CS348_05605 PF06511 Type III secretion systems tip complex components CS348_05610 PF09052 SipA N-terminal domain CS348_05615 PF00550 Phosphopantetheine attachment site CS348_05625 PF05932 Tir chaperone protein (CesT) family CS348_05630 PF09119 SicP binding CS348_05630 PF00102 Protein-tyrosine phosphatase CS348_05630 PF03545 Yersinia virulence determinant (YopE) CS348_05640 PF01464 Transglycosylase SLT domain CS348_05645 PF00486 Transcriptional regulatory protein, C terminal CS348_05650 PF12833 Helix-turn-helix domain CS348_05655 PF09480 Type III secretion system protein PrgH-EprH (PrgH) CS348_05660 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF CS348_05670 PF01514 Secretory protein of YscJ/FliF family CS348_05675 PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) CS348_05690 PF12833 Helix-turn-helix domain CS348_05710 PF00950 ABC 3 transport family CS348_05715 PF00950 ABC 3 transport family CS348_05720 PF00005 ABC transporter CS348_05725 PF01297 Zinc-uptake complex component A periplasmic CS348_05730 PF11756 Nitrous oxide-stimulated promoter CS348_05735 PF02954 Bacterial regulatory protein, Fis family CS348_05735 PF00158 Sigma-54 interaction domain CS348_05735 PF01590 GAF domain CS348_05740 PF00586 AIR synthase related protein, N-terminal domain CS348_05740 PF02769 AIR synthase related protein, C-terminal domain CS348_05745 PF01924 Hydrogenase formation hypA family CS348_05750 PF01455 HupF/HypC family CS348_05755 PF02492 CobW/HypB/UreG, nucleotide-binding domain CS348_05760 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CS348_05775 PF13247 4Fe-4S dicluster domain CS348_05780 PF00361 Proton-conducting membrane transporter CS348_05785 PF00146 NADH dehydrogenase CS348_05790 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CS348_05790 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CS348_05790 PF00374 Nickel-dependent hydrogenase CS348_05795 PF12838 4Fe-4S dicluster domain CS348_05800 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CS348_05805 PF07450 Formate hydrogenlyase maturation protein HycH CS348_05810 PF01750 Hydrogenase maturation protease CS348_05820 PF13247 4Fe-4S dicluster domain CS348_05820 PF12800 4Fe-4S binding domain CS348_05825 PF07503 HypF finger CS348_05825 PF01300 Telomere recombination CS348_05825 PF00708 Acylphosphatase CS348_05825 PF17788 HypF Kae1-like domain CS348_05830 PF18113 Rubredoxin binding C-terminal domain CS348_05830 PF07992 Pyridine nucleotide-disulphide oxidoreductase CS348_05835 PF00258 Flavodoxin CS348_05835 PF00753 Metallo-beta-lactamase superfamily CS348_05835 PF00301 Rubredoxin CS348_05840 PF01590 GAF domain CS348_05840 PF00158 Sigma-54 interaction domain CS348_05845 PF00571 CBS domain CS348_05845 PF01380 SIS domain CS348_05850 PF00455 DeoR C terminal sensor domain CS348_05850 PF08220 DeoR-like helix-turn-helix domain CS348_05855 PF06923 Glucitol operon activator protein (GutM) CS348_05860 PF00106 short chain dehydrogenase CS348_05865 PF03829 PTS system glucitol/sorbitol-specific IIA component CS348_05870 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CS348_05870 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CS348_05875 PF03608 PTS system enzyme II sorbitol-specific factor CS348_05880 PF13406 Transglycosylase SLT domain CS348_05890 PF02464 Competence-damaged protein CS348_05895 PF00154 recA bacterial DNA recombination protein CS348_05900 PF02631 RecX family CS348_05910 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CS348_05910 PF02272 DHHA1 domain CS348_05910 PF01411 tRNA synthetases class II (A) CS348_05915 PF02599 Global regulator protein family CS348_05950 PF13419 Haloacid dehalogenase-like hydrolase CS348_05955 PF09335 SNARE associated Golgi protein CS348_05960 PF04262 Glutamate-cysteine ligase CS348_05965 PF02664 S-Ribosylhomocysteinase (LuxS) CS348_05975 PF07690 Major Facilitator Superfamily CS348_05980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CS348_05980 PF00529 HlyD membrane-fusion protein of T1SS CS348_05985 PF01047 MarR family CS348_05995 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CS348_06000 PF00528 Binding-protein-dependent transport system inner membrane component CS348_06005 PF00571 CBS domain CS348_06005 PF00005 ABC transporter CS348_06015 PF00268 Ribonucleotide reductase, small chain CS348_06020 PF02867 Ribonucleotide reductase, barrel domain CS348_06020 PF08343 Ribonucleotide reductase N-terminal CS348_06020 PF00317 Ribonucleotide reductase, all-alpha domain CS348_06025 PF07972 NrdI Flavodoxin like CS348_06030 PF00462 Glutaredoxin CS348_06040 PF02627 Carboxymuconolactone decarboxylase family CS348_06045 PF00155 Aminotransferase class I and II CS348_06045 PF00392 Bacterial regulatory proteins, gntR family CS348_06050 PF05957 Bacterial protein of unknown function (DUF883) CS348_06055 PF09400 Protein of unknown function (DUF2002) CS348_06060 PF06610 L-alanine exporter CS348_06080 PF00816 H-NS histone family CS348_06090 PF11127 Protein of unknown function (DUF2892) CS348_06090 PF00581 Rhodanese-like domain CS348_06095 PF01022 Bacterial regulatory protein, arsR family CS348_06100 PF01679 Proteolipid membrane potential modulator CS348_06110 PF04972 BON domain CS348_06110 PF01476 LysM domain CS348_06115 PF00392 Bacterial regulatory proteins, gntR family CS348_06115 PF07729 FCD domain CS348_06120 PF00324 Amino acid permease CS348_06125 PF00202 Aminotransferase class-III CS348_06130 PF00171 Aldehyde dehydrogenase family CS348_06135 PF01266 FAD dependent oxidoreductase CS348_06140 PF08943 CsiD CS348_06145 PF01970 Tripartite tricarboxylate transporter TctA family CS348_06160 PF00486 Transcriptional regulatory protein, C terminal CS348_06160 PF00072 Response regulator receiver domain CS348_06165 PF08521 Two-component sensor kinase N-terminal CS348_06165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_06165 PF00512 His Kinase A (phospho-acceptor) domain CS348_06170 PF03824 High-affinity nickel-transport protein CS348_06185 PF04393 Protein of unknown function (DUF535) CS348_06190 PF00805 Pentapeptide repeats (8 copies) CS348_06200 PF07715 TonB-dependent Receptor Plug Domain CS348_06200 PF00593 TonB dependent receptor CS348_06205 PF00756 Putative esterase CS348_06215 PF00664 ABC transporter transmembrane region CS348_06215 PF00005 ABC transporter CS348_06220 PF06722 Protein of unknown function (DUF1205) CS348_06230 PF00669 Bacterial flagellin N-terminal helical region CS348_06230 PF00700 Bacterial flagellin C-terminal helical region CS348_06230 PF08884 Flagellin D3 domain CS348_06235 PF03614 Repressor of phase-1 flagellin CS348_06260 PF00589 Phage integrase family CS348_06330 PF13356 Arm DNA-binding domain CS348_06330 PF00589 Phage integrase family CS348_06340 PF00529 HlyD membrane-fusion protein of T1SS CS348_06340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CS348_06345 PF00005 ABC transporter CS348_06345 PF00664 ABC transporter transmembrane region CS348_06360 PF01668 SmpB protein CS348_06365 PF03364 Polyketide cyclase / dehydrase and lipid transport CS348_06370 PF03658 RnfH family Ubiquitin CS348_06375 PF04355 SmpA / OmlA family CS348_06380 PF02463 RecF/RecN/SMC N terminal domain CS348_06385 PF01513 ATP-NAD kinase CS348_06395 PF01025 GrpE CS348_06405 PF01595 Cyclin M transmembrane N-terminal domain CS348_06405 PF00571 CBS domain CS348_06405 PF03471 Transporter associated domain CS348_06410 PF01578 Cytochrome C assembly protein CS348_06420 PF00448 SRP54-type protein, GTPase domain CS348_06420 PF02881 SRP54-type protein, helical bundle domain CS348_06420 PF02978 Signal peptide binding domain CS348_06425 PF00886 Ribosomal protein S16 CS348_06430 PF01782 RimM N-terminal domain CS348_06430 PF05239 PRC-barrel domain CS348_06435 PF01746 tRNA (Guanine-1)-methyltransferase CS348_06440 PF01245 Ribosomal protein L19 CS348_06445 PF00990 Diguanylate cyclase, GGDEF domain CS348_06445 PF17152 Periplasmic sensor domain CS348_06450 PF13689 YfiR/HmsC-like CS348_06455 PF00793 DAHP synthetase I family CS348_06460 PF01817 Chorismate mutase type II CS348_06460 PF02153 Prephenate dehydrogenase CS348_06465 PF08450 SMP-30/Gluconolactonase/LRE-like region CS348_06470 PF00800 Prephenate dehydratase CS348_06470 PF01817 Chorismate mutase type II CS348_06475 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CS348_06480 PF13525 Outer membrane lipoprotein CS348_06485 PF00849 RNA pseudouridylate synthase CS348_06485 PF01479 S4 domain CS348_06495 PF00004 ATPase family associated with various cellular activities (AAA) CS348_06495 PF07724 AAA domain (Cdc48 subfamily) CS348_06495 PF17871 AAA lid domain CS348_06495 PF02861 Clp amino terminal domain, pathogenicity island component CS348_06495 PF10431 C-terminal, D2-small domain, of ClpB protein CS348_06525 PF00083 Sugar (and other) transporter CS348_06530 PF10043 Predicted periplasmic lipoprotein (DUF2279) CS348_06535 PF13091 PLD-like domain CS348_06540 PF13607 Succinyl-CoA ligase like flavodoxin domain CS348_06540 PF00583 Acetyltransferase (GNAT) family CS348_06540 PF13380 CoA binding domain CS348_06550 PF00085 Thioredoxin CS348_06560 PF00588 SpoU rRNA Methylase family CS348_06560 PF08032 RNA 2'-O ribose methyltransferase substrate binding CS348_06565 PF03167 Uracil DNA glycosylase superfamily CS348_06570 PF01228 Glycine radical CS348_06575 PF01810 LysE type translocator CS348_06580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_06580 PF03466 LysR substrate binding domain CS348_06585 PF00271 Helicase conserved C-terminal domain CS348_06585 PF00270 DEAD/DEAH box helicase CS348_06590 PF05175 Methyltransferase small domain CS348_06595 PF02910 Fumarate reductase flavoprotein C-term CS348_06595 PF00890 FAD binding domain CS348_06605 PF08281 Sigma-70, region 4 CS348_06605 PF04542 Sigma-70 region 2 CS348_06610 PF03872 Anti sigma-E protein RseA, N-terminal domain CS348_06610 PF03873 Anti sigma-E protein RseA, C-terminal domain CS348_06615 PF03888 MucB/RseB N-terminal domain CS348_06615 PF17188 MucB/RseB C-terminal domain CS348_06630 PF00009 Elongation factor Tu GTP binding domain CS348_06630 PF03144 Elongation factor Tu domain 2 CS348_06630 PF00679 Elongation factor G C-terminus CS348_06630 PF06421 GTP-binding protein LepA C-terminus CS348_06635 PF10502 Signal peptidase, peptidase S26 CS348_06645 PF14622 Ribonuclease-III-like CS348_06645 PF00035 Double-stranded RNA binding motif CS348_06650 PF01926 50S ribosome-binding GTPase CS348_06650 PF07650 KH domain CS348_06655 PF02565 Recombination protein O C terminal CS348_06655 PF11967 Recombination protein O N terminal CS348_06660 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CS348_06665 PF01648 4'-phosphopantetheinyl transferase superfamily CS348_06670 PF12838 4Fe-4S dicluster domain CS348_06675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_06675 PF03466 LysR substrate binding domain CS348_06680 PF07690 Major Facilitator Superfamily CS348_06685 PF08546 Ketopantoate reductase PanE/ApbA C terminal CS348_06685 PF02558 Ketopantoate reductase PanE/ApbA CS348_06690 PF01418 Helix-turn-helix domain, rpiR family CS348_06690 PF01380 SIS domain CS348_06695 PF01380 SIS domain CS348_06700 PF02378 Phosphotransferase system, EIIC CS348_06700 PF00367 phosphotransferase system, EIIB CS348_06710 PF14437 MafB19-like deaminase CS348_06715 PF00497 Bacterial extracellular solute-binding proteins, family 3 CS348_06715 PF01464 Transglycosylase SLT domain CS348_06725 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CS348_06725 PF02769 AIR synthase related protein, C-terminal domain CS348_06725 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CS348_06730 PF00512 His Kinase A (phospho-acceptor) domain CS348_06730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_06735 PF13942 YfhG lipoprotein CS348_06740 PF00158 Sigma-54 interaction domain CS348_06740 PF00072 Response regulator receiver domain CS348_06745 PF00543 Nitrogen regulatory protein P-II CS348_06750 PF00854 POT family CS348_06755 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CS348_06755 PF01276 Orn/Lys/Arg decarboxylase, major domain CS348_06755 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CS348_06760 PF13520 Amino acid permease CS348_06765 PF00486 Transcriptional regulatory protein, C terminal CS348_06765 PF18500 CadC C-terminal domain 1 CS348_06770 PF00970 Oxidoreductase FAD-binding domain CS348_06770 PF00042 Globin CS348_06770 PF00175 Oxidoreductase NAD-binding domain CS348_06775 PF00464 Serine hydroxymethyltransferase CS348_06780 PF12832 MFS_1 like family CS348_06785 PF00874 PRD domain CS348_06795 PF03824 High-affinity nickel-transport protein CS348_06800 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CS348_06800 PF13187 4Fe-4S dicluster domain CS348_06800 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CS348_06805 PF00175 Oxidoreductase NAD-binding domain CS348_06805 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CS348_06810 PF17179 4Fe-4S dicluster domain CS348_06815 PF12146 Serine aminopeptidase, S33 CS348_06820 PF00459 Inositol monophosphatase family CS348_06825 PF00588 SpoU rRNA Methylase family CS348_06830 PF02082 Transcriptional regulator CS348_06835 PF00266 Aminotransferase class-V CS348_06840 PF01592 NifU-like N terminal domain CS348_06845 PF01521 Iron-sulphur cluster biosynthesis CS348_06850 PF07743 HSCB C-terminal oligomerisation domain CS348_06855 PF00012 Hsp70 protein CS348_06860 PF00111 2Fe-2S iron-sulfur cluster binding domain CS348_06865 PF04384 Iron-sulphur cluster assembly CS348_06870 PF00883 Cytosol aminopeptidase family, catalytic domain CS348_06870 PF12404 Peptidase CS348_06875 PF14581 SseB protein C-terminal domain CS348_06875 PF07179 SseB protein N-terminal domain CS348_06890 PF00581 Rhodanese-like domain CS348_06895 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CS348_06895 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CS348_06895 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CS348_06895 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CS348_06895 PF17962 Bacterial macroglobulin domain 6 CS348_06895 PF01835 MG2 domain CS348_06895 PF07678 A-macroglobulin TED domain CS348_06895 PF00207 Alpha-2-macroglobulin family CS348_06895 PF07703 Alpha-2-macroglobulin bait region domain CS348_06900 PF00912 Transglycosylase CS348_06900 PF06832 Penicillin-Binding Protein C-terminus Family CS348_06900 PF00905 Penicillin binding protein transpeptidase domain CS348_06905 PF00384 Molybdopterin oxidoreductase CS348_06905 PF01568 Molydopterin dinucleotide binding domain CS348_06905 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CS348_06910 PF12800 4Fe-4S binding domain CS348_06910 PF13247 4Fe-4S dicluster domain CS348_06925 PF00334 Nucleoside diphosphate kinase CS348_06930 PF04055 Radical SAM superfamily CS348_06940 PF13464 Domain of unknown function (DUF4115) CS348_06945 PF04551 GcpE protein CS348_06950 PF03129 Anticodon binding domain CS348_06950 PF13393 Histidyl-tRNA synthetase CS348_06955 PF09976 Tetratricopeptide repeat-like domain CS348_06960 PF13360 PQQ-like domain CS348_06965 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CS348_06965 PF01926 50S ribosome-binding GTPase CS348_06970 PF07191 zinc-ribbons CS348_06975 PF01476 LysM domain CS348_06975 PF02368 Bacterial Ig-like domain (group 2) CS348_06975 PF07979 Intimin C-type lectin domain CS348_06975 PF11924 Inverse autotransporter, beta-domain CS348_06975 PF02369 Bacterial Ig-like domain (group 1) CS348_06995 PF03400 IS1 transposase CS348_07000 PF03797 Autotransporter beta-domain CS348_07005 PF13742 OB-fold nucleic acid binding domain CS348_07005 PF02601 Exonuclease VII, large subunit CS348_07010 PF00478 IMP dehydrogenase / GMP reductase domain CS348_07010 PF00571 CBS domain CS348_07015 PF00117 Glutamine amidotransferase class-I CS348_07015 PF02540 NAD synthase CS348_07015 PF00958 GMP synthase C terminal domain CS348_07035 PF17358 Family of unknown function (DUF5384) CS348_07040 PF05433 Glycine zipper 2TM domain CS348_07045 PF11119 Protein of unknown function (DUF2633) CS348_07055 PF05231 MASE1 CS348_07055 PF00563 EAL domain CS348_07060 PF02541 Ppx/GppA phosphatase family CS348_07065 PF13090 Polyphosphate kinase C-terminal domain 2 CS348_07065 PF17941 Polyphosphate kinase C-terminal domain 1 CS348_07065 PF13089 Polyphosphate kinase N-terminal domain CS348_07065 PF02503 Polyphosphate kinase middle domain CS348_07070 PF00551 Formyl transferase CS348_07075 PF00586 AIR synthase related protein, N-terminal domain CS348_07075 PF02769 AIR synthase related protein, C-terminal domain CS348_07085 PF00860 Permease family CS348_07090 PF00308 Bacterial dnaA protein CS348_07095 PF03960 ArsC family CS348_07100 PF01435 Peptidase family M48 CS348_07105 PF01594 AI-2E family transporter CS348_07110 PF13556 PucR C-terminal helix-turn-helix domain CS348_07110 PF17853 GGDEF-like domain CS348_07110 PF05651 Putative sugar diacid recognition CS348_07115 PF02447 GntP family permease CS348_07120 PF02595 Glycerate kinase family CS348_07125 PF00578 AhpC/TSA family CS348_07130 PF01842 ACT domain CS348_07135 PF00701 Dihydrodipicolinate synthetase family CS348_07140 PF06804 NlpB/DapX lipoprotein CS348_07145 PF01259 SAICAR synthetase CS348_07150 PF04228 Putative neutral zinc metallopeptidase CS348_07155 PF05127 Helicase CS348_07155 PF13718 GNAT acetyltransferase 2 CS348_07155 PF08351 Domain of unknown function (DUF1726) CS348_07155 PF17176 tRNA-binding domain CS348_07160 PF13980 Uncharacterised protein family (UPF0370) CS348_07165 PF01546 Peptidase family M20/M25/M40 CS348_07165 PF07687 Peptidase dimerisation domain CS348_07170 PF03960 ArsC family CS348_07175 PF00873 AcrB/AcrD/AcrF family CS348_07180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_07180 PF07730 Histidine kinase CS348_07180 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CS348_07180 PF00672 HAMP domain CS348_07185 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CS348_07185 PF07992 Pyridine nucleotide-disulphide oxidoreductase CS348_07185 PF13247 4Fe-4S dicluster domain CS348_07190 PF00144 Beta-lactamase CS348_07195 PF00293 NUDIX domain CS348_07200 PF06674 Protein of unknown function (DUF1176) CS348_07210 PF00456 Transketolase, thiamine diphosphate binding domain CS348_07210 PF02780 Transketolase, C-terminal domain CS348_07210 PF02779 Transketolase, pyrimidine binding domain CS348_07215 PF00923 Transaldolase/Fructose-6-phosphate aldolase CS348_07225 PF03949 Malic enzyme, NAD binding domain CS348_07225 PF00390 Malic enzyme, N-terminal domain CS348_07225 PF01515 Phosphate acetyl/butaryl transferase CS348_07230 PF00936 BMC domain CS348_07235 PF10662 Ethanolamine utilisation - propanediol utilisation CS348_07240 PF06249 Ethanolamine utilisation protein EutQ CS348_07245 PF01923 Cobalamin adenosyltransferase CS348_07250 PF01515 Phosphate acetyl/butaryl transferase CS348_07255 PF00936 BMC domain CS348_07260 PF03319 Ethanolamine utilisation protein EutN/carboxysome CS348_07265 PF00171 Aldehyde dehydrogenase family CS348_07275 PF00465 Iron-containing alcohol dehydrogenase CS348_07280 PF04346 Ethanolamine utilisation protein, EutH CS348_07285 PF06277 Ethanolamine utilisation protein EutA CS348_07290 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CS348_07295 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CS348_07300 PF00936 BMC domain CS348_07305 PF00936 BMC domain CS348_07305 PF16365 Ethanolamine utilization protein EutK C-terminus CS348_07310 PF12833 Helix-turn-helix domain CS348_07315 PF01218 Coproporphyrinogen III oxidase CS348_07320 PF01520 N-acetylmuramoyl-L-alanine amidase CS348_07325 PF00583 Acetyltransferase (GNAT) family CS348_07330 PF11143 Protein of unknown function (DUF2919) CS348_07335 PF06572 Protein of unknown function (DUF1131) CS348_07340 PF04261 Dyp-type peroxidase family CS348_07355 PF00528 Binding-protein-dependent transport system inner membrane component CS348_07360 PF00528 Binding-protein-dependent transport system inner membrane component CS348_07365 PF00005 ABC transporter CS348_07370 PF00291 Pyridoxal-phosphate dependent enzyme CS348_07375 PF17263 Family of unknown function (DUF5329) CS348_07380 PF00117 Glutamine amidotransferase class-I CS348_07385 PF00155 Aminotransferase class I and II CS348_07385 PF00392 Bacterial regulatory proteins, gntR family CS348_07390 PF08543 Phosphomethylpyrimidine kinase CS348_07400 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CS348_07405 PF02896 PEP-utilising enzyme, TIM barrel domain CS348_07405 PF00391 PEP-utilising enzyme, mobile domain CS348_07405 PF05524 PEP-utilising enzyme, N-terminal CS348_07410 PF00381 PTS HPr component phosphorylation site CS348_07415 PF00291 Pyridoxal-phosphate dependent enzyme CS348_07430 PF04354 ZipA, C-terminal FtsZ-binding domain CS348_07435 PF03120 NAD-dependent DNA ligase OB-fold domain CS348_07435 PF00533 BRCA1 C Terminus (BRCT) domain CS348_07435 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CS348_07435 PF12826 Helix-hairpin-helix motif CS348_07435 PF01653 NAD-dependent DNA ligase adenylation domain CS348_07440 PF12843 Putative quorum-sensing-regulated virulence factor CS348_07445 PF13593 SBF-like CPA transporter family (DUF4137) CS348_07450 PF03466 LysR substrate binding domain CS348_07450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_07455 PF03502 Nucleoside-specific channel-forming protein, Tsx CS348_07460 PF01048 Phosphorylase superfamily CS348_07465 PF03825 Nucleoside H+ symporter CS348_07475 PF03466 LysR substrate binding domain CS348_07475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_07495 PF00749 tRNA synthetases class I (E and Q), catalytic domain CS348_07500 PF07037 Putative transcription regulator (DUF1323) CS348_07505 PF07037 Putative transcription regulator (DUF1323) CS348_07525 PF00563 EAL domain CS348_07525 PF05231 MASE1 CS348_07530 PF07670 Nucleoside recognition CS348_07530 PF01773 Na+ dependent nucleoside transporter N-terminus CS348_07530 PF07662 Na+ dependent nucleoside transporter C-terminus CS348_07535 PF01566 Natural resistance-associated macrophage protein CS348_07565 PF10124 Mu-like prophage major head subunit gpT CS348_07585 PF10697 Protein of unknown function (DUF2502) CS348_07590 PF00248 Aldo/keto reductase family CS348_07595 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CS348_07595 PF00205 Thiamine pyrophosphate enzyme, central domain CS348_07595 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CS348_07600 PF00654 Voltage gated chloride channel CS348_07605 PF02685 Glucokinase CS348_07610 PF00155 Aminotransferase class I and II CS348_07615 PF03279 Bacterial lipid A biosynthesis acyltransferase CS348_07620 PF10810 Protein of unknown function (DUF2545) CS348_07630 PF07690 Major Facilitator Superfamily CS348_07645 PF00512 His Kinase A (phospho-acceptor) domain CS348_07645 PF00672 HAMP domain CS348_07645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_07650 PF00072 Response regulator receiver domain CS348_07650 PF02954 Bacterial regulatory protein, Fis family CS348_07650 PF14532 Sigma-54 interaction domain CS348_07655 PF01278 Omptin family CS348_07665 PF01226 Formate/nitrite transporter CS348_07670 PF04333 MlaA lipoprotein CS348_07675 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CS348_07685 PF04175 Protein of unknown function (DUF406) CS348_07690 PF00108 Thiolase, N-terminal domain CS348_07690 PF02803 Thiolase, C-terminal domain CS348_07695 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CS348_07695 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CS348_07695 PF00378 Enoyl-CoA hydratase/isomerase CS348_07700 PF00300 Histidine phosphatase superfamily (branch 1) CS348_07705 PF01713 Smr domain CS348_07710 PF05175 Methyltransferase small domain CS348_07715 PF01264 Chorismate synthase CS348_07725 PF01925 Sulfite exporter TauE/SafE CS348_07730 PF04315 Elongation factor P hydroxylase CS348_07735 PF08891 YfcL protein CS348_07740 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CS348_07740 PF01266 FAD dependent oxidoreductase CS348_07745 PF02801 Beta-ketoacyl synthase, C-terminal domain CS348_07745 PF00109 Beta-ketoacyl synthase, N-terminal domain CS348_07750 PF02517 CPBP intramembrane metalloprotease CS348_07765 PF13693 Winged helix-turn-helix DNA-binding CS348_07775 PF07690 Major Facilitator Superfamily CS348_07785 PF11890 Domain of unknown function (DUF3410) CS348_07785 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CS348_07785 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CS348_07790 PF01118 Semialdehyde dehydrogenase, NAD binding domain CS348_07790 PF02774 Semialdehyde dehydrogenase, dimerisation domain CS348_07795 PF01416 tRNA pseudouridine synthase CS348_07800 PF09335 SNARE associated Golgi protein CS348_07805 PF17848 Acetyl-coA carboxylase zinc finger domain CS348_07805 PF01039 Carboxyl transferase domain CS348_07810 PF08245 Mur ligase middle domain CS348_07810 PF02875 Mur ligase family, glutamate ligase domain CS348_07815 PF05036 Sporulation related domain CS348_07820 PF02674 Colicin V production protein CS348_07825 PF00156 Phosphoribosyl transferase domain CS348_07840 PF13520 Amino acid permease CS348_07845 PF01168 Alanine racemase, N-terminal domain CS348_07850 PF00324 Amino acid permease CS348_07855 PF02441 Flavoprotein CS348_07865 PF00497 Bacterial extracellular solute-binding proteins, family 3 CS348_07870 PF00497 Bacterial extracellular solute-binding proteins, family 3 CS348_07875 PF00528 Binding-protein-dependent transport system inner membrane component CS348_07880 PF00528 Binding-protein-dependent transport system inner membrane component CS348_07885 PF00005 ABC transporter CS348_07890 PF08338 Domain of unknown function (DUF1731) CS348_07890 PF01370 NAD dependent epimerase/dehydratase family CS348_07895 PF00043 Glutathione S-transferase, C-terminal domain CS348_07895 PF02798 Glutathione S-transferase, N-terminal domain CS348_07900 PF02798 Glutathione S-transferase, N-terminal domain CS348_07900 PF14834 Glutathione S-transferase, C-terminal domain CS348_07905 PF12850 Calcineurin-like phosphoesterase superfamily domain CS348_07910 PF00293 NUDIX domain CS348_07915 PF00356 Bacterial regulatory proteins, lacI family CS348_07925 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CS348_07935 PF03611 PTS system sugar-specific permease component CS348_07940 PF00456 Transketolase, thiamine diphosphate binding domain CS348_07945 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CS348_07945 PF02780 Transketolase, C-terminal domain CS348_07945 PF02779 Transketolase, pyrimidine binding domain CS348_07950 PF03606 C4-dicarboxylate anaerobic carrier CS348_07955 PF07085 DRTGG domain CS348_07955 PF01515 Phosphate acetyl/butaryl transferase CS348_07960 PF00871 Acetokinase family CS348_07965 PF04217 Protein of unknown function, DUF412 CS348_07970 PF03887 YfbU domain CS348_07975 PF13419 Haloacid dehalogenase-like hydrolase CS348_07980 PF03600 Citrate transporter CS348_07980 PF02080 TrkA-C domain CS348_07990 PF00155 Aminotransferase class I and II CS348_08000 PF03466 LysR substrate binding domain CS348_08000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_08010 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CS348_08015 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CS348_08020 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CS348_08020 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CS348_08030 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CS348_08030 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CS348_08030 PF10531 SLBB domain CS348_08035 PF01568 Molydopterin dinucleotide binding domain CS348_08035 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CS348_08035 PF00384 Molybdopterin oxidoreductase CS348_08035 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CS348_08040 PF00146 NADH dehydrogenase CS348_08045 PF12838 4Fe-4S dicluster domain CS348_08050 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CS348_08055 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CS348_08060 PF00361 Proton-conducting membrane transporter CS348_08060 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CS348_08065 PF00361 Proton-conducting membrane transporter CS348_08070 PF00361 Proton-conducting membrane transporter CS348_08075 PF01584 CheW-like domain CS348_08075 PF00072 Response regulator receiver domain CS348_08080 PF12706 Beta-lactamase superfamily domain CS348_08085 PF13673 Acetyltransferase (GNAT) domain CS348_08090 PF05957 Bacterial protein of unknown function (DUF883) CS348_08095 PF00425 chorismate binding enzyme CS348_08100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CS348_08100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CS348_08100 PF16582 Middle domain of thiamine pyrophosphate CS348_08105 PF12697 Alpha/beta hydrolase family CS348_08110 PF00378 Enoyl-CoA hydratase/isomerase CS348_08115 PF13378 Enolase C-terminal domain-like CS348_08120 PF00501 AMP-binding enzyme CS348_08120 PF13193 AMP-binding enzyme C-terminal domain CS348_08135 PF00892 EamA-like transporter family CS348_08140 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CS348_08145 PF01522 Polysaccharide deacetylase CS348_08150 PF01370 NAD dependent epimerase/dehydratase family CS348_08150 PF02911 Formyl transferase, C-terminal domain CS348_08150 PF00551 Formyl transferase CS348_08155 PF00535 Glycosyl transferase family 2 CS348_08160 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CS348_08165 PF00300 Histidine phosphatase superfamily (branch 1) CS348_08170 PF00293 NUDIX domain CS348_08175 PF07437 YfaZ precursor CS348_08180 PF00994 Probable molybdopterin binding domain CS348_08185 PF09339 IclR helix-turn-helix domain CS348_08185 PF01614 Bacterial transcriptional regulator CS348_08190 PF13378 Enolase C-terminal domain-like CS348_08190 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CS348_08195 PF07690 Major Facilitator Superfamily CS348_08200 PF03328 HpcH/HpaI aldolase/citrate lyase family CS348_08205 PF00994 Probable molybdopterin binding domain CS348_08225 PF13183 4Fe-4S dicluster domain CS348_08225 PF02754 Cysteine-rich domain CS348_08230 PF00890 FAD binding domain CS348_08235 PF01266 FAD dependent oxidoreductase CS348_08235 PF04324 BFD-like [2Fe-2S] binding domain CS348_08240 PF07690 Major Facilitator Superfamily CS348_08245 PF03009 Glycerophosphoryl diester phosphodiesterase family CS348_08250 PF03466 LysR substrate binding domain CS348_08250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_08255 PF07690 Major Facilitator Superfamily CS348_08260 PF00111 2Fe-2S iron-sulfur cluster binding domain CS348_08265 PF00268 Ribonucleotide reductase, small chain CS348_08270 PF03477 ATP cone domain CS348_08270 PF00317 Ribonucleotide reductase, all-alpha domain CS348_08270 PF02867 Ribonucleotide reductase, barrel domain CS348_08285 PF07690 Major Facilitator Superfamily CS348_08290 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CS348_08290 PF13378 Enolase C-terminal domain-like CS348_08300 PF03989 DNA gyrase C-terminal domain, beta-propeller CS348_08300 PF00521 DNA gyrase/topoisomerase IV, subunit A CS348_08305 PF00072 Response regulator receiver domain CS348_08305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_08305 PF00512 His Kinase A (phospho-acceptor) domain CS348_08305 PF09456 RcsC Alpha-Beta-Loop (ABL) CS348_08310 PF00196 Bacterial regulatory proteins, luxR family CS348_08310 PF00072 Response regulator receiver domain CS348_08315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_08315 PF01627 Hpt domain CS348_08315 PF16359 RcsD-ABL domain CS348_08325 PF00267 Gram-negative porin CS348_08330 PF02424 ApbE family CS348_08335 PF12833 Helix-turn-helix domain CS348_08335 PF02805 Metal binding domain of Ada CS348_08335 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CS348_08335 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CS348_08340 PF13532 2OG-Fe(II) oxygenase superfamily CS348_08345 PF00005 ABC transporter CS348_08350 PF03974 Ecotin CS348_08355 PF13187 4Fe-4S dicluster domain CS348_08355 PF00037 4Fe-4S binding domain CS348_08355 PF12800 4Fe-4S binding domain CS348_08360 PF03927 NapD protein CS348_08365 PF00384 Molybdopterin oxidoreductase CS348_08365 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CS348_08365 PF01568 Molydopterin dinucleotide binding domain CS348_08370 PF12800 4Fe-4S binding domain CS348_08370 PF12838 4Fe-4S dicluster domain CS348_08375 PF12801 4Fe-4S binding domain CS348_08375 PF13237 4Fe-4S dicluster domain CS348_08385 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CS348_08390 PF03264 NapC/NirT cytochrome c family, N-terminal region CS348_08395 PF00005 ABC transporter CS348_08400 PF03379 CcmB protein CS348_08405 PF01578 Cytochrome C assembly protein CS348_08410 PF04995 Heme exporter protein D (CcmD) CS348_08415 PF03100 CcmE CS348_08420 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CS348_08420 PF01578 Cytochrome C assembly protein CS348_08425 PF08534 Redoxin CS348_08430 PF03918 Cytochrome C biogenesis protein CS348_08435 PF00196 Bacterial regulatory proteins, luxR family CS348_08435 PF00072 Response regulator receiver domain CS348_08470 PF11893 Domain of unknown function (DUF3413) CS348_08470 PF00884 Sulfatase CS348_08475 PF07208 Protein of unknown function (DUF1414) CS348_08480 PF04245 37-kD nucleoid-associated bacterial protein CS348_08485 PF01386 Ribosomal L25p family CS348_08490 PF04851 Type III restriction enzyme, res subunit CS348_08490 PF00271 Helicase conserved C-terminal domain CS348_08495 PF01479 S4 domain CS348_08495 PF00849 RNA pseudouridylate synthase CS348_08500 PF07690 Major Facilitator Superfamily CS348_08510 PF13989 YejG-like protein CS348_08515 PF00005 ABC transporter CS348_08515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CS348_08520 PF00528 Binding-protein-dependent transport system inner membrane component CS348_08520 PF12911 N-terminal TM domain of oligopeptide transport permease C CS348_08525 PF00528 Binding-protein-dependent transport system inner membrane component CS348_08530 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CS348_08535 PF12792 CSS motif domain associated with EAL CS348_08535 PF00563 EAL domain CS348_08545 PF00877 NlpC/P60 family CS348_08555 PF01569 PAP2 superfamily CS348_08560 PF02492 CobW/HypB/UreG, nucleotide-binding domain CS348_08560 PF07683 Cobalamin synthesis protein cobW C-terminal domain CS348_08565 PF08207 Elongation factor P (EF-P) KOW-like domain CS348_08565 PF09285 Elongation factor P, C-terminal CS348_08565 PF01132 Elongation factor P (EF-P) OB domain CS348_08575 PF03692 Putative zinc- or iron-chelating domain CS348_08590 PF07690 Major Facilitator Superfamily CS348_08595 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CS348_08595 PF00381 PTS HPr component phosphorylation site CS348_08600 PF00294 pfkB family carbohydrate kinase CS348_08605 PF02378 Phosphotransferase system, EIIC CS348_08605 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CS348_08610 PF01261 Xylose isomerase-like TIM barrel CS348_08615 PF03601 Conserved hypothetical protein 698 CS348_08620 PF03466 LysR substrate binding domain CS348_08620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_08625 PF00324 Amino acid permease CS348_08635 PF00593 TonB dependent receptor CS348_08635 PF07715 TonB-dependent Receptor Plug Domain CS348_08640 PF07690 Major Facilitator Superfamily CS348_08645 PF18429 Domain of unknown function (DUF5609) CS348_08650 PF03313 Serine dehydratase alpha chain CS348_08650 PF03315 Serine dehydratase beta chain CS348_08660 PF00756 Putative esterase CS348_08670 PF01227 GTP cyclohydrolase I CS348_08675 PF04235 Protein of unknown function (DUF418) CS348_08680 PF00356 Bacterial regulatory proteins, lacI family CS348_08685 PF13407 Periplasmic binding protein domain CS348_08690 PF00005 ABC transporter CS348_08695 PF02653 Branched-chain amino acid transport system / permease component CS348_08700 PF01180 Dihydroorotate dehydrogenase CS348_08705 PF07992 Pyridine nucleotide-disulphide oxidoreductase CS348_08705 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CS348_08715 PF10808 Protein of unknown function (DUF2542) CS348_08720 PF02698 DUF218 domain CS348_08725 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CS348_08725 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CS348_08730 PF04172 LrgB-like family CS348_08735 PF03788 LrgA family CS348_08740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_08740 PF03466 LysR substrate binding domain CS348_08745 PF07690 Major Facilitator Superfamily CS348_08750 PF07883 Cupin domain CS348_08755 PF01557 Fumarylacetoacetate (FAA) hydrolase family CS348_08760 PF14497 Glutathione S-transferase, C-terminal domain CS348_08760 PF02798 Glutathione S-transferase, N-terminal domain CS348_08765 PF01494 FAD binding domain CS348_08770 PF01207 Dihydrouridine synthase (Dus) CS348_08780 PF02321 Outer membrane efflux protein CS348_08790 PF09335 SNARE associated Golgi protein CS348_08795 PF04893 Yip1 domain CS348_08805 PF00768 D-alanyl-D-alanine carboxypeptidase CS348_08810 PF09330 D-lactate dehydrogenase, membrane binding CS348_08810 PF01565 FAD binding domain CS348_08815 PF14310 Fibronectin type III-like domain CS348_08815 PF01915 Glycosyl hydrolase family 3 C-terminal domain CS348_08815 PF00933 Glycosyl hydrolase family 3 N terminal domain CS348_08820 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CS348_08825 PF00528 Binding-protein-dependent transport system inner membrane component CS348_08830 PF00005 ABC transporter CS348_08835 PF00528 Binding-protein-dependent transport system inner membrane component CS348_08845 PF13411 MerR HTH family regulatory protein CS348_08850 PF07694 5TMR of 5TMR-LYT CS348_08850 PF06580 Histidine kinase CS348_08855 PF04397 LytTr DNA-binding domain CS348_08855 PF00072 Response regulator receiver domain CS348_08860 PF07308 Protein of unknown function (DUF1456) CS348_08870 PF06998 Protein of unknown function (DUF1307) CS348_08875 PF01588 Putative tRNA binding domain CS348_08875 PF09334 tRNA synthetases class I (M) CS348_08880 PF10609 NUBPL iron-transfer P-loop NTPase CS348_08895 PF02753 Pili assembly chaperone PapD, C-terminal domain CS348_08895 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CS348_08900 PF13953 PapC C-terminal domain CS348_08900 PF13954 PapC N-terminal domain CS348_08900 PF00577 Outer membrane usher protein CS348_08910 PF11776 Nickel/cobalt transporter regulator CS348_08915 PF02110 Hydroxyethylthiazole kinase family CS348_08920 PF08543 Phosphomethylpyrimidine kinase CS348_08925 PF00392 Bacterial regulatory proteins, gntR family CS348_08925 PF07702 UTRA domain CS348_08930 PF00294 pfkB family carbohydrate kinase CS348_08935 PF03747 ADP-ribosylglycohydrolase CS348_08940 PF03825 Nucleoside H+ symporter CS348_08945 PF01791 DeoC/LacD family aldolase CS348_08950 PF00781 Diacylglycerol kinase catalytic domain CS348_08960 PF05932 Tir chaperone protein (CesT) family CS348_08995 PF00072 Response regulator receiver domain CS348_08995 PF00486 Transcriptional regulatory protein, C terminal CS348_09000 PF00512 His Kinase A (phospho-acceptor) domain CS348_09000 PF00672 HAMP domain CS348_09000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_09005 PF07690 Major Facilitator Superfamily CS348_09010 PF00873 AcrB/AcrD/AcrF family CS348_09015 PF00873 AcrB/AcrD/AcrF family CS348_09020 PF13533 Biotin-lipoyl like CS348_09025 PF00012 Hsp70 protein CS348_09035 PF06029 AlkA N-terminal domain CS348_09035 PF00730 HhH-GPD superfamily base excision DNA repair protein CS348_09040 PF05231 MASE1 CS348_09040 PF08448 PAS fold CS348_09040 PF13426 PAS domain CS348_09040 PF00990 Diguanylate cyclase, GGDEF domain CS348_09040 PF00563 EAL domain CS348_09040 PF08447 PAS fold CS348_09045 PF00485 Phosphoribulokinase / Uridine kinase family CS348_09050 PF00692 dUTPase CS348_09055 PF05170 AsmA family CS348_09060 PF00571 CBS domain CS348_09060 PF03471 Transporter associated domain CS348_09060 PF03741 Integral membrane protein TerC family CS348_09070 PF02563 Polysaccharide biosynthesis/export protein CS348_09070 PF10531 SLBB domain CS348_09070 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CS348_09075 PF01451 Low molecular weight phosphotyrosine protein phosphatase CS348_09080 PF13614 AAA domain CS348_09080 PF02706 Chain length determinant protein CS348_09080 PF13807 G-rich domain on putative tyrosine kinase CS348_09085 PF00535 Glycosyl transferase family 2 CS348_09090 PF00132 Bacterial transferase hexapeptide (six repeats) CS348_09095 PF00534 Glycosyl transferases group 1 CS348_09095 PF13439 Glycosyltransferase Family 4 CS348_09105 PF00535 Glycosyl transferase family 2 CS348_09110 PF00132 Bacterial transferase hexapeptide (six repeats) CS348_09115 PF16363 GDP-mannose 4,6 dehydratase CS348_09120 PF01370 NAD dependent epimerase/dehydratase family CS348_09125 PF00293 NUDIX domain CS348_09130 PF13579 Glycosyl transferase 4-like domain CS348_09130 PF00534 Glycosyl transferases group 1 CS348_09135 PF00483 Nucleotidyl transferase CS348_09135 PF01050 Mannose-6-phosphate isomerase CS348_09140 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CS348_09140 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CS348_09140 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CS348_09140 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CS348_09145 PF02397 Bacterial sugar transferase CS348_09155 PF04230 Polysaccharide pyruvyl transferase CS348_09160 PF13439 Glycosyltransferase Family 4 CS348_09160 PF00534 Glycosyl transferases group 1 CS348_09170 PF01370 NAD dependent epimerase/dehydratase family CS348_09175 PF00483 Nucleotidyl transferase CS348_09180 PF01943 Polysaccharide biosynthesis protein CS348_09185 PF00535 Glycosyl transferase family 2 CS348_09195 PF13439 Glycosyltransferase Family 4 CS348_09195 PF00534 Glycosyl transferases group 1 CS348_09200 PF16363 GDP-mannose 4,6 dehydratase CS348_09210 PF16363 GDP-mannose 4,6 dehydratase CS348_09215 PF01370 NAD dependent epimerase/dehydratase family CS348_09220 PF00293 NUDIX domain CS348_09225 PF01050 Mannose-6-phosphate isomerase CS348_09225 PF00483 Nucleotidyl transferase CS348_09230 PF00535 Glycosyl transferase family 2 CS348_09235 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CS348_09235 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CS348_09235 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CS348_09235 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CS348_09240 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CS348_09240 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CS348_09250 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CS348_09250 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CS348_09255 PF02706 Chain length determinant protein CS348_09260 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CS348_09260 PF01502 Phosphoribosyl-AMP cyclohydrolase CS348_09265 PF00977 Histidine biosynthesis protein CS348_09270 PF00977 Histidine biosynthesis protein CS348_09275 PF00117 Glutamine amidotransferase class-I CS348_09280 PF00475 Imidazoleglycerol-phosphate dehydratase CS348_09285 PF00155 Aminotransferase class I and II CS348_09290 PF00815 Histidinol dehydrogenase CS348_09295 PF01634 ATP phosphoribosyltransferase CS348_09295 PF08029 HisG, C-terminal domain CS348_09305 PF01370 NAD dependent epimerase/dehydratase family CS348_09310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_09310 PF03466 LysR substrate binding domain CS348_09315 PF13520 Amino acid permease CS348_09320 PF08411 Exonuclease C-terminal CS348_09320 PF00929 Exonuclease CS348_09325 PF13979 SopA-like catalytic domain CS348_09325 PF13981 SopA-like central domain CS348_09325 PF13599 Pentapeptide repeats (9 copies) CS348_09340 PF00384 Molybdopterin oxidoreductase CS348_09340 PF01568 Molydopterin dinucleotide binding domain CS348_09340 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CS348_09345 PF12800 4Fe-4S binding domain CS348_09345 PF13247 4Fe-4S dicluster domain CS348_09350 PF01292 Prokaryotic cytochrome b561 CS348_09355 PF00768 D-alanyl-D-alanine carboxypeptidase CS348_09355 PF07943 Penicillin-binding protein 5, C-terminal domain CS348_09360 PF06445 GyrI-like small molecule binding domain CS348_09365 PF04632 Fusaric acid resistance protein family CS348_09370 PF04363 Protein of unknown function (DUF496) CS348_09375 PF00288 GHMP kinases N terminal domain CS348_09380 PF00871 Acetokinase family CS348_09385 PF10662 Ethanolamine utilisation - propanediol utilisation CS348_09390 PF00936 BMC domain CS348_09400 PF10531 SLBB domain CS348_09400 PF13375 RnfC Barrel sandwich hybrid domain CS348_09400 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CS348_09400 PF13237 4Fe-4S dicluster domain CS348_09405 PF00465 Iron-containing alcohol dehydrogenase CS348_09410 PF00171 Aldehyde dehydrogenase family CS348_09415 PF01923 Cobalamin adenosyltransferase CS348_09420 PF03319 Ethanolamine utilisation protein EutN/carboxysome CS348_09430 PF06130 Phosphate propanoyltransferase CS348_09435 PF00936 BMC domain CS348_09440 PF00936 BMC domain CS348_09450 PF08841 Diol dehydratase reactivase ATPase-like domain CS348_09450 PF18427 DD-reactivating factor swiveling domain CS348_09455 PF02287 Dehydratase small subunit CS348_09460 PF02288 Dehydratase medium subunit CS348_09465 PF02286 Dehydratase large subunit CS348_09470 PF00936 BMC domain CS348_09475 PF00936 BMC domain CS348_09480 PF00230 Major intrinsic protein CS348_09485 PF10114 Sensory domain found in PocR CS348_09485 PF12833 Helix-turn-helix domain CS348_09490 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CS348_09490 PF07685 CobB/CobQ-like glutamine amidotransferase domain CS348_09495 PF03186 CobD/Cbib protein CS348_09500 PF02570 Precorrin-8X methylmutase CS348_09505 PF01888 CbiD CS348_09510 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CS348_09515 PF05175 Methyltransferase small domain CS348_09520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CS348_09525 PF11760 Cobalamin synthesis G N-terminal CS348_09525 PF11761 Cobalamin biosynthesis central region CS348_09525 PF01890 Cobalamin synthesis G C-terminus CS348_09530 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CS348_09535 PF02571 Precorrin-6x reductase CbiJ/CobK CS348_09540 PF06180 Cobalt chelatase (CbiK) CS348_09545 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CS348_09550 PF01891 Cobalt uptake substrate-specific transmembrane region CS348_09555 PF02553 Cobalt transport protein component CbiN CS348_09560 PF02361 Cobalt transport protein CS348_09565 PF00005 ABC transporter CS348_09570 PF07685 CobB/CobQ-like glutamine amidotransferase domain CS348_09575 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CS348_09580 PF02654 Cobalamin-5-phosphate synthase CS348_09585 PF02277 Phosphoribosyltransferase CS348_09590 PF17969 L,D-transpeptidase C-terminal domain CS348_09590 PF03734 L,D-transpeptidase catalytic domain CS348_09605 PF01276 Orn/Lys/Arg decarboxylase, major domain CS348_09605 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CS348_09620 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CS348_09620 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CS348_09625 PF03466 LysR substrate binding domain CS348_09625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_09635 PF01022 Bacterial regulatory protein, arsR family CS348_09640 PF01451 Low molecular weight phosphotyrosine protein phosphatase CS348_09645 PF06953 Arsenical resistance operon trans-acting repressor ArsD CS348_09650 PF02374 Anion-transporting ATPase CS348_09655 PF01758 Sodium Bile acid symporter family CS348_09675 PF01554 MatE CS348_09705 PF01048 Phosphorylase superfamily CS348_09705 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CS348_09730 PF06167 Glucose-regulated metallo-peptidase M90 CS348_09750 PF00717 Peptidase S24-like CS348_09755 PF11799 impB/mucB/samB family C-terminal domain CS348_09755 PF00817 impB/mucB/samB family CS348_09755 PF13438 Domain of unknown function (DUF4113) CS348_09760 PF00313 'Cold-shock' DNA-binding domain CS348_09770 PF00267 Gram-negative porin CS348_09780 PF01966 HD domain CS348_09785 PF18284 DNA methylase N-terminal domain CS348_09785 PF00145 C-5 cytosine-specific DNA methylase CS348_09790 PF03852 DNA mismatch endonuclease Vsr CS348_09795 PF00892 EamA-like transporter family CS348_09800 PF05661 Protein of unknown function (DUF808) CS348_09805 PF09926 Uncharacterized small protein (DUF2158) CS348_09810 PF17151 Periplasmic sensor domain CS348_09810 PF00990 Diguanylate cyclase, GGDEF domain CS348_09820 PF10733 Protein of unknown function (DUF2525) CS348_09825 PF10781 Dextransucrase DSRB CS348_09830 PF00196 Bacterial regulatory proteins, luxR family CS348_09835 PF01311 Bacterial export proteins, family 1 CS348_09840 PF01313 Bacterial export proteins, family 3 CS348_09845 PF00813 FliP family CS348_09850 PF04347 Flagellar biosynthesis protein, FliO CS348_09855 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CS348_09855 PF16973 Flagellar motor switch protein FliN N-terminal CS348_09860 PF02154 Flagellar motor switch protein FliM CS348_09860 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CS348_09865 PF03748 Flagellar basal body-associated protein FliL CS348_09870 PF02120 Flagellar hook-length control protein FliK CS348_09875 PF02050 Flagellar FliJ protein CS348_09880 PF18269 T3SS EscN ATPase C-terminal domain CS348_09880 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CS348_09885 PF02108 Flagellar assembly protein FliH CS348_09890 PF01706 FliG C-terminal domain CS348_09890 PF14841 FliG middle domain CS348_09890 PF14842 FliG N-terminal domain CS348_09895 PF01514 Secretory protein of YscJ/FliF family CS348_09895 PF08345 Flagellar M-ring protein C-terminal CS348_09900 PF02049 Flagellar hook-basal body complex protein FliE CS348_09910 PF01206 Sulfurtransferase TusA CS348_09915 PF04143 Sulphur transport CS348_09920 PF13987 YedD-like protein CS348_09925 PF00128 Alpha amylase, catalytic domain CS348_09925 PF02806 Alpha amylase, C-terminal all-beta domain CS348_09930 PF05400 Flagellar protein FliT CS348_09935 PF02561 Flagellar protein FliS CS348_09940 PF07195 Flagellar hook-associated protein 2 C-terminus CS348_09940 PF02465 Flagellar hook-associated protein 2 N-terminus CS348_09940 PF07196 Flagellin hook IN motif CS348_09945 PF00669 Bacterial flagellin N-terminal helical region CS348_09945 PF00700 Bacterial flagellin C-terminal helical region CS348_09945 PF08884 Flagellin D3 domain CS348_09955 PF04542 Sigma-70 region 2 CS348_09955 PF04539 Sigma-70 region 3 CS348_09955 PF04545 Sigma-70, region 4 CS348_09960 PF02899 Phage integrase, N-terminal SAM-like domain CS348_09970 PF00291 Pyridoxal-phosphate dependent enzyme CS348_09985 PF00196 Bacterial regulatory proteins, luxR family CS348_09985 PF03472 Autoinducer binding domain CS348_09990 PF10769 Protein of unknown function (DUF2594) CS348_10000 PF00072 Response regulator receiver domain CS348_10000 PF00196 Bacterial regulatory proteins, luxR family CS348_10005 PF02151 UvrB/uvrC motif CS348_10005 PF01541 GIY-YIG catalytic domain CS348_10005 PF08459 UvrC Helix-hairpin-helix N-terminal CS348_10010 PF01066 CDP-alcohol phosphatidyltransferase CS348_10045 PF03695 Uncharacterised protein family (UPF0149) CS348_10045 PF02810 SEC-C motif CS348_10050 PF03222 Tryptophan/tyrosine permease family CS348_10055 PF10678 Protein of unknown function (DUF2492) CS348_10060 PF00210 Ferritin-like domain CS348_10065 PF13992 YecR-like lipoprotein CS348_10075 PF00210 Ferritin-like domain CS348_10090 PF02358 Trehalose-phosphatase CS348_10095 PF00982 Glycosyltransferase family 20 CS348_10100 PF00582 Universal stress protein family CS348_10110 PF05247 Flagellar transcriptional activator (FlhD) CS348_10115 PF05280 Flagellar transcriptional activator (FlhC) CS348_10120 PF01618 MotA/TolQ/ExbB proton channel family CS348_10125 PF00691 OmpA family CS348_10125 PF13677 Membrane MotB of proton-channel complex MotA/MotB CS348_10130 PF01584 CheW-like domain CS348_10130 PF09078 CheY binding CS348_10130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_10130 PF01627 Hpt domain CS348_10130 PF02895 Signal transducing histidine kinase, homodimeric domain CS348_10135 PF01584 CheW-like domain CS348_10140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CS348_10140 PF02203 Tar ligand binding domain homologue CS348_10140 PF00672 HAMP domain CS348_10145 PF01739 CheR methyltransferase, SAM binding domain CS348_10145 PF03705 CheR methyltransferase, all-alpha domain CS348_10150 PF01339 CheB methylesterase CS348_10150 PF00072 Response regulator receiver domain CS348_10155 PF00072 Response regulator receiver domain CS348_10160 PF04344 Chemotaxis phosphatase, CheZ CS348_10165 PF01312 FlhB HrpN YscU SpaS Family CS348_10170 PF00771 FHIPEP family CS348_10175 PF06366 Flagellar protein FlhE CS348_10180 PF07470 Glycosyl Hydrolase Family 88 CS348_10185 PF00905 Penicillin binding protein transpeptidase domain CS348_10185 PF03717 Penicillin-binding Protein dimerisation domain CS348_10190 PF00750 tRNA synthetases class I (R) CS348_10190 PF05746 DALR anticodon binding domain CS348_10190 PF03485 Arginyl tRNA synthetase N terminal domain CS348_10195 PF06185 YecM protein CS348_10200 PF03932 CutC family CS348_10210 PF08003 Protein of unknown function (DUF1698) CS348_10215 PF13649 Methyltransferase domain CS348_10220 PF01124 MAPEG family CS348_10225 PF01904 Protein of unknown function DUF72 CS348_10230 PF00857 Isochorismatase family CS348_10235 PF02938 GAD domain CS348_10235 PF00152 tRNA synthetases class II (D, K and N) CS348_10235 PF01336 OB-fold nucleic acid binding domain CS348_10240 PF00293 NUDIX domain CS348_10245 PF01709 Transcriptional regulator CS348_10250 PF02075 Crossover junction endodeoxyribonuclease RuvC CS348_10255 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CS348_10265 PF01330 RuvA N terminal domain CS348_10265 PF07499 RuvA, C-terminal domain CS348_10270 PF17864 RuvB AAA lid domain CS348_10270 PF05491 RuvB C-terminal winged helix domain CS348_10270 PF05496 Holliday junction DNA helicase RuvB P-loop domain CS348_10275 PF00950 ABC 3 transport family CS348_10280 PF00005 ABC transporter CS348_10285 PF01297 Zinc-uptake complex component A periplasmic CS348_10290 PF08525 Opacity-associated protein A N-terminal motif CS348_10290 PF01551 Peptidase family M23 CS348_10290 PF01476 LysM domain CS348_10300 PF03279 Bacterial lipid A biosynthesis acyltransferase CS348_10305 PF02887 Pyruvate kinase, alpha/beta domain CS348_10305 PF00224 Pyruvate kinase, barrel domain CS348_10310 PF01380 SIS domain CS348_10310 PF01418 Helix-turn-helix domain, rpiR family CS348_10320 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CS348_10320 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CS348_10325 PF00920 Dehydratase family CS348_10330 PF01081 KDPG and KHG aldolase CS348_10335 PF02222 ATP-grasp domain CS348_10340 PF07130 YebG protein CS348_10345 PF13995 YebF-like protein CS348_10350 PF04391 Protein of unknown function (DUF533) CS348_10355 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CS348_10355 PF00326 Prolyl oligopeptidase family CS348_10360 PF00929 Exonuclease CS348_10365 PF00795 Carbon-nitrogen hydrolase CS348_10370 PF06440 DNA polymerase III, theta subunit CS348_10375 PF04234 CopC domain CS348_10380 PF05425 Copper resistance protein D CS348_10385 PF10709 Protein of unknown function (DUF2511) CS348_10410 PF10721 Protein of unknown function (DUF2514) CS348_10435 PF03335 Phage tail fibre repeat CS348_10435 PF07484 Phage Tail Collar Domain CS348_10445 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CS348_10460 PF02040 Arsenical pump membrane protein CS348_10485 PF00892 EamA-like transporter family CS348_10515 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CS348_10520 PF00583 Acetyltransferase (GNAT) family CS348_10530 PF07166 Protein of unknown function (DUF1398) CS348_10535 PF07487 SopE GEF domain CS348_10535 PF05364 Salmonella type III secretion SopE effector N-terminus CS348_10545 PF00149 Calcineurin-like phosphoesterase CS348_10550 PF07358 Protein of unknown function (DUF1482) CS348_10555 PF07351 Protein of unknown function (DUF1480) CS348_10560 PF01189 16S rRNA methyltransferase RsmB/F CS348_10560 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CS348_10560 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CS348_10565 PF02470 MlaD protein CS348_10570 PF04403 Paraquat-inducible protein A CS348_10575 PF13185 GAF domain CS348_10580 PF17516 ProQ C-terminal domain CS348_10580 PF04352 ProQ/FINO family CS348_10585 PF11818 C-terminal domain of tail specific protease (DUF3340) CS348_10585 PF03572 Peptidase family S41 CS348_10585 PF00595 PDZ domain CS348_10585 PF17804 Tail specific protease N-terminal domain CS348_10590 PF01435 Peptidase family M48 CS348_10595 PF07690 Major Facilitator Superfamily CS348_10600 PF01614 Bacterial transcriptional regulator CS348_10600 PF09339 IclR helix-turn-helix domain CS348_10605 PF13996 YobH-like protein CS348_10610 PF13998 MgrB protein CS348_10615 PF13974 YebO-like protein CS348_10620 PF10736 Protein of unknown function (DUF2627) CS348_10625 PF00313 'Cold-shock' DNA-binding domain CS348_10630 PF03717 Penicillin-binding Protein dimerisation domain CS348_10630 PF00905 Penicillin binding protein transpeptidase domain CS348_10635 PF13847 Methyltransferase domain CS348_10640 PF02659 Putative manganese efflux pump CS348_10650 PF06173 Protein of unknown function (DUF986) CS348_10655 PF03613 PTS system mannose/fructose/sorbose family IID component CS348_10660 PF03609 PTS system sorbose-specific iic component CS348_10665 PF03610 PTS system fructose IIA component CS348_10665 PF03830 PTS system sorbose subfamily IIB component CS348_10675 PF03741 Integral membrane protein TerC family CS348_10675 PF03471 Transporter associated domain CS348_10680 PF12792 CSS motif domain associated with EAL CS348_10680 PF00563 EAL domain CS348_10685 PF03315 Serine dehydratase beta chain CS348_10685 PF03313 Serine dehydratase alpha chain CS348_10690 PF00293 NUDIX domain CS348_10695 PF00425 chorismate binding enzyme CS348_10695 PF04715 Anthranilate synthase component I, N terminal region CS348_10700 PF03701 Uncharacterised protein family (UPF0181) CS348_10705 PF01042 Endoribonuclease L-PSP CS348_10710 PF13307 Helicase C-terminal domain CS348_10710 PF04851 Type III restriction enzyme, res subunit CS348_10715 PF00814 Glycoprotease family CS348_10720 PF03843 Outer membrane lipoprotein Slp family CS348_10730 PF00501 AMP-binding enzyme CS348_10730 PF13193 AMP-binding enzyme C-terminal domain CS348_10735 PF01612 3'-5' exonuclease CS348_10735 PF00570 HRDC domain CS348_10740 PF03776 Septum formation topological specificity factor MinE CS348_10745 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CS348_10750 PF05209 Septum formation inhibitor MinC, N-terminal domain CS348_10750 PF03775 Septum formation inhibitor MinC, C-terminal domain CS348_10755 PF05166 YcgL domain CS348_10760 PF01557 Fumarylacetoacetate (FAA) hydrolase family CS348_10765 PF03692 Putative zinc- or iron-chelating domain CS348_10775 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system CS348_10785 PF02600 Disulfide bond formation protein DsbB CS348_10790 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CS348_10795 PF00392 Bacterial regulatory proteins, gntR family CS348_10795 PF07840 FadR C-terminal domain CS348_10800 PF04293 SpoVR like protein CS348_10805 PF01266 FAD dependent oxidoreductase CS348_10810 PF01168 Alanine racemase, N-terminal domain CS348_10810 PF00842 Alanine racemase, C-terminal domain CS348_10815 PF00999 Sodium/hydrogen exchanger family CS348_10815 PF02080 TrkA-C domain CS348_10815 PF03471 Transporter associated domain CS348_10820 PF17676 LD-carboxypeptidase C-terminal domain CS348_10820 PF02016 LD-carboxypeptidase N-terminal domain CS348_10825 PF01464 Transglycosylase SLT domain CS348_10830 PF07238 PilZ domain CS348_10830 PF07317 Flagellar regulator YcgR CS348_10835 PF04226 Transglycosylase associated protein CS348_10840 PF01204 Trehalase CS348_10845 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CS348_10845 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CS348_10850 PF08173 Membrane bound YbgT-like protein CS348_10855 PF02322 Cytochrome bd terminal oxidase subunit II CS348_10860 PF01654 Cytochrome bd terminal oxidase subunit I CS348_10865 PF04809 HupH hydrogenase expression protein, C-terminal conserved region CS348_10870 PF07449 Hydrogenase-1 expression protein HyaE CS348_10875 PF01750 Hydrogenase maturation protease CS348_10880 PF01292 Prokaryotic cytochrome b561 CS348_10885 PF00374 Nickel-dependent hydrogenase CS348_10890 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CS348_10890 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CS348_10905 PF06071 Protein of unknown function (DUF933) CS348_10905 PF01926 50S ribosome-binding GTPase CS348_10910 PF01195 Peptidyl-tRNA hydrolase CS348_10915 PF10762 Protein of unknown function (DUF2583) CS348_10920 PF00916 Sulfate permease family CS348_10920 PF01740 STAS domain CS348_10925 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CS348_10925 PF14572 Phosphoribosyl synthetase-associated domain CS348_10930 PF08544 GHMP kinases C terminal CS348_10930 PF00288 GHMP kinases N terminal domain CS348_10935 PF03550 Outer membrane lipoprotein LolB CS348_10940 PF01488 Shikimate / quinate 5-dehydrogenase CS348_10940 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CS348_10940 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CS348_10945 PF00472 RF-1 domain CS348_10945 PF03462 PCRF domain CS348_10950 PF17827 PrmC N-terminal domain CS348_10950 PF13847 Methyltransferase domain CS348_10955 PF04247 Invasion gene expression up-regulator, SirB CS348_10960 PF13369 Transglutaminase-like superfamily CS348_10965 PF00793 DAHP synthetase I family CS348_10970 PF01699 Sodium/calcium exchanger protein CS348_10975 PF06150 ChaB CS348_10980 PF02635 DsrE/DsrF-like family CS348_10985 PF11924 Inverse autotransporter, beta-domain CS348_10990 PF00072 Response regulator receiver domain CS348_10990 PF00196 Bacterial regulatory proteins, luxR family CS348_10995 PF07730 Histidine kinase CS348_10995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_10995 PF00672 HAMP domain CS348_10995 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CS348_11005 PF07690 Major Facilitator Superfamily CS348_11010 PF14710 Respiratory nitrate reductase alpha N-terminal CS348_11010 PF00384 Molybdopterin oxidoreductase CS348_11010 PF01568 Molydopterin dinucleotide binding domain CS348_11015 PF13247 4Fe-4S dicluster domain CS348_11015 PF14711 Respiratory nitrate reductase beta C-terminal CS348_11020 PF02613 Nitrate reductase delta subunit CS348_11025 PF02665 Nitrate reductase gamma subunit CS348_11065 PF00551 Formyl transferase CS348_11065 PF01842 ACT domain CS348_11070 PF02810 SEC-C motif CS348_11075 PF01734 Patatin-like phospholipase CS348_11080 PF00072 Response regulator receiver domain CS348_11085 PF00483 Nucleotidyl transferase CS348_11090 PF00816 H-NS histone family CS348_11095 PF00265 Thymidine kinase CS348_11100 PF00465 Iron-containing alcohol dehydrogenase CS348_11100 PF00171 Aldehyde dehydrogenase family CS348_11105 PF01914 MarC family integral membrane protein CS348_11115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CS348_11120 PF00528 Binding-protein-dependent transport system inner membrane component CS348_11125 PF12911 N-terminal TM domain of oligopeptide transport permease C CS348_11125 PF00528 Binding-protein-dependent transport system inner membrane component CS348_11130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CS348_11130 PF00005 ABC transporter CS348_11135 PF00005 ABC transporter CS348_11135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CS348_11140 PF00027 Cyclic nucleotide-binding domain CS348_11140 PF00520 Ion transport protein CS348_11145 PF04269 Protein of unknown function, DUF440 CS348_11150 PF13091 PLD-like domain CS348_11150 PF13396 Phospholipase_D-nuclease N-terminal CS348_11160 PF03795 YCII-related domain CS348_11165 PF03544 Gram-negative bacterial TonB protein C-terminal CS348_11170 PF03061 Thioesterase superfamily CS348_11175 PF04279 Intracellular septation protein A CS348_11185 PF03692 Putative zinc- or iron-chelating domain CS348_11195 PF03922 OmpW family CS348_11200 PF05067 Manganese containing catalase CS348_11205 PF05974 Domain of unknown function (DUF892) CS348_11210 PF05974 Domain of unknown function (DUF892) CS348_11215 PF10685 Stress-induced bacterial acidophilic repeat motif CS348_11220 PF00290 Tryptophan synthase alpha chain CS348_11225 PF00291 Pyridoxal-phosphate dependent enzyme CS348_11230 PF00218 Indole-3-glycerol phosphate synthase CS348_11230 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CS348_11235 PF02885 Glycosyl transferase family, helical bundle domain CS348_11235 PF00591 Glycosyl transferase family, a/b domain CS348_11235 PF00117 Glutamine amidotransferase class-I CS348_11240 PF00425 chorismate binding enzyme CS348_11240 PF04715 Anthranilate synthase component I, N terminal region CS348_11245 PF08255 Trp-operon Leader Peptide CS348_11250 PF02811 PHP domain CS348_11255 PF01300 Telomere recombination CS348_11260 PF00849 RNA pseudouridylate synthase CS348_11260 PF01479 S4 domain CS348_11265 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CS348_11270 PF00106 short chain dehydrogenase CS348_11275 PF08496 Peptidase family S49 N-terminal CS348_11275 PF01343 Peptidase family S49 CS348_11280 PF10692 Protein of unknown function (DUF2498) CS348_11290 PF01751 Toprim domain CS348_11290 PF08272 Topoisomerase I zinc-ribbon-like CS348_11290 PF01396 Topoisomerase DNA binding C4 zinc finger CS348_11290 PF01131 DNA topoisomerase CS348_11300 PF03466 LysR substrate binding domain CS348_11300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_11320 PF00330 Aconitase family (aconitate hydratase) CS348_11320 PF00694 Aconitase C-terminal domain CS348_11325 PF00925 GTP cyclohydrolase II CS348_11330 PF01569 PAP2 superfamily CS348_11340 PF06305 Lipopolysaccharide assembly protein A domain CS348_11345 PF18073 Rubredoxin metal binding domain CS348_11350 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CS348_11355 PF01253 Translation initiation factor SUI1 CS348_11360 PF05433 Glycine zipper 2TM domain CS348_11365 PF08220 DeoR-like helix-turn-helix domain CS348_11365 PF00455 DeoR C terminal sensor domain CS348_11375 PF13426 PAS domain CS348_11375 PF00990 Diguanylate cyclase, GGDEF domain CS348_11375 PF00563 EAL domain CS348_11385 PF00575 S1 RNA binding domain CS348_11385 PF17876 Cold shock domain CS348_11385 PF08206 Ribonuclease B OB domain CS348_11385 PF00773 RNB domain CS348_11420 PF00005 ABC transporter CS348_11425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CS348_11425 PF00005 ABC transporter CS348_11430 PF12911 N-terminal TM domain of oligopeptide transport permease C CS348_11430 PF00528 Binding-protein-dependent transport system inner membrane component CS348_11470 PF00239 Resolvase, N terminal domain CS348_11470 PF02796 Helix-turn-helix domain of resolvase CS348_11475 PF00528 Binding-protein-dependent transport system inner membrane component CS348_11480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CS348_11485 PF00158 Sigma-54 interaction domain CS348_11485 PF02954 Bacterial regulatory protein, Fis family CS348_11490 PF04012 PspA/IM30 family CS348_11495 PF06667 Phage shock protein B CS348_11500 PF04024 PspC domain CS348_11505 PF09584 Phage shock protein PspD (Phageshock_PspD) CS348_11510 PF00581 Rhodanese-like domain CS348_11515 PF04317 YcjX-like family, DUF463 CS348_11520 PF05128 Domain of unknown function (DUF697) CS348_11525 PF00158 Sigma-54 interaction domain CS348_11525 PF18024 Helix-turn-helix domain CS348_11530 PF08534 Redoxin CS348_11535 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CS348_11535 PF13378 Enolase C-terminal domain-like CS348_11540 PF00246 Zinc carboxypeptidase CS348_11545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CS348_11555 PF03466 LysR substrate binding domain CS348_11555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_11560 PF00248 Aldo/keto reductase family CS348_11570 PF00440 Bacterial regulatory proteins, tetR family CS348_11585 PF06445 GyrI-like small molecule binding domain CS348_11585 PF12833 Helix-turn-helix domain CS348_11610 PF08534 Redoxin CS348_11630 PF00924 Mechanosensitive ion channel CS348_11635 PF10749 Protein of unknown function (DUF2534) CS348_11640 PF00582 Universal stress protein family CS348_11645 PF00027 Cyclic nucleotide-binding domain CS348_11645 PF13545 Crp-like helix-turn-helix domain CS348_11650 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CS348_11650 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CS348_11655 PF01713 Smr domain CS348_11665 PF02203 Tar ligand binding domain homologue CS348_11665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CS348_11665 PF00672 HAMP domain CS348_11670 PF01544 CorA-like Mg2+ transporter protein CS348_11680 PF03880 DbpA RNA binding domain CS348_11680 PF00271 Helicase conserved C-terminal domain CS348_11680 PF00270 DEAD/DEAH box helicase CS348_11685 PF01171 PP-loop family CS348_11700 PF00893 Small Multidrug Resistance protein CS348_11705 PF00582 Universal stress protein family CS348_11715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CS348_11715 PF10371 Domain of unknown function CS348_11715 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CS348_11715 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CS348_11715 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CS348_11725 PF03891 Domain of unknown function (DUF333) CS348_11730 PF03724 META domain CS348_11735 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CS348_11735 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CS348_11740 PF11739 Dicarboxylate transport CS348_11745 PF13617 YnbE-like lipoprotein CS348_11750 PF07027 Protein of unknown function (DUF1318) CS348_11760 PF02525 Flavodoxin-like fold CS348_11765 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CS348_11765 PF00271 Helicase conserved C-terminal domain CS348_11765 PF04408 Helicase associated domain (HA2) CS348_11765 PF00270 DEAD/DEAH box helicase CS348_11765 PF11898 Domain of unknown function (DUF3418) CS348_11770 PF02698 DUF218 domain CS348_11775 PF01292 Prokaryotic cytochrome b561 CS348_11780 PF08242 Methyltransferase domain CS348_11790 PF00528 Binding-protein-dependent transport system inner membrane component CS348_11800 PF00528 Binding-protein-dependent transport system inner membrane component CS348_11805 PF00497 Bacterial extracellular solute-binding proteins, family 3 CS348_11815 PF06767 Sif protein CS348_11815 PF00657 GDSL-like Lipase/Acylhydrolase CS348_11830 PF02583 Metal-sensitive transcriptional repressor CS348_11835 PF08240 Alcohol dehydrogenase GroES-like domain CS348_11835 PF00107 Zinc-binding dehydrogenase CS348_11845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CS348_11845 PF00672 HAMP domain CS348_11845 PF02203 Tar ligand binding domain homologue CS348_11850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_11850 PF03466 LysR substrate binding domain CS348_11855 PF07063 Domain of unknown function (DUF1338) CS348_11860 PF00135 Carboxylesterase family CS348_11865 PF04349 Periplasmic glucan biosynthesis protein, MdoG CS348_11870 PF04264 YceI-like domain CS348_11875 PF01070 FMN-dependent dehydrogenase CS348_11880 PF00583 Acetyltransferase (GNAT) family CS348_11885 PF00455 DeoR C terminal sensor domain CS348_11885 PF08220 DeoR-like helix-turn-helix domain CS348_11890 PF00834 Ribulose-phosphate 3 epimerase family CS348_11895 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CS348_11900 PF03437 BtpA family CS348_11905 PF03611 PTS system sugar-specific permease component CS348_11910 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CS348_11915 PF05343 M42 glutamyl aminopeptidase CS348_11920 PF13302 Acetyltransferase (GNAT) domain CS348_11925 PF18836 Beta solenoid repeat from YDCK CS348_11930 PF03595 Voltage-dependent anion channel CS348_11935 PF03848 Tellurite resistance protein TehB CS348_11940 PF11769 Protein of unknown function (DUF3313) CS348_11945 PF03594 Benzoate membrane transport protein CS348_11950 PF01381 Helix-turn-helix CS348_11950 PF07883 Cupin domain CS348_11955 PF12392 Collagenase CS348_11955 PF01136 Peptidase family U32 CS348_11960 PF10829 Protein of unknown function (DUF2554) CS348_11965 PF06767 Sif protein CS348_11980 PF01427 D-ala-D-ala dipeptidase CS348_11985 PF00155 Aminotransferase class I and II CS348_11985 PF00392 Bacterial regulatory proteins, gntR family CS348_11990 PF00171 Aldehyde dehydrogenase family CS348_12000 PF10753 Toxin GhoT_OrtT CS348_12020 PF10735 Protein of unknown function (DUF2526) CS348_12025 PF04657 Putative inner membrane exporter, YdcZ CS348_12035 PF16884 N-terminal domain of oxidoreductase CS348_12035 PF00107 Zinc-binding dehydrogenase CS348_12040 PF00392 Bacterial regulatory proteins, gntR family CS348_12040 PF07729 FCD domain CS348_12045 PF00593 TonB dependent receptor CS348_12045 PF07715 TonB-dependent Receptor Plug Domain CS348_12055 PF06004 Bacterial protein of unknown function (DUF903) CS348_12060 PF00324 Amino acid permease CS348_12080 PF00797 N-acetyltransferase CS348_12085 PF02567 Phenazine biosynthesis-like protein CS348_12090 PF02665 Nitrate reductase gamma subunit CS348_12095 PF02613 Nitrate reductase delta subunit CS348_12100 PF14711 Respiratory nitrate reductase beta C-terminal CS348_12100 PF13247 4Fe-4S dicluster domain CS348_12105 PF01568 Molydopterin dinucleotide binding domain CS348_12105 PF00384 Molybdopterin oxidoreductase CS348_12105 PF14710 Respiratory nitrate reductase alpha N-terminal CS348_12110 PF07690 Major Facilitator Superfamily CS348_12120 PF07690 Major Facilitator Superfamily CS348_12130 PF00267 Gram-negative porin CS348_12140 PF00892 EamA-like transporter family CS348_12145 PF00384 Molybdopterin oxidoreductase CS348_12145 PF01568 Molydopterin dinucleotide binding domain CS348_12145 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CS348_12150 PF00384 Molybdopterin oxidoreductase CS348_12150 PF01568 Molydopterin dinucleotide binding domain CS348_12150 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CS348_12155 PF09163 Formate dehydrogenase N, transmembrane CS348_12155 PF13247 4Fe-4S dicluster domain CS348_12155 PF12800 4Fe-4S binding domain CS348_12160 PF01292 Prokaryotic cytochrome b561 CS348_12165 PF08240 Alcohol dehydrogenase GroES-like domain CS348_12165 PF00107 Zinc-binding dehydrogenase CS348_12175 PF08136 30S ribosomal protein subunit S22 family CS348_12180 PF10684 Putative biofilm-dependent modulation protein CS348_12185 PF02566 OsmC-like protein CS348_12190 PF06109 Haemolysin E (HlyE) CS348_12205 PF06411 HdeA/HdeB family CS348_12215 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CS348_12215 PF11941 Domain of unknown function (DUF3459) CS348_12215 PF00128 Alpha amylase, catalytic domain CS348_12220 PF00128 Alpha amylase, catalytic domain CS348_12225 PF00128 Alpha amylase, catalytic domain CS348_12225 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CS348_12230 PF00155 Aminotransferase class I and II CS348_12235 PF03553 Na+/H+ antiporter family CS348_12240 PF00356 Bacterial regulatory proteins, lacI family CS348_12245 PF03060 Nitronate monooxygenase CS348_12250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_12250 PF03466 LysR substrate binding domain CS348_12290 PF01042 Endoribonuclease L-PSP CS348_12295 PF02547 Queuosine biosynthesis protein CS348_12305 PF01494 FAD binding domain CS348_12310 PF07690 Major Facilitator Superfamily CS348_12320 PF07690 Major Facilitator Superfamily CS348_12325 PF08240 Alcohol dehydrogenase GroES-like domain CS348_12325 PF00107 Zinc-binding dehydrogenase CS348_12330 PF07729 FCD domain CS348_12330 PF00392 Bacterial regulatory proteins, gntR family CS348_12340 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CS348_12340 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CS348_12345 PF00374 Nickel-dependent hydrogenase CS348_12350 PF01292 Prokaryotic cytochrome b561 CS348_12355 PF01750 Hydrogenase maturation protease CS348_12360 PF01455 HupF/HypC family CS348_12370 PF04809 HupH hydrogenase expression protein, C-terminal conserved region CS348_12380 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CS348_12385 PF00267 Gram-negative porin CS348_12395 PF01062 Bestrophin, RFP-TM, chloride channel CS348_12400 PF13811 Domain of unknown function (DUF4186) CS348_12405 PF04960 Glutaminase CS348_12410 PF00171 Aldehyde dehydrogenase family CS348_12415 PF03466 LysR substrate binding domain CS348_12415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_12420 PF07690 Major Facilitator Superfamily CS348_12425 PF01914 MarC family integral membrane protein CS348_12430 PF01047 MarR family CS348_12435 PF12833 Helix-turn-helix domain CS348_12440 PF13999 MarB protein CS348_12445 PF00892 EamA-like transporter family CS348_12450 PF07690 Major Facilitator Superfamily CS348_12460 PF04076 Bacterial OB fold (BOF) protein CS348_12465 PF02464 Competence-damaged protein CS348_12470 PF10685 Stress-induced bacterial acidophilic repeat motif CS348_12480 PF01432 Peptidase family M3 CS348_12485 PF00106 short chain dehydrogenase CS348_12490 PF07729 FCD domain CS348_12490 PF00392 Bacterial regulatory proteins, gntR family CS348_12495 PF14001 YdfZ protein CS348_12500 PF08125 Mannitol dehydrogenase C-terminal domain CS348_12500 PF01232 Mannitol dehydrogenase Rossmann domain CS348_12505 PF00083 Sugar (and other) transporter CS348_12505 PF07690 Major Facilitator Superfamily CS348_12510 PF08240 Alcohol dehydrogenase GroES-like domain CS348_12510 PF00107 Zinc-binding dehydrogenase CS348_12515 PF13378 Enolase C-terminal domain-like CS348_12515 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CS348_12520 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CS348_12525 PF06932 Protein of unknown function (DUF1283) CS348_12530 PF13302 Acetyltransferase (GNAT) domain CS348_12535 PF06788 Uncharacterised protein family (UPF0257) CS348_12540 PF06649 Protein of unknown function (DUF1161) CS348_12550 PF00384 Molybdopterin oxidoreductase CS348_12550 PF01568 Molydopterin dinucleotide binding domain CS348_12550 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CS348_12555 PF12800 4Fe-4S binding domain CS348_12555 PF13247 4Fe-4S dicluster domain CS348_12560 PF04976 DMSO reductase anchor subunit (DmsC) CS348_12565 PF02613 Nitrate reductase delta subunit CS348_12570 PF00528 Binding-protein-dependent transport system inner membrane component CS348_12575 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CS348_12580 PF00528 Binding-protein-dependent transport system inner membrane component CS348_12585 PF00571 CBS domain CS348_12585 PF00005 ABC transporter CS348_12590 PF00654 Voltage gated chloride channel CS348_12600 PF00480 ROK family CS348_12610 PF03466 LysR substrate binding domain CS348_12610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_12615 PF07690 Major Facilitator Superfamily CS348_12630 PF00089 Trypsin CS348_12635 PF00893 Small Multidrug Resistance protein CS348_12640 PF00893 Small Multidrug Resistance protein CS348_12650 PF01594 AI-2E family transporter CS348_12655 PF02233 NAD(P) transhydrogenase beta subunit CS348_12660 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CS348_12660 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CS348_12660 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CS348_12665 PF07338 Protein of unknown function (DUF1471) CS348_12670 PF13520 Amino acid permease CS348_12675 PF06942 GlpM protein CS348_12680 PF00072 Response regulator receiver domain CS348_12680 PF00486 Transcriptional regulatory protein, C terminal CS348_12690 PF00267 Gram-negative porin CS348_12695 PF13382 Adenine deaminase C-terminal domain CS348_12695 PF01979 Amidohydrolase family CS348_12700 PF00512 His Kinase A (phospho-acceptor) domain CS348_12700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_12700 PF00672 HAMP domain CS348_12705 PF05472 DNA replication terminus site-binding protein (Ter protein) CS348_12710 PF10415 Fumarase C C-terminus CS348_12710 PF00206 Lyase CS348_12715 PF05683 Fumarase C-terminus CS348_12715 PF05681 Fumarate hydratase (Fumerase) CS348_12720 PF01238 Phosphomannose isomerase type I CS348_12725 PF06097 Bacterial protein of unknown function (DUF945) CS348_12730 PF00356 Bacterial regulatory proteins, lacI family CS348_12730 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CS348_12735 PF02378 Phosphotransferase system, EIIC CS348_12735 PF00367 phosphotransferase system, EIIB CS348_12740 PF00155 Aminotransferase class I and II CS348_12745 PF00962 Adenosine/AMP deaminase CS348_12750 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CS348_12750 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CS348_12760 PF05321 Haemolysin expression modulating protein CS348_12765 PF10754 Protein of unknown function (DUF2569) CS348_12770 PF02508 Rnf-Nqr subunit, membrane protein CS348_12775 PF04060 Putative Fe-S cluster CS348_12780 PF10531 SLBB domain CS348_12780 PF12838 4Fe-4S dicluster domain CS348_12780 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CS348_12780 PF13375 RnfC Barrel sandwich hybrid domain CS348_12785 PF03116 NQR2, RnfD, RnfE family CS348_12790 PF04205 FMN-binding domain CS348_12795 PF02508 Rnf-Nqr subunit, membrane protein CS348_12800 PF00730 HhH-GPD superfamily base excision DNA repair protein CS348_12800 PF00633 Helix-hairpin-helix motif CS348_12800 PF10576 Iron-sulfur binding domain of endonuclease III CS348_12805 PF00854 POT family CS348_12810 PF00043 Glutathione S-transferase, C-terminal domain CS348_12810 PF02798 Glutathione S-transferase, N-terminal domain CS348_12815 PF08543 Phosphomethylpyrimidine kinase CS348_12820 PF00579 tRNA synthetases class I (W and Y) CS348_12820 PF01479 S4 domain CS348_12825 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CS348_12825 PF01243 Pyridoxamine 5'-phosphate oxidase CS348_12830 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CS348_12835 PF03702 Anhydro-N-acetylmuramic acid kinase CS348_12840 PF05433 Glycine zipper 2TM domain CS348_12845 PF01047 MarR family CS348_12850 PF07869 Protein of unknown function (DUF1656) CS348_12855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CS348_12855 PF00529 HlyD membrane-fusion protein of T1SS CS348_12860 PF04632 Fusaric acid resistance protein family CS348_12865 PF00080 Copper/zinc superoxide dismutase (SODC) CS348_12870 PF00248 Aldo/keto reductase family CS348_12875 PF06945 Protein of unknown function (DUF1289) CS348_12880 PF00440 Bacterial regulatory proteins, tetR family CS348_12880 PF16925 Tetracyclin repressor-like, C-terminal domain CS348_12885 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CS348_12890 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CS348_12895 PF00929 Exonuclease CS348_12900 PF00462 Glutaredoxin CS348_12905 PF00877 NlpC/P60 family CS348_12910 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CS348_12910 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CS348_12925 PF00356 Bacterial regulatory proteins, lacI family CS348_12930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_12930 PF03466 LysR substrate binding domain CS348_12935 PF07690 Major Facilitator Superfamily CS348_12945 PF00677 Lumazine binding domain CS348_12950 PF01554 MatE CS348_12965 PF01312 FlhB HrpN YscU SpaS Family CS348_12970 PF01311 Bacterial export proteins, family 1 CS348_12975 PF01313 Bacterial export proteins, family 3 CS348_12980 PF00813 FliP family CS348_12985 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CS348_13000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CS348_13000 PF18269 T3SS EscN ATPase C-terminal domain CS348_13005 PF00771 FHIPEP family CS348_13015 PF07201 HrpJ-like domain CS348_13030 PF01514 Secretory protein of YscJ/FliF family CS348_13070 PF05802 Enterobacterial EspB protein CS348_13075 PF04888 Secretion system effector C (SseC) like family CS348_13085 PF03433 EspA-like secreted protein CS348_13120 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CS348_13120 PF00072 Response regulator receiver domain CS348_13120 PF01627 Hpt domain CS348_13120 PF00512 His Kinase A (phospho-acceptor) domain CS348_13120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_13120 PF00672 HAMP domain CS348_13125 PF00196 Bacterial regulatory proteins, luxR family CS348_13125 PF00072 Response regulator receiver domain CS348_13130 PF13411 MerR HTH family regulatory protein CS348_13135 PF08349 Protein of unknown function (DUF1722) CS348_13140 PF10965 Protein of unknown function (DUF2767) CS348_13145 PF00196 Bacterial regulatory proteins, luxR family CS348_13145 PF00072 Response regulator receiver domain CS348_13150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_13150 PF00512 His Kinase A (phospho-acceptor) domain CS348_13155 PF13247 4Fe-4S dicluster domain CS348_13160 PF03916 Polysulphide reductase, NrfD CS348_13165 PF01568 Molydopterin dinucleotide binding domain CS348_13165 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CS348_13165 PF00384 Molybdopterin oxidoreductase CS348_13170 PF00294 pfkB family carbohydrate kinase CS348_13180 PF00561 alpha/beta hydrolase fold CS348_13185 PF00324 Amino acid permease CS348_13190 PF02887 Pyruvate kinase, alpha/beta domain CS348_13190 PF00224 Pyruvate kinase, barrel domain CS348_13195 PF04728 Lipoprotein leucine-zipper CS348_13200 PF04728 Lipoprotein leucine-zipper CS348_13205 PF03734 L,D-transpeptidase catalytic domain CS348_13205 PF17969 L,D-transpeptidase C-terminal domain CS348_13205 PF01476 LysM domain CS348_13210 PF02657 Fe-S metabolism associated domain CS348_13215 PF00266 Aminotransferase class-V CS348_13220 PF01458 Uncharacterized protein family (UPF0051) CS348_13225 PF00005 ABC transporter CS348_13230 PF01458 Uncharacterized protein family (UPF0051) CS348_13235 PF01521 Iron-sulphur cluster biosynthesis CS348_13245 PF15930 Domain of unknown function CS348_13250 PF03061 Thioesterase superfamily CS348_13255 PF02913 FAD linked oxidases, C-terminal domain CS348_13255 PF13183 4Fe-4S dicluster domain CS348_13255 PF01565 FAD binding domain CS348_13260 PF01594 AI-2E family transporter CS348_13270 PF08965 Domain of unknown function (DUF1870) CS348_13275 PF07690 Major Facilitator Superfamily CS348_13280 PF07690 Major Facilitator Superfamily CS348_13285 PF08501 Shikimate dehydrogenase substrate binding domain CS348_13285 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CS348_13290 PF01487 Type I 3-dehydroquinase CS348_13295 PF01144 Coenzyme A transferase CS348_13300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CS348_13300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CS348_13300 PF02770 Acyl-CoA dehydrogenase, middle domain CS348_13305 PF02311 AraC-like ligand binding domain CS348_13305 PF12833 Helix-turn-helix domain CS348_13310 PF01012 Electron transfer flavoprotein domain CS348_13315 PF01012 Electron transfer flavoprotein domain CS348_13315 PF00766 Electron transfer flavoprotein FAD-binding domain CS348_13320 PF01494 FAD binding domain CS348_13330 PF13193 AMP-binding enzyme C-terminal domain CS348_13330 PF00501 AMP-binding enzyme CS348_13335 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CS348_13335 PF00391 PEP-utilising enzyme, mobile domain CS348_13335 PF02896 PEP-utilising enzyme, TIM barrel domain CS348_13340 PF03618 Kinase/pyrophosphorylase CS348_13345 PF00793 DAHP synthetase I family CS348_13350 PF10636 Hemin uptake protein hemP CS348_13355 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CS348_13360 PF00563 EAL domain CS348_13365 PF00877 NlpC/P60 family CS348_13370 PF00005 ABC transporter CS348_13375 PF00255 Glutathione peroxidase CS348_13380 PF01032 FecCD transport family CS348_13390 PF02899 Phage integrase, N-terminal SAM-like domain CS348_13390 PF00589 Phage integrase family CS348_13440 PF02086 D12 class N6 adenine-specific DNA methyltransferase CS348_13455 PF05840 Bacteriophage replication gene A protein (GPA) CS348_13530 PF03245 Bacteriophage Rz lysis protein CS348_13565 PF03335 Phage tail fibre repeat CS348_13565 PF08400 Prophage tail fibre N-terminal CS348_13565 PF07484 Phage Tail Collar Domain CS348_13605 PF04984 Phage tail sheath protein subtilisin-like domain CS348_13605 PF17482 Phage tail sheath C-terminal domain CS348_13620 PF01848 Hok/gef family CS348_13625 PF00216 Bacterial DNA-binding protein CS348_13630 PF03484 tRNA synthetase B5 domain CS348_13630 PF03147 Ferredoxin-fold anticodon binding domain CS348_13630 PF03483 B3/4 domain CS348_13630 PF01588 Putative tRNA binding domain CS348_13630 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CS348_13635 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CS348_13635 PF01409 tRNA synthetases class II core domain (F) CS348_13640 PF00453 Ribosomal protein L20 CS348_13645 PF01632 Ribosomal protein L35 CS348_13650 PF05198 Translation initiation factor IF-3, N-terminal domain CS348_13650 PF00707 Translation initiation factor IF-3, C-terminal domain CS348_13655 PF02824 TGS domain CS348_13655 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CS348_13655 PF03129 Anticodon binding domain CS348_13655 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CS348_13665 PF01223 DNA/RNA non-specific endonuclease CS348_13680 PF04338 Protein of unknown function, DUF481 CS348_13685 PF00294 pfkB family carbohydrate kinase CS348_13690 PF11080 Endoribonuclease GhoS CS348_13700 PF14002 YniB-like protein CS348_13705 PF13419 Haloacid dehalogenase-like hydrolase CS348_13710 PF04307 LexA-binding, inner membrane-associated putative hydrolase CS348_13720 PF10729 Cell division activator CedA CS348_13725 PF18011 C-terminal domain found in long catalases CS348_13725 PF00199 Catalase CS348_13725 PF06628 Catalase-related immune-responsive CS348_13730 PF04794 YdjC-like protein CS348_13735 PF02056 Family 4 glycosyl hydrolase CS348_13735 PF11975 Family 4 glycosyl hydrolase C-terminal domain CS348_13740 PF12833 Helix-turn-helix domain CS348_13740 PF07883 Cupin domain CS348_13745 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CS348_13750 PF02378 Phosphotransferase system, EIIC CS348_13755 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CS348_13765 PF04355 SmpA / OmlA family CS348_13770 PF02540 NAD synthase CS348_13780 PF07813 LTXXQ motif family protein CS348_13790 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CS348_13795 PF04996 Succinylarginine dihydrolase CS348_13800 PF00171 Aldehyde dehydrogenase family CS348_13805 PF04958 Arginine N-succinyltransferase beta subunit CS348_13810 PF00202 Aminotransferase class-III CS348_13820 PF03372 Endonuclease/Exonuclease/phosphatase family CS348_13825 PF00293 NUDIX domain CS348_13830 PF07383 Protein of unknown function (DUF1496) CS348_13835 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CS348_13835 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CS348_13840 PF01751 Toprim domain CS348_13840 PF01131 DNA topoisomerase CS348_13845 PF02769 AIR synthase related protein, C-terminal domain CS348_13845 PF00586 AIR synthase related protein, N-terminal domain CS348_13855 PF00881 Nitroreductase family CS348_13865 PF01343 Peptidase family S49 CS348_13870 PF17763 Glutaminase/Asparaginase C-terminal domain CS348_13870 PF00710 Asparaginase, N-terminal CS348_13875 PF00857 Isochorismatase family CS348_13880 PF07023 Protein of unknown function (DUF1315) CS348_13885 PF01641 SelR domain CS348_13890 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CS348_13890 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CS348_13900 PF01263 Aldose 1-epimerase CS348_13905 PF00248 Aldo/keto reductase family CS348_13910 PF04055 Radical SAM superfamily CS348_13910 PF13186 Iron-sulfur cluster-binding domain CS348_13915 PF06629 MltA-interacting protein MipA CS348_13920 PF08298 PrkA AAA domain CS348_13920 PF06798 PrkA serine protein kinase C-terminal domain CS348_13925 PF04285 Protein of unknown function (DUF444) CS348_13930 PF00990 Diguanylate cyclase, GGDEF domain CS348_13930 PF17155 Gammaproteobacterial periplasmic sensor domain CS348_13935 PF04073 Aminoacyl-tRNA editing domain CS348_13945 PF04284 Protein of unknown function (DUF441) CS348_13950 PF02311 AraC-like ligand binding domain CS348_13950 PF12833 Helix-turn-helix domain CS348_13955 PF07690 Major Facilitator Superfamily CS348_13960 PF04343 Protein of unknown function, DUF488 CS348_13970 PF03891 Domain of unknown function (DUF333) CS348_13980 PF04226 Transglycosylase associated protein CS348_13995 PF08956 Domain of unknown function (DUF1869) CS348_14000 PF09313 Domain of unknown function (DUF1971) CS348_14010 PF01810 LysE type translocator CS348_14015 PF01817 Chorismate mutase type II CS348_14035 PF09278 MerR, DNA binding CS348_14035 PF00376 MerR family regulatory protein CS348_14045 PF13427 Domain of unknown function (DUF4111) CS348_14045 PF01909 Nucleotidyltransferase domain CS348_14050 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CS348_14065 PF00924 Mechanosensitive ion channel CS348_14070 PF00005 ABC transporter CS348_14075 PF00005 ABC transporter CS348_14080 PF00528 Binding-protein-dependent transport system inner membrane component CS348_14080 PF12911 N-terminal TM domain of oligopeptide transport permease C CS348_14085 PF00528 Binding-protein-dependent transport system inner membrane component CS348_14090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CS348_14100 PF01292 Prokaryotic cytochrome b561 CS348_14115 PF00011 Hsp20/alpha crystallin family CS348_14140 PF06316 Enterobacterial Ail/Lom protein CS348_14160 PF00313 'Cold-shock' DNA-binding domain CS348_14165 PF00652 Ricin-type beta-trefoil lectin domain CS348_14170 PF06183 DinI-like family CS348_14180 PF03372 Endonuclease/Exonuclease/phosphatase family CS348_14215 PF00180 Isocitrate/isopropylmalate dehydrogenase CS348_14220 PF00849 RNA pseudouridylate synthase CS348_14230 PF00293 NUDIX domain CS348_14240 PF04356 Protein of unknown function (DUF489) CS348_14245 PF00206 Lyase CS348_14245 PF08328 Adenylosuccinate lyase C-terminal CS348_14250 PF00486 Transcriptional regulatory protein, C terminal CS348_14250 PF00072 Response regulator receiver domain CS348_14255 PF08918 PhoQ Sensor CS348_14255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_14260 PF08007 Cupin superfamily protein CS348_14270 PF07687 Peptidase dimerisation domain CS348_14270 PF01546 Peptidase family M20/M25/M40 CS348_14280 PF08402 TOBE domain CS348_14280 PF00005 ABC transporter CS348_14285 PF00528 Binding-protein-dependent transport system inner membrane component CS348_14290 PF06767 Sif protein CS348_14295 PF00528 Binding-protein-dependent transport system inner membrane component CS348_14300 PF13416 Bacterial extracellular solute-binding protein CS348_14305 PF02146 Sir2 family CS348_14310 PF00480 ROK family CS348_14315 PF02687 FtsX-like permease family CS348_14315 PF12704 MacB-like periplasmic core domain CS348_14320 PF00005 ABC transporter CS348_14325 PF02687 FtsX-like permease family CS348_14325 PF12704 MacB-like periplasmic core domain CS348_14330 PF00271 Helicase conserved C-terminal domain CS348_14330 PF00270 DEAD/DEAH box helicase CS348_14330 PF17757 UvrB interaction domain CS348_14330 PF02559 CarD-like/TRCF domain CS348_14330 PF03461 TRCF domain CS348_14340 PF07338 Protein of unknown function (DUF1471) CS348_14345 PF00440 Bacterial regulatory proteins, tetR family CS348_14350 PF05433 Glycine zipper 2TM domain CS348_14355 PF07992 Pyridine nucleotide-disulphide oxidoreductase CS348_14360 PF05728 Uncharacterised protein family (UPF0227) CS348_14365 PF00933 Glycosyl hydrolase family 3 N terminal domain CS348_14370 PF01636 Phosphotransferase enzyme family CS348_14375 PF13036 Peptidoglycan-synthase activator LpoB CS348_14380 PF07233 Protein of unknown function (DUF1425) CS348_14385 PF01230 HIT domain CS348_14390 PF00593 TonB dependent receptor CS348_14390 PF07715 TonB-dependent Receptor Plug Domain CS348_14395 PF02378 Phosphotransferase system, EIIC CS348_14395 PF00367 phosphotransferase system, EIIB CS348_14400 PF01026 TatD related DNase CS348_14405 PF09115 DNA polymerase III, delta subunit, C terminal CS348_14410 PF02223 Thymidylate kinase CS348_14415 PF02618 YceG-like family CS348_14420 PF01063 Amino-transferase class IV CS348_14425 PF00419 Fimbrial protein CS348_14430 PF02753 Pili assembly chaperone PapD, C-terminal domain CS348_14430 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CS348_14435 PF13953 PapC C-terminal domain CS348_14435 PF13954 PapC N-terminal domain CS348_14435 PF00577 Outer membrane usher protein CS348_14455 PF02801 Beta-ketoacyl synthase, C-terminal domain CS348_14455 PF00109 Beta-ketoacyl synthase, N-terminal domain CS348_14460 PF00550 Phosphopantetheine attachment site CS348_14470 PF00698 Acyl transferase domain CS348_14475 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CS348_14475 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CS348_14480 PF02504 Fatty acid synthesis protein CS348_14485 PF01783 Ribosomal L32p protein family CS348_14490 PF02620 Large ribosomal RNA subunit accumulation protein YceD CS348_14495 PF02545 Maf-like protein CS348_14510 PF00849 RNA pseudouridylate synthase CS348_14510 PF01479 S4 domain CS348_14520 PF00575 S1 RNA binding domain CS348_14520 PF10150 Ribonuclease E/G family CS348_14520 PF12111 Polyribonucleotide phosphorylase C terminal CS348_14525 PF00669 Bacterial flagellin N-terminal helical region CS348_14530 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CS348_14530 PF00460 Flagella basal body rod protein CS348_14535 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CS348_14535 PF10135 Rod binding protein CS348_14540 PF02119 Flagellar P-ring protein CS348_14545 PF02107 Flagellar L-ring protein CS348_14550 PF00460 Flagella basal body rod protein CS348_14550 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CS348_14555 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CS348_14555 PF00460 Flagella basal body rod protein CS348_14560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CS348_14560 PF00460 Flagella basal body rod protein CS348_14560 PF07559 Flagellar basal body protein FlaE CS348_14565 PF13860 FlgD Ig-like domain CS348_14565 PF13861 FlgD Tudor-like domain CS348_14565 PF03963 Flagellar hook capping protein - N-terminal region CS348_14570 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CS348_14570 PF00460 Flagella basal body rod protein CS348_14575 PF00460 Flagella basal body rod protein CS348_14585 PF13144 Chaperone for flagella basal body P-ring formation CS348_14590 PF04316 Anti-sigma-28 factor, FlgM CS348_14595 PF05130 FlgN protein CS348_14600 PF03023 Lipid II flippase MurJ CS348_14605 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CS348_14610 PF04337 Protein of unknown function, DUF480 CS348_14615 PF13302 Acetyltransferase (GNAT) domain CS348_14620 PF07690 Major Facilitator Superfamily CS348_14625 PF04399 Glutaredoxin 2, C terminal domain CS348_14625 PF13417 Glutathione S-transferase, N-terminal domain CS348_14630 PF07273 Protein of unknown function (DUF1439) CS348_14635 PF01979 Amidohydrolase family CS348_14640 PF06183 DinI-like family CS348_14645 PF13991 BssS protein family CS348_14650 PF01266 FAD dependent oxidoreductase CS348_14655 PF10968 Protein of unknown function (DUF2770) CS348_14665 PF01292 Prokaryotic cytochrome b561 CS348_14670 PF04264 YceI-like domain CS348_14680 PF03279 Bacterial lipid A biosynthesis acyltransferase CS348_14690 PF07690 Major Facilitator Superfamily CS348_14695 PF13984 MsyB protein CS348_14700 PF07119 Protein of unknown function (DUF1375) CS348_14705 PF00535 Glycosyl transferase family 2 CS348_14710 PF04349 Periplasmic glucan biosynthesis protein, MdoG CS348_14715 PF01757 Acyltransferase family CS348_14720 PF13091 PLD-like domain CS348_14725 PF01661 Macro domain CS348_14735 PF10610 Thin aggregative fimbriae synthesis protein CS348_14740 PF07012 Curlin associated repeat CS348_14745 PF07012 Curlin associated repeat CS348_14750 PF00196 Bacterial regulatory proteins, luxR family CS348_14755 PF10627 Curli assembly protein CsgE CS348_14760 PF10614 Type VIII secretion system (T8SS), CsgF protein CS348_14765 PF03783 Curli production assembly/transport component CsgG CS348_14770 PF06496 Protein of unknown function (DUF1097) CS348_14775 PF02613 Nitrate reductase delta subunit CS348_14780 PF02811 PHP domain CS348_14785 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CS348_14805 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CS348_14805 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CS348_14810 PF07690 Major Facilitator Superfamily CS348_14815 PF06178 Oligogalacturonate-specific porin protein (KdgM) CS348_14820 PF01344 Kelch motif CS348_14825 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CS348_14835 PF00474 Sodium:solute symporter family CS348_14840 PF01418 Helix-turn-helix domain, rpiR family CS348_14840 PF01380 SIS domain CS348_14845 PF02562 PhoH-like protein CS348_14855 PF00474 Sodium:solute symporter family CS348_14875 PF00440 Bacterial regulatory proteins, tetR family CS348_14875 PF08362 YcdC-like protein, C-terminal region CS348_14880 PF10685 Stress-induced bacterial acidophilic repeat motif CS348_14885 PF03358 NADPH-dependent FMN reductase CS348_14890 PF13993 YccJ-like protein CS348_14895 PF00328 Histidine phosphatase superfamily (branch 2) CS348_14900 PF00578 AhpC/TSA family CS348_14905 PF06965 Na+/H+ antiporter 1 CS348_14905 PF13462 Thioredoxin CS348_14910 PF13098 Thioredoxin-like domain CS348_14910 PF02683 Cytochrome C biogenesis protein transmembrane region CS348_14910 PF11412 Disulphide bond corrector protein DsbC CS348_14925 PF01556 DnaJ C terminal domain CS348_14925 PF00226 DnaJ domain CS348_14945 PF12706 Beta-lactamase superfamily domain CS348_14955 PF07690 Major Facilitator Superfamily CS348_14960 PF03328 HpcH/HpaI aldolase/citrate lyase family CS348_14965 PF01557 Fumarylacetoacetate (FAA) hydrolase family CS348_14970 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase CS348_14975 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CS348_14980 PF00171 Aldehyde dehydrogenase family CS348_14985 PF01557 Fumarylacetoacetate (FAA) hydrolase family CS348_14990 PF01047 MarR family CS348_14995 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CS348_14995 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CS348_15000 PF01613 Flavin reductase like domain CS348_15010 PF00576 HIUase/Transthyretin family CS348_15015 PF00486 Transcriptional regulatory protein, C terminal CS348_15015 PF00072 Response regulator receiver domain CS348_15020 PF00512 His Kinase A (phospho-acceptor) domain CS348_15020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_15025 PF03577 Peptidase family C69 CS348_15035 PF13132 Domain of unknown function (DUF3950) CS348_15040 PF05925 Enterobacterial virulence protein IpgD CS348_15045 PF07824 Type III secretion chaperone domain CS348_15055 PF00805 Pentapeptide repeats (8 copies) CS348_15070 PF01027 Inhibitor of apoptosis-promoting Bax1 CS348_15075 PF04358 DsrC like protein CS348_15080 PF00708 Acylphosphatase CS348_15085 PF12833 Helix-turn-helix domain CS348_15090 PF01161 Phosphatidylethanolamine-binding protein CS348_15095 PF17785 PUA-like domain CS348_15095 PF10672 S-adenosylmethionine-dependent methyltransferase CS348_15100 PF08755 Hemimethylated DNA-binding protein YccV like CS348_15105 PF13380 CoA binding domain CS348_15110 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CS348_15115 PF02142 MGS-like domain CS348_15120 PF00580 UvrD/REP helicase N-terminal domain CS348_15120 PF13361 UvrD-like helicase C-terminal domain CS348_15120 PF12462 DNA helicase IV / RNA helicase N terminal CS348_15125 PF03733 Inner membrane component domain CS348_15130 PF12805 FUSC-like inner membrane protein yccS CS348_15135 PF04993 TfoX N-terminal domain CS348_15135 PF04994 TfoX C-terminal domain CS348_15140 PF03846 Cell division inhibitor SulA CS348_15145 PF00691 OmpA family CS348_15145 PF01389 OmpA-like transmembrane domain CS348_15150 PF17414 MatP C-terminal ribbon-helix-helix domain CS348_15150 PF06303 MatP N-terminal domain CS348_15155 PF05362 Lon protease (S16) C-terminal proteolytic domain CS348_15155 PF13654 AAA domain CS348_15160 PF07977 FabA-like domain CS348_15165 PF04957 Ribosome modulation factor CS348_15170 PF03886 ABC-type transport auxiliary lipoprotein component CS348_15175 PF02470 MlaD protein CS348_15180 PF04403 Paraquat-inducible protein A CS348_15185 PF16326 ABC transporter C-terminal domain CS348_15185 PF00005 ABC transporter CS348_15185 PF12848 ABC transporter CS348_15190 PF10672 S-adenosylmethionine-dependent methyltransferase CS348_15190 PF02926 THUMP domain CS348_15190 PF01170 Putative RNA methylase family UPF0020 CS348_15195 PF00111 2Fe-2S iron-sulfur cluster binding domain CS348_15195 PF03476 MOSC N-terminal beta barrel domain CS348_15195 PF03473 MOSC domain CS348_15200 PF07126 Cell-division protein ZapC CS348_15205 PF01180 Dihydroorotate dehydrogenase CS348_15210 PF01433 Peptidase family M1 domain CS348_15210 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CS348_15210 PF11940 Domain of unknown function (DUF3458) Ig-like fold CS348_15215 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CS348_15215 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CS348_15220 PF00152 tRNA synthetases class II (D, K and N) CS348_15220 PF01336 OB-fold nucleic acid binding domain CS348_15225 PF00267 Gram-negative porin CS348_15230 PF00155 Aminotransferase class I and II CS348_15235 PF00753 Metallo-beta-lactamase superfamily CS348_15240 PF05951 Bacterial protein of unknown function (DUF882) CS348_15250 PF03734 L,D-transpeptidase catalytic domain CS348_15250 PF01471 Putative peptidoglycan binding domain CS348_15255 PF16330 MukB hinge domain CS348_15255 PF04310 MukB N-terminal CS348_15260 PF04288 MukE-like family CS348_15265 PF03882 MukF winged-helix domain CS348_15265 PF17193 MukF C-terminal domain CS348_15265 PF17192 MukF middle domain CS348_15270 PF13847 Methyltransferase domain CS348_15275 PF02698 DUF218 domain CS348_15280 PF01636 Phosphotransferase enzyme family CS348_15285 PF02348 Cytidylyltransferase CS348_15290 PF03966 Trm112p-like protein CS348_15295 PF06224 Winged helix DNA-binding domain CS348_15300 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CS348_15305 PF00664 ABC transporter transmembrane region CS348_15305 PF00005 ABC transporter CS348_15310 PF00753 Metallo-beta-lactamase superfamily CS348_15310 PF03772 Competence protein CS348_15315 PF00216 Bacterial DNA-binding protein CS348_15320 PF00575 S1 RNA binding domain CS348_15325 PF02224 Cytidylate kinase CS348_15330 PF01435 Peptidase family M48 CS348_15335 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CS348_15340 PF00266 Aminotransferase class-V CS348_15345 PF04239 Protein of unknown function (DUF421) CS348_15350 PF18381 YcaO cyclodehydratase C-terminal domain CS348_15350 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CS348_15355 PF01226 Formate/nitrite transporter CS348_15360 PF01228 Glycine radical CS348_15360 PF02901 Pyruvate formate lyase-like CS348_15365 PF11047 Salmonella outer protein D CS348_15370 PF04055 Radical SAM superfamily CS348_15375 PF13520 Amino acid permease CS348_15380 PF07690 Major Facilitator Superfamily CS348_15385 PF04976 DMSO reductase anchor subunit (DmsC) CS348_15390 PF13247 4Fe-4S dicluster domain CS348_15390 PF12800 4Fe-4S binding domain CS348_15395 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CS348_15395 PF01568 Molydopterin dinucleotide binding domain CS348_15395 PF00384 Molybdopterin oxidoreductase CS348_15400 PF02403 Seryl-tRNA synthetase N-terminal domain CS348_15400 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CS348_15405 PF00004 ATPase family associated with various cellular activities (AAA) CS348_15405 PF16193 AAA C-terminal domain CS348_15405 PF12002 MgsA AAA+ ATPase C terminal CS348_15410 PF03548 Outer membrane lipoprotein carrier protein LolA CS348_15415 PF01580 FtsK/SpoIIIE family CS348_15415 PF09397 Ftsk gamma domain CS348_15415 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CS348_15415 PF17854 FtsK alpha domain CS348_15420 PF01037 Lrp/AsnC ligand binding domain CS348_15430 PF07992 Pyridine nucleotide-disulphide oxidoreductase CS348_15435 PF00005 ABC transporter CS348_15435 PF00664 ABC transporter transmembrane region CS348_15440 PF00005 ABC transporter CS348_15440 PF00664 ABC transporter transmembrane region CS348_15445 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CS348_15455 PF01176 Translation initiation factor 1A / IF-1 CS348_15460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_15460 PF03466 LysR substrate binding domain CS348_15465 PF02678 Pirin CS348_15465 PF05726 Pirin C-terminal cupin domain CS348_15470 PF00857 Isochorismatase family CS348_15480 PF17871 AAA lid domain CS348_15480 PF07724 AAA domain (Cdc48 subfamily) CS348_15480 PF02861 Clp amino terminal domain, pathogenicity island component CS348_15480 PF00004 ATPase family associated with various cellular activities (AAA) CS348_15480 PF10431 C-terminal, D2-small domain, of ClpB protein CS348_15485 PF02617 ATP-dependent Clp protease adaptor protein ClpS CS348_15490 PF00313 'Cold-shock' DNA-binding domain CS348_15495 PF02687 FtsX-like permease family CS348_15495 PF00005 ABC transporter CS348_15495 PF12704 MacB-like periplasmic core domain CS348_15500 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CS348_15505 PF04393 Protein of unknown function (DUF535) CS348_15510 PF11398 Protein of unknown function (DUF2813) CS348_15520 PF03956 Lysine exporter LysO CS348_15525 PF03063 Prismane/CO dehydrogenase family CS348_15530 PF00111 2Fe-2S iron-sulfur cluster binding domain CS348_15530 PF00175 Oxidoreductase NAD-binding domain CS348_15530 PF00970 Oxidoreductase FAD-binding domain CS348_15535 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CS348_15535 PF00205 Thiamine pyrophosphate enzyme, central domain CS348_15535 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CS348_15540 PF01212 Beta-eliminating lyase CS348_15545 PF11066 Protein of unknown function (DUF2867) CS348_15545 PF13460 NAD(P)H-binding CS348_15550 PF01370 NAD dependent epimerase/dehydratase family CS348_15555 PF01510 N-acetylmuramoyl-L-alanine amidase CS348_15560 PF01906 Putative heavy-metal-binding CS348_15565 PF06183 DinI-like family CS348_15570 PF03515 Colicin-like bacteriocin tRNase domain CS348_15570 PF11429 Colicin D CS348_15570 PF06958 S-type Pyocin CS348_15585 PF01527 Transposase CS348_15600 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) CS348_15605 PF04865 Baseplate J-like protein CS348_15645 PF04984 Phage tail sheath protein subtilisin-like domain CS348_15645 PF17482 Phage tail sheath C-terminal domain CS348_15690 PF03354 Phage Terminase CS348_15715 PF10721 Protein of unknown function (DUF2514) CS348_15720 PF00182 Chitinase class I CS348_15735 PF03589 Antitermination protein CS348_15765 PF01381 Helix-turn-helix CS348_15765 PF00717 Peptidase S24-like CS348_15815 PF02768 DNA polymerase III beta subunit, C-terminal domain CS348_15815 PF02767 DNA polymerase III beta subunit, central domain CS348_15815 PF00712 DNA polymerase III beta subunit, N-terminal domain CS348_15850 PF00589 Phage integrase family CS348_15850 PF12167 Arm DNA-binding domain CS348_15855 PF12883 Protein of unknown function (DUF3828) CS348_15860 PF00005 ABC transporter CS348_15865 PF00497 Bacterial extracellular solute-binding proteins, family 3 CS348_15870 PF00528 Binding-protein-dependent transport system inner membrane component CS348_15875 PF00528 Binding-protein-dependent transport system inner membrane component CS348_15880 PF00497 Bacterial extracellular solute-binding proteins, family 3 CS348_15900 PF03611 PTS system sugar-specific permease component CS348_15905 PF05958 tRNA (Uracil-5-)-methyltransferase CS348_15910 PF10767 Protein of unknown function (DUF2593) CS348_15915 PF00528 Binding-protein-dependent transport system inner membrane component CS348_15920 PF00528 Binding-protein-dependent transport system inner membrane component CS348_15925 PF00005 ABC transporter CS348_15925 PF08402 TOBE domain CS348_15930 PF13416 Bacterial extracellular solute-binding protein CS348_15935 PF10722 Putative bacterial sensory transduction regulator CS348_15940 PF18030 RimK PreATP-grasp domain CS348_15940 PF08443 RimK-like ATP-grasp domain CS348_15945 PF00881 Nitroreductase family CS348_15950 PF07214 Protein of unknown function (DUF1418) CS348_15955 PF00462 Glutaredoxin CS348_15960 PF11045 Putative inner membrane protein of Enterobacteriaceae CS348_15965 PF02080 TrkA-C domain CS348_15965 PF06826 Predicted Permease Membrane Region CS348_15975 PF00440 Bacterial regulatory proteins, tetR family CS348_15980 PF07690 Major Facilitator Superfamily CS348_15990 PF07690 Major Facilitator Superfamily CS348_15995 PF01569 PAP2 superfamily CS348_16000 PF00455 DeoR C terminal sensor domain CS348_16000 PF08220 DeoR-like helix-turn-helix domain CS348_16005 PF07943 Penicillin-binding protein 5, C-terminal domain CS348_16005 PF00768 D-alanyl-D-alanine carboxypeptidase CS348_16010 PF00043 Glutathione S-transferase, C-terminal domain CS348_16010 PF13417 Glutathione S-transferase, N-terminal domain CS348_16015 PF07995 Glucose / Sorbosone dehydrogenase CS348_16020 PF07995 Glucose / Sorbosone dehydrogenase CS348_16030 PF03466 LysR substrate binding domain CS348_16030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_16040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CS348_16040 PF02770 Acyl-CoA dehydrogenase, middle domain CS348_16040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CS348_16055 PF01012 Electron transfer flavoprotein domain CS348_16060 PF03328 HpcH/HpaI aldolase/citrate lyase family CS348_16070 PF10799 Biofilm formation protein (YliH/bssR) CS348_16075 PF18693 TRAM domain CS348_16075 PF04055 Radical SAM superfamily CS348_16075 PF00919 Uncharacterized protein family UPF0004 CS348_16080 PF12911 N-terminal TM domain of oligopeptide transport permease C CS348_16080 PF00528 Binding-protein-dependent transport system inner membrane component CS348_16085 PF00528 Binding-protein-dependent transport system inner membrane component CS348_16090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CS348_16095 PF00005 ABC transporter CS348_16095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CS348_16100 PF01112 Asparaginase CS348_16105 PF03454 MoeA C-terminal region (domain IV) CS348_16105 PF00994 Probable molybdopterin binding domain CS348_16105 PF03453 MoeA N-terminal region (domain I and II) CS348_16110 PF00899 ThiF family CS348_16115 PF04055 Radical SAM superfamily CS348_16130 PF07350 Protein of unknown function (DUF1479) CS348_16135 PF00005 ABC transporter CS348_16135 PF12848 ABC transporter CS348_16140 PF03734 L,D-transpeptidase catalytic domain CS348_16140 PF17969 L,D-transpeptidase C-terminal domain CS348_16145 PF03600 Citrate transporter CS348_16150 PF02742 Iron dependent repressor, metal binding and dimerisation domain CS348_16150 PF01325 Iron dependent repressor, N-terminal DNA binding domain CS348_16160 PF00884 Sulfatase CS348_16165 PF13505 Outer membrane protein beta-barrel domain CS348_16170 PF00892 EamA-like transporter family CS348_16175 PF00210 Ferritin-like domain CS348_16180 PF00497 Bacterial extracellular solute-binding proteins, family 3 CS348_16185 PF00528 Binding-protein-dependent transport system inner membrane component CS348_16190 PF00005 ABC transporter CS348_16195 PF00924 Mechanosensitive ion channel CS348_16200 PF05971 RNA methyltransferase CS348_16205 PF01258 Prokaryotic dksA/traR C4-type zinc finger CS348_16210 PF07338 Protein of unknown function (DUF1471) CS348_16215 PF02885 Glycosyl transferase family, helical bundle domain CS348_16220 PF06733 DEAD_2 CS348_16220 PF13307 Helicase C-terminal domain CS348_16225 PF00271 Helicase conserved C-terminal domain CS348_16225 PF00270 DEAD/DEAH box helicase CS348_16230 PF09209 Tetracyclin repressor-like, C-terminal domain CS348_16230 PF00440 Bacterial regulatory proteins, tetR family CS348_16235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CS348_16240 PF00005 ABC transporter CS348_16255 PF11076 Putative inner membrane protein YbhQ CS348_16260 PF03372 Endonuclease/Exonuclease/phosphatase family CS348_16265 PF13091 PLD-like domain CS348_16270 PF03706 Lysylphosphatidylglycerol synthase TM region CS348_16295 PF01027 Inhibitor of apoptosis-promoting Bax1 CS348_16300 PF02391 MoaE protein CS348_16305 PF02597 ThiS family CS348_16310 PF01967 MoaC family CS348_16315 PF00994 Probable molybdopterin binding domain CS348_16320 PF04055 Radical SAM superfamily CS348_16320 PF06463 Molybdenum Cofactor Synthesis C CS348_16325 PF01933 Uncharacterised protein family UPF0052 CS348_16330 PF12468 Type III secretion system leucine rich repeat protein CS348_16330 PF14496 C-terminal novel E3 ligase, LRR-interacting CS348_16340 PF00271 Helicase conserved C-terminal domain CS348_16340 PF17757 UvrB interaction domain CS348_16340 PF12344 Ultra-violet resistance protein B CS348_16340 PF04851 Type III restriction enzyme, res subunit CS348_16340 PF02151 UvrB/uvrC motif CS348_16355 PF08241 Methyltransferase domain CS348_16360 PF00155 Aminotransferase class I and II CS348_16365 PF04055 Radical SAM superfamily CS348_16365 PF06968 Biotin and Thiamin Synthesis associated domain CS348_16370 PF00202 Aminotransferase class-III CS348_16375 PF01161 Phosphatidylethanolamine-binding protein CS348_16380 PF00221 Aromatic amino acid lyase CS348_16385 PF01175 Urocanase Rossmann-like domain CS348_16385 PF17391 Urocanase N-terminal domain CS348_16385 PF17392 Urocanase C-terminal domain CS348_16390 PF07702 UTRA domain CS348_16390 PF00392 Bacterial regulatory proteins, gntR family CS348_16395 PF00491 Arginase family CS348_16400 PF01979 Amidohydrolase family CS348_16405 PF01095 Pectinesterase CS348_16410 PF10282 Lactonase, 7-bladed beta-propeller CS348_16420 PF03459 TOBE domain CS348_16420 PF00005 ABC transporter CS348_16425 PF00528 Binding-protein-dependent transport system inner membrane component CS348_16435 PF10766 Multidrug efflux pump-associated protein AcrZ CS348_16440 PF03459 TOBE domain CS348_16440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_16450 PF00005 ABC transporter CS348_16460 PF16363 GDP-mannose 4,6 dehydratase CS348_16465 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CS348_16465 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CS348_16470 PF10509 Galactokinase galactose-binding signature CS348_16470 PF00288 GHMP kinases N terminal domain CS348_16470 PF08544 GHMP kinases C terminal CS348_16475 PF01263 Aldose 1-epimerase CS348_16485 PF00300 Histidine phosphatase superfamily (branch 1) CS348_16490 PF00005 ABC transporter CS348_16495 PF01032 FecCD transport family CS348_16500 PF00793 DAHP synthetase I family CS348_16505 PF13985 YbgS-like protein CS348_16510 PF01545 Cation efflux family CS348_16515 PF04973 Nicotinamide mononucleotide transporter CS348_16520 PF02445 Quinolinate synthetase A protein CS348_16565 PF16331 TolA binding protein trimerisation CS348_16565 PF13174 Tetratricopeptide repeat CS348_16570 PF00691 OmpA family CS348_16575 PF07676 WD40-like Beta Propeller Repeat CS348_16575 PF04052 TolB amino-terminal domain CS348_16580 PF06519 TolA C-terminal CS348_16585 PF02472 Biopolymer transport protein ExbD/TolR CS348_16590 PF01618 MotA/TolQ/ExbB proton channel family CS348_16595 PF03061 Thioesterase superfamily CS348_16600 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CS348_16605 PF08173 Membrane bound YbgT-like protein CS348_16610 PF02322 Cytochrome bd terminal oxidase subunit II CS348_16615 PF01654 Cytochrome bd terminal oxidase subunit I CS348_16620 PF02629 CoA binding domain CS348_16620 PF00549 CoA-ligase CS348_16625 PF00549 CoA-ligase CS348_16625 PF08442 ATP-grasp domain CS348_16630 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CS348_16630 PF00364 Biotin-requiring enzyme CS348_16630 PF02817 e3 binding domain CS348_16635 PF02779 Transketolase, pyrimidine binding domain CS348_16635 PF16870 2-oxoglutarate dehydrogenase C-terminal CS348_16635 PF00676 Dehydrogenase E1 component CS348_16635 PF16078 2-oxoglutarate dehydrogenase N-terminus CS348_16640 PF13085 2Fe-2S iron-sulfur cluster binding domain CS348_16645 PF00890 FAD binding domain CS348_16645 PF02910 Fumarate reductase flavoprotein C-term CS348_16650 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CS348_16655 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CS348_16670 PF00285 Citrate synthase, C-terminal domain CS348_16675 PF05145 Transition state regulatory protein AbrB CS348_16680 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CS348_16680 PF06827 Zinc finger found in FPG and IleRS CS348_16680 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CS348_16685 PF03746 LamB/YcsF family CS348_16690 PF02626 Carboxyltransferase domain, subdomain A and B CS348_16695 PF02682 Carboxyltransferase domain, subdomain C and D CS348_16700 PF01784 NIF3 (NGG1p interacting factor 3) CS348_16710 PF00854 POT family CS348_16715 PF00875 DNA photolyase CS348_16715 PF03441 FAD binding domain of DNA photolyase CS348_16720 PF10725 Protein of unknown function (DUF2517) CS348_16725 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) CS348_16730 PF03814 Potassium-transporting ATPase A subunit CS348_16740 PF02669 K+-transporting ATPase, c chain CS348_16745 PF13492 GAF domain CS348_16745 PF02702 Osmosensitive K+ channel His kinase sensor domain CS348_16745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_16745 PF13493 Domain of unknown function (DUF4118) CS348_16745 PF00512 His Kinase A (phospho-acceptor) domain CS348_16750 PF00072 Response regulator receiver domain CS348_16750 PF00486 Transcriptional regulatory protein, C terminal CS348_16755 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CS348_16755 PF01276 Orn/Lys/Arg decarboxylase, major domain CS348_16755 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CS348_16760 PF13520 Amino acid permease CS348_16770 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CS348_16770 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CS348_16770 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CS348_16770 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CS348_16775 PF03925 SeqA protein C-terminal domain CS348_16775 PF17206 SeqA protein N-terminal domain CS348_16780 PF12697 Alpha/beta hydrolase family CS348_16785 PF01402 Ribbon-helix-helix protein, copG family CS348_16790 PF00258 Flavodoxin CS348_16795 PF01475 Ferric uptake regulator family CS348_16800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_16800 PF03466 LysR substrate binding domain CS348_16805 PF14537 Cytochrome c3 CS348_16805 PF00890 FAD binding domain CS348_16815 PF07690 Major Facilitator Superfamily CS348_16820 PF13982 YbfN-like lipoprotein CS348_16825 PF03573 outer membrane porin, OprD family CS348_16830 PF00749 tRNA synthetases class I (E and Q), catalytic domain CS348_16830 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CS348_16835 PF00367 phosphotransferase system, EIIB CS348_16835 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CS348_16835 PF02378 Phosphotransferase system, EIIC CS348_16840 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CS348_16845 PF01979 Amidohydrolase family CS348_16850 PF01047 MarR family CS348_16850 PF00480 ROK family CS348_16855 PF13344 Haloacid dehalogenase-like hydrolase CS348_16860 PF00733 Asparagine synthase CS348_16860 PF13537 Glutamine amidotransferase domain CS348_16900 PF01494 FAD binding domain CS348_16905 PF01938 TRAM domain CS348_16905 PF04055 Radical SAM superfamily CS348_16905 PF00919 Uncharacterized protein family UPF0004 CS348_16910 PF02562 PhoH-like protein CS348_16915 PF02130 Uncharacterized protein family UPF0054 CS348_16920 PF03471 Transporter associated domain CS348_16920 PF00571 CBS domain CS348_16925 PF00795 Carbon-nitrogen hydrolase CS348_16935 PF00497 Bacterial extracellular solute-binding proteins, family 3 CS348_16940 PF00528 Binding-protein-dependent transport system inner membrane component CS348_16945 PF00528 Binding-protein-dependent transport system inner membrane component CS348_16950 PF00005 ABC transporter CS348_16955 PF01156 Inosine-uridine preferring nucleoside hydrolase CS348_16960 PF07295 Zinc-ribbon containing domain CS348_16965 PF00158 Sigma-54 interaction domain CS348_16965 PF00989 PAS fold CS348_16965 PF02954 Bacterial regulatory protein, Fis family CS348_16970 PF03812 2-keto-3-deoxygluconate permease CS348_16975 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CS348_16985 PF00133 tRNA synthetases class I (I, L, M and V) CS348_16985 PF13603 Leucyl-tRNA synthetase, Domain 2 CS348_16985 PF08264 Anticodon-binding domain of tRNA CS348_16990 PF04390 Lipopolysaccharide-assembly CS348_16995 PF06144 DNA polymerase III, delta subunit CS348_16995 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CS348_17000 PF01467 Cytidylyltransferase-like CS348_17005 PF00155 Aminotransferase class I and II CS348_17010 PF00300 Histidine phosphatase superfamily (branch 1) CS348_17020 PF02590 Predicted SPOUT methyltransferase CS348_17025 PF00905 Penicillin binding protein transpeptidase domain CS348_17025 PF03717 Penicillin-binding Protein dimerisation domain CS348_17030 PF01098 Cell cycle protein CS348_17035 PF05036 Sporulation related domain CS348_17035 PF03330 Lytic transglycolase CS348_17040 PF07943 Penicillin-binding protein 5, C-terminal domain CS348_17040 PF00768 D-alanyl-D-alanine carboxypeptidase CS348_17045 PF04359 Protein of unknown function (DUF493) CS348_17050 PF03099 Biotin/lipoate A/B protein ligase family CS348_17055 PF03466 LysR substrate binding domain CS348_17055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_17060 PF04055 Radical SAM superfamily CS348_17060 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CS348_17065 PF02416 mttA/Hcf106 family CS348_17070 PF00795 Carbon-nitrogen hydrolase CS348_17075 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CS348_17080 PF00313 'Cold-shock' DNA-binding domain CS348_17085 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CS348_17095 PF03606 C4-dicarboxylate anaerobic carrier CS348_17100 PF12431 Transcriptional regulator CS348_17100 PF00072 Response regulator receiver domain CS348_17105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_17105 PF00989 PAS fold CS348_17105 PF17203 Single cache domain 3 CS348_17105 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CS348_17115 PF08218 Citrate lyase ligase C-terminal domain CS348_17120 PF06857 Malonate decarboxylase delta subunit (MdcD) CS348_17125 PF03328 HpcH/HpaI aldolase/citrate lyase family CS348_17130 PF04223 Citrate lyase, alpha subunit (CitF) CS348_17135 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CS348_17140 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CS348_17145 PF00939 Sodium:sulfate symporter transmembrane region CS348_17150 PF00445 Ribonuclease T2 family CS348_17160 PF14760 Rnk N-terminus CS348_17160 PF01272 Transcription elongation factor, GreA/GreB, C-term CS348_17165 PF00107 Zinc-binding dehydrogenase CS348_17165 PF08240 Alcohol dehydrogenase GroES-like domain CS348_17165 PF13823 Alcohol dehydrogenase GroES-associated CS348_17170 PF00582 Universal stress protein family CS348_17180 PF13247 4Fe-4S dicluster domain CS348_17185 PF00384 Molybdopterin oxidoreductase CS348_17185 PF01568 Molydopterin dinucleotide binding domain CS348_17185 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CS348_17195 PF13192 Thioredoxin domain CS348_17195 PF07992 Pyridine nucleotide-disulphide oxidoreductase CS348_17200 PF00578 AhpC/TSA family CS348_17200 PF10417 C-terminal domain of 1-Cys peroxiredoxin CS348_17205 PF13098 Thioredoxin-like domain CS348_17215 PF03466 LysR substrate binding domain CS348_17215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_17220 PF01507 Phosphoadenosine phosphosulfate reductase family CS348_17220 PF11922 Domain of unknown function (DUF3440) CS348_17225 PF02195 ParB-like nuclease domain CS348_17230 PF00155 Aminotransferase class I and II CS348_17235 PF00465 Iron-containing alcohol dehydrogenase CS348_17240 PF04328 Selenoprotein, putative CS348_17245 PF02554 Carbon starvation protein CstA CS348_17245 PF13722 5TM C-terminal transporter carbon starvation CstA CS348_17250 PF03061 Thioesterase superfamily CS348_17260 PF00857 Isochorismatase family CS348_17260 PF00550 Phosphopantetheine attachment site CS348_17265 PF13193 AMP-binding enzyme C-terminal domain CS348_17265 PF00501 AMP-binding enzyme CS348_17270 PF00425 chorismate binding enzyme CS348_17275 PF01497 Periplasmic binding protein CS348_17280 PF05977 Transmembrane secretion effector CS348_17285 PF01032 FecCD transport family CS348_17290 PF01032 FecCD transport family CS348_17295 PF00005 ABC transporter CS348_17300 PF02706 Chain length determinant protein CS348_17305 PF00550 Phosphopantetheine attachment site CS348_17305 PF00668 Condensation domain CS348_17305 PF00975 Thioesterase domain CS348_17305 PF13193 AMP-binding enzyme C-terminal domain CS348_17305 PF00501 AMP-binding enzyme CS348_17310 PF03621 MbtH-like protein CS348_17315 PF11806 Domain of unknown function (DUF3327) CS348_17315 PF00756 Putative esterase CS348_17320 PF07715 TonB-dependent Receptor Plug Domain CS348_17320 PF00593 TonB dependent receptor CS348_17325 PF01648 4'-phosphopantetheinyl transferase superfamily CS348_17325 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CS348_17330 PF04107 Glutamate-cysteine ligase family 2(GCS2) CS348_17335 PF06643 Protein of unknown function (DUF1158) CS348_17340 PF12833 Helix-turn-helix domain CS348_17345 PF16295 Tetracyclin repressor-like, C-terminal domain CS348_17345 PF00440 Bacterial regulatory proteins, tetR family CS348_17350 PF04237 YjbR CS348_17355 PF00881 Nitroreductase family CS348_17360 PF03797 Autotransporter beta-domain CS348_17360 PF00657 GDSL-like Lipase/Acylhydrolase CS348_17370 PF00324 Amino acid permease CS348_17380 PF04224 Protein of unknown function, DUF417 CS348_17385 PF07338 Protein of unknown function (DUF1471) CS348_17390 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CS348_17390 PF07992 Pyridine nucleotide-disulphide oxidoreductase CS348_17395 PF12852 Cupin CS348_17395 PF12833 Helix-turn-helix domain CS348_17400 PF00873 AcrB/AcrD/AcrF family CS348_17405 PF00672 HAMP domain CS348_17405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_17405 PF00512 His Kinase A (phospho-acceptor) domain CS348_17430 PF11429 Colicin D CS348_17430 PF03515 Colicin-like bacteriocin tRNase domain CS348_17430 PF06958 S-type Pyocin CS348_17445 PF01527 Transposase CS348_17450 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CS348_17455 PF07484 Phage Tail Collar Domain CS348_17455 PF08400 Prophage tail fibre N-terminal CS348_17455 PF08400 Prophage tail fibre N-terminal CS348_17455 PF07484 Phage Tail Collar Domain CS348_17455 PF03335 Phage tail fibre repeat CS348_17455 PF03335 Phage tail fibre repeat CS348_17525 PF00574 Clp protease CS348_17570 PF00959 Phage lysozyme CS348_17585 PF03589 Antitermination protein CS348_17635 PF01807 CHC2 zinc finger CS348_17635 PF10410 DnaB-helicase binding domain of primase CS348_17635 PF08275 DNA primase catalytic core, N-terminal domain CS348_17665 PF13356 Arm DNA-binding domain CS348_17665 PF14659 Phage integrase, N-terminal SAM-like domain CS348_17665 PF00589 Phage integrase family CS348_17680 PF00196 Bacterial regulatory proteins, luxR family CS348_17695 PF00196 Bacterial regulatory proteins, luxR family CS348_17695 PF00072 Response regulator receiver domain CS348_17700 PF00419 Fimbrial protein CS348_17705 PF00419 Fimbrial protein CS348_17710 PF00577 Outer membrane usher protein CS348_17710 PF13954 PapC N-terminal domain CS348_17710 PF13953 PapC C-terminal domain CS348_17715 PF02753 Pili assembly chaperone PapD, C-terminal domain CS348_17715 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CS348_17725 PF00419 Fimbrial protein CS348_17735 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CS348_17735 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CS348_17760 PF09190 DALR domain CS348_17760 PF01406 tRNA synthetases class I (C) catalytic domain CS348_17765 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CS348_17770 PF12850 Calcineurin-like phosphoesterase superfamily domain CS348_17780 PF00731 AIR carboxylase CS348_17785 PF02222 ATP-grasp domain CS348_17785 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CS348_17795 PF00528 Binding-protein-dependent transport system inner membrane component CS348_17800 PF09383 NIL domain CS348_17800 PF00005 ABC transporter CS348_17805 PF03180 NLPA lipoprotein CS348_17820 PF00005 ABC transporter CS348_17825 PF13472 GDSL-like Lipase/Acylhydrolase family CS348_17830 PF00106 short chain dehydrogenase CS348_17835 PF00085 Thioredoxin CS348_17840 PF03649 Uncharacterised protein family (UPF0014) CS348_17845 PF00005 ABC transporter CS348_17850 PF16200 C-terminal region of band_7 CS348_17850 PF01145 SPFH domain / Band 7 family CS348_17855 PF01957 NfeD-like C-terminal, partner-binding CS348_17860 PF13411 MerR HTH family regulatory protein CS348_17865 PF00403 Heavy-metal-associated domain CS348_17875 PF01963 TraB family CS348_17880 PF04073 Aminoacyl-tRNA editing domain CS348_17885 PF00149 Calcineurin-like phosphoesterase CS348_17885 PF02872 5'-nucleotidase, C-terminal domain CS348_17890 PF07690 Major Facilitator Superfamily CS348_17895 PF00999 Sodium/hydrogen exchanger family CS348_17895 PF02254 TrkA-N domain CS348_17900 PF00294 pfkB family carbohydrate kinase CS348_17905 PF07859 alpha/beta hydrolase fold CS348_17910 PF00762 Ferrochelatase CS348_17915 PF05191 Adenylate kinase, active site lid CS348_17925 PF00183 Hsp90 protein CS348_17925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_17930 PF13662 Toprim domain CS348_17930 PF02132 RecR protein CS348_17935 PF02575 YbaB/EbfC DNA-binding family CS348_17940 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CS348_17940 PF12170 DNA polymerase III tau subunit V interacting with alpha CS348_17940 PF12169 DNA polymerase III subunits gamma and tau domain III CS348_17945 PF00156 Phosphoribosyl transferase domain CS348_17955 PF04304 Protein of unknown function (DUF454) CS348_17960 PF07445 Primosomal replication protein priC CS348_17965 PF10689 Protein of unknown function (DUF2496) CS348_17975 PF12794 Mechanosensitive ion channel inner membrane domain 1 CS348_17975 PF12795 Mechanosensitive ion channel porin domain CS348_17975 PF00924 Mechanosensitive ion channel CS348_17980 PF08361 MAATS-type transcriptional repressor, C-terminal region CS348_17980 PF00440 Bacterial regulatory proteins, tetR family CS348_17985 PF00529 HlyD membrane-fusion protein of T1SS CS348_17985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CS348_17990 PF00873 AcrB/AcrD/AcrF family CS348_17995 PF10757 Biofilm formation regulator YbaJ CS348_18000 PF05321 Haemolysin expression modulating protein CS348_18005 PF12464 Maltose acetyltransferase CS348_18005 PF14602 Hexapeptide repeat of succinyl-transferase CS348_18010 PF10777 Inner membrane protein YlaC CS348_18015 PF00444 Ribosomal protein L36 CS348_18020 PF01197 Ribosomal protein L31 CS348_18025 PF00563 EAL domain CS348_18025 PF12792 CSS motif domain associated with EAL CS348_18035 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CS348_18040 PF09619 Type III secretion system lipoprotein chaperone (YscW) CS348_18050 PF00909 Ammonium Transporter Family CS348_18055 PF00543 Nitrogen regulatory protein P-II CS348_18060 PF00005 ABC transporter CS348_18060 PF00664 ABC transporter transmembrane region CS348_18065 PF00005 ABC transporter CS348_18065 PF00664 ABC transporter transmembrane region CS348_18070 PF13404 AsnC-type helix-turn-helix domain CS348_18070 PF01037 Lrp/AsnC ligand binding domain CS348_18085 PF12793 Sugar transport-related sRNA regulator N-term CS348_18085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CS348_18090 PF06508 Queuosine biosynthesis protein QueC CS348_18105 PF13145 PPIC-type PPIASE domain CS348_18110 PF00216 Bacterial DNA-binding protein CS348_18115 PF05362 Lon protease (S16) C-terminal proteolytic domain CS348_18115 PF02190 ATP-dependent protease La (LON) substrate-binding domain CS348_18115 PF00004 ATPase family associated with various cellular activities (AAA) CS348_18120 PF06689 ClpX C4-type zinc finger CS348_18120 PF10431 C-terminal, D2-small domain, of ClpB protein CS348_18120 PF07724 AAA domain (Cdc48 subfamily) CS348_18125 PF00574 Clp protease CS348_18130 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CS348_18130 PF05697 Bacterial trigger factor protein (TF) CS348_18130 PF05698 Bacterial trigger factor protein (TF) C-terminus CS348_18140 PF01722 BolA-like protein CS348_18150 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CS348_18150 PF03923 Uncharacterized lipoprotein CS348_18155 PF07690 Major Facilitator Superfamily CS348_18160 PF06481 COX Aromatic Rich Motif CS348_18160 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CS348_18165 PF00115 Cytochrome C and Quinol oxidase polypeptide I CS348_18170 PF00510 Cytochrome c oxidase subunit III CS348_18175 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CS348_18180 PF01040 UbiA prenyltransferase family CS348_18185 PF07690 Major Facilitator Superfamily CS348_18190 PF04461 Protein of unknown function (DUF520) CS348_18195 PF02558 Ketopantoate reductase PanE/ApbA CS348_18195 PF08546 Ketopantoate reductase PanE/ApbA C terminal CS348_18200 PF01965 DJ-1/PfpI family CS348_18210 PF00266 Aminotransferase class-V CS348_18215 PF07702 UTRA domain CS348_18215 PF00392 Bacterial regulatory proteins, gntR family CS348_18220 PF01547 Bacterial extracellular solute-binding protein CS348_18225 PF00005 ABC transporter CS348_18225 PF08402 TOBE domain CS348_18230 PF00528 Binding-protein-dependent transport system inner membrane component CS348_18235 PF00528 Binding-protein-dependent transport system inner membrane component CS348_18240 PF02568 Thiamine biosynthesis protein (ThiI) CS348_18240 PF02926 THUMP domain CS348_18245 PF02609 Exonuclease VII small subunit CS348_18250 PF00348 Polyprenyl synthetase CS348_18255 PF02779 Transketolase, pyrimidine binding domain CS348_18255 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CS348_18255 PF02780 Transketolase, C-terminal domain CS348_18260 PF00248 Aldo/keto reductase family CS348_18265 PF04608 Phosphatidylglycerophosphatase A CS348_18270 PF02769 AIR synthase related protein, C-terminal domain CS348_18270 PF00586 AIR synthase related protein, N-terminal domain CS348_18275 PF01029 NusB family CS348_18280 PF00885 6,7-dimethyl-8-ribityllumazine synthase CS348_18285 PF01872 RibD C-terminal domain CS348_18285 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CS348_18290 PF03477 ATP cone domain CS348_18295 PF11622 Protein of unknown function (DUF3251) CS348_18300 PF03502 Nucleoside-specific channel-forming protein, Tsx CS348_18315 PF01844 HNH endonuclease CS348_18320 PF07549 SecD/SecF GG Motif CS348_18320 PF02355 Protein export membrane protein CS348_18325 PF13721 SecD export protein N-terminal TM region CS348_18325 PF02355 Protein export membrane protein CS348_18325 PF07549 SecD/SecF GG Motif CS348_18330 PF02699 Preprotein translocase subunit CS348_18335 PF01702 Queuine tRNA-ribosyltransferase CS348_18345 PF02547 Queuosine biosynthesis protein CS348_18350 PF04336 Acyl carrier protein phosphodiesterase CS348_18355 PF10417 C-terminal domain of 1-Cys peroxiredoxin CS348_18355 PF00578 AhpC/TSA family CS348_18360 PF02903 Alpha amylase, N-terminal ig-like domain CS348_18360 PF00128 Alpha amylase, catalytic domain CS348_18365 PF00324 Amino acid permease CS348_18370 PF05525 Branched-chain amino acid transport protein CS348_18375 PF00989 PAS fold CS348_18375 PF11808 Phosphate regulon sensor protein PhoR CS348_18375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_18375 PF00512 His Kinase A (phospho-acceptor) domain CS348_18380 PF00072 Response regulator receiver domain CS348_18380 PF00486 Transcriptional regulatory protein, C terminal CS348_18385 PF12320 Type 5 capsule protein repressor C-terminal domain CS348_18385 PF00149 Calcineurin-like phosphoesterase CS348_18390 PF13476 AAA domain CS348_18395 PF07690 Major Facilitator Superfamily CS348_18400 PF00480 ROK family CS348_18405 PF04381 Putative exonuclease, RdgC CS348_18410 PF06865 Pyrimidine/purine nucleoside phosphorylase CS348_18415 PF07302 AroM protein CS348_18420 PF16362 YaiA protein CS348_18425 PF01202 Shikimate kinase CS348_18430 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CS348_18435 PF03807 NADP oxidoreductase coenzyme F420-dependent CS348_18435 PF14748 Pyrroline-5-carboxylate reductase dimerisation CS348_18440 PF00990 Diguanylate cyclase, GGDEF domain CS348_18440 PF05230 MASE2 domain CS348_18445 PF07769 psiF repeat CS348_18455 PF10796 Sigma-S stabilisation anti-adaptor protein CS348_18460 PF07690 Major Facilitator Superfamily CS348_18470 PF01820 D-ala D-ala ligase N-terminus CS348_18470 PF07478 D-ala D-ala ligase C-terminus CS348_18475 PF10953 Protein of unknown function (DUF2754) CS348_18480 PF10954 Protein of unknown function (DUF2755) CS348_18485 PF07759 Protein of unknown function (DUF1615) CS348_18490 PF05992 SbmA/BacA-like family CS348_18500 PF00144 Beta-lactamase CS348_18505 PF15977 Winged helix-turn-helix DNA binding CS348_18510 PF03797 Autotransporter beta-domain CS348_18515 PF00490 Delta-aminolevulinic acid dehydratase CS348_18520 PF00501 AMP-binding enzyme CS348_18520 PF13193 AMP-binding enzyme C-terminal domain CS348_18520 PF16177 Acetyl-coenzyme A synthetase N-terminus CS348_18525 PF03972 MmgE/PrpD family CS348_18530 PF00285 Citrate synthase, C-terminal domain CS348_18540 PF06506 Propionate catabolism activator CS348_18540 PF02954 Bacterial regulatory protein, Fis family CS348_18540 PF00158 Sigma-54 interaction domain CS348_18545 PF07338 Protein of unknown function (DUF1471) CS348_18550 PF01810 LysE type translocator CS348_18555 PF00593 TonB dependent receptor CS348_18555 PF07715 TonB-dependent Receptor Plug Domain CS348_18570 PF02322 Cytochrome bd terminal oxidase subunit II CS348_18575 PF01654 Cytochrome bd terminal oxidase subunit I CS348_18585 PF04851 Type III restriction enzyme, res subunit CS348_18585 PF08774 VRR-NUC domain CS348_18590 PF01555 DNA methylase CS348_18590 PF18273 Type III R-M EcoP15I C-terminal domain CS348_18595 PF07690 Major Facilitator Superfamily CS348_18605 PF00376 MerR family regulatory protein CS348_18605 PF09278 MerR, DNA binding CS348_18610 PF00403 Heavy-metal-associated domain CS348_18615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CS348_18620 PF00873 AcrB/AcrD/AcrF family CS348_18625 PF02321 Outer membrane efflux protein CS348_18645 PF13505 Outer membrane protein beta-barrel domain CS348_18660 PF00563 EAL domain CS348_18660 PF12792 CSS motif domain associated with EAL CS348_18690 PF16970 Type-1 fimbrial protein, A CS348_18695 PF02753 Pili assembly chaperone PapD, C-terminal domain CS348_18695 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CS348_18700 PF00577 Outer membrane usher protein CS348_18700 PF13953 PapC C-terminal domain CS348_18700 PF13954 PapC N-terminal domain CS348_18710 PF02753 Pili assembly chaperone PapD, C-terminal domain CS348_18710 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CS348_18725 PF00171 Aldehyde dehydrogenase family CS348_18730 PF00696 Amino acid kinase family CS348_18730 PF01472 PUA domain CS348_18735 PF00267 Gram-negative porin CS348_18740 PF07417 Sigma factor-binding transcriptional regulator Crl CS348_18745 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) CS348_18750 PF00156 Phosphoribosyl transferase domain CS348_18755 PF07687 Peptidase dimerisation domain CS348_18755 PF01546 Peptidase family M20/M25/M40 CS348_18760 PF00472 RF-1 domain CS348_18770 PF11799 impB/mucB/samB family C-terminal domain CS348_18770 PF11798 IMS family HHH motif CS348_18770 PF00817 impB/mucB/samB family CS348_18775 PF03734 L,D-transpeptidase catalytic domain CS348_18780 PF13230 Glutamine amidotransferases class-II CS348_18785 PF13580 SIS domain CS348_18790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CS348_18790 PF02770 Acyl-CoA dehydrogenase, middle domain CS348_18790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CS348_18790 PF09317 Domain of unknown function (DUF1974) CS348_18795 PF00795 Carbon-nitrogen hydrolase CS348_18810 PF13505 Outer membrane protein beta-barrel domain CS348_18830 PF13404 AsnC-type helix-turn-helix domain CS348_18830 PF01037 Lrp/AsnC ligand binding domain CS348_18845 PF00145 C-5 cytosine-specific DNA methylase CS348_18870 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CS348_18890 PF04865 Baseplate J-like protein CS348_18900 PF06890 Bacteriophage Mu Gp45 protein CS348_18910 PF07157 DNA circularisation protein N-terminus CS348_18935 PF10431 C-terminal, D2-small domain, of ClpB protein CS348_18935 PF00004 ATPase family associated with various cellular activities (AAA) CS348_18935 PF07724 AAA domain (Cdc48 subfamily) CS348_18935 PF17871 AAA lid domain CS348_18975 PF00929 Exonuclease CS348_18980 PF00075 RNase H CS348_18985 PF08241 Methyltransferase domain CS348_18990 PF00753 Metallo-beta-lactamase superfamily CS348_18990 PF16123 Hydroxyacylglutathione hydrolase C-terminus CS348_18995 PF01476 LysM domain CS348_18995 PF01464 Transglycosylase SLT domain CS348_19000 PF08241 Methyltransferase domain CS348_19005 PF03372 Endonuclease/Exonuclease/phosphatase family CS348_19010 PF07690 Major Facilitator Superfamily CS348_19015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_19015 PF03466 LysR substrate binding domain CS348_19020 PF00248 Aldo/keto reductase family CS348_19060 PF00005 ABC transporter CS348_19060 PF09383 NIL domain CS348_19065 PF00528 Binding-protein-dependent transport system inner membrane component CS348_19070 PF03180 NLPA lipoprotein CS348_19075 PF16358 RcsF lipoprotein CS348_19080 PF01980 tRNA-methyltransferase O CS348_19080 PF18389 TrmO C-terminal domain CS348_19085 PF04073 Aminoacyl-tRNA editing domain CS348_19085 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CS348_19085 PF03129 Anticodon binding domain CS348_19090 PF04170 NlpE N-terminal domain CS348_19090 PF17185 NlpE C-terminal OB domain CS348_19095 PF00472 RF-1 domain CS348_19100 PF07152 YaeQ protein CS348_19105 PF06786 Uncharacterised protein family (UPF0253) CS348_19110 PF07073 Modulator of Rho-dependent transcription termination (ROF) CS348_19115 PF11734 TilS substrate C-terminal domain CS348_19115 PF09179 TilS substrate binding domain CS348_19115 PF01171 PP-loop family CS348_19120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CS348_19135 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CS348_19140 PF02811 PHP domain CS348_19140 PF14579 Helix-hairpin-helix motif CS348_19140 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CS348_19140 PF07733 Bacterial DNA polymerase III alpha NTPase domain CS348_19140 PF01336 OB-fold nucleic acid binding domain CS348_19145 PF01351 Ribonuclease HII CS348_19150 PF02684 Lipid-A-disaccharide synthetase CS348_19155 PF00132 Bacterial transferase hexapeptide (six repeats) CS348_19155 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CS348_19160 PF07977 FabA-like domain CS348_19165 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CS348_19165 PF00132 Bacterial transferase hexapeptide (six repeats) CS348_19170 PF03938 Outer membrane protein (OmpH-like) CS348_19175 PF07244 Surface antigen variable number repeat CS348_19175 PF01103 Surface antigen CS348_19180 PF02163 Peptidase family M50 CS348_19180 PF17820 PDZ domain CS348_19190 PF01255 Putative undecaprenyl diphosphate synthase CS348_19200 PF13288 DXP reductoisomerase C-terminal domain CS348_19200 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CS348_19200 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CS348_19205 PF01765 Ribosome recycling factor CS348_19210 PF00696 Amino acid kinase family CS348_19215 PF00889 Elongation factor TS CS348_19225 PF00318 Ribosomal protein S2 CS348_19235 PF00557 Metallopeptidase family M24 CS348_19245 PF01842 ACT domain CS348_19245 PF08335 GlnD PII-uridylyltransferase CS348_19245 PF01966 HD domain CS348_19245 PF01909 Nucleotidyltransferase domain CS348_19250 PF14602 Hexapeptide repeat of succinyl-transferase CS348_19250 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CS348_19250 PF00132 Bacterial transferase hexapeptide (six repeats) CS348_19255 PF00083 Sugar (and other) transporter CS348_19255 PF07690 Major Facilitator Superfamily CS348_19260 PF11944 Protein of unknown function (DUF3461) CS348_19270 PF05651 Putative sugar diacid recognition CS348_19270 PF13556 PucR C-terminal helix-turn-helix domain CS348_19270 PF17853 GGDEF-like domain CS348_19275 PF00595 PDZ domain CS348_19280 PF01966 HD domain CS348_19280 PF13286 Phosphohydrolase-associated domain CS348_19285 PF01048 Phosphorylase superfamily CS348_19290 PF01497 Periplasmic binding protein CS348_19295 PF03458 UPF0126 domain CS348_19300 PF01521 Iron-sulphur cluster biosynthesis CS348_19305 PF00654 Voltage gated chloride channel CS348_19310 PF00202 Aminotransferase class-III CS348_19315 PF01032 FecCD transport family CS348_19320 PF01497 Periplasmic binding protein CS348_19325 PF00005 ABC transporter CS348_19330 PF07715 TonB-dependent Receptor Plug Domain CS348_19330 PF00593 TonB dependent receptor CS348_19335 PF00905 Penicillin binding protein transpeptidase domain CS348_19335 PF14814 Bifunctional transglycosylase second domain CS348_19335 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CS348_19335 PF00912 Transglycosylase CS348_19340 PF00270 DEAD/DEAH box helicase CS348_19340 PF04408 Helicase associated domain (HA2) CS348_19340 PF00271 Helicase conserved C-terminal domain CS348_19340 PF08482 ATP-dependent helicase C-terminal CS348_19345 PF02834 LigT like Phosphoesterase CS348_19350 PF17746 SfsA N-terminal OB domain CS348_19350 PF03749 Sugar fermentation stimulation protein RE domain CS348_19355 PF01258 Prokaryotic dksA/traR C4-type zinc finger CS348_19360 PF00749 tRNA synthetases class I (E and Q), catalytic domain CS348_19365 PF01743 Poly A polymerase head domain CS348_19365 PF12626 Polymerase A arginine-rich C-terminus CS348_19365 PF12627 Probable RNA and SrmB- binding site of polymerase A CS348_19370 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CS348_19380 PF02753 Pili assembly chaperone PapD, C-terminal domain CS348_19380 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CS348_19385 PF00577 Outer membrane usher protein CS348_19385 PF13953 PapC C-terminal domain CS348_19385 PF13954 PapC N-terminal domain CS348_19390 PF00419 Fimbrial protein CS348_19395 PF00419 Fimbrial protein CS348_19400 PF00419 Fimbrial protein CS348_19405 PF00419 Fimbrial protein CS348_19410 PF02548 Ketopantoate hydroxymethyltransferase CS348_19415 PF02569 Pantoate-beta-alanine ligase CS348_19425 PF02261 Aspartate decarboxylase CS348_19430 PF01522 Polysaccharide deacetylase CS348_19435 PF03610 PTS system fructose IIA component CS348_19445 PF02753 Pili assembly chaperone PapD, C-terminal domain CS348_19445 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CS348_19450 PF13953 PapC C-terminal domain CS348_19450 PF00577 Outer membrane usher protein CS348_19450 PF13954 PapC N-terminal domain CS348_19455 PF01061 ABC-2 type transporter CS348_19460 PF00005 ABC transporter CS348_19465 PF00484 Carbonic anhydrase CS348_19470 PF00156 Phosphoribosyl transferase domain CS348_19475 PF01011 PQQ enzyme repeat CS348_19480 PF07731 Multicopper oxidase CS348_19480 PF07732 Multicopper oxidase CS348_19480 PF00394 Multicopper oxidase CS348_19485 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CS348_19490 PF17284 Spermidine synthase tetramerisation domain CS348_19495 PF02675 S-adenosylmethionine decarboxylase CS348_19500 PF08220 DeoR-like helix-turn-helix domain CS348_19500 PF00455 DeoR C terminal sensor domain CS348_19505 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CS348_19510 PF07005 Sugar-binding N-terminal domain CS348_19510 PF17042 Nucleotide-binding C-terminal domain CS348_19520 PF06062 Uncharacterised protein family (UPF0231) CS348_19525 PF00330 Aconitase family (aconitate hydratase) CS348_19525 PF11791 Aconitate B N-terminal domain CS348_19525 PF06434 Aconitate hydratase 2 N-terminus CS348_19530 PF11737 Protein of unknown function (DUF3300) CS348_19545 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CS348_19545 PF07992 Pyridine nucleotide-disulphide oxidoreductase CS348_19550 PF02817 e3 binding domain CS348_19550 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CS348_19550 PF00364 Biotin-requiring enzyme CS348_19555 PF00456 Transketolase, thiamine diphosphate binding domain CS348_19555 PF17831 Pyruvate dehydrogenase E1 component middle domain CS348_19565 PF00392 Bacterial regulatory proteins, gntR family CS348_19565 PF07729 FCD domain CS348_19570 PF00324 Amino acid permease CS348_19580 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain CS348_19580 PF04616 Glycosyl hydrolases family 43 CS348_19585 PF17113 Regulatory signalling modulator protein AmpE CS348_19590 PF01510 N-acetylmuramoyl-L-alanine amidase CS348_19595 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CS348_19595 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CS348_19605 PF07963 Prokaryotic N-terminal methylation motif CS348_19610 PF00437 Type II/IV secretion system protein CS348_19610 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CS348_19615 PF00482 Type II secretion system (T2SS), protein F CS348_19620 PF00478 IMP dehydrogenase / GMP reductase domain CS348_19625 PF01121 Dephospho-CoA kinase CS348_19630 PF07072 Cell division protein CS348_19635 PF03884 DNA gyrase inhibitor YacG CS348_19650 PF00293 NUDIX domain CS348_19655 PF07517 SecA DEAD-like domain CS348_19655 PF01043 SecA preprotein cross-linking domain CS348_19655 PF07516 SecA Wing and Scaffold domain CS348_19655 PF02810 SEC-C motif CS348_19660 PF06558 Secretion monitor precursor protein (SecM) CS348_19665 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CS348_19670 PF00091 Tubulin/FtsZ family, GTPase domain CS348_19670 PF12327 FtsZ family, C-terminal domain CS348_19675 PF02491 SHS2 domain inserted in FTSA CS348_19680 PF08478 POTRA domain, FtsQ-type CS348_19680 PF03799 Cell division protein FtsQ CS348_19685 PF07478 D-ala D-ala ligase C-terminus CS348_19685 PF01820 D-ala D-ala ligase N-terminus CS348_19690 PF01225 Mur ligase family, catalytic domain CS348_19690 PF02875 Mur ligase family, glutamate ligase domain CS348_19690 PF08245 Mur ligase middle domain CS348_19695 PF03033 Glycosyltransferase family 28 N-terminal domain CS348_19695 PF04101 Glycosyltransferase family 28 C-terminal domain CS348_19700 PF01098 Cell cycle protein CS348_19705 PF08245 Mur ligase middle domain CS348_19705 PF02875 Mur ligase family, glutamate ligase domain CS348_19710 PF00953 Glycosyl transferase family 4 CS348_19710 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CS348_19715 PF08245 Mur ligase middle domain CS348_19715 PF02875 Mur ligase family, glutamate ligase domain CS348_19715 PF01225 Mur ligase family, catalytic domain CS348_19720 PF08245 Mur ligase middle domain CS348_19720 PF02875 Mur ligase family, glutamate ligase domain CS348_19720 PF01225 Mur ligase family, catalytic domain CS348_19725 PF00905 Penicillin binding protein transpeptidase domain CS348_19725 PF03717 Penicillin-binding Protein dimerisation domain CS348_19730 PF04999 Cell division protein FtsL CS348_19735 PF01795 MraW methylase family CS348_19740 PF02381 MraZ protein, putative antitoxin-like CS348_19745 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CS348_19745 PF00356 Bacterial regulatory proteins, lacI family CS348_19750 PF10369 Small subunit of acetolactate synthase CS348_19755 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CS348_19755 PF00205 Thiamine pyrophosphate enzyme, central domain CS348_19755 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CS348_19760 PF03466 LysR substrate binding domain CS348_19760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_19765 PF08054 Leucine operon leader peptide CS348_19770 PF08502 LeuA allosteric (dimerisation) domain CS348_19770 PF00682 HMGL-like CS348_19775 PF00180 Isocitrate/isopropylmalate dehydrogenase CS348_19780 PF00330 Aconitase family (aconitate hydratase) CS348_19785 PF00694 Aconitase C-terminal domain CS348_19795 PF12793 Sugar transport-related sRNA regulator N-term CS348_19795 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CS348_19805 PF00528 Binding-protein-dependent transport system inner membrane component CS348_19810 PF00005 ABC transporter CS348_19815 PF09335 SNARE associated Golgi protein CS348_19820 PF02311 AraC-like ligand binding domain CS348_19820 PF12833 Helix-turn-helix domain CS348_19825 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CS348_19830 PF11762 L-arabinose isomerase C-terminal domain CS348_19830 PF02610 L-arabinose isomerase CS348_19835 PF00596 Class II Aldolase and Adducin N-terminal domain CS348_19855 PF00136 DNA polymerase family B CS348_19855 PF03104 DNA polymerase family B, exonuclease domain CS348_19860 PF18339 RapA N-terminal Tudor like domain 1 CS348_19860 PF00271 Helicase conserved C-terminal domain CS348_19860 PF12137 RNA polymerase recycling family C-terminal CS348_19860 PF18337 RapA N-terminal Tudor like domain CS348_19860 PF00176 SNF2 family N-terminal domain CS348_19865 PF00849 RNA pseudouridylate synthase CS348_19870 PF00226 DnaJ domain CS348_19870 PF05099 Tellurite resistance protein TerB CS348_19875 PF03968 OstA-like protein CS348_19875 PF04453 LPS transport system D CS348_19880 PF00639 PPIC-type PPIASE domain CS348_19880 PF09312 SurA N-terminal domain CS348_19885 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CS348_19890 PF00398 Ribosomal RNA adenine dimethylase CS348_19895 PF04379 ApaG domain CS348_19900 PF00149 Calcineurin-like phosphoesterase CS348_19905 PF00186 Dihydrofolate reductase CS348_19910 PF00999 Sodium/hydrogen exchanger family CS348_19910 PF02254 TrkA-N domain CS348_19915 PF02525 Flavodoxin-like fold CS348_19955 PF06004 Bacterial protein of unknown function (DUF903) CS348_19960 PF00083 Sugar (and other) transporter CS348_19970 PF01494 FAD binding domain CS348_19975 PF01012 Electron transfer flavoprotein domain CS348_19975 PF00766 Electron transfer flavoprotein FAD-binding domain CS348_19980 PF01012 Electron transfer flavoprotein domain CS348_19990 PF02028 BCCT, betaine/carnitine/choline family transporter CS348_19995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CS348_19995 PF02770 Acyl-CoA dehydrogenase, middle domain CS348_19995 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CS348_20000 PF02515 CoA-transferase family III CS348_20005 PF00501 AMP-binding enzyme CS348_20005 PF13193 AMP-binding enzyme C-terminal domain CS348_20010 PF00378 Enoyl-CoA hydratase/isomerase CS348_20015 PF00132 Bacterial transferase hexapeptide (six repeats) CS348_20020 PF07180 CaiF/GrlA transcriptional regulator CS348_20025 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CS348_20025 PF02142 MGS-like domain CS348_20025 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CS348_20030 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CS348_20030 PF00117 Glutamine amidotransferase class-I CS348_20040 PF05173 Dihydrodipicolinate reductase, C-terminus CS348_20040 PF01113 Dihydrodipicolinate reductase, N-terminus CS348_20045 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CS348_20050 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CS348_20055 PF04223 Citrate lyase, alpha subunit (CitF) CS348_20060 PF03328 HpcH/HpaI aldolase/citrate lyase family CS348_20065 PF06857 Malonate decarboxylase delta subunit (MdcD) CS348_20070 PF00583 Acetyltransferase (GNAT) family CS348_20070 PF08218 Citrate lyase ligase C-terminal domain CS348_20075 PF03390 2-hydroxycarboxylate transporter family CS348_20080 PF04277 Oxaloacetate decarboxylase, gamma chain CS348_20085 PF00682 HMGL-like CS348_20085 PF00364 Biotin-requiring enzyme CS348_20085 PF02436 Conserved carboxylase domain CS348_20090 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CS348_20095 PF17203 Single cache domain 3 CS348_20095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_20100 PF00072 Response regulator receiver domain CS348_20100 PF12431 Transcriptional regulator CS348_20105 PF01156 Inosine-uridine preferring nucleoside hydrolase CS348_20115 PF02401 LytB protein CS348_20120 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CS348_20125 PF01252 Signal peptidase (SPase) II CS348_20130 PF08264 Anticodon-binding domain of tRNA CS348_20130 PF00133 tRNA synthetases class I (I, L, M and V) CS348_20130 PF06827 Zinc finger found in FPG and IleRS CS348_20135 PF01687 Riboflavin kinase CS348_20135 PF06574 FAD synthetase CS348_20140 PF10837 Protein of unknown function (DUF2575) CS348_20145 PF01649 Ribosomal protein S20 CS348_20160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_20160 PF03466 LysR substrate binding domain CS348_20165 PF06965 Na+/H+ antiporter 1 CS348_20180 PF04055 Radical SAM superfamily CS348_20180 PF13186 Iron-sulfur cluster-binding domain CS348_20185 PF00884 Sulfatase CS348_20185 PF16385 Domain of unknown function CS348_20195 PF02872 5'-nucleotidase, C-terminal domain CS348_20195 PF00149 Calcineurin-like phosphoesterase CS348_20210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_20210 PF03466 LysR substrate binding domain CS348_20230 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CS348_20230 PF02753 Pili assembly chaperone PapD, C-terminal domain CS348_20235 PF16970 Type-1 fimbrial protein, A CS348_20240 PF00419 Fimbrial protein CS348_20245 PF00419 Fimbrial protein CS348_20250 PF00577 Outer membrane usher protein CS348_20250 PF13954 PapC N-terminal domain CS348_20250 PF13953 PapC C-terminal domain CS348_20255 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CS348_20255 PF02753 Pili assembly chaperone PapD, C-terminal domain CS348_20260 PF00419 Fimbrial protein CS348_20275 PF00704 Glycosyl hydrolases family 18 CS348_20295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_20295 PF03466 LysR substrate binding domain CS348_20300 PF01556 DnaJ C terminal domain CS348_20300 PF00684 DnaJ central domain CS348_20300 PF00226 DnaJ domain CS348_20305 PF00012 Hsp70 protein CS348_20310 PF10807 Protein of unknown function (DUF2541) CS348_20315 PF13099 Domain of unknown function (DUF3944) CS348_20315 PF03981 Ubiquinol-cytochrome C chaperone CS348_20320 PF01184 GPR1/FUN34/yaaH family CS348_20325 PF00994 Probable molybdopterin binding domain CS348_20330 PF00923 Transaldolase/Fructose-6-phosphate aldolase CS348_20335 PF01235 Sodium:alanine symporter family CS348_20340 PF03883 Peroxide stress protein YaaA CS348_20345 PF14821 Threonine synthase N terminus CS348_20345 PF00291 Pyridoxal-phosphate dependent enzyme CS348_20350 PF08544 GHMP kinases C terminal CS348_20350 PF00288 GHMP kinases N terminal domain CS348_20355 PF03447 Homoserine dehydrogenase, NAD binding domain CS348_20355 PF00696 Amino acid kinase family CS348_20355 PF00742 Homoserine dehydrogenase CS348_20355 PF13840 ACT domain CS348_20355 PF01842 ACT domain CS348_20360 PF08254 Threonine leader peptide CS348_20365 PF00588 SpoU rRNA Methylase family CS348_20375 PF00072 Response regulator receiver domain CS348_20375 PF00486 Transcriptional regulatory protein, C terminal CS348_20385 PF15977 Winged helix-turn-helix DNA binding CS348_20395 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CS348_20395 PF02753 Pili assembly chaperone PapD, C-terminal domain CS348_20415 PF06123 Inner membrane protein CreD CS348_20420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_20420 PF00672 HAMP domain CS348_20420 PF00512 His Kinase A (phospho-acceptor) domain CS348_20425 PF00072 Response regulator receiver domain CS348_20425 PF00486 Transcriptional regulatory protein, C terminal CS348_20430 PF05981 CreA protein CS348_20435 PF12833 Helix-turn-helix domain CS348_20435 PF06445 GyrI-like small molecule binding domain CS348_20440 PF00300 Histidine phosphatase superfamily (branch 1) CS348_20445 PF01931 Protein of unknown function DUF84 CS348_20450 PF01371 Trp repressor protein CS348_20455 PF14718 Soluble lytic murein transglycosylase L domain CS348_20455 PF01464 Transglycosylase SLT domain CS348_20465 PF00005 ABC transporter CS348_20465 PF12848 ABC transporter CS348_20470 PF13521 AAA domain CS348_20470 PF01381 Helix-turn-helix CS348_20475 PF18073 Rubredoxin metal binding domain CS348_20480 PF18429 Domain of unknown function (DUF5609) CS348_20490 PF10144 Bacterial virulence factor haemolysin CS348_20495 PF03099 Biotin/lipoate A/B protein ligase family CS348_20495 PF10437 Bacterial lipoate protein ligase C-terminus CS348_20505 PF06551 Protein of unknown function (DUF1120) CS348_20510 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CS348_20520 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CS348_20630 PF04233 Phage Mu protein F like protein CS348_20640 PF03237 Terminase-like family CS348_20720 PF01471 Putative peptidoglycan binding domain CS348_20720 PF13401 AAA domain CS348_20770 PF08765 Mor transcription activator family CS348_20785 PF01048 Phosphorylase superfamily CS348_20790 PF01676 Metalloenzyme superfamily CS348_20795 PF02885 Glycosyl transferase family, helical bundle domain CS348_20795 PF00591 Glycosyl transferase family, a/b domain CS348_20795 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CS348_20800 PF01791 DeoC/LacD family aldolase CS348_20805 PF11230 Protein of unknown function (DUF3029) CS348_20810 PF04055 Radical SAM superfamily CS348_20815 PF01026 TatD related DNase CS348_20820 PF01734 Patatin-like phospholipase CS348_20825 PF07043 Protein of unknown function (DUF1328) CS348_20830 PF04972 BON domain CS348_20835 PF03144 Elongation factor Tu domain 2 CS348_20835 PF16658 Class II release factor RF3, C-terminal domain CS348_20835 PF00009 Elongation factor Tu GTP binding domain CS348_20840 PF13419 Haloacid dehalogenase-like hydrolase CS348_20845 PF00583 Acetyltransferase (GNAT) family CS348_20850 PF03603 DNA polymerase III psi subunit CS348_20855 PF05175 Methyltransferase small domain CS348_20855 PF08468 Methyltransferase small domain N-terminal CS348_20875 PF07256 Protein of unknown function (DUF1435) CS348_20880 PF05230 MASE2 domain CS348_20880 PF00990 Diguanylate cyclase, GGDEF domain CS348_20885 PF11575 FhuF 2Fe-2S C-terminal domain CS348_20885 PF06276 Ferric iron reductase FhuF-like transporter CS348_20890 PF04073 Aminoacyl-tRNA editing domain CS348_20895 PF00196 Bacterial regulatory proteins, luxR family CS348_20900 PF00196 Bacterial regulatory proteins, luxR family CS348_20905 PF06738 Putative threonine/serine exporter CS348_20910 PF12821 Threonine/Serine exporter, ThrE CS348_20915 PF17948 DnaT DNA-binding domain CS348_20920 PF01695 IstB-like ATP binding protein CS348_20925 PF10696 Protein of unknown function (DUF2501) CS348_20930 PF00884 Sulfatase CS348_20935 PF01380 SIS domain CS348_20940 PF01380 SIS domain CS348_20945 PF03613 PTS system mannose/fructose/sorbose family IID component CS348_20950 PF03609 PTS system sorbose-specific iic component CS348_20955 PF03830 PTS system sorbose subfamily IIB component CS348_20965 PF00158 Sigma-54 interaction domain CS348_20965 PF00874 PRD domain CS348_20970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CS348_20970 PF02203 Tar ligand binding domain homologue CS348_20970 PF00672 HAMP domain CS348_20975 PF13722 5TM C-terminal transporter carbon starvation CstA CS348_20975 PF02554 Carbon starvation protein CstA CS348_20980 PF04328 Selenoprotein, putative CS348_20985 PF07683 Cobalamin synthesis protein cobW C-terminal domain CS348_20985 PF02492 CobW/HypB/UreG, nucleotide-binding domain CS348_20990 PF12833 Helix-turn-helix domain CS348_20990 PF02311 AraC-like ligand binding domain CS348_20995 PF01810 LysE type translocator CS348_21015 PF00171 Aldehyde dehydrogenase family CS348_21020 PF04754 Putative transposase, YhgA-like CS348_21025 PF07690 Major Facilitator Superfamily CS348_21030 PF04286 Protein of unknown function (DUF445) CS348_21035 PF06779 Uncharacterised MFS-type transporter YbfB CS348_21040 PF07670 Nucleoside recognition CS348_21045 PF07670 Nucleoside recognition CS348_21050 PF01979 Amidohydrolase family CS348_21055 PF03466 LysR substrate binding domain CS348_21055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_21060 PF01177 Asp/Glu/Hydantoin racemase CS348_21075 PF00579 tRNA synthetases class I (W and Y) CS348_21080 PF00392 Bacterial regulatory proteins, gntR family CS348_21080 PF07729 FCD domain CS348_21090 PF01738 Dienelactone hydrolase family CS348_21095 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CS348_21095 PF03625 Domain of unknown function DUF302 CS348_21115 PF09857 Putative toxin of bacterial toxin-antitoxin pair CS348_21120 PF13847 Methyltransferase domain CS348_21130 PF01709 Transcriptional regulator CS348_21145 PF12728 Helix-turn-helix domain CS348_21145 PF00145 C-5 cytosine-specific DNA methylase CS348_21150 PF09570 SinI restriction endonuclease CS348_21165 PF08240 Alcohol dehydrogenase GroES-like domain CS348_21165 PF00107 Zinc-binding dehydrogenase CS348_21170 PF01202 Shikimate kinase CS348_21175 PF08240 Alcohol dehydrogenase GroES-like domain CS348_21175 PF00107 Zinc-binding dehydrogenase CS348_21180 PF00106 short chain dehydrogenase CS348_21185 PF02447 GntP family permease CS348_21190 PF00356 Bacterial regulatory proteins, lacI family CS348_21195 PF03739 Lipopolysaccharide export system permease LptF/LptG CS348_21200 PF03739 Lipopolysaccharide export system permease LptF/LptG CS348_21215 PF02789 Cytosol aminopeptidase family, N-terminal domain CS348_21215 PF00883 Cytosol aminopeptidase family, catalytic domain CS348_21220 PF04364 DNA polymerase III chi subunit, HolC CS348_21225 PF08264 Anticodon-binding domain of tRNA CS348_21225 PF00133 tRNA synthetases class I (I, L, M and V) CS348_21225 PF10458 Valyl tRNA synthetase tRNA binding arm CS348_21230 PF05987 Bacterial protein of unknown function (DUF898) CS348_21235 PF00583 Acetyltransferase (GNAT) family CS348_21240 PF12276 Protein of unknown function (DUF3617) CS348_21245 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) CS348_21250 PF06877 Regulator of ribonuclease activity B CS348_21255 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CS348_21255 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CS348_21260 PF04074 YhcH/YjgK/YiaL CS348_21275 PF00696 Amino acid kinase family CS348_21280 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CS348_21280 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CS348_21285 PF03606 C4-dicarboxylate anaerobic carrier CS348_21290 PF02863 Arginine repressor, C-terminal domain CS348_21290 PF01316 Arginine repressor, DNA binding domain CS348_21300 PF08052 PyrBI operon leader peptide CS348_21305 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CS348_21305 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CS348_21310 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CS348_21310 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CS348_21315 PF01042 Endoribonuclease L-PSP CS348_21325 PF00690 Cation transporter/ATPase, N-terminus CS348_21325 PF00689 Cation transporting ATPase, C-terminus CS348_21330 PF00356 Bacterial regulatory proteins, lacI family CS348_21335 PF00367 phosphotransferase system, EIIB CS348_21335 PF02378 Phosphotransferase system, EIIC CS348_21340 PF11941 Domain of unknown function (DUF3459) CS348_21340 PF00128 Alpha amylase, catalytic domain CS348_21345 PF13597 Anaerobic ribonucleoside-triphosphate reductase CS348_21345 PF03477 ATP cone domain CS348_21355 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CS348_21360 PF04221 RelB antitoxin CS348_21365 PF08279 HTH domain CS348_21365 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CS348_21365 PF05043 Mga helix-turn-helix domain CS348_21365 PF00874 PRD domain CS348_21370 PF07071 KDGP aldolase CS348_21375 PF03841 L-seryl-tRNA selenium transferase CS348_21380 PF01979 Amidohydrolase family CS348_21410 PF07361 Cytochrome b562 CS348_21415 PF01523 Putative modulator of DNA gyrase CS348_21420 PF04751 Protein of unknown function (DUF615) CS348_21425 PF01261 Xylose isomerase-like TIM barrel CS348_21435 PF07690 Major Facilitator Superfamily CS348_21440 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CS348_21440 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CS348_21445 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CS348_21445 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CS348_21445 PF00205 Thiamine pyrophosphate enzyme, central domain CS348_21450 PF00294 pfkB family carbohydrate kinase CS348_21455 PF07690 Major Facilitator Superfamily CS348_21460 PF01261 Xylose isomerase-like TIM barrel CS348_21465 PF17189 Glycosyl hydrolase family 30 beta sandwich domain CS348_21470 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CS348_21470 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CS348_21475 PF01261 Xylose isomerase-like TIM barrel CS348_21490 PF00171 Aldehyde dehydrogenase family CS348_21495 PF04962 KduI/IolB family CS348_21500 PF00083 Sugar (and other) transporter CS348_21510 PF00083 Sugar (and other) transporter CS348_21515 PF02685 Glucokinase CS348_21515 PF01380 SIS domain CS348_21515 PF01418 Helix-turn-helix domain, rpiR family CS348_21525 PF01225 Mur ligase family, catalytic domain CS348_21525 PF02875 Mur ligase family, glutamate ligase domain CS348_21525 PF08245 Mur ligase middle domain CS348_21530 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CS348_21535 PF00719 Inorganic pyrophosphatase CS348_21540 PF01979 Amidohydrolase family CS348_21545 PF07690 Major Facilitator Superfamily CS348_21550 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CS348_21555 PF04357 TamB, inner membrane protein subunit of TAM complex CS348_21560 PF07244 Surface antigen variable number repeat CS348_21560 PF01103 Surface antigen CS348_21560 PF17243 POTRA domain TamA domain 1 CS348_21565 PF01625 Peptide methionine sulfoxide reductase CS348_21570 PF03471 Transporter associated domain CS348_21570 PF01595 Cyclin M transmembrane N-terminal domain CS348_21570 PF00571 CBS domain CS348_21575 PF06526 Protein of unknown function (DUF1107) CS348_21585 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CS348_21590 PF00459 Inositol monophosphatase family CS348_21600 PF02872 5'-nucleotidase, C-terminal domain CS348_21600 PF00149 Calcineurin-like phosphoesterase CS348_21605 PF01638 HxlR-like helix-turn-helix CS348_21610 PF05368 NmrA-like family CS348_21615 PF00892 EamA-like transporter family CS348_21620 PF04405 Domain of Unknown function (DUF542) CS348_21620 PF01814 Hemerythrin HHE cation binding domain CS348_21625 PF00324 Amino acid permease CS348_21630 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CS348_21630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CS348_21635 PF04225 Opacity-associated protein A LysM-like domain CS348_21635 PF08525 Opacity-associated protein A N-terminal motif CS348_21645 PF01281 Ribosomal protein L9, N-terminal domain CS348_21645 PF03948 Ribosomal protein L9, C-terminal domain CS348_21650 PF01084 Ribosomal protein S18 CS348_21655 PF00436 Single-strand binding protein family CS348_21660 PF01250 Ribosomal protein S6 CS348_21670 PF07338 Protein of unknown function (DUF1471) CS348_21675 PF07274 Protein of unknown function (DUF1440) CS348_21680 PF00596 Class II Aldolase and Adducin N-terminal domain CS348_21685 PF01261 Xylose isomerase-like TIM barrel CS348_21690 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CS348_21695 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CS348_21700 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CS348_21705 PF03611 PTS system sugar-specific permease component CS348_21715 PF00455 DeoR C terminal sensor domain CS348_21715 PF08220 DeoR-like helix-turn-helix domain CS348_21720 PF00326 Prolyl oligopeptidase family CS348_21725 PF07338 Protein of unknown function (DUF1471) CS348_21730 PF07338 Protein of unknown function (DUF1471) CS348_21735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CS348_21735 PF02770 Acyl-CoA dehydrogenase, middle domain CS348_21735 PF18158 Adaptive response protein AidB N-terminal domain CS348_21740 PF03738 Glutathionylspermidine synthase preATP-grasp CS348_21745 PF06693 Protein of unknown function (DUF1190) CS348_21750 PF03994 Domain of Unknown Function (DUF350) CS348_21755 PF10679 Protein of unknown function (DUF2491) CS348_21760 PF04012 PspA/IM30 family CS348_21765 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) CS348_21770 PF08032 RNA 2'-O ribose methyltransferase substrate binding CS348_21770 PF00588 SpoU rRNA Methylase family CS348_21775 PF08206 Ribonuclease B OB domain CS348_21775 PF08461 Ribonuclease R winged-helix domain CS348_21775 PF00575 S1 RNA binding domain CS348_21775 PF00773 RNB domain CS348_21775 PF17876 Cold shock domain CS348_21780 PF02082 Transcriptional regulator CS348_21790 PF00709 Adenylosuccinate synthetase CS348_21795 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CS348_21800 PF01145 SPFH domain / Band 7 family CS348_21805 PF01145 SPFH domain / Band 7 family CS348_21805 PF12221 Bacterial membrane protein N terminal CS348_21810 PF16360 GTP-binding GTPase Middle Region CS348_21810 PF01926 50S ribosome-binding GTPase CS348_21810 PF13167 GTP-binding GTPase N-terminal CS348_21815 PF17209 Hfq protein CS348_21825 PF08676 MutL C terminal dimerisation domain CS348_21825 PF01119 DNA mismatch repair protein, C-terminal domain CS348_21830 PF01520 N-acetylmuramoyl-L-alanine amidase CS348_21835 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CS348_21840 PF03853 YjeF-related protein N-terminus CS348_21840 PF01256 Carbohydrate kinase CS348_21845 PF08331 Domain of unknown function (DUF1730) CS348_21865 PF00497 Bacterial extracellular solute-binding proteins, family 3 CS348_21870 PF00929 Exonuclease CS348_21875 PF03193 RsgA GTPase CS348_21880 PF02666 Phosphatidylserine decarboxylase CS348_21885 PF12794 Mechanosensitive ion channel inner membrane domain 1 CS348_21885 PF00924 Mechanosensitive ion channel CS348_21885 PF12795 Mechanosensitive ion channel porin domain CS348_21890 PF13520 Amino acid permease CS348_21895 PF00152 tRNA synthetases class II (D, K and N) CS348_21900 PF00890 FAD binding domain CS348_21900 PF02910 Fumarate reductase flavoprotein C-term CS348_21905 PF13085 2Fe-2S iron-sulfur cluster binding domain CS348_21905 PF13183 4Fe-4S dicluster domain CS348_21910 PF02300 Fumarate reductase subunit C CS348_21915 PF02313 Fumarate reductase subunit D CS348_21920 PF08212 Lipocalin-like domain CS348_21925 PF00893 Small Multidrug Resistance protein CS348_21930 PF00196 Bacterial regulatory proteins, luxR family CS348_21935 PF08085 Entericidin EcnA/B family CS348_21940 PF08085 Entericidin EcnA/B family CS348_21945 PF09285 Elongation factor P, C-terminal CS348_21945 PF08207 Elongation factor P (EF-P) KOW-like domain CS348_21945 PF01132 Elongation factor P (EF-P) OB domain CS348_21950 PF04055 Radical SAM superfamily CS348_21955 PF15922 YjeJ-like CS348_21960 PF13698 Domain of unknown function (DUF4156) CS348_21965 PF00118 TCP-1/cpn60 chaperonin family CS348_21970 PF00166 Chaperonin 10 Kd subunit CS348_21975 PF13520 Amino acid permease CS348_21980 PF04186 FxsA cytoplasmic membrane protein CS348_21985 PF00206 Lyase CS348_21985 PF10415 Fumarase C C-terminus CS348_21990 PF03605 Anaerobic c4-dicarboxylate membrane transporter CS348_21995 PF03091 CutA1 divalent ion tolerance protein CS348_22000 PF11412 Disulphide bond corrector protein DsbC CS348_22000 PF02683 Cytochrome C biogenesis protein transmembrane region CS348_22020 PF01569 PAP2 superfamily CS348_22025 PF06977 SdiA-regulated CS348_22050 PF02432 Fimbrial, major and minor subunit CS348_22060 PF17547 Family of unknown function (DUF5462) CS348_22065 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CS348_22070 PF13954 PapC N-terminal domain CS348_22070 PF00577 Outer membrane usher protein CS348_22080 PF03333 Adhesin biosynthesis transcription regulatory protein CS348_22105 PF12833 Helix-turn-helix domain CS348_22110 PF00196 Bacterial regulatory proteins, luxR family CS348_22110 PF00072 Response regulator receiver domain CS348_22120 PF06977 SdiA-regulated CS348_22130 PF02613 Nitrate reductase delta subunit CS348_22135 PF04976 DMSO reductase anchor subunit (DmsC) CS348_22140 PF13247 4Fe-4S dicluster domain CS348_22140 PF12800 4Fe-4S binding domain CS348_22145 PF01568 Molydopterin dinucleotide binding domain CS348_22145 PF00384 Molybdopterin oxidoreductase CS348_22145 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CS348_22150 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CS348_22150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_22150 PF00989 PAS fold CS348_22150 PF17203 Single cache domain 3 CS348_22155 PF00072 Response regulator receiver domain CS348_22165 PF03605 Anaerobic c4-dicarboxylate membrane transporter CS348_22170 PF05683 Fumarase C-terminus CS348_22170 PF05681 Fumarate hydratase (Fumerase) CS348_22180 PF02056 Family 4 glycosyl hydrolase CS348_22180 PF11975 Family 4 glycosyl hydrolase C-terminal domain CS348_22185 PF12833 Helix-turn-helix domain CS348_22190 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CS348_22190 PF01276 Orn/Lys/Arg decarboxylase, major domain CS348_22190 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CS348_22195 PF12833 Helix-turn-helix domain CS348_22200 PF13520 Amino acid permease CS348_22205 PF08019 Phosphoethanolamine transferase EptA/EptB CS348_22205 PF00884 Sulfatase CS348_22210 PF00486 Transcriptional regulatory protein, C terminal CS348_22210 PF00072 Response regulator receiver domain CS348_22215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_22215 PF00512 His Kinase A (phospho-acceptor) domain CS348_22225 PF00083 Sugar (and other) transporter CS348_22225 PF08946 Osmosensory transporter coiled coil CS348_22230 PF08274 PhnA Zinc-Ribbon CS348_22230 PF03831 PhnA domain CS348_22235 PF06983 3-demethylubiquinone-9 3-methyltransferase CS348_22240 PF00583 Acetyltransferase (GNAT) family CS348_22255 PF08238 Sel1 repeat CS348_22260 PF00375 Sodium:dicarboxylate symporter family CS348_22270 PF03918 Cytochrome C biogenesis protein CS348_22275 PF01578 Cytochrome C assembly protein CS348_22275 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CS348_22280 PF03916 Polysulphide reductase, NrfD CS348_22285 PF00037 4Fe-4S binding domain CS348_22285 PF13247 4Fe-4S dicluster domain CS348_22290 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) CS348_22290 PF13435 Cytochrome c554 and c-prime CS348_22295 PF02335 Cytochrome c552 CS348_22305 PF00501 AMP-binding enzyme CS348_22305 PF13193 AMP-binding enzyme C-terminal domain CS348_22305 PF16177 Acetyl-coenzyme A synthetase N-terminus CS348_22310 PF04341 Protein of unknown function, DUF485 CS348_22315 PF00474 Sodium:solute symporter family CS348_22320 PF04172 LrgB-like family CS348_22325 PF03788 LrgA family CS348_22330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_22330 PF03466 LysR substrate binding domain CS348_22335 PF00999 Sodium/hydrogen exchanger family CS348_22345 PF00860 Permease family CS348_22360 PF09278 MerR, DNA binding CS348_22360 PF00376 MerR family regulatory protein CS348_22365 PF12833 Helix-turn-helix domain CS348_22370 PF00563 EAL domain CS348_22370 PF12792 CSS motif domain associated with EAL CS348_22375 PF15940 Family of unknown function CS348_22380 PF00005 ABC transporter CS348_22380 PF00664 ABC transporter transmembrane region CS348_22415 PF00436 Single-strand binding protein family CS348_22425 PF00005 ABC transporter CS348_22425 PF17755 UvrA DNA-binding domain CS348_22425 PF17760 UvrA interaction domain CS348_22440 PF04237 YjbR CS348_22445 PF01894 Uncharacterised protein family UPF0047 CS348_22450 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CS348_22455 PF00155 Aminotransferase class I and II CS348_22460 PF00842 Alanine racemase, C-terminal domain CS348_22460 PF01168 Alanine racemase, N-terminal domain CS348_22465 PF03796 DnaB-like helicase C terminal domain CS348_22465 PF00772 DnaB-like helicase N terminal domain CS348_22470 PF08240 Alcohol dehydrogenase GroES-like domain CS348_22470 PF00107 Zinc-binding dehydrogenase CS348_22475 PF09583 Phage shock protein G (Phageshock_PspG) CS348_22480 PF01207 Dihydrouridine synthase (Dus) CS348_22490 PF01475 Ferric uptake regulator family CS348_22495 PF05532 CsbD-like CS348_22505 PF01554 MatE CS348_22510 PF00717 Peptidase S24-like CS348_22510 PF01726 LexA DNA binding domain CS348_22515 PF01219 Prokaryotic diacylglycerol kinase CS348_22520 PF01553 Acyltransferase CS348_22525 PF01040 UbiA prenyltransferase family CS348_22530 PF04345 Chorismate lyase CS348_22535 PF07148 Maltose operon periplasmic protein precursor (MalM) CS348_22540 PF02264 LamB porin CS348_22545 PF00005 ABC transporter CS348_22545 PF17912 MalK OB fold domain CS348_22550 PF01547 Bacterial extracellular solute-binding protein CS348_22555 PF14785 Maltose transport system permease protein MalF P2 domain CS348_22555 PF00528 Binding-protein-dependent transport system inner membrane component CS348_22560 PF00528 Binding-protein-dependent transport system inner membrane component CS348_22565 PF00083 Sugar (and other) transporter CS348_22570 PF06146 Phosphate-starvation-inducible E CS348_22575 PF06082 Exopolysaccharide biosynthesis protein YbjH CS348_22580 PF06251 Capsule biosynthesis GfcC CS348_22585 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF CS348_22595 PF00342 Phosphoglucose isomerase CS348_22600 PF01842 ACT domain CS348_22600 PF00696 Amino acid kinase family CS348_22625 PF00455 DeoR C terminal sensor domain CS348_22625 PF08220 DeoR-like helix-turn-helix domain CS348_22635 PF11656 YjbD family (DUF3811) CS348_22640 PF01479 S4 domain CS348_22640 PF00849 RNA pseudouridylate synthase CS348_22645 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CS348_22655 PF03575 Peptidase family S51 CS348_22660 PF02690 Na+/Pi-cotransporter CS348_22665 PF02574 Homocysteine S-methyltransferase CS348_22665 PF02310 B12 binding domain CS348_22665 PF00809 Pterin binding enzyme CS348_22665 PF02607 B12 binding domain CS348_22665 PF02965 Vitamin B12 dependent methionine synthase, activation domain CS348_22670 PF09339 IclR helix-turn-helix domain CS348_22670 PF01614 Bacterial transcriptional regulator CS348_22680 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CS348_22685 PF00463 Isocitrate lyase family CS348_22690 PF01274 Malate synthase CS348_22695 PF04204 Homoserine O-succinyltransferase CS348_22700 PF13673 Acetyltransferase (GNAT) domain CS348_22725 PF01808 AICARFT/IMPCHase bienzyme CS348_22725 PF02142 MGS-like domain CS348_22730 PF02844 Phosphoribosylglycinamide synthetase, N domain CS348_22730 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CS348_22730 PF02843 Phosphoribosylglycinamide synthetase, C domain CS348_22735 PF00072 Response regulator receiver domain CS348_22735 PF02954 Bacterial regulatory protein, Fis family CS348_22735 PF00158 Sigma-54 interaction domain CS348_22740 PF00512 His Kinase A (phospho-acceptor) domain CS348_22740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_22745 PF13801 Heavy-metal resistance CS348_22750 PF07356 Protein of unknown function (DUF1481) CS348_22755 PF00216 Bacterial DNA-binding protein CS348_22760 PF04222 Protein of unknown function (DUF416) CS348_22765 PF04493 Endonuclease V CS348_22770 PF01208 Uroporphyrinogen decarboxylase (URO-D) CS348_22775 PF00293 NUDIX domain CS348_22775 PF09297 NADH pyrophosphatase zinc ribbon domain CS348_22780 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CS348_22785 PF13667 ThiC-associated domain CS348_22785 PF01964 Radical SAM ThiC family CS348_22790 PF02581 Thiamine monophosphate synthase CS348_22795 PF00899 ThiF family CS348_22800 PF02597 ThiS family CS348_22805 PF05690 Thiazole biosynthesis protein ThiG CS348_22810 PF06968 Biotin and Thiamin Synthesis associated domain CS348_22810 PF04055 Radical SAM superfamily CS348_22830 PF04997 RNA polymerase Rpb1, domain 1 CS348_22830 PF00623 RNA polymerase Rpb1, domain 2 CS348_22830 PF04983 RNA polymerase Rpb1, domain 3 CS348_22830 PF05000 RNA polymerase Rpb1, domain 4 CS348_22830 PF04998 RNA polymerase Rpb1, domain 5 CS348_22835 PF10385 RNA polymerase beta subunit external 1 domain CS348_22835 PF04563 RNA polymerase beta subunit CS348_22835 PF04560 RNA polymerase Rpb2, domain 7 CS348_22835 PF04565 RNA polymerase Rpb2, domain 3 CS348_22835 PF00562 RNA polymerase Rpb2, domain 6 CS348_22835 PF04561 RNA polymerase Rpb2, domain 2 CS348_22840 PF16320 Ribosomal protein L7/L12 dimerisation domain CS348_22840 PF00542 Ribosomal protein L7/L12 C-terminal domain CS348_22845 PF00466 Ribosomal protein L10 CS348_22855 PF00687 Ribosomal protein L1p/L10e family CS348_22860 PF00298 Ribosomal protein L11, RNA binding domain CS348_22860 PF03946 Ribosomal protein L11, N-terminal domain CS348_22865 PF02357 Transcription termination factor nusG CS348_22865 PF00467 KOW motif CS348_22870 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CS348_22875 PF03144 Elongation factor Tu domain 2 CS348_22875 PF03143 Elongation factor Tu C-terminal domain CS348_22875 PF00009 Elongation factor Tu GTP binding domain CS348_22910 PF00485 Phosphoribulokinase / Uridine kinase family CS348_22915 PF02237 Biotin protein ligase C terminal domain CS348_22915 PF03099 Biotin/lipoate A/B protein ligase family CS348_22915 PF08279 HTH domain CS348_22920 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CS348_22920 PF01565 FAD binding domain CS348_22955 PF01177 Asp/Glu/Hydantoin racemase CS348_22960 PF00593 TonB dependent receptor CS348_22960 PF07715 TonB-dependent Receptor Plug Domain CS348_22965 PF05958 tRNA (Uracil-5-)-methyltransferase CS348_22970 PF07226 Protein of unknown function (DUF1422) CS348_22975 PF00440 Bacterial regulatory proteins, tetR family CS348_22985 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CS348_22985 PF07992 Pyridine nucleotide-disulphide oxidoreductase CS348_22990 PF03466 LysR substrate binding domain CS348_22990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_23000 PF00206 Lyase CS348_23000 PF14698 Argininosuccinate lyase C-terminal CS348_23005 PF00696 Amino acid kinase family CS348_23010 PF02774 Semialdehyde dehydrogenase, dimerisation domain CS348_23010 PF01118 Semialdehyde dehydrogenase, NAD binding domain CS348_23015 PF07687 Peptidase dimerisation domain CS348_23015 PF01546 Peptidase family M20/M25/M40 CS348_23025 PF00311 Phosphoenolpyruvate carboxylase CS348_23030 PF00884 Sulfatase CS348_23035 PF12833 Helix-turn-helix domain CS348_23040 PF00923 Transaldolase/Fructose-6-phosphate aldolase CS348_23045 PF00465 Iron-containing alcohol dehydrogenase CS348_23050 PF00141 Peroxidase CS348_23055 PF02219 Methylenetetrahydrofolate reductase CS348_23060 PF02872 5'-nucleotidase, C-terminal domain CS348_23060 PF17936 Bacterial Ig domain CS348_23060 PF00149 Calcineurin-like phosphoesterase CS348_23080 PF00696 Amino acid kinase family CS348_23080 PF00742 Homoserine dehydrogenase CS348_23080 PF03447 Homoserine dehydrogenase, NAD binding domain CS348_23085 PF01053 Cys/Met metabolism PLP-dependent enzyme CS348_23090 PF01340 Met Apo-repressor, MetJ CS348_23095 PF05935 Arylsulfotransferase (ASST) CS348_23095 PF17425 Arylsulfotransferase Ig-like domain CS348_23105 PF01197 Ribosomal protein L31 CS348_23110 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CS348_23110 PF18074 Primosomal protein N C-terminal domain CS348_23110 PF17764 3′ DNA-binding domain (3′BD) CS348_23110 PF00271 Helicase conserved C-terminal domain CS348_23110 PF00270 DEAD/DEAH box helicase CS348_23115 PF00356 Bacterial regulatory proteins, lacI family CS348_23120 PF05036 Sporulation related domain CS348_23125 PF00227 Proteasome subunit CS348_23130 PF10431 C-terminal, D2-small domain, of ClpB protein CS348_23130 PF00004 ATPase family associated with various cellular activities (AAA) CS348_23130 PF07724 AAA domain (Cdc48 subfamily) CS348_23135 PF01040 UbiA prenyltransferase family CS348_23140 PF03737 Aldolase/RraA CS348_23145 PF06005 Cell division protein ZapB CS348_23150 PF00230 Major intrinsic protein CS348_23155 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CS348_23155 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CS348_23160 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CS348_23165 PF00175 Oxidoreductase NAD-binding domain CS348_23165 PF00970 Oxidoreductase FAD-binding domain CS348_23170 PF05656 Protein of unknown function (DUF805) CS348_23175 PF07305 Protein of unknown function (DUF1454) CS348_23180 PF00121 Triosephosphate isomerase CS348_23185 PF00834 Ribulose-phosphate 3 epimerase family CS348_23190 PF03992 Antibiotic biosynthesis monooxygenase CS348_23195 PF01791 DeoC/LacD family aldolase CS348_23200 PF13407 Periplasmic binding protein domain CS348_23205 PF02653 Branched-chain amino acid transport system / permease component CS348_23210 PF02653 Branched-chain amino acid transport system / permease component CS348_23215 PF00005 ABC transporter CS348_23220 PF04198 Putative sugar-binding domain CS348_23225 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CS348_23225 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CS348_23245 PF00392 Bacterial regulatory proteins, gntR family CS348_23245 PF00155 Aminotransferase class I and II CS348_23255 PF00294 pfkB family carbohydrate kinase CS348_23265 PF02611 CDP-diacylglycerol pyrophosphatase CS348_23275 PF00365 Phosphofructokinase CS348_23280 PF16916 Dimerisation domain of Zinc Transporter CS348_23280 PF01545 Cation efflux family CS348_23290 PF04606 Ogr/Delta-like zinc finger CS348_23330 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CS348_23335 PF07484 Phage Tail Collar Domain CS348_23335 PF03335 Phage tail fibre repeat CS348_23335 PF08400 Prophage tail fibre N-terminal CS348_23440 PF05840 Bacteriophage replication gene A protein (GPA) CS348_23480 PF02899 Phage integrase, N-terminal SAM-like domain CS348_23480 PF00589 Phage integrase family CS348_23485 PF07813 LTXXQ motif family protein CS348_23490 PF00486 Transcriptional regulatory protein, C terminal CS348_23490 PF00072 Response regulator receiver domain CS348_23495 PF00672 HAMP domain CS348_23495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_23495 PF00512 His Kinase A (phospho-acceptor) domain CS348_23495 PF16527 Two-component sensor protein CpxA, periplasmic domain CS348_23505 PF03473 MOSC domain CS348_23505 PF03475 3-alpha domain CS348_23510 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CS348_23510 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CS348_23515 PF03480 Bacterial extracellular solute-binding protein, family 7 CS348_23520 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CS348_23525 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CS348_23530 PF06178 Oligogalacturonate-specific porin protein (KdgM) CS348_23535 PF06379 L-rhamnose-proton symport protein (RhaT) CS348_23540 PF12833 Helix-turn-helix domain CS348_23540 PF02311 AraC-like ligand binding domain CS348_23545 PF02311 AraC-like ligand binding domain CS348_23545 PF12833 Helix-turn-helix domain CS348_23550 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CS348_23550 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CS348_23555 PF06134 L-rhamnose isomerase (RhaA) CS348_23560 PF00596 Class II Aldolase and Adducin N-terminal domain CS348_23565 PF00465 Iron-containing alcohol dehydrogenase CS348_23570 PF05336 L-rhamnose mutarotase CS348_23580 PF03591 AzlC protein CS348_23590 PF12889 Protein of unknown function (DUF3829) CS348_23600 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CS348_23600 PF01568 Molydopterin dinucleotide binding domain CS348_23600 PF00384 Molybdopterin oxidoreductase CS348_23605 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CS348_23605 PF00384 Molybdopterin oxidoreductase CS348_23605 PF01568 Molydopterin dinucleotide binding domain CS348_23610 PF09163 Formate dehydrogenase N, transmembrane CS348_23610 PF13247 4Fe-4S dicluster domain CS348_23615 PF01292 Prokaryotic cytochrome b561 CS348_23620 PF04216 Protein involved in formate dehydrogenase formation CS348_23630 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system CS348_23635 PF07859 alpha/beta hydrolase fold CS348_23640 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system CS348_23645 PF01381 Helix-turn-helix CS348_23650 PF00583 Acetyltransferase (GNAT) family CS348_23650 PF09500 Putative thioesterase (yiiD_Cterm) CS348_23655 PF02580 D-Tyr-tRNA(Tyr) deacylase CS348_23660 PF03631 Virulence factor BrkB CS348_23665 PF13419 Haloacid dehalogenase-like hydrolase CS348_23670 PF00455 DeoR C terminal sensor domain CS348_23670 PF08220 DeoR-like helix-turn-helix domain CS348_23675 PF00294 pfkB family carbohydrate kinase CS348_23680 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CS348_23680 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CS348_23685 PF01791 DeoC/LacD family aldolase CS348_23695 PF01263 Aldose 1-epimerase CS348_23700 PF01055 Glycosyl hydrolases family 31 CS348_23715 PF06178 Oligogalacturonate-specific porin protein (KdgM) CS348_23735 PF04055 Radical SAM superfamily CS348_23760 PF03951 Glutamine synthetase, beta-Grasp domain CS348_23760 PF00120 Glutamine synthetase, catalytic domain CS348_23770 PF00989 PAS fold CS348_23770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_23770 PF00512 His Kinase A (phospho-acceptor) domain CS348_23775 PF02954 Bacterial regulatory protein, Fis family CS348_23775 PF00158 Sigma-54 interaction domain CS348_23775 PF00072 Response regulator receiver domain CS348_23785 PF06969 HemN C-terminal domain CS348_23785 PF04055 Radical SAM superfamily CS348_23790 PF04220 Der GTPase activator (YihI) CS348_23800 PF01926 50S ribosome-binding GTPase CS348_23805 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CS348_23805 PF01367 5'-3' exonuclease, C-terminal SAM fold CS348_23805 PF00476 DNA polymerase family A CS348_23805 PF01612 3'-5' exonuclease CS348_23815 PF01553 Acyltransferase CS348_23820 PF01323 DSBA-like thioredoxin domain CS348_23825 PF01636 Phosphotransferase enzyme family CS348_23830 PF06288 Protein of unknown function (DUF1040) CS348_23835 PF12804 MobA-like NTP transferase domain CS348_23840 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CS348_23875 PF12724 Flavodoxin domain CS348_23880 PF02386 Cation transport protein CS348_23885 PF09186 Domain of unknown function (DUF1949) CS348_23885 PF01205 Uncharacterized protein family UPF0029 CS348_23890 PF00557 Metallopeptidase family M24 CS348_23895 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CS348_23895 PF00378 Enoyl-CoA hydratase/isomerase CS348_23895 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CS348_23900 PF02803 Thiolase, C-terminal domain CS348_23900 PF00108 Thiolase, N-terminal domain CS348_23905 PF17425 Arylsulfotransferase Ig-like domain CS348_23905 PF05935 Arylsulfotransferase (ASST) CS348_23910 PF00970 Oxidoreductase FAD-binding domain CS348_23910 PF00175 Oxidoreductase NAD-binding domain CS348_23915 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CS348_23920 PF02357 Transcription termination factor nusG CS348_23925 PF01026 TatD related DNase CS348_23930 PF00902 Sec-independent protein translocase protein (TatC) CS348_23940 PF02416 mttA/Hcf106 family CS348_23945 PF03109 ABC1 family CS348_23950 PF02036 SCP-2 sterol transfer family CS348_23955 PF01209 ubiE/COQ5 methyltransferase family CS348_23960 PF02646 RmuC family CS348_23965 PF01048 Phosphorylase superfamily CS348_23970 PF01738 Dienelactone hydrolase family CS348_23975 PF04055 Radical SAM superfamily CS348_23975 PF13186 Iron-sulfur cluster-binding domain CS348_23980 PF01717 Cobalamin-independent synthase, Catalytic domain CS348_23980 PF08267 Cobalamin-independent synthase, N-terminal domain CS348_23985 PF03466 LysR substrate binding domain CS348_23985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_23990 PF00892 EamA-like transporter family CS348_24000 PF12146 Serine aminopeptidase, S33 CS348_24005 PF01810 LysE type translocator CS348_24010 PF01810 LysE type translocator CS348_24015 PF00271 Helicase conserved C-terminal domain CS348_24015 PF16124 RecQ zinc-binding CS348_24015 PF00270 DEAD/DEAH box helicase CS348_24015 PF09382 RQC domain CS348_24015 PF00570 HRDC domain CS348_24020 PF02253 Phospholipase A1 CS348_24025 PF03061 Thioesterase superfamily CS348_24030 PF00892 EamA-like transporter family CS348_24045 PF01544 CorA-like Mg2+ transporter protein CS348_24055 PF13361 UvrD-like helicase C-terminal domain CS348_24055 PF00580 UvrD/REP helicase N-terminal domain CS348_24060 PF13419 Haloacid dehalogenase-like hydrolase CS348_24065 PF02899 Phage integrase, N-terminal SAM-like domain CS348_24065 PF00589 Phage integrase family CS348_24070 PF04340 Protein of unknown function, DUF484 CS348_24075 PF01678 Diaminopimelate epimerase CS348_24080 PF13627 Prokaryotic lipoprotein-attachment site CS348_24095 PF01491 Frataxin-like domain CS348_24100 PF12633 Adenylate cyclase NT domain CS348_24100 PF01295 Adenylate cyclase, class-I CS348_24105 PF03900 Porphobilinogen deaminase, C-terminal domain CS348_24105 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CS348_24110 PF02602 Uroporphyrinogen-III synthase HemD CS348_24115 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CS348_24120 PF07219 HemY protein N-terminus CS348_24120 PF07719 Tetratricopeptide repeat CS348_24145 PF00324 Amino acid permease CS348_24150 PF03808 Glycosyl transferase WecB/TagA/CpsF family CS348_24155 PF06899 WzyE protein, O-antigen assembly polymerase CS348_24160 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CS348_24165 PF01943 Polysaccharide biosynthesis protein CS348_24170 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CS348_24180 PF00483 Nucleotidyl transferase CS348_24185 PF16363 GDP-mannose 4,6 dehydratase CS348_24190 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CS348_24190 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CS348_24190 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CS348_24195 PF02350 UDP-N-acetylglucosamine 2-epimerase CS348_24200 PF02706 Chain length determinant protein CS348_24205 PF00953 Glycosyl transferase family 4 CS348_24215 PF07497 Rho termination factor, RNA-binding domain CS348_24215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CS348_24215 PF07498 Rho termination factor, N-terminal domain CS348_24220 PF00085 Thioredoxin CS348_24225 PF00271 Helicase conserved C-terminal domain CS348_24225 PF00270 DEAD/DEAH box helicase CS348_24230 PF02541 Ppx/GppA phosphatase family CS348_24235 PF00580 UvrD/REP helicase N-terminal domain CS348_24235 PF13361 UvrD-like helicase C-terminal domain CS348_24240 PF04973 Nicotinamide mononucleotide transporter CS348_24245 PF01048 Phosphorylase superfamily CS348_24260 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CS348_24260 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CS348_24265 PF03466 LysR substrate binding domain CS348_24265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_24285 PF00291 Pyridoxal-phosphate dependent enzyme CS348_24285 PF00585 C-terminal regulatory domain of Threonine dehydratase CS348_24290 PF00920 Dehydratase family CS348_24295 PF01063 Amino-transferase class IV CS348_24305 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CS348_24305 PF00205 Thiamine pyrophosphate enzyme, central domain CS348_24305 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CS348_24310 PF08046 IlvGEDA operon leader peptide CS348_24315 PF13335 Magnesium chelatase, subunit ChlI C-terminal CS348_24315 PF01078 Magnesium chelatase, subunit ChlI CS348_24320 PF04219 Protein of unknown function, DUF CS348_24325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_24325 PF03466 LysR substrate binding domain CS348_24360 PF00392 Bacterial regulatory proteins, gntR family CS348_24360 PF07729 FCD domain CS348_24365 PF07690 Major Facilitator Superfamily CS348_24370 PF00356 Bacterial regulatory proteins, lacI family CS348_24375 PF00294 pfkB family carbohydrate kinase CS348_24380 PF13407 Periplasmic binding protein domain CS348_24385 PF02653 Branched-chain amino acid transport system / permease component CS348_24390 PF00005 ABC transporter CS348_24395 PF05025 RbsD / FucU transport protein family CS348_24400 PF02705 K+ potassium transporter CS348_24405 PF12592 Protein of unknown function (DUF3763) CS348_24405 PF07728 AAA domain (dynein-related subfamily) CS348_24405 PF17868 AAA lid domain CS348_24410 PF05762 VWA domain containing CoxE-like protein CS348_24415 PF03590 Aspartate-ammonia ligase CS348_24420 PF01037 Lrp/AsnC ligand binding domain CS348_24425 PF00258 Flavodoxin CS348_24430 PF13932 GidA associated domain CS348_24430 PF01134 Glucose inhibited division protein A CS348_24435 PF02527 rRNA small subunit methyltransferase G CS348_24440 PF03899 ATP synthase I chain CS348_24445 PF00119 ATP synthase A chain CS348_24450 PF00137 ATP synthase subunit C CS348_24455 PF00430 ATP synthase B/B' CF(0) CS348_24460 PF00213 ATP synthase delta (OSCP) subunit CS348_24465 PF02874 ATP synthase alpha/beta family, beta-barrel domain CS348_24465 PF00306 ATP synthase alpha/beta chain, C terminal domain CS348_24465 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CS348_24470 PF00231 ATP synthase CS348_24475 PF02874 ATP synthase alpha/beta family, beta-barrel domain CS348_24475 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CS348_24480 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CS348_24480 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CS348_24495 PF00132 Bacterial transferase hexapeptide (six repeats) CS348_24495 PF12804 MobA-like NTP transferase domain CS348_24500 PF01380 SIS domain CS348_24515 PF00302 Chloramphenicol acetyltransferase CS348_24520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CS348_24520 PF12793 Sugar transport-related sRNA regulator N-term CS348_24525 PF08501 Shikimate dehydrogenase substrate binding domain CS348_24530 PF02378 Phosphotransferase system, EIIC CS348_24530 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CS348_24535 PF12849 PBP superfamily domain CS348_24540 PF00528 Binding-protein-dependent transport system inner membrane component CS348_24545 PF00528 Binding-protein-dependent transport system inner membrane component CS348_24550 PF00005 ABC transporter CS348_24555 PF01895 PhoU domain CS348_24560 PF13419 Haloacid dehalogenase-like hydrolase CS348_24565 PF00860 Permease family CS348_24570 PF03358 NADPH-dependent FMN reductase CS348_24580 PF03466 LysR substrate binding domain CS348_24580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CS348_24585 PF07690 Major Facilitator Superfamily CS348_24590 PF12631 MnmE helical domain CS348_24590 PF01926 50S ribosome-binding GTPase CS348_24590 PF10396 GTP-binding protein TrmE N-terminus CS348_24595 PF02096 60Kd inner membrane protein CS348_24595 PF14849 YidC periplasmic domain CS348_24600 PF01809 Putative membrane protein insertion efficiency factor CS348_24605 PF00825 Ribonuclease P CS348_24610 PF00468 Ribosomal protein L34 CS348_24615 PF12833 Helix-turn-helix domain CS348_24620 PF00589 Phage integrase family CS348_24625 PF01051 Initiator Replication protein CS348_24630 PF00529 HlyD membrane-fusion protein of T1SS CS348_24630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CS348_24635 PF00005 ABC transporter CS348_24635 PF00664 ABC transporter transmembrane region CS348_24635 PF03412 Peptidase C39 family CS348_24675 PF04754 Putative transposase, YhgA-like CS348_24685 PF00239 Resolvase, N terminal domain CS348_24685 PF02796 Helix-turn-helix domain of resolvase CS348_24690 PF13614 AAA domain CS348_24690 PF18607 ParA helix turn helix domain CS348_24695 PF08775 ParB family CS348_24695 PF02195 ParB-like nuclease domain CS348_24720 PF01555 DNA methylase CS348_24730 PF07128 Protein of unknown function (DUF1380) CS348_24750 PF03230 Antirestriction protein CS348_24755 PF07128 Protein of unknown function (DUF1380) CS348_24765 PF06440 DNA polymerase III, theta subunit CS348_24785 PF00398 Ribosomal RNA adenine dimethylase CS348_24800 PF00436 Single-strand binding protein family CS348_24805 PF06006 Bacterial protein of unknown function (DUF905) CS348_24810 PF02195 ParB-like nuclease domain CS348_24815 PF06290 Plasmid SOS inhibition protein (PsiB) CS348_24830 PF01848 Hok/gef family CS348_24840 PF01848 Hok/gef family CS348_24845 PF13954 PapC N-terminal domain CS348_24845 PF13953 PapC C-terminal domain CS348_24845 PF00577 Outer membrane usher protein CS348_24850 PF02753 Pili assembly chaperone PapD, C-terminal domain CS348_24850 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CS348_24865 PF06067 Domain of unknown function (DUF932) CS348_24885 PF03432 Relaxase/Mobilisation nuclease domain CS348_24885 PF18821 Large polyvalent protein-associated domain 7 CS348_24890 PF00672 HAMP domain CS348_24890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CS348_24890 PF02203 Tar ligand binding domain homologue CS348_24900 PF02195 ParB-like nuclease domain CS348_24905 PF11922 Domain of unknown function (DUF3440) CS348_24905 PF01507 Phosphoadenosine phosphosulfate reductase family CS348_24925 PF04754 Putative transposase, YhgA-like CS348_24940 PF00890 FAD binding domain CS348_24940 PF04205 FMN-binding domain CS348_24945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CS348_24945 PF00989 PAS fold CS348_24945 PF00512 His Kinase A (phospho-acceptor) domain CS348_24950 PF00196 Bacterial regulatory proteins, luxR family CS348_24950 PF00072 Response regulator receiver domain CS348_24955 PF01738 Dienelactone hydrolase family CS348_25065 PF18818 Metallopeptidase superfamily domain CS348_25065 PF13362 Toprim domain CS348_25065 PF08401 Domain of unknown function (DUF1738) CS348_25075 PF00437 Type II/IV secretion system protein CS348_25090 PF00589 Phage integrase family CS348_25100 PF07484 Phage Tail Collar Domain CS348_25105 PF04917 Bacterial shufflon protein, N-terminal constant region CS348_25115 PF01464 Transglycosylase SLT domain CS348_25130 PF00437 Type II/IV secretion system protein CS348_25195 PF02387 IncFII RepA protein family CS348_25205 PF03895 YadA-like membrane anchor domain CS348_25205 PF05662 Coiled stalk of trimeric autotransporter adhesin CS348_25205 PF05658 Head domain of trimeric autotransporter adhesin CS348_25205 PF13018 Extended Signal Peptide of Type V secretion system CS348_25210 PF00691 OmpA family CS348_25210 PF01389 OmpA-like transmembrane domain CS348_25220 PF17287 POTRA domain CS348_25220 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CS348_25220 PF08479 POTRA domain, ShlB-type CS348_25225 PF05860 haemagglutination activity domain CS348_25225 PF13332 Hemagglutinin repeat CS348_25280 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CS348_25325 PF09673 Type-F conjugative transfer system pilin assembly protein CS348_25330 PF06834 TraU protein CS348_25350 PF12477 Sex factor F TraW protein N terminal CS348_25360 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer CS348_25365 PF09676 Type IV conjugative transfer system lipoprotein (TraV) CS348_25370 PF03743 Bacterial conjugation TrbI-like protein CS348_25385 PF07178 TraL protein CS348_25390 PF05513 TraA CS348_25405 PF01464 Transglycosylase SLT domain CS348_25435 PF06952 PsiA protein CS348_25440 PF06290 Plasmid SOS inhibition protein (PsiB) CS348_25445 PF02195 ParB-like nuclease domain CS348_25450 PF06006 Bacterial protein of unknown function (DUF905) CS348_25455 PF00436 Single-strand binding protein family CS348_25465 PF13610 DDE domain CS348_25470 PF04754 Putative transposase, YhgA-like CS348_25485 PF05857 TraX protein CS348_25500 PF06924 Protein of unknown function (DUF1281) CS348_25520 PF06406 StbA protein CS348_25525 PF00717 Peptidase S24-like CS348_25530 PF13438 Domain of unknown function (DUF4113) CS348_25530 PF00817 impB/mucB/samB family CS348_25530 PF11799 impB/mucB/samB family C-terminal domain CS348_25545 PF01051 Initiator Replication protein CS348_25550 PF00589 Phage integrase family CS348_25565 PF01845 CcdB protein CS348_25570 PF07362 Post-segregation antitoxin CcdA CS348_25605 PF12833 Helix-turn-helix domain CS348_25610 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CS348_25610 PF08548 Peptidase M10 serralysin C terminal CS348_25610 PF00413 Matrixin CS348_25615 PF02974 Protease inhibitor Inh CS348_25620 PF00005 ABC transporter CS348_25620 PF00664 ABC transporter transmembrane region CS348_25625 PF00529 HlyD membrane-fusion protein of T1SS CS348_25630 PF02321 Outer membrane efflux protein CS348_25645 PF02677 Epoxyqueuosine reductase QueH CS348_25660 PF01032 FecCD transport family CS348_25670 PF00005 ABC transporter CS348_25720 PF03279 Bacterial lipid A biosynthesis acyltransferase CS348_25725 PF04393 Protein of unknown function (DUF535) CS348_25730 PF00534 Glycosyl transferases group 1 CS348_25730 PF13439 Glycosyltransferase Family 4 CS348_25745 PF01797 Transposase IS200 like CS348_25775 PF04352 ProQ/FINO family CS348_25785 PF02387 IncFII RepA protein family CS348_25795 PF10723 Replication regulatory protein RepB CS348_25805 PF18272 single-stranded DNA binding TraI N-terminal subdomain CS348_25805 PF08751 TrwC relaxase CS348_25805 PF18340 DNA relaxase TraI 2B/2B-like domain CS348_25805 PF07057 DNA helicase TraI CS348_25825 PF05818 Enterobacterial TraT complement resistance protein CS348_25835 PF07916 TraG-like protein, N-terminal region CS348_25840 PF06122 Conjugative relaxosome accessory transposon protein CS348_25850 PF13728 F plasmid transfer operon protein CS348_25860 PF06986 Type-1V conjugative transfer system mating pair stabilisation