CS348_00005 SM00382 ATPases associated with a variety of cellular activities CS348_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain CS348_00010 SM00480 DNA polymerase III beta subunit CS348_00020 SM00387 Histidine kinase-like ATPases CS348_00020 SM00433 TopoisomeraseII CS348_00055 SM00073 Histidine Phosphotransfer domain CS348_00055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CS348_00055 SM00387 Histidine kinase-like ATPases CS348_00055 SM00388 His Kinase A (phosphoacceptor) domain CS348_00055 SM00448 cheY-homologous receiver domain CS348_00065 SM00448 cheY-homologous receiver domain CS348_00065 SM00862 Transcriptional regulatory protein, C terminal CS348_00085 SM01235 CS348_00085 CS348_00090 SM00382 ATPases associated with a variety of cellular activities CS348_00225 SM00420 helix_turn_helix, Deoxyribose operon repressor CS348_00225 SM01134 CS348_00225 CS348_00245 SM00421 helix_turn_helix, Lux Regulon CS348_00245 SM00448 cheY-homologous receiver domain CS348_00250 SM00387 Histidine kinase-like ATPases CS348_00270 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_00270 SM00866 CS348_00270 CS348_00310 SM00530 Helix-turn-helix XRE-family like proteins CS348_00335 SM00382 ATPases associated with a variety of cellular activities CS348_00385 SM00831 Cation transporter/ATPase, N-terminus CS348_00415 SM00862 Transcriptional regulatory protein, C terminal CS348_00425 SM00869 Autotransporter beta-domain CS348_00490 SM00487 DEAD-like helicases superfamily CS348_00490 SM00490 helicase superfamily c-terminal domain CS348_00500 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CS348_00500 SM00954 Region found in RelA / SpoT proteins CS348_00505 SM01409 CS348_00505 CS348_00510 SM00072 Guanylate kinase homologues. CS348_00515 SM00532 Ligase N family CS348_00525 SM00849 Metallo-beta-lactamase superfamily CS348_00585 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CS348_00585 SM01232 CS348_00585 CS348_00675 SM00829 Enoylreductase CS348_00700 SM00450 Rhodanese Homology Domain CS348_00720 SM00971 Serine acetyltransferase, N-terminal CS348_00735 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_00735 SM00895 CS348_00735 CS348_00820 SM00342 helix_turn_helix, arabinose operon control protein CS348_00825 SM01007 Class II Aldolase and Adducin N-terminal domain CS348_00835 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CS348_00875 SM00346 helix_turn_helix isocitrate lyase regulation CS348_00890 SM00642 Alpha-amylase domain CS348_00895 SM00047 Lysozyme subfamily 2 CS348_00900 SM00342 helix_turn_helix, arabinose operon control protein CS348_00990 SM00357 Cold shock protein domain CS348_01085 SM00382 ATPases associated with a variety of cellular activities CS348_01090 SM00382 ATPases associated with a variety of cellular activities CS348_01150 SM00028 Tetratricopeptide repeats CS348_01160 SM00052 Putative diguanylate phosphodiesterase CS348_01160 SM00267 diguanylate cyclase CS348_01180 SM00052 Putative diguanylate phosphodiesterase CS348_01205 SM00421 helix_turn_helix, Lux Regulon CS348_01225 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_01225 SM00866 CS348_01225 CS348_01245 SM00870 CS348_01245 CS348_01260 SM00014 Acid phosphatase homologues CS348_01305 SM00382 ATPases associated with a variety of cellular activities CS348_01350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CS348_01350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CS348_01350 SM00319 Homologues of the ligand binding domain of Tar CS348_01380 SM00382 ATPases associated with a variety of cellular activities CS348_01380 SM00962 SRP54-type protein, GTPase domain CS348_01380 SM00963 SRP54-type protein, helical bundle domain CS348_01385 SM00382 ATPases associated with a variety of cellular activities CS348_01430 SM00382 ATPases associated with a variety of cellular activities CS348_01435 SM00382 ATPases associated with a variety of cellular activities CS348_01465 SM00382 ATPases associated with a variety of cellular activities CS348_01500 SM00420 helix_turn_helix, Deoxyribose operon repressor CS348_01525 SM00354 helix_turn _helix lactose operon repressor CS348_01545 SM00859 Semialdehyde dehydrogenase, NAD binding domain CS348_01550 SM00642 Alpha-amylase domain CS348_01555 SM00642 Alpha-amylase domain CS348_01580 SM00450 Rhodanese Homology Domain CS348_01590 SM00420 helix_turn_helix, Deoxyribose operon repressor CS348_01590 SM01134 CS348_01590 CS348_01595 SM00421 helix_turn_helix, Lux Regulon CS348_01645 SM00899 CS348_01645 CS348_01655 SM00316 Ribosomal protein S1-like RNA-binding domain CS348_01655 SM00732 Likely ribonuclease with RNase H fold. CS348_01665 SM00448 cheY-homologous receiver domain CS348_01665 SM00862 Transcriptional regulatory protein, C terminal CS348_01670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CS348_01670 SM00387 Histidine kinase-like ATPases CS348_01670 SM00388 His Kinase A (phosphoacceptor) domain CS348_01690 SM00363 S4 RNA-binding domain CS348_01735 SM00965 Secretin and TonB N terminus short domain CS348_01790 SM00869 Autotransporter beta-domain CS348_01850 SM00100 Cyclic nucleotide-monophosphate binding domain CS348_01850 SM00419 helix_turn_helix, cAMP Regulatory protein CS348_01885 SM00382 ATPases associated with a variety of cellular activities CS348_01925 SM01321 CS348_01925 CS348_01965 SM00838 Elongation factor G C-terminus CS348_01965 SM00889 Elongation factor G, domain IV CS348_02005 SM01403 CS348_02005 CS348_02025 SM01382 CS348_02025 CS348_02025 SM01383 CS348_02025 CS348_02040 SM00322 K homology RNA-binding domain CS348_02060 SM01374 CS348_02060 CS348_02065 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CS348_02130 SM00363 S4 RNA-binding domain CS348_02130 SM01390 CS348_02130 CS348_02135 SM00662 RNA polymerases D CS348_02150 SM00422 helix_turn_helix, mercury resistance CS348_02270 SM00052 Putative diguanylate phosphodiesterase CS348_02270 SM00267 diguanylate cyclase CS348_02315 SM00878 Biotin carboxylase C-terminal domain CS348_02335 SM00829 Enoylreductase CS348_02340 SM00052 Putative diguanylate phosphodiesterase CS348_02340 SM00267 diguanylate cyclase CS348_02375 SM00316 Ribosomal protein S1-like RNA-binding domain CS348_02435 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_02440 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_02440 SM00895 CS348_02440 CS348_02480 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CS348_02485 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CS348_02525 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_02525 SM00895 CS348_02525 CS348_02530 SM01130 CS348_02530 CS348_02585 SM00729 Elongator protein 3, MiaB family, Radical SAM CS348_02590 SM00073 Histidine Phosphotransfer domain CS348_02590 SM00091 PAS domain CS348_02590 SM00387 Histidine kinase-like ATPases CS348_02590 SM00388 His Kinase A (phosphoacceptor) domain CS348_02590 SM00448 cheY-homologous receiver domain CS348_02640 SM00382 ATPases associated with a variety of cellular activities CS348_02670 SM00382 ATPases associated with a variety of cellular activities CS348_02745 SM01103 CS348_02745 CS348_02760 SM00382 ATPases associated with a variety of cellular activities CS348_02805 SM00316 Ribosomal protein S1-like RNA-binding domain CS348_02805 SM00322 K homology RNA-binding domain CS348_02825 SM01387 CS348_02825 CS348_02830 SM00316 Ribosomal protein S1-like RNA-binding domain CS348_02830 SM00322 K homology RNA-binding domain CS348_02835 SM00028 Tetratricopeptide repeats CS348_02840 SM00487 DEAD-like helicases superfamily CS348_02840 SM00490 helicase superfamily c-terminal domain CS348_02875 SM00465 GIY-YIG type nucleases (URI domain) CS348_02890 SM00859 Semialdehyde dehydrogenase, NAD binding domain CS348_02895 SM00749 bacterial OsmY and nodulation domain CS348_02920 SM00420 helix_turn_helix, Deoxyribose operon repressor CS348_02920 SM01134 CS348_02920 CS348_02925 SM00829 Enoylreductase CS348_02955 SM00858 CS348_02955 CS348_03145 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CS348_03145 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CS348_03150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CS348_03150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CS348_03180 SM00400 zinc finger CS348_03180 SM00493 CS348_03180 CS348_03180 SM00766 DNA primase DnaG DnaB-binding CS348_03200 SM01207 CS348_03200 CS348_03205 SM00905 Dihydroneopterin aldolase CS348_03215 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CS348_03220 SM00287 Bacterial SH3 domain homologues CS348_03225 SM01118 CS348_03225 CS348_03245 SM00244 prohibitin homologues CS348_03340 SM00387 Histidine kinase-like ATPases CS348_03340 SM00433 TopoisomeraseII CS348_03355 SM00387 Histidine kinase-like ATPases CS348_03355 SM00388 His Kinase A (phosphoacceptor) domain CS348_03360 SM00448 cheY-homologous receiver domain CS348_03360 SM00862 Transcriptional regulatory protein, C terminal CS348_03370 SM00342 helix_turn_helix, arabinose operon control protein CS348_03370 SM00871 Bacterial transcription activator, effector binding domain CS348_03375 SM00434 DNA Topoisomerase IV CS348_03380 SM00563 Phosphate acyltransferases CS348_03405 SM01324 CS348_03405 CS348_03410 SM00729 Elongator protein 3, MiaB family, Radical SAM CS348_03470 SM00342 helix_turn_helix, arabinose operon control protein CS348_03525 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CS348_03525 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CS348_03600 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CS348_03695 SM00421 helix_turn_helix, Lux Regulon CS348_03795 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CS348_03795 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CS348_03795 SM00493 CS348_03795 CS348_03820 SM00506 Appr-1"-p processing enzyme CS348_04055 SM00710 Parallel beta-helix repeats CS348_04055 SM00912 haemagglutination activity domain CS348_04400 SM00478 endonuclease III CS348_04400 SM00525 CS348_04400 CS348_04425 SM00870 CS348_04425 CS348_04435 SM00729 Elongator protein 3, MiaB family, Radical SAM CS348_04445 SM01152 CS348_04445 CS348_04460 SM00382 ATPases associated with a variety of cellular activities CS348_04465 SM00346 helix_turn_helix isocitrate lyase regulation CS348_04470 SM00732 Likely ribonuclease with RNase H fold. CS348_04495 SM00731 SprT homologues. CS348_04540 SM00861 Transketolase, pyrimidine binding domain CS348_04575 SM00382 ATPases associated with a variety of cellular activities CS348_04580 SM00382 ATPases associated with a variety of cellular activities CS348_04605 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CS348_04675 SM01011 Aminopeptidase P, N-terminal domain CS348_04720 SM01022 CS348_04720 CS348_04795 SM00257 Lysin motif CS348_04935 SM00354 helix_turn _helix lactose operon repressor CS348_04940 SM00354 helix_turn _helix lactose operon repressor CS348_04945 SM00563 Phosphate acyltransferases CS348_04970 SM00927 DNA mismatch repair enzyme MutH CS348_04980 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CS348_05035 SM00382 ATPases associated with a variety of cellular activities CS348_05045 SM00646 CS348_05045 CS348_05060 SM00925 MltA specific insert domain CS348_05105 SM00420 helix_turn_helix, Deoxyribose operon repressor CS348_05105 SM01134 CS348_05105 CS348_05130 SM01007 Class II Aldolase and Adducin N-terminal domain CS348_05140 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CS348_05140 SM00475 5'-3' exonuclease CS348_05205 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CS348_05210 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CS348_05220 SM00073 Histidine Phosphotransfer domain CS348_05220 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CS348_05220 SM00387 Histidine kinase-like ATPases CS348_05220 SM00388 His Kinase A (phosphoacceptor) domain CS348_05220 SM00448 cheY-homologous receiver domain CS348_05230 SM00954 Region found in RelA / SpoT proteins CS348_05260 SM01192 CS348_05260 CS348_05260 SM01193 CS348_05260 CS348_05270 SM00849 Metallo-beta-lactamase superfamily CS348_05310 SM00487 DEAD-like helicases superfamily CS348_05335 SM01101 CS348_05335 CS348_05405 SM00257 Lysin motif CS348_05430 SM00347 helix_turn_helix multiple antibiotic resistance protein CS348_05435 SM00420 helix_turn_helix, Deoxyribose operon repressor CS348_05435 SM01134 CS348_05435 CS348_05450 SM01007 Class II Aldolase and Adducin N-terminal domain CS348_05485 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CS348_05485 SM00534 ATPase domain of DNA mismatch repair MUTS family CS348_05525 SM00342 helix_turn_helix, arabinose operon control protein CS348_05550 SM00382 ATPases associated with a variety of cellular activities CS348_05630 SM00194 Protein tyrosine phosphatase, catalytic domain CS348_05630 SM00404 Protein tyrosine phosphatase, catalytic domain motif CS348_05645 SM00862 Transcriptional regulatory protein, C terminal CS348_05650 SM00342 helix_turn_helix, arabinose operon control protein CS348_05690 SM00342 helix_turn_helix, arabinose operon control protein CS348_05720 SM00382 ATPases associated with a variety of cellular activities CS348_05735 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CS348_05735 SM00382 ATPases associated with a variety of cellular activities CS348_05835 SM00849 Metallo-beta-lactamase superfamily CS348_05840 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CS348_05840 SM00382 ATPases associated with a variety of cellular activities CS348_05850 SM00420 helix_turn_helix, Deoxyribose operon repressor CS348_05850 SM01134 CS348_05850 CS348_05895 SM00382 ATPases associated with a variety of cellular activities CS348_05910 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CS348_05985 SM00347 helix_turn_helix multiple antibiotic resistance protein CS348_06005 SM00382 ATPases associated with a variety of cellular activities CS348_06045 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_06080 SM00528 Domain in histone-like proteins of HNS family CS348_06090 SM00450 Rhodanese Homology Domain CS348_06095 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CS348_06110 SM00257 Lysin motif CS348_06110 SM00749 bacterial OsmY and nodulation domain CS348_06115 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_06115 SM00895 CS348_06115 CS348_06160 SM00448 cheY-homologous receiver domain CS348_06160 SM00862 Transcriptional regulatory protein, C terminal CS348_06165 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CS348_06165 SM00387 Histidine kinase-like ATPases CS348_06165 SM00388 His Kinase A (phosphoacceptor) domain CS348_06215 SM00382 ATPases associated with a variety of cellular activities CS348_06345 SM00382 ATPases associated with a variety of cellular activities CS348_06405 SM01091 Transporter associated domain CS348_06420 SM00382 ATPases associated with a variety of cellular activities CS348_06420 SM00962 SRP54-type protein, GTPase domain CS348_06420 SM00963 SRP54-type protein, helical bundle domain CS348_06445 SM00267 diguanylate cyclase CS348_06460 SM00830 Chorismate mutase type II CS348_06470 SM00830 Chorismate mutase type II CS348_06485 SM00363 S4 RNA-binding domain CS348_06495 SM00382 ATPases associated with a variety of cellular activities CS348_06495 SM01086 C-terminal, D2-small domain, of ClpB protein CS348_06535 SM00155 Phospholipase D. Active site motifs. CS348_06540 SM00881 CoA binding domain CS348_06545 SM01144 CS348_06545 CS348_06560 SM00967 RNA 2'-O ribose methyltransferase substrate binding CS348_06565 SM00986 Uracil DNA glycosylase superfamily CS348_06565 SM00987 UreE urease accessory protein, C-terminal domain CS348_06585 SM00487 DEAD-like helicases superfamily CS348_06585 SM00490 helicase superfamily c-terminal domain CS348_06645 SM00358 Double-stranded RNA binding motif CS348_06645 SM00535 Ribonuclease III family CS348_06715 SM00062 Bacterial periplasmic substrate-binding proteins CS348_06725 SM01211 CS348_06725 CS348_06730 SM00387 Histidine kinase-like ATPases CS348_06730 SM00388 His Kinase A (phosphoacceptor) domain CS348_06740 SM00382 ATPases associated with a variety of cellular activities CS348_06740 SM00448 cheY-homologous receiver domain CS348_06745 SM00938 Nitrogen regulatory protein P-II CS348_06765 SM00862 Transcriptional regulatory protein, C terminal CS348_06850 SM00271 DnaJ molecular chaperone homology domain CS348_06890 SM00450 Rhodanese Homology Domain CS348_06895 SM01359 CS348_06895 CS348_06895 SM01360 CS348_06895 CS348_06905 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CS348_06925 SM00562 CS348_06925 CS348_06940 SM00530 Helix-turn-helix XRE-family like proteins CS348_06960 SM00564 beta-propeller repeat CS348_07000 SM00869 Autotransporter beta-domain CS348_07010 SM00116 Domain in cystathionine beta-synthase and other proteins. CS348_07010 SM01240 CS348_07010 CS348_07055 SM00052 Putative diguanylate phosphodiesterase CS348_07055 SM00267 diguanylate cyclase CS348_07135 SM01130 CS348_07135 CS348_07180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CS348_07180 SM00387 Histidine kinase-like ATPases CS348_07210 SM00861 Transketolase, pyrimidine binding domain CS348_07225 SM00919 Malic enzyme, NAD binding domain CS348_07225 SM01274 CS348_07225 CS348_07230 SM00877 CS348_07230 CS348_07255 SM00877 CS348_07255 CS348_07300 SM00877 CS348_07300 CS348_07305 SM00877 CS348_07305 CS348_07310 SM00342 helix_turn_helix, arabinose operon control protein CS348_07320 SM00646 CS348_07320 CS348_07345 SM00822 CS348_07345 CS348_07365 SM00382 ATPases associated with a variety of cellular activities CS348_07385 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_07430 SM00771 ZipA, C-terminal domain (FtsZ-binding) CS348_07435 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CS348_07435 SM00292 breast cancer carboxy-terminal domain CS348_07435 SM00532 Ligase N family CS348_07525 SM00052 Putative diguanylate phosphodiesterase CS348_07525 SM00267 diguanylate cyclase CS348_07645 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CS348_07645 SM00387 Histidine kinase-like ATPases CS348_07645 SM00388 His Kinase A (phosphoacceptor) domain CS348_07650 SM00448 cheY-homologous receiver domain CS348_07705 SM00463 Small MutS-related domain CS348_07745 SM00825 Beta-ketoacyl synthase CS348_07765 SM00530 Helix-turn-helix XRE-family like proteins CS348_07790 SM00859 Semialdehyde dehydrogenase, NAD binding domain CS348_07865 SM00062 Bacterial periplasmic substrate-binding proteins CS348_07870 SM00062 Bacterial periplasmic substrate-binding proteins CS348_07885 SM00382 ATPases associated with a variety of cellular activities CS348_07915 SM00354 helix_turn _helix lactose operon repressor CS348_07945 SM00861 Transketolase, pyrimidine binding domain CS348_07985 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CS348_08030 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CS348_08035 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CS348_08035 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CS348_08075 SM00260 Two component signalling adaptor domain CS348_08075 SM00448 cheY-homologous receiver domain CS348_08115 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CS348_08180 SM00852 Probable molybdopterin binding domain CS348_08185 SM00346 helix_turn_helix isocitrate lyase regulation CS348_08190 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CS348_08280 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_08280 SM00895 CS348_08280 CS348_08290 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CS348_08300 SM00434 DNA Topoisomerase IV CS348_08305 SM00387 Histidine kinase-like ATPases CS348_08305 SM00388 His Kinase A (phosphoacceptor) domain CS348_08305 SM00448 cheY-homologous receiver domain CS348_08310 SM00421 helix_turn_helix, Lux Regulon CS348_08310 SM00448 cheY-homologous receiver domain CS348_08315 SM00387 Histidine kinase-like ATPases CS348_08335 SM00342 helix_turn_helix, arabinose operon control protein CS348_08345 SM00382 ATPases associated with a variety of cellular activities CS348_08365 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CS348_08395 SM00382 ATPases associated with a variety of cellular activities CS348_08435 SM00421 helix_turn_helix, Lux Regulon CS348_08435 SM00448 cheY-homologous receiver domain CS348_08490 SM00487 DEAD-like helicases superfamily CS348_08490 SM00490 helicase superfamily c-terminal domain CS348_08495 SM00363 S4 RNA-binding domain CS348_08515 SM00382 ATPases associated with a variety of cellular activities CS348_08535 SM00052 Putative diguanylate phosphodiesterase CS348_08555 SM00014 Acid phosphatase homologues CS348_08565 SM00841 Elongation factor P, C-terminal CS348_08565 SM01185 CS348_08565 CS348_08610 SM00518 AP endonuclease family 2 CS348_08655 SM00530 Helix-turn-helix XRE-family like proteins CS348_08680 SM00354 helix_turn _helix lactose operon repressor CS348_08690 SM00382 ATPases associated with a variety of cellular activities CS348_08815 SM01217 CS348_08815 CS348_08830 SM00382 ATPases associated with a variety of cellular activities CS348_08845 SM00422 helix_turn_helix, mercury resistance CS348_08850 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CS348_08850 SM00387 Histidine kinase-like ATPases CS348_08855 SM00448 cheY-homologous receiver domain CS348_08855 SM00850 LytTr DNA-binding domain CS348_08925 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_08925 SM00866 CS348_08925 CS348_08945 SM01133 CS348_08945 CS348_08950 SM00046 Diacylglycerol kinase catalytic domain (presumed) CS348_08995 SM00448 cheY-homologous receiver domain CS348_08995 SM00862 Transcriptional regulatory protein, C terminal CS348_09000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CS348_09000 SM00387 Histidine kinase-like ATPases CS348_09000 SM00388 His Kinase A (phosphoacceptor) domain CS348_09035 SM00478 endonuclease III CS348_09035 SM01009 AlkA N-terminal domain CS348_09040 SM00052 Putative diguanylate phosphodiesterase CS348_09040 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CS348_09040 SM00091 PAS domain CS348_09040 SM00267 diguanylate cyclase CS348_09060 SM01091 Transporter associated domain CS348_09075 SM00226 Low molecular weight phosphatase family CS348_09240 SM01350 CS348_09240 CS348_09250 SM00984 UDP binding domain CS348_09320 SM00479 CS348_09320 CS348_09340 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CS348_09355 SM00936 Penicillin-binding protein 5, C-terminal domain CS348_09360 SM00871 Bacterial transcription activator, effector binding domain CS348_09390 SM00877 CS348_09390 CS348_09395 SM00877 CS348_09395 CS348_09435 SM00877 CS348_09435 CS348_09440 SM00877 CS348_09440 CS348_09470 SM00877 CS348_09470 CS348_09475 SM00877 CS348_09475 CS348_09485 SM00342 helix_turn_helix, arabinose operon control protein CS348_09565 SM00382 ATPases associated with a variety of cellular activities CS348_09620 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CS348_09635 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CS348_09640 SM00226 Low molecular weight phosphatase family CS348_09650 SM00382 ATPases associated with a variety of cellular activities CS348_09760 SM00357 Cold shock protein domain CS348_09780 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CS348_09810 SM00267 diguanylate cyclase CS348_09830 SM00421 helix_turn_helix, Lux Regulon CS348_09880 SM00382 ATPases associated with a variety of cellular activities CS348_09925 SM00642 Alpha-amylase domain CS348_09965 SM00062 Bacterial periplasmic substrate-binding proteins CS348_09965 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CS348_09980 SM00382 ATPases associated with a variety of cellular activities CS348_09985 SM00421 helix_turn_helix, Lux Regulon CS348_10000 SM00421 helix_turn_helix, Lux Regulon CS348_10000 SM00448 cheY-homologous receiver domain CS348_10005 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CS348_10005 SM00465 GIY-YIG type nucleases (URI domain) CS348_10130 SM00073 Histidine Phosphotransfer domain CS348_10130 SM00260 Two component signalling adaptor domain CS348_10130 SM00387 Histidine kinase-like ATPases CS348_10130 SM01231 CS348_10130 CS348_10135 SM00260 Two component signalling adaptor domain CS348_10140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CS348_10140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CS348_10140 SM00319 Homologues of the ligand binding domain of Tar CS348_10145 SM00138 Methyltransferase, chemotaxis proteins CS348_10150 SM00448 cheY-homologous receiver domain CS348_10155 SM00448 cheY-homologous receiver domain CS348_10190 SM00836 DALR anticodon binding domain CS348_10190 SM01016 Arginyl tRNA synthetase N terminal dom CS348_10265 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CS348_10270 SM00382 ATPases associated with a variety of cellular activities CS348_10280 SM00382 ATPases associated with a variety of cellular activities CS348_10290 SM00257 Lysin motif CS348_10360 SM00479 CS348_10360 CS348_10575 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CS348_10580 SM00945 ProQ/FINO family CS348_10585 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CS348_10585 SM00245 tail specific protease CS348_10600 SM00346 helix_turn_helix isocitrate lyase regulation CS348_10625 SM00357 Cold shock protein domain CS348_10675 SM01091 Transporter associated domain CS348_10680 SM00052 Putative diguanylate phosphodiesterase CS348_10710 SM00487 DEAD-like helicases superfamily CS348_10710 SM00491 CS348_10710 CS348_10735 SM00341 Helicase and RNase D C-terminal CS348_10735 SM00474 3'-5' exonuclease CS348_10795 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_10810 SM01005 Alanine racemase, C-terminal domain CS348_10815 SM01091 Transporter associated domain CS348_10845 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CS348_10925 SM01400 CS348_10925 CS348_10945 SM00937 CS348_10945 CS348_10990 SM00421 helix_turn_helix, Lux Regulon CS348_10990 SM00448 cheY-homologous receiver domain CS348_10995 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CS348_10995 SM00387 Histidine kinase-like ATPases CS348_11010 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CS348_11080 SM00448 cheY-homologous receiver domain CS348_11090 SM00528 Domain in histone-like proteins of HNS family CS348_11130 SM00382 ATPases associated with a variety of cellular activities CS348_11135 SM00382 ATPases associated with a variety of cellular activities CS348_11150 SM00155 Phospholipase D. Active site motifs. CS348_11250 SM00481 DNA polymerase alpha chain like domain CS348_11260 SM00363 S4 RNA-binding domain CS348_11270 SM00822 CS348_11270 CS348_11290 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CS348_11290 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CS348_11290 SM00493 CS348_11290 CS348_11330 SM00014 Acid phosphatase homologues CS348_11345 SM00028 Tetratricopeptide repeats CS348_11350 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CS348_11365 SM00420 helix_turn_helix, Deoxyribose operon repressor CS348_11365 SM01134 CS348_11365 CS348_11375 SM00052 Putative diguanylate phosphodiesterase CS348_11375 SM00091 PAS domain CS348_11375 SM00267 diguanylate cyclase CS348_11385 SM00357 Cold shock protein domain CS348_11385 SM00955 CS348_11385 CS348_11420 SM00382 ATPases associated with a variety of cellular activities CS348_11425 SM00382 ATPases associated with a variety of cellular activities CS348_11470 SM00857 Resolvase, N terminal domain CS348_11485 SM00382 ATPases associated with a variety of cellular activities CS348_11510 SM00450 Rhodanese Homology Domain CS348_11525 SM00091 PAS domain CS348_11525 SM00382 ATPases associated with a variety of cellular activities CS348_11535 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CS348_11565 SM00822 CS348_11565 CS348_11585 SM00342 helix_turn_helix, arabinose operon control protein CS348_11585 SM00871 Bacterial transcription activator, effector binding domain CS348_11620 SM00873 B3/4 domain CS348_11625 SM00530 Helix-turn-helix XRE-family like proteins CS348_11645 SM00100 Cyclic nucleotide-monophosphate binding domain CS348_11645 SM00419 helix_turn_helix, cAMP Regulatory protein CS348_11655 SM00463 Small MutS-related domain CS348_11665 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CS348_11680 SM00487 DEAD-like helicases superfamily CS348_11680 SM00490 helicase superfamily c-terminal domain CS348_11715 SM00890 Domain of unknown function CS348_11765 SM00382 ATPases associated with a variety of cellular activities CS348_11765 SM00487 DEAD-like helicases superfamily CS348_11765 SM00490 helicase superfamily c-terminal domain CS348_11765 SM00847 Helicase associated domain (HA2) Add an annotation CS348_11805 SM00062 Bacterial periplasmic substrate-binding proteins CS348_11835 SM00829 Enoylreductase CS348_11845 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CS348_11845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CS348_11845 SM00319 Homologues of the ligand binding domain of Tar CS348_11855 SM01150 CS348_11855 CS348_11870 SM00867 YceI-like domain CS348_11885 SM00420 helix_turn_helix, Deoxyribose operon repressor CS348_11885 SM01134 CS348_11885 CS348_11950 SM00530 Helix-turn-helix XRE-family like proteins CS348_11985 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_12035 SM00829 Enoylreductase CS348_12040 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_12040 SM00895 CS348_12040 CS348_12105 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CS348_12145 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CS348_12165 SM00829 Enoylreductase CS348_12215 SM00642 Alpha-amylase domain CS348_12220 SM00642 Alpha-amylase domain CS348_12225 SM00642 Alpha-amylase domain CS348_12240 SM00354 helix_turn _helix lactose operon repressor CS348_12300 SM00347 helix_turn_helix multiple antibiotic resistance protein CS348_12330 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_12330 SM00895 CS348_12330 CS348_12430 SM00347 helix_turn_helix multiple antibiotic resistance protein CS348_12435 SM00342 helix_turn_helix, arabinose operon control protein CS348_12490 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_12490 SM00895 CS348_12490 CS348_12515 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CS348_12550 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CS348_12585 SM00116 Domain in cystathionine beta-synthase and other proteins. CS348_12585 SM00382 ATPases associated with a variety of cellular activities CS348_12660 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CS348_12660 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CS348_12680 SM00448 cheY-homologous receiver domain CS348_12680 SM00862 Transcriptional regulatory protein, C terminal CS348_12700 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CS348_12700 SM00387 Histidine kinase-like ATPases CS348_12700 SM00388 His Kinase A (phosphoacceptor) domain CS348_12730 SM00354 helix_turn _helix lactose operon repressor CS348_12790 SM00900 CS348_12790 CS348_12800 SM00478 endonuclease III CS348_12800 SM00525 CS348_12800 CS348_12820 SM00363 S4 RNA-binding domain CS348_12845 SM00347 helix_turn_helix multiple antibiotic resistance protein CS348_12895 SM00479 CS348_12895 CS348_12925 SM00354 helix_turn _helix lactose operon repressor CS348_13000 SM00382 ATPases associated with a variety of cellular activities CS348_13060 SM00028 Tetratricopeptide repeats CS348_13120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CS348_13120 SM00387 Histidine kinase-like ATPases CS348_13120 SM00388 His Kinase A (phosphoacceptor) domain CS348_13120 SM00448 cheY-homologous receiver domain CS348_13125 SM00421 helix_turn_helix, Lux Regulon CS348_13125 SM00448 cheY-homologous receiver domain CS348_13130 SM00422 helix_turn_helix, mercury resistance CS348_13145 SM00421 helix_turn_helix, Lux Regulon CS348_13145 SM00448 cheY-homologous receiver domain CS348_13150 SM00387 Histidine kinase-like ATPases CS348_13150 SM00388 His Kinase A (phosphoacceptor) domain CS348_13165 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CS348_13170 SM00420 helix_turn_helix, Deoxyribose operon repressor CS348_13205 SM00257 Lysin motif CS348_13225 SM00382 ATPases associated with a variety of cellular activities CS348_13295 SM00882 Coenzyme A transferase CS348_13305 SM00342 helix_turn_helix, arabinose operon control protein CS348_13310 SM00893 Electron transfer flavoprotein domain CS348_13315 SM00893 Electron transfer flavoprotein domain CS348_13370 SM00382 ATPases associated with a variety of cellular activities CS348_13395 SM00530 Helix-turn-helix XRE-family like proteins CS348_13625 SM00411 bacterial (prokaryotic) histone like domain CS348_13630 SM00873 B3/4 domain CS348_13630 SM00874 tRNA synthetase B5 domain CS348_13630 SM00896 Ferredoxin-fold anticodon binding domain CS348_13655 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CS348_13665 SM00477 DNA/RNA non-specific endonuclease CS348_13665 SM00892 DNA/RNA non-specific endonuclease CS348_13725 SM01060 CS348_13725 CS348_13740 SM00342 helix_turn_helix, arabinose operon control protein CS348_13775 SM00465 GIY-YIG type nucleases (URI domain) CS348_13835 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CS348_13840 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CS348_13840 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CS348_13840 SM00493 CS348_13840 CS348_13870 SM00870 CS348_13870 CS348_13890 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CS348_13920 SM00763 PrkA AAA domain CS348_13930 SM00267 diguanylate cyclase CS348_13950 SM00342 helix_turn_helix, arabinose operon control protein CS348_14015 SM00830 Chorismate mutase type II CS348_14035 SM00422 helix_turn_helix, mercury resistance CS348_14040 SM00421 helix_turn_helix, Lux Regulon CS348_14070 SM00382 ATPases associated with a variety of cellular activities CS348_14075 SM00382 ATPases associated with a variety of cellular activities CS348_14160 SM00357 Cold shock protein domain CS348_14165 SM00458 Ricin-type beta-trefoil CS348_14215 SM01329 CS348_14215 CS348_14250 SM00448 cheY-homologous receiver domain CS348_14250 SM00862 Transcriptional regulatory protein, C terminal CS348_14255 SM00387 Histidine kinase-like ATPases CS348_14260 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CS348_14280 SM00382 ATPases associated with a variety of cellular activities CS348_14320 SM00382 ATPases associated with a variety of cellular activities CS348_14330 SM00487 DEAD-like helicases superfamily CS348_14330 SM00490 helicase superfamily c-terminal domain CS348_14330 SM00982 CS348_14330 CS348_14330 SM01058 CarD-like/TRCF domain CS348_14455 SM00825 Beta-ketoacyl synthase CS348_14465 SM00822 CS348_14465 CS348_14470 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CS348_14510 SM00363 S4 RNA-binding domain CS348_14520 SM00316 Ribosomal protein S1-like RNA-binding domain CS348_14535 SM00047 Lysozyme subfamily 2 CS348_14585 SM00858 CS348_14585 CS348_14670 SM00867 YceI-like domain CS348_14675 SM00450 Rhodanese Homology Domain CS348_14720 SM00155 Phospholipase D. Active site motifs. CS348_14725 SM00506 Appr-1"-p processing enzyme CS348_14750 SM00421 helix_turn_helix, Lux Regulon CS348_14780 SM00481 DNA polymerase alpha chain like domain CS348_14925 SM00271 DnaJ molecular chaperone homology domain CS348_14945 SM00849 Metallo-beta-lactamase superfamily CS348_14950 SM00342 helix_turn_helix, arabinose operon control protein CS348_14990 SM00347 helix_turn_helix multiple antibiotic resistance protein CS348_15000 SM00903 Flavin reductase like domain CS348_15010 SM00095 Transthyretin CS348_15015 SM00448 cheY-homologous receiver domain CS348_15015 SM00862 Transcriptional regulatory protein, C terminal CS348_15020 SM00387 Histidine kinase-like ATPases CS348_15020 SM00388 His Kinase A (phosphoacceptor) domain CS348_15085 SM00342 helix_turn_helix, arabinose operon control protein CS348_15095 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CS348_15100 SM00992 Hemimethylated DNA-binding protein YccV like CS348_15105 SM00881 CoA binding domain CS348_15115 SM00851 MGS-like domain CS348_15185 SM00382 ATPases associated with a variety of cellular activities CS348_15190 SM00981 CS348_15190 CS348_15235 SM00849 Metallo-beta-lactamase superfamily CS348_15305 SM00382 ATPases associated with a variety of cellular activities CS348_15310 SM00849 Metallo-beta-lactamase superfamily CS348_15315 SM00411 bacterial (prokaryotic) histone like domain CS348_15320 SM00316 Ribosomal protein S1-like RNA-binding domain CS348_15395 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CS348_15405 SM00382 ATPases associated with a variety of cellular activities CS348_15415 SM00843 CS348_15415 CS348_15420 SM00344 helix_turn_helix ASNC type CS348_15435 SM00382 ATPases associated with a variety of cellular activities CS348_15440 SM00382 ATPases associated with a variety of cellular activities CS348_15455 SM00316 Ribosomal protein S1-like RNA-binding domain CS348_15480 SM00382 ATPases associated with a variety of cellular activities CS348_15480 SM01086 C-terminal, D2-small domain, of ClpB protein CS348_15490 SM00357 Cold shock protein domain CS348_15495 SM00382 ATPases associated with a variety of cellular activities CS348_15555 SM00644 CS348_15555 CS348_15700 SM00507 HNH nucleases CS348_15745 SM00778 Zinc-binding domain of primase-helicase CS348_15750 SM00487 DEAD-like helicases superfamily CS348_15750 SM00490 helicase superfamily c-terminal domain CS348_15765 SM00530 Helix-turn-helix XRE-family like proteins CS348_15860 SM00382 ATPases associated with a variety of cellular activities CS348_15865 SM00062 Bacterial periplasmic substrate-binding proteins CS348_15865 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CS348_15880 SM00062 Bacterial periplasmic substrate-binding proteins CS348_15880 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CS348_15925 SM00382 ATPases associated with a variety of cellular activities CS348_15995 SM00014 Acid phosphatase homologues CS348_16000 SM00420 helix_turn_helix, Deoxyribose operon repressor CS348_16000 SM01134 CS348_16000 CS348_16005 SM00936 Penicillin-binding protein 5, C-terminal domain CS348_16055 SM00893 Electron transfer flavoprotein domain CS348_16075 SM00729 Elongator protein 3, MiaB family, Radical SAM CS348_16095 SM00382 ATPases associated with a variety of cellular activities CS348_16105 SM00852 Probable molybdopterin binding domain CS348_16135 SM00382 ATPases associated with a variety of cellular activities CS348_16150 SM00529 Helix-turn-helix diphteria tox regulatory element CS348_16180 SM00062 Bacterial periplasmic substrate-binding proteins CS348_16180 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CS348_16190 SM00382 ATPases associated with a variety of cellular activities CS348_16220 SM00487 DEAD-like helicases superfamily CS348_16220 SM00491 CS348_16220 CS348_16225 SM00487 DEAD-like helicases superfamily CS348_16225 SM00490 helicase superfamily c-terminal domain CS348_16240 SM00382 ATPases associated with a variety of cellular activities CS348_16265 SM00155 Phospholipase D. Active site motifs. CS348_16315 SM00852 Probable molybdopterin binding domain CS348_16320 SM00729 Elongator protein 3, MiaB family, Radical SAM CS348_16330 SM00364 Leucine-rich repeats, bacterial type CS348_16330 SM00369 Leucine-rich repeats, typical (most populated) subfamily CS348_16340 SM00487 DEAD-like helicases superfamily CS348_16340 SM00490 helicase superfamily c-terminal domain CS348_16365 SM00729 Elongator protein 3, MiaB family, Radical SAM CS348_16365 SM00876 Biotin and Thiamin Synthesis associated domain CS348_16390 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_16390 SM00866 CS348_16390 CS348_16420 SM00382 ATPases associated with a variety of cellular activities CS348_16450 SM00382 ATPases associated with a variety of cellular activities CS348_16485 SM00855 Phosphoglycerate mutase family CS348_16490 SM00382 ATPases associated with a variety of cellular activities CS348_16620 SM00881 CoA binding domain CS348_16635 SM00861 Transketolase, pyrimidine binding domain CS348_16680 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CS348_16680 SM01232 CS348_16680 CS348_16690 SM00797 Allophanate hydrolase subunit 2 CS348_16695 SM00796 Allophanate hydrolase subunit 1 CS348_16745 SM00387 Histidine kinase-like ATPases CS348_16745 SM00388 His Kinase A (phosphoacceptor) domain CS348_16750 SM00448 cheY-homologous receiver domain CS348_16750 SM00862 Transcriptional regulatory protein, C terminal CS348_16905 SM00729 Elongator protein 3, MiaB family, Radical SAM CS348_16920 SM00116 Domain in cystathionine beta-synthase and other proteins. CS348_16920 SM01091 Transporter associated domain CS348_16935 SM00062 Bacterial periplasmic substrate-binding proteins CS348_16950 SM00382 ATPases associated with a variety of cellular activities CS348_16965 SM00382 ATPases associated with a variety of cellular activities CS348_16980 SM00858 CS348_16980 CS348_17010 SM00855 Phosphoglycerate mutase family CS348_17040 SM00936 Penicillin-binding protein 5, C-terminal domain CS348_17060 SM00729 Elongator protein 3, MiaB family, Radical SAM CS348_17080 SM00357 Cold shock protein domain CS348_17100 SM00448 cheY-homologous receiver domain CS348_17105 SM00091 PAS domain CS348_17105 SM00387 Histidine kinase-like ATPases CS348_17115 SM00764 Citrate lyase ligase C-terminal domain CS348_17185 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CS348_17225 SM00470 ParB-like nuclease domain CS348_17255 SM00822 CS348_17255 CS348_17295 SM00382 ATPases associated with a variety of cellular activities CS348_17305 SM00824 Thioesterase CS348_17310 SM00923 MbtH-like protein CS348_17340 SM00342 helix_turn_helix, arabinose operon control protein CS348_17360 SM00869 Autotransporter beta-domain CS348_17395 SM00342 helix_turn_helix, arabinose operon control protein CS348_17405 SM00387 Histidine kinase-like ATPases CS348_17460 SM00060 Fibronectin type 3 domain CS348_17470 SM00232 JAB/MPN domain CS348_17500 SM00635 Bacterial Ig-like domain 2 CS348_17635 SM00400 zinc finger CS348_17645 SM01040 BRO family, N-terminal domain CS348_17680 SM00421 helix_turn_helix, Lux Regulon CS348_17695 SM00421 helix_turn_helix, Lux Regulon CS348_17695 SM00448 cheY-homologous receiver domain CS348_17760 SM00840 CS348_17760 CS348_17780 SM01001 AIR carboxylase CS348_17790 SM00450 Rhodanese Homology Domain CS348_17800 SM00382 ATPases associated with a variety of cellular activities CS348_17800 SM00930 CS348_17800 CS348_17820 SM00382 ATPases associated with a variety of cellular activities CS348_17830 SM00822 CS348_17830 CS348_17845 SM00382 ATPases associated with a variety of cellular activities CS348_17850 SM00244 prohibitin homologues CS348_17860 SM00422 helix_turn_helix, mercury resistance CS348_17925 SM00387 Histidine kinase-like ATPases CS348_17930 SM00493 CS348_17930 CS348_17940 SM00382 ATPases associated with a variety of cellular activities CS348_18005 SM01266 CS348_18005 CS348_18025 SM00052 Putative diguanylate phosphodiesterase CS348_18055 SM00938 Nitrogen regulatory protein P-II CS348_18060 SM00382 ATPases associated with a variety of cellular activities CS348_18065 SM00382 ATPases associated with a variety of cellular activities CS348_18070 SM00344 helix_turn_helix ASNC type CS348_18110 SM00411 bacterial (prokaryotic) histone like domain CS348_18115 SM00382 ATPases associated with a variety of cellular activities CS348_18115 SM00464 Found in ATP-dependent protease La (LON) CS348_18120 SM00382 ATPases associated with a variety of cellular activities CS348_18120 SM00994 ClpX C4-type zinc finger CS348_18120 SM01086 C-terminal, D2-small domain, of ClpB protein CS348_18215 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_18215 SM00866 CS348_18215 CS348_18225 SM00382 ATPases associated with a variety of cellular activities CS348_18240 SM00981 CS348_18240 CS348_18255 SM00861 Transketolase, pyrimidine binding domain CS348_18315 SM00507 HNH nucleases CS348_18330 SM01323 CS348_18330 CS348_18360 SM00642 Alpha-amylase domain CS348_18375 SM00091 PAS domain CS348_18375 SM00387 Histidine kinase-like ATPases CS348_18375 SM00388 His Kinase A (phosphoacceptor) domain CS348_18380 SM00448 cheY-homologous receiver domain CS348_18380 SM00862 Transcriptional regulatory protein, C terminal CS348_18440 SM00267 diguanylate cyclase CS348_18510 SM00869 Autotransporter beta-domain CS348_18515 SM01004 Delta-aminolevulinic acid dehydratase CS348_18540 SM00382 ATPases associated with a variety of cellular activities CS348_18560 SM00342 helix_turn_helix, arabinose operon control protein CS348_18605 SM00422 helix_turn_helix, mercury resistance CS348_18660 SM00052 Putative diguanylate phosphodiesterase CS348_18730 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CS348_18830 SM00344 helix_turn_helix ASNC type CS348_18935 SM00382 ATPases associated with a variety of cellular activities CS348_18935 SM01086 C-terminal, D2-small domain, of ClpB protein CS348_18975 SM00479 CS348_18975 CS348_18990 SM00849 Metallo-beta-lactamase superfamily CS348_18995 SM00257 Lysin motif CS348_19060 SM00382 ATPases associated with a variety of cellular activities CS348_19060 SM00930 CS348_19060 CS348_19100 SM01322 CS348_19100 CS348_19115 SM00977 TilS substrate C-terminal domain CS348_19130 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CS348_19140 SM00481 DNA polymerase alpha chain like domain CS348_19170 SM00935 Outer membrane protein (OmpH-like) CS348_19180 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CS348_19245 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CS348_19265 SM01276 CS348_19265 CS348_19275 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CS348_19280 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CS348_19325 SM00382 ATPases associated with a variety of cellular activities CS348_19340 SM00487 DEAD-like helicases superfamily CS348_19340 SM00490 helicase superfamily c-terminal domain CS348_19340 SM00847 Helicase associated domain (HA2) Add an annotation CS348_19460 SM00382 ATPases associated with a variety of cellular activities CS348_19465 SM00947 Carbonic anhydrase CS348_19475 SM00564 beta-propeller repeat CS348_19500 SM00420 helix_turn_helix, Deoxyribose operon repressor CS348_19500 SM01134 CS348_19500 CS348_19565 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_19565 SM00895 CS348_19565 CS348_19590 SM00644 CS348_19590 CS348_19620 SM01240 CS348_19620 CS348_19655 SM00957 SecA DEAD-like domain CS348_19655 SM00958 SecA preprotein cross-linking domain CS348_19670 SM00864 Tubulin/FtsZ family, GTPase domain CS348_19670 SM00865 Tubulin/FtsZ family, C-terminal domain CS348_19675 SM00842 Cell division protein FtsA CS348_19745 SM00354 helix_turn _helix lactose operon repressor CS348_19770 SM00917 LeuA allosteric (dimerisation) domain CS348_19775 SM01329 CS348_19775 CS348_19810 SM00382 ATPases associated with a variety of cellular activities CS348_19820 SM00342 helix_turn_helix, arabinose operon control protein CS348_19835 SM01007 Class II Aldolase and Adducin N-terminal domain CS348_19855 SM00486 DNA polymerase type-B family CS348_19860 SM00487 DEAD-like helicases superfamily CS348_19860 SM00490 helicase superfamily c-terminal domain CS348_19870 SM00271 DnaJ molecular chaperone homology domain CS348_19890 SM00650 Ribosomal RNA adenine dimethylases CS348_19975 SM00893 Electron transfer flavoprotein domain CS348_19980 SM00893 Electron transfer flavoprotein domain CS348_20025 SM00851 MGS-like domain CS348_20025 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CS348_20030 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CS348_20070 SM00764 Citrate lyase ligase C-terminal domain CS348_20095 SM00091 PAS domain CS348_20095 SM00387 Histidine kinase-like ATPases CS348_20100 SM00448 cheY-homologous receiver domain CS348_20135 SM00904 Riboflavin kinase CS348_20215 SM00862 Transcriptional regulatory protein, C terminal CS348_20275 SM00636 CS348_20275 CS348_20300 SM00271 DnaJ molecular chaperone homology domain CS348_20325 SM00852 Probable molybdopterin binding domain CS348_20375 SM00448 cheY-homologous receiver domain CS348_20375 SM00862 Transcriptional regulatory protein, C terminal CS348_20420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CS348_20420 SM00387 Histidine kinase-like ATPases CS348_20420 SM00388 His Kinase A (phosphoacceptor) domain CS348_20425 SM00448 cheY-homologous receiver domain CS348_20425 SM00862 Transcriptional regulatory protein, C terminal CS348_20435 SM00342 helix_turn_helix, arabinose operon control protein CS348_20435 SM00871 Bacterial transcription activator, effector binding domain CS348_20440 SM00855 Phosphoglycerate mutase family CS348_20465 SM00382 ATPases associated with a variety of cellular activities CS348_20470 SM00530 Helix-turn-helix XRE-family like proteins CS348_20475 SM00382 ATPases associated with a variety of cellular activities CS348_20720 SM00382 ATPases associated with a variety of cellular activities CS348_20795 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CS348_20800 SM01133 CS348_20800 CS348_20830 SM00749 bacterial OsmY and nodulation domain CS348_20880 SM00267 diguanylate cyclase CS348_20895 SM00421 helix_turn_helix, Lux Regulon CS348_20900 SM00421 helix_turn_helix, Lux Regulon CS348_20920 SM00382 ATPases associated with a variety of cellular activities CS348_20965 SM00382 ATPases associated with a variety of cellular activities CS348_20970 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CS348_20970 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CS348_20970 SM00319 Homologues of the ligand binding domain of Tar CS348_20985 SM00833 Cobalamin synthesis protein cobW C-terminal domain CS348_20990 SM00342 helix_turn_helix, arabinose operon control protein CS348_21080 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_21080 SM00895 CS348_21080 CS348_21165 SM00829 Enoylreductase CS348_21190 SM00354 helix_turn _helix lactose operon repressor CS348_21325 SM00831 Cation transporter/ATPase, N-terminus CS348_21330 SM00354 helix_turn _helix lactose operon repressor CS348_21340 SM00642 Alpha-amylase domain CS348_21480 SM00342 helix_turn_helix, arabinose operon control protein CS348_21570 SM01091 Transporter associated domain CS348_21680 SM01007 Class II Aldolase and Adducin N-terminal domain CS348_21690 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CS348_21715 SM00420 helix_turn_helix, Deoxyribose operon repressor CS348_21715 SM01134 CS348_21715 CS348_21770 SM00967 RNA 2'-O ribose methyltransferase substrate binding CS348_21775 SM00316 Ribosomal protein S1-like RNA-binding domain CS348_21775 SM00357 Cold shock protein domain CS348_21775 SM00955 CS348_21775 CS348_21790 SM00788 Adenylosuccinate synthetase CS348_21800 SM00244 prohibitin homologues CS348_21805 SM00244 prohibitin homologues CS348_21825 SM00853 MutL C terminal dimerisation domain CS348_21825 SM01340 CS348_21825 CS348_21830 SM00646 CS348_21830 CS348_21865 SM00062 Bacterial periplasmic substrate-binding proteins CS348_21865 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CS348_21870 SM00479 CS348_21870 CS348_21930 SM00421 helix_turn_helix, Lux Regulon CS348_21945 SM00841 Elongation factor P, C-terminal CS348_21945 SM01185 CS348_21945 CS348_21970 SM00883 Chaperonin 10 Kd subunit CS348_22020 SM00014 Acid phosphatase homologues CS348_22105 SM00342 helix_turn_helix, arabinose operon control protein CS348_22110 SM00421 helix_turn_helix, Lux Regulon CS348_22145 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CS348_22150 SM00091 PAS domain CS348_22150 SM00387 Histidine kinase-like ATPases CS348_22155 SM00448 cheY-homologous receiver domain CS348_22185 SM00342 helix_turn_helix, arabinose operon control protein CS348_22195 SM00342 helix_turn_helix, arabinose operon control protein CS348_22210 SM00448 cheY-homologous receiver domain CS348_22210 SM00862 Transcriptional regulatory protein, C terminal CS348_22215 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CS348_22215 SM00387 Histidine kinase-like ATPases CS348_22215 SM00388 His Kinase A (phosphoacceptor) domain CS348_22255 SM00671 Sel1-like repeats. CS348_22265 SM00028 Tetratricopeptide repeats CS348_22360 SM00422 helix_turn_helix, mercury resistance CS348_22365 SM00342 helix_turn_helix, arabinose operon control protein CS348_22370 SM00052 Putative diguanylate phosphodiesterase CS348_22380 SM00382 ATPases associated with a variety of cellular activities CS348_22460 SM01005 Alanine racemase, C-terminal domain CS348_22465 SM00382 ATPases associated with a variety of cellular activities CS348_22470 SM00829 Enoylreductase CS348_22520 SM00563 Phosphate acyltransferases CS348_22545 SM00382 ATPases associated with a variety of cellular activities CS348_22625 SM00420 helix_turn_helix, Deoxyribose operon repressor CS348_22625 SM01134 CS348_22625 CS348_22640 SM00363 S4 RNA-binding domain CS348_22665 SM01018 B12 binding domain CS348_22670 SM00346 helix_turn_helix isocitrate lyase regulation CS348_22675 SM01022 CS348_22675 CS348_22725 SM00798 AICARFT/IMPCHase bienzyme CS348_22725 SM00851 MGS-like domain CS348_22730 SM01209 CS348_22730 CS348_22730 SM01210 CS348_22730 CS348_22735 SM00382 ATPases associated with a variety of cellular activities CS348_22735 SM00448 cheY-homologous receiver domain CS348_22740 SM00387 Histidine kinase-like ATPases CS348_22740 SM00388 His Kinase A (phosphoacceptor) domain CS348_22755 SM00411 bacterial (prokaryotic) histone like domain CS348_22810 SM00876 Biotin and Thiamin Synthesis associated domain CS348_22830 SM00663 RNA polymerase I subunit A N-terminus CS348_22860 SM00649 Ribosomal protein L11/L12 CS348_22865 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CS348_22865 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CS348_23010 SM00859 Semialdehyde dehydrogenase, NAD binding domain CS348_23035 SM00342 helix_turn_helix, arabinose operon control protein CS348_23110 SM00487 DEAD-like helicases superfamily CS348_23110 SM00490 helicase superfamily c-terminal domain CS348_23115 SM00354 helix_turn _helix lactose operon repressor CS348_23130 SM00382 ATPases associated with a variety of cellular activities CS348_23130 SM01086 C-terminal, D2-small domain, of ClpB protein CS348_23195 SM01133 CS348_23195 CS348_23215 SM00382 ATPases associated with a variety of cellular activities CS348_23245 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_23245 SM00866 CS348_23245 CS348_23475 SM00530 Helix-turn-helix XRE-family like proteins CS348_23490 SM00448 cheY-homologous receiver domain CS348_23490 SM00862 Transcriptional regulatory protein, C terminal CS348_23495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CS348_23495 SM00387 Histidine kinase-like ATPases CS348_23495 SM00388 His Kinase A (phosphoacceptor) domain CS348_23540 SM00342 helix_turn_helix, arabinose operon control protein CS348_23545 SM00342 helix_turn_helix, arabinose operon control protein CS348_23560 SM01007 Class II Aldolase and Adducin N-terminal domain CS348_23575 SM00530 Helix-turn-helix XRE-family like proteins CS348_23600 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CS348_23625 SM00530 Helix-turn-helix XRE-family like proteins CS348_23645 SM00530 Helix-turn-helix XRE-family like proteins CS348_23670 SM00420 helix_turn_helix, Deoxyribose operon repressor CS348_23670 SM01134 CS348_23670 CS348_23685 SM01133 CS348_23685 CS348_23735 SM00729 Elongator protein 3, MiaB family, Radical SAM CS348_23760 SM01230 CS348_23760 CS348_23770 SM00091 PAS domain CS348_23770 SM00387 Histidine kinase-like ATPases CS348_23770 SM00388 His Kinase A (phosphoacceptor) domain CS348_23775 SM00382 ATPases associated with a variety of cellular activities CS348_23775 SM00448 cheY-homologous receiver domain CS348_23785 SM00729 Elongator protein 3, MiaB family, Radical SAM CS348_23805 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CS348_23805 SM00474 3'-5' exonuclease CS348_23805 SM00475 5'-3' exonuclease CS348_23805 SM00482 DNA polymerase A domain CS348_23815 SM00563 Phosphate acyltransferases CS348_23920 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CS348_24015 SM00341 Helicase and RNase D C-terminal CS348_24015 SM00487 DEAD-like helicases superfamily CS348_24015 SM00490 helicase superfamily c-terminal domain CS348_24015 SM00956 CS348_24015 CS348_24095 SM01219 CS348_24095 CS348_24190 SM00984 UDP binding domain CS348_24215 SM00357 Cold shock protein domain CS348_24215 SM00382 ATPases associated with a variety of cellular activities CS348_24215 SM00959 Rho termination factor, N-terminal domain CS348_24225 SM00487 DEAD-like helicases superfamily CS348_24225 SM00490 helicase superfamily c-terminal domain CS348_24250 SM00100 Cyclic nucleotide-monophosphate binding domain CS348_24315 SM00382 ATPases associated with a variety of cellular activities CS348_24360 SM00345 helix_turn_helix gluconate operon transcriptional repressor CS348_24360 SM00895 CS348_24360 CS348_24370 SM00354 helix_turn _helix lactose operon repressor CS348_24390 SM00382 ATPases associated with a variety of cellular activities CS348_24405 SM00382 ATPases associated with a variety of cellular activities CS348_24410 SM00327 von Willebrand factor (vWF) type A domain CS348_24420 SM00344 helix_turn_helix ASNC type CS348_24430 SM01228 CS348_24430 CS348_24475 SM00382 ATPases associated with a variety of cellular activities CS348_24515 SM01059 Chloramphenicol acetyltransferase CS348_24550 SM00382 ATPases associated with a variety of cellular activities CS348_24600 SM01234 CS348_24600 CS348_24615 SM00342 helix_turn_helix, arabinose operon control protein CS348_24635 SM00382 ATPases associated with a variety of cellular activities CS348_24660 SM00479 CS348_24660 CS348_24685 SM00857 Resolvase, N terminal domain CS348_24695 SM00470 ParB-like nuclease domain CS348_24890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CS348_24890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CS348_24900 SM00470 ParB-like nuclease domain CS348_24945 SM00387 Histidine kinase-like ATPases CS348_24945 SM00388 His Kinase A (phosphoacceptor) domain CS348_24950 SM00421 helix_turn_helix, Lux Regulon CS348_24950 SM00448 cheY-homologous receiver domain CS348_25225 SM00912 haemagglutination activity domain CS348_25445 SM00470 ParB-like nuclease domain CS348_25605 SM00342 helix_turn_helix, arabinose operon control protein CS348_25610 SM00235 Zinc-dependent metalloprotease CS348_25620 SM00382 ATPases associated with a variety of cellular activities CS348_25670 SM00382 ATPases associated with a variety of cellular activities CS348_25695 SM00530 Helix-turn-helix XRE-family like proteins CS348_25745 SM01321 CS348_25745 CS348_25775 SM00945 ProQ/FINO family